DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.528e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2335 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17098670	2R_17098670_SNP [dm3] 2R_21211165_SNP [dm6]	A	G	8.475e^-7	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	26038957	3R_26038957_SNP [dm3] 3R_30213235_SNP [dm6]	T	A	8.478e^-7	0.702	DOWNSTREAM CecB & 2 others INTERGENIC
3R	26038965	3R_26038965_SNP [dm3] 3R_30213243_SNP [dm6]	T	A	1.686e^-6	0.702	DOWNSTREAM CecB & 2 others INTERGENIC
3R	26039000	3R_26039000_SNP [dm3] 3R_30213278_SNP [dm6]	A	G	1.830e^-6	0.702	DOWNSTREAM CecB & 2 others INTERGENIC
3R	14795572	3R_14795572_SNP [dm3] 3R_18969850_SNP [dm6]	C	T	2.356e^-6	0.702	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732
3R	26038971	3R_26038971_SNP [dm3] 3R_30213249_SNP [dm6]	G	C	2.410e^-6	0.702	DOWNSTREAM CecB & 2 others INTERGENIC
2R	17098498	2R_17098498_SNP [dm3] 2R_21210993_SNP [dm6]	G	A	2.704e^-6	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
X	4719972	X_4719972_SNP [dm3] X_4825939_SNP [dm6]	T	C	3.105e^-6	0.702	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27153377	3R_27153377_SNP [dm3] 3R_31327655_SNP [dm6]	C	G	4.756e^-6	0.702	INTRON CG34347	TF binding site mE1_TFBS_cad
2R	6372638	2R_6372638_SNP [dm3] 2R_10485133_SNP [dm6]	T	G	5.148e^-6	0.702	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25152618	3R_25152618_DEL [dm3] 3R_29326896_DEL [dm6]	GG	G	5.701e^-6	0.702	INTERGENIC
X	17300532	X_17300532_DEL [dm3] X_17406499_DEL [dm6]	AGTAG	A	6.326e^-6	0.702	INTERGENIC
3L	21733898	3L_21733898_SNP [dm3] 3L_21740798_SNP [dm6]	A	T	6.926e^-6	0.702	UPSTREAM CG14566 & 1 other INTERGENIC
2R	17098468	2R_17098468_SNP [dm3] 2R_21210963_SNP [dm6]	T	C	7.088e^-6	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	26037044	3R_26037044_SNP [dm3] 3R_30211322_SNP [dm6]	A	G	7.558e^-6	0.702	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM Anp & 1 other INTERGENIC
2L	6140063	2L_6140063_SNP [dm3] 2L_6140063_SNP [dm6]	G	A	7.882e^-6	0.702	NON_SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21072726	3R_21072726_SNP [dm3] 3R_25247004_SNP [dm6]	C	A	8.319e^-6	0.702	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	9924871	2R_9924871_SNP [dm3] 2R_14037366_SNP [dm6]	G	A	8.409e^-6	0.702	INTRON mam	TF binding site mE1_TFBS_HSA
2R	17098497	2R_17098497_SNP [dm3] 2R_21210992_SNP [dm6]	A	G	8.515e^-6	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	13749183	3L_13749183_SNP [dm3] 3L_13756083_SNP [dm6]	T	C	9.114e^-6	0.702	INTRON bru-3
3R	27150894	3R_27150894_SNP [dm3] 3R_31325172_SNP [dm6]	A	G	9.425e^-6	0.702	INTRON CG34347
X	14441817	X_14441817_SNP [dm3] X_14547784_SNP [dm6]	A	G	1.020e^-5	0.702	INTERGENIC
2R	16667923	2R_16667923_SNP [dm3] 2R_20780418_SNP [dm6]	T	A	1.039e^-5	0.702	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17088175	2R_17088175_SNP [dm3] 2R_21200670_SNP [dm6]	C	T	1.083e^-5	0.702	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20438301	2R_20438301_SNP [dm3] 2R_24550778_SNP [dm6]	A	G	1.110e^-5	0.702	INTRON CG4622 & 1 other
3R	22466645	3R_22466645_SNP [dm3] 3R_26640923_SNP [dm6]	G	A	1.195e^-5	0.702	UTR_3_PRIME TwdlD
3R	25157868	3R_25157868_SNP [dm3] 3R_29332146_SNP [dm6]	G	C	1.207e^-5	0.702	INTERGENIC
2L	2264650	2L_2264650_SNP [dm3] 2L_2264650_SNP [dm6]	A	T	1.241e^-5	0.702	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
3R	27111741	3R_27111741_SNP [dm3] 3R_31286019_SNP [dm6]	T	G	1.261e^-5	0.702	INTERGENIC
2R	16954085	2R_16954085_SNP [dm3] 2R_21066580_SNP [dm6]	T	G	1.269e^-5	0.702	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
3R	23873483	3R_23873483_SNP [dm3] 3R_28047761_SNP [dm6]	C	G	1.292e^-5	0.702	INTRON CG34362
2R	54442	2R_54442_SNP [dm3] 2R_4166937_SNP [dm6]	G	T	1.318e^-5	0.702	INTERGENIC
3R	22369323	3R_22369323_SNP [dm3] 3R_26543601_SNP [dm6]	T	C	1.328e^-5	0.702	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	17098444	2R_17098444_SNP [dm3] 2R_21210939_SNP [dm6]	A	T	1.377e^-5	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	22557224	3L_22557224_SNP [dm3] 3L_22564124_SNP [dm6]	C	A	1.459e^-5	0.702	INTERGENIC
2R	17098683	2R_17098683_SNP [dm3] 2R_21211178_SNP [dm6]	G	A	1.463e^-5	0.702	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	7535717	3L_7535717_SNP [dm3] 3L_7542617_SNP [dm6]	C	T	1.514e^-5	0.702	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3786596	3L_3786596_SNP [dm3] 3L_3786596_SNP [dm6]	A	T	1.525e^-5	0.702	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	7535710	3L_7535710_SNP [dm3] 3L_7542610_SNP [dm6]	T	A	1.611e^-5	0.702	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19845243	3R_19845243_SNP [dm3] 3R_24019521_SNP [dm6]	T	A	1.648e^-5	0.702	INTRON KrT95D
3L	7535288	3L_7535288_SNP [dm3] 3L_7542188_SNP [dm6]	A	C	1.671e^-5	0.702	SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	28163	2R_28163_SNP [dm3] 2R_4140658_SNP [dm6]	A	G	1.807e^-5	0.702	INTERGENIC
3R	21053184	3R_21053184_SNP [dm3] 3R_25227462_SNP [dm6]	A	C	1.818e^-5	0.702	INTRON Cad96Cb
3R	21053311	3R_21053311_SNP [dm3] 3R_25227589_SNP [dm6]	G	A	1.818e^-5	0.702	INTRON Cad96Cb
3L	10694944	3L_10694944_SNP [dm3] 3L_10701844_SNP [dm6]	A	G	1.829e^-5	0.702	INTERGENIC
2R	16921434	2R_16921434_SNP [dm3] 2R_21033929_SNP [dm6]	T	A	1.969e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20815247	3R_20815247_SNP [dm3] 3R_24989525_SNP [dm6]	A	G	1.979e^-5	0.702	INTRON tnc
3R	23873454	3R_23873454_DEL [dm3] 3R_28047732_DEL [dm6]	GG	G	1.993e^-5	0.702	INTRON CG34362
2R	16665509	2R_16665509_SNP [dm3] 2R_20778004_SNP [dm6]	A	C	2.025e^-5	0.702	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3L	3766907	3L_3766907_SNP [dm3] 3L_3766907_SNP [dm6]	G	T	2.028e^-5	0.702	INTRON CG32264	TF binding site mE1_TFBS_bab1
3R	26566949	3R_26566949_SNP [dm3] 3R_30741227_SNP [dm6]	T	C	2.035e^-5	0.702	INTERGENIC
3L	13789012	3L_13789012_SNP [dm3] 3L_13795912_SNP [dm6]	C	T	2.150e^-5	0.702	INTRON bru-3
3L	13789013	3L_13789013_SNP [dm3] 3L_13795913_SNP [dm6]	C	T	2.150e^-5	0.702	INTRON bru-3
2L	9336243	2L_9336243_SNP [dm3] 2L_9336243_SNP [dm6]	A	C	2.179e^-5	0.702	INTRON Eaat1
3R	6254419	3R_6254419_SNP [dm3] 3R_10428697_SNP [dm6]	C	T	2.204e^-5	0.702	INTERGENIC
3R	26034983	3R_26034983_SNP [dm3] 3R_30209261_SNP [dm6]	C	T	2.253e^-5	0.702	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22466347	3R_22466347_SNP [dm3] 3R_26640625_SNP [dm6]	G	C	2.352e^-5	0.702	SYNONYMOUS_CODING TwdlD
3L	13677744	3L_13677744_SNP [dm3] 3L_13684644_SNP [dm6]	C	T	2.410e^-5	0.702	INTRON bru-3
3L	12722081	3L_12722081_SNP [dm3] 3L_12728981_SNP [dm6]	T	C	2.444e^-5	0.702	INTERGENIC
3R	21053470	3R_21053470_SNP [dm3] 3R_25227748_SNP [dm6]	G	T	2.479e^-5	0.702	INTRON Cad96Cb
3R	22466765	3R_22466765_SNP [dm3] 3R_26641043_SNP [dm6]	T	A	2.552e^-5	0.702	UTR_3_PRIME TwdlD
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	2.627e^-5	0.702	DOWNSTREAM CR44545 INTERGENIC
2L	12340510	2L_12340510_SNP [dm3] 2L_12340510_SNP [dm6]	G	A	2.631e^-5	0.702	INTERGENIC
3R	20933054	3R_20933054_SNP [dm3] 3R_25107332_SNP [dm6]	A	G	2.664e^-5	0.702	SYNONYMOUS_CODING CG34027
3R	26034967	3R_26034967_SNP [dm3] 3R_30209245_SNP [dm6]	T	A	2.672e^-5	0.702	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16955921	2R_16955921_SNP [dm3] 2R_21068416_SNP [dm6]	G	A	2.714e^-5	0.702	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
3R	11435527	3R_11435527_SNP [dm3] 3R_15609805_SNP [dm6]	A	T	2.745e^-5	0.702	INTERGENIC
3R	26930915	3R_26930915_SNP [dm3] 3R_31105193_SNP [dm6]	T	C	2.765e^-5	0.702	INTERGENIC
3R	26566963	3R_26566963_SNP [dm3] 3R_30741241_SNP [dm6]	G	T	2.785e^-5	0.702	INTERGENIC
2R	3928064	2R_3928064_SNP [dm3] 2R_8040559_SNP [dm6]	C	G	2.793e^-5	0.702	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3766905	3L_3766905_SNP [dm3] 3L_3766905_SNP [dm6]	T	C	2.852e^-5	0.702	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	8382983	3L_8382983_SNP [dm3] 3L_8389883_SNP [dm6]	A	G	2.912e^-5	0.702	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12340502	2L_12340502_SNP [dm3] 2L_12340502_SNP [dm6]	G	A	3.090e^-5	0.702	INTERGENIC
2R	17563952	2R_17563952_SNP [dm3] 2R_21676447_SNP [dm6]	G	A	3.100e^-5	0.702	UTR_5_PRIME CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2672761	2L_2672761_SNP [dm3] 2L_2672761_SNP [dm6]	A	G	3.128e^-5	0.702	DOWNSTREAM Gr23a INTERGENIC
3R	24991977	3R_24991977_SNP [dm3] 3R_29166255_SNP [dm6]	C	A	3.209e^-5	0.702	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
2R	4496307	2R_4496307_SNP [dm3] 2R_8608802_SNP [dm6]	T	A	3.209e^-5	0.702	INTRON rgr
2L	3642631	2L_3642631_SNP [dm3] 2L_3642631_SNP [dm6]	A	G	3.331e^-5	0.702	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2835447	2L_2835447_SNP [dm3] 2L_2835447_SNP [dm6]	C	T	3.368e^-5	0.702	SYNONYMOUS_CODING CG3119 DOWNSTREAM CG3119
2L	15031948	2L_15031948_SNP [dm3] 2L_15031948_SNP [dm6]	T	A	3.370e^-5	0.702	UPSTREAM CG31832 INTRON GABA-B-R1
2R	17568542	2R_17568542_SNP [dm3] 2R_21681037_SNP [dm6]	A	C	3.426e^-5	0.702	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
3L	7535965	3L_7535965_SNP [dm3] 3L_7542865_SNP [dm6]	C	T	3.464e^-5	0.702	UPSTREAM CG32376 INTERGENIC
3L	12641483	3L_12641483_SNP [dm3] 3L_12648383_SNP [dm6]	G	C	3.485e^-5	0.702	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7535318	3L_7535318_SNP [dm3] 3L_7542218_SNP [dm6]	C	T	3.512e^-5	0.702	SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7005107	2R_7005107_SNP [dm3] 2R_11117602_SNP [dm6]	C	T	3.529e^-5	0.702	UTR_3_PRIME Cyp12d1-p
3L	7535975	3L_7535975_SNP [dm3] 3L_7542875_SNP [dm6]	C	G	3.549e^-5	0.702	UPSTREAM CG32376 INTERGENIC
3L	7535981	3L_7535981_SNP [dm3] 3L_7542881_SNP [dm6]	A	C	3.549e^-5	0.702	UPSTREAM CG32376 INTERGENIC
3L	13970552	3L_13970552_SNP [dm3] 3L_13977452_SNP [dm6]	T	C	3.551e^-5	0.702	SYNONYMOUS_CODING Hsc70-1 DOWNSTREAM CG17364	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	19971052	X_19971052_SNP [dm3] X_20077019_SNP [dm6]	C	T	3.616e^-5	0.702	INTERGENIC
3L	7535848	3L_7535848_SNP [dm3] 3L_7542748_SNP [dm6]	A	G	3.624e^-5	0.702	UPSTREAM CG32376 INTERGENIC
3R	22485271	3R_22485271_SNP [dm3] 3R_26659549_SNP [dm6]	G	A	3.627e^-5	0.702	INTRON beat-VII
3R	26038902	3R_26038902_SNP [dm3] 3R_30213180_SNP [dm6]	G	A	3.630e^-5	0.702	DOWNSTREAM CecB & 2 others INTERGENIC
2R	9924958	2R_9924958_SNP [dm3] 2R_14037453_SNP [dm6]	G	T	3.659e^-5	0.702	INTRON mam	TF binding site mE1_TFBS_HSA
2R	20819	2R_20819_SNP [dm3] 2R_4133314_SNP [dm6]	A	G	3.705e^-5	0.702	UTR_3_PRIME CG17683 DOWNSTREAM CG17683
3R	7710536	3R_7710536_SNP [dm3] 3R_11884814_SNP [dm6]	G	T	3.726e^-5	0.702	SYNONYMOUS_CODING mthl5 INTRON CG31368
2R	18117876	2R_18117876_SNP [dm3] 2R_22230371_SNP [dm6]	A	C	3.740e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3599198	3L_3599198_SNP [dm3] 3L_3599198_SNP [dm6]	T	A	3.747e^-5	0.702	INTRON Eip63E
2R	16667377	2R_16667377_SNP [dm3] 2R_20779872_SNP [dm6]	A	T	3.763e^-5	0.702	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2R	17564883	2R_17564883_SNP [dm3] 2R_21677378_SNP [dm6]	C	T	3.833e^-5	0.702	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3361782	3L_3361782_SNP [dm3] 3L_3361782_SNP [dm6]	A	G	4.024e^-5	0.702	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	9058377	2R_9058377_SNP [dm3] 2R_13170872_SNP [dm6]	A	T	4.042e^-5	0.702	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3L	3766904	3L_3766904_SNP [dm3] 3L_3766904_SNP [dm6]	C	T	4.078e^-5	0.702	INTRON CG32264	TF binding site mE1_TFBS_bab1
X	4207135	X_4207135_SNP [dm3] X_4313102_SNP [dm6]	G	A	4.101e^-5	0.702	INTRON CR44957
2R	9926335	2R_9926335_SNP [dm3] 2R_14038830_SNP [dm6]	G	T	4.102e^-5	0.702	NON_SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo
3L	13784856	3L_13784856_SNP [dm3] 3L_13791756_SNP [dm6]	G	A	4.118e^-5	0.702	INTRON bru-3
2R	17087840	2R_17087840_SNP [dm3] 2R_21200335_SNP [dm6]	C	G	4.135e^-5	0.702	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	9525958	2R_9525958_SNP [dm3] 2R_13638453_SNP [dm6]	G	C	4.141e^-5	0.702	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16667934	2R_16667934_SNP [dm3] 2R_20780429_SNP [dm6]	A	G	4.143e^-5	0.702	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10990439	2L_10990439_SNP [dm3] 2L_10990439_SNP [dm6]	C	A	4.174e^-5	0.702	SYNONYMOUS_CODING CG16833 INTRON CG16833	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	21733905	3L_21733905_SNP [dm3] 3L_21740805_SNP [dm6]	T	G	4.188e^-5	0.702	UPSTREAM CG14566 & 1 other INTERGENIC
3R	15871988	3R_15871988_SNP [dm3] 3R_20046266_SNP [dm6]	G	C	4.271e^-5	0.702	DOWNSTREAM Indy-2 INTRON CG17193 & 2 others	TF binding site mE1_TFBS_inv
3R	22466754	3R_22466754_SNP [dm3] 3R_26641032_SNP [dm6]	G	C	4.309e^-5	0.702	UTR_3_PRIME TwdlD
2R	15702247	2R_15702247_SNP [dm3] 2R_19814742_SNP [dm6]	G	A	4.352e^-5	0.702	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
2L	10586705	2L_10586705_SNP [dm3] 2L_10586705_SNP [dm6]	T	C	4.393e^-5	0.702	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9104758	X_9104758_SNP [dm3] X_9210725_SNP [dm6]	T	C	4.426e^-5	0.702	UTR_5_PRIME CG12119 UPSTREAM CG12119	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26642265	3R_26642265_DEL [dm3] 3R_30816543_DEL [dm6]	ATATAAAAACTGAGTCA...	A	4.456e^-5	0.702	INTRON cindr
2R	3364677	2R_3364677_SNP [dm3] 2R_7477172_SNP [dm6]	G	A	4.463e^-5	0.702	UPSTREAM Aldh-III INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4956410	X_4956410_SNP [dm3] X_5062377_SNP [dm6]	G	A	4.475e^-5	0.702	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18610009	3R_18610009_SNP [dm3] 3R_22784287_SNP [dm6]	G	A	4.531e^-5	0.702	INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	797524	3R_797524_SNP [dm3] 3R_4971802_SNP [dm6]	G	A	4.537e^-5	0.702	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
3R	16225467	3R_16225467_SNP [dm3] 3R_20399745_SNP [dm6]	G	T	4.620e^-5	0.702	NON_SYNONYMOUS_CODING Gfrl DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26039909	3R_26039909_SNP [dm3] 3R_30214187_SNP [dm6]	G	C	4.684e^-5	0.702	UPSTREAM CecB INTERGENIC
