DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.855e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.001511

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.1403	0.0765
In_2R_NS	8.2249	0.0164

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2222 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8072884	2R_8072884_INS [dm3] 2R_12185379_INS [dm6]	G	GAGTTACGGGTGCCTCCGTT...	1.204e^-10	2.259e^-4	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
2R	8032968	2R_8032968_DEL [dm3] 2R_12145463_DEL [dm6]	AA	A	1.576e^-7	0.148	UPSTREAM CG13178 & 1 other DOWNSTREAM CG8878 INTERGENIC
2R	8038377	2R_8038377_SNP [dm3] 2R_12150872_SNP [dm6]	T	G	3.625e^-7	0.178	UPSTREAM CG8878 INTRON Hen1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8038268	2R_8038268_SNP [dm3] 2R_12150763_SNP [dm6]	A	T	4.502e^-7	0.178	UPSTREAM CG8878 INTRON Hen1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8033423	2R_8033423_SNP [dm3] 2R_12145918_SNP [dm6]	T	C	4.755e^-7	0.178	SYNONYMOUS_CODING Hen1 DOWNSTREAM CG8878
2R	8033261	2R_8033261_SNP [dm3] 2R_12145756_SNP [dm6]	G	C	5.716e^-7	0.179	UTR_5_PRIME Hen1 DOWNSTREAM CG8878
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	1.019e^-6	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8070658	2R_8070658_SNP [dm3] 2R_12183153_SNP [dm6]	T	G	1.133e^-6	0.265	NON_SYNONYMOUS_CODING CG13175 UTR_5_PRIME CG33964 DOWNSTREAM wash & 1 other	TF binding site mE1_TFBS_sens
2R	8031335	2R_8031335_SNP [dm3] 2R_12143830_SNP [dm6]	C	T	1.272e^-6	0.265	SYNONYMOUS_CODING CG13178 DOWNSTREAM CG8378	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18328261	3L_18328261_SNP [dm3] 3L_18335161_SNP [dm6]	A	G	1.633e^-6	0.306	INTERGENIC
3L	10458818	3L_10458818_SNP [dm3] 3L_10465718_SNP [dm6]	C	T	3.539e^-6	0.492	UPSTREAM S-Lap3 INTRON S-Lap3
2R	8061931	2R_8061931_SNP [dm3] 2R_12174426_SNP [dm6]	C	A	3.763e^-6	0.492	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18328201	3L_18328201_INS [dm3] 3L_18335101_INS [dm6]	A	ATAGTTA	4.021e^-6	0.492	INTERGENIC
2L	12250734	2L_12250734_SNP [dm3] 2L_12250734_SNP [dm6]	C	T	4.480e^-6	0.492	INTRON aret
3R	25518937	3R_25518937_SNP [dm3] 3R_29693215_SNP [dm6]	T	G	4.546e^-6	0.492	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9724685	2R_9724685_SNP [dm3] 2R_13837180_SNP [dm6]	A	C	4.801e^-6	0.492	INTRON CG6347
2R	9724686	2R_9724686_SNP [dm3] 2R_13837181_SNP [dm6]	T	G	4.801e^-6	0.492	INTRON CG6347
2L	18307098	2L_18307098_SNP [dm3] 2L_18307098_SNP [dm6]	A	G	4.998e^-6	0.492	DOWNSTREAM CR43353 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25518499	3R_25518499_SNP [dm3] 3R_29692777_SNP [dm6]	C	T	5.319e^-6	0.492	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18874973	X_18874973_SNP [dm3] X_18980940_SNP [dm6]	A	T	5.470e^-6	0.492	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12176550	2L_12176550_SNP [dm3] 2L_12176550_SNP [dm6]	T	A	5.807e^-6	0.492	INTRON aret & 1 other
2R	8059576	2R_8059576_SNP [dm3] 2R_12172071_SNP [dm6]	C	T	6.239e^-6	0.492	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	25519022	3R_25519022_SNP [dm3] 3R_29693300_SNP [dm6]	T	A	6.290e^-6	0.492	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8060142	2R_8060142_SNP [dm3] 2R_12172637_SNP [dm6]	G	A	6.293e^-6	0.492	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8068113	2R_8068113_SNP [dm3] 2R_12180608_SNP [dm6]	T	G	6.740e^-6	0.496	UPSTREAM wash & 1 other DOWNSTREAM CR45264 INTRON wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9124849	3R_9124849_SNP [dm3] 3R_13299127_SNP [dm6]	C	A	7.058e^-6	0.496	SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8060123	2R_8060123_SNP [dm3] 2R_12172618_SNP [dm6]	A	G	7.142e^-6	0.496	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11547442	3L_11547442_SNP [dm3] 3L_11554342_SNP [dm6]	G	A	7.599e^-6	0.504	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18908308	2L_18908308_SNP [dm3] 2L_18908308_SNP [dm6]	T	G	7.798e^-6	0.504	INTERGENIC
3R	25519037	3R_25519037_SNP [dm3] 3R_29693315_SNP [dm6]	G	T	8.833e^-6	0.533	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25519039	3R_25519039_DEL [dm3] 3R_29693317_DEL [dm6]	AAAAC	A	9.097e^-6	0.533	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	15540673	X_15540673_INS [dm3] X_15646640_INS [dm6]	A	ATCAGTTGACCATA...	9.358e^-6	0.533	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	11131310	3L_11131310_SNP [dm3] 3L_11138210_SNP [dm6]	A	T	9.453e^-6	0.533	INTRON CG32082
2R	9724860	2R_9724860_SNP [dm3] 2R_13837355_SNP [dm6]	A	G	9.674e^-6	0.533	INTRON CG6347
2R	4539947	2R_4539947_SNP [dm3] 2R_8652442_SNP [dm6]	C	T	1.008e^-5	0.533	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	25519047	3R_25519047_SNP [dm3] 3R_29693325_SNP [dm6]	T	C	1.074e^-5	0.533	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	594165	3R_594165_SNP [dm3] 3R_4768443_SNP [dm6]	C	G	1.111e^-5	0.533	UTR_5_PRIME CG44098 INTRON atms & 1 other
2R	9724649	2R_9724649_SNP [dm3] 2R_13837144_SNP [dm6]	G	T	1.143e^-5	0.533	INTRON CG6347
2L	18347692	2L_18347692_SNP [dm3] 2L_18347692_SNP [dm6]	T	G	1.171e^-5	0.533	INTRON Fas3
X	14678799	X_14678799_DEL [dm3] X_14784766_DEL [dm6]	TTCCTTACATGTAT...	CG	1.176e^-5	0.533	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3L	18328060	3L_18328060_INS [dm3] 3L_18334960_INS [dm6]	A	AA	1.194e^-5	0.533	INTERGENIC
3R	20842014	3R_20842014_SNP [dm3] 3R_25016292_SNP [dm6]	T	C	1.214e^-5	0.533	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad
2L	9988522	2L_9988522_DEL [dm3] 2L_9988522_DEL [dm6]	TC	G	1.222e^-5	0.533	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15110192	2L_15110192_SNP [dm3] 2L_15110192_SNP [dm6]	A	G	1.329e^-5	0.555	NON_SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14978745	3R_14978745_SNP [dm3] 3R_19153023_SNP [dm6]	A	G	1.383e^-5	0.555	INTRON CG5835
3L	18328053	3L_18328053_SNP [dm3] 3L_18334953_SNP [dm6]	G	A	1.391e^-5	0.555	INTERGENIC
X	12591534	X_12591534_SNP [dm3] X_12697501_SNP [dm6]	A	C	1.392e^-5	0.555	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7954428	2L_7954428_SNP [dm3] 2L_7954428_SNP [dm6]	T	G	1.498e^-5	0.579	INTRON Snoo
2L	18287630	2L_18287630_SNP [dm3] 2L_18287630_SNP [dm6]	G	A	1.512e^-5	0.579	INTERGENIC
2L	12019822	2L_12019822_SNP [dm3] 2L_12019822_SNP [dm6]	A	G	1.584e^-5	0.593	NON_SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8490413	2R_8490413_SNP [dm3] 2R_12602908_SNP [dm6]	G	C	1.685e^-5	0.593	INTRON Amph
X	13869032	X_13869032_SNP [dm3] X_13974999_SNP [dm6]	A	G	1.698e^-5	0.593	INTRON mamo
2L	18347703	2L_18347703_SNP [dm3] 2L_18347703_SNP [dm6]	A	T	1.738e^-5	0.593	INTRON Fas3
2L	12260604	2L_12260604_SNP [dm3] 2L_12260604_SNP [dm6]	T	C	1.809e^-5	0.593	INTRON aret
2L	18347625	2L_18347625_SNP [dm3] 2L_18347625_SNP [dm6]	A	G	1.819e^-5	0.593	INTRON Fas3
3R	25518972	3R_25518972_SNP [dm3] 3R_29693250_SNP [dm6]	A	G	1.849e^-5	0.593	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12357469	3L_12357469_SNP [dm3] 3L_12364369_SNP [dm6]	C	T	1.878e^-5	0.593	INTERGENIC
X	2943298	X_2943298_SNP [dm3] X_3049265_SNP [dm6]	A	G	1.888e^-5	0.593	INTRON kirre
3R	25517329	3R_25517329_SNP [dm3] 3R_29691607_SNP [dm6]	G	A	1.899e^-5	0.593	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24457975	3R_24457975_SNP [dm3] 3R_28632253_SNP [dm6]	G	A	1.903e^-5	0.593	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24690905	3R_24690905_SNP [dm3] 3R_28865183_SNP [dm6]	C	T	1.952e^-5	0.593	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
2R	9724799	2R_9724799_SNP [dm3] 2R_13837294_SNP [dm6]	T	A	1.961e^-5	0.593	INTRON CG6347
2R	8061873	2R_8061873_SNP [dm3] 2R_12174368_SNP [dm6]	T	G	2.018e^-5	0.597	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9458068	X_9458068_SNP [dm3] X_9564035_SNP [dm6]	A	T	2.037e^-5	0.597	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7438827	3L_7438827_SNP [dm3] 3L_7445727_SNP [dm6]	T	A	2.068e^-5	0.597	SYNONYMOUS_CODING CG42458
