DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Covariates

We tested for association of this phenotypes with known covariates Huang et al., 2014.

A preliminary ANOVA association analysis was carried out to check if any of the covariates was associated with the phenotype, prior correction.

Phenotype	P-value	Significance
In_2R_NS	0.001511

Full covariate identification results

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

GWAS results 20335 significant hits at p-value < 0.01. The 1000 top results are displayed in this table.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8072884	2R_8072884_INS	GAGTTACGGGTGCCTCCGTT...	G	1.966e^-26	3.718e^-20	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
2R	8049979	2R_8049979_SNP	C	A	2.004e^-23	1.025e^-17	NON_SYNONYMOUS_CODING Prp8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	8050589	2R_8050589_SNP	T	A	2.004e^-23	1.025e^-17	UPSTREAM CG13177 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2R	8072916	2R_8072916_SNP	A	T	2.168e^-23	1.025e^-17	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
2R	8052802	2R_8052802_SNP	T	A	2.921e^-23	1.105e^-17	NON_SYNONYMOUS_CODING CG34232 DOWNSTREAM CG13177 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8051603	2R_8051603_SNP	A	G	1.263e^-22	3.981e^-17	NON_SYNONYMOUS_CODING CG13177 DOWNSTREAM CG34232	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
2R	8070658	2R_8070658_SNP	G	T	7.003e^-17	1.892e^-11	NON_SYNONYMOUS_CODING CG13175 UTR_5_PRIME CG33964 DOWNSTREAM wash & 1 other	TF binding site mE1_TFBS_sens
2R	8031335	2R_8031335_SNP	T	C	8.306e^-16	1.963e^-10	SYNONYMOUS_CODING CG13178 DOWNSTREAM CG8378	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8068113	2R_8068113_SNP	G	T	1.048e^-14	2.103e^-9	UPSTREAM wash & 1 other DOWNSTREAM CR45264 INTRON wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8060142	2R_8060142_SNP	A	G	1.112e^-14	2.103e^-9	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8060123	2R_8060123_SNP	G	A	1.281e^-14	2.202e^-9	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8061931	2R_8061931_SNP	C	A	1.218e^-13	1.919e^-8	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8038377	2R_8038377_SNP	G	T	2.468e^-13	3.590e^-8	UPSTREAM CG8878 INTRON Hen1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8038268	2R_8038268_SNP	T	A	8.811e^-13	1.190e^-7	UPSTREAM CG8878 INTRON Hen1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8068499	2R_8068499_SNP	A	G	1.024e^-12	1.291e^-7	SYNONYMOUS_CODING wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8059576	2R_8059576_SNP	C	T	1.627e^-12	1.923e^-7	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	8060092	2R_8060092_SNP	A	G	3.523e^-12	3.918e^-7	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8061873	2R_8061873_SNP	T	G	6.611e^-12	6.944e^-7	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8062180	2R_8062180_SNP	T	C	1.701e^-11	1.693e^-6	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8089676	2R_8089676_SNP	A	T	2.363e^-11	2.234e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8067090	2R_8067090_SNP	C	T	3.566e^-11	3.210e^-6	UTR_3_PRIME CG8860 UPSTREAM wash EXON CR45264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8021436	2R_8021436_SNP	T	G	3.765e^-11	3.236e^-6	INTERGENIC
2R	8060810	2R_8060810_SNP	A	G	8.462e^-11	6.957e^-6	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8024102	2R_8024102_SNP	G	C	9.912e^-11	7.809e^-6	INTERGENIC
2R	8062000	2R_8062000_SNP	T	C	1.813e^-10	1.327e^-5	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8063730	2R_8063730_SNP	T	C	1.825e^-10	1.327e^-5	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8026331	2R_8026331_SNP	C	T	3.037e^-10	2.127e^-5	UTR_5_PRIME CG18343 DOWNSTREAM skpB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	8063706	2R_8063706_SNP	C	G	4.197e^-10	2.834e^-5	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8067842	2R_8067842_SNP	A	G	8.651e^-10	5.640e^-5	UPSTREAM wash & 1 other DOWNSTREAM CR45264 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8059905	2R_8059905_SNP	G	A	1.123e^-9	6.991e^-5	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	8060899	2R_8060899_SNP	A	G	1.217e^-9	6.991e^-5	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8060917	2R_8060917_SNP	C	G	1.217e^-9	6.991e^-5	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8031124	2R_8031124_SNP	A	T	1.220e^-9	6.991e^-5	NON_SYNONYMOUS_CODING CG13178 DOWNSTREAM CG8378	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8059934	2R_8059934_SNP	G	A	1.338e^-9	7.438e^-5	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	8059620	2R_8059620_DEL	T	TTCAGTCTAAACAAATA...	1.459e^-9	7.882e^-5	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	8024331	2R_8024331_SNP	T	A	1.646e^-9	8.646e^-5	INTERGENIC
2R	8019960	2R_8019960_SNP	A	G	1.790e^-9	9.147e^-5	INTERGENIC
2R	8069132	2R_8069132_SNP	T	C	2.076e^-9	1.033e^-4	SYNONYMOUS_CODING wash	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8019459	2R_8019459_SNP	C	G	2.176e^-9	1.055e^-4	INTERGENIC
2R	8059616	2R_8059616_SNP	C	A	2.655e^-9	1.255e^-4	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	8020767	2R_8020767_SNP	T	C	3.105e^-9	1.432e^-4	INTERGENIC
2R	8021638	2R_8021638_SNP	A	G	3.704e^-9	1.667e^-4	INTERGENIC
2R	8062950	2R_8062950_SNP	A	T	4.786e^-9	2.105e^-4	INTRON Cct5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25518499	3R_25518499_SNP	C	T	5.750e^-9	2.471e^-4	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8059618	2R_8059618_SNP	T	G	1.111e^-8	4.641e^-4	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	8063030	2R_8063030_SNP	A	T	1.159e^-8	4.641e^-4	INTRON Cct5	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8020678	2R_8020678_SNP	T	A	1.167e^-8	4.641e^-4	INTERGENIC
3R	25518937	3R_25518937_SNP	T	G	1.178e^-8	4.641e^-4	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8059614	2R_8059614_SNP	T	A	1.260e^-8	4.864e^-4	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	25519039	3R_25519039_DEL	AAAAC	A	1.458e^-8	5.513e^-4	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20978297	3R_20978297_SNP	C	T	1.507e^-8	5.588e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8062781	2R_8062781_SNP	A	G	1.769e^-8	6.431e^-4	INTRON Cct5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25519022	3R_25519022_SNP	T	A	2.934e^-8	0.001	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8100376	2R_8100376_SNP	C	T	3.329e^-8	0.001	UPSTREAM Sr-CII INTERGENIC
2L	15110192	2L_15110192_SNP	A	G	3.451e^-8	0.001	NON_SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8115847	2R_8115847_SNP	A	C	3.747e^-8	0.001	INTRON CG8854
2R	8100369	2R_8100369_SNP	T	C	4.640e^-8	0.002	UPSTREAM Sr-CII INTERGENIC
3R	25517329	3R_25517329_SNP	G	A	6.716e^-8	0.002	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14588205	X_14588205_SNP	A	G	7.174e^-8	0.002	INTRON NetB
2R	8042347	2R_8042347_SNP	A	G	7.731e^-8	0.002	SYNONYMOUS_CODING Prp8 DOWNSTREAM CG8407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8078861	2R_8078861_SNP	C	T	8.167e^-8	0.003	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	10885504	3L_10885504_SNP	T	C	8.298e^-8	0.003	SYNONYMOUS_CODING Cpr67Fa2
2R	20388047	2R_20388047_SNP	G	A	8.886e^-8	0.003	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
3R	25519037	3R_25519037_SNP	G	T	9.385e^-8	0.003	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10882863	3L_10882863_SNP	T	A	1.007e^-7	0.003	UPSTREAM Cpr67Fa1 INTERGENIC
3R	25519047	3R_25519047_SNP	T	C	1.026e^-7	0.003	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8043676	2R_8043676_SNP	G	C	1.079e^-7	0.003	SYNONYMOUS_CODING Prp8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8020985	2R_8020985_SNP	C	G	1.117e^-7	0.003	INTERGENIC
2R	8100374	2R_8100374_SNP	T	A	1.231e^-7	0.003	UPSTREAM Sr-CII INTERGENIC
2R	8018974	2R_8018974_SNP	T	A	1.436e^-7	0.004	INTERGENIC
3R	22480873	3R_22480873_SNP	G	T	1.530e^-7	0.004	INTRON beat-VII	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14588173	X_14588173_SNP	C	T	1.558e^-7	0.004	INTRON NetB
2R	8041856	2R_8041856_SNP	G	A	1.605e^-7	0.004	UTR_3_PRIME Prp8 DOWNSTREAM CG8407	TF binding site mE1_TFBS_cad
2L	7468009	2L_7468009_SNP	A	T	1.647e^-7	0.004	INTRON CG6055
2R	8077982	2R_8077982_SNP	A	G	1.810e^-7	0.005	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	8078685	2R_8078685_SNP	G	A	2.004e^-7	0.005	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8100443	2R_8100443_SNP	A	C	2.141e^-7	0.005	UPSTREAM Sr-CII INTERGENIC
2R	8078014	2R_8078014_SNP	T	C	2.235e^-7	0.005	UPSTREAM Cyp6t3 & 1 other INTERGENIC
3R	9124849	3R_9124849_SNP	C	A	2.412e^-7	0.006	SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8082493	2R_8082493_SNP	A	T	2.608e^-7	0.006	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8087114	2R_8087114_SNP	G	A	2.608e^-7	0.006	UPSTREAM CG8858 & 1 other DOWNSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8069047	2R_8069047_SNP	C	T	2.656e^-7	0.006	NON_SYNONYMOUS_CODING wash	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8061039	2R_8061039_SNP	C	A	3.204e^-7	0.007	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8020495	2R_8020495_SNP	C	T	3.230e^-7	0.007	INTERGENIC
2R	8020497	2R_8020497_SNP	T	C	3.230e^-7	0.007	INTERGENIC
2R	8100211	2R_8100211_SNP	T	C	3.550e^-7	0.008	UPSTREAM Sr-CII INTERGENIC
2R	16106400	2R_16106400_SNP	C	T	3.579e^-7	0.008	INTERGENIC
2R	8079280	2R_8079280_SNP	A	G	3.814e^-7	0.008	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	8100469	2R_8100469_SNP	C	T	4.067e^-7	0.009	UPSTREAM Sr-CII INTERGENIC
2R	8098232	2R_8098232_SNP	A	G	4.623e^-7	0.01	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8100579	2R_8100579_SNP	G	A	4.896e^-7	0.01	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22757725	3R_22757725_SNP	T	C	5.086e^-7	0.01	INTRON sda
2R	8079569	2R_8079569_SNP	T	A	6.887e^-7	0.014	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	13782123	2R_13782123_SNP	T	C	7.440e^-7	0.015	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11483409	2R_11483409_SNP	G	A	7.965e^-7	0.016	INTERGENIC
3L	5518891	3L_5518891_SNP	A	C	8.304e^-7	0.016	INTRON Lkr
3R	20978682	3R_20978682_SNP	T	C	8.378e^-7	0.016	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26575911	3R_26575911_DEL	TCCTGTTT	T	8.698e^-7	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15194604	3R_15194604_SNP	T	G	9.225e^-7	0.017	DOWNSTREAM Ino80 INTERGENIC
X	14588334	X_14588334_SNP	A	C	9.374e^-7	0.017	INTRON NetB
3R	24513131	3R_24513131_SNP	G	T	9.490e^-7	0.017	INTRON CG9990	TF binding site mE1_TFBS_eve