X	12168370	X_12168370_DEL [dm3] X_12274337_DEL [dm6]	GTAG	G	4.697e^-5	0.702	UPSTREAM CG45603 INTRON Ten-a
3R	22466395	3R_22466395_SNP [dm3] 3R_26640673_SNP [dm6]	A	G	4.706e^-5	0.702	SYNONYMOUS_CODING TwdlD
3R	18378542	3R_18378542_SNP [dm3] 3R_22552820_SNP [dm6]	A	G	4.737e^-5	0.702	UPSTREAM bond & 1 other INTRON bond
3R	9767217	3R_9767217_SNP [dm3] 3R_13941495_SNP [dm6]	A	T	4.861e^-5	0.702	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16667922	2R_16667922_SNP [dm3] 2R_20780417_SNP [dm6]	C	T	4.875e^-5	0.702	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26035012	3R_26035012_INS [dm3] 3R_30209290_INS [dm6]	T	TTT	4.903e^-5	0.702	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3786738	3L_3786738_SNP [dm3] 3L_3786738_SNP [dm6]	A	T	4.933e^-5	0.702	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	848197	2R_848197_SNP [dm3] 2R_4960692_SNP [dm6]	G	A	4.934e^-5	0.702	INTRON Ir41a	transposable element FlyBase
2R	8725261	2R_8725261_SNP [dm3] 2R_12837756_SNP [dm6]	A	C	5.038e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12647311	3L_12647311_SNP [dm3] 3L_12654211_SNP [dm6]	A	G	5.049e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19970349	X_19970349_DEL [dm3] X_20076316_DEL [dm6]	GCG	G	5.058e^-5	0.702	INTERGENIC
2R	6994584	2R_6994584_INS [dm3] 2R_11107079_INS [dm6]	A	ACATAC	5.116e^-5	0.702	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14015256	3R_14015256_SNP [dm3] 3R_18189534_SNP [dm6]	T	C	5.136e^-5	0.702	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25806184	3R_25806184_SNP [dm3] 3R_29980462_SNP [dm6]	A	C	5.171e^-5	0.702	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12338977	2L_12338977_SNP [dm3] 2L_12338977_SNP [dm6]	T	C	5.205e^-5	0.702	SYNONYMOUS_CODING CG31862
2L	14792716	2L_14792716_SNP [dm3] 2L_14792716_SNP [dm6]	C	T	5.213e^-5	0.702	INTERGENIC
2R	6995301	2R_6995301_SNP [dm3] 2R_11107796_SNP [dm6]	C	A	5.240e^-5	0.702	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13749199	3L_13749199_SNP [dm3] 3L_13756099_SNP [dm6]	T	G	5.243e^-5	0.702	INTRON bru-3
3R	9917527	3R_9917527_SNP [dm3] 3R_14091805_SNP [dm6]	T	C	5.328e^-5	0.702	DOWNSTREAM CCHa1 INTRON Npc2b
2R	6994881	2R_6994881_INS [dm3] 2R_11107376_INS [dm6]	T	TTT	5.364e^-5	0.702	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23004611	3R_23004611_SNP [dm3] 3R_27178889_SNP [dm6]	G	A	5.368e^-5	0.702	SYNONYMOUS_CODING Ser
X	12571493	X_12571493_SNP [dm3] X_12677460_SNP [dm6]	G	C	5.421e^-5	0.702	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	5.435e^-5	0.702	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2R	14016928	2R_14016928_SNP [dm3] 2R_18129423_SNP [dm6]	A	G	5.526e^-5	0.702	SYNONYMOUS_CODING Dip3 DOWNSTREAM Hsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8017697	3L_8017697_INS [dm3] 3L_8024597_INS [dm6]	A	ACA	5.578e^-5	0.702	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4207139	X_4207139_SNP [dm3] X_4313106_SNP [dm6]	C	A	5.579e^-5	0.702	INTRON CR44957
3R	26930902	3R_26930902_SNP [dm3] 3R_31105180_SNP [dm6]	G	A	5.644e^-5	0.702	INTERGENIC
2L	4691291	2L_4691291_SNP [dm3] 2L_4691291_SNP [dm6]	A	T	5.648e^-5	0.702	UPSTREAM CG3251 INTERGENIC
3R	26035044	3R_26035044_SNP [dm3] 3R_30209322_SNP [dm6]	T	A	5.716e^-5	0.702	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17564861	2R_17564861_SNP [dm3] 2R_21677356_SNP [dm6]	C	T	5.771e^-5	0.702	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10999043	3R_10999043_SNP [dm3] 3R_15173321_SNP [dm6]	T	G	5.803e^-5	0.702	DOWNSTREAM Mf INTRON Mf & 1 other
3R	5936436	3R_5936436_SNP [dm3] 3R_10110714_SNP [dm6]	G	C	5.816e^-5	0.702	UPSTREAM Fmr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19690553	2R_19690553_SNP [dm3] 2R_23803030_SNP [dm6]	G	A	5.845e^-5	0.702	UTR_3_PRIME CG30177
3R	11390402	3R_11390402_SNP [dm3] 3R_15564680_SNP [dm6]	T	C	5.915e^-5	0.702	INTERGENIC
2R	9766125	2R_9766125_SNP [dm3] 2R_13878620_SNP [dm6]	A	G	5.917e^-5	0.702	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7110979	2R_7110979_SNP [dm3] 2R_11223474_SNP [dm6]	G	T	5.946e^-5	0.702	UTR_5_PRIME CG7737 DOWNSTREAM Syx6 INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3R	19705667	3R_19705667_DEL [dm3] 3R_23879945_DEL [dm6]	AGGTATATTAC...	A	5.956e^-5	0.702	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17089742	2R_17089742_SNP [dm3] 2R_21202237_SNP [dm6]	A	T	6.020e^-5	0.705	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16667914	2R_16667914_SNP [dm3] 2R_20780409_SNP [dm6]	G	A	6.053e^-5	0.705	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7148040	3R_7148040_SNP [dm3] 3R_11322318_SNP [dm6]	C	T	6.126e^-5	0.705	INTERGENIC
3R	27150888	3R_27150888_SNP [dm3] 3R_31325166_SNP [dm6]	A	G	6.201e^-5	0.705	INTRON CG34347
3R	22466833	3R_22466833_DEL [dm3] 3R_26641111_DEL [dm6]	TTTCCAT	T	6.241e^-5	0.705	DOWNSTREAM TwdlD INTERGENIC
2L	776171	2L_776171_SNP [dm3] 2L_776171_SNP [dm6]	C	T	6.261e^-5	0.705	UPSTREAM CG13946 INTERGENIC
2R	18117881	2R_18117881_MNP [dm3] 2R_22230376_MNP [dm6]	AGG	CAC	6.311e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10175892	2R_10175892_SNP [dm3] 2R_14288387_SNP [dm6]	A	C	6.365e^-5	0.705	UPSTREAM Ih INTRON Ih
X	19971726	X_19971726_SNP [dm3] X_20077693_SNP [dm6]	A	G	6.435e^-5	0.705	INTERGENIC
3R	5887459	3R_5887459_SNP [dm3] 3R_10061737_SNP [dm6]	T	A	6.489e^-5	0.705	UPSTREAM CG33630 DOWNSTREAM Npc2c EXON CR45205 & 1 other
3R	26034992	3R_26034992_SNP [dm3] 3R_30209270_SNP [dm6]	A	G	6.498e^-5	0.705	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26034996	3R_26034996_SNP [dm3] 3R_30209274_SNP [dm6]	T	C	6.537e^-5	0.705	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3319125	X_3319125_SNP [dm3] X_3425092_SNP [dm6]	T	C	6.625e^-5	0.705	INTRON CR44999 & 1 other
2R	12755496	2R_12755496_SNP [dm3] 2R_16867991_SNP [dm6]	G	C	6.668e^-5	0.705	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24598413	3R_24598413_SNP [dm3] 3R_28772691_SNP [dm6]	G	A	6.723e^-5	0.705	INTERGENIC
3R	26035006	3R_26035006_INS [dm3] 3R_30209284_INS [dm6]	A	AG	6.728e^-5	0.705	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6995302	2R_6995302_SNP [dm3] 2R_11107797_SNP [dm6]	T	A	6.776e^-5	0.705	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17564376	2R_17564376_SNP [dm3] 2R_21676871_SNP [dm6]	G	C	6.790e^-5	0.705	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16754020	X_16754020_SNP [dm3] X_16859987_SNP [dm6]	T	C	6.803e^-5	0.705	INTRON CG13003
3L	2107251	3L_2107251_SNP [dm3] 3L_2107251_SNP [dm6]	G	T	6.905e^-5	0.705	INTRON sls	TF binding site BDTNP1_TFBS_dl
2R	19790341	2R_19790341_SNP [dm3] 2R_23902818_SNP [dm6]	A	G	6.915e^-5	0.705	SYNONYMOUS_CODING Lpt UPSTREAM CG13562
3R	13297983	3R_13297983_INS [dm3] 3R_17472261_INS [dm6]	T	TT	6.976e^-5	0.705	INTERGENIC
2L	13212661	2L_13212661_SNP [dm3] 2L_13212661_SNP [dm6]	A	T	6.991e^-5	0.705	NON_SYNONYMOUS_CODING kek4 UPSTREAM CG15482 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7309766	3R_7309766_SNP [dm3] 3R_11484044_SNP [dm6]	C	T	7.026e^-5	0.705	INTERGENIC
2R	20438207	2R_20438207_SNP [dm3] 2R_24550684_SNP [dm6]	A	T	7.042e^-5	0.705	INTRON CG4622 & 1 other
X	8291549	X_8291549_SNP [dm3] X_8397516_SNP [dm6]	A	C	7.096e^-5	0.705	NON_SYNONYMOUS_CODING CG15345
3R	21030869	3R_21030869_SNP [dm3] 3R_25205147_SNP [dm6]	C	T	7.131e^-5	0.705	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2L	3262966	2L_3262966_SNP [dm3] 2L_3262966_SNP [dm6]	G	C	7.155e^-5	0.705	UPSTREAM CR45338 INTERGENIC
2R	16667773	2R_16667773_SNP [dm3] 2R_20780268_SNP [dm6]	T	G	7.179e^-5	0.705	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2L	7036096	2L_7036096_SNP [dm3] 2L_7036096_SNP [dm6]	C	T	7.194e^-5	0.705	INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9917524	3R_9917524_SNP [dm3] 3R_14091802_SNP [dm6]	C	T	7.222e^-5	0.705	DOWNSTREAM CCHa1 INTRON Npc2b
3R	20440372	3R_20440372_INS [dm3] 3R_24614650_INS [dm6]	T	TG	7.242e^-5	0.705	INTRON mld
2R	12056137	2R_12056137_SNP [dm3] 2R_16168632_SNP [dm6]	A	T	7.256e^-5	0.705	NON_SYNONYMOUS_CODING lbk DOWNSTREAM CG8435	TF binding site mE1_TFBS_cad
3L	13677785	3L_13677785_SNP [dm3] 3L_13684685_SNP [dm6]	C	A	7.276e^-5	0.705	INTRON bru-3
2L	11077097	2L_11077097_SNP [dm3] 2L_11077097_SNP [dm6]	T	A	7.295e^-5	0.705	INTRON AstC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19689430	2R_19689430_SNP [dm3] 2R_23801907_SNP [dm6]	C	A	7.455e^-5	0.715	NON_SYNONYMOUS_CODING CG30177	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13677784	3L_13677784_SNP [dm3] 3L_13684684_SNP [dm6]	G	T	7.493e^-5	0.715	INTRON bru-3
2R	15241183	2R_15241183_SNP [dm3] 2R_19353678_SNP [dm6]	G	C	7.516e^-5	0.715	INTRON Rgk1
2R	6995229	2R_6995229_SNP [dm3] 2R_11107724_SNP [dm6]	A	T	7.620e^-5	0.717	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19971058	X_19971058_SNP [dm3] X_20077025_SNP [dm6]	C	T	7.775e^-5	0.717	INTERGENIC
3R	24824036	3R_24824036_SNP [dm3] 3R_28998314_SNP [dm6]	C	T	7.785e^-5	0.717	INTRON wat
2L	15092161	2L_15092161_SNP [dm3] 2L_15092161_SNP [dm6]	T	C	7.786e^-5	0.717	SYNONYMOUS_CODING CG15270
3R	26564587	3R_26564587_SNP [dm3] 3R_30738865_SNP [dm6]	A	C	7.803e^-5	0.717	INTERGENIC
2L	22004333	2L_22004333_SNP [dm3] 2L_22004333_SNP [dm6]	G	A	7.868e^-5	0.717	INTERGENIC	transposable element FlyBase
X	12168353	X_12168353_DEL [dm3] X_12274320_DEL [dm6]	TACTGGT	T	7.898e^-5	0.717	UPSTREAM CG45603 INTRON Ten-a
2R	4496311	2R_4496311_SNP [dm3] 2R_8608806_SNP [dm6]	C	A	7.925e^-5	0.717	INTRON rgr
3R	7709869	3R_7709869_SNP [dm3] 3R_11884147_SNP [dm6]	C	A	7.947e^-5	0.717	SYNONYMOUS_CODING mthl5 INTRON CG31368
2R	9058350	2R_9058350_SNP [dm3] 2R_13170845_SNP [dm6]	G	A	7.990e^-5	0.717	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3R	17308750	3R_17308750_SNP [dm3] 3R_21483028_SNP [dm6]	G	A	7.998e^-5	0.717	NON_SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_sens
2L	10232262	2L_10232262_DEL [dm3] 2L_10232262_DEL [dm6]	GA	G	8.034e^-5	0.717	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10232265	2L_10232265_SNP [dm3] 2L_10232265_SNP [dm6]	A	G	8.034e^-5	0.717	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13639330	3L_13639330_SNP [dm3] 3L_13646230_SNP [dm6]	C	T	8.104e^-5	0.717	INTRON bru-3	TF binding site mE1_TFBS_HSA
2L	10232271	2L_10232271_SNP [dm3] 2L_10232271_SNP [dm6]	C	A	8.168e^-5	0.717	UPSTREAM eEF1delta & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14043598	3L_14043598_SNP [dm3] 3L_14050498_SNP [dm6]	G	C	8.168e^-5	0.717	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	7535518	3L_7535518_SNP [dm3] 3L_7542418_SNP [dm6]	T	C	8.181e^-5	0.717	NON_SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15092117	2L_15092117_SNP [dm3] 2L_15092117_SNP [dm6]	C	T	8.389e^-5	0.725	SPLICE_SITE_REGION CG15270 INTRON CG15270
3R	27111713	3R_27111713_DEL [dm3] 3R_31285991_DEL [dm6]	GTGCGG	A	8.391e^-5	0.725	INTERGENIC
X	3319195	X_3319195_DEL [dm3] X_3425162_DEL [dm6]	CGAAA	C	8.395e^-5	0.725	INTRON CR44999 & 1 other
3R	21038015	3R_21038015_SNP [dm3] 3R_25212293_SNP [dm6]	C	T	8.462e^-5	0.725	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16695604	3R_16695604_SNP [dm3] 3R_20869882_SNP [dm6]	G	C	8.463e^-5	0.725	INTERGENIC
X	3319187	X_3319187_DEL [dm3] X_3425154_DEL [dm6]	ATGAGATG	A	8.538e^-5	0.726	INTRON CR44999 & 1 other
2R	16956262	2R_16956262_SNP [dm3] 2R_21068757_SNP [dm6]	A	C	8.557e^-5	0.726	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12070583	3L_12070583_SNP [dm3] 3L_12077483_SNP [dm6]	G	A	8.757e^-5	0.732	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9562999	X_9562999_INS [dm3] X_9668966_INS [dm6]	A	AT	8.816e^-5	0.732	UTR_3_PRIME nej DOWNSTREAM nej
2R	9058472	2R_9058472_SNP [dm3] 2R_13170967_SNP [dm6]	G	A	8.828e^-5	0.732	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14330900	3L_14330900_SNP [dm3] 3L_14337800_SNP [dm6]	A	T	8.860e^-5	0.732	INTRON fz
2R	14118787	2R_14118787_SNP [dm3] 2R_18231282_SNP [dm6]	T	C	8.873e^-5	0.732	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12399770	2L_12399770_SNP [dm3] 2L_12399770_SNP [dm6]	T	C	8.958e^-5	0.732	INTRON Pkd2
2L	12340567	2L_12340567_SNP [dm3] 2L_12340567_SNP [dm6]	T	C	8.971e^-5	0.732	INTERGENIC
3L	2694765	3L_2694765_SNP [dm3] 3L_2694765_SNP [dm6]	T	C	8.974e^-5	0.732	INTRON Fife
3R	25410944	3R_25410944_SNP [dm3] 3R_29585222_SNP [dm6]	C	T	8.984e^-5	0.732	INTERGENIC
3R	6933456	3R_6933456_SNP [dm3] 3R_11107734_SNP [dm6]	C	A	9.226e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22100626	3L_22100626_SNP [dm3] 3L_22107526_SNP [dm6]	C	A	9.386e^-5	0.744	INTERGENIC
2R	3364668	2R_3364668_SNP [dm3] 2R_7477163_SNP [dm6]	C	T	9.410e^-5	0.744	UPSTREAM Aldh-III INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26041857	3R_26041857_SNP [dm3] 3R_30216135_SNP [dm6]	G	A	9.420e^-5	0.744	UPSTREAM CecC INTERGENIC
2R	13185719	2R_13185719_SNP [dm3] 2R_17298214_SNP [dm6]	C	G	9.456e^-5	0.744	INTRON mbl
3L	13677781	3L_13677781_INS [dm3] 3L_13684681_INS [dm6]	T	TATTGTAATATATTATATAT...	9.587e^-5	0.744	INTRON bru-3
3R	21518163	3R_21518163_SNP [dm3] 3R_25692441_SNP [dm6]	G	A	9.619e^-5	0.744	INTERGENIC
2R	15593447	2R_15593447_SNP [dm3] 2R_19705942_SNP [dm6]	G	A	9.705e^-5	0.744	INTERGENIC	regulatory region REDfly_CRMs
2L	22915292	2L_22915292_SNP [dm3] 2L_23022560_SNP [dm6]	C	A	9.723e^-5	0.744	INTRON Cht3
2R	17089857	2R_17089857_SNP [dm3] 2R_21202352_SNP [dm6]	A	C	9.756e^-5	0.744	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7535084	3L_7535084_SNP [dm3] 3L_7541984_SNP [dm6]	G	A	9.787e^-5	0.744	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6284752	3R_6284752_SNP [dm3] 3R_10459030_SNP [dm6]	A	G	9.810e^-5	0.744	INTERGENIC
3R	27173347	3R_27173347_SNP [dm3] 3R_31347625_SNP [dm6]	T	C	9.820e^-5	0.744	INTRON CG34347