3L	11547446	3L_11547446_SNP [dm3] 3L_11554346_SNP [dm6]	A	G	2.103e^-5	0.598	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15540706	X_15540706_SNP [dm3] X_15646673_SNP [dm6]	G	A	2.164e^-5	0.606	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	8060810	2R_8060810_SNP [dm3] 2R_12173305_SNP [dm6]	A	G	2.210e^-5	0.61	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13871363	3R_13871363_INS [dm3] 3R_18045641_INS [dm6]	G	GTGCTTAAAAG...	2.246e^-5	0.61	UTR_3_PRIME htl
2L	3548588	2L_3548588_SNP [dm3] 2L_3548588_SNP [dm6]	T	A	2.306e^-5	0.616	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13646641	2L_13646641_SNP [dm3] 2L_13646641_SNP [dm6]	T	C	2.331e^-5	0.616	INTERGENIC
X	19485055	X_19485055_SNP [dm3] X_19591022_SNP [dm6]	G	C	2.403e^-5	0.618	UPSTREAM CG14219 INTERGENIC
2L	18945538	2L_18945538_DEL [dm3] 2L_18945538_DEL [dm6]	AGT	A	2.405e^-5	0.618	UPSTREAM CR44740 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA transposable element FlyBase
3R	24101087	3R_24101087_SNP [dm3] 3R_28275365_SNP [dm6]	A	G	2.512e^-5	0.635	INTERGENIC
2L	18347825	2L_18347825_DEL [dm3] 2L_18347825_DEL [dm6]	AC	T	2.540e^-5	0.635	INTRON Fas3
X	21384322	X_21384322_SNP [dm3] X_21513295_SNP [dm6]	T	A	2.640e^-5	0.649	INTRON CR45082
2L	12250579	2L_12250579_SNP [dm3] 2L_12250579_SNP [dm6]	T	A	2.665e^-5	0.649	INTRON aret
2L	6733764	2L_6733764_SNP [dm3] 2L_6733764_SNP [dm6]	G	C	2.699e^-5	0.649	SYNONYMOUS_CODING TTLL3B DOWNSTREAM Liprin-alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18347648	2L_18347648_SNP [dm3] 2L_18347648_SNP [dm6]	T	C	2.756e^-5	0.652	INTRON Fas3
3R	15194604	3R_15194604_SNP [dm3] 3R_19368882_SNP [dm6]	G	T	2.781e^-5	0.652	DOWNSTREAM Ino80 INTERGENIC
2L	16437330	2L_16437330_SNP [dm3] 2L_16437330_SNP [dm6]	G	A	2.830e^-5	0.655	INTRON CG5888
2L	18347633	2L_18347633_SNP [dm3] 2L_18347633_SNP [dm6]	A	G	2.979e^-5	0.681	INTRON Fas3
2L	9445602	2L_9445602_SNP [dm3] 2L_9445602_SNP [dm6]	A	C	3.067e^-5	0.681	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	981763	X_981763_SNP [dm3] X_1087730_SNP [dm6]	A	G	3.100e^-5	0.681	INTRON CR44779 & 1 other
2R	4539949	2R_4539949_SNP [dm3] 2R_8652444_SNP [dm6]	A	T	3.117e^-5	0.681	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	720725	3R_720725_SNP [dm3] 3R_4895003_SNP [dm6]	G	C	3.177e^-5	0.681	INTERGENIC
2L	11357425	2L_11357425_SNP [dm3] 2L_11357425_SNP [dm6]	A	G	3.181e^-5	0.681	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	9445497	2L_9445497_SNP [dm3] 2L_9445497_SNP [dm6]	C	T	3.194e^-5	0.681	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12357316	3L_12357316_SNP [dm3] 3L_12364216_SNP [dm6]	A	C	3.237e^-5	0.682	INTERGENIC
2L	838455	2L_838455_DEL [dm3] 2L_838455_DEL [dm6]	AGATAGA	A	3.335e^-5	0.684	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16437332	2L_16437332_SNP [dm3] 2L_16437332_SNP [dm6]	T	G	3.385e^-5	0.684	INTRON CG5888
2L	12029797	2L_12029797_SNP [dm3] 2L_12029797_SNP [dm6]	A	G	3.387e^-5	0.684	INTRON dmGlut	TF binding site mE1_TFBS_cad
2L	14405426	2L_14405426_SNP [dm3] 2L_14405426_SNP [dm6]	T	A	3.408e^-5	0.684	INTRON elB	TF binding site mE1_TFBS_cad
2R	8062180	2R_8062180_SNP [dm3] 2R_12174675_SNP [dm6]	C	T	3.440e^-5	0.684	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15903200	2L_15903200_SNP [dm3] 2L_15903200_SNP [dm6]	G	A	3.519e^-5	0.684	UPSTREAM CG31821 INTERGENIC
3L	15222133	3L_15222133_SNP [dm3] 3L_15229033_SNP [dm6]	T	A	3.525e^-5	0.684	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18310716	2L_18310716_SNP [dm3] 2L_18310716_SNP [dm6]	C	T	3.540e^-5	0.684	UPSTREAM CR45721 DOWNSTREAM CR44694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8020767	2R_8020767_SNP [dm3] 2R_12133262_SNP [dm6]	C	T	3.615e^-5	0.691	INTERGENIC
2R	8468927	2R_8468927_SNP [dm3] 2R_12581422_SNP [dm6]	T	C	3.649e^-5	0.691	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20941733	2L_20941733_DEL [dm3] 2L_20941733_DEL [dm6]	TAACAAG	T	3.775e^-5	0.695	INTERGENIC
2R	10351071	2R_10351071_SNP [dm3] 2R_14463566_SNP [dm6]	A	G	3.800e^-5	0.695	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	695754	3R_695754_SNP [dm3] 3R_4870032_SNP [dm6]	G	A	3.818e^-5	0.695	DOWNSTREAM opa INTERGENIC
2R	8060092	2R_8060092_SNP [dm3] 2R_12172587_SNP [dm6]	A	G	3.831e^-5	0.695	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18313236	2L_18313236_SNP [dm3] 2L_18313236_SNP [dm6]	A	C	3.856e^-5	0.695	DOWNSTREAM CR44489 INTERGENIC
3R	713017	3R_713017_SNP [dm3] 3R_4887295_SNP [dm6]	A	C	3.924e^-5	0.698	INTERGENIC
3R	13011197	3R_13011197_SNP [dm3] 3R_17185475_SNP [dm6]	T	A	3.968e^-5	0.698	INTRON Mur89F
X	20425788	X_20425788_SNP [dm3] X_20554761_SNP [dm6]	G	C	3.983e^-5	0.698	INTRON RunxB
2R	11542104	2R_11542104_SNP [dm3] 2R_15654599_SNP [dm6]	G	A	4.106e^-5	0.713	INTRON CG42524
3L	12357338	3L_12357338_SNP [dm3] 3L_12364238_SNP [dm6]	A	T	4.310e^-5	0.728	INTERGENIC
3R	695747	3R_695747_SNP [dm3] 3R_4870025_SNP [dm6]	T	A	4.339e^-5	0.728	DOWNSTREAM opa INTERGENIC
2R	9724785	2R_9724785_SNP [dm3] 2R_13837280_SNP [dm6]	C	T	4.357e^-5	0.728	INTRON CG6347
2R	9724791	2R_9724791_SNP [dm3] 2R_13837286_SNP [dm6]	C	T	4.357e^-5	0.728	INTRON CG6347
3L	12357296	3L_12357296_DEL [dm3] 3L_12364196_DEL [dm6]	GGACAC	G	4.424e^-5	0.728	INTERGENIC
3L	14367878	3L_14367878_SNP [dm3] 3L_14374778_SNP [dm6]	A	C	4.427e^-5	0.728	INTERGENIC
3R	20978297	3R_20978297_SNP [dm3] 3R_25152575_SNP [dm6]	C	T	4.472e^-5	0.728	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20388047	2R_20388047_SNP [dm3] 2R_24500524_SNP [dm6]	G	A	4.503e^-5	0.728	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
X	15540648	X_15540648_SNP [dm3] X_15646615_SNP [dm6]	G	A	4.600e^-5	0.737	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12357421	3L_12357421_SNP [dm3] 3L_12364321_SNP [dm6]	G	A	4.717e^-5	0.75	INTERGENIC
2L	16437325	2L_16437325_SNP [dm3] 2L_16437325_SNP [dm6]	A	G	4.828e^-5	0.759	INTRON CG5888
3R	21125548	3R_21125548_SNP [dm3] 3R_25299826_SNP [dm6]	T	G	4.894e^-5	0.759	UPSTREAM CG31288 INTERGENIC
3R	25909173	3R_25909173_DEL [dm3] 3R_30083451_DEL [dm6]	GAG	G	4.922e^-5	0.759	INTRON sima
3R	24690890	3R_24690890_SNP [dm3] 3R_28865168_SNP [dm6]	A	G	4.979e^-5	0.759	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
X	16154020	X_16154020_SNP [dm3] X_16259987_SNP [dm6]	T	A	5.013e^-5	0.759	INTERGENIC
X	13809929	X_13809929_SNP [dm3] X_13915896_SNP [dm6]	A	T	5.073e^-5	0.759	INTRON mamo
2L	1918993	2L_1918993_SNP [dm3] 2L_1918993_SNP [dm6]	T	C	5.100e^-5	0.759	INTRON CG7337
2L	18347657	2L_18347657_SNP [dm3] 2L_18347657_SNP [dm6]	C	G	5.114e^-5	0.759	INTRON Fas3
3L	12357323	3L_12357323_SNP [dm3] 3L_12364223_SNP [dm6]	G	T	5.150e^-5	0.759	INTERGENIC
2L	18347674	2L_18347674_SNP [dm3] 2L_18347674_SNP [dm6]	A	C	5.203e^-5	0.759	INTRON Fas3
2R	8068499	2R_8068499_SNP [dm3] 2R_12180994_SNP [dm6]	G	A	5.231e^-5	0.759	SYNONYMOUS_CODING wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21436553	3R_21436553_DEL [dm3] 3R_25610831_DEL [dm6]	TTGAGTCGATATT...	T	5.269e^-5	0.759	DOWNSTREAM Npl4 INTERGENIC
2L	16000019	2L_16000019_SNP [dm3] 2L_16000019_SNP [dm6]	T	C	5.302e^-5	0.759	UPSTREAM beat-Ic INTERGENIC
2L	5976572	2L_5976572_SNP [dm3] 2L_5976572_SNP [dm6]	A	G	5.356e^-5	0.761	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18347573	2L_18347573_SNP [dm3] 2L_18347573_SNP [dm6]	G	C	5.397e^-5	0.761	INTRON Fas3
3R	13553525	3R_13553525_SNP [dm3] 3R_17727803_SNP [dm6]	C	A	5.616e^-5	0.767	INTRON Lgr1
2L	18897214	2L_18897214_SNP [dm3] 2L_18897214_SNP [dm6]	A	G	5.641e^-5	0.767	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9850886	2L_9850886_SNP [dm3] 2L_9850886_SNP [dm6]	T	A	5.713e^-5	0.767	INTRON nAChRalpha6
X	12385102	X_12385102_SNP [dm3] X_12491069_SNP [dm6]	C	T	5.733e^-5	0.767	NON_SYNONYMOUS_CODING Lsp1alpha
X	8967520	X_8967520_SNP [dm3] X_9073487_SNP [dm6]	G	A	5.781e^-5	0.767	INTRON CG44325
2L	18347659	2L_18347659_SNP [dm3] 2L_18347659_SNP [dm6]	C	A	5.945e^-5	0.767	INTRON Fas3