3R	17248552	3R_17248552_SNP	C	T	9.498e^-7	0.017	INTRON lbl
3R	17248555	3R_17248555_SNP	A	T	9.498e^-7	0.017	INTRON lbl
2R	9724860	2R_9724860_SNP	A	G	9.671e^-7	0.017	INTRON CG6347
3L	10885514	3L_10885514_SNP	A	G	9.676e^-7	0.017	UTR_3_PRIME Cpr67Fa2
2R	8023844	2R_8023844_SNP	G	A	9.967e^-7	0.018	INTERGENIC
2R	8091687	2R_8091687_SNP	G	A	1.065e^-6	0.019	INTERGENIC
2R	13782162	2R_13782162_SNP	T	A	1.067e^-6	0.019	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7467997	2L_7467997_SNP	A	T	1.082e^-6	0.019	INTRON CG6055
2R	8043712	2R_8043712_SNP	C	T	1.089e^-6	0.019	SYNONYMOUS_CODING Prp8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9227708	3R_9227708_SNP	T	C	1.109e^-6	0.019	UPSTREAM CG9796 DOWNSTREAM CG33977 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8079175	2R_8079175_SNP	T	G	1.118e^-6	0.019	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	20978325	3R_20978325_INS	A	GCCTGGATTC	1.159e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17825753	2R_17825753_SNP	C	A	1.173e^-6	0.019	INTRON Fili
3R	22480867	3R_22480867_SNP	G	T	1.284e^-6	0.021	INTRON beat-VII	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8020194	2R_8020194_SNP	C	G	1.287e^-6	0.021	INTERGENIC
3R	24690905	3R_24690905_SNP	C	T	1.360e^-6	0.022	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	20976500	3R_20976500_SNP	G	A	1.458e^-6	0.023	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8060973	2R_8060973_SNP	G	A	1.512e^-6	0.024	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8060916	2R_8060916_SNP	T	A	1.512e^-6	0.024	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	15114759	2R_15114759_DEL	ATAATATGAAC...	A	1.544e^-6	0.024	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4255180	2L_4255180_SNP	C	T	1.550e^-6	0.024	DOWNSTREAM CR45294 & 1 other INTERGENIC
3R	24552825	3R_24552825_SNP	C	T	1.632e^-6	0.025	INTRON htt	TF binding site mE1_TFBS_chinmo
2R	12136870	2R_12136870_SNP	A	C	1.652e^-6	0.025	INTRON CngA
3R	25518886	3R_25518886_SNP	G	T	1.869e^-6	0.028	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8078684	2R_8078684_SNP	A	G	1.910e^-6	0.029	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	25518966	3R_25518966_SNP	G	T	1.947e^-6	0.029	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9724685	2R_9724685_SNP	A	C	1.967e^-6	0.029	INTRON CG6347
2R	9724686	2R_9724686_SNP	T	G	1.967e^-6	0.029	INTRON CG6347
3R	25518972	3R_25518972_SNP	A	G	2.025e^-6	0.029	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8085156	2R_8085156_SNP	A	G	2.032e^-6	0.029	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17248714	3R_17248714_SNP	T	A	2.047e^-6	0.029	INTRON lbl
2R	8100474	2R_8100474_SNP	A	T	2.048e^-6	0.029	UPSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17248646	3R_17248646_DEL	TA	T	2.076e^-6	0.029	INTRON lbl
X	14587996	X_14587996_SNP	A	T	2.104e^-6	0.029	INTRON NetB
3R	17248676	3R_17248676_SNP	T	A	2.110e^-6	0.029	INTRON lbl
2L	1918993	2L_1918993_SNP	T	C	2.123e^-6	0.029	INTRON CG7337
3R	17248675	3R_17248675_SNP	T	C	2.213e^-6	0.03	INTRON lbl
2R	8020397	2R_8020397_SNP	A	G	2.582e^-6	0.035	INTERGENIC
3L	14367878	3L_14367878_SNP	A	C	2.690e^-6	0.036	INTERGENIC
2R	8093914	2R_8093914_SNP	C	G	2.695e^-6	0.036	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10892370	3L_10892370_SNP	A	T	2.765e^-6	0.037	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16078239	2R_16078239_SNP	C	T	2.791e^-6	0.037	INTERGENIC
3R	25519048	3R_25519048_SNP	C	A	2.806e^-6	0.037	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7676661	2R_7676661_SNP	T	A	2.817e^-6	0.037	NON_SYNONYMOUS_CODING Ir48c INTRON ths
3L	10892043	3L_10892043_SNP	G	A	2.949e^-6	0.038	UTR_5_PRIME Aps UPSTREAM Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8077957	2R_8077957_SNP	A	G	2.990e^-6	0.038	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	8090560	2R_8090560_SNP	A	T	3.067e^-6	0.039	INTERGENIC
2R	9843173	2R_9843173_SNP	C	A	3.261e^-6	0.041	UTR_5_PRIME AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	7966916	2R_7966916_SNP	C	G	3.268e^-6	0.041	UTR_5_PRIME CG8888
3L	10890072	3L_10890072_SNP	C	A	3.276e^-6	0.041	INTRON Aps
3R	22446226	3R_22446226_SNP	T	A	3.296e^-6	0.041	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9698279	3L_9698279_SNP	C	A	3.337e^-6	0.041	NON_SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12181431	2L_12181431_SNP	A	C	3.650e^-6	0.045	INTRON aret
2R	9724785	2R_9724785_SNP	C	T	3.723e^-6	0.045	INTRON CG6347
2R	9724791	2R_9724791_SNP	C	T	3.723e^-6	0.045	INTRON CG6347
3L	10887531	3L_10887531_SNP	C	T	3.755e^-6	0.045	SYNONYMOUS_CODING Cpr67Fb DOWNSTREAM Aps EXON CR45171
3L	15020305	3L_15020305_SNP	T	A	3.784e^-6	0.045	INTRON Sytbeta
2R	7970622	2R_7970622_SNP	T	C	3.836e^-6	0.046	INTERGENIC
3R	25518883	3R_25518883_SNP	G	A	3.879e^-6	0.046	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	13630079	X_13630079_SNP	C	T	3.947e^-6	0.046	UTR_5_PRIME g UPSTREAM g DOWNSTREAM Grip91	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	15114713	2R_15114713_SNP	C	T	4.016e^-6	0.047	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25222445	3R_25222445_SNP	G	T	4.044e^-6	0.047	INTRON Ptp99A
3L	10891447	3L_10891447_SNP	C	T	4.052e^-6	0.047	UTR_5_PRIME Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18328201	3L_18328201_INS	A	ATAGTTA	4.077e^-6	0.047	INTERGENIC
2R	9724799	2R_9724799_SNP	T	A	4.127e^-6	0.047	INTRON CG6347
3R	21675778	3R_21675778_SNP	G	A	4.243e^-6	0.048	DOWNSTREAM CG14545 INTERGENIC
2R	20388007	2R_20388007_SNP	G	T	4.296e^-6	0.048	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
2R	8020321	2R_8020321_SNP	C	G	4.306e^-6	0.048	INTERGENIC
2L	4325203	2L_4325203_SNP	C	T	4.310e^-6	0.048	INTRON CG16857
3L	14367753	3L_14367753_SNP	A	G	4.405e^-6	0.049	INTERGENIC
3R	24690890	3R_24690890_SNP	A	G	4.452e^-6	0.049	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	25517327	3R_25517327_SNP	A	G	4.568e^-6	0.05	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8078006	2R_8078006_INS	G	GG	4.607e^-6	0.05	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2L	15069524	2L_15069524_SNP	C	T	4.639e^-6	0.05	SYNONYMOUS_CODING vas INTRON vig & 1 other	TF binding site mE1_TFBS_sens
2L	15069588	2L_15069588_SNP	G	A	4.639e^-6	0.05	NON_SYNONYMOUS_CODING vas INTRON vig & 1 other	TF binding site mE1_TFBS_sens
2L	15069595	2L_15069595_SNP	A	T	4.639e^-6	0.05	NON_SYNONYMOUS_CODING vas INTRON vig & 1 other	TF binding site mE1_TFBS_sens
2R	8060958	2R_8060958_SNP	A	C	4.738e^-6	0.05	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	2736562	3L_2736562_INS	T	TT	4.846e^-6	0.051	INTRON Mrtf
2L	7467987	2L_7467987_INS	A	AA	5.025e^-6	0.053	INTRON CG6055
X	14587908	X_14587908_SNP	C	A	5.252e^-6	0.055	INTRON NetB
2R	7676765	2R_7676765_SNP	T	C	5.257e^-6	0.055	NON_SYNONYMOUS_CODING Ir48c INTRON ths
2R	8085097	2R_8085097_SNP	T	C	5.285e^-6	0.055	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21944099	3R_21944099_SNP	T	A	5.366e^-6	0.055	INTRON CG31324
3L	14367731	3L_14367731_SNP	G	C	5.427e^-6	0.055	INTERGENIC
3L	10899297	3L_10899297_SNP	C	T	5.494e^-6	0.056	INTERGENIC
3R	17248707	3R_17248707_SNP	G	A	5.677e^-6	0.057	INTRON lbl
3R	17248724	3R_17248724_SNP	T	A	5.865e^-6	0.059	INTRON lbl
3R	17248725	3R_17248725_SNP	T	A	5.865e^-6	0.059	INTRON lbl
X	14588094	X_14588094_SNP	T	C	5.882e^-6	0.059	INTRON NetB
3R	24676526	3R_24676526_SNP	T	C	5.929e^-6	0.059	INTRON spg
3R	713017	3R_713017_SNP	C	A	6.004e^-6	0.059	INTERGENIC
3R	21125548	3R_21125548_SNP	G	T	6.028e^-6	0.059	UPSTREAM CG31288 INTERGENIC
3R	20980843	3R_20980843_SNP	G	A	6.127e^-6	0.059	INTERGENIC
2R	17825766	2R_17825766_DEL	TAAATTCGTTTACTTTTTTT...	T	6.130e^-6	0.059	INTRON Fili
3R	21944196	3R_21944196_SNP	C	G	6.397e^-6	0.062	INTRON CG31324
3R	22032306	3R_22032306_SNP	C	T	6.577e^-6	0.063	INTRON CR44320
3R	720665	3R_720665_SNP	C	T	6.828e^-6	0.065	INTERGENIC
3R	17248701	3R_17248701_SNP	T	G	7.409e^-6	0.07	INTRON lbl
3L	14373729	3L_14373729_DEL	GG	G	7.504e^-6	0.071	INTERGENIC
3L	10624569	3L_10624569_SNP	G	C	7.584e^-6	0.071	UPSTREAM CG42535 INTRON CG34001 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
3R	17248619	3R_17248619_DEL	GCAAGGGATAGGAAAAAGTT...	G	7.668e^-6	0.072	INTRON lbl
2R	8087580	2R_8087580_SNP	A	G	7.729e^-6	0.072	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9724649	2R_9724649_SNP	G	T	7.771e^-6	0.072	INTRON CG6347
3L	4114741	3L_4114741_INS	A	AA	7.862e^-6	0.073	UTR_3_PRIME Chd64 DOWNSTREAM Ack
3R	26581998	3R_26581998_SNP	A	G	7.966e^-6	0.073	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10545602	3R_10545602_SNP	G	T	8.154e^-6	0.074	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20145141	X_20145141_SNP	C	T	8.550e^-6	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17248615	3R_17248615_SNP	A	T	8.598e^-6	0.077	INTRON lbl
3R	17248616	3R_17248616_SNP	A	G	8.598e^-6	0.077	INTRON lbl
2R	17825756	2R_17825756_DEL	CAGGAAAA	C	8.654e^-6	0.078	INTRON Fili
3R	17248695	3R_17248695_SNP	A	C	8.921e^-6	0.08	INTRON lbl
2L	6733764	2L_6733764_SNP	C	G	8.974e^-6	0.08	SYNONYMOUS_CODING TTLL3B DOWNSTREAM Liprin-alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9738058	2R_9738058_SNP	A	G	9.005e^-6	0.08	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3L	10613678	3L_10613678_SNP	A	T	9.086e^-6	0.08	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	17248490	3R_17248490_SNP	A	T	9.174e^-6	0.08	INTRON lbl
3R	720725	3R_720725_SNP	C	G	9.279e^-6	0.08	INTERGENIC
3R	21285755	3R_21285755_SNP	A	G	9.280e^-6	0.08	INTRON Fur1
3R	25474402	3R_25474402_SNP	G	A	9.357e^-6	0.081	INTRON Dop1R2
3R	21128897	3R_21128897_SNP	T	C	9.399e^-6	0.081	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
2L	12344304	2L_12344304_SNP	C	T	9.486e^-6	0.081	UTR_5_PRIME bru-2 UPSTREAM CG43813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8020501	2R_8020501_DEL	T	TTTGAATCTCT...	9.569e^-6	0.081	INTERGENIC
2L	6334848	2L_6334848_SNP	A	C	9.624e^-6	0.081	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12456424	3L_12456424_SNP	C	T	9.637e^-6	0.081	NON_SYNONYMOUS_CODING eyg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14268182	3R_14268182_SNP	T	G	9.974e^-6	0.084	INTRON fru
3R	17248710	3R_17248710_SNP	A	G	1.039e^-5	0.087	INTRON lbl
X	14587903	X_14587903_SNP	A	C	1.055e^-5	0.088	INTRON NetB
3R	24672697	3R_24672697_SNP	C	T	1.070e^-5	0.089	INTRON spg
2R	8078974	2R_8078974_SNP	G	C	1.114e^-5	0.092	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	20766133	3R_20766133_SNP	C	T	1.132e^-5	0.093	NON_SYNONYMOUS_CODING ssh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8092831	2R_8092831_SNP	A	G	1.135e^-5	0.093	UPSTREAM CR45276 INTERGENIC