2R	16667893	2R_16667893_SNP [dm3] 2R_20780388_SNP [dm6]	A	G	9.875e^-5	0.744	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15747883	2R_15747883_INS [dm3] 2R_19860378_INS [dm6]	T	TGTAT	9.955e^-5	0.744	UPSTREAM CR44570 INTRON CR44571
3R	15839063	3R_15839063_SNP [dm3] 3R_20013341_SNP [dm6]	T	A	9.998e^-5	0.744	UPSTREAM CG4836 INTRON CG17190
3R	10828948	3R_10828948_SNP [dm3] 3R_15003226_SNP [dm6]	C	A	1.007e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16667884	2R_16667884_SNP [dm3] 2R_20780379_SNP [dm6]	A	G	1.011e^-4	0.744	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17089871	2R_17089871_SNP [dm3] 2R_21202366_SNP [dm6]	A	T	1.012e^-4	0.744	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8908200	2R_8908200_SNP [dm3] 2R_13020695_SNP [dm6]	C	T	1.018e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9562019	3L_9562019_SNP [dm3] 3L_9568919_SNP [dm6]	G	A	1.023e^-4	0.744	INTRON CG42673
2R	8902862	2R_8902862_SNP [dm3] 2R_13015357_SNP [dm6]	G	T	1.024e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12300285	2R_12300285_SNP [dm3] 2R_16412780_SNP [dm6]	T	C	1.026e^-4	0.744	INTRON Sema-2b
2R	951888	2R_951888_SNP [dm3] 2R_5064383_SNP [dm6]	A	G	1.029e^-4	0.744	DOWNSTREAM TpnC41C INTERGENIC
3R	22466883	3R_22466883_SNP [dm3] 3R_26641161_SNP [dm6]	C	T	1.030e^-4	0.744	DOWNSTREAM TwdlD INTERGENIC
X	16631867	X_16631867_SNP [dm3] X_16737834_SNP [dm6]	T	G	1.034e^-4	0.744	UPSTREAM TwdlZ INTRON CG9634
3L	17132478	3L_17132478_SNP [dm3] 3L_17139378_SNP [dm6]	A	G	1.039e^-4	0.744	INTRON Rbp6
2R	17087208	2R_17087208_SNP [dm3] 2R_21199703_SNP [dm6]	C	G	1.044e^-4	0.744	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	15845867	3R_15845867_SNP [dm3] 3R_20020145_SNP [dm6]	C	A	1.046e^-4	0.744	INTRON CG4433
3L	8019557	3L_8019557_SNP [dm3] 3L_8026457_SNP [dm6]	T	G	1.046e^-4	0.744	INTRON nmo
3R	27281690	3R_27281690_SNP [dm3] 3R_31455968_SNP [dm6]	C	A	1.052e^-4	0.744	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9917481	3R_9917481_SNP [dm3] 3R_14091759_SNP [dm6]	T	C	1.055e^-4	0.744	DOWNSTREAM CCHa1 INTRON Npc2b
X	6307731	X_6307731_SNP [dm3] X_6413698_SNP [dm6]	C	A	1.057e^-4	0.744	INTERGENIC
2L	3232931	2L_3232931_SNP [dm3] 2L_3232931_SNP [dm6]	G	C	1.065e^-4	0.744	INTERGENIC
3L	21162980	3L_21162980_SNP [dm3] 3L_21169880_SNP [dm6]	G	A	1.071e^-4	0.744	INTRON Ac78C	TF binding site mE1_TFBS_cad
3R	12840081	3R_12840081_INS [dm3] 3R_17014359_INS [dm6]	A	AA	1.079e^-4	0.744	UPSTREAM Pxd INTERGENIC
2L	4690860	2L_4690860_SNP [dm3] 2L_4690860_SNP [dm6]	C	T	1.079e^-4	0.744	UPSTREAM CG3251 INTERGENIC
3R	24179210	3R_24179210_SNP [dm3] 3R_28353488_SNP [dm6]	C	T	1.079e^-4	0.744	SYNONYMOUS_CODING Or98b
2R	10555266	2R_10555266_SNP [dm3] 2R_14667761_SNP [dm6]	A	C	1.082e^-4	0.744	UPSTREAM CG12860 & 1 other INTERGENIC
3L	10799035	3L_10799035_SNP [dm3] 3L_10805935_SNP [dm6]	C	T	1.084e^-4	0.744	UPSTREAM CR44347 INTERGENIC
2R	17089852	2R_17089852_SNP [dm3] 2R_21202347_SNP [dm6]	A	T	1.086e^-4	0.744	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4691180	2L_4691180_SNP [dm3] 2L_4691180_SNP [dm6]	G	T	1.093e^-4	0.744	UPSTREAM CG3251 INTERGENIC
2R	9526020	2R_9526020_DEL [dm3] 2R_13638515_DEL [dm6]	TTAAATACGTT...	T	1.098e^-4	0.744	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16683000	3L_16683000_SNP [dm3] 3L_16689900_SNP [dm6]	G	A	1.098e^-4	0.744	INTRON Lasp & 2 others EXON CR45179
3R	12857210	3R_12857210_SNP [dm3] 3R_17031488_SNP [dm6]	C	T	1.121e^-4	0.744	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
3L	3766908	3L_3766908_SNP [dm3] 3L_3766908_SNP [dm6]	A	G	1.125e^-4	0.744	INTRON CG32264	TF binding site mE1_TFBS_bab1
2R	89612	2R_89612_SNP [dm3] 2R_4202107_SNP [dm6]	G	T	1.126e^-4	0.744	INTERGENIC
3L	18430477	3L_18430477_SNP [dm3] 3L_18437377_SNP [dm6]	A	C	1.133e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12340371	2L_12340371_SNP [dm3] 2L_12340371_SNP [dm6]	A	T	1.134e^-4	0.744	DOWNSTREAM CG31862 INTERGENIC
X	19970273	X_19970273_SNP [dm3] X_20076240_SNP [dm6]	C	G	1.137e^-4	0.744	INTERGENIC
3R	17555395	3R_17555395_SNP [dm3] 3R_21729673_SNP [dm6]	C	T	1.150e^-4	0.744	EXON CR43096
X	13488567	X_13488567_SNP [dm3] X_13594534_SNP [dm6]	T	A	1.151e^-4	0.744	INTRON up
X	19742853	X_19742853_DEL [dm3] X_19848820_DEL [dm6]	CC	C	1.153e^-4	0.744	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16670126	2R_16670126_SNP [dm3] 2R_20782621_SNP [dm6]	G	A	1.154e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_sens
2L	1504489	2L_1504489_SNP [dm3] 2L_1504489_SNP [dm6]	G	A	1.163e^-4	0.744	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26035243	3R_26035243_SNP [dm3] 3R_30209521_SNP [dm6]	A	G	1.170e^-4	0.744	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25875947	3R_25875947_SNP [dm3] 3R_30050225_SNP [dm6]	G	A	1.170e^-4	0.744	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22650859	2L_22650859_SNP [dm3] 2L_22758127_SNP [dm6]	T	A	1.170e^-4	0.744	INTERGENIC
2L	12340603	2L_12340603_INS [dm3] 2L_12340603_INS [dm6]	T	TTTT	1.187e^-4	0.744	INTERGENIC
2R	15419080	2R_15419080_SNP [dm3] 2R_19531575_SNP [dm6]	C	G	1.194e^-4	0.744	INTRON sm
2R	13719065	2R_13719065_SNP [dm3] 2R_17831560_SNP [dm6]	T	C	1.196e^-4	0.744	INTRON grh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10232267	2L_10232267_SNP [dm3] 2L_10232267_SNP [dm6]	C	T	1.202e^-4	0.744	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	6157360	X_6157360_SNP [dm3] X_6263327_SNP [dm6]	G	A	1.211e^-4	0.744	INTRON schlank
X	3303778	X_3303778_SNP [dm3] X_3409745_SNP [dm6]	G	C	1.213e^-4	0.744	INTRON CR44999 & 1 other
2R	9350645	2R_9350645_SNP [dm3] 2R_13463140_SNP [dm6]	A	T	1.213e^-4	0.744	INTRON arr
3R	17288165	3R_17288165_SNP [dm3] 3R_21462443_SNP [dm6]	T	C	1.220e^-4	0.744	INTERGENIC
3R	6285050	3R_6285050_SNP [dm3] 3R_10459328_SNP [dm6]	G	T	1.220e^-4	0.744	INTERGENIC
2R	18065519	2R_18065519_SNP [dm3] 2R_22178014_SNP [dm6]	G	A	1.225e^-4	0.744	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3R	26039844	3R_26039844_SNP [dm3] 3R_30214122_SNP [dm6]	T	A	1.230e^-4	0.744	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
3L	2360670	3L_2360670_SNP [dm3] 3L_2360670_SNP [dm6]	T	G	1.230e^-4	0.744	SYNONYMOUS_CODING CG13801
2R	15244542	2R_15244542_SNP [dm3] 2R_19357037_SNP [dm6]	A	G	1.237e^-4	0.744	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2264646	2L_2264646_SNP [dm3] 2L_2264646_SNP [dm6]	G	A	1.242e^-4	0.744	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	17089819	2R_17089819_SNP [dm3] 2R_21202314_SNP [dm6]	A	G	1.269e^-4	0.744	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10279408	2R_10279408_SNP [dm3] 2R_14391903_SNP [dm6]	G	A	1.274e^-4	0.744	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
3R	15839529	3R_15839529_SNP [dm3] 3R_20013807_SNP [dm6]	G	A	1.274e^-4	0.744	UPSTREAM CG4836 & 1 other INTERGENIC
2R	17089888	2R_17089888_SNP [dm3] 2R_21202383_SNP [dm6]	A	T	1.275e^-4	0.744	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22120806	3R_22120806_SNP [dm3] 3R_26295084_SNP [dm6]	A	G	1.275e^-4	0.744	INTERGENIC
3L	13758276	3L_13758276_SNP [dm3] 3L_13765176_SNP [dm6]	T	C	1.280e^-4	0.744	INTRON bru-3
2L	10892902	2L_10892902_SNP [dm3] 2L_10892902_SNP [dm6]	T	G	1.280e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	5887411	3R_5887411_SNP [dm3] 3R_10061689_SNP [dm6]	G	A	1.280e^-4	0.744	UPSTREAM CG33630 DOWNSTREAM Npc2c EXON CR45205 & 1 other
2L	9840834	2L_9840834_DEL [dm3] 2L_9840834_DEL [dm6]	ACATTA	A	1.284e^-4	0.744	INTRON nAChRalpha6
3R	20334443	3R_20334443_SNP [dm3] 3R_24508721_SNP [dm6]	T	G	1.285e^-4	0.744	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	11081718	3R_11081718_INS [dm3] 3R_15255996_INS [dm6]	G	GG	1.285e^-4	0.744	UTR_3_PRIME CG42404
3R	21518257	3R_21518257_SNP [dm3] 3R_25692535_SNP [dm6]	T	G	1.288e^-4	0.744	INTERGENIC
3R	21088746	3R_21088746_SNP [dm3] 3R_25263024_SNP [dm6]	A	G	1.298e^-4	0.744	SYNONYMOUS_CODING CG11858 UPSTREAM CG10425 DOWNSTREAM Aats-gln
3R	17555401	3R_17555401_SNP [dm3] 3R_21729679_SNP [dm6]	G	T	1.298e^-4	0.744	EXON CR43096
3R	26035045	3R_26035045_SNP [dm3] 3R_30209323_SNP [dm6]	T	C	1.302e^-4	0.744	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11851489	3R_11851489_SNP [dm3] 3R_16025767_SNP [dm6]	A	G	1.305e^-4	0.744	UPSTREAM pnr INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10543884	3L_10543884_SNP [dm3] 3L_10550784_SNP [dm6]	A	G	1.314e^-4	0.744	INTRON A2bp1
X	2694660	X_2694660_SNP [dm3] X_2800627_SNP [dm6]	A	C	1.321e^-4	0.744	INTRON kirre
3L	4630805	3L_4630805_SNP [dm3] 3L_4630805_SNP [dm6]	G	T	1.321e^-4	0.744	INTRON axo
3R	14626995	3R_14626995_SNP [dm3] 3R_18801273_SNP [dm6]	C	A	1.321e^-4	0.744	UTR_3_PRIME CG18208
X	10313530	X_10313530_MNP [dm3] X_10419497_MNP [dm6]	ACA	GTT	1.323e^-4	0.744	INTRON CG32683
3R	22120920	3R_22120920_SNP [dm3] 3R_26295198_SNP [dm6]	G	T	1.327e^-4	0.744	INTERGENIC
3L	8407439	3L_8407439_SNP [dm3] 3L_8414339_SNP [dm6]	G	T	1.327e^-4	0.744	SPLICE_SITE_REGION Exo70 DOWNSTREAM mtrm INTRON Exo70
3R	17288128	3R_17288128_SNP [dm3] 3R_21462406_SNP [dm6]	T	C	1.333e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5671697	2R_5671697_SNP [dm3] 2R_9784192_SNP [dm6]	T	A	1.336e^-4	0.744	INTRON CG1688
2R	5671698	2R_5671698_SNP [dm3] 2R_9784193_SNP [dm6]	T	A	1.336e^-4	0.744	INTRON CG1688
3L	17132449	3L_17132449_SNP [dm3] 3L_17139349_SNP [dm6]	A	G	1.336e^-4	0.744	INTRON Rbp6
3R	16225036	3R_16225036_SNP [dm3] 3R_20399314_SNP [dm6]	A	T	1.338e^-4	0.744	DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7465087	2L_7465087_SNP [dm3] 2L_7465087_SNP [dm6]	G	A	1.338e^-4	0.744	INTERGENIC
2L	1504324	2L_1504324_SNP [dm3] 2L_1504324_SNP [dm6]	T	C	1.338e^-4	0.744	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10587111	2L_10587111_SNP [dm3] 2L_10587111_SNP [dm6]	T	G	1.339e^-4	0.744	INTRON Trim9	TF binding site mE1_TFBS_chinmo
3R	19615842	3R_19615842_SNP [dm3] 3R_23790120_SNP [dm6]	A	C	1.347e^-4	0.744	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20438205	2R_20438205_SNP [dm3] 2R_24550682_SNP [dm6]	T	C	1.348e^-4	0.744	INTRON CG4622 & 1 other
3R	15839309	3R_15839309_SNP [dm3] 3R_20013587_SNP [dm6]	T	C	1.348e^-4	0.744	UPSTREAM CG4836 & 1 other INTERGENIC
2L	3211514	2L_3211514_SNP [dm3] 2L_3211514_SNP [dm6]	C	T	1.352e^-4	0.744	DOWNSTREAM CR45336 INTERGENIC
3R	21053272	3R_21053272_SNP [dm3] 3R_25227550_SNP [dm6]	T	A	1.356e^-4	0.744	INTRON Cad96Cb
2R	17087207	2R_17087207_SNP [dm3] 2R_21199702_SNP [dm6]	C	G	1.358e^-4	0.744	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	21570633	3L_21570633_SNP [dm3] 3L_21577533_SNP [dm6]	G	A	1.360e^-4	0.744	UPSTREAM CR43939 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	24837301	3R_24837301_SNP [dm3] 3R_29011579_SNP [dm6]	C	T	1.362e^-4	0.744	INTRON wat
X	3319130	X_3319130_SNP [dm3] X_3425097_SNP [dm6]	A	T	1.364e^-4	0.744	INTRON CR44999 & 1 other
X	13488573	X_13488573_SNP [dm3] X_13594540_SNP [dm6]	T	C	1.367e^-4	0.744	INTRON up
X	3966481	X_3966481_SNP [dm3] X_4072448_SNP [dm6]	T	C	1.371e^-4	0.744	INTERGENIC
3R	23537596	3R_23537596_SNP [dm3] 3R_27711874_SNP [dm6]	C	A	1.379e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19615776	3R_19615776_SNP [dm3] 3R_23790054_SNP [dm6]	A	T	1.380e^-4	0.744	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	1.392e^-4	0.744	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
3R	25396898	3R_25396898_SNP [dm3] 3R_29571176_SNP [dm6]	G	A	1.401e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17132439	3L_17132439_INS [dm3] 3L_17139339_INS [dm6]	C	CACACAC	1.408e^-4	0.744	INTRON Rbp6
2L	16108420	2L_16108420_SNP [dm3] 2L_16108420_SNP [dm6]	G	C	1.408e^-4	0.744	INTERGENIC
3L	3382671	3L_3382671_SNP [dm3] 3L_3382671_SNP [dm6]	A	C	1.411e^-4	0.744	INTERGENIC
3L	11777281	3L_11777281_SNP [dm3] 3L_11784181_SNP [dm6]	G	A	1.414e^-4	0.744	SYNONYMOUS_CODING Pi3K68D
3R	18505888	3R_18505888_SNP [dm3] 3R_22680166_SNP [dm6]	G	C	1.421e^-4	0.744	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9303327	3L_9303327_SNP [dm3] 3L_9310227_SNP [dm6]	A	C	1.424e^-4	0.744	INTERGENIC
2R	13766733	2R_13766733_SNP [dm3] 2R_17879228_SNP [dm6]	T	G	1.428e^-4	0.744	SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19904873	3R_19904873_SNP [dm3] 3R_24079151_SNP [dm6]	T	C	1.433e^-4	0.744	INTRON 4EHP
3R	24026782	3R_24026782_SNP [dm3] 3R_28201060_SNP [dm6]	G	A	1.441e^-4	0.744	INTRON CG34354
3R	23566617	3R_23566617_SNP [dm3] 3R_27740895_SNP [dm6]	T	C	1.444e^-4	0.744	INTRON Ets98B
3L	13677772	3L_13677772_INS [dm3] 3L_13684672_INS [dm6]	T	TTTTACA	1.447e^-4	0.744	INTRON bru-3
3L	7535783	3L_7535783_SNP [dm3] 3L_7542683_SNP [dm6]	A	T	1.448e^-4	0.744	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6993044	2R_6993044_DEL [dm3] 2R_11105539_DEL [dm6]	TT	T	1.457e^-4	0.744	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6292769	2L_6292769_SNP [dm3] 2L_6292769_SNP [dm6]	T	C	1.462e^-4	0.744	INTRON Ddr
2L	2991130	2L_2991130_SNP [dm3] 2L_2991130_SNP [dm6]	T	C	1.466e^-4	0.744	SYNONYMOUS_CODING okr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9899334	3R_9899334_SNP [dm3] 3R_14073612_SNP [dm6]	T	A	1.467e^-4	0.744	INTRON foxo
2R	12501857	2R_12501857_SNP [dm3] 2R_16614352_SNP [dm6]	A	T	1.475e^-4	0.744	INTRON CG5065
3L	1871204	3L_1871204_SNP [dm3] 3L_1871204_SNP [dm6]	G	A	1.476e^-4	0.744	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2019760	3L_2019760_SNP [dm3] 3L_2019760_SNP [dm6]	C	T	1.478e^-4	0.744	DOWNSTREAM CG42357 INTERGENIC
3R	24959077	3R_24959077_SNP [dm3] 3R_29133355_SNP [dm6]	C	T	1.479e^-4	0.744	SYNONYMOUS_CODING Vha100-1 INTRON Vha100-1
2L	10531032	2L_10531032_SNP [dm3] 2L_10531032_SNP [dm6]	C	A	1.483e^-4	0.744	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
3R	14797420	3R_14797420_SNP [dm3] 3R_18971698_SNP [dm6]	A	G	1.489e^-4	0.744	INTRON CG42613 & 1 other
3L	3769439	3L_3769439_INS [dm3] 3L_3769439_INS [dm6]	A	AG	1.494e^-4	0.744	INTRON CG32264
3L	17132448	3L_17132448_SNP [dm3] 3L_17139348_SNP [dm6]	G	A	1.495e^-4	0.744	INTRON Rbp6
X	5763413	X_5763413_SNP [dm3] X_5869380_SNP [dm6]	A	G	1.502e^-4	0.744	NON_SYNONYMOUS_CODING CG15764