3R	25518883	3R_25518883_SNP [dm3] 3R_29693161_SNP [dm6]	G	A	6.023e^-5	0.767	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19737114	X_19737114_SNP [dm3] X_19843081_SNP [dm6]	C	T	6.058e^-5	0.767	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11226445	2L_11226445_DEL [dm3] 2L_11226445_DEL [dm6]	GGG	G	6.107e^-5	0.767	INTRON ab
X	11600344	X_11600344_SNP [dm3] X_11706311_SNP [dm6]	T	G	6.165e^-5	0.767	DOWNSTREAM FucT6 INTERGENIC
2L	7015600	2L_7015600_SNP [dm3] 2L_7015600_SNP [dm6]	G	A	6.279e^-5	0.767	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5815238	2L_5815238_SNP [dm3] 2L_5815238_SNP [dm6]	T	C	6.296e^-5	0.767	INTERGENIC
2L	7954433	2L_7954433_SNP [dm3] 2L_7954433_SNP [dm6]	T	C	6.352e^-5	0.767	INTRON Snoo
2R	15095539	2R_15095539_SNP [dm3] 2R_19208034_SNP [dm6]	G	T	6.431e^-5	0.767	INTRON hppy
3L	18277929	3L_18277929_SNP [dm3] 3L_18284829_SNP [dm6]	T	A	6.440e^-5	0.767	INTERGENIC
2L	18347525	2L_18347525_SNP [dm3] 2L_18347525_SNP [dm6]	C	T	6.471e^-5	0.767	INTRON Fas3
X	13760677	X_13760677_SNP [dm3] X_13866644_SNP [dm6]	T	A	6.500e^-5	0.767	UTR_3_PRIME mamo INTRON mamo
X	20145141	X_20145141_SNP [dm3] X_20274115_SNP [dm6]	C	T	6.535e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8116598	2R_8116598_SNP [dm3] 2R_12229093_SNP [dm6]	G	A	6.551e^-5	0.767	INTRON CG8854
2L	7953836	2L_7953836_SNP [dm3] 2L_7953836_SNP [dm6]	G	T	6.566e^-5	0.767	INTRON Snoo
3R	21128897	3R_21128897_SNP [dm3] 3R_25303175_SNP [dm6]	C	T	6.571e^-5	0.767	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
3L	7549329	3L_7549329_SNP [dm3] 3L_7556229_SNP [dm6]	C	T	6.577e^-5	0.767	NON_SYNONYMOUS_CODING CG14837
2L	19924440	2L_19924440_SNP [dm3] 2L_19924440_SNP [dm6]	T	A	6.630e^-5	0.767	DOWNSTREAM CR43827 INTRON sick
3R	537605	3R_537605_SNP [dm3] 3R_4711883_SNP [dm6]	A	C	6.654e^-5	0.767	UTR_3_PRIME CG43427 DOWNSTREAM CG9769	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	15251885	2R_15251885_SNP [dm3] 2R_19364380_SNP [dm6]	C	T	6.655e^-5	0.767	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad
2R	18360729	2R_18360729_SNP [dm3] 2R_22473224_SNP [dm6]	T	C	6.695e^-5	0.767	DOWNSTREAM CG45062 & 1 other INTRON CG45062
X	15192027	X_15192027_SNP [dm3] X_15297994_SNP [dm6]	A	G	6.698e^-5	0.767	DOWNSTREAM CG5877 INTRON CR44429 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7549438	3L_7549438_SNP [dm3] 3L_7556338_SNP [dm6]	T	C	6.733e^-5	0.767	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
3L	12357220	3L_12357220_SNP [dm3] 3L_12364120_SNP [dm6]	T	C	6.738e^-5	0.767	INTERGENIC
2L	10068421	2L_10068421_SNP [dm3] 2L_10068421_SNP [dm6]	G	C	6.753e^-5	0.767	INTRON CG44153
2R	10503269	2R_10503269_SNP [dm3] 2R_14615764_SNP [dm6]	A	G	6.877e^-5	0.767	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14172478	2L_14172478_SNP [dm3] 2L_14172478_SNP [dm6]	T	G	6.880e^-5	0.767	INTRON CG43333
3L	12357327	3L_12357327_SNP [dm3] 3L_12364227_SNP [dm6]	A	T	6.895e^-5	0.767	INTERGENIC
3R	720665	3R_720665_SNP [dm3] 3R_4894943_SNP [dm6]	T	C	6.900e^-5	0.767	INTERGENIC
3R	24513131	3R_24513131_SNP [dm3] 3R_28687409_SNP [dm6]	G	T	6.977e^-5	0.767	INTRON CG9990	TF binding site mE1_TFBS_eve
3L	7004626	3L_7004626_SNP [dm3] 3L_7011526_SNP [dm6]	C	T	7.005e^-5	0.767	INTRON Mp
X	14541270	X_14541270_SNP [dm3] X_14647237_SNP [dm6]	G	C	7.014e^-5	0.767	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	8031124	2R_8031124_SNP [dm3] 2R_12143619_SNP [dm6]	T	A	7.027e^-5	0.767	NON_SYNONYMOUS_CODING CG13178 DOWNSTREAM CG8378	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8026331	2R_8026331_SNP [dm3] 2R_12138826_SNP [dm6]	T	C	7.099e^-5	0.767	UTR_5_PRIME CG18343 DOWNSTREAM skpB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	14405881	2L_14405881_SNP [dm3] 2L_14405881_SNP [dm6]	T	C	7.111e^-5	0.767	INTRON elB
2L	9596341	2L_9596341_SNP [dm3] 2L_9596341_SNP [dm6]	G	T	7.252e^-5	0.767	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	25519408	3R_25519408_SNP [dm3] 3R_29693686_SNP [dm6]	G	A	7.264e^-5	0.767	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18277489	2L_18277489_SNP [dm3] 2L_18277489_SNP [dm6]	A	G	7.286e^-5	0.767	INTERGENIC
3L	18277922	3L_18277922_SNP [dm3] 3L_18284822_SNP [dm6]	T	A	7.436e^-5	0.767	INTERGENIC
2L	12082917	2L_12082917_SNP [dm3] 2L_12082917_SNP [dm6]	C	T	7.457e^-5	0.767	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7953695	2L_7953695_SNP [dm3] 2L_7953695_SNP [dm6]	C	T	7.458e^-5	0.767	INTRON Snoo
3L	11131340	3L_11131340_SNP [dm3] 3L_11138240_SNP [dm6]	A	C	7.479e^-5	0.767	INTRON CG32082
X	7137773	X_7137773_DEL [dm3] X_7243740_DEL [dm6]	TAGTGACCACATAGC...	T	7.526e^-5	0.767	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	9430419	3L_9430419_SNP [dm3] 3L_9437319_SNP [dm6]	C	T	7.545e^-5	0.767	SYNONYMOUS_CODING MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7955631	2L_7955631_SNP [dm3] 2L_7955631_SNP [dm6]	G	A	7.565e^-5	0.767	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	7955633	2L_7955633_SNP [dm3] 2L_7955633_SNP [dm6]	T	A	7.565e^-5	0.767	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	7963022	2L_7963022_SNP [dm3] 2L_7963022_SNP [dm6]	T	C	7.627e^-5	0.767	INTRON Snoo
2R	11134118	2R_11134118_SNP [dm3] 2R_15246613_SNP [dm6]	G	T	7.657e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	15146420	3L_15146420_INS [dm3] 3L_15153320_INS [dm6]	A	AA	7.712e^-5	0.767	UTR_3_PRIME FucTA DOWNSTREAM Msh6
X	2944116	X_2944116_SNP [dm3] X_3050083_SNP [dm6]	C	T	7.728e^-5	0.767	INTRON kirre
2L	6733506	2L_6733506_SNP [dm3] 2L_6733506_SNP [dm6]	C	T	7.759e^-5	0.767	SYNONYMOUS_CODING TTLL3B DOWNSTREAM Liprin-alpha	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	24678352	3R_24678352_SNP [dm3] 3R_28852630_SNP [dm6]	G	A	7.817e^-5	0.767	DOWNSTREAM Inx3 INTRON spg
X	20425635	X_20425635_SNP [dm3] X_20554608_SNP [dm6]	G	A	7.828e^-5	0.767	INTRON RunxB
X	9421014	X_9421014_SNP [dm3] X_9526981_SNP [dm6]	C	T	7.916e^-5	0.767	INTRON CG32700
2R	8021436	2R_8021436_SNP [dm3] 2R_12133931_SNP [dm6]	G	T	7.980e^-5	0.767	INTERGENIC
2L	6998917	2L_6998917_SNP [dm3] 2L_6998917_SNP [dm6]	G	C	8.013e^-5	0.767	INTRON uif
2L	12175971	2L_12175971_DEL [dm3] 2L_12175971_DEL [dm6]	TTC	T	8.076e^-5	0.767	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	7952459	2L_7952459_SNP [dm3] 2L_7952459_SNP [dm6]	A	G	8.137e^-5	0.767	INTRON Snoo
2L	16437342	2L_16437342_SNP [dm3] 2L_16437342_SNP [dm6]	A	T	8.144e^-5	0.767	INTRON CG5888
3L	12349652	3L_12349652_SNP [dm3] 3L_12356552_SNP [dm6]	C	T	8.178e^-5	0.767	INTERGENIC
2L	3106262	2L_3106262_SNP [dm3] 2L_3106262_SNP [dm6]	G	A	8.186e^-5	0.767	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8060112	2R_8060112_DEL [dm3] 2R_12172607_DEL [dm6]	AA	A	8.189e^-5	0.767	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18308202	2L_18308202_SNP [dm3] 2L_18308202_SNP [dm6]	C	G	8.219e^-5	0.767	DOWNSTREAM CG43354 EXON CR43353	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8461477	2R_8461477_SNP [dm3] 2R_12573972_SNP [dm6]	A	G	8.344e^-5	0.769	INTRON ClC-b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13900851	2R_13900851_SNP [dm3] 2R_18013346_SNP [dm6]	G	T	8.427e^-5	0.769	INTERGENIC
X	19485057	X_19485057_SNP [dm3] X_19591024_SNP [dm6]	A	T	8.438e^-5	0.769	UPSTREAM CG14219 INTERGENIC
X	2825789	X_2825789_SNP [dm3] X_2931756_SNP [dm6]	A	C	8.444e^-5	0.769	SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo
X	18404409	X_18404409_SNP [dm3] X_18510376_SNP [dm6]	A	G	8.449e^-5	0.769	INTRON Ggt-1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	567743	3L_567743_SNP [dm3] 3L_567743_SNP [dm6]	C	G	8.489e^-5	0.769	INTRON hipk
3L	11547441	3L_11547441_SNP [dm3] 3L_11554341_SNP [dm6]	C	G	8.704e^-5	0.771	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15485135	X_15485135_SNP [dm3] X_15591102_SNP [dm6]	T	A	8.725e^-5	0.771	INTRON CG9220
3L	12357305	3L_12357305_DEL [dm3] 3L_12364205_DEL [dm6]	GATAACAGTT	G	8.744e^-5	0.771	INTERGENIC
3R	24973738	3R_24973738_SNP [dm3] 3R_29148016_SNP [dm6]	C	T	8.825e^-5	0.771	SYNONYMOUS_CODING CG11882 UPSTREAM Pglym78	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	981818	X_981818_SNP [dm3] X_1087785_SNP [dm6]	C	T	8.941e^-5	0.771	INTRON CR44779 & 1 other EXON CR44779