2R	7676766	2R_7676766_SNP	A	G	1.154e^-5	0.094	NON_SYNONYMOUS_CODING Ir48c INTRON ths
2L	1918878	2L_1918878_SNP	T	C	1.167e^-5	0.094	INTRON CG7337
X	1246366	X_1246366_SNP	C	T	1.169e^-5	0.094	SYNONYMOUS_CODING CG12773
2R	8100288	2R_8100288_SNP	T	A	1.173e^-5	0.094	UPSTREAM Sr-CII INTERGENIC
X	19737114	X_19737114_SNP	C	T	1.199e^-5	0.096	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20145143	X_20145143_SNP	C	T	1.280e^-5	0.102	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17248706	3R_17248706_SNP	T	A	1.284e^-5	0.102	INTRON lbl
2R	8017793	2R_8017793_SNP	G	A	1.297e^-5	0.103	INTERGENIC
2L	8499184	2L_8499184_SNP	T	G	1.329e^-5	0.105	INTRON Dh31
2L	16437330	2L_16437330_SNP	G	A	1.352e^-5	0.106	INTRON CG5888
2L	5940705	2L_5940705_SNP	C	T	1.355e^-5	0.106	DOWNSTREAM CR45288 INTERGENIC
3R	20980794	3R_20980794_SNP	C	T	1.369e^-5	0.106	INTERGENIC
3R	25256581	3R_25256581_SNP	G	A	1.386e^-5	0.107	INTRON Ptp99A
2R	8100594	2R_8100594_SNP	A	G	1.397e^-5	0.107	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5518528	3L_5518528_SNP	G	A	1.398e^-5	0.107	INTRON Lkr
2L	16437325	2L_16437325_SNP	A	G	1.438e^-5	0.11	INTRON CG5888
2R	8116234	2R_8116234_SNP	A	T	1.442e^-5	0.11	INTRON CG8854
3L	10882880	3L_10882880_SNP	C	T	1.443e^-5	0.11	UPSTREAM Cpr67Fa1 INTERGENIC
3R	4797847	3R_4797847_SNP	G	A	1.459e^-5	0.11	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	4532557	3L_4532557_SNP	C	T	1.467e^-5	0.11	UPSTREAM Tie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16550438	2L_16550438_SNP	G	T	1.471e^-5	0.11	UPSTREAM CG5968 INTRON CG42389
3R	18644910	3R_18644910_SNP	C	T	1.475e^-5	0.11	INTERGENIC
2L	8077297	2L_8077297_SNP	A	C	1.548e^-5	0.114	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8090938	2R_8090938_SNP	C	G	1.550e^-5	0.114	INTERGENIC
3R	19303967	3R_19303967_SNP	A	T	1.554e^-5	0.114	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8100233	2R_8100233_SNP	G	A	1.556e^-5	0.114	UPSTREAM Sr-CII INTERGENIC
3R	24503473	3R_24503473_SNP	A	C	1.598e^-5	0.117	INTRON CG9990
2L	16437332	2L_16437332_SNP	T	G	1.600e^-5	0.117	INTRON CG5888
3L	6345812	3L_6345812_SNP	C	T	1.650e^-5	0.12	UPSTREAM CG13300 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25263610	3R_25263610_SNP	A	C	1.664e^-5	0.121	INTRON Ptp99A
3R	18269129	3R_18269129_SNP	C	G	1.699e^-5	0.123	NON_SYNONYMOUS_CODING CG12499
2L	4255162	2L_4255162_SNP	A	T	1.704e^-5	0.123	DOWNSTREAM CR45294 & 1 other INTERGENIC
2L	15358792	2L_15358792_SNP	C	T	1.725e^-5	0.123	INTERGENIC
X	15540706	X_15540706_SNP	G	A	1.729e^-5	0.123	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	24722124	3R_24722124_SNP	C	G	1.745e^-5	0.124	INTRON Doa
3L	7507715	3L_7507715_SNP	C	T	1.755e^-5	0.124	INTRON CG7546
3R	20980773	3R_20980773_SNP	G	C	1.788e^-5	0.126	INTERGENIC
2R	8089531	2R_8089531_SNP	A	C	1.803e^-5	0.127	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21126467	3R_21126467_SNP	A	T	1.810e^-5	0.127	UPSTREAM CG13659 INTERGENIC
X	18874973	X_18874973_SNP	A	T	1.832e^-5	0.128	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22486373	3R_22486373_SNP	C	T	1.834e^-5	0.128	INTRON beat-VII
2R	8090075	2R_8090075_SNP	C	T	1.842e^-5	0.128	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25138069	3R_25138069_SNP	C	T	1.852e^-5	0.128	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9817362	3L_9817362_SNP	T	C	1.903e^-5	0.13	UPSTREAM Ilp5 INTRON CG43897
2L	1121845	2L_1121845_SNP	T	A	1.905e^-5	0.13	INTRON Pino
2L	7486300	2L_7486300_SNP	C	A	1.906e^-5	0.13	INTRON Ziz
X	11007465	X_11007465_SNP	G	T	1.913e^-5	0.13	NON_SYNONYMOUS_CODING CG11122	TF binding site mE1_TFBS_chinmo
3L	10346703	3L_10346703_SNP	G	A	1.927e^-5	0.13	INTRON CR44327
3R	21126504	3R_21126504_SNP	T	C	1.928e^-5	0.13	UPSTREAM CG13659 INTERGENIC
X	11626970	X_11626970_SNP	C	A	1.954e^-5	0.131	UPSTREAM inaF-B INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
3R	15312239	3R_15312239_SNP	G	A	2.006e^-5	0.134	UPSTREAM Dys INTRON Dys
3R	25517613	3R_25517613_SNP	G	A	2.009e^-5	0.134	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8090373	2R_8090373_SNP	G	A	2.024e^-5	0.135	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24101087	3R_24101087_SNP	A	G	2.112e^-5	0.14	INTERGENIC
3R	24672721	3R_24672721_SNP	T	C	2.134e^-5	0.141	INTRON spg
3R	18855016	3R_18855016_SNP	G	C	2.213e^-5	0.146	INTERGENIC	regulatory region REDfly_CRMs
3R	8172857	3R_8172857_SNP	A	G	2.219e^-5	0.146	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8122166	2R_8122166_SNP	G	T	2.228e^-5	0.146	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	24512873	3R_24512873_SNP	C	A	2.252e^-5	0.146	INTRON CG9990	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	21944225	3R_21944225_SNP	T	C	2.254e^-5	0.146	INTRON CG31324
2R	8085184	2R_8085184_SNP	A	C	2.256e^-5	0.146	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14892631	2R_14892631_SNP	T	A	2.263e^-5	0.146	INTRON tn
2R	8015913	2R_8015913_SNP	T	G	2.346e^-5	0.151	INTERGENIC
3L	10346643	3L_10346643_SNP	A	G	2.352e^-5	0.151	INTRON CR44327
3R	21944229	3R_21944229_SNP	T	G	2.358e^-5	0.151	INTRON CG31324
3R	21944216	3R_21944216_SNP	C	T	2.368e^-5	0.151	INTRON CG31324
3R	25517584	3R_25517584_SNP	C	T	2.373e^-5	0.151	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8105491	2R_8105491_SNP	A	C	2.383e^-5	0.151	INTERGENIC
2R	8090941	2R_8090941_INS	CG	C	2.398e^-5	0.151	INTERGENIC
3R	23055300	3R_23055300_SNP	T	C	2.511e^-5	0.158	UTR_3_PRIME CG31064 UPSTREAM CG42814
2R	9738043	2R_9738043_SNP	T	A	2.518e^-5	0.158	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3L	18328261	3L_18328261_SNP	A	G	2.533e^-5	0.158	INTERGENIC
2R	9738042	2R_9738042_SNP	A	T	2.541e^-5	0.158	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
X	9736527	X_9736527_SNP	G	A	2.550e^-5	0.158	INTRON CG32698
X	16721280	X_16721280_SNP	T	A	2.571e^-5	0.159	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	10224099	3L_10224099_SNP	C	T	2.642e^-5	0.163	INTERGENIC
3R	8643863	3R_8643863_SNP	G	C	2.673e^-5	0.164	INTERGENIC
3R	25129795	3R_25129795_SNP	T	C	2.684e^-5	0.164	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12780608	3L_12780608_SNP	C	T	2.698e^-5	0.164	SYNONYMOUS_CODING Atg1
3R	8643861	3R_8643861_SNP	G	A	2.699e^-5	0.164	INTERGENIC
2R	8097738	2R_8097738_SNP	C	A	2.726e^-5	0.165	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8077937	2R_8077937_SNP	T	C	2.726e^-5	0.165	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	10875073	3L_10875073_SNP	G	A	2.745e^-5	0.165	UPSTREAM CG7949 INTRON CG6409
3R	9033642	3R_9033642_INS	A	ACA	2.749e^-5	0.165	DOWNSTREAM CG8483 INTERGENIC
3R	24513294	3R_24513294_SNP	A	C	2.753e^-5	0.165	INTRON CG9990
3L	20603380	3L_20603380_DEL	TCT	T	2.791e^-5	0.166	INTRON knrl
3R	13991864	3R_13991864_SNP	C	A	2.801e^-5	0.167	NON_SYNONYMOUS_CODING Prx5 UTR_3_PRIME CG7215 DOWNSTREAM Cbp20 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23755046	3R_23755046_SNP	T	C	2.820e^-5	0.167	SYNONYMOUS_CODING mino UPSTREAM mino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8560377	3R_8560377_SNP	A	G	2.847e^-5	0.168	INTERGENIC
3R	26578440	3R_26578440_SNP	G	A	2.922e^-5	0.172	INTERGENIC
3L	7895975	3L_7895975_SNP	A	T	2.964e^-5	0.174	INTRON pbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20238052	3L_20238052_SNP	G	A	3.007e^-5	0.176	SYNONYMOUS_CODING CG6951
3R	8549347	3R_8549347_SNP	G	C	3.015e^-5	0.176	INTERGENIC
2L	20521495	2L_20521495_SNP	C	A	3.056e^-5	0.177	INTERGENIC
2L	7468101	2L_7468101_SNP	T	G	3.059e^-5	0.177	INTRON CG6055
X	7816116	X_7816116_SNP	G	A	3.060e^-5	0.177	DOWNSTREAM CG10777 & 1 other INTERGENIC
2R	8015904	2R_8015904_SNP	G	A	3.072e^-5	0.177	INTERGENIC
3R	22815823	3R_22815823_SNP	G	C	3.127e^-5	0.179	UPSTREAM CG31076 INTERGENIC
3R	17248800	3R_17248800_SNP	C	T	3.127e^-5	0.179	INTRON lbl
3R	24517166	3R_24517166_SNP	A	T	3.139e^-5	0.179	INTRON CG9990
X	11809364	X_11809364_SNP	G	C	3.147e^-5	0.179	INTRON pot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20387969	2R_20387969_SNP	C	G	3.163e^-5	0.18	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
2R	8468927	2R_8468927_SNP	T	C	3.181e^-5	0.18	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10811158	3L_10811158_SNP	C	A	3.202e^-5	0.181	DOWNSTREAM CR45247 INTERGENIC
3L	4465472	3L_4465472_SNP	T	C	3.230e^-5	0.181	SYNONYMOUS_CODING CG32241	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10678492	3L_10678492_SNP	A	G	3.255e^-5	0.181	NON_SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8087999	2R_8087999_SNP	A	G	3.271e^-5	0.181	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8100496	2R_8100496_SNP	A	G	3.277e^-5	0.181	UPSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10216849	2R_10216849_SNP	G	T	3.285e^-5	0.181	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2R	9723501	2R_9723501_SNP	A	C	3.299e^-5	0.181	UPSTREAM CG6337 & 1 other INTERGENIC
2R	8084529	2R_8084529_SNP	T	C	3.300e^-5	0.181	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	21125593	3R_21125593_SNP	C	G	3.312e^-5	0.181	UPSTREAM CG31288 INTERGENIC
3R	26581271	3R_26581271_SNP	T	A	3.325e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8091288	2R_8091288_SNP	T	G	3.327e^-5	0.181	INTERGENIC
3L	10678464	3L_10678464_SNP	C	T	3.329e^-5	0.181	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_HSA
2R	8087280	2R_8087280_SNP	T	C	3.333e^-5	0.181	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14367626	3L_14367626_SNP	G	C	3.335e^-5	0.181	INTERGENIC
X	15108623	X_15108623_SNP	T	C	3.341e^-5	0.181	INTERGENIC
3R	10299561	3R_10299561_SNP	G	C	3.349e^-5	0.181	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8084832	2R_8084832_SNP	T	C	3.372e^-5	0.182	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3L	15020978	3L_15020978_SNP	T	C	3.385e^-5	0.182	INTRON Sytbeta
2R	20387113	2R_20387113_SNP	A	G	3.398e^-5	0.182	DOWNSTREAM Yu INTRON Ssl
3R	25129790	3R_25129790_SNP	A	T	3.431e^-5	0.183	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10545594	3R_10545594_SNP	T	G	3.438e^-5	0.183	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7468062	2L_7468062_SNP	G	A	3.457e^-5	0.184	INTRON CG6055
3R	20331956	3R_20331956_SNP	C	T	3.478e^-5	0.184	INTERGENIC	transposable element FlyBase
2R	8326848	2R_8326848_SNP	G	A	3.507e^-5	0.185	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11542104	2R_11542104_SNP	G	A	3.525e^-5	0.185	INTRON CG42524
3R	23711474	3R_23711474_SNP	C	A	3.533e^-5	0.185	INTRON CG34353
3L	14367875	3L_14367875_SNP	A	C	3.533e^-5	0.185	INTERGENIC