2L	9753268	2L_9753268_SNP [dm3] 2L_9753268_SNP [dm6]	A	G	1.502e^-4	0.744	INTERGENIC
3R	25887157	3R_25887157_SNP [dm3] 3R_30061435_SNP [dm6]	C	A	1.510e^-4	0.744	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26189071	3R_26189071_SNP [dm3] 3R_30363349_SNP [dm6]	C	T	1.511e^-4	0.744	UTR_3_PRIME hdc
3L	7535979	3L_7535979_SNP [dm3] 3L_7542879_SNP [dm6]	A	G	1.516e^-4	0.744	UPSTREAM CG32376 INTERGENIC
3L	1015925	3L_1015925_SNP [dm3] 3L_1015925_SNP [dm6]	A	T	1.518e^-4	0.744	INTRON trio
2R	5671421	2R_5671421_SNP [dm3] 2R_9783916_SNP [dm6]	T	G	1.519e^-4	0.744	INTRON CG1688
2R	5671467	2R_5671467_SNP [dm3] 2R_9783962_SNP [dm6]	A	T	1.519e^-4	0.744	INTRON CG1688
2L	2717136	2L_2717136_SNP [dm3] 2L_2717136_SNP [dm6]	A	T	1.525e^-4	0.744	INTRON CG31690
2R	5668732	2R_5668732_SNP [dm3] 2R_9781227_SNP [dm6]	C	A	1.527e^-4	0.744	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9875898	2L_9875898_DEL [dm3] 2L_9875898_DEL [dm6]	AATACAAAA	A	1.530e^-4	0.744	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
2L	10551758	2L_10551758_SNP [dm3] 2L_10551758_SNP [dm6]	C	T	1.533e^-4	0.744	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	18442903	3L_18442903_SNP [dm3] 3L_18449803_SNP [dm6]	G	A	1.536e^-4	0.744	INTERGENIC
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	1.538e^-4	0.744	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3R	6255457	3R_6255457_SNP [dm3] 3R_10429735_SNP [dm6]	T	A	1.543e^-4	0.744	INTERGENIC
3R	2732666	3R_2732666_SNP [dm3] 3R_6906944_SNP [dm6]	A	T	1.551e^-4	0.744	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23872990	3R_23872990_SNP [dm3] 3R_28047268_SNP [dm6]	T	C	1.551e^-4	0.744	UPSTREAM CG34362 INTRON CG34362
3R	23872991	3R_23872991_SNP [dm3] 3R_28047269_SNP [dm6]	T	G	1.551e^-4	0.744	UPSTREAM CG34362 INTRON CG34362
3R	21111235	3R_21111235_DEL [dm3] 3R_25285513_DEL [dm6]	CC	T	1.552e^-4	0.744	UTR_5_PRIME CG31104 DOWNSTREAM CG31300
2L	10464626	2L_10464626_SNP [dm3] 2L_10464626_SNP [dm6]	A	G	1.558e^-4	0.744	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2R	9450588	2R_9450588_SNP [dm3] 2R_13563083_SNP [dm6]	G	A	1.569e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11776952	3L_11776952_SNP [dm3] 3L_11783852_SNP [dm6]	C	T	1.574e^-4	0.744	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9526014	2R_9526014_SNP [dm3] 2R_13638509_SNP [dm6]	C	T	1.575e^-4	0.744	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9058470	2R_9058470_SNP [dm3] 2R_13170965_SNP [dm6]	A	C	1.577e^-4	0.744	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	20815330	3R_20815330_SNP [dm3] 3R_24989608_SNP [dm6]	G	C	1.585e^-4	0.744	INTRON tnc
2R	14555140	2R_14555140_SNP [dm3] 2R_18667635_SNP [dm6]	T	C	1.587e^-4	0.744	UTR_3_PRIME edl	TF binding site mE1_TFBS_HSA
3L	13639325	3L_13639325_SNP [dm3] 3L_13646225_SNP [dm6]	G	A	1.591e^-4	0.744	INTRON bru-3	TF binding site mE1_TFBS_HSA
3L	9355757	3L_9355757_SNP [dm3] 3L_9362657_SNP [dm6]	T	G	1.596e^-4	0.744	SYNONYMOUS_CODING CG34456 UTR_3_PRIME Klp67A DOWNSTREAM CG34455
3R	22108796	3R_22108796_SNP [dm3] 3R_26283074_SNP [dm6]	T	G	1.599e^-4	0.744	INTERGENIC
2L	885738	2L_885738_SNP [dm3] 2L_885738_SNP [dm6]	G	C	1.603e^-4	0.744	UPSTREAM CG15824 INTERGENIC
3R	12808692	3R_12808692_SNP [dm3] 3R_16982970_SNP [dm6]	G	C	1.603e^-4	0.744	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16683025	3L_16683025_SNP [dm3] 3L_16689925_SNP [dm6]	T	A	1.604e^-4	0.744	DOWNSTREAM CR45179 INTRON Lasp & 2 others
3R	13289122	3R_13289122_SNP [dm3] 3R_17463400_SNP [dm6]	T	C	1.607e^-4	0.744	INTERGENIC
3R	27021812	3R_27021812_SNP [dm3] 3R_31196090_SNP [dm6]	G	A	1.619e^-4	0.747	UPSTREAM mesh & 1 other INTERGENIC
3R	16160310	3R_16160310_SNP [dm3] 3R_20334588_SNP [dm6]	T	C	1.624e^-4	0.747	INTERGENIC
3R	15839291	3R_15839291_SNP [dm3] 3R_20013569_SNP [dm6]	A	G	1.626e^-4	0.747	UPSTREAM CG4836 & 1 other INTERGENIC
X	17439088	X_17439088_DEL [dm3] X_17545055_DEL [dm6]	TAAATAAAAATAGCGAGGCA...	T	1.635e^-4	0.748	INTRON CG43658
3L	17446838	3L_17446838_SNP [dm3] 3L_17453738_SNP [dm6]	A	G	1.639e^-4	0.748	UTR_3_PRIME CG18265
3R	1154954	3R_1154954_SNP [dm3] 3R_5329232_SNP [dm6]	T	G	1.645e^-4	0.748	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2694837	3L_2694837_SNP [dm3] 3L_2694837_SNP [dm6]	G	A	1.658e^-4	0.748	INTRON Fife
X	4719885	X_4719885_SNP [dm3] X_4825852_SNP [dm6]	C	T	1.666e^-4	0.748	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14324830	3L_14324830_SNP [dm3] 3L_14331730_SNP [dm6]	G	T	1.667e^-4	0.748	INTRON fz
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	1.672e^-4	0.748	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13688217	2L_13688217_SNP [dm3] 2L_13688217_SNP [dm6]	G	A	1.676e^-4	0.748	INTRON CG31814
3L	16387907	3L_16387907_SNP [dm3] 3L_16394807_SNP [dm6]	T	C	1.693e^-4	0.748	UTR_5_PRIME Grp UPSTREAM Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
3R	6911167	3R_6911167_SNP [dm3] 3R_11085445_SNP [dm6]	G	A	1.695e^-4	0.748	EXON CR44940
2R	14416269	2R_14416269_SNP [dm3] 2R_18528764_SNP [dm6]	T	C	1.696e^-4	0.748	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14729786	2L_14729786_SNP [dm3] 2L_14729786_SNP [dm6]	C	T	1.705e^-4	0.748	SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16450134	2L_16450134_SNP [dm3] 2L_16450134_SNP [dm6]	T	C	1.706e^-4	0.748	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	16450143	2L_16450143_SNP [dm3] 2L_16450143_SNP [dm6]	A	C	1.706e^-4	0.748	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2R	7007519	2R_7007519_DEL [dm3] 2R_11120014_DEL [dm6]	TT	T	1.716e^-4	0.748	UTR_3_PRIME Cyp12d1-p
2L	10530889	2L_10530889_SNP [dm3] 2L_10530889_SNP [dm6]	T	C	1.722e^-4	0.748	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
3R	26035271	3R_26035271_SNP [dm3] 3R_30209549_SNP [dm6]	C	T	1.729e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16108418	2L_16108418_SNP [dm3] 2L_16108418_SNP [dm6]	C	A	1.730e^-4	0.748	INTERGENIC
2L	10530894	2L_10530894_SNP [dm3] 2L_10530894_SNP [dm6]	T	C	1.730e^-4	0.748	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
2R	27505	2R_27505_SNP [dm3] 2R_4140000_SNP [dm6]	T	C	1.730e^-4	0.748	INTERGENIC
X	15249476	X_15249476_SNP [dm3] X_15355443_SNP [dm6]	C	G	1.733e^-4	0.748	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3L	13780404	3L_13780404_SNP [dm3] 3L_13787304_SNP [dm6]	A	C	1.739e^-4	0.748	INTRON bru-3
2R	7004530	2R_7004530_SNP [dm3] 2R_11117025_SNP [dm6]	T	A	1.742e^-4	0.748	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9840851	2L_9840851_SNP [dm3] 2L_9840851_SNP [dm6]	G	T	1.751e^-4	0.748	INTRON nAChRalpha6
3R	13683661	3R_13683661_SNP [dm3] 3R_17857939_SNP [dm6]	T	C	1.754e^-4	0.748	SYNONYMOUS_CODING tinc
3L	10775196	3L_10775196_SNP [dm3] 3L_10782096_SNP [dm6]	T	C	1.754e^-4	0.748	INTERGENIC
2L	6839744	2L_6839744_SNP [dm3] 2L_6839744_SNP [dm6]	G	A	1.755e^-4	0.748	DOWNSTREAM sens-2 INTERGENIC
3L	7535165	3L_7535165_SNP [dm3] 3L_7542065_SNP [dm6]	A	T	1.762e^-4	0.748	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19970297	X_19970297_SNP [dm3] X_20076264_SNP [dm6]	G	A	1.763e^-4	0.748	INTERGENIC
2R	9525967	2R_9525967_SNP [dm3] 2R_13638462_SNP [dm6]	A	G	1.766e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21052784	3R_21052784_SNP [dm3] 3R_25227062_SNP [dm6]	A	C	1.769e^-4	0.748	INTRON Cad96Cb
3R	17288209	3R_17288209_SNP [dm3] 3R_21462487_SNP [dm6]	T	G	1.771e^-4	0.748	INTERGENIC
3R	8709684	3R_8709684_SNP [dm3] 3R_12883962_SNP [dm6]	G	A	1.774e^-4	0.748	INTERGENIC
3L	10347043	3L_10347043_SNP [dm3] 3L_10353943_SNP [dm6]	A	T	1.778e^-4	0.748	INTRON CR44327
2R	15107370	2R_15107370_SNP [dm3] 2R_19219865_SNP [dm6]	C	T	1.782e^-4	0.748	INTRON hppy
X	1161739	X_1161739_SNP [dm3] X_1267706_SNP [dm6]	C	A	1.790e^-4	0.748	INTRON Atf3
3L	3660462	3L_3660462_SNP [dm3] 3L_3660462_SNP [dm6]	C	G	1.793e^-4	0.748	DOWNSTREAM CG43098 INTERGENIC
3L	13784843	3L_13784843_INS [dm3] 3L_13791743_INS [dm6]	T	TCTTTCAAT	1.800e^-4	0.748	INTRON bru-3
2L	20233279	2L_20233279_SNP [dm3] 2L_20233279_SNP [dm6]	C	T	1.802e^-4	0.748	INTERGENIC
2R	16955914	2R_16955914_SNP [dm3] 2R_21068409_SNP [dm6]	G	A	1.809e^-4	0.748	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
3R	19687688	3R_19687688_SNP [dm3] 3R_23861966_SNP [dm6]	G	A	1.816e^-4	0.748	SPLICE_SITE_REGION Pli SYNONYMOUS_CODING Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	510397	X_510397_SNP [dm3] X_616364_SNP [dm6]	A	G	1.816e^-4	0.748	INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	16823477	3L_16823477_SNP [dm3] 3L_16830377_SNP [dm6]	C	G	1.817e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15682932	2R_15682932_SNP [dm3] 2R_19795427_SNP [dm6]	T	G	1.817e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24823973	3R_24823973_DEL [dm3] 3R_28998251_DEL [dm6]	AA	A	1.819e^-4	0.748	INTRON wat
3L	4054572	3L_4054572_SNP [dm3] 3L_4054572_SNP [dm6]	T	C	1.824e^-4	0.748	INTRON CG1136
2R	15129621	2R_15129621_SNP [dm3] 2R_19242116_SNP [dm6]	T	C	1.829e^-4	0.748	INTRON cora
2L	1932969	2L_1932969_SNP [dm3] 2L_1932969_SNP [dm6]	A	T	1.831e^-4	0.748	INTRON CG7337
3L	6460048	3L_6460048_SNP [dm3] 3L_6466948_SNP [dm6]	T	A	1.837e^-4	0.748	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	19995698	2L_19995698_SNP [dm3] 2L_19995698_SNP [dm6]	C	G	1.838e^-4	0.748	INTRON CG43861
2R	15244344	2R_15244344_SNP [dm3] 2R_19356839_SNP [dm6]	A	T	1.838e^-4	0.748	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	20600585	2L_20600585_SNP [dm3] 2L_20600585_SNP [dm6]	C	G	1.840e^-4	0.748	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4691418	2L_4691418_SNP [dm3] 2L_4691418_SNP [dm6]	G	A	1.845e^-4	0.748	UPSTREAM CG3251 INTERGENIC
2R	11848846	2R_11848846_SNP [dm3] 2R_15961341_SNP [dm6]	C	T	1.850e^-4	0.748	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14796886	2R_14796886_SNP [dm3] 2R_18909381_SNP [dm6]	C	T	1.859e^-4	0.748	SYNONYMOUS_CODING Vha100-3 INTRON sano
2R	17800253	2R_17800253_SNP [dm3] 2R_21912748_SNP [dm6]	T	G	1.859e^-4	0.748	INTRON Fili
2R	6999812	2R_6999812_SNP [dm3] 2R_11112307_SNP [dm6]	A	G	1.863e^-4	0.748	INTRON luna
X	3351082	X_3351082_SNP [dm3] X_3457049_SNP [dm6]	T	C	1.863e^-4	0.748	INTRON CR44999
2R	7007339	2R_7007339_SNP [dm3] 2R_11119834_SNP [dm6]	T	C	1.864e^-4	0.748	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
2R	14118817	2R_14118817_SNP [dm3] 2R_18231312_SNP [dm6]	A	T	1.877e^-4	0.748	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	27150885	3R_27150885_SNP [dm3] 3R_31325163_SNP [dm6]	T	C	1.881e^-4	0.748	INTRON CG34347
3R	16695733	3R_16695733_SNP [dm3] 3R_20870011_SNP [dm6]	A	G	1.891e^-4	0.748	INTERGENIC
3L	18454113	3L_18454113_SNP [dm3] 3L_18461013_SNP [dm6]	T	C	1.899e^-4	0.748	UTR_5_PRIME CG32196 DOWNSTREAM CG4306	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	4572297	X_4572297_SNP [dm3] X_4678264_SNP [dm6]	C	T	1.903e^-4	0.748	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11396211	2R_11396211_SNP [dm3] 2R_15508706_SNP [dm6]	G	A	1.906e^-4	0.748	DOWNSTREAM Ir52d INTERGENIC
3L	10775210	3L_10775210_SNP [dm3] 3L_10782110_SNP [dm6]	A	C	1.912e^-4	0.748	INTERGENIC
3L	2022364	3L_2022364_SNP [dm3] 3L_2022364_SNP [dm6]	T	C	1.914e^-4	0.748	UPSTREAM CG42357 INTRON CG42356
2R	6994880	2R_6994880_SNP [dm3] 2R_11107375_SNP [dm6]	A	T	1.916e^-4	0.748	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8902870	2R_8902870_SNP [dm3] 2R_13015365_SNP [dm6]	G	A	1.918e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3369991	3L_3369991_SNP [dm3] 3L_3369991_SNP [dm6]	A	T	1.931e^-4	0.748	DOWNSTREAM YT521-B & 1 other INTERGENIC
3R	20626590	3R_20626590_SNP [dm3] 3R_24800868_SNP [dm6]	C	T	1.932e^-4	0.748	SYNONYMOUS_CODING polybromo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10468193	3L_10468193_SNP [dm3] 3L_10475093_SNP [dm6]	C	T	1.933e^-4	0.748	INTERGENIC
2L	10531318	2L_10531318_SNP [dm3] 2L_10531318_SNP [dm6]	T	C	1.938e^-4	0.748	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
3L	13227540	3L_13227540_SNP [dm3] 3L_13234440_SNP [dm6]	T	C	1.943e^-4	0.748	INTRON caps
3R	21178074	3R_21178074_SNP [dm3] 3R_25352352_SNP [dm6]	G	T	1.945e^-4	0.748	DOWNSTREAM Fur1 INTRON Fur1
2R	6372516	2R_6372516_SNP [dm3] 2R_10485011_SNP [dm6]	T	G	1.948e^-4	0.748	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19206622	3R_19206622_SNP [dm3] 3R_23380900_SNP [dm6]	G	A	1.949e^-4	0.748	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	20661325	3R_20661325_SNP [dm3] 3R_24835603_SNP [dm6]	C	A	1.950e^-4	0.748	UPSTREAM CR45216 & 1 other INTRON sosie	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10956563	2R_10956563_SNP [dm3] 2R_15069058_SNP [dm6]	G	T	1.974e^-4	0.748	INTERGENIC
3R	23604446	3R_23604446_SNP [dm3] 3R_27778724_SNP [dm6]	C	T	1.976e^-4	0.748	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	12859032	3L_12859032_SNP [dm3] 3L_12865932_SNP [dm6]	T	A	1.976e^-4	0.748	INTERGENIC
X	12168289	X_12168289_SNP [dm3] X_12274256_SNP [dm6]	T	A	1.986e^-4	0.748	UPSTREAM CG45603 INTRON Ten-a
2L	1026142	2L_1026142_SNP [dm3] 2L_1026142_SNP [dm6]	G	A	1.993e^-4	0.748	UTR_3_PRIME CG4375 INTRON IA-2
2R	4495911	2R_4495911_SNP [dm3] 2R_8608406_SNP [dm6]	C	G	1.997e^-4	0.748	NON_SYNONYMOUS_CODING rgr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26865785	3R_26865785_SNP [dm3] 3R_31040063_SNP [dm6]	A	G	2.008e^-4	0.748	UTR_5_PRIME CanA1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6372276	2R_6372276_SNP [dm3] 2R_10484771_SNP [dm6]	T	C	2.014e^-4	0.748	START_GAINED pre-lola-G UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26034781	3R_26034781_SNP [dm3] 3R_30209059_SNP [dm6]	C	A	2.024e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21741823	3L_21741823_SNP [dm3] 3L_21748723_SNP [dm6]	G	A	2.028e^-4	0.748	INTRON Syn1
2R	8902871	2R_8902871_SNP [dm3] 2R_13015366_SNP [dm6]	C	T	2.029e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19482483	3R_19482483_SNP [dm3] 3R_23656761_SNP [dm6]	G	A	2.034e^-4	0.748	INTRON CG31145