2R	8063730	2R_8063730_SNP [dm3] 2R_12176225_SNP [dm6]	C	T	8.959e^-5	0.771	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7436600	3L_7436600_SNP [dm3] 3L_7443500_SNP [dm6]	T	G	9.039e^-5	0.771	INTRON CG42458
2L	18736589	2L_18736589_SNP [dm3] 2L_18736589_SNP [dm6]	T	A	9.043e^-5	0.771	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22858885	3R_22858885_INS [dm3] 3R_27033163_INS [dm6]	T	TG	9.081e^-5	0.771	INTRON RYa-R
3R	15305314	3R_15305314_SNP [dm3] 3R_19479592_SNP [dm6]	C	T	9.125e^-5	0.771	NON_SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13673865	X_13673865_SNP [dm3] X_13779832_SNP [dm6]	C	T	9.150e^-5	0.771	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15014751	X_15014751_SNP [dm3] X_15120718_SNP [dm6]	G	A	9.163e^-5	0.771	INTERGENIC
3R	23182944	3R_23182944_SNP [dm3] 3R_27357222_SNP [dm6]	A	G	9.166e^-5	0.771	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6817901	X_6817901_SNP [dm3] X_6923868_SNP [dm6]	G	T	9.304e^-5	0.771	INTRON CG14431
3R	25518966	3R_25518966_SNP [dm3] 3R_29693244_SNP [dm6]	G	T	9.310e^-5	0.771	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24676578	3R_24676578_SNP [dm3] 3R_28850856_SNP [dm6]	C	G	9.313e^-5	0.771	INTRON spg
3L	7549468	3L_7549468_SNP [dm3] 3L_7556368_SNP [dm6]	G	T	9.466e^-5	0.771	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2R	13506513	2R_13506513_SNP [dm3] 2R_17619008_SNP [dm6]	T	G	9.554e^-5	0.771	INTRON CG10936
3R	20976500	3R_20976500_SNP [dm3] 3R_25150778_SNP [dm6]	G	A	9.554e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18315386	2L_18315386_SNP [dm3] 2L_18315386_SNP [dm6]	G	A	9.615e^-5	0.771	INTERGENIC
X	22220200	X_22220200_SNP [dm3] X_22818364_SNP [dm6]	T	C	9.645e^-5	0.771	INTERGENIC
3R	11298363	3R_11298363_SNP [dm3] 3R_15472641_SNP [dm6]	T	A	9.680e^-5	0.771	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
X	7944938	X_7944938_SNP [dm3] X_8050905_SNP [dm6]	C	T	9.687e^-5	0.771	INTRON fs_1_h
3R	22162820	3R_22162820_SNP [dm3] 3R_26337098_SNP [dm6]	A	T	9.687e^-5	0.771	INTRON CG33970
2L	11943856	2L_11943856_SNP [dm3] 2L_11943856_SNP [dm6]	C	A	9.739e^-5	0.771	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2R	8062000	2R_8062000_SNP [dm3] 2R_12174495_SNP [dm6]	T	C	9.749e^-5	0.771	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	720464	2L_720464_SNP [dm3] 2L_720464_SNP [dm6]	A	G	9.802e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1278814	2L_1278814_SNP [dm3] 2L_1278814_SNP [dm6]	A	C	9.866e^-5	0.771	INTRON robo3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15129715	2L_15129715_SNP [dm3] 2L_15129715_SNP [dm6]	T	A	9.925e^-5	0.771	DOWNSTREAM CR44706 EXON CR43854
2L	1278063	2L_1278063_SNP [dm3] 2L_1278063_SNP [dm6]	A	G	9.941e^-5	0.771	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12830997	2R_12830997_SNP [dm3] 2R_16943492_SNP [dm6]	C	T	9.950e^-5	0.771	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2L	7925301	2L_7925301_SNP [dm3] 2L_7925301_SNP [dm6]	G	A	9.975e^-5	0.771	INTRON Snoo
2L	7963018	2L_7963018_SNP [dm3] 2L_7963018_SNP [dm6]	T	C	9.991e^-5	0.771	INTRON Snoo
2L	933986	2L_933986_SNP [dm3] 2L_933986_SNP [dm6]	G	T	1.003e^-4	0.771	INTRON CG4341
2R	7139746	2R_7139746_SNP [dm3] 2R_11252241_SNP [dm6]	C	A	1.010e^-4	0.771	SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da
X	12369541	X_12369541_SNP [dm3] X_12475508_SNP [dm6]	A	C	1.016e^-4	0.771	INTRON CG42258
2R	8078861	2R_8078861_SNP [dm3] 2R_12191356_SNP [dm6]	T	C	1.017e^-4	0.771	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2L	18860618	2L_18860618_SNP [dm3] 2L_18860618_SNP [dm6]	G	T	1.019e^-4	0.771	UTR_3_PRIME tup
2R	2726653	2R_2726653_SNP [dm3] 2R_6839148_SNP [dm6]	T	A	1.023e^-4	0.771	UPSTREAM CG9445 DOWNSTREAM CG15236 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18820824	2L_18820824_SNP [dm3] 2L_18820824_SNP [dm6]	C	T	1.023e^-4	0.771	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16437269	2L_16437269_SNP [dm3] 2L_16437269_SNP [dm6]	C	A	1.024e^-4	0.771	INTRON CG5888
2L	6611856	2L_6611856_SNP [dm3] 2L_6611856_SNP [dm6]	C	T	1.024e^-4	0.771	INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	13157075	3R_13157075_SNP [dm3] 3R_17331353_SNP [dm6]	C	T	1.030e^-4	0.772	INTRON beat-IIa
3L	10613678	3L_10613678_SNP [dm3] 3L_10620578_SNP [dm6]	A	T	1.034e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	12384980	X_12384980_SNP [dm3] X_12490947_SNP [dm6]	G	A	1.039e^-4	0.773	SYNONYMOUS_CODING Lsp1alpha
2L	11222972	2L_11222972_SNP [dm3] 2L_11222972_SNP [dm6]	T	A	1.047e^-4	0.776	INTRON ab
2R	10351059	2R_10351059_SNP [dm3] 2R_14463554_SNP [dm6]	T	A	1.053e^-4	0.777	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10216849	2R_10216849_SNP [dm3] 2R_14329344_SNP [dm6]	T	G	1.069e^-4	0.782	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2R	8463792	2R_8463792_SNP [dm3] 2R_12576287_SNP [dm6]	G	T	1.073e^-4	0.782	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3L	5518528	3L_5518528_SNP [dm3] 3L_5525428_SNP [dm6]	G	A	1.075e^-4	0.782	INTRON Lkr
3R	24494954	3R_24494954_SNP [dm3] 3R_28669232_SNP [dm6]	C	T	1.076e^-4	0.782	UPSTREAM CG33346 INTERGENIC
3R	18885847	3R_18885847_SNP [dm3] 3R_23060125_SNP [dm6]	C	T	1.093e^-4	0.789	INTRON sav	TF binding site mE1_TFBS_cad
X	7943407	X_7943407_SNP [dm3] X_8049374_SNP [dm6]	T	G	1.095e^-4	0.789	UTR_3_PRIME fs_1_h DOWNSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	18347569	2L_18347569_SNP [dm3] 2L_18347569_SNP [dm6]	T	A	1.099e^-4	0.789	INTRON Fas3
2L	12175935	2L_12175935_DEL [dm3] 2L_12175935_DEL [dm6]	ATATAT	G	1.104e^-4	0.789	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	18652501	2L_18652501_SNP [dm3] 2L_18652501_SNP [dm6]	G	A	1.118e^-4	0.789	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6697104	2R_6697104_SNP [dm3] 2R_10809599_SNP [dm6]	T	A	1.118e^-4	0.789	UTR_5_PRIME CG12935 UPSTREAM CG12935 & 1 other DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	11603842	X_11603842_SNP [dm3] X_11709809_SNP [dm6]	T	A	1.119e^-4	0.789	UTR_5_PRIME FucT6 DOWNSTREAM Amun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	9496393	2R_9496393_SNP [dm3] 2R_13608888_SNP [dm6]	T	C	1.125e^-4	0.789	NON_SYNONYMOUS_CODING CG12464
3L	9079990	3L_9079990_SNP [dm3] 3L_9086890_SNP [dm6]	G	A	1.127e^-4	0.789	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3R	25518886	3R_25518886_SNP [dm3] 3R_29693164_SNP [dm6]	G	T	1.128e^-4	0.789	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	20145143	X_20145143_SNP [dm3] X_20274117_SNP [dm6]	C	T	1.141e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9573085	2R_9573085_SNP [dm3] 2R_13685580_SNP [dm6]	T	A	1.141e^-4	0.789	INTRON fas
3L	12358395	3L_12358395_SNP [dm3] 3L_12365295_SNP [dm6]	G	A	1.151e^-4	0.789	INTERGENIC
2R	18339918	2R_18339918_SNP [dm3] 2R_22452413_SNP [dm6]	A	G	1.153e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18277772	3L_18277772_SNP [dm3] 3L_18284672_SNP [dm6]	C	T	1.161e^-4	0.789	INTERGENIC
3R	3883739	3R_3883739_SNP [dm3] 3R_8058017_SNP [dm6]	A	G	1.175e^-4	0.789	INTERGENIC
2L	11200910	2L_11200910_SNP [dm3] 2L_11200910_SNP [dm6]	A	C	1.181e^-4	0.789	INTRON Ca-beta
2L	12025257	2L_12025257_SNP [dm3] 2L_12025257_SNP [dm6]	G	A	1.182e^-4	0.789	UPSTREAM CR44587 INTERGENIC
2R	8063706	2R_8063706_SNP [dm3] 2R_12176201_SNP [dm6]	G	C	1.187e^-4	0.789	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18277793	3L_18277793_SNP [dm3] 3L_18284693_SNP [dm6]	C	A	1.191e^-4	0.789	INTERGENIC
X	13673878	X_13673878_SNP [dm3] X_13779845_SNP [dm6]	A	G	1.197e^-4	0.789	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25519048	3R_25519048_SNP [dm3] 3R_29693326_SNP [dm6]	C	A	1.200e^-4	0.789	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18277775	3L_18277775_DEL [dm3] 3L_18284675_DEL [dm6]	TG	T	1.201e^-4	0.789	INTERGENIC
X	22220256	X_22220256_SNP [dm3] X_22818420_SNP [dm6]	T	C	1.201e^-4	0.789	INTERGENIC
3L	7549100	3L_7549100_SNP [dm3] 3L_7556000_SNP [dm6]	T	C	1.205e^-4	0.789	SYNONYMOUS_CODING CG14837