2L	720464	2L_720464_SNP	A	G	3.567e^-5	0.186	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8098990	2R_8098990_SNP	G	T	3.584e^-5	0.187	UPSTREAM Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8181968	2R_8181968_SNP	A	T	3.675e^-5	0.191	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	712768	3R_712768_SNP	G	A	3.679e^-5	0.191	INTERGENIC
3R	17248681	3R_17248681_SNP	T	G	3.688e^-5	0.191	INTRON lbl
3R	10303164	3R_10303164_INS	A	ATATTA	3.701e^-5	0.191	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16428632	3R_16428632_SNP	T	C	3.716e^-5	0.191	INTRON bon
2L	16437258	2L_16437258_DEL	TTTTCAAA	T	3.756e^-5	0.192	INTRON CG5888
2L	16437269	2L_16437269_SNP	C	A	3.780e^-5	0.193	INTRON CG5888
2L	838455	2L_838455_DEL	AGATAGA	A	3.785e^-5	0.193	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21142843	3R_21142843_SNP	G	C	3.804e^-5	0.193	SYNONYMOUS_CODING CG10553	TF binding site mE1_TFBS_sens
3R	25179859	3R_25179859_SNP	C	T	3.813e^-5	0.193	INTERGENIC
2R	8020848	2R_8020848_SNP	C	T	3.918e^-5	0.197	INTERGENIC
X	16753234	X_16753234_SNP	C	A	3.934e^-5	0.197	INTRON CG13003
2R	8114216	2R_8114216_SNP	C	A	3.936e^-5	0.197	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	8114217	2R_8114217_SNP	A	G	3.936e^-5	0.197	START_GAINED CG8854 UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
X	8588999	X_8588999_DEL	GGG	G	3.936e^-5	0.197	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9844368	2R_9844368_SNP	C	T	3.968e^-5	0.198	INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	13172833	3L_13172833_SNP	G	T	3.977e^-5	0.198	INTERGENIC
3R	22142642	3R_22142642_DEL	CT	C	3.993e^-5	0.198	INTERGENIC
2L	16437256	2L_16437256_SNP	T	A	3.997e^-5	0.198	INTRON CG5888
3L	10780345	3L_10780345_SNP	C	T	4.041e^-5	0.199	INTERGENIC
3R	20093158	3R_20093158_SNP	G	T	4.069e^-5	0.2	INTRON jar
2R	13778975	2R_13778975_SNP	A	C	4.091e^-5	0.201	INTRON Elk
2R	7967256	2R_7967256_SNP	G	A	4.100e^-5	0.201	UPSTREAM CG8888 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9033595	3R_9033595_SNP	G	C	4.114e^-5	0.201	DOWNSTREAM CG8483 INTERGENIC
3L	17288808	3L_17288808_SNP	C	T	4.124e^-5	0.201	INTERGENIC
2L	12250734	2L_12250734_SNP	T	C	4.138e^-5	0.201	INTRON aret
2L	7467995	2L_7467995_SNP	T	A	4.141e^-5	0.201	INTRON CG6055
3L	13172918	3L_13172918_SNP	A	G	4.147e^-5	0.201	INTERGENIC
3R	21128993	3R_21128993_SNP	T	C	4.174e^-5	0.201	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
2R	8087771	2R_8087771_SNP	A	G	4.228e^-5	0.203	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	21125238	3R_21125238_SNP	T	A	4.298e^-5	0.206	UTR_5_PRIME CG31288
3L	13172818	3L_13172818_SNP	T	A	4.303e^-5	0.206	INTERGENIC
3R	21129956	3R_21129956_SNP	A	C	4.331e^-5	0.206	NON_SYNONYMOUS_CODING CG31436 DOWNSTREAM CG31370
3R	726537	3R_726537_SNP	C	T	4.340e^-5	0.206	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20521487	2L_20521487_SNP	T	A	4.340e^-5	0.206	INTERGENIC
3R	21453875	3R_21453875_SNP	A	G	4.371e^-5	0.206	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20387786	2R_20387786_SNP	A	C	4.373e^-5	0.206	UTR_5_PRIME Ssl DOWNSTREAM Prosalpha4T2
2L	16437342	2L_16437342_SNP	A	T	4.376e^-5	0.206	INTRON CG5888
X	13869032	X_13869032_SNP	G	A	4.384e^-5	0.206	INTRON mamo
2L	13051564	2L_13051564_SNP	G	T	4.431e^-5	0.208	INTRON CG9932
3L	12472403	3L_12472403_SNP	C	A	4.466e^-5	0.209	INTRON CG10663
3R	10038273	3R_10038273_SNP	G	A	4.496e^-5	0.21	INTRON Dop1R1
3L	20602029	3L_20602029_SNP	T	C	4.508e^-5	0.21	INTRON knrl
3R	17248703	3R_17248703_SNP	A	T	4.521e^-5	0.21	INTRON lbl
X	11478867	X_11478867_SNP	A	C	4.535e^-5	0.21	NON_SYNONYMOUS_CODING nod UPSTREAM CG1561	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16437267	2L_16437267_SNP	T	A	4.540e^-5	0.21	INTRON CG5888
2R	7772118	2R_7772118_SNP	G	T	4.543e^-5	0.21	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6223791	2L_6223791_SNP	G	C	4.635e^-5	0.213	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8463792	2R_8463792_SNP	G	T	4.695e^-5	0.215	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3L	9817427	3L_9817427_SNP	T	G	4.709e^-5	0.215	UPSTREAM Ilp5 INTRON CG43897
2L	6933948	2L_6933948_SNP	T	A	4.713e^-5	0.215	INTRON CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9844167	2R_9844167_SNP	T	G	4.768e^-5	0.217	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8097727	2R_8097727_SNP	C	A	4.777e^-5	0.217	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15095454	2L_15095454_SNP	A	G	4.783e^-5	0.217	INTRON CG15270
3L	9558301	3L_9558301_SNP	C	T	4.802e^-5	0.217	INTRON CG42673
3R	4711138	3R_4711138_SNP	T	A	4.805e^-5	0.217	INTRON pyd
X	14577707	X_14577707_SNP	C	T	4.821e^-5	0.217	INTERGENIC
2L	7467999	2L_7467999_MNP	AAA	GTT	4.832e^-5	0.217	INTRON CG6055
2R	8084501	2R_8084501_SNP	T	C	4.834e^-5	0.217	INTRON CG8858	TF binding site mE1_TFBS_cad
2R	8103870	2R_8103870_SNP	T	A	4.863e^-5	0.217	INTERGENIC
2R	9997528	2R_9997528_INS	A	AAAAACA	4.958e^-5	0.221	INTRON Prosap
2R	8043769	2R_8043769_SNP	T	G	4.967e^-5	0.221	SYNONYMOUS_CODING Prp8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2300991	3R_2300991_SNP	T	C	5.038e^-5	0.224	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	15323313	3L_15323313_SNP	G	A	5.064e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24690827	3R_24690827_SNP	C	G	5.114e^-5	0.225	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3L	18596455	3L_18596455_SNP	G	T	5.116e^-5	0.225	UPSTREAM CG18234 INTRON CG4174 & 1 other
3R	21127820	3R_21127820_SNP	C	T	5.135e^-5	0.225	UPSTREAM CG31370 INTRON CG13659
2L	12730756	2L_12730756_INS	T	TCAGCCATC	5.153e^-5	0.225	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22877668	3R_22877668_SNP	G	T	5.162e^-5	0.225	DOWNSTREAM TwdlT INTRON RYa-R
2R	8090564	2R_8090564_SNP	G	A	5.165e^-5	0.225	INTERGENIC
X	16721444	X_16721444_SNP	G	T	5.165e^-5	0.225	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2R	11133859	2R_11133859_SNP	C	A	5.222e^-5	0.226	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	20976880	3R_20976880_SNP	G	T	5.265e^-5	0.226	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24804899	3R_24804899_SNP	T	A	5.276e^-5	0.226	INTERGENIC
3L	9817431	3L_9817431_SNP	A	T	5.284e^-5	0.226	UPSTREAM Ilp5 INTRON CG43897
X	22056555	X_22056555_SNP	G	A	5.298e^-5	0.226	INTERGENIC
3R	24513210	3R_24513210_SNP	C	A	5.301e^-5	0.226	INTRON CG9990
2R	5321154	2R_5321154_SNP	G	T	5.305e^-5	0.226	UTR_3_PRIME Pdk DOWNSTREAM Pdk INTRON Pdk
3R	10545467	3R_10545467_SNP	T	C	5.307e^-5	0.226	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14890798	X_14890798_SNP	C	A	5.319e^-5	0.226	INTRON eag	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21126583	3R_21126583_SNP	T	C	5.321e^-5	0.226	UPSTREAM CG13659 INTERGENIC
2R	9425216	2R_9425216_SNP	C	T	5.335e^-5	0.226	UTR_3_PRIME CG6145	TF binding site mE1_TFBS_cad
3R	23756090	3R_23756090_SNP	T	C	5.343e^-5	0.226	SYNONYMOUS_CODING mino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8464448	2R_8464448_SNP	C	T	5.344e^-5	0.226	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A
2L	2187807	2L_2187807_SNP	A	G	5.365e^-5	0.226	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066	TF binding site mE1_TFBS_chinmo
2L	18347825	2L_18347825_DEL	T	AC	5.419e^-5	0.227	INTRON Fas3
3R	11001997	3R_11001997_SNP	A	G	5.421e^-5	0.227	SYNONYMOUS_CODING Mf UTR_3_PRIME Mf INTRON Gyc88E
X	15192040	X_15192040_SNP	C	T	5.422e^-5	0.227	DOWNSTREAM CG5877 INTRON CR44429 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7993343	3L_7993343_DEL	GGTGTTG	G	5.449e^-5	0.228	INTRON nmo
3L	13172813	3L_13172813_SNP	C	A	5.460e^-5	0.228	INTERGENIC
3R	21999331	3R_21999331_SNP	A	T	5.478e^-5	0.228	INTRON CG31323
X	19162358	X_19162358_SNP	C	G	5.508e^-5	0.229	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15540673	X_15540673_INS	A	ATCAGTTGACCATA...	5.523e^-5	0.229	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	24513158	3R_24513158_SNP	G	A	5.574e^-5	0.23	INTRON CG9990
3R	21128511	3R_21128511_SNP	G	A	5.576e^-5	0.23	NON_SYNONYMOUS_CODING CG31370 DOWNSTREAM CG13659
3R	16494268	3R_16494268_DEL	CTTC	C	5.600e^-5	0.23	INTERGENIC
3R	19357491	3R_19357491_SNP	C	T	5.603e^-5	0.23	UPSTREAM CG10175 INTERGENIC
2R	16202042	2R_16202042_SNP	T	A	5.628e^-5	0.231	UPSTREAM CG13868 & 1 other INTRON CG13868
3R	10312915	3R_10312915_SNP	T	G	5.648e^-5	0.231	INTERGENIC
2R	3299398	2R_3299398_SNP	A	C	5.650e^-5	0.231	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13553525	3R_13553525_SNP	A	C	5.672e^-5	0.231	INTRON Lgr1
2R	5321155	2R_5321155_SNP	T	G	5.693e^-5	0.232	UTR_3_PRIME Pdk DOWNSTREAM Pdk INTRON Pdk
2R	8091181	2R_8091181_SNP	A	C	5.708e^-5	0.232	INTERGENIC
2R	8461477	2R_8461477_SNP	A	G	5.783e^-5	0.233	INTRON ClC-b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22442757	3R_22442757_SNP	G	C	5.785e^-5	0.233	INTERGENIC
3R	15310068	3R_15310068_SNP	C	A	5.786e^-5	0.233	NON_SYNONYMOUS_CODING Dys INTRON Dys
3R	16710988	3R_16710988_SNP	T	A	5.794e^-5	0.233	INTERGENIC
2L	11203809	2L_11203809_SNP	A	T	5.806e^-5	0.233	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25474493	3R_25474493_SNP	A	T	5.825e^-5	0.233	INTRON Dop1R2
2L	20071507	2L_20071507_SNP	G	A	5.863e^-5	0.234	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12622001	2L_12622001_SNP	G	A	5.885e^-5	0.234	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8076495	2L_8076495_SNP	G	A	5.891e^-5	0.234	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
X	7317279	X_7317279_SNP	T	A	5.892e^-5	0.234	INTERGENIC
3L	15323355	3L_15323355_DEL	CG	C	5.921e^-5	0.234	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	713220	3R_713220_SNP	C	A	5.932e^-5	0.234	INTERGENIC
3R	26572910	3R_26572910_SNP	A	G	5.947e^-5	0.234	UPSTREAM Npc2h & 1 other INTERGENIC
2R	17130305	2R_17130305_SNP	C	A	5.951e^-5	0.234	INTRON ASPP
2R	8097803	2R_8097803_SNP	T	C	6.016e^-5	0.236	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18177208	2L_18177208_SNP	A	G	6.036e^-5	0.236	INTRON CG42750	transposable element FlyBase
2L	19924440	2L_19924440_SNP	T	A	6.052e^-5	0.236	DOWNSTREAM CR43827 INTRON sick
3R	21127815	3R_21127815_DEL	A	ATA	6.053e^-5	0.236	UPSTREAM CG31370 INTRON CG13659
2L	11808502	2L_11808502_SNP	A	T	6.085e^-5	0.237	UTR_5_PRIME crol INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
X	13159288	X_13159288_SNP	A	G	6.093e^-5	0.237	SYNONYMOUS_CODING HDAC4
3R	20108655	3R_20108655_SNP	T	C	6.155e^-5	0.239	EXON CR45662	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11131310	3L_11131310_SNP	T	A	6.224e^-5	0.241	INTRON CG32082
2L	19905020	2L_19905020_SNP	G	A	6.236e^-5	0.241	INTRON sick