3R	15846724	3R_15846724_SNP [dm3] 3R_20021002_SNP [dm6]	G	T	2.038e^-4	0.748	UTR_5_PRIME CG4433 UPSTREAM psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9059537	2R_9059537_SNP [dm3] 2R_13172032_SNP [dm6]	G	T	2.041e^-4	0.748	INTRON AGBE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10224006	X_10224006_SNP [dm3] X_10329973_SNP [dm6]	G	C	2.043e^-4	0.748	UPSTREAM Gip DOWNSTREAM CG15306 INTERGENIC
3R	12516603	3R_12516603_SNP [dm3] 3R_16690881_SNP [dm6]	A	C	2.047e^-4	0.748	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13589035	2L_13589035_SNP [dm3] 2L_13589035_SNP [dm6]	T	C	2.050e^-4	0.748	INTRON kuz
2R	9118337	2R_9118337_SNP [dm3] 2R_13230832_SNP [dm6]	T	C	2.054e^-4	0.748	NON_SYNONYMOUS_CODING fsd UPSTREAM Pex13 DOWNSTREAM CG4670	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	846636	2R_846636_SNP [dm3] 2R_4959131_SNP [dm6]	C	G	2.064e^-4	0.748	INTRON Ir41a	transposable element FlyBase
3R	6921925	3R_6921925_SNP [dm3] 3R_11096203_SNP [dm6]	T	C	2.067e^-4	0.748	INTERGENIC
3L	14290408	3L_14290408_SNP [dm3] 3L_14297308_SNP [dm6]	A	T	2.070e^-4	0.748	INTRON fz
X	19742677	X_19742677_SNP [dm3] X_19848644_SNP [dm6]	G	A	2.070e^-4	0.748	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11398167	3R_11398167_SNP [dm3] 3R_15572445_SNP [dm6]	C	T	2.071e^-4	0.748	INTERGENIC
3R	24155901	3R_24155901_SNP [dm3] 3R_28330179_SNP [dm6]	A	G	2.071e^-4	0.748	INTRON larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3L	4701186	3L_4701186_SNP [dm3] 3L_4701186_SNP [dm6]	C	T	2.085e^-4	0.748	INTRON RhoGEF64C
3L	12533103	3L_12533103_SNP [dm3] 3L_12540003_SNP [dm6]	G	A	2.090e^-4	0.748	SYNONYMOUS_CODING sowah INTRON sowah	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8019989	3L_8019989_SNP [dm3] 3L_8026889_SNP [dm6]	G	A	2.092e^-4	0.748	INTRON nmo
2L	9753242	2L_9753242_SNP [dm3] 2L_9753242_SNP [dm6]	G	A	2.102e^-4	0.748	INTERGENIC
4	141694	4_141694_SNP [dm3] 4_121068_SNP [dm6]	T	A	2.112e^-4	0.748	SYNONYMOUS_CODING Ank
3R	19232908	3R_19232908_SNP [dm3] 3R_23407186_SNP [dm6]	T	C	2.127e^-4	0.748	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	2.131e^-4	0.748	INTRON CG34114
3L	6970227	3L_6970227_SNP [dm3] 3L_6977127_SNP [dm6]	C	T	2.132e^-4	0.748	INTRON Galphai & 1 other	TF binding site BDTNP1_TFBS_dl
2R	9058787	2R_9058787_SNP [dm3] 2R_13171282_SNP [dm6]	A	T	2.141e^-4	0.748	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6780654	3R_6780654_SNP [dm3] 3R_10954932_SNP [dm6]	C	T	2.146e^-4	0.748	INTERGENIC
2L	10378448	2L_10378448_SNP [dm3] 2L_10378448_SNP [dm6]	A	C	2.157e^-4	0.748	INTRON dpr19
3L	14324884	3L_14324884_SNP [dm3] 3L_14331784_SNP [dm6]	T	C	2.159e^-4	0.748	INTRON fz
3R	6933037	3R_6933037_SNP [dm3] 3R_11107315_SNP [dm6]	G	C	2.167e^-4	0.748	INTERGENIC
3R	19232890	3R_19232890_SNP [dm3] 3R_23407168_SNP [dm6]	T	C	2.170e^-4	0.748	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16802426	2R_16802426_SNP [dm3] 2R_20914921_SNP [dm6]	C	G	2.173e^-4	0.748	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	17288337	3R_17288337_SNP [dm3] 3R_21462615_SNP [dm6]	G	A	2.175e^-4	0.748	INTERGENIC
3R	17288347	3R_17288347_SNP [dm3] 3R_21462625_SNP [dm6]	A	G	2.175e^-4	0.748	INTERGENIC
3R	19183213	3R_19183213_SNP [dm3] 3R_23357491_SNP [dm6]	C	T	2.176e^-4	0.748	SYNONYMOUS_CODING Sec13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8018377	3L_8018377_SNP [dm3] 3L_8025277_SNP [dm6]	T	C	2.176e^-4	0.748	INTRON nmo
2R	16955408	2R_16955408_SNP [dm3] 2R_21067903_SNP [dm6]	T	C	2.177e^-4	0.748	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	10783146	3L_10783146_SNP [dm3] 3L_10790046_SNP [dm6]	T	A	2.193e^-4	0.748	DOWNSTREAM CR44545 INTERGENIC
3R	24278869	3R_24278869_SNP [dm3] 3R_28453147_SNP [dm6]	C	T	2.196e^-4	0.748	INTRON beat-VI
2R	14074510	2R_14074510_SNP [dm3] 2R_18187005_SNP [dm6]	A	T	2.199e^-4	0.748	SYNONYMOUS_CODING CG33958 UPSTREAM CG14499
2R	17085774	2R_17085774_SNP [dm3] 2R_21198269_SNP [dm6]	C	G	2.202e^-4	0.748	NON_SYNONYMOUS_CODING Lapsyn
3L	13780395	3L_13780395_SNP [dm3] 3L_13787295_SNP [dm6]	C	T	2.207e^-4	0.748	INTRON bru-3
2L	11734394	2L_11734394_SNP [dm3] 2L_11734394_SNP [dm6]	T	A	2.209e^-4	0.748	INTERGENIC
3R	22466299	3R_22466299_SNP [dm3] 3R_26640577_SNP [dm6]	A	G	2.220e^-4	0.748	SYNONYMOUS_CODING TwdlD
2L	13598583	2L_13598583_SNP [dm3] 2L_13598583_SNP [dm6]	T	C	2.241e^-4	0.748	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23873459	3R_23873459_SNP [dm3] 3R_28047737_SNP [dm6]	A	G	2.247e^-4	0.748	INTRON CG34362
3L	14043225	3L_14043225_SNP [dm3] 3L_14050125_SNP [dm6]	C	T	2.248e^-4	0.748	UPSTREAM blue INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2491317	3L_2491317_SNP [dm3] 3L_2491317_SNP [dm6]	T	C	2.248e^-4	0.748	SYNONYMOUS_CODING CG1146 INTRON CG45186	TF binding site mE1_TFBS_chinmo
3R	19028180	3R_19028180_SNP [dm3] 3R_23202458_SNP [dm6]	G	A	2.248e^-4	0.748	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	19657607	X_19657607_SNP [dm3] X_19763574_SNP [dm6]	A	C	2.254e^-4	0.748	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	6080712	X_6080712_SNP [dm3] X_6186679_SNP [dm6]	G	A	2.262e^-4	0.748	INTRON Ca-alpha1T
3R	16227635	3R_16227635_SNP [dm3] 3R_20401913_SNP [dm6]	T	C	2.272e^-4	0.748	INTRON Gfrl
3L	12873586	3L_12873586_SNP [dm3] 3L_12880486_SNP [dm6]	A	G	2.278e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20797459	3R_20797459_SNP [dm3] 3R_24971737_SNP [dm6]	A	T	2.278e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1029975	2L_1029975_DEL [dm3] 2L_1029975_DEL [dm6]	AA	A	2.282e^-4	0.748	INTRON IA-2
3R	14731203	3R_14731203_SNP [dm3] 3R_18905481_SNP [dm6]	A	T	2.288e^-4	0.748	INTRON CG14292	TF binding site BDTNP1_TFBS_dl
3L	8054793	3L_8054793_SNP [dm3] 3L_8061693_SNP [dm6]	C	T	2.291e^-4	0.748	UPSTREAM tRNA:CR32360 INTERGENIC
2L	12340592	2L_12340592_INS [dm3] 2L_12340592_INS [dm6]	T	TTCTC	2.296e^-4	0.748	INTERGENIC
X	12088025	X_12088025_SNP [dm3] X_12193992_SNP [dm6]	T	G	2.303e^-4	0.748	NON_SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7795381	3L_7795381_SNP [dm3] 3L_7802281_SNP [dm6]	T	A	2.306e^-4	0.748	INTRON CG32369
3L	14324825	3L_14324825_SNP [dm3] 3L_14331725_SNP [dm6]	A	G	2.306e^-4	0.748	INTRON fz
3L	2886505	3L_2886505_SNP [dm3] 3L_2886505_SNP [dm6]	G	T	2.309e^-4	0.748	INTRON spz5	TF binding site mE1_TFBS_bab1
3R	19033798	3R_19033798_SNP [dm3] 3R_23208076_SNP [dm6]	G	A	2.312e^-4	0.748	INTRON cnc
X	872598	X_872598_SNP [dm3] X_978565_SNP [dm6]	C	T	2.318e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20742930	3R_20742930_SNP [dm3] 3R_24917208_SNP [dm6]	C	T	2.323e^-4	0.748	SYNONYMOUS_CODING CG44254 UPSTREAM CG11168 INTRON PIG-S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19969133	X_19969133_SNP [dm3] X_20075100_SNP [dm6]	A	G	2.327e^-4	0.748	INTERGENIC
3R	25431885	3R_25431885_SNP [dm3] 3R_29606163_SNP [dm6]	G	A	2.336e^-4	0.748	INTRON alph
3R	4488775	3R_4488775_SNP [dm3] 3R_8663053_SNP [dm6]	A	T	2.340e^-4	0.748	SPLICE_SITE_REGION p INTRON p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12339560	2L_12339560_DEL [dm3] 2L_12339560_DEL [dm6]	TTACTATT	T	2.341e^-4	0.748	DOWNSTREAM CG31862 INTERGENIC
X	19968957	X_19968957_SNP [dm3] X_20074924_SNP [dm6]	T	C	2.342e^-4	0.748	INTERGENIC
X	19969069	X_19969069_SNP [dm3] X_20075036_SNP [dm6]	C	T	2.342e^-4	0.748	INTERGENIC
X	19969086	X_19969086_SNP [dm3] X_20075053_SNP [dm6]	T	G	2.342e^-4	0.748	INTERGENIC
X	19969139	X_19969139_SNP [dm3] X_20075106_SNP [dm6]	T	A	2.342e^-4	0.748	INTERGENIC
X	19969184	X_19969184_SNP [dm3] X_20075151_SNP [dm6]	A	T	2.342e^-4	0.748	INTERGENIC
3L	10783154	3L_10783154_SNP [dm3] 3L_10790054_SNP [dm6]	A	C	2.345e^-4	0.748	DOWNSTREAM CR44545 INTERGENIC
2R	4496050	2R_4496050_SNP [dm3] 2R_8608545_SNP [dm6]	C	T	2.346e^-4	0.748	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15057135	3L_15057135_SNP [dm3] 3L_15064035_SNP [dm6]	C	T	2.351e^-4	0.748	INTRON Sytbeta	TF binding site mE1_TFBS_inv
2L	12340608	2L_12340608_SNP [dm3] 2L_12340608_SNP [dm6]	T	C	2.355e^-4	0.748	INTERGENIC
2R	846863	2R_846863_SNP [dm3] 2R_4959358_SNP [dm6]	G	C	2.359e^-4	0.748	INTRON Ir41a	transposable element FlyBase
3L	12717169	3L_12717169_SNP [dm3] 3L_12724069_SNP [dm6]	C	T	2.361e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20198493	3R_20198493_SNP [dm3] 3R_24372771_SNP [dm6]	G	A	2.369e^-4	0.748	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14760363	3R_14760363_SNP [dm3] 3R_18934641_SNP [dm6]	A	T	2.375e^-4	0.748	INTRON CG42613
3R	26039050	3R_26039050_SNP [dm3] 3R_30213328_SNP [dm6]	T	C	2.390e^-4	0.748	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
2R	20438034	2R_20438034_SNP [dm3] 2R_24550511_SNP [dm6]	C	T	2.391e^-4	0.748	INTRON CG4622 & 1 other
3R	24159366	3R_24159366_SNP [dm3] 3R_28333644_SNP [dm6]	C	A	2.392e^-4	0.748	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9059466	2R_9059466_SNP [dm3] 2R_13171961_SNP [dm6]	G	A	2.395e^-4	0.748	INTRON AGBE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19217934	3R_19217934_DEL [dm3] 3R_23392212_DEL [dm6]	GCG	G	2.407e^-4	0.748	INTERGENIC
3R	23663767	3R_23663767_SNP [dm3] 3R_27838045_SNP [dm6]	G	A	2.413e^-4	0.748	INTRON CG34353
2L	12698977	2L_12698977_SNP [dm3] 2L_12698977_SNP [dm6]	C	G	2.413e^-4	0.748	UTR_3_PRIME CG17036 DOWNSTREAM CG17036 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23873001	3R_23873001_SNP [dm3] 3R_28047279_SNP [dm6]	A	T	2.414e^-4	0.748	UPSTREAM CG34362 INTRON CG34362
2L	2549397	2L_2549397_SNP [dm3] 2L_2549397_SNP [dm6]	G	A	2.414e^-4	0.748	INTERGENIC
3L	12195824	3L_12195824_SNP [dm3] 3L_12202724_SNP [dm6]	A	G	2.417e^-4	0.748	INTRON Adk1
3L	7796285	3L_7796285_SNP [dm3] 3L_7803185_SNP [dm6]	G	A	2.425e^-4	0.748	INTRON CG32369	TF binding site mE1_TFBS_cad
3L	11702873	3L_11702873_SNP [dm3] 3L_11709773_SNP [dm6]	C	A	2.431e^-4	0.748	NON_SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26035015	3R_26035015_SNP [dm3] 3R_30209293_SNP [dm6]	G	A	2.437e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18878519	3L_18878519_INS [dm3] 3L_18885419_INS [dm6]	T	TAAAAAATTTTTTGAA...	2.440e^-4	0.748	UPSTREAM CG3961 INTRON CG3961
3R	26915277	3R_26915277_SNP [dm3] 3R_31089555_SNP [dm6]	C	A	2.440e^-4	0.748	INTERGENIC
2L	15767827	2L_15767827_SNP [dm3] 2L_15767827_SNP [dm6]	T	C	2.443e^-4	0.748	NON_SYNONYMOUS_CODING wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6969859	3L_6969859_SNP [dm3] 3L_6976759_SNP [dm6]	T	C	2.444e^-4	0.748	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2096818	2L_2096818_SNP [dm3] 2L_2096818_SNP [dm6]	C	A	2.449e^-4	0.748	INTRON dpr3
2L	4869476	2L_4869476_SNP [dm3] 2L_4869476_SNP [dm6]	G	A	2.454e^-4	0.748	INTRON pog
2L	15093108	2L_15093108_SNP [dm3] 2L_15093108_SNP [dm6]	C	T	2.460e^-4	0.748	INTRON CG15270
2R	10163177	2R_10163177_SNP [dm3] 2R_14275672_SNP [dm6]	A	G	2.463e^-4	0.748	UPSTREAM Ih DOWNSTREAM conv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19969123	X_19969123_SNP [dm3] X_20075090_SNP [dm6]	T	G	2.468e^-4	0.748	INTERGENIC
2L	13229608	2L_13229608_SNP [dm3] 2L_13229608_SNP [dm6]	C	T	2.471e^-4	0.748	UPSTREAM CG16815 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	2882693	2L_2882693_SNP [dm3] 2L_2882693_SNP [dm6]	A	G	2.472e^-4	0.748	SPLICE_SITE_REGION NTPase SYNONYMOUS_CODING NTPase UTR_5_PRIME NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21876645	3R_21876645_SNP [dm3] 3R_26050923_SNP [dm6]	C	T	2.475e^-4	0.748	SYNONYMOUS_CODING Exo84	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21043101	3R_21043101_SNP [dm3] 3R_25217379_SNP [dm6]	T	C	2.476e^-4	0.748	INTRON CG31106
2L	6231001	2L_6231001_SNP [dm3] 2L_6231001_SNP [dm6]	G	A	2.479e^-4	0.748	UPSTREAM CR44823 INTERGENIC
3R	25878785	3R_25878785_SNP [dm3] 3R_30053063_SNP [dm6]	T	C	2.482e^-4	0.748	SYNONYMOUS_CODING CG7946 UPSTREAM CG15528 DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12340573	2L_12340573_SNP [dm3] 2L_12340573_SNP [dm6]	T	C	2.490e^-4	0.748	INTERGENIC
2L	5134794	2L_5134794_SNP [dm3] 2L_5134794_SNP [dm6]	A	G	2.490e^-4	0.748	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	15845895	3R_15845895_SNP [dm3] 3R_20020173_SNP [dm6]	C	G	2.500e^-4	0.748	INTRON CG4433
2L	16428767	2L_16428767_SNP [dm3] 2L_16428767_SNP [dm6]	A	G	2.503e^-4	0.748	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9886570	3L_9886570_SNP [dm3] 3L_9893470_SNP [dm6]	A	G	2.512e^-4	0.748	DOWNSTREAM CG14164 & 1 other INTRON CG6709 & 1 other
3L	9886595	3L_9886595_SNP [dm3] 3L_9893495_SNP [dm6]	G	A	2.512e^-4	0.748	DOWNSTREAM CG14164 & 1 other INTRON CG6709 & 1 other
3L	12737352	3L_12737352_SNP [dm3] 3L_12744252_SNP [dm6]	A	C	2.512e^-4	0.748	SYNONYMOUS_CODING CG32112
2R	26908	2R_26908_SNP [dm3] 2R_4139403_SNP [dm6]	T	A	2.513e^-4	0.748	INTERGENIC
3L	12612269	3L_12612269_SNP [dm3] 3L_12619169_SNP [dm6]	G	A	2.515e^-4	0.748	INTRON caup
2L	3046668	2L_3046668_SNP [dm3] 2L_3046668_SNP [dm6]	C	A	2.532e^-4	0.748	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11124503	2R_11124503_SNP [dm3] 2R_15236998_SNP [dm6]	T	G	2.533e^-4	0.748	INTRON Fs	TF binding site BDTNP1_TFBS_da
2L	22892069	2L_22892069_SNP [dm3] 2L_22999337_SNP [dm6]	A	T	2.539e^-4	0.748	DOWNSTREAM Cht3 INTERGENIC
3L	9637249	3L_9637249_SNP [dm3] 3L_9644149_SNP [dm6]	A	T	2.548e^-4	0.748	START_GAINED CG33696 UTR_5_PRIME CG33696 INTRON fry
3R	17288200	3R_17288200_SNP [dm3] 3R_21462478_SNP [dm6]	A	T	2.554e^-4	0.748	INTERGENIC
2R	12366595	2R_12366595_SNP [dm3] 2R_16479090_SNP [dm6]	C	T	2.559e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11970451	2R_11970451_SNP [dm3] 2R_16082946_SNP [dm6]	A	G	2.561e^-4	0.748	UTR_3_PRIME Dg
2R	11999915	2R_11999915_SNP [dm3] 2R_16112410_SNP [dm6]	C	T	2.563e^-4	0.748	SYNONYMOUS_CODING Asph
3R	21042982	3R_21042982_SNP [dm3] 3R_25217260_SNP [dm6]	C	T	2.571e^-4	0.748	SYNONYMOUS_CODING CG31106
3R	27111655	3R_27111655_INS [dm3] 3R_31285933_INS [dm6]	T	GTATTG	2.576e^-4	0.748	INTERGENIC