2L	12175947	2L_12175947_SNP [dm3] 2L_12175947_SNP [dm6]	C	A	1.208e^-4	0.789	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3L	18277774	3L_18277774_SNP [dm3] 3L_18284674_SNP [dm6]	A	C	1.212e^-4	0.789	INTERGENIC
2R	8020678	2R_8020678_SNP [dm3] 2R_12133173_SNP [dm6]	A	T	1.212e^-4	0.789	INTERGENIC
X	15192040	X_15192040_SNP [dm3] X_15298007_SNP [dm6]	T	C	1.218e^-4	0.789	DOWNSTREAM CG5877 INTRON CR44429 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	1100911	3R_1100911_SNP [dm3] 3R_5275189_SNP [dm6]	C	T	1.218e^-4	0.789	DOWNSTREAM CG31538 INTRON mtd
2L	5518525	2L_5518525_SNP [dm3] 2L_5518525_SNP [dm6]	G	C	1.218e^-4	0.789	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	24672697	3R_24672697_SNP [dm3] 3R_28846975_SNP [dm6]	C	T	1.232e^-4	0.789	INTRON spg
2L	7954425	2L_7954425_SNP [dm3] 2L_7954425_SNP [dm6]	C	T	1.233e^-4	0.789	INTRON Snoo
2R	17813242	2R_17813242_SNP [dm3] 2R_21925737_SNP [dm6]	C	A	1.235e^-4	0.789	INTRON Fili
2L	10072906	2L_10072906_SNP [dm3] 2L_10072906_SNP [dm6]	C	T	1.242e^-4	0.789	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7137791	X_7137791_SNP [dm3] X_7243758_SNP [dm6]	G	T	1.243e^-4	0.789	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2L	12175942	2L_12175942_SNP [dm3] 2L_12175942_SNP [dm6]	T	G	1.244e^-4	0.789	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	18908306	2L_18908306_SNP [dm3] 2L_18908306_SNP [dm6]	C	G	1.246e^-4	0.789	INTERGENIC
3R	9101588	3R_9101588_DEL [dm3] 3R_13275866_DEL [dm6]	TATT	T	1.257e^-4	0.791	INTERGENIC
3R	18886007	3R_18886007_SNP [dm3] 3R_23060285_SNP [dm6]	T	A	1.270e^-4	0.791	INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12175948	2L_12175948_DEL [dm3] 2L_12175948_DEL [dm6]	TTTATTATCTAA...	T	1.277e^-4	0.791	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	16437258	2L_16437258_DEL [dm3] 2L_16437258_DEL [dm6]	TTTTCAAA	T	1.299e^-4	0.791	INTRON CG5888
X	20454013	X_20454013_SNP [dm3] X_20582986_SNP [dm6]	T	G	1.300e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	981844	X_981844_SNP [dm3] X_1087811_SNP [dm6]	G	A	1.310e^-4	0.791	INTRON CR44779 & 1 other EXON CR44779
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	1.319e^-4	0.791	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8020985	2R_8020985_SNP [dm3] 2R_12133480_SNP [dm6]	G	C	1.326e^-4	0.791	INTERGENIC
3L	5903378	3L_5903378_SNP [dm3] 3L_5910278_SNP [dm6]	C	T	1.326e^-4	0.791	DOWNSTREAM CG13288 INTRON CG13288
2R	8100376	2R_8100376_SNP [dm3] 2R_12212871_SNP [dm6]	T	C	1.341e^-4	0.791	UPSTREAM Sr-CII INTERGENIC
2L	12331116	2L_12331116_SNP [dm3] 2L_12331116_SNP [dm6]	C	A	1.341e^-4	0.791	INTERGENIC
2R	8069453	2R_8069453_SNP [dm3] 2R_12181948_SNP [dm6]	G	T	1.341e^-4	0.791	SYNONYMOUS_CODING wash UPSTREAM CG33964 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12790783	X_12790783_SNP [dm3] X_12896750_SNP [dm6]	G	A	1.363e^-4	0.791	UTR_5_PRIME Pde9 DOWNSTREAM CG32650	TF binding site BDTNP1_TFBS_dl
2R	4539557	2R_4539557_INS [dm3] 2R_8652052_INS [dm6]	T	TC	1.383e^-4	0.791	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2L	16437256	2L_16437256_SNP [dm3] 2L_16437256_SNP [dm6]	T	A	1.383e^-4	0.791	INTRON CG5888
3R	22442757	3R_22442757_SNP [dm3] 3R_26617035_SNP [dm6]	G	C	1.385e^-4	0.791	INTERGENIC
3R	21999331	3R_21999331_SNP [dm3] 3R_26173609_SNP [dm6]	A	T	1.386e^-4	0.791	INTRON CG31323
3L	10248449	3L_10248449_SNP [dm3] 3L_10255349_SNP [dm6]	C	T	1.390e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8059934	2R_8059934_SNP [dm3] 2R_12172429_SNP [dm6]	G	A	1.394e^-4	0.791	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	9851636	2L_9851636_SNP [dm3] 2L_9851636_SNP [dm6]	C	G	1.395e^-4	0.791	INTRON nAChRalpha6
2L	9851768	2L_9851768_SNP [dm3] 2L_9851768_SNP [dm6]	G	C	1.395e^-4	0.791	INTRON nAChRalpha6
2L	7954041	2L_7954041_SNP [dm3] 2L_7954041_SNP [dm6]	A	G	1.398e^-4	0.791	INTRON Snoo
3L	16469953	3L_16469953_SNP [dm3] 3L_16476853_SNP [dm6]	A	C	1.405e^-4	0.791	INTRON CG33158 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20238537	2R_20238537_SNP [dm3] 2R_24351014_SNP [dm6]	T	C	1.416e^-4	0.791	SYNONYMOUS_CODING CG44812 DOWNSTREAM bs & 1 other INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8060899	2R_8060899_SNP [dm3] 2R_12173394_SNP [dm6]	A	G	1.418e^-4	0.791	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8060917	2R_8060917_SNP [dm3] 2R_12173412_SNP [dm6]	C	G	1.418e^-4	0.791	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10909892	3L_10909892_SNP [dm3] 3L_10916792_SNP [dm6]	G	A	1.420e^-4	0.791	INTERGENIC
3R	728241	3R_728241_SNP [dm3] 3R_4902519_SNP [dm6]	T	A	1.423e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22879684	3R_22879684_SNP [dm3] 3R_27053962_SNP [dm6]	T	C	1.424e^-4	0.791	INTRON RYa-R
3R	18885907	3R_18885907_SNP [dm3] 3R_23060185_SNP [dm6]	A	T	1.436e^-4	0.791	INTRON sav
3L	18328698	3L_18328698_SNP [dm3] 3L_18335598_SNP [dm6]	T	C	1.438e^-4	0.791	INTERGENIC
2R	8067090	2R_8067090_SNP [dm3] 2R_12179585_SNP [dm6]	T	C	1.439e^-4	0.791	UTR_3_PRIME CG8860 UPSTREAM wash EXON CR45264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11150564	2L_11150564_SNP [dm3] 2L_11150564_SNP [dm6]	A	G	1.440e^-4	0.791	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_kn
3L	12357452	3L_12357452_SNP [dm3] 3L_12364352_SNP [dm6]	A	C	1.451e^-4	0.791	INTERGENIC
3R	14722507	3R_14722507_SNP [dm3] 3R_18896785_SNP [dm6]	G	A	1.451e^-4	0.791	INTERGENIC
3R	6327379	3R_6327379_SNP [dm3] 3R_10501657_SNP [dm6]	G	A	1.453e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9817362	3L_9817362_SNP [dm3] 3L_9824262_SNP [dm6]	T	C	1.456e^-4	0.791	UPSTREAM Ilp5 INTRON CG43897
2L	16437267	2L_16437267_SNP [dm3] 2L_16437267_SNP [dm6]	T	A	1.459e^-4	0.791	INTRON CG5888
2L	3972743	2L_3972743_SNP [dm3] 2L_3972743_SNP [dm6]	G	C	1.461e^-4	0.791	INTRON fred
2L	18945546	2L_18945546_SNP [dm3] 2L_18945546_SNP [dm6]	T	C	1.461e^-4	0.791	UPSTREAM CR44740 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA transposable element FlyBase
X	13673863	X_13673863_SNP [dm3] X_13779830_SNP [dm6]	C	A	1.466e^-4	0.791	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8142677	3L_8142677_SNP [dm3] 3L_8149577_SNP [dm6]	A	G	1.471e^-4	0.791	INTRON CG13676
2L	1278797	2L_1278797_SNP [dm3] 2L_1278797_SNP [dm6]	A	C	1.472e^-4	0.791	INTRON robo3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12790276	X_12790276_DEL [dm3] X_12896243_DEL [dm6]	TAAATCTGCT	T	1.472e^-4	0.791	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10892866	2L_10892866_SNP [dm3] 2L_10892866_SNP [dm6]	A	G	1.473e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	18269129	3R_18269129_SNP [dm3] 3R_22443407_SNP [dm6]	C	G	1.474e^-4	0.791	NON_SYNONYMOUS_CODING CG12499
2L	17244148	2L_17244148_SNP [dm3] 2L_17244148_SNP [dm6]	C	G	1.475e^-4	0.791	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da
X	13969625	X_13969625_SNP [dm3] X_14075592_SNP [dm6]	T	A	1.477e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6155233	2R_6155233_SNP [dm3] 2R_10267728_SNP [dm6]	T	A	1.486e^-4	0.791	SPLICE_SITE_REGION CG12910 INTRON CG12910
2L	7963308	2L_7963308_SNP [dm3] 2L_7963308_SNP [dm6]	C	T	1.498e^-4	0.791	INTRON Snoo
3R	16928939	3R_16928939_SNP [dm3] 3R_21103217_SNP [dm6]	T	C	1.500e^-4	0.791	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12207995	2L_12207995_SNP [dm3] 2L_12207995_SNP [dm6]	G	C	1.504e^-4	0.791	UTR_5_PRIME CG31759 INTRON aret & 1 other
2L	12335004	2L_12335004_SNP [dm3] 2L_12335004_SNP [dm6]	T	A	1.506e^-4	0.791	INTERGENIC
3R	713220	3R_713220_SNP [dm3] 3R_4887498_SNP [dm6]	A	C	1.507e^-4	0.791	INTERGENIC
3L	5518891	3L_5518891_SNP [dm3] 3L_5525791_SNP [dm6]	A	C	1.508e^-4	0.791	INTRON Lkr
2L	3648752	2L_3648752_SNP [dm3] 2L_3648752_SNP [dm6]	C	T	1.509e^-4	0.791	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12260628	2L_12260628_SNP [dm3] 2L_12260628_SNP [dm6]	G	A	1.509e^-4	0.791	INTRON aret