2R	8100504	2R_8100504_SNP	A	T	6.248e^-5	0.241	UPSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9291631	3L_9291631_SNP	G	A	6.253e^-5	0.241	INTERGENIC
X	8911304	X_8911304_SNP	C	A	6.262e^-5	0.241	INTRON CR43836 & 1 other
3L	3638754	3L_3638754_SNP	C	G	6.271e^-5	0.241	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11943856	2L_11943856_SNP	A	C	6.317e^-5	0.242	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
X	15655375	X_15655375_SNP	G	T	6.329e^-5	0.242	SYNONYMOUS_CODING mRpL3 UPSTREAM Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	21125913	3R_21125913_SNP	C	T	6.339e^-5	0.242	UPSTREAM CG31288 & 1 other INTERGENIC
3R	26579525	3R_26579525_SNP	G	A	6.375e^-5	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9396806	3L_9396806_SNP	G	A	6.394e^-5	0.242	INTERGENIC
2R	13751616	2R_13751616_SNP	C	G	6.396e^-5	0.242	NON_SYNONYMOUS_CODING thr
2L	832149	2L_832149_SNP	A	G	6.461e^-5	0.244	UTR_3_PRIME dock	TF binding site mE1_TFBS_cad
2R	8097749	2R_8097749_SNP	C	T	6.487e^-5	0.245	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21409703	3R_21409703_SNP	T	A	6.508e^-5	0.245	UPSTREAM CG4582 INTRON msi
2R	8022418	2R_8022418_SNP	A	G	6.527e^-5	0.245	INTERGENIC
3L	15323360	3L_15323360_DEL	AG	T	6.551e^-5	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15323379	3L_15323379_SNP	G	T	6.551e^-5	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20708182	3R_20708182_SNP	C	T	6.588e^-5	0.246	SYNONYMOUS_CODING CG31121 DOWNSTREAM CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14367859	3L_14367859_SNP	C	T	6.656e^-5	0.248	INTERGENIC
3R	9041045	3R_9041045_SNP	A	G	6.684e^-5	0.249	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12282122	2R_12282122_SNP	C	T	6.703e^-5	0.249	INTRON Sema-2b
3R	19096070	3R_19096070_SNP	A	G	6.717e^-5	0.249	UPSTREAM orb INTRON orb
2L	12232822	2L_12232822_SNP	C	T	6.733e^-5	0.249	INTRON aret
X	15540684	X_15540684_SNP	T	G	6.738e^-5	0.249	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	20970621	3R_20970621_SNP	C	A	6.757e^-5	0.249	INTERGENIC
2L	5386589	2L_5386589_SNP	G	A	6.771e^-5	0.249	UPSTREAM CR44745 INTERGENIC
2L	4040523	2L_4040523_SNP	A	G	6.790e^-5	0.249	INTRON ed
3R	22586063	3R_22586063_SNP	G	A	6.796e^-5	0.249	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24690821	3R_24690821_SNP	C	A	6.840e^-5	0.25	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
X	13932204	X_13932204_SNP	A	G	6.847e^-5	0.25	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9573085	2R_9573085_SNP	A	T	6.887e^-5	0.251	INTRON fas
3R	26641711	3R_26641711_SNP	C	T	6.930e^-5	0.252	INTRON cindr
3L	9113481	3L_9113481_SNP	A	T	6.944e^-5	0.252	INTRON bol
X	11311517	X_11311517_SNP	C	T	6.995e^-5	0.253	UPSTREAM Or10a INTERGENIC
3R	19303964	3R_19303964_SNP	T	A	7.048e^-5	0.254	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7235604	2L_7235604_SNP	C	T	7.049e^-5	0.254	INTRON Ndae1
X	18764868	X_18764868_SNP	G	A	7.103e^-5	0.255	INTRON CG34401
X	19485055	X_19485055_SNP	G	C	7.104e^-5	0.255	UPSTREAM CG14219 INTERGENIC
3R	10299730	3R_10299730_SNP	G	T	7.129e^-5	0.255	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	17918374	3L_17918374_SNP	G	T	7.140e^-5	0.255	INTERGENIC
3R	24825602	3R_24825602_SNP	G	A	7.148e^-5	0.255	INTRON wat
3L	4532320	3L_4532320_SNP	G	T	7.167e^-5	0.255	UPSTREAM Tie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8115961	2R_8115961_SNP	T	G	7.176e^-5	0.255	INTRON CG8854
3R	24678352	3R_24678352_SNP	G	A	7.192e^-5	0.255	DOWNSTREAM Inx3 INTRON spg
3L	19215867	3L_19215867_SNP	G	A	7.195e^-5	0.255	INTRON fz2
2L	3974274	2L_3974274_SNP	A	C	7.210e^-5	0.255	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7894338	3L_7894338_SNP	C	T	7.284e^-5	0.257	SYNONYMOUS_CODING pbl INTRON pbl
3L	8024914	3L_8024914_SNP	T	C	7.335e^-5	0.259	INTRON nmo
3R	24657596	3R_24657596_SNP	C	T	7.388e^-5	0.26	UTR_5_PRIME WASp UPSTREAM WASp DOWNSTREAM Apc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	11843443	X_11843443_SNP	A	G	7.400e^-5	0.26	INTRON cac	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23204811	3L_23204811_INS	AT	C	7.500e^-5	0.262	INTRON nAChRalpha4	transposable element FlyBase
2L	11587959	2L_11587959_SNP	T	C	7.510e^-5	0.262	UPSTREAM CR44496 INTRON kek2
3L	10874204	3L_10874204_SNP	C	T	7.547e^-5	0.262	SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12707538	2R_12707538_SNP	A	G	7.549e^-5	0.262	UPSTREAM CR43417 INTERGENIC
2L	11577728	2L_11577728_SNP	T	A	7.555e^-5	0.262	INTERGENIC
2R	8097777	2R_8097777_SNP	T	C	7.555e^-5	0.262	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12326367	3R_12326367_SNP	G	T	7.563e^-5	0.262	INTRON decay
3R	6327379	3R_6327379_SNP	G	A	7.565e^-5	0.262	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15142387	2L_15142387_SNP	C	A	7.587e^-5	0.262	INTERGENIC	insulator Insulator_Class_II.mE01
3L	8305431	3L_8305431_SNP	C	T	7.592e^-5	0.262	SYNONYMOUS_CODING CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8097748	2R_8097748_SNP	A	T	7.649e^-5	0.263	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22220200	X_22220200_SNP	T	C	7.673e^-5	0.263	INTERGENIC
2L	20941733	2L_20941733_DEL	TAACAAG	T	7.677e^-5	0.263	INTERGENIC
2R	7962472	2R_7962472_SNP	C	G	7.706e^-5	0.264	INTRON CG8888
2R	8097726	2R_8097726_SNP	A	C	7.711e^-5	0.264	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8139770	3L_8139770_SNP	C	G	7.750e^-5	0.264	INTRON CG13676
3R	26578770	3R_26578770_SNP	C	T	7.755e^-5	0.264	INTERGENIC
X	1217248	X_1217248_SNP	G	C	7.762e^-5	0.264	NON_SYNONYMOUS_CODING fs_1_N UPSTREAM DAAM	TF binding site mE1_TFBS_chinmo
3L	8142540	3L_8142540_SNP	C	T	7.783e^-5	0.264	INTRON CG13676
3L	10458818	3L_10458818_SNP	C	T	7.784e^-5	0.264	UPSTREAM S-Lap3 INTRON S-Lap3
3L	19886944	3L_19886944_SNP	C	A	7.802e^-5	0.264	NON_SYNONYMOUS_CODING Su_Tpl_ INTRON Mi-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11624896	2R_11624896_SNP	T	C	7.896e^-5	0.267	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8142677	3L_8142677_SNP	A	G	7.986e^-5	0.269	INTRON CG13676
3L	8024660	3L_8024660_SNP	A	T	7.994e^-5	0.269	INTRON nmo
2L	10820122	2L_10820122_SNP	G	A	7.998e^-5	0.269	NON_SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
2L	16437276	2L_16437276_DEL	AATTAGCGCATTTCTATACC...	A	8.110e^-5	0.272	INTRON CG5888
3R	26193238	3R_26193238_SNP	T	C	8.171e^-5	0.273	UTR_3_PRIME hdc
3L	13287133	3L_13287133_SNP	C	T	8.183e^-5	0.273	INTERGENIC
2L	18820824	2L_18820824_SNP	T	C	8.196e^-5	0.273	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8490413	2R_8490413_SNP	G	C	8.208e^-5	0.273	INTRON Amph
X	18404409	X_18404409_SNP	G	A	8.296e^-5	0.275	INTRON Ggt-1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	13285663	3L_13285663_SNP	C	T	8.300e^-5	0.275	UPSTREAM CR43912 INTERGENIC
3L	23577046	3L_23577046_DEL	CGCAGGTTATATAAAACAGT...	C	8.308e^-5	0.275	INTRON AGO3
2R	8087287	2R_8087287_INS	T	TAT	8.322e^-5	0.275	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	8092470	2R_8092470_SNP	A	T	8.328e^-5	0.275	INTERGENIC
3R	25156795	3R_25156795_DEL	G	GCTACT	8.397e^-5	0.276	INTERGENIC
3R	21518942	3R_21518942_SNP	A	G	8.404e^-5	0.276	INTERGENIC
2R	8097753	2R_8097753_SNP	T	C	8.437e^-5	0.277	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16721420	X_16721420_SNP	A	G	8.488e^-5	0.278	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	15243348	3L_15243348_SNP	A	G	8.520e^-5	0.279	INTERGENIC
2L	11838895	2L_11838895_SNP	T	A	8.579e^-5	0.28	DOWNSTREAM Sfp33A2 & 1 other INTRON Pde1c
3R	8710183	3R_8710183_SNP	A	C	8.586e^-5	0.28	INTERGENIC
3R	24172678	3R_24172678_SNP	C	T	8.593e^-5	0.28	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7488808	2L_7488808_SNP	A	C	8.658e^-5	0.281	INTRON Ziz
3R	9119864	3R_9119864_SNP	A	G	8.674e^-5	0.281	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	21124969	3R_21124969_SNP	G	T	8.718e^-5	0.282	INTRON CG31288
3R	24692019	3R_24692019_SNP	C	G	8.748e^-5	0.282	INTRON spg
3R	24690881	3R_24690881_SNP	G	T	8.770e^-5	0.282	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
X	11007178	X_11007178_SNP	G	A	8.788e^-5	0.282	SYNONYMOUS_CODING CG11122 DOWNSTREAM Hsp60	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15391163	X_15391163_INS	A	ATCATATA	8.796e^-5	0.282	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	15391168	X_15391168_INS	C	CC	8.796e^-5	0.282	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	21128234	3R_21128234_DEL	C	CTGAACC	8.820e^-5	0.282	UTR_5_PRIME CG31370 DOWNSTREAM CG13659
3R	26581840	3R_26581840_SNP	A	G	8.824e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11133382	2R_11133382_SNP	C	A	8.842e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15480662	3L_15480662_SNP	A	G	8.863e^-5	0.283	INTERGENIC
3R	20842014	3R_20842014_SNP	T	C	8.897e^-5	0.283	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad
3L	23601179	3L_23601179_SNP	G	C	8.902e^-5	0.283	INTRON AGO3
3L	15146420	3L_15146420_INS	A	AA	8.933e^-5	0.283	UTR_3_PRIME FucTA DOWNSTREAM Msh6
3R	24688097	3R_24688097_SNP	C	T	8.948e^-5	0.283	INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13569488	3R_13569488_SNP	C	T	9.005e^-5	0.285	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21869399	2L_21869399_SNP	C	T	9.019e^-5	0.285	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23605025	3L_23605025_SNP	A	C	9.065e^-5	0.286	INTRON AGO3	transposable element FlyBase
3R	15322088	3R_15322088_SNP	A	G	9.086e^-5	0.286	INTRON Dys
3R	27437677	3R_27437677_DEL	GC	A	9.109e^-5	0.286	UPSTREAM CycG INTRON CycG & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	14616437	2R_14616437_SNP	A	G	9.137e^-5	0.286	NON_SYNONYMOUS_CODING List INTRON Hs3st-A
3R	12754592	3R_12754592_SNP	G	T	9.146e^-5	0.286	UTR_3_PRIME Abd-B
X	1008435	X_1008435_SNP	A	G	9.164e^-5	0.286	INTRON CG3655
2L	6933916	2L_6933916_SNP	C	T	9.194e^-5	0.286	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21125263	3R_21125263_SNP	T	C	9.197e^-5	0.286	UTR_5_PRIME CG31288
2L	11733657	2L_11733657_INS	T	TCTTTCTCTTTTT...	9.200e^-5	0.286	INTERGENIC
3R	12875435	3R_12875435_SNP	G	T	9.233e^-5	0.286	INTERGENIC
2R	8090853	2R_8090853_SNP	C	A	9.242e^-5	0.286	INTERGENIC
2R	8100477	2R_8100477_SNP	C	T	9.270e^-5	0.287	UPSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11357425	2L_11357425_SNP	G	A	9.285e^-5	0.287	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	10994504	3L_10994504_SNP	A	G	9.308e^-5	0.287	DOWNSTREAM snoRNA:Me18S-G962 INTRON klu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8022280	2R_8022280_DEL	A	AA	9.343e^-5	0.288	INTERGENIC
3R	10036958	3R_10036958_SNP	T	G	9.435e^-5	0.29	INTRON Dop1R1
3R	7360631	3R_7360631_SNP	A	G	9.499e^-5	0.292	UPSTREAM CR45056 INTRON dpr4