2R	13514946	2R_13514946_SNP [dm3] 2R_17627441_SNP [dm6]	T	C	2.578e^-4	0.748	INTRON CG10936
2L	2940137	2L_2940137_SNP [dm3] 2L_2940137_SNP [dm6]	T	C	2.580e^-4	0.748	INTRON lilli
2L	12340595	2L_12340595_INS [dm3] 2L_12340595_INS [dm6]	G	GGCTA	2.580e^-4	0.748	INTERGENIC
3R	22466323	3R_22466323_SNP [dm3] 3R_26640601_SNP [dm6]	T	C	2.583e^-4	0.748	SYNONYMOUS_CODING TwdlD
3R	23852854	3R_23852854_DEL [dm3] 3R_28027132_DEL [dm6]	CAATGCATTGAACA...	C	2.584e^-4	0.748	INTRON CG34362
X	14442895	X_14442895_SNP [dm3] X_14548862_SNP [dm6]	T	C	2.584e^-4	0.748	INTERGENIC
2R	8939919	2R_8939919_SNP [dm3] 2R_13052414_SNP [dm6]	C	T	2.587e^-4	0.748	INTERGENIC
3L	12722118	3L_12722118_SNP [dm3] 3L_12729018_SNP [dm6]	C	T	2.592e^-4	0.748	INTERGENIC
3L	14493716	3L_14493716_SNP [dm3] 3L_14500616_SNP [dm6]	A	G	2.593e^-4	0.748	INTRON bbg
3L	14043231	3L_14043231_SNP [dm3] 3L_14050131_SNP [dm6]	G	A	2.594e^-4	0.748	UPSTREAM blue INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4082776	2R_4082776_SNP [dm3] 2R_8195271_SNP [dm6]	G	A	2.600e^-4	0.748	INTRON LRP1
2R	9061649	2R_9061649_SNP [dm3] 2R_13174144_SNP [dm6]	C	T	2.604e^-4	0.748	SYNONYMOUS_CODING AGBE	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18505539	3R_18505539_SNP [dm3] 3R_22679817_SNP [dm6]	C	G	2.609e^-4	0.748	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4385157	3R_4385157_SNP [dm3] 3R_8559435_SNP [dm6]	A	G	2.622e^-4	0.748	DOWNSTREAM pch2 INTERGENIC
2R	10175861	2R_10175861_INS [dm3] 2R_14288356_INS [dm6]	T	TCAAATA	2.629e^-4	0.748	UPSTREAM Ih INTRON Ih
2R	10175886	2R_10175886_SNP [dm3] 2R_14288381_SNP [dm6]	C	G	2.629e^-4	0.748	UPSTREAM Ih INTRON Ih
3L	9180908	3L_9180908_SNP [dm3] 3L_9187808_SNP [dm6]	C	A	2.630e^-4	0.748	INTERGENIC
2L	11145088	2L_11145088_SNP [dm3] 2L_11145088_SNP [dm6]	A	G	2.633e^-4	0.748	NON_SYNONYMOUS_CODING CG31867 INTRON Gyc32E
2L	1504355	2L_1504355_SNP [dm3] 2L_1504355_SNP [dm6]	T	A	2.638e^-4	0.748	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4601530	3L_4601530_SNP [dm3] 3L_4601530_SNP [dm6]	G	A	2.639e^-4	0.748	INTRON Src64B
3R	23852962	3R_23852962_SNP [dm3] 3R_28027240_SNP [dm6]	T	C	2.655e^-4	0.748	INTRON CG34362
2R	847341	2R_847341_SNP [dm3] 2R_4959836_SNP [dm6]	C	T	2.655e^-4	0.748	INTRON Ir41a	transposable element FlyBase
3R	10496990	3R_10496990_SNP [dm3] 3R_14671268_SNP [dm6]	T	C	2.656e^-4	0.748	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15567897	2R_15567897_DEL [dm3] 2R_19680392_DEL [dm6]	CC	C	2.656e^-4	0.748	DOWNSTREAM CG15127 INTERGENIC
3R	16726380	3R_16726380_SNP [dm3] 3R_20900658_SNP [dm6]	A	C	2.661e^-4	0.748	INTERGENIC
2R	16993283	2R_16993283_SNP [dm3] 2R_21105778_SNP [dm6]	A	T	2.669e^-4	0.748	INTRON ktub
2L	9757061	2L_9757061_SNP [dm3] 2L_9757061_SNP [dm6]	G	T	2.676e^-4	0.748	INTERGENIC
3L	9239964	3L_9239964_SNP [dm3] 3L_9246864_SNP [dm6]	C	T	2.680e^-4	0.748	INTERGENIC
2L	732000	2L_732000_SNP [dm3] 2L_732000_SNP [dm6]	C	G	2.682e^-4	0.748	INTERGENIC
3R	21518256	3R_21518256_SNP [dm3] 3R_25692534_SNP [dm6]	G	C	2.685e^-4	0.748	INTERGENIC
2R	19152616	2R_19152616_SNP [dm3] 2R_23265093_SNP [dm6]	C	T	2.687e^-4	0.748	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3R	16726346	3R_16726346_SNP [dm3] 3R_20900624_SNP [dm6]	T	A	2.688e^-4	0.748	INTERGENIC
3L	8669513	3L_8669513_INS [dm3] 3L_8676413_INS [dm6]	C	CC	2.689e^-4	0.748	INTRON h	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19483410	3R_19483410_SNP [dm3] 3R_23657688_SNP [dm6]	C	T	2.693e^-4	0.748	INTRON CG31145
X	8904558	X_8904558_SNP [dm3] X_9010525_SNP [dm6]	G	A	2.693e^-4	0.748	INTRON rdgA & 1 other
3L	905161	3L_905161_SNP [dm3] 3L_905161_SNP [dm6]	A	T	2.698e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24582240	3R_24582240_SNP [dm3] 3R_28756518_SNP [dm6]	T	A	2.700e^-4	0.748	NON_SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
X	16726580	X_16726580_SNP [dm3] X_16832547_SNP [dm6]	A	T	2.702e^-4	0.748	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
3R	26035016	3R_26035016_SNP [dm3] 3R_30209294_SNP [dm6]	T	C	2.702e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	4574151	X_4574151_SNP [dm3] X_4680118_SNP [dm6]	T	C	2.702e^-4	0.748	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	19860086	3R_19860086_SNP [dm3] 3R_24034364_SNP [dm6]	C	T	2.715e^-4	0.748	UTR_3_PRIME Miro DOWNSTREAM Ime4
2L	12340600	2L_12340600_SNP [dm3] 2L_12340600_SNP [dm6]	G	A	2.717e^-4	0.748	INTERGENIC
2R	17119472	2R_17119472_SNP [dm3] 2R_21231967_SNP [dm6]	A	G	2.728e^-4	0.748	INTRON ASPP
3R	26373223	3R_26373223_SNP [dm3] 3R_30547501_SNP [dm6]	A	T	2.729e^-4	0.748	INTRON tmod
3L	19242650	3L_19242650_SNP [dm3] 3L_19249550_SNP [dm6]	A	C	2.735e^-4	0.748	INTERGENIC
2R	985824	2R_985824_SNP [dm3] 2R_5098319_SNP [dm6]	G	T	2.736e^-4	0.748	INTERGENIC	transposable element FlyBase
4	603065	4_603065_SNP [dm3] 4_582439_SNP [dm6]	A	C	2.736e^-4	0.748	UPSTREAM CG1909 INTERGENIC	transposable element FlyBase
2R	10956548	2R_10956548_SNP [dm3] 2R_15069043_SNP [dm6]	G	A	2.740e^-4	0.748	INTERGENIC
X	13837714	X_13837714_SNP [dm3] X_13943681_SNP [dm6]	T	C	2.753e^-4	0.748	INTRON mamo
2L	6231177	2L_6231177_SNP [dm3] 2L_6231177_SNP [dm6]	A	T	2.756e^-4	0.748	UPSTREAM CR44823 INTERGENIC
3R	17527090	3R_17527090_SNP [dm3] 3R_21701368_SNP [dm6]	G	C	2.760e^-4	0.748	INTRON CG31176
2R	5666776	2R_5666776_SNP [dm3] 2R_9779271_SNP [dm6]	G	T	2.760e^-4	0.748	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5668765	2R_5668765_SNP [dm3] 2R_9781260_SNP [dm6]	G	T	2.760e^-4	0.748	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25431780	3R_25431780_SNP [dm3] 3R_29606058_SNP [dm6]	A	G	2.762e^-4	0.748	INTRON alph
X	5613179	X_5613179_SNP [dm3] X_5719146_SNP [dm6]	C	G	2.764e^-4	0.748	DOWNSTREAM CG32758 INTERGENIC
2R	846859	2R_846859_SNP [dm3] 2R_4959354_SNP [dm6]	T	A	2.768e^-4	0.748	INTRON Ir41a	transposable element FlyBase
3R	21430560	3R_21430560_DEL [dm3] 3R_25604838_DEL [dm6]	GGTTATTAGATCCTAACATT...	G	2.770e^-4	0.748	UTR_3_PRIME msi INTRON ymp
2R	16665531	2R_16665531_INS [dm3] 2R_20778026_INS [dm6]	G	GTTTAG	2.771e^-4	0.748	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2R	50493	2R_50493_DEL [dm3] 2R_4162988_DEL [dm6]	TT	T	2.789e^-4	0.748	INTERGENIC
3R	22767370	3R_22767370_SNP [dm3] 3R_26941648_SNP [dm6]	A	G	2.791e^-4	0.748	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
3L	9582590	3L_9582590_SNP [dm3] 3L_9589490_SNP [dm6]	C	T	2.792e^-4	0.748	INTRON CG42673
2R	19690483	2R_19690483_SNP [dm3] 2R_23802960_SNP [dm6]	A	G	2.794e^-4	0.748	UTR_3_PRIME CG30177
3L	9560965	3L_9560965_SNP [dm3] 3L_9567865_SNP [dm6]	C	G	2.799e^-4	0.748	INTRON CG42673
3R	26039017	3R_26039017_SNP [dm3] 3R_30213295_SNP [dm6]	T	C	2.800e^-4	0.748	DOWNSTREAM CecB & 2 others INTERGENIC
2R	932361	2R_932361_SNP [dm3] 2R_5044856_SNP [dm6]	G	T	2.809e^-4	0.748	INTERGENIC	transposable element FlyBase
2R	10076037	2R_10076037_SNP [dm3] 2R_14188532_SNP [dm6]	C	A	2.813e^-4	0.748	NON_SYNONYMOUS_CODING CG30069
2L	18485434	2L_18485434_SNP [dm3] 2L_18485434_SNP [dm6]	G	A	2.813e^-4	0.748	UTR_5_PRIME CG10176 UPSTREAM CG10283	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad
3R	21503058	3R_21503058_SNP [dm3] 3R_25677336_SNP [dm6]	G	T	2.828e^-4	0.748	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
2L	12340579	2L_12340579_INS [dm3] 2L_12340579_INS [dm6]	A	ATG	2.830e^-4	0.748	INTERGENIC
X	19970102	X_19970102_SNP [dm3] X_20076069_SNP [dm6]	A	T	2.830e^-4	0.748	INTERGENIC
2R	5659670	2R_5659670_SNP [dm3] 2R_9772165_SNP [dm6]	T	C	2.831e^-4	0.748	NON_SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6465879	2L_6465879_SNP [dm3] 2L_6465879_SNP [dm6]	T	G	2.843e^-4	0.748	UPSTREAM CG16947 DOWNSTREAM CG9531 INTERGENIC
2R	11979897	2R_11979897_SNP [dm3] 2R_16092392_SNP [dm6]	C	T	2.845e^-4	0.748	INTRON Dg	TF binding site mE1_TFBS_HSA
3L	3665857	3L_3665857_SNP [dm3] 3L_3665857_SNP [dm6]	G	A	2.849e^-4	0.748	INTERGENIC
3R	21522759	3R_21522759_SNP [dm3] 3R_25697037_SNP [dm6]	T	A	2.851e^-4	0.748	INTERGENIC
3L	903649	3L_903649_SNP [dm3] 3L_903649_SNP [dm6]	T	C	2.858e^-4	0.748	UTR_3_PRIME CG13905	TF binding site BDTNP1_TFBS_twi
3L	12762278	3L_12762278_SNP [dm3] 3L_12769178_SNP [dm6]	A	T	2.858e^-4	0.748	SYNONYMOUS_CODING Hip1 DOWNSTREAM CG32113
3R	23601918	3R_23601918_SNP [dm3] 3R_27776196_SNP [dm6]	G	A	2.860e^-4	0.748	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	7047370	2R_7047370_SNP [dm3] 2R_11159865_SNP [dm6]	A	G	2.861e^-4	0.748	INTRON shn & 1 other
3R	27175161	3R_27175161_SNP [dm3] 3R_31349439_SNP [dm6]	G	T	2.867e^-4	0.748	INTRON CG34347	regulatory region REDfly_CRMs
3L	16683029	3L_16683029_INS [dm3] 3L_16689929_INS [dm6]	A	AACGAAAAATTATGAACTTG...	2.874e^-4	0.748	DOWNSTREAM CR45179 INTRON Lasp & 2 others
X	5389061	X_5389061_SNP [dm3] X_5495028_SNP [dm6]	A	G	2.886e^-4	0.748	SYNONYMOUS_CODING frma
3R	12867343	3R_12867343_SNP [dm3] 3R_17041621_SNP [dm6]	A	T	2.887e^-4	0.748	SYNONYMOUS_CODING CG5220 DOWNSTREAM CG3995
3R	14836685	3R_14836685_INS [dm3] 3R_19010963_INS [dm6]	T	TT	2.891e^-4	0.748	INTRON gukh
3R	6743626	3R_6743626_SNP [dm3] 3R_10917904_SNP [dm6]	C	T	2.896e^-4	0.748	INTERGENIC
X	8158684	X_8158684_SNP [dm3] X_8264651_SNP [dm6]	G	A	2.899e^-4	0.748	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	20571257	X_20571257_SNP [dm3] X_20700230_SNP [dm6]	A	T	2.900e^-4	0.748	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	23945250	3R_23945250_SNP [dm3] 3R_28119528_SNP [dm6]	G	A	2.902e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16422443	3L_16422443_SNP [dm3] 3L_16429343_SNP [dm6]	G	A	2.905e^-4	0.748	INTRON CG33158 & 1 other
3L	467539	3L_467539_SNP [dm3] 3L_467539_SNP [dm6]	C	G	2.907e^-4	0.748	INTRON klar
2R	8733445	2R_8733445_SNP [dm3] 2R_12845940_SNP [dm6]	A	C	2.909e^-4	0.748	DOWNSTREAM antr INTRON CG17575	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17568769	2R_17568769_DEL [dm3] 2R_21681264_DEL [dm6]	TCAGTT	T	2.910e^-4	0.748	INTRON CG30263	TF binding site mE1_TFBS_chinmo
3R	4284604	3R_4284604_SNP [dm3] 3R_8458882_SNP [dm6]	T	C	2.920e^-4	0.748	INTRON CG45263
3R	12808445	3R_12808445_SNP [dm3] 3R_16982723_SNP [dm6]	C	T	2.922e^-4	0.748	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16955436	2R_16955436_SNP [dm3] 2R_21067931_SNP [dm6]	C	A	2.923e^-4	0.748	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	12340368	2L_12340368_SNP [dm3] 2L_12340368_SNP [dm6]	G	A	2.925e^-4	0.748	DOWNSTREAM CG31862 INTERGENIC
2R	16928898	2R_16928898_SNP [dm3] 2R_21041393_SNP [dm6]	A	T	2.925e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17527093	3R_17527093_SNP [dm3] 3R_21701371_SNP [dm6]	G	C	2.925e^-4	0.748	INTRON CG31176
3R	12855249	3R_12855249_SNP [dm3] 3R_17029527_SNP [dm6]	T	C	2.927e^-4	0.748	INTRON CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24026716	3R_24026716_SNP [dm3] 3R_28200994_SNP [dm6]	A	C	2.928e^-4	0.748	INTRON CG34354
2R	9525994	2R_9525994_SNP [dm3] 2R_13638489_SNP [dm6]	A	T	2.930e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23857833	3R_23857833_SNP [dm3] 3R_28032111_SNP [dm6]	A	G	2.934e^-4	0.748	INTRON CG34362
2L	16108397	2L_16108397_SNP [dm3] 2L_16108397_SNP [dm6]	T	C	2.942e^-4	0.748	INTERGENIC
3R	6935015	3R_6935015_SNP [dm3] 3R_11109293_SNP [dm6]	C	A	2.949e^-4	0.748	INTERGENIC
3L	8328551	3L_8328551_SNP [dm3] 3L_8335451_SNP [dm6]	T	C	2.955e^-4	0.748	INTERGENIC
2R	8902974	2R_8902974_SNP [dm3] 2R_13015469_SNP [dm6]	T	C	2.972e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5669468	2R_5669468_SNP [dm3] 2R_9781963_SNP [dm6]	C	T	2.973e^-4	0.748	INTRON CG1688
3L	3361917	3L_3361917_SNP [dm3] 3L_3361917_SNP [dm6]	C	T	2.974e^-4	0.748	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	8018297	3L_8018297_SNP [dm3] 3L_8025197_SNP [dm6]	T	G	2.975e^-4	0.748	INTRON nmo
2R	9526051	2R_9526051_SNP [dm3] 2R_13638546_SNP [dm6]	T	A	2.976e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12373393	3L_12373393_SNP [dm3] 3L_12380293_SNP [dm6]	G	C	2.976e^-4	0.748	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	2.978e^-4	0.748	UPSTREAM CG12003 INTRON CG7879
2R	5666777	2R_5666777_SNP [dm3] 2R_9779272_SNP [dm6]	G	T	2.980e^-4	0.748	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14792739	2L_14792739_SNP [dm3] 2L_14792739_SNP [dm6]	A	T	2.982e^-4	0.748	INTERGENIC
2R	9525997	2R_9525997_SNP [dm3] 2R_13638492_SNP [dm6]	A	T	2.991e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3383322	3L_3383322_SNP [dm3] 3L_3383322_SNP [dm6]	C	A	2.993e^-4	0.748	INTERGENIC
3R	24155881	3R_24155881_SNP [dm3] 3R_28330159_SNP [dm6]	T	C	2.994e^-4	0.748	INTRON larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
2R	13184161	2R_13184161_SNP [dm3] 2R_17296656_SNP [dm6]	A	G	2.995e^-4	0.748	INTRON mbl
2L	7055529	2L_7055529_SNP [dm3] 2L_7055529_SNP [dm6]	G	A	2.996e^-4	0.748	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl
3L	10783176	3L_10783176_SNP [dm3] 3L_10790076_SNP [dm6]	G	C	3.018e^-4	0.748	DOWNSTREAM CR44545 INTERGENIC
2R	17086797	2R_17086797_SNP [dm3] 2R_21199292_SNP [dm6]	C	T	3.021e^-4	0.748	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	12792279	X_12792279_SNP [dm3] X_12898246_SNP [dm6]	T	A	3.022e^-4	0.748	SYNONYMOUS_CODING CG32650 UPSTREAM Pde9 DOWNSTREAM CG32649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9560970	3L_9560970_SNP [dm3] 3L_9567870_SNP [dm6]	G	A	3.028e^-4	0.748	INTRON CG42673
X	5964908	X_5964908_SNP [dm3] X_6070875_SNP [dm6]	G	C	3.029e^-4	0.748	SYNONYMOUS_CODING Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	6805552	3L_6805552_SNP [dm3] 3L_6812452_SNP [dm6]	T	C	3.029e^-4	0.748	INTERGENIC
3L	17132504	3L_17132504_SNP [dm3] 3L_17139404_SNP [dm6]	G	A	3.032e^-4	0.748	INTRON Rbp6
X	6726996	X_6726996_SNP [dm3] X_6832963_SNP [dm6]	C	T	3.035e^-4	0.748	UPSTREAM CG12796 INTRON nonC	TF binding site mE1_TFBS_cad
2R	8902978	2R_8902978_SNP [dm3] 2R_13015473_SNP [dm6]	C	A	3.037e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16956092	2R_16956092_SNP [dm3] 2R_21068587_SNP [dm6]	T	C	3.039e^-4	0.748	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