2L	14440696	2L_14440696_SNP [dm3] 2L_14440696_SNP [dm6]	T	C	1.513e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6686838	2R_6686838_INS [dm3] 2R_10799333_INS [dm6]	T	TAAT	1.515e^-4	0.791	UPSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4150758	2L_4150758_SNP [dm3] 2L_4150758_SNP [dm6]	G	A	1.523e^-4	0.791	SYNONYMOUS_CODING CG2955
3L	7438766	3L_7438766_SNP [dm3] 3L_7445666_SNP [dm6]	C	T	1.530e^-4	0.791	SPLICE_SITE_REGION CG42458 INTRON CG42458
3R	14697258	3R_14697258_SNP [dm3] 3R_18871536_SNP [dm6]	A	G	1.534e^-4	0.791	INTERGENIC
3R	25920745	3R_25920745_SNP [dm3] 3R_30095023_SNP [dm6]	C	T	1.538e^-4	0.791	INTRON sima	TF binding site mE1_TFBS_inv
2L	7287638	2L_7287638_SNP [dm3] 2L_7287638_SNP [dm6]	T	C	1.540e^-4	0.791	INTERGENIC
3R	24242197	3R_24242197_SNP [dm3] 3R_28416475_SNP [dm6]	A	T	1.553e^-4	0.791	INTERGENIC
2L	13626483	2L_13626483_SNP [dm3] 2L_13626483_SNP [dm6]	T	C	1.568e^-4	0.791	INTRON kuz
2R	6091103	2R_6091103_SNP [dm3] 2R_10203598_SNP [dm6]	G	C	1.578e^-4	0.791	DOWNSTREAM Hr46 INTERGENIC
3L	20442941	3L_20442941_SNP [dm3] 3L_20449841_SNP [dm6]	G	A	1.578e^-4	0.791	DOWNSTREAM CG5199 INTRON CG5910
X	7137834	X_7137834_SNP [dm3] X_7243801_SNP [dm6]	A	T	1.597e^-4	0.791	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	17003211	2R_17003211_SNP [dm3] 2R_21115706_SNP [dm6]	G	C	1.601e^-4	0.791	INTRON ktub
2L	5928864	2L_5928864_SNP [dm3] 2L_5928864_SNP [dm6]	G	A	1.602e^-4	0.791	INTRON dsf
3L	11946135	3L_11946135_SNP [dm3] 3L_11953035_SNP [dm6]	A	G	1.603e^-4	0.791	SYNONYMOUS_CODING obst-G DOWNSTREAM CG17826	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7467997	2L_7467997_SNP [dm3] 2L_7467997_SNP [dm6]	A	T	1.604e^-4	0.791	INTRON CG6055
2R	8018974	2R_8018974_SNP [dm3] 2R_12131469_SNP [dm6]	A	T	1.615e^-4	0.791	INTERGENIC
2L	14866692	2L_14866692_SNP [dm3] 2L_14866692_SNP [dm6]	C	A	1.622e^-4	0.791	INTERGENIC
2L	18214013	2L_18214013_SNP [dm3] 2L_18214013_SNP [dm6]	T	G	1.623e^-4	0.791	INTRON CG42750
2R	8530076	2R_8530076_SNP [dm3] 2R_12642571_SNP [dm6]	C	A	1.625e^-4	0.791	INTRON CG8785
2L	14405672	2L_14405672_SNP [dm3] 2L_14405672_SNP [dm6]	C	A	1.628e^-4	0.791	INTRON elB	TF binding site mE1_TFBS_cad
2R	8019960	2R_8019960_SNP [dm3] 2R_12132455_SNP [dm6]	G	A	1.630e^-4	0.791	INTERGENIC
3L	12357488	3L_12357488_SNP [dm3] 3L_12364388_SNP [dm6]	C	T	1.636e^-4	0.791	INTERGENIC
3L	14367731	3L_14367731_SNP [dm3] 3L_14374631_SNP [dm6]	G	C	1.637e^-4	0.791	INTERGENIC
3L	10514205	3L_10514205_DEL [dm3] 3L_10521105_DEL [dm6]	AA	A	1.639e^-4	0.791	INTRON A2bp1
2L	7559546	2L_7559546_SNP [dm3] 2L_7559546_SNP [dm6]	C	G	1.642e^-4	0.791	INTRON RapGAP1
2L	1820591	2L_1820591_SNP [dm3] 2L_1820591_SNP [dm6]	T	A	1.651e^-4	0.791	DOWNSTREAM CG31933 INTERGENIC
X	13673866	X_13673866_SNP [dm3] X_13779833_SNP [dm6]	T	A	1.656e^-4	0.791	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26575911	3R_26575911_DEL [dm3] 3R_30750189_DEL [dm6]	TCCTGTTT	T	1.658e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25936339	3R_25936339_SNP [dm3] 3R_30110617_SNP [dm6]	T	C	1.663e^-4	0.791	SPLICE_SITE_REGION sima SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad
X	1246366	X_1246366_SNP [dm3] X_1352333_SNP [dm6]	C	T	1.664e^-4	0.791	SYNONYMOUS_CODING CG12773
3L	18170755	3L_18170755_SNP [dm3] 3L_18177655_SNP [dm6]	T	G	1.672e^-4	0.791	INTRON W	TF binding site BDTNP1_TFBS_da
2R	6560717	2R_6560717_SNP [dm3] 2R_10673212_SNP [dm6]	A	T	1.676e^-4	0.791	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11733657	2L_11733657_INS [dm3] 2L_11733657_INS [dm6]	T	TCTTTCTCTTTTT...	1.678e^-4	0.791	INTERGENIC
2R	7139755	2R_7139755_SNP [dm3] 2R_11252250_SNP [dm6]	G	T	1.681e^-4	0.791	SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da
3R	726537	3R_726537_SNP [dm3] 3R_4900815_SNP [dm6]	T	C	1.682e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8077982	2R_8077982_SNP [dm3] 2R_12190477_SNP [dm6]	A	G	1.683e^-4	0.791	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	9458119	X_9458119_SNP [dm3] X_9564086_SNP [dm6]	T	G	1.689e^-4	0.791	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7446651	3L_7446651_SNP [dm3] 3L_7453551_SNP [dm6]	A	T	1.689e^-4	0.791	INTRON CG42458	TF binding site mE1_TFBS_cad
2L	9886885	2L_9886885_SNP [dm3] 2L_9886885_SNP [dm6]	A	G	1.691e^-4	0.791	UPSTREAM CR44701 & 1 other INTERGENIC
2R	6018337	2R_6018337_SNP [dm3] 2R_10130832_SNP [dm6]	C	G	1.717e^-4	0.791	INTRON gem	TF binding site BDTNP1_TFBS_dl
3L	20455160	3L_20455160_SNP [dm3] 3L_20462060_SNP [dm6]	A	T	1.717e^-4	0.791	UTR_3_PRIME mag INTRON CG5195	TF binding site mE1_TFBS_cad
X	13920622	X_13920622_SNP [dm3] X_14026589_SNP [dm6]	T	G	1.717e^-4	0.791	UPSTREAM tRNA:S7:12Ed INTERGENIC
3L	7549245	3L_7549245_SNP [dm3] 3L_7556145_SNP [dm6]	C	G	1.719e^-4	0.791	NON_SYNONYMOUS_CODING CG14837
3R	24868892	3R_24868892_SNP [dm3] 3R_29043170_SNP [dm6]	C	A	1.721e^-4	0.791	INTRON Pkc98E
3L	483948	3L_483948_SNP [dm3] 3L_483948_SNP [dm6]	C	A	1.725e^-4	0.791	INTRON klar
X	15540684	X_15540684_SNP [dm3] X_15646651_SNP [dm6]	T	G	1.732e^-4	0.791	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	8019459	2R_8019459_SNP [dm3] 2R_12131954_SNP [dm6]	G	C	1.740e^-4	0.791	INTERGENIC
3L	7549854	3L_7549854_SNP [dm3] 3L_7556754_SNP [dm6]	T	G	1.745e^-4	0.791	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2R	8100369	2R_8100369_SNP [dm3] 2R_12212864_SNP [dm6]	C	T	1.751e^-4	0.791	UPSTREAM Sr-CII INTERGENIC
3R	24672721	3R_24672721_SNP [dm3] 3R_28846999_SNP [dm6]	T	C	1.755e^-4	0.791	INTRON spg
X	8378678	X_8378678_SNP [dm3] X_8484645_SNP [dm6]	T	A	1.756e^-4	0.791	UPSTREAM CG33223 DOWNSTREAM otu & 1 other INTERGENIC
2L	12054127	2L_12054127_SNP [dm3] 2L_12054127_SNP [dm6]	A	T	1.762e^-4	0.791	INTRON JhI-21
2L	12331130	2L_12331130_SNP [dm3] 2L_12331130_SNP [dm6]	T	C	1.764e^-4	0.791	INTERGENIC
2L	18282010	2L_18282010_SNP [dm3] 2L_18282010_SNP [dm6]	C	T	1.765e^-4	0.791	INTERGENIC
3L	4465472	3L_4465472_SNP [dm3] 3L_4465472_SNP [dm6]	T	C	1.769e^-4	0.791	SYNONYMOUS_CODING CG32241	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9203306	X_9203306_SNP [dm3] X_9309273_SNP [dm6]	G	A	1.773e^-4	0.791	INTERGENIC
X	9595153	X_9595153_SNP [dm3] X_9701120_SNP [dm6]	G	C	1.775e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4116286	2L_4116286_SNP [dm3] 2L_4116286_SNP [dm6]	C	A	1.776e^-4	0.791	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	7137794	X_7137794_DEL [dm3] X_7243761_DEL [dm6]	GTT	G	1.778e^-4	0.791	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	4584091	2R_4584091_SNP [dm3] 2R_8696586_SNP [dm6]	T	A	1.778e^-4	0.791	UTR_5_PRIME CG8738 UPSTREAM CG8586
2L	11943824	2L_11943824_SNP [dm3] 2L_11943824_SNP [dm6]	A	C	1.790e^-4	0.791	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2L	4065312	2L_4065312_SNP [dm3] 2L_4065312_SNP [dm6]	G	T	1.801e^-4	0.791	INTRON ed
3L	849592	3L_849592_SNP [dm3] 3L_849592_SNP [dm6]	T	A	1.803e^-4	0.791	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7549825	3L_7549825_SNP [dm3] 3L_7556725_SNP [dm6]	G	A	1.804e^-4	0.791	SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
3R	22163180	3R_22163180_SNP [dm3] 3R_26337458_SNP [dm6]	G	C	1.808e^-4	0.791	INTRON CG33970
2L	12344304	2L_12344304_SNP [dm3] 2L_12344304_SNP [dm6]	T	C	1.810e^-4	0.791	UTR_5_PRIME bru-2 UPSTREAM CG43813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13012275	X_13012275_SNP [dm3] X_13118242_SNP [dm6]	T	A	1.821e^-4	0.791	INTRON CG42237
X	22219545	X_22219545_SNP [dm3] X_22817709_SNP [dm6]	T	A	1.822e^-4	0.791	INTERGENIC
2R	11133859	2R_11133859_SNP [dm3] 2R_15246354_SNP [dm6]	C	A	1.822e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	12176365	X_12176365_SNP [dm3] X_12282332_SNP [dm6]	T	C	1.824e^-4	0.791	INTRON Ten-a
X	986695	X_986695_SNP [dm3] X_1092662_SNP [dm6]	G	A	1.824e^-4	0.791	INTRON CG3655
2R	11625504	2R_11625504_SNP [dm3] 2R_15737999_SNP [dm6]	G	A	1.827e^-4	0.791	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9992107	2L_9992107_SNP [dm3] 2L_9992107_SNP [dm6]	A	G	1.829e^-4	0.791	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5903135	3L_5903135_SNP [dm3] 3L_5910035_SNP [dm6]	G	A	1.831e^-4	0.791	DOWNSTREAM CG13288 INTRON CG13288