2R	12968510	2R_12968510_SNP	C	A	9.548e^-5	0.292	INTRON CG30460
3L	15263986	3L_15263986_SNP	T	C	9.556e^-5	0.292	INTERGENIC
3R	10280953	3R_10280953_SNP	C	T	9.571e^-5	0.292	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2551434	3L_2551434_SNP	C	T	9.600e^-5	0.292	INTRON Spn
X	16054820	X_16054820_SNP	G	A	9.610e^-5	0.292	INTERGENIC
X	4569628	X_4569628_SNP	T	C	9.618e^-5	0.292	INTRON rap
3L	15222133	3L_15222133_SNP	T	A	9.661e^-5	0.293	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11220056	X_11220056_DEL	CC	C	9.686e^-5	0.293	UPSTREAM l_1_10Bb INTRON CG1657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9984076	3R_9984076_SNP	C	T	9.738e^-5	0.295	NON_SYNONYMOUS_CODING CG31327 UPSTREAM CG31533
X	15301845	X_15301845_SNP	A	T	9.781e^-5	0.295	UTR_3_PRIME Cngl INTRON Cngl	TF binding site mE1_TFBS_HSA
3L	16089705	3L_16089705_SNP	T	A	9.782e^-5	0.295	DOWNSTREAM ClC-c INTRON CG13074	TF binding site mE1_TFBS_cad
3L	6989688	3L_6989688_SNP	C	G	9.785e^-5	0.295	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13778899	2R_13778899_SNP	T	C	9.806e^-5	0.295	INTRON Elk
3R	20980851	3R_20980851_SNP	C	T	9.880e^-5	0.297	INTERGENIC
3R	21126021	3R_21126021_SNP	C	T	9.940e^-5	0.297	UPSTREAM CG31288 & 1 other INTERGENIC
2R	8093736	2R_8093736_SNP	T	G	9.940e^-5	0.297	EXON CR45276	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12040682	3R_12040682_SNP	A	T	9.986e^-5	0.298	DOWNSTREAM CR45641 INTERGENIC
3R	12040684	3R_12040684_SNP	G	T	9.986e^-5	0.298	DOWNSTREAM CR45641 INTERGENIC
X	7118191	X_7118191_SNP	C	T	9.993e^-5	0.298	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9007178	X_9007178_SNP	T	A	1.001e^-4	0.298	INTRON AP-1gamma
X	16047044	X_16047044_SNP	G	T	1.005e^-4	0.298	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12299909	2R_12299909_SNP	C	T	1.005e^-4	0.298	INTRON Sema-2b
3L	3638579	3L_3638579_INS	A	AA	1.012e^-4	0.299	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	3337361	X_3337361_SNP	A	G	1.023e^-4	0.302	INTRON CR44999 & 1 other
X	12070812	X_12070812_SNP	A	C	1.023e^-4	0.302	UTR_3_PRIME CG1924 INTRON Ten-a	insulator Insulator_Class_II.mE01
3R	25221725	3R_25221725_SNP	A	G	1.025e^-4	0.302	INTRON Ptp99A
2R	8115960	2R_8115960_SNP	T	G	1.028e^-4	0.302	INTRON CG8854
2L	11838894	2L_11838894_SNP	G	C	1.028e^-4	0.302	DOWNSTREAM Sfp33A2 & 1 other INTRON Pde1c
3L	14585236	3L_14585236_SNP	T	G	1.030e^-4	0.302	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20425788	X_20425788_SNP	C	G	1.037e^-4	0.303	INTRON RunxB
2R	8086673	2R_8086673_SNP	T	A	1.040e^-4	0.304	UPSTREAM CG8858 DOWNSTREAM snoRNA:Me28S-C3420b & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl
2R	12968453	2R_12968453_SNP	C	T	1.041e^-4	0.304	INTRON CG30460
3R	695747	3R_695747_SNP	T	A	1.049e^-4	0.305	DOWNSTREAM opa INTERGENIC
X	19162176	X_19162176_DEL	TGTTATTTTTTCTTA...	T	1.050e^-4	0.305	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16428653	3R_16428653_SNP	G	A	1.052e^-4	0.306	INTRON bon
3L	13173647	3L_13173647_SNP	C	G	1.057e^-4	0.306	INTERGENIC
3L	14367627	3L_14367627_SNP	G	T	1.058e^-4	0.306	INTERGENIC
2L	15142412	2L_15142412_SNP	G	A	1.059e^-4	0.306	INTERGENIC
3R	24165410	3R_24165410_SNP	A	T	1.067e^-4	0.308	START_GAINED Gfat2 UTR_5_PRIME Gfat2 UPSTREAM Moca-cyp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22446198	3R_22446198_DEL	CTTCTTTC	C	1.076e^-4	0.31	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10785571	2L_10785571_SNP	G	T	1.078e^-4	0.31	INTRON CG31869 EXON CR44582
2R	8464600	2R_8464600_SNP	C	T	1.079e^-4	0.31	INTRON Sin3A
2L	6832777	2L_6832777_SNP	C	G	1.082e^-4	0.31	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24676578	3R_24676578_SNP	C	G	1.087e^-4	0.311	INTRON spg
2R	7822328	2R_7822328_SNP	A	G	1.098e^-4	0.314	INTERGENIC
3R	21518944	3R_21518944_SNP	T	C	1.098e^-4	0.314	INTERGENIC
3R	24503555	3R_24503555_SNP	T	C	1.103e^-4	0.315	INTRON CG9990
3R	24033638	3R_24033638_SNP	C	T	1.106e^-4	0.315	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18252468	3L_18252468_SNP	C	A	1.106e^-4	0.315	INTERGENIC
2R	12453346	2R_12453346_SNP	T	C	1.112e^-4	0.316	UPSTREAM CG4945 & 1 other INTERGENIC
2L	12718273	2L_12718273_SNP	T	A	1.114e^-4	0.316	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	11518974	3L_11518974_SNP	G	A	1.116e^-4	0.316	INTRON Mob2
2R	8095372	2R_8095372_INS	T	TT	1.117e^-4	0.316	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18328053	3L_18328053_SNP	G	A	1.118e^-4	0.316	INTERGENIC
2L	11808508	2L_11808508_INS	A	AAGAACAGA	1.125e^-4	0.316	UTR_5_PRIME crol INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
3R	10043794	3R_10043794_SNP	G	A	1.125e^-4	0.316	UPSTREAM CG9649 DOWNSTREAM CG31326 INTERGENIC
X	22207813	X_22207813_SNP	G	A	1.126e^-4	0.316	DOWNSTREAM CR45464 INTERGENIC
2R	7401366	2R_7401366_SNP	G	A	1.128e^-4	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14470153	3L_14470153_SNP	T	C	1.129e^-4	0.316	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21675720	3R_21675720_SNP	A	T	1.129e^-4	0.316	DOWNSTREAM CG14545 INTERGENIC
3R	17248771	3R_17248771_INS	A	ATTTGATCT	1.131e^-4	0.316	INTRON lbl
3L	12170885	3L_12170885_SNP	G	T	1.137e^-4	0.317	INTRON CAH2
2R	12967988	2R_12967988_SNP	C	G	1.141e^-4	0.318	INTRON CG30460
3L	12357469	3L_12357469_SNP	C	T	1.144e^-4	0.318	INTERGENIC
3R	18559699	3R_18559699_SNP	A	G	1.145e^-4	0.318	UPSTREAM Takl2 DOWNSTREAM Dcr-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	2237097	3L_2237097_SNP	C	A	1.145e^-4	0.318	UPSTREAM ACXD & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	12260604	2L_12260604_SNP	T	C	1.148e^-4	0.318	INTRON aret
2R	14938328	2R_14938328_SNP	T	C	1.152e^-4	0.318	INTERGENIC
3R	25889724	3R_25889724_SNP	C	G	1.154e^-4	0.318	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	6010051	3R_6010051_SNP	G	T	1.155e^-4	0.318	INTRON CG12814	TF binding site mE1_TFBS_cad
X	16420576	X_16420576_SNP	A	T	1.157e^-4	0.318	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8084916	2R_8084916_SNP	T	A	1.158e^-4	0.318	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9103125	3R_9103125_SNP	C	T	1.165e^-4	0.32	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12232871	2L_12232871_SNP	C	A	1.172e^-4	0.32	INTRON aret
2L	3972743	2L_3972743_SNP	G	C	1.173e^-4	0.32	INTRON fred
3R	15321651	3R_15321651_INS	T	TA	1.173e^-4	0.32	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16806274	X_16806274_SNP	T	C	1.174e^-4	0.32	UPSTREAM CG4928 INTRON CR44754
X	16723338	X_16723338_SNP	C	T	1.175e^-4	0.32	INTRON CG13004
3R	16494015	3R_16494015_SNP	A	T	1.176e^-4	0.32	INTERGENIC
3R	16494023	3R_16494023_SNP	G	A	1.176e^-4	0.32	INTERGENIC
X	9489820	X_9489820_SNP	G	A	1.188e^-4	0.322	DOWNSTREAM CR45543 INTERGENIC
3L	12085445	3L_12085445_INS	A	AT	1.191e^-4	0.322	INTERGENIC
3R	26055193	3R_26055193_SNP	T	G	1.192e^-4	0.322	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	12171072	3L_12171072_SNP	A	G	1.192e^-4	0.322	INTRON CAH2
2R	8093827	2R_8093827_SNP	T	C	1.193e^-4	0.322	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13173498	3L_13173498_SNP	G	T	1.198e^-4	0.322	INTERGENIC
3L	13285071	3L_13285071_SNP	T	A	1.198e^-4	0.322	UPSTREAM CR43912 INTERGENIC
2L	18860618	2L_18860618_SNP	G	T	1.198e^-4	0.322	UTR_3_PRIME tup
3R	695754	3R_695754_SNP	G	A	1.207e^-4	0.324	DOWNSTREAM opa INTERGENIC
2L	15129833	2L_15129833_DEL	AA	A	1.212e^-4	0.324	DOWNSTREAM CR44706 EXON CR43854
2L	11931056	2L_11931056_SNP	G	A	1.218e^-4	0.326	INTERGENIC
X	19162257	X_19162257_SNP	C	A	1.220e^-4	0.326	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15192027	X_15192027_SNP	G	A	1.223e^-4	0.326	DOWNSTREAM CG5877 INTRON CR44429 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	4038186	2L_4038186_SNP	C	T	1.230e^-4	0.327	INTRON ed
X	17154062	X_17154062_SNP	G	C	1.233e^-4	0.328	SYNONYMOUS_CODING f INTRON f	TF binding site mE1_TFBS_chinmo
X	3791539	X_3791539_SNP	G	T	1.238e^-4	0.328	INTRON CG42541
3L	13172909	3L_13172909_DEL	GAATG	G	1.239e^-4	0.328	INTERGENIC
3R	24527137	3R_24527137_SNP	C	T	1.240e^-4	0.328	INTRON htt	TF binding site mE1_TFBS_cad
3R	21129001	3R_21129001_SNP	G	A	1.242e^-4	0.328	NON_SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
2R	8115983	2R_8115983_SNP	A	T	1.243e^-4	0.328	INTRON CG8854
3R	14282897	3R_14282897_SNP	A	C	1.250e^-4	0.329	INTRON fru
2L	9052122	2L_9052122_SNP	C	T	1.251e^-4	0.329	UTR_3_PRIME CG31708
X	3152190	X_3152190_SNP	A	G	1.256e^-4	0.33	INTRON dnc
3R	26581259	3R_26581259_SNP	G	A	1.257e^-4	0.33	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7967517	2R_7967517_SNP	A	G	1.261e^-4	0.33	UPSTREAM CG8888 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1278359	2L_1278359_SNP	G	T	1.263e^-4	0.33	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19922521	2L_19922521_SNP	A	G	1.263e^-4	0.33	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	14405426	2L_14405426_SNP	A	T	1.264e^-4	0.33	INTRON elB	TF binding site mE1_TFBS_cad
3R	9239355	3R_9239355_SNP	G	T	1.266e^-4	0.33	INTRON yellow-e	TF binding site BDTNP1_TFBS_prd
X	16722210	X_16722210_SNP	C	T	1.269e^-4	0.33	SPLICE_SITE_DONOR CG13004 UPSTREAM CG13004 INTRON CG13004
2L	5299710	2L_5299710_SNP	G	A	1.269e^-4	0.33	UTR_5_PRIME vri INTRON vri
3R	26580162	3R_26580162_SNP	G	C	1.269e^-4	0.33	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	3555350	X_3555350_SNP	C	T	1.272e^-4	0.33	INTRON AstA-R1
2R	12968372	2R_12968372_SNP	C	A	1.272e^-4	0.33	INTRON CG30460
3L	15637477	3L_15637477_SNP	G	T	1.275e^-4	0.33	INTRON comm3
3R	21126064	3R_21126064_SNP	C	G	1.278e^-4	0.33	UPSTREAM CG31288 & 1 other INTERGENIC
2L	20769943	2L_20769943_SNP	C	A	1.285e^-4	0.331	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	2795587	X_2795587_SNP	G	A	1.287e^-4	0.332	INTRON kirre
3R	20970015	3R_20970015_SNP	T	A	1.290e^-4	0.332	INTERGENIC
X	16054809	X_16054809_SNP	G	A	1.301e^-4	0.334	INTERGENIC
2L	2480117	2L_2480117_SNP	C	T	1.302e^-4	0.334	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	8084634	2R_8084634_SNP	A	C	1.302e^-4	0.334	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
X	2354773	X_2354773_DEL	CC	C	1.304e^-4	0.334	INTRON boi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10877018	3L_10877018_INS	T	TT	1.310e^-4	0.335	DOWNSTREAM CG6404 & 1 other INTERGENIC
X	19162122	X_19162122_SNP	A	T	1.313e^-4	0.335	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6733506	2L_6733506_SNP	T	C	1.314e^-4	0.335	SYNONYMOUS_CODING TTLL3B DOWNSTREAM Liprin-alpha	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	734210	3L_734210_SNP	T	C	1.320e^-4	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cnc