X	19969076	X_19969076_SNP [dm3] X_20075043_SNP [dm6]	C	T	3.042e^-4	0.748	INTERGENIC
3R	26035275	3R_26035275_DEL [dm3] 3R_30209553_DEL [dm6]	AT	A	3.046e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	3.047e^-4	0.748	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	1029926	2L_1029926_SNP [dm3] 2L_1029926_SNP [dm6]	T	C	3.052e^-4	0.748	INTRON IA-2
2R	14118967	2R_14118967_SNP [dm3] 2R_18231462_SNP [dm6]	T	A	3.053e^-4	0.748	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6116832	X_6116832_SNP [dm3] X_6222799_SNP [dm6]	G	C	3.053e^-4	0.748	DOWNSTREAM sqh & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	16955429	2R_16955429_SNP [dm3] 2R_21067924_SNP [dm6]	A	C	3.056e^-4	0.748	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	12838941	3R_12838941_SNP [dm3] 3R_17013219_SNP [dm6]	T	A	3.064e^-4	0.748	DOWNSTREAM CG8907 INTERGENIC
X	6256813	X_6256813_SNP [dm3] X_6362780_SNP [dm6]	T	G	3.068e^-4	0.748	DOWNSTREAM swa EXON swaPsi
3R	24007696	3R_24007696_SNP [dm3] 3R_28181974_SNP [dm6]	C	G	3.079e^-4	0.748	INTRON CG34354
3R	9762802	3R_9762802_SNP [dm3] 3R_13937080_SNP [dm6]	G	C	3.089e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	10912445	2R_10912445_INS [dm3] 2R_15024940_INS [dm6]	C	CC	3.104e^-4	0.748	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl
3L	1554299	3L_1554299_SNP [dm3] 3L_1554299_SNP [dm6]	C	G	3.108e^-4	0.748	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
3L	13829293	3L_13829293_SNP [dm3] 3L_13836193_SNP [dm6]	G	A	3.111e^-4	0.748	INTERGENIC
X	18711963	X_18711963_INS [dm3] X_18817930_INS [dm6]	C	CC	3.111e^-4	0.748	INTRON CG42450
3R	9582698	3R_9582698_SNP [dm3] 3R_13756976_SNP [dm6]	C	T	3.118e^-4	0.748	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383 INTRON CG34383
X	453707	X_453707_SNP [dm3] X_559674_SNP [dm6]	C	A	3.126e^-4	0.748	INTRON Appl
3R	26035026	3R_26035026_SNP [dm3] 3R_30209304_SNP [dm6]	A	G	3.127e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3303768	X_3303768_SNP [dm3] X_3409735_SNP [dm6]	T	A	3.128e^-4	0.748	INTRON CR44999 & 1 other
X	16731635	X_16731635_SNP [dm3] X_16837602_SNP [dm6]	T	A	3.131e^-4	0.748	DOWNSTREAM RSG7 INTERGENIC
3R	20661315	3R_20661315_INS [dm3] 3R_24835593_INS [dm6]	A	ATACACA	3.133e^-4	0.748	UPSTREAM CR45216 & 1 other INTRON sosie	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4711712	X_4711712_SNP [dm3] X_4817679_SNP [dm6]	A	G	3.136e^-4	0.748	INTERGENIC
2L	6347058	2L_6347058_SNP [dm3] 2L_6347058_SNP [dm6]	A	G	3.137e^-4	0.748	SYNONYMOUS_CODING CG9497 DOWNSTREAM Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	21637277	3L_21637277_SNP [dm3] 3L_21644177_SNP [dm6]	A	G	3.141e^-4	0.748	UPSTREAM CG43980 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	4700971	3L_4700971_SNP [dm3] 3L_4700971_SNP [dm6]	C	A	3.142e^-4	0.748	INTRON RhoGEF64C
3L	904908	3L_904908_SNP [dm3] 3L_904908_SNP [dm6]	T	A	3.142e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11059673	3R_11059673_SNP [dm3] 3R_15233951_SNP [dm6]	C	A	3.143e^-4	0.748	SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16244391	2R_16244391_SNP [dm3] 2R_20356886_SNP [dm6]	C	T	3.146e^-4	0.748	INTERGENIC
3L	14558244	3L_14558244_SNP [dm3] 3L_14565144_SNP [dm6]	G	C	3.148e^-4	0.748	INTERGENIC
2L	21057413	2L_21057413_SNP [dm3] 2L_21057413_SNP [dm6]	C	A	3.153e^-4	0.748	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
3L	10420386	3L_10420386_SNP [dm3] 3L_10427286_SNP [dm6]	G	A	3.155e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	13945259	3L_13945259_SNP [dm3] 3L_13952159_SNP [dm6]	T	A	3.158e^-4	0.748	INTRON CG32137
3L	7535003	3L_7535003_SNP [dm3] 3L_7541903_SNP [dm6]	G	A	3.161e^-4	0.748	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9525972	2R_9525972_SNP [dm3] 2R_13638467_SNP [dm6]	C	A	3.162e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6805567	3L_6805567_SNP [dm3] 3L_6812467_SNP [dm6]	C	T	3.167e^-4	0.748	INTERGENIC
2L	1504582	2L_1504582_SNP [dm3] 2L_1504582_SNP [dm6]	A	G	3.169e^-4	0.748	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7277342	3L_7277342_INS [dm3] 3L_7284242_INS [dm6]	A	ACTTAATTAAGGGCAA...	3.174e^-4	0.748	INTRON unc-13-4A
3L	4601441	3L_4601441_SNP [dm3] 3L_4601441_SNP [dm6]	G	C	3.176e^-4	0.748	INTRON Src64B
2L	9840862	2L_9840862_DEL [dm3] 2L_9840862_DEL [dm6]	CC	C	3.182e^-4	0.748	INTRON nAChRalpha6
2R	10576572	2R_10576572_SNP [dm3] 2R_14689067_SNP [dm6]	A	G	3.184e^-4	0.748	INTRON mspo
3R	18814025	3R_18814025_SNP [dm3] 3R_22988303_SNP [dm6]	C	T	3.185e^-4	0.748	SYNONYMOUS_CODING Or94a UPSTREAM Or94b INTRON Nha2
2L	4852661	2L_4852661_INS [dm3] 2L_4852661_INS [dm6]	T	TTGCAATGT	3.187e^-4	0.748	UPSTREAM pog DOWNSTREAM Mon1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1679396	3L_1679396_SNP [dm3] 3L_1679396_SNP [dm6]	T	A	3.187e^-4	0.748	INTRON CG7991
2R	9964226	2R_9964226_SNP [dm3] 2R_14076721_SNP [dm6]	C	A	3.189e^-4	0.748	INTRON Prosap
2L	6402250	2L_6402250_SNP [dm3] 2L_6402250_SNP [dm6]	C	A	3.200e^-4	0.748	INTRON CG42368
2L	12340590	2L_12340590_SNP [dm3] 2L_12340590_SNP [dm6]	A	G	3.204e^-4	0.748	INTERGENIC
2R	15419278	2R_15419278_SNP [dm3] 2R_19531773_SNP [dm6]	T	C	3.205e^-4	0.748	INTRON sm
2L	9350385	2L_9350385_SNP [dm3] 2L_9350385_SNP [dm6]	C	G	3.207e^-4	0.748	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
3R	7528161	3R_7528161_DEL [dm3] 3R_11702439_DEL [dm6]	CC	C	3.216e^-4	0.748	UTR_3_PRIME CG14718	TF binding site BDTNP1_TFBS_da
X	5958819	X_5958819_SNP [dm3] X_6064786_SNP [dm6]	A	G	3.216e^-4	0.748	UTR_3_PRIME CG5921 DOWNSTREAM CG5921 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7509263	3L_7509263_SNP [dm3] 3L_7516163_SNP [dm6]	C	G	3.218e^-4	0.748	SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9525976	2R_9525976_DEL [dm3] 2R_13638471_DEL [dm6]	TGTACATA	GC	3.227e^-4	0.748	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12340581	2L_12340581_DEL [dm3] 2L_12340581_DEL [dm6]	AACC	A	3.230e^-4	0.748	INTERGENIC
3R	26034762	3R_26034762_SNP [dm3] 3R_30209040_SNP [dm6]	C	A	3.237e^-4	0.748	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9674368	2L_9674368_SNP [dm3] 2L_9674368_SNP [dm6]	A	G	3.238e^-4	0.748	INTERGENIC
3R	21038828	3R_21038828_SNP [dm3] 3R_25213106_SNP [dm6]	A	G	3.239e^-4	0.748	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9946042	2R_9946042_SNP [dm3] 2R_14058537_SNP [dm6]	G	C	3.240e^-4	0.748	UTR_3_PRIME mam INTRON mam
2R	8903006	2R_8903006_INS [dm3] 2R_13015501_INS [dm6]	A	AC	3.248e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6009985	3R_6009985_SNP [dm3] 3R_10184263_SNP [dm6]	G	T	3.249e^-4	0.748	INTRON CG12814
3R	10496945	3R_10496945_SNP [dm3] 3R_14671223_SNP [dm6]	T	A	3.256e^-4	0.748	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8018293	3L_8018293_INS [dm3] 3L_8025193_INS [dm6]	T	TCTGTT	3.256e^-4	0.748	INTRON nmo
X	21264552	X_21264552_SNP [dm3] X_21393525_SNP [dm6]	G	T	3.261e^-4	0.748	INTERGENIC
3L	12722235	3L_12722235_SNP [dm3] 3L_12729135_SNP [dm6]	A	C	3.261e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8021038	3L_8021038_SNP [dm3] 3L_8027938_SNP [dm6]	A	G	3.266e^-4	0.748	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18614245	3R_18614245_SNP [dm3] 3R_22788523_SNP [dm6]	T	C	3.266e^-4	0.748	SPLICE_SITE_REGION CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10956549	2R_10956549_SNP [dm3] 2R_15069044_SNP [dm6]	G	A	3.266e^-4	0.748	INTERGENIC
2R	10163225	2R_10163225_SNP [dm3] 2R_14275720_SNP [dm6]	G	C	3.270e^-4	0.748	UPSTREAM Ih DOWNSTREAM conv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	45633	2R_45633_SNP [dm3] 2R_4158128_SNP [dm6]	G	A	3.282e^-4	0.748	INTERGENIC
3R	17481292	3R_17481292_SNP [dm3] 3R_21655570_SNP [dm6]	A	T	3.287e^-4	0.748	INTRON E2f	TF binding site BDTNP1_TFBS_da
3R	22466284	3R_22466284_SNP [dm3] 3R_26640562_SNP [dm6]	C	T	3.288e^-4	0.748	SYNONYMOUS_CODING TwdlD
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	3.290e^-4	0.748	UPSTREAM CG12003 INTRON CG7879
2L	16107548	2L_16107548_SNP [dm3] 2L_16107548_SNP [dm6]	C	G	3.301e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10514499	3L_10514499_SNP [dm3] 3L_10521399_SNP [dm6]	A	G	3.305e^-4	0.748	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7535925	3L_7535925_SNP [dm3] 3L_7542825_SNP [dm6]	G	A	3.312e^-4	0.748	UPSTREAM CG32376 INTERGENIC
3R	22100254	3R_22100254_SNP [dm3] 3R_26274532_SNP [dm6]	G	C	3.312e^-4	0.748	INTRON CG6154
3R	13691927	3R_13691927_INS [dm3] 3R_17866205_INS [dm6]	A	AG	3.317e^-4	0.748	INTRON tinc
2L	5455471	2L_5455471_SNP [dm3] 2L_5455471_SNP [dm6]	C	T	3.319e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10197200	2R_10197200_SNP [dm3] 2R_14309695_SNP [dm6]	T	A	3.323e^-4	0.748	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	4630779	3L_4630779_SNP [dm3] 3L_4630779_SNP [dm6]	A	G	3.323e^-4	0.748	INTRON axo
3L	4630802	3L_4630802_SNP [dm3] 3L_4630802_SNP [dm6]	G	A	3.323e^-4	0.748	INTRON axo
X	20571251	X_20571251_SNP [dm3] X_20700224_SNP [dm6]	C	A	3.323e^-4	0.748	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	12216061	3L_12216061_SNP [dm3] 3L_12222961_SNP [dm6]	T	A	3.327e^-4	0.748	INTRON app
2R	4077229	2R_4077229_SNP [dm3] 2R_8189724_SNP [dm6]	T	C	3.329e^-4	0.748	INTRON LRP1
3L	5275259	3L_5275259_SNP [dm3] 3L_5282159_SNP [dm6]	T	C	3.329e^-4	0.748	INTERGENIC
3L	8074400	3L_8074400_SNP [dm3] 3L_8081300_SNP [dm6]	A	T	3.338e^-4	0.749	DOWNSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_Trl
3L	10783097	3L_10783097_INS [dm3] 3L_10789997_INS [dm6]	T	TAGTTTATTAT...	3.342e^-4	0.749	DOWNSTREAM CR44545 INTERGENIC
2L	17120853	2L_17120853_SNP [dm3] 2L_17120853_SNP [dm6]	G	A	3.355e^-4	0.749	INTERGENIC
3R	24026514	3R_24026514_DEL [dm3] 3R_28200792_DEL [dm6]	ATGA	A	3.356e^-4	0.749	INTRON CG34354
3L	22103943	3L_22103943_SNP [dm3] 3L_22110843_SNP [dm6]	T	G	3.356e^-4	0.749	INTERGENIC
3L	16683063	3L_16683063_SNP [dm3] 3L_16689963_SNP [dm6]	T	A	3.369e^-4	0.75	DOWNSTREAM CR45179 INTRON Lasp & 2 others
3R	21063013	3R_21063013_SNP [dm3] 3R_25237291_SNP [dm6]	C	T	3.371e^-4	0.75	UPSTREAM CG11852 INTERGENIC
3R	4334704	3R_4334704_SNP [dm3] 3R_8508982_SNP [dm6]	G	A	3.375e^-4	0.75	INTERGENIC
2L	13211768	2L_13211768_SNP [dm3] 2L_13211768_SNP [dm6]	A	G	3.381e^-4	0.75	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7528326	3R_7528326_INS [dm3] 3R_11702604_INS [dm6]	T	TTGCTCAGT	3.387e^-4	0.75	UTR_3_PRIME CG14718	TF binding site BDTNP1_TFBS_da
3L	8025393	3L_8025393_SNP [dm3] 3L_8032293_SNP [dm6]	A	T	3.390e^-4	0.75	INTRON nmo
3L	3689585	3L_3689585_SNP [dm3] 3L_3689585_SNP [dm6]	G	A	3.391e^-4	0.75	DOWNSTREAM CR43484 INTERGENIC
X	19969162	X_19969162_SNP [dm3] X_20075129_SNP [dm6]	C	T	3.396e^-4	0.75	INTERGENIC
3L	1003041	3L_1003041_SNP [dm3] 3L_1003041_SNP [dm6]	C	G	3.397e^-4	0.75	INTRON trio
2R	13130832	2R_13130832_SNP [dm3] 2R_17243327_SNP [dm6]	G	T	3.399e^-4	0.75	INTRON mbl
2L	1598483	2L_1598483_SNP [dm3] 2L_1598483_SNP [dm6]	T	G	3.404e^-4	0.75	INTRON haf & 1 other
2L	22427297	2L_22427297_SNP [dm3] 2L_22534565_SNP [dm6]	C	T	3.426e^-4	0.754	UTR_3_PRIME RpL5 DOWNSTREAM RpL5 & 1 other	TF binding site mE1_TFBS_HSA
2L	5491758	2L_5491758_SNP [dm3] 2L_5491758_SNP [dm6]	A	G	3.429e^-4	0.754	INTERGENIC
3R	25152290	3R_25152290_SNP [dm3] 3R_29326568_SNP [dm6]	T	C	3.436e^-4	0.754	INTERGENIC
X	17906858	X_17906858_SNP [dm3] X_18012825_SNP [dm6]	T	C	3.440e^-4	0.754	INTRON Sh
2L	14196899	2L_14196899_SNP [dm3] 2L_14196899_SNP [dm6]	A	T	3.454e^-4	0.754	INTRON Dyrk2
2R	13743805	2R_13743805_SNP [dm3] 2R_17856300_SNP [dm6]	C	A	3.454e^-4	0.754	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
3L	13972313	3L_13972313_SNP [dm3] 3L_13979213_SNP [dm6]	G	A	3.460e^-4	0.754	INTRON CG17364
3L	7534517	3L_7534517_SNP [dm3] 3L_7541417_SNP [dm6]	G	A	3.462e^-4	0.754	UPSTREAM CG32374 DOWNSTREAM CG32376 INTERGENIC
2R	16955395	2R_16955395_SNP [dm3] 2R_21067890_SNP [dm6]	A	G	3.462e^-4	0.754	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	14324929	3L_14324929_SNP [dm3] 3L_14331829_SNP [dm6]	G	T	3.466e^-4	0.754	INTRON fz
2R	29084	2R_29084_SNP [dm3] 2R_4141579_SNP [dm6]	G	C	3.466e^-4	0.754	INTERGENIC
X	15132236	X_15132236_SNP [dm3] X_15238203_SNP [dm6]	C	T	3.469e^-4	0.754	INTERGENIC
4	995018	4_995018_SNP [dm3] 4_974392_SNP [dm6]	A	G	3.480e^-4	0.755	UPSTREAM sphinx INTRON fuss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4264097	3R_4264097_SNP [dm3] 3R_8438375_SNP [dm6]	A	C	3.502e^-4	0.755	INTRON CG45263
3R	23540032	3R_23540032_SNP [dm3] 3R_27714310_SNP [dm6]	C	A	3.503e^-4	0.755	INTERGENIC
2L	564707	2L_564707_SNP [dm3] 2L_564707_SNP [dm6]	T	A	3.504e^-4	0.755	NON_SYNONYMOUS_CODING CG2794 UPSTREAM CG11835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10537752	2R_10537752_SNP [dm3] 2R_14650247_SNP [dm6]	T	C	3.516e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14312517	2L_14312517_SNP [dm3] 2L_14312517_SNP [dm6]	G	C	3.522e^-4	0.755	INTRON wb
3L	8021571	3L_8021571_SNP [dm3] 3L_8028471_SNP [dm6]	A	G	3.526e^-4	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
3L	8021572	3L_8021572_SNP [dm3] 3L_8028472_SNP [dm6]	C	T	3.526e^-4	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2R	14288798	2R_14288798_SNP [dm3] 2R_18401293_SNP [dm6]	T	C	3.526e^-4	0.755	SYNONYMOUS_CODING GstE3 UPSTREAM CR43687 DOWNSTREAM GstE2	TF binding site mE1_TFBS_Trl
3R	23537421	3R_23537421_SNP [dm3] 3R_27711699_SNP [dm6]	A	G	3.533e^-4	0.755	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9905556	3R_9905556_SNP [dm3] 3R_14079834_SNP [dm6]	A	T	3.552e^-4	0.755	INTRON foxo	TF binding site mE1_TFBS_cad
2L	4690947	2L_4690947_SNP [dm3] 2L_4690947_SNP [dm6]	T	A	3.556e^-4	0.755	UPSTREAM CG3251 INTERGENIC
3R	17288202	3R_17288202_SNP [dm3] 3R_21462480_SNP [dm6]	C	A	3.566e^-4	0.755	INTERGENIC
3L	12641484	3L_12641484_SNP [dm3] 3L_12648384_SNP [dm6]	T	G	3.572e^-4	0.755	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11655692	2L_11655692_SNP [dm3] 2L_11655692_SNP [dm6]	A	C	3.574e^-4	0.755	INTERGENIC