X	10087798	X_10087798_SNP [dm3] X_10193765_SNP [dm6]	G	A	1.845e^-4	0.791	UTR_3_PRIME CG43902 INTRON CR44894
3R	24494782	3R_24494782_SNP [dm3] 3R_28669060_SNP [dm6]	A	T	1.849e^-4	0.791	UPSTREAM CG33346 INTERGENIC
2L	18299601	2L_18299601_SNP [dm3] 2L_18299601_SNP [dm6]	C	A	1.863e^-4	0.791	INTERGENIC
3R	24973849	3R_24973849_SNP [dm3] 3R_29148127_SNP [dm6]	G	A	1.863e^-4	0.791	START_GAINED CG11882 UTR_5_PRIME CG11882 UPSTREAM Pglym78 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	10285159	3L_10285159_SNP [dm3] 3L_10292059_SNP [dm6]	T	A	1.870e^-4	0.791	INTERGENIC
X	16154009	X_16154009_SNP [dm3] X_16259976_SNP [dm6]	T	G	1.879e^-4	0.791	INTERGENIC
2L	16549523	2L_16549523_SNP [dm3] 2L_16549523_SNP [dm6]	A	G	1.879e^-4	0.791	NON_SYNONYMOUS_CODING CG5968 INTRON CG42389
2L	16195517	2L_16195517_SNP [dm3] 2L_16195517_SNP [dm6]	G	A	1.882e^-4	0.791	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
3L	20442954	3L_20442954_SNP [dm3] 3L_20449854_SNP [dm6]	C	G	1.890e^-4	0.791	DOWNSTREAM CG5199 INTRON CG5910
2R	6560766	2R_6560766_SNP [dm3] 2R_10673261_SNP [dm6]	G	A	1.894e^-4	0.791	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2943348	X_2943348_SNP [dm3] X_3049315_SNP [dm6]	A	T	1.894e^-4	0.791	INTRON kirre
2L	838148	2L_838148_SNP [dm3] 2L_838148_SNP [dm6]	A	G	1.908e^-4	0.791	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14711629	X_14711629_SNP [dm3] X_14817596_SNP [dm6]	G	C	1.917e^-4	0.791	INTRON rut
2R	10009851	2R_10009851_SNP [dm3] 2R_14122346_SNP [dm6]	C	T	1.917e^-4	0.791	INTRON Prosap
2L	6334848	2L_6334848_SNP [dm3] 2L_6334848_SNP [dm6]	A	C	1.917e^-4	0.791	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15341898	2L_15341898_SNP [dm3] 2L_15341898_SNP [dm6]	A	G	1.922e^-4	0.791	INTERGENIC
3L	8305366	3L_8305366_SNP [dm3] 3L_8312266_SNP [dm6]	A	T	1.924e^-4	0.791	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25517327	3R_25517327_SNP [dm3] 3R_29691605_SNP [dm6]	A	G	1.926e^-4	0.791	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10514224	3L_10514224_SNP [dm3] 3L_10521124_SNP [dm6]	C	A	1.927e^-4	0.791	INTRON A2bp1	TF binding site mE1_TFBS_Trl
3R	22741926	3R_22741926_SNP [dm3] 3R_26916204_SNP [dm6]	G	A	1.927e^-4	0.791	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	10369633	3L_10369633_SNP [dm3] 3L_10376533_SNP [dm6]	A	T	1.929e^-4	0.791	INTERGENIC
X	13756208	X_13756208_SNP [dm3] X_13862175_SNP [dm6]	G	T	1.932e^-4	0.791	UTR_3_PRIME mamo INTRON mamo
3L	3154969	3L_3154969_INS [dm3] 3L_3154969_INS [dm6]	G	GG	1.934e^-4	0.791	UTR_3_PRIME BtbVII DOWNSTREAM BtbVII INTRON BtbVII
3L	7549770	3L_7549770_SNP [dm3] 3L_7556670_SNP [dm6]	T	C	1.938e^-4	0.791	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7137931	X_7137931_SNP [dm3] X_7243898_SNP [dm6]	A	G	1.938e^-4	0.791	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	11709730	3L_11709730_SNP [dm3] 3L_11716630_SNP [dm6]	C	T	1.939e^-4	0.791	INTERGENIC
3R	27187649	3R_27187649_SNP [dm3] 3R_31361927_SNP [dm6]	A	G	1.947e^-4	0.791	NON_SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_chinmo
2L	12082811	2L_12082811_SNP [dm3] 2L_12082811_SNP [dm6]	A	G	1.951e^-4	0.791	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8024102	2R_8024102_SNP [dm3] 2R_12136597_SNP [dm6]	C	G	1.954e^-4	0.791	INTERGENIC
2L	3974066	2L_3974066_SNP [dm3] 2L_3974066_SNP [dm6]	C	A	1.955e^-4	0.791	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9654173	X_9654173_SNP [dm3] X_9760140_SNP [dm6]	G	A	1.967e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	981811	X_981811_SNP [dm3] X_1087778_SNP [dm6]	G	A	1.968e^-4	0.791	INTRON CR44779 & 1 other EXON CR44779
3R	25757458	3R_25757458_DEL [dm3] 3R_29931736_DEL [dm6]	TA	T	1.974e^-4	0.791	INTRON Cog7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9984076	3R_9984076_SNP [dm3] 3R_14158354_SNP [dm6]	T	C	1.982e^-4	0.791	NON_SYNONYMOUS_CODING CG31327 UPSTREAM CG31533
3R	24513294	3R_24513294_SNP [dm3] 3R_28687572_SNP [dm6]	A	C	1.983e^-4	0.791	INTRON CG9990
3R	22032306	3R_22032306_SNP [dm3] 3R_26206584_SNP [dm6]	T	C	1.991e^-4	0.791	INTRON CR44320
2L	15129694	2L_15129694_SNP [dm3] 2L_15129694_SNP [dm6]	A	T	1.995e^-4	0.791	UPSTREAM CR43854 DOWNSTREAM CR44706 INTERGENIC
X	13673885	X_13673885_INS [dm3] X_13779852_INS [dm6]	C	CT	1.995e^-4	0.791	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	4710821	3R_4710821_SNP [dm3] 3R_8885099_SNP [dm6]	T	A	2.010e^-4	0.791	INTRON pyd
2L	6933948	2L_6933948_SNP [dm3] 2L_6933948_SNP [dm6]	T	A	2.014e^-4	0.791	INTRON CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1008435	X_1008435_SNP [dm3] X_1114402_SNP [dm6]	A	G	2.016e^-4	0.791	INTRON CG3655
3R	26776533	3R_26776533_SNP [dm3] 3R_30950811_SNP [dm6]	C	T	2.016e^-4	0.791	INTERGENIC
2L	1278040	2L_1278040_INS [dm3] 2L_1278040_INS [dm6]	A	AA	2.017e^-4	0.791	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7961065	2L_7961065_DEL [dm3] 2L_7961065_DEL [dm6]	CA	C	2.018e^-4	0.791	INTRON Snoo
2L	12181431	2L_12181431_SNP [dm3] 2L_12181431_SNP [dm6]	A	C	2.018e^-4	0.791	INTRON aret
2L	12260250	2L_12260250_INS [dm3] 2L_12260250_INS [dm6]	A	ACGAACATATTTA...	2.018e^-4	0.791	INTRON aret
X	18764868	X_18764868_SNP [dm3] X_18870835_SNP [dm6]	A	G	2.021e^-4	0.791	INTRON CG34401
2R	16078239	2R_16078239_SNP [dm3] 2R_20190734_SNP [dm6]	C	T	2.034e^-4	0.791	INTERGENIC
3L	14367753	3L_14367753_SNP [dm3] 3L_14374653_SNP [dm6]	A	G	2.034e^-4	0.791	INTERGENIC
X	11612816	X_11612816_SNP [dm3] X_11718783_SNP [dm6]	C	A	2.044e^-4	0.791	INTRON prtp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1184273	2L_1184273_SNP [dm3] 2L_1184273_SNP [dm6]	A	T	2.044e^-4	0.791	UPSTREAM CG5126 INTRON Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13809934	X_13809934_SNP [dm3] X_13915901_SNP [dm6]	A	T	2.046e^-4	0.791	INTRON mamo
3L	10511487	3L_10511487_SNP [dm3] 3L_10518387_SNP [dm6]	A	C	2.047e^-4	0.791	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13929457	X_13929457_SNP [dm3] X_14035424_SNP [dm6]	G	C	2.049e^-4	0.791	INTERGENIC
3L	7446702	3L_7446702_SNP [dm3] 3L_7453602_SNP [dm6]	A	C	2.049e^-4	0.791	INTRON CG42458	TF binding site mE1_TFBS_cad
X	13673912	X_13673912_INS [dm3] X_13779879_INS [dm6]	G	GAG	2.050e^-4	0.791	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1882030	2L_1882030_SNP [dm3] 2L_1882030_SNP [dm6]	G	C	2.051e^-4	0.791	UPSTREAM CG31663 DOWNSTREAM CG15358 INTERGENIC
2L	16550438	2L_16550438_SNP [dm3] 2L_16550438_SNP [dm6]	G	T	2.054e^-4	0.791	UPSTREAM CG5968 INTRON CG42389
X	15108623	X_15108623_SNP [dm3] X_15214590_SNP [dm6]	T	C	2.057e^-4	0.791	INTERGENIC
3R	22162848	3R_22162848_SNP [dm3] 3R_26337126_SNP [dm6]	A	T	2.063e^-4	0.791	INTRON CG33970
X	9384245	X_9384245_SNP [dm3] X_9490212_SNP [dm6]	A	C	2.064e^-4	0.791	INTRON mgl
3L	4146013	3L_4146013_SNP [dm3] 3L_4146013_SNP [dm6]	G	T	2.067e^-4	0.791	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17344488	2R_17344488_DEL [dm3] 2R_21456983_DEL [dm6]	CCTTCACTTCGC...	C	2.073e^-4	0.792	INTRON Sdc
3R	23770573	3R_23770573_SNP [dm3] 3R_27944851_SNP [dm6]	A	G	2.088e^-4	0.794	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15310068	3R_15310068_SNP [dm3] 3R_19484346_SNP [dm6]	C	A	2.099e^-4	0.794	NON_SYNONYMOUS_CODING Dys INTRON Dys
2L	7963004	2L_7963004_SNP [dm3] 2L_7963004_SNP [dm6]	A	T	2.108e^-4	0.794	INTRON Snoo
3R	728242	3R_728242_SNP [dm3] 3R_4902520_SNP [dm6]	T	C	2.110e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7137770	X_7137770_SNP [dm3] X_7243737_SNP [dm6]	A	G	2.111e^-4	0.794	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137800	X_7137800_SNP [dm3] X_7243767_SNP [dm6]	T	G	2.117e^-4	0.794	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	4715902	3L_4715902_SNP [dm3] 3L_4715902_SNP [dm6]	A	C	2.118e^-4	0.794	INTRON RhoGEF64C
2L	12335012	2L_12335012_SNP [dm3] 2L_12335012_SNP [dm6]	A	G	2.119e^-4	0.794	INTERGENIC
3R	23182959	3R_23182959_SNP [dm3] 3R_27357237_SNP [dm6]	T	C	2.119e^-4	0.794	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2944075	X_2944075_INS [dm3] X_3050042_INS [dm6]	T	TT	2.120e^-4	0.794	INTRON kirre