3R	22616581	3R_22616581_SNP	G	A	1.321e^-4	0.335	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	1270435	X_1270435_SNP	C	T	1.321e^-4	0.335	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9164752	3L_9164752_SNP	A	G	1.332e^-4	0.337	INTRON Rdl
X	13622210	X_13622210_SNP	A	G	1.334e^-4	0.337	NON_SYNONYMOUS_CODING g
3R	26817097	3R_26817097_SNP	C	A	1.335e^-4	0.337	DOWNSTREAM CG31007 INTRON 5-HT7
2L	3055037	2L_3055037_SNP	G	T	1.342e^-4	0.339	INTRON v_2_k05816
3R	26581415	3R_26581415_SNP	T	C	1.346e^-4	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18594907	3L_18594907_SNP	T	C	1.347e^-4	0.339	SPLICE_SITE_REGION CG13380 & 1 other INTRON CG13380 & 1 other
2R	8115953	2R_8115953_SNP	T	A	1.350e^-4	0.339	INTRON CG8854
2R	8098983	2R_8098983_SNP	T	G	1.353e^-4	0.34	UPSTREAM Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11133841	2R_11133841_SNP	C	T	1.357e^-4	0.34	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	15229088	3L_15229088_SNP	A	T	1.365e^-4	0.342	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	16054653	X_16054653_SNP	C	A	1.371e^-4	0.343	INTERGENIC
3L	12780380	3L_12780380_SNP	T	A	1.384e^-4	0.346	INTRON Atg1
3R	10552282	3R_10552282_DEL	CTTAATTAATGCC...	C	1.397e^-4	0.348	INTRON CG7530
X	14075386	X_14075386_SNP	G	A	1.400e^-4	0.349	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
3L	23583831	3L_23583831_SNP	C	T	1.403e^-4	0.349	INTRON AGO3
3L	15263964	3L_15263964_SNP	C	T	1.405e^-4	0.349	INTERGENIC
3R	21944257	3R_21944257_SNP	T	C	1.405e^-4	0.349	INTRON CG31324
X	1396162	X_1396162_SNP	C	G	1.416e^-4	0.35	NON_SYNONYMOUS_CODING Nmdar2 UPSTREAM Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3R	20969995	3R_20969995_SNP	G	A	1.416e^-4	0.35	INTERGENIC
X	1219171	X_1219171_SNP	C	T	1.420e^-4	0.351	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
3R	25535845	3R_25535845_SNP	C	G	1.423e^-4	0.351	INTERGENIC
3L	7723991	3L_7723991_SNP	G	T	1.429e^-4	0.352	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11587950	2L_11587950_SNP	G	A	1.430e^-4	0.352	UPSTREAM CR44496 INTRON kek2
3L	8305366	3L_8305366_SNP	A	T	1.437e^-4	0.352	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21288616	3R_21288616_SNP	G	A	1.438e^-4	0.352	INTRON Fur1
3L	5519285	3L_5519285_SNP	G	A	1.439e^-4	0.352	INTRON Lkr
3L	16299541	3L_16299541_SNP	G	A	1.442e^-4	0.352	UPSTREAM CG13063 & 1 other INTERGENIC
3R	25154464	3R_25154464_SNP	G	A	1.443e^-4	0.352	INTERGENIC
2R	9724652	2R_9724652_SNP	T	G	1.445e^-4	0.352	INTRON CG6347
2R	8135656	2R_8135656_SNP	G	A	1.446e^-4	0.352	INTERGENIC
3L	18547192	3L_18547192_SNP	G	A	1.448e^-4	0.352	INTERGENIC
3R	25263556	3R_25263556_SNP	C	T	1.448e^-4	0.352	INTRON Ptp99A
X	2554099	X_2554099_SNP	T	C	1.449e^-4	0.352	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12232869	2L_12232869_SNP	T	G	1.449e^-4	0.352	INTRON aret
X	20425635	X_20425635_SNP	A	G	1.457e^-4	0.353	INTRON RunxB
3R	16505088	3R_16505088_SNP	T	C	1.459e^-4	0.353	DOWNSTREAM CR43452 INTERGENIC
3L	13166463	3L_13166463_SNP	A	T	1.461e^-4	0.353	INTERGENIC
3L	9080053	3L_9080053_DEL	GATATCAGCCACCACAGCCA...	G	1.473e^-4	0.355	CODON_DELETION Tequila INTRON Tequila
3L	18569713	3L_18569713_SNP	A	G	1.474e^-4	0.355	DOWNSTREAM AstC-R1 INTERGENIC
X	22219545	X_22219545_SNP	T	A	1.478e^-4	0.356	INTERGENIC
3R	12043748	3R_12043748_SNP	C	A	1.483e^-4	0.356	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	924916	X_924916_SNP	C	G	1.483e^-4	0.356	NON_SYNONYMOUS_CODING CG33082 UPSTREAM CG14630 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	17064157	3R_17064157_SNP	C	T	1.484e^-4	0.356	INTERGENIC	regulatory region REDfly_CRMs
3R	22378924	3R_22378924_SNP	A	T	1.493e^-4	0.357	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11577717	2L_11577717_SNP	T	A	1.493e^-4	0.357	INTERGENIC
2R	9378612	2R_9378612_SNP	G	T	1.494e^-4	0.357	INTRON bbc
3R	6009985	3R_6009985_SNP	G	T	1.497e^-4	0.357	INTRON CG12814
3L	9113482	3L_9113482_SNP	A	T	1.498e^-4	0.357	INTRON bol
3L	14375411	3L_14375411_SNP	G	A	1.507e^-4	0.358	SYNONYMOUS_CODING CG43120
3R	22877107	3R_22877107_SNP	G	A	1.509e^-4	0.358	DOWNSTREAM TwdlT INTRON RYa-R
3L	9006556	3L_9006556_SNP	T	C	1.512e^-4	0.358	NON_SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18569704	3L_18569704_SNP	A	G	1.512e^-4	0.358	DOWNSTREAM AstC-R1 INTERGENIC
X	16722880	X_16722880_SNP	C	T	1.512e^-4	0.358	UPSTREAM CG13004 INTRON CG13004
3R	728922	3R_728922_SNP	C	G	1.516e^-4	0.359	INTERGENIC
3L	10346674	3L_10346674_SNP	A	T	1.525e^-4	0.36	INTRON CR44327
X	11843554	X_11843554_DEL	AATTAA	A	1.530e^-4	0.36	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21125146	3R_21125146_SNP	T	G	1.532e^-4	0.36	NON_SYNONYMOUS_CODING CG31288
3R	10313552	3R_10313552_SNP	T	C	1.533e^-4	0.36	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18625581	3L_18625581_SNP	A	T	1.534e^-4	0.36	INTRON MYPT-75D
X	15540648	X_15540648_SNP	G	A	1.534e^-4	0.36	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8086475	2R_8086475_INS	A	ATTC	1.535e^-4	0.36	UPSTREAM CG8858 DOWNSTREAM RpS11 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7890656	3L_7890656_SNP	G	A	1.537e^-4	0.36	SYNONYMOUS_CODING pbl
2R	8099006	2R_8099006_SNP	G	T	1.539e^-4	0.36	UPSTREAM Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20521476	2L_20521476_INS	A	ACA	1.540e^-4	0.36	INTERGENIC
3R	26674162	3R_26674162_SNP	C	G	1.544e^-4	0.36	INTERGENIC	regulatory region REDfly_CRMs
2R	8115935	2R_8115935_SNP	A	C	1.544e^-4	0.36	INTRON CG8854
2L	12232720	2L_12232720_SNP	A	G	1.548e^-4	0.36	INTRON aret
2L	19961483	2L_19961483_SNP	G	T	1.550e^-4	0.36	NON_SYNONYMOUS_CODING CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
X	7317284	X_7317284_SNP	C	T	1.552e^-4	0.36	INTERGENIC
2R	8098998	2R_8098998_SNP	T	C	1.555e^-4	0.36	UPSTREAM Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12335113	2L_12335113_DEL	AACA	A	1.556e^-4	0.36	INTERGENIC
2L	12401748	2L_12401748_INS	AA	TCAGCT	1.557e^-4	0.36	UTR_3_PRIME Pkd2
2R	9949237	2R_9949237_SNP	A	T	1.562e^-4	0.361	UTR_3_PRIME Prosap
3L	16020049	3L_16020049_SNP	C	A	1.564e^-4	0.361	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19485057	X_19485057_SNP	A	T	1.566e^-4	0.361	UPSTREAM CG14219 INTERGENIC
3L	5002002	3L_5002002_SNP	G	A	1.567e^-4	0.361	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18459947	3R_18459947_SNP	T	G	1.567e^-4	0.361	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26257523	3R_26257523_SNP	T	C	1.570e^-4	0.361	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7913093	2R_7913093_SNP	C	T	1.576e^-4	0.361	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10351071	2R_10351071_SNP	A	G	1.578e^-4	0.361	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8883304	3L_8883304_SNP	T	A	1.579e^-4	0.361	UTR_3_PRIME dally DOWNSTREAM dally
2R	18360943	2R_18360943_SNP	T	C	1.579e^-4	0.361	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad
2R	7682891	2R_7682891_SNP	A	T	1.584e^-4	0.361	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	14588336	X_14588336_DEL	CGC	C	1.586e^-4	0.361	INTRON NetB
3R	25472205	3R_25472205_SNP	C	G	1.588e^-4	0.361	INTRON Dop1R2	TF binding site mE1_TFBS_inv
3R	16427767	3R_16427767_SNP	A	T	1.589e^-4	0.361	INTRON bon	transposable element FlyBase
3R	26575657	3R_26575657_SNP	A	G	1.589e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18987826	3R_18987826_SNP	A	C	1.595e^-4	0.362	UPSTREAM CG13829 INTERGENIC
3R	10858621	3R_10858621_SNP	C	G	1.601e^-4	0.363	INTERGENIC
3R	22765497	3R_22765497_SNP	G	C	1.612e^-4	0.365	INTRON sda
X	5391191	X_5391191_SNP	C	T	1.613e^-4	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24553011	3R_24553011_SNP	G	T	1.619e^-4	0.365	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10529925	2L_10529925_SNP	C	T	1.619e^-4	0.365	INTRON Lip4
2L	9988522	2L_9988522_DEL	G	TC	1.619e^-4	0.365	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	10970611	3L_10970611_SNP	C	A	1.620e^-4	0.365	DOWNSTREAM CR45745 INTERGENIC
2R	8098997	2R_8098997_SNP	T	A	1.628e^-4	0.366	UPSTREAM Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24655458	3R_24655458_SNP	C	A	1.632e^-4	0.366	INTRON WASp
3R	26257459	3R_26257459_SNP	G	T	1.632e^-4	0.366	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26257474	3R_26257474_SNP	T	C	1.632e^-4	0.366	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14540647	X_14540647_DEL	T	GA	1.643e^-4	0.368	INTRON NetA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22295112	3R_22295112_SNP	G	A	1.646e^-4	0.368	SYNONYMOUS_CODING CG5455 DOWNSTREAM plum
2R	8115932	2R_8115932_SNP	G	C	1.647e^-4	0.368	INTRON CG8854
X	981763	X_981763_SNP	A	G	1.648e^-4	0.368	INTRON CR44779 & 1 other
2R	13325866	2R_13325866_SNP	C	T	1.652e^-4	0.368	INTRON EDTP
2R	11134118	2R_11134118_SNP	G	T	1.654e^-4	0.368	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	26748156	3R_26748156_SNP	C	T	1.663e^-4	0.37	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11007134	X_11007134_SNP	G	A	1.667e^-4	0.37	NON_SYNONYMOUS_CODING CG11122 DOWNSTREAM Hsp60	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10043774	3R_10043774_SNP	G	C	1.681e^-4	0.372	UPSTREAM CG9649 DOWNSTREAM CG31326 INTERGENIC
2L	15102759	2L_15102759_SNP	A	C	1.683e^-4	0.372	INTERGENIC
3R	9774890	3R_9774890_SNP	T	G	1.684e^-4	0.372	UTR_3_PRIME CG31517	TF binding site BDTNP1_TFBS_twi
2L	20136741	2L_20136741_SNP	G	T	1.688e^-4	0.373	INTERGENIC
2L	16414869	2L_16414869_SNP	C	G	1.692e^-4	0.373	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9291957	3L_9291957_SNP	T	C	1.693e^-4	0.373	INTERGENIC
X	7317286	X_7317286_SNP	C	A	1.714e^-4	0.377	INTERGENIC
X	22220256	X_22220256_SNP	T	C	1.716e^-4	0.377	INTERGENIC
2L	15323784	2L_15323784_SNP	G	A	1.732e^-4	0.379	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	7133482	2L_7133482_SNP	A	C	1.732e^-4	0.379	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15144536	2L_15144536_SNP	T	A	1.735e^-4	0.379	INTERGENIC
3R	24528176	3R_24528176_SNP	C	T	1.737e^-4	0.379	INTRON htt
2R	18390635	2R_18390635_SNP	G	T	1.740e^-4	0.379	INTRON px
3L	15423051	3L_15423051_SNP	A	C	1.746e^-4	0.379	INTERGENIC
3R	9124884	3R_9124884_SNP	G	T	1.749e^-4	0.379	NON_SYNONYMOUS_CODING CG8774 START_GAINED CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	10890417	3L_10890417_SNP	C	G	1.750e^-4	0.379	INTRON Aps
3L	10890437	3L_10890437_SNP	A	C	1.750e^-4	0.379	INTRON Aps
3L	10890455	3L_10890455_SNP	A	C	1.750e^-4	0.379	INTRON Aps
3L	10890463	3L_10890463_SNP	C	G	1.750e^-4	0.379	INTRON Aps
3R	22133551	3R_22133551_SNP	C	T	1.751e^-4	0.379	INTERGENIC
3R	22877653	3R_22877653_SNP	A	T	1.754e^-4	0.379	DOWNSTREAM TwdlT INTRON RYa-R