3R	22430204	3R_22430204_SNP [dm3] 3R_26604482_SNP [dm6]	A	G	3.575e^-4	0.755	DOWNSTREAM scrib INTERGENIC
3R	26039231	3R_26039231_SNP [dm3] 3R_30213509_SNP [dm6]	C	T	3.576e^-4	0.755	SYNONYMOUS_CODING CecB DOWNSTREAM CecA2 & 1 other
2R	10540700	2R_10540700_INS [dm3] 2R_14653195_INS [dm6]	T	TTAATAT	3.577e^-4	0.755	INTERGENIC
2R	10540772	2R_10540772_SNP [dm3] 2R_14653267_SNP [dm6]	C	A	3.577e^-4	0.755	INTERGENIC
X	9322451	X_9322451_SNP [dm3] X_9428418_SNP [dm6]	T	C	3.584e^-4	0.755	INTRON mgl
3L	11478720	3L_11478720_SNP [dm3] 3L_11485620_SNP [dm6]	C	G	3.587e^-4	0.755	INTERGENIC
X	13401808	X_13401808_SNP [dm3] X_13507775_SNP [dm6]	G	A	3.590e^-4	0.755	INTRON Neto
3L	6805417	3L_6805417_SNP [dm3] 3L_6812317_SNP [dm6]	C	T	3.593e^-4	0.755	INTERGENIC
2R	9061616	2R_9061616_SNP [dm3] 2R_13174111_SNP [dm6]	G	A	3.603e^-4	0.755	SYNONYMOUS_CODING AGBE	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4202829	X_4202829_SNP [dm3] X_4308796_SNP [dm6]	A	G	3.605e^-4	0.755	INTERGENIC
2L	10990455	2L_10990455_SNP [dm3] 2L_10990455_SNP [dm6]	T	C	3.612e^-4	0.755	NON_SYNONYMOUS_CODING CG16833 INTRON CG16833	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21503055	3R_21503055_SNP [dm3] 3R_25677333_SNP [dm6]	G	T	3.614e^-4	0.755	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
2L	6134633	2L_6134633_SNP [dm3] 2L_6134633_SNP [dm6]	G	A	3.614e^-4	0.755	UPSTREAM CR45719 INTERGENIC
X	17906859	X_17906859_SNP [dm3] X_18012826_SNP [dm6]	G	C	3.616e^-4	0.755	INTRON Sh
3R	17910797	3R_17910797_SNP [dm3] 3R_22085075_SNP [dm6]	T	C	3.616e^-4	0.755	DOWNSTREAM CG5778 INTERGENIC
2L	2096819	2L_2096819_SNP [dm3] 2L_2096819_SNP [dm6]	A	T	3.616e^-4	0.755	INTRON dpr3
3R	23493033	3R_23493033_SNP [dm3] 3R_27667311_SNP [dm6]	C	A	3.618e^-4	0.755	INTRON unc80
3R	26210793	3R_26210793_SNP [dm3] 3R_30385071_SNP [dm6]	A	G	3.620e^-4	0.755	DOWNSTREAM Fer1HCH INTERGENIC	TF binding site mE1_TFBS_Kr
4	530463	4_530463_DEL [dm3] 4_509837_DEL [dm6]	AC	A	3.621e^-4	0.755	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8138734	3L_8138734_SNP [dm3] 3L_8145634_SNP [dm6]	G	C	3.621e^-4	0.755	INTRON CG13676
2R	960291	2R_960291_SNP [dm3] 2R_5072786_SNP [dm6]	C	G	3.626e^-4	0.755	INTERGENIC
2L	11769720	2L_11769720_SNP [dm3] 2L_11769720_SNP [dm6]	T	C	3.629e^-4	0.755	INTERGENIC
2L	15595438	2L_15595438_SNP [dm3] 2L_15595438_SNP [dm6]	G	A	3.638e^-4	0.755	INTERGENIC
2R	892935	2R_892935_SNP [dm3] 2R_5005430_SNP [dm6]	C	T	3.643e^-4	0.755	INTRON Ir41a	transposable element FlyBase
X	6112719	X_6112719_SNP [dm3] X_6218686_SNP [dm6]	C	T	3.644e^-4	0.755	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12340601	2L_12340601_SNP [dm3] 2L_12340601_SNP [dm6]	A	C	3.649e^-4	0.755	INTERGENIC
2R	11124488	2R_11124488_SNP [dm3] 2R_15236983_SNP [dm6]	T	C	3.653e^-4	0.755	INTRON Fs	TF binding site BDTNP1_TFBS_da
2R	7111836	2R_7111836_SNP [dm3] 2R_11224331_SNP [dm6]	T	A	3.653e^-4	0.755	INTRON CG7737
X	19069734	X_19069734_DEL [dm3] X_19175701_DEL [dm6]	AT	A	3.657e^-4	0.755	UPSTREAM pncr004:X DOWNSTREAM CG7556 INTERGENIC
2L	6255296	2L_6255296_SNP [dm3] 2L_6255296_SNP [dm6]	G	C	3.658e^-4	0.755	UPSTREAM CG9486 INTRON Ddr
4	1048713	4_1048713_SNP [dm3] 4_1028087_SNP [dm6]	C	T	3.661e^-4	0.755	UPSTREAM PlexA & 1 other DOWNSTREAM CG11077 INTRON CR44031	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12808637	3R_12808637_SNP [dm3] 3R_16982915_SNP [dm6]	A	T	3.665e^-4	0.755	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12009544	3R_12009544_SNP [dm3] 3R_16183822_SNP [dm6]	C	A	3.678e^-4	0.756	INTRON CG8927
3L	11117578	3L_11117578_SNP [dm3] 3L_11124478_SNP [dm6]	T	G	3.680e^-4	0.756	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	14629666	2R_14629666_SNP [dm3] 2R_18742161_SNP [dm6]	C	A	3.684e^-4	0.756	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
3R	26034759	3R_26034759_SNP [dm3] 3R_30209037_SNP [dm6]	G	C	3.685e^-4	0.756	UPSTREAM snoRNA:Psi28S-2626 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21111023	3R_21111023_SNP [dm3] 3R_25285301_SNP [dm6]	G	A	3.712e^-4	0.757	UPSTREAM CG31104 DOWNSTREAM CG31300 INTERGENIC
3R	25793695	3R_25793695_SNP [dm3] 3R_29967973_SNP [dm6]	T	C	3.714e^-4	0.757	INTRON TkR99D
2L	9141209	2L_9141209_SNP [dm3] 2L_9141209_SNP [dm6]	A	T	3.724e^-4	0.757	INTRON CG32982
2L	8179867	2L_8179867_SNP [dm3] 2L_8179867_SNP [dm6]	C	T	3.734e^-4	0.757	SPLICE_SITE_REGION Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
X	4719848	X_4719848_SNP [dm3] X_4825815_SNP [dm6]	T	C	3.736e^-4	0.757	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
4	915832	4_915832_SNP [dm3] 4_895206_SNP [dm6]	T	A	3.737e^-4	0.757	INTRON unc-13	transposable element FlyBase
X	3200579	X_3200579_SNP [dm3] X_3306546_SNP [dm6]	A	G	3.737e^-4	0.757	INTRON dnc	TF binding site BDTNP1_TFBS_dl
3R	4331076	3R_4331076_DEL [dm3] 3R_8505354_DEL [dm6]	TT	T	3.739e^-4	0.757	INTERGENIC
3R	16498028	3R_16498028_SNP [dm3] 3R_20672306_SNP [dm6]	C	T	3.740e^-4	0.757	UTR_3_PRIME Cpr92F
3L	1734757	3L_1734757_SNP [dm3] 3L_1734757_SNP [dm6]	C	T	3.741e^-4	0.757	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21204151	3L_21204151_SNP [dm3] 3L_21211051_SNP [dm6]	G	C	3.744e^-4	0.757	UPSTREAM CG10510 INTRON CG10508
3R	14670003	3R_14670003_SNP [dm3] 3R_18844281_SNP [dm6]	C	T	3.747e^-4	0.757	INTRON CG18208
2L	7999047	2L_7999047_SNP [dm3] 2L_7999047_SNP [dm6]	A	G	3.748e^-4	0.757	UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	16682993	3L_16682993_SNP [dm3] 3L_16689893_SNP [dm6]	G	A	3.750e^-4	0.757	INTRON Lasp & 2 others EXON CR45179
2L	14419442	2L_14419442_SNP [dm3] 2L_14419442_SNP [dm6]	T	G	3.755e^-4	0.757	INTERGENIC
2R	21373	2R_21373_SNP [dm3] 2R_4133868_SNP [dm6]	T	G	3.758e^-4	0.757	DOWNSTREAM CG17683 INTERGENIC
3R	16678819	3R_16678819_DEL [dm3] 3R_20853097_DEL [dm6]	GT	A	3.759e^-4	0.757	DOWNSTREAM mir-1011 INTRON Ir93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9502296	3R_9502296_SNP [dm3] 3R_13676574_SNP [dm6]	A	C	3.764e^-4	0.757	UTR_5_PRIME CG9588 & 1 other UPSTREAM lkb1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	764642	X_764642_SNP [dm3] X_870609_SNP [dm6]	C	T	3.769e^-4	0.757	INTRON CG43867
2R	10197642	2R_10197642_SNP [dm3] 2R_14310137_SNP [dm6]	C	G	3.783e^-4	0.759	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	10313513	X_10313513_SNP [dm3] X_10419480_SNP [dm6]	A	G	3.803e^-4	0.759	INTRON CG32683
2L	21734605	2L_21734605_SNP [dm3] 2L_21734605_SNP [dm6]	A	T	3.807e^-4	0.759	INTERGENIC	transposable element FlyBase
2R	10443211	2R_10443211_SNP [dm3] 2R_14555706_SNP [dm6]	G	A	3.817e^-4	0.759	INTRON ttv
X	12866305	X_12866305_SNP [dm3] X_12972272_SNP [dm6]	A	C	3.819e^-4	0.759	SYNONYMOUS_CODING CG15721 INTRON CR43636
X	16152343	X_16152343_INS [dm3] X_16258310_INS [dm6]	T	TT	3.829e^-4	0.759	INTERGENIC
3R	14793483	3R_14793483_SNP [dm3] 3R_18967761_SNP [dm6]	G	A	3.831e^-4	0.759	INTRON CG42613 & 1 other
2R	7004543	2R_7004543_SNP [dm3] 2R_11117038_SNP [dm6]	A	G	3.833e^-4	0.759	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16789567	3L_16789567_SNP [dm3] 3L_16796467_SNP [dm6]	T	G	3.839e^-4	0.759	INTRON CG9674	TF binding site mE1_TFBS_cad
2R	5666937	2R_5666937_SNP [dm3] 2R_9779432_SNP [dm6]	T	C	3.840e^-4	0.759	NON_SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5011846	X_5011846_SNP [dm3] X_5117813_SNP [dm6]	T	A	3.845e^-4	0.759	INTRON rg & 1 other
X	10429383	X_10429383_SNP [dm3] X_10535350_SNP [dm6]	G	A	3.848e^-4	0.759	INTRON spri
3L	13441950	3L_13441950_SNP [dm3] 3L_13448850_SNP [dm6]	G	A	3.860e^-4	0.759	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3R	21338541	3R_21338541_SNP [dm3] 3R_25512819_SNP [dm6]	C	T	3.863e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17533985	3L_17533985_DEL [dm3] 3L_17540885_DEL [dm6]	TGC	A	3.867e^-4	0.759	INTRON Nedd4
X	4538333	X_4538333_SNP [dm3] X_4644300_SNP [dm6]	A	T	3.884e^-4	0.759	UPSTREAM CG3081 DOWNSTREAM HLH4C INTRON CG3062
3R	21031696	3R_21031696_SNP [dm3] 3R_25205974_SNP [dm6]	A	T	3.884e^-4	0.759	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3L	8031360	3L_8031360_SNP [dm3] 3L_8038260_SNP [dm6]	A	G	3.886e^-4	0.759	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	453070	X_453070_SNP [dm3] X_559037_SNP [dm6]	C	T	3.887e^-4	0.759	INTRON Appl
X	8871606	X_8871606_SNP [dm3] X_8977573_SNP [dm6]	C	T	3.892e^-4	0.759	INTRON rdgA & 1 other EXON CR43836
3R	26914961	3R_26914961_SNP [dm3] 3R_31089239_SNP [dm6]	G	C	3.894e^-4	0.759	INTERGENIC
2R	20435900	2R_20435900_SNP [dm3] 2R_24548377_SNP [dm6]	C	G	3.894e^-4	0.759	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11124527	2R_11124527_SNP [dm3] 2R_15237022_SNP [dm6]	C	G	3.894e^-4	0.759	INTRON Fs	TF binding site BDTNP1_TFBS_da
3L	6960473	3L_6960473_SNP [dm3] 3L_6967373_SNP [dm6]	A	G	3.895e^-4	0.759	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6945311	2L_6945311_INS [dm3] 2L_6945311_INS [dm6]	C	CA	3.899e^-4	0.759	UPSTREAM CG10158 DOWNSTREAM ihog INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	13183396	2R_13183396_SNP [dm3] 2R_17295891_SNP [dm6]	T	A	3.903e^-4	0.759	INTRON mbl
2R	13280738	2R_13280738_SNP [dm3] 2R_17393233_SNP [dm6]	C	A	3.907e^-4	0.759	DOWNSTREAM tRNA:CR30233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2096650	2L_2096650_SNP [dm3] 2L_2096650_SNP [dm6]	C	T	3.911e^-4	0.759	INTRON dpr3
3R	27002887	3R_27002887_SNP [dm3] 3R_31177165_SNP [dm6]	G	A	3.911e^-4	0.759	INTRON Gycbeta100B
3R	21876422	3R_21876422_SNP [dm3] 3R_26050700_SNP [dm6]	G	A	3.922e^-4	0.759	NON_SYNONYMOUS_CODING Exo84 SPLICE_SITE_REGION Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12340614	2L_12340614_SNP [dm3] 2L_12340614_SNP [dm6]	A	G	3.926e^-4	0.759	INTERGENIC
3L	13607424	3L_13607424_SNP [dm3] 3L_13614324_SNP [dm6]	A	C	3.936e^-4	0.759	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	16739484	2L_16739484_SNP [dm3] 2L_16739484_SNP [dm6]	C	T	3.937e^-4	0.759	INTRON ChLD3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7535561	3L_7535561_SNP [dm3] 3L_7542461_SNP [dm6]	A	C	3.945e^-4	0.759	UPSTREAM CG32376 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16666693	2R_16666693_SNP [dm3] 2R_20779188_SNP [dm6]	A	G	3.949e^-4	0.759	SYNONYMOUS_CODING CG43711
3L	3384308	3L_3384308_SNP [dm3] 3L_3384308_SNP [dm6]	G	A	3.950e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10197196	2R_10197196_INS [dm3] 2R_14309691_INS [dm6]	G	GG	3.957e^-4	0.759	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	12866290	X_12866290_SNP [dm3] X_12972257_SNP [dm6]	A	T	3.958e^-4	0.759	SYNONYMOUS_CODING CG15721 INTRON CR43636
X	3820418	X_3820418_SNP [dm3] X_3926385_SNP [dm6]	T	C	3.958e^-4	0.759	INTRON CG42541
X	3807721	X_3807721_SNP [dm3] X_3913688_SNP [dm6]	A	C	3.959e^-4	0.759	INTRON CG42541
2L	4961702	2L_4961702_SNP [dm3] 2L_4961702_SNP [dm6]	A	T	3.964e^-4	0.759	INTRON CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19615738	3R_19615738_SNP [dm3] 3R_23790016_SNP [dm6]	T	C	3.965e^-4	0.759	SYNONYMOUS_CODING mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13987859	2L_13987859_SNP [dm3] 2L_13987859_SNP [dm6]	C	T	3.976e^-4	0.759	SYNONYMOUS_CODING rk
3R	18991432	3R_18991432_SNP [dm3] 3R_23165710_SNP [dm6]	C	A	3.977e^-4	0.759	INTERGENIC
3R	22369364	3R_22369364_SNP [dm3] 3R_26543642_SNP [dm6]	T	A	3.978e^-4	0.759	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	10999016	3R_10999016_SNP [dm3] 3R_15173294_SNP [dm6]	G	T	3.982e^-4	0.759	DOWNSTREAM Mf INTRON Mf & 1 other
2R	14016811	2R_14016811_SNP [dm3] 2R_18129306_SNP [dm6]	G	A	3.984e^-4	0.759	SYNONYMOUS_CODING Dip3 DOWNSTREAM Hsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12837460	3R_12837460_SNP [dm3] 3R_17011738_SNP [dm6]	C	T	3.989e^-4	0.759	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
3L	8019464	3L_8019464_SNP [dm3] 3L_8026364_SNP [dm6]	T	C	3.991e^-4	0.759	INTRON nmo
3R	22100246	3R_22100246_SNP [dm3] 3R_26274524_SNP [dm6]	G	A	3.992e^-4	0.759	INTRON CG6154
3R	1076449	3R_1076449_SNP [dm3] 3R_5250727_SNP [dm6]	G	A	3.993e^-4	0.759	UPSTREAM CR44019 INTRON CG12163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7367102	3L_7367102_SNP [dm3] 3L_7374002_SNP [dm6]	C	G	4.008e^-4	0.759	DOWNSTREAM SMSr & 1 other INTERGENIC
3L	7367103	3L_7367103_SNP [dm3] 3L_7374003_SNP [dm6]	T	A	4.008e^-4	0.759	DOWNSTREAM SMSr & 1 other INTERGENIC
2R	11970449	2R_11970449_SNP [dm3] 2R_16082944_SNP [dm6]	T	G	4.009e^-4	0.759	UTR_3_PRIME Dg
2R	14410761	2R_14410761_SNP [dm3] 2R_18523256_SNP [dm6]	C	A	4.010e^-4	0.759	UTR_3_PRIME CG43066 INTRON CG43066
3R	18319795	3R_18319795_SNP [dm3] 3R_22494073_SNP [dm6]	C	G	4.012e^-4	0.759	DOWNSTREAM CG7046 INTERGENIC
X	8727870	X_8727870_MNP [dm3] X_8833837_MNP [dm6]	ACAAA	TTTTT	4.012e^-4	0.759	INTERGENIC
X	8727876	X_8727876_SNP [dm3] X_8833843_SNP [dm6]	A	T	4.012e^-4	0.759	INTERGENIC
3R	21060370	3R_21060370_SNP [dm3] 3R_25234648_SNP [dm6]	T	C	4.016e^-4	0.759	SYNONYMOUS_CODING CG10420	TF binding site mE1_TFBS_sens
3R	6921927	3R_6921927_SNP [dm3] 3R_11096205_SNP [dm6]	G	A	4.023e^-4	0.76	INTERGENIC
3L	22697835	3L_22697835_SNP [dm3] 3L_22704735_SNP [dm6]	G	T	4.027e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10445556	3L_10445556_SNP [dm3] 3L_10452456_SNP [dm6]	C	T	4.033e^-4	0.76	INTERGENIC
3L	1563665	3L_1563665_DEL [dm3] 3L_1563665_DEL [dm6]	AGATATGCATTCTGGA...	A	4.034e^-4	0.76	INTRON CG7879
3L	13441927	3L_13441927_SNP [dm3] 3L_13448827_SNP [dm6]	G	A	4.051e^-4	0.762	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
2R	15747949	2R_15747949_SNP [dm3] 2R_19860444_SNP [dm6]	G	A	4.055e^-4	0.762	UPSTREAM CR44570 INTRON CR44571
X	21081267	X_21081267_SNP [dm3] X_21210240_SNP [dm6]	T	C	4.060e^-4	0.762	INTRON CG32521
2L	21745904	2L_21745904_SNP [dm3] 2L_21745904_SNP [dm6]	A	G	4.076e^-4	0.762	INTRON step	transposable element FlyBase

By genomic position
Variant impact
Gene name

2μg/mL survivorship phenotype phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results