3R	4711166	3R_4711166_SNP	C	T	1.755e^-4	0.379	INTRON pyd
2R	12454020	2R_12454020_SNP	G	A	1.761e^-4	0.379	INTRON CG4945
3L	6600729	3L_6600729_SNP	G	A	1.762e^-4	0.379	SYNONYMOUS_CODING CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25519408	3R_25519408_SNP	A	G	1.763e^-4	0.379	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6346328	3L_6346328_SNP	C	G	1.763e^-4	0.379	UPSTREAM CG13300 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	14697258	3R_14697258_SNP	A	G	1.764e^-4	0.379	INTERGENIC
3L	8703965	3L_8703965_SNP	C	A	1.765e^-4	0.379	INTERGENIC	regulatory region REDfly_CRMs
3R	7014812	3R_7014812_SNP	C	G	1.766e^-4	0.379	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19203280	3R_19203280_SNP	A	G	1.767e^-4	0.379	UTR_3_PRIME CG4393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22051415	X_22051415_SNP	A	C	1.779e^-4	0.381	INTERGENIC
X	1426471	X_1426471_SNP	T	C	1.784e^-4	0.381	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	9303873	2R_9303873_SNP	T	G	1.785e^-4	0.381	INTRON CG42321
3R	25125708	3R_25125708_DEL	T	TT	1.792e^-4	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	8904744	3L_8904744_SNP	C	T	1.796e^-4	0.382	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UPSTREAM Tsp66E
3R	11978668	3R_11978668_SNP	A	T	1.797e^-4	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21819558	3R_21819558_SNP	C	A	1.797e^-4	0.382	UTR_3_PRIME Nf1 INTRON Nf1
3L	6303252	3L_6303252_SNP	G	A	1.807e^-4	0.384	INTERGENIC
X	13630353	X_13630353_SNP	G	T	1.810e^-4	0.384	UPSTREAM g DOWNSTREAM Grip91 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8023738	3L_8023738_SNP	A	C	1.811e^-4	0.384	INTRON nmo
3L	13141207	3L_13141207_SNP	G	A	1.815e^-4	0.384	INTERGENIC
3R	11942110	3R_11942110_SNP	T	C	1.819e^-4	0.384	UTR_5_PRIME Sb
3L	16877320	3L_16877320_SNP	T	A	1.821e^-4	0.384	INTRON Lmpt
2R	12873785	2R_12873785_SNP	T	A	1.824e^-4	0.384	INTRON Cbp53E
2R	12707720	2R_12707720_SNP	T	A	1.825e^-4	0.384	UPSTREAM CR43417 INTERGENIC
2R	19201869	2R_19201869_SNP	G	T	1.825e^-4	0.384	UPSTREAM HP1Lcsd INTERGENIC
3R	9791490	3R_9791490_SNP	T	G	1.830e^-4	0.384	SYNONYMOUS_CODING Orc2
X	12385102	X_12385102_SNP	C	T	1.830e^-4	0.384	NON_SYNONYMOUS_CODING Lsp1alpha
3R	24705501	3R_24705501_SNP	C	T	1.832e^-4	0.384	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22082905	3R_22082905_SNP	T	A	1.836e^-4	0.385	INTRON Ald	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25519270	3R_25519270_SNP	C	G	1.838e^-4	0.385	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1270408	X_1270408_INS	T	TTTT	1.847e^-4	0.385	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19162112	X_19162112_SNP	C	T	1.848e^-4	0.385	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15980716	2R_15980716_SNP	A	T	1.849e^-4	0.385	INTERGENIC	TF binding site mE1_TFBS_cad
X	14872113	X_14872113_SNP	T	A	1.852e^-4	0.385	INTRON eag
3L	6345868	3L_6345868_SNP	A	G	1.854e^-4	0.385	UPSTREAM CG13300 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	26572162	3R_26572162_SNP	A	G	1.855e^-4	0.385	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12707536	2R_12707536_SNP	A	T	1.857e^-4	0.385	UPSTREAM CR43417 INTERGENIC
3R	10043801	3R_10043801_SNP	T	A	1.857e^-4	0.385	UPSTREAM CG9649 DOWNSTREAM CG31326 INTERGENIC
3R	22071189	3R_22071189_SNP	A	G	1.859e^-4	0.385	INTRON CR42745
3R	4711017	3R_4711017_DEL	TCATTAAAATGTAACATACA...	T	1.869e^-4	0.387	INTRON pyd
2R	9870918	2R_9870918_SNP	A	G	1.875e^-4	0.387	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	1433538	X_1433538_SNP	G	T	1.875e^-4	0.387	INTRON Mur2B
2L	7176613	2L_7176613_SNP	A	G	1.877e^-4	0.387	INTERGENIC
3R	23755106	3R_23755106_SNP	A	T	1.892e^-4	0.39	UPSTREAM mino INTRON mino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18109779	2L_18109779_SNP	C	T	1.895e^-4	0.39	INTERGENIC
3R	14978745	3R_14978745_SNP	A	G	1.901e^-4	0.39	INTRON CG5835
2L	4040548	2L_4040548_SNP	A	T	1.903e^-4	0.39	INTRON ed
3L	919279	3L_919279_SNP	C	T	1.908e^-4	0.39	INTRON Glut1
3R	23836387	3R_23836387_SNP	C	G	1.908e^-4	0.39	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	3105513	X_3105513_SNP	G	A	1.913e^-4	0.39	INTRON dnc
3R	21436553	3R_21436553_DEL	TTGAGTCGATATT...	T	1.918e^-4	0.39	DOWNSTREAM Npl4 INTERGENIC
3L	20277252	3L_20277252_SNP	G	A	1.918e^-4	0.39	INTRON gogo
3L	15752416	3L_15752416_SNP	G	T	1.921e^-4	0.39	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	7286427	3R_7286427_SNP	T	A	1.921e^-4	0.39	UPSTREAM PGRP-LB INTRON CG17230
3R	19170364	3R_19170364_DEL	AA	A	1.922e^-4	0.39	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10940592	3L_10940592_SNP	A	G	1.922e^-4	0.39	INTERGENIC
2R	18233744	2R_18233744_INS	C	CC	1.923e^-4	0.39	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
3R	23182944	3R_23182944_SNP	A	G	1.924e^-4	0.39	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9737983	2R_9737983_SNP	C	A	1.927e^-4	0.39	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	25892220	3R_25892220_SNP	G	T	1.928e^-4	0.39	INTRON sima
2L	8330588	2L_8330588_SNP	C	A	1.929e^-4	0.39	INTRON CG14275
2L	9748799	2L_9748799_SNP	G	C	1.936e^-4	0.392	SYNONYMOUS_CODING Cyp4e3
3R	26442172	3R_26442172_SNP	G	T	1.948e^-4	0.393	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15108556	X_15108556_SNP	G	A	1.950e^-4	0.393	INTERGENIC
2R	9756735	2R_9756735_SNP	G	A	1.950e^-4	0.393	INTRON shot
2R	18958222	2R_18958222_SNP	C	T	1.960e^-4	0.395	SYNONYMOUS_CODING l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24652806	3R_24652806_SNP	C	T	1.971e^-4	0.396	NON_SYNONYMOUS_CODING WASp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	994897	2L_994897_SNP	T	G	1.972e^-4	0.396	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8126582	3L_8126582_SNP	G	A	1.975e^-4	0.396	SYNONYMOUS_CODING CG7504
3R	11386894	3R_11386894_INS	C	CC	1.976e^-4	0.396	INTERGENIC
2L	7488750	2L_7488750_SNP	T	C	1.980e^-4	0.396	INTRON Ziz
3R	18385770	3R_18385770_SNP	C	T	1.982e^-4	0.396	SYNONYMOUS_CODING CG5278
2R	7962246	2R_7962246_SNP	C	G	1.984e^-4	0.396	INTRON CG8888
X	1067489	X_1067489_DEL	TA	T	1.985e^-4	0.396	UTR_3_PRIME CG11378 DOWNSTREAM CG11378 & 1 other
2R	8092306	2R_8092306_SNP	C	T	1.987e^-4	0.396	INTERGENIC
2L	3973395	2L_3973395_SNP	G	A	1.995e^-4	0.398	INTRON fred
2L	10209773	2L_10209773_SNP	A	G	2.000e^-4	0.398	UPSTREAM CG5731 DOWNSTREAM CG5727 & 1 other EXON CR44845	TF binding site BDTNP1_TFBS_dl
X	10505179	X_10505179_SNP	T	C	2.004e^-4	0.398	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
3L	2466912	3L_2466912_SNP	C	T	2.005e^-4	0.398	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8331400	2L_8331400_SNP	G	C	2.010e^-4	0.399	INTRON CG14275
2L	18347692	2L_18347692_SNP	T	G	2.011e^-4	0.399	INTRON Fas3
2R	16081588	2R_16081588_SNP	A	C	2.040e^-4	0.404	INTERGENIC
X	1220002	X_1220002_SNP	G	A	2.041e^-4	0.404	SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
2R	8084943	2R_8084943_SNP	T	C	2.045e^-4	0.404	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15129715	2L_15129715_SNP	T	A	2.047e^-4	0.404	DOWNSTREAM CR44706 EXON CR43854
3R	22858885	3R_22858885_INS	TG	T	2.050e^-4	0.404	INTRON RYa-R
3R	23025634	3R_23025634_SNP	G	T	2.055e^-4	0.404	INTERGENIC	regulatory region REDfly_CRMs
2L	20034213	2L_20034213_SNP	T	C	2.055e^-4	0.404	INTRON sNPF
3R	20980474	3R_20980474_SNP	G	C	2.055e^-4	0.404	INTERGENIC
3R	8215231	3R_8215231_SNP	A	T	2.056e^-4	0.404	SYNONYMOUS_CODING CG34402 UTR_5_PRIME CG34402 DOWNSTREAM CG33098
X	22212463	X_22212463_SNP	G	A	2.062e^-4	0.404	SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	8606296	3L_8606296_INS	A	ACTTCA	2.063e^-4	0.404	INTRON CG6282
X	16054824	X_16054824_SNP	C	T	2.068e^-4	0.405	INTERGENIC
2R	8326829	2R_8326829_SNP	A	G	2.073e^-4	0.405	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20466363	3R_20466363_SNP	T	C	2.079e^-4	0.405	INTRON puf
3L	7951397	3L_7951397_SNP	C	A	2.080e^-4	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12727690	2L_12727690_SNP	T	A	2.082e^-4	0.405	INTRON MRP
3R	9824490	3R_9824490_SNP	G	C	2.082e^-4	0.405	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26572219	3R_26572219_SNP	C	A	2.083e^-4	0.405	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
X	14399809	X_14399809_SNP	A	C	2.088e^-4	0.406	INTERGENIC
3R	24653174	3R_24653174_SNP	T	A	2.091e^-4	0.406	UPSTREAM WASp INTRON WASp
3R	26008351	3R_26008351_SNP	C	A	2.099e^-4	0.407	INTERGENIC
3R	14268179	3R_14268179_SNP	A	G	2.102e^-4	0.407	INTRON fru
3R	26575438	3R_26575438_SNP	G	A	2.102e^-4	0.407	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18546887	3L_18546887_SNP	C	A	2.103e^-4	0.407	INTERGENIC
2R	9404965	2R_9404965_SNP	C	T	2.110e^-4	0.407	UTR_3_PRIME Vmat DOWNSTREAM Vmat & 1 other
X	12369541	X_12369541_SNP	A	C	2.111e^-4	0.407	INTRON CG42258
3L	4858682	3L_4858682_SNP	G	A	2.113e^-4	0.407	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	723883	3L_723883_SNP	T	G	2.115e^-4	0.407	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16054789	X_16054789_SNP	T	G	2.116e^-4	0.407	INTERGENIC
X	11626266	X_11626266_SNP	G	A	2.116e^-4	0.407	UPSTREAM inaF-C INTRON CG15221 & 2 others	TF binding site mE1_TFBS_cad
2L	12176550	2L_12176550_SNP	T	A	2.120e^-4	0.407	INTRON aret & 1 other
3R	21089165	3R_21089165_SNP	G	A	2.121e^-4	0.407	SYNONYMOUS_CODING Aats-gln UPSTREAM CG10425 DOWNSTREAM CG11858	TF binding site mE1_TFBS_chinmo
2R	6119830	2R_6119830_SNP	C	T	2.123e^-4	0.407	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9324960	3L_9324960_SNP	A	T	2.124e^-4	0.407	INTERGENIC
2L	8330585	2L_8330585_SNP	A	C	2.129e^-4	0.407	INTRON CG14275
3L	9324957	3L_9324957_SNP	A	G	2.135e^-4	0.408	INTERGENIC
3L	12411499	3L_12411499_SNP	C	G	2.138e^-4	0.408	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	7818687	2R_7818687_SNP	C	T	2.139e^-4	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21032175	3R_21032175_SNP	T	C	2.146e^-4	0.408	INTRON CG13654 & 1 other
3L	3638828	3L_3638828_SNP	A	C	2.146e^-4	0.408	INTRON dar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26175421	3R_26175421_INS	A	AT	2.147e^-4	0.408	INTRON hdc
2L	1723638	2L_1723638_SNP	A	C	2.152e^-4	0.408	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22072970	3R_22072970_SNP	G	C	2.154e^-4	0.408	INTRON CR42745
3L	9088045	3L_9088045_SNP	C	T	2.155e^-4	0.408	DOWNSTREAM CG32032 INTERGENIC
3L	10900277	3L_10900277_SNP	T	C	2.160e^-4	0.409	INTERGENIC
2L	18347625	2L_18347625_SNP	A	G	2.164e^-4	0.409	INTRON Fas3

mn_Surv_Azinpho_0_25 phenotype

Covariates

QQplot

Manhattan plot

GWAS results 20335 significant hits at p-value < 0.01. The 1000 top results are displayed in this table.