2L	7069443	2L_7069443_SNP [dm3] 2L_7069443_SNP [dm6]	C	T	2.150e^-4	0.802	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
2L	11357415	2L_11357415_SNP [dm3] 2L_11357415_SNP [dm6]	G	A	2.153e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	18357494	2L_18357494_SNP [dm3] 2L_18357494_SNP [dm6]	C	T	2.159e^-4	0.802	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14373729	3L_14373729_DEL [dm3] 3L_14380629_DEL [dm6]	GG	G	2.163e^-4	0.802	INTERGENIC
X	7118191	X_7118191_SNP [dm3] X_7224158_SNP [dm6]	C	T	2.167e^-4	0.802	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4897775	2L_4897775_SNP [dm3] 2L_4897775_SNP [dm6]	C	T	2.169e^-4	0.802	INTRON CG3036
3L	7446136	3L_7446136_DEL [dm3] 3L_7453036_DEL [dm6]	ATGCCACAGA	A	2.181e^-4	0.805	CODON_DELETION CG42458 DOWNSTREAM CG33278	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4150609	2L_4150609_SNP [dm3] 2L_4150609_SNP [dm6]	G	A	2.185e^-4	0.805	NON_SYNONYMOUS_CODING CG2955
3R	22163476	3R_22163476_SNP [dm3] 3R_26337754_SNP [dm6]	A	T	2.190e^-4	0.805	INTRON CG33970
2L	14446674	2L_14446674_SNP [dm3] 2L_14446674_SNP [dm6]	G	T	2.215e^-4	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	8142540	3L_8142540_SNP [dm3] 3L_8149440_SNP [dm6]	C	T	2.223e^-4	0.808	INTRON CG13676
X	19239937	X_19239937_SNP [dm3] X_19345904_SNP [dm6]	G	A	2.228e^-4	0.808	INTRON nAChRalpha7
3L	11861399	3L_11861399_SNP [dm3] 3L_11868299_SNP [dm6]	A	C	2.245e^-4	0.808	INTRON CG44837	TF binding site BDTNP1_TFBS_twi
X	13922288	X_13922288_SNP [dm3] X_14028255_SNP [dm6]	C	T	2.248e^-4	0.808	INTERGENIC
X	11812886	X_11812886_SNP [dm3] X_11918853_SNP [dm6]	A	G	2.249e^-4	0.808	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
2L	851273	2L_851273_SNP [dm3] 2L_851273_SNP [dm6]	C	G	2.251e^-4	0.808	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CG4291 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
3R	761247	3R_761247_SNP [dm3] 3R_4935525_SNP [dm6]	C	T	2.263e^-4	0.808	SYNONYMOUS_CODING Cdep INTRON Cdep	TF binding site mE1_TFBS_cad
2R	4147905	2R_4147905_SNP [dm3] 2R_8260400_SNP [dm6]	C	T	2.268e^-4	0.808	NON_SYNONYMOUS_CODING CG14759 DOWNSTREAM CG2291 & 1 other
3L	9080053	3L_9080053_DEL [dm3] 3L_9086953_DEL [dm6]	GATATCAGCCACCACAGCCA...	G	2.271e^-4	0.808	CODON_DELETION Tequila INTRON Tequila
2R	15095596	2R_15095596_SNP [dm3] 2R_19208091_SNP [dm6]	T	C	2.278e^-4	0.808	INTRON hppy
3R	22446226	3R_22446226_SNP [dm3] 3R_26620504_SNP [dm6]	T	A	2.279e^-4	0.808	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8069132	2R_8069132_SNP [dm3] 2R_12181627_SNP [dm6]	C	T	2.283e^-4	0.808	SYNONYMOUS_CODING wash	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1100383	2L_1100383_SNP [dm3] 2L_1100383_SNP [dm6]	A	G	2.289e^-4	0.808	INTRON CG4629
3R	21128511	3R_21128511_SNP [dm3] 3R_25302789_SNP [dm6]	A	G	2.293e^-4	0.808	NON_SYNONYMOUS_CODING CG31370 DOWNSTREAM CG13659
3R	24513210	3R_24513210_SNP [dm3] 3R_28687488_SNP [dm6]	C	A	2.294e^-4	0.808	INTRON CG9990
3L	10285017	3L_10285017_INS [dm3] 3L_10291917_INS [dm6]	A	AA	2.298e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9116942	3L_9116942_SNP [dm3] 3L_9123842_SNP [dm6]	A	T	2.303e^-4	0.808	INTRON bol
2L	14025279	2L_14025279_SNP [dm3] 2L_14025279_SNP [dm6]	C	T	2.305e^-4	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12398136	2L_12398136_SNP [dm3] 2L_12398136_SNP [dm6]	G	C	2.310e^-4	0.808	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
X	1484335	X_1484335_SNP [dm3] X_1590302_SNP [dm6]	C	A	2.310e^-4	0.808	INTRON br & 1 other
3R	18459947	3R_18459947_SNP [dm3] 3R_22634225_SNP [dm6]	T	G	2.312e^-4	0.808	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14042177	3L_14042177_SNP [dm3] 3L_14049077_SNP [dm6]	T	G	2.333e^-4	0.808	SPLICE_SITE_REGION blue INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9067454	2L_9067454_SNP [dm3] 2L_9067454_SNP [dm6]	G	A	2.334e^-4	0.808	INTRON CG31708
3R	18559699	3R_18559699_SNP [dm3] 3R_22733977_SNP [dm6]	A	G	2.338e^-4	0.808	UPSTREAM Takl2 DOWNSTREAM Dcr-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	12098869	3L_12098869_SNP [dm3] 3L_12105769_SNP [dm6]	G	A	2.344e^-4	0.808	INTERGENIC
3R	14722498	3R_14722498_SNP [dm3] 3R_18896776_SNP [dm6]	C	G	2.346e^-4	0.808	INTERGENIC
2L	4059212	2L_4059212_SNP [dm3] 2L_4059212_SNP [dm6]	T	C	2.348e^-4	0.808	INTRON ed
3L	1701455	3L_1701455_SNP [dm3] 3L_1701455_SNP [dm6]	A	T	2.359e^-4	0.808	SYNONYMOUS_CODING CG13931 INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25936384	3R_25936384_SNP [dm3] 3R_30110662_SNP [dm6]	T	G	2.369e^-4	0.808	INTRON sima	TF binding site mE1_TFBS_cad
2R	9738058	2R_9738058_SNP [dm3] 2R_13850553_SNP [dm6]	A	G	2.369e^-4	0.808	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	696107	3R_696107_SNP [dm3] 3R_4870385_SNP [dm6]	C	T	2.376e^-4	0.808	DOWNSTREAM opa INTERGENIC
2R	4539790	2R_4539790_SNP [dm3] 2R_8652285_SNP [dm6]	T	C	2.378e^-4	0.808	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	10087850	X_10087850_SNP [dm3] X_10193817_SNP [dm6]	G	A	2.386e^-4	0.808	UTR_3_PRIME CG43902 INTRON CR44894
3L	14367626	3L_14367626_SNP [dm3] 3L_14374526_SNP [dm6]	G	C	2.388e^-4	0.808	INTERGENIC
2R	17352558	2R_17352558_SNP [dm3] 2R_21465053_SNP [dm6]	G	C	2.391e^-4	0.808	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	13673893	X_13673893_SNP [dm3] X_13779860_SNP [dm6]	C	T	2.392e^-4	0.808	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
X	13673906	X_13673906_MNP [dm3] X_13779873_MNP [dm6]	TTT	ACA	2.392e^-4	0.808	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8641902	3L_8641902_SNP [dm3] 3L_8648802_SNP [dm6]	A	G	2.398e^-4	0.808	SYNONYMOUS_CODING Arr2 UPSTREAM Pex7 INTRON Pex7
2R	8085156	2R_8085156_SNP [dm3] 2R_12197651_SNP [dm6]	A	G	2.400e^-4	0.808	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14867878	2L_14867878_SNP [dm3] 2L_14867878_SNP [dm6]	A	G	2.400e^-4	0.808	INTERGENIC
3R	21126583	3R_21126583_SNP [dm3] 3R_25300861_SNP [dm6]	C	T	2.403e^-4	0.808	UPSTREAM CG13659 INTERGENIC
3L	7445820	3L_7445820_SNP [dm3] 3L_7452720_SNP [dm6]	C	T	2.405e^-4	0.808	DOWNSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7955459	2L_7955459_SNP [dm3] 2L_7955459_SNP [dm6]	A	G	2.413e^-4	0.808	INTRON Snoo
X	12790268	X_12790268_DEL [dm3] X_12896235_DEL [dm6]	TT	T	2.419e^-4	0.808	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	359132	4_359132_SNP [dm3] 4_338506_SNP [dm6]	G	C	2.427e^-4	0.808	INTRON PMCA
3L	8606296	3L_8606296_INS [dm3] 3L_8613196_INS [dm6]	A	ACTTCA	2.432e^-4	0.808	INTRON CG6282
3R	25185326	3R_25185326_SNP [dm3] 3R_29359604_SNP [dm6]	G	A	2.440e^-4	0.808	INTERGENIC
2L	12265489	2L_12265489_SNP [dm3] 2L_12265489_SNP [dm6]	C	A	2.442e^-4	0.808	INTRON aret
3R	4687917	3R_4687917_SNP [dm3] 3R_8862195_SNP [dm6]	T	G	2.443e^-4	0.808	SYNONYMOUS_CODING pyd UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	11881807	2L_11881807_SNP [dm3] 2L_11881807_SNP [dm6]	A	G	2.444e^-4	0.808	INTRON Pde1c
3R	26575438	3R_26575438_SNP [dm3] 3R_30749716_SNP [dm6]	G	A	2.448e^-4	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16051296	2L_16051296_SNP [dm3] 2L_16051296_SNP [dm6]	G	C	2.452e^-4	0.808	INTRON beat-Ia	TF binding site mE1_TFBS_cad
3R	27437677	3R_27437677_DEL [dm3] 3R_31611955_DEL [dm6]	GC	A	2.457e^-4	0.808	UPSTREAM CycG INTRON CycG & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	3511664	3R_3511664_SNP [dm3] 3R_7685942_SNP [dm6]	A	C	2.460e^-4	0.808	INTRON Nlg1
3L	6989688	3L_6989688_SNP [dm3] 3L_6996588_SNP [dm6]	C	G	2.461e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9407301	2R_9407301_SNP [dm3] 2R_13519796_SNP [dm6]	G	T	2.463e^-4	0.808	INTRON Vmat	TF binding site mE1_TFBS_cad
X	21499083	X_21499083_SNP [dm3] X_21628056_SNP [dm6]	G	A	2.465e^-4	0.808	INTRON DIP1	transposable element FlyBase
3R	651236	3R_651236_SNP [dm3] 3R_4825514_SNP [dm6]	C	A	2.466e^-4	0.808	INTERGENIC
2L	1042787	2L_1042787_SNP [dm3] 2L_1042787_SNP [dm6]	G	T	2.468e^-4	0.808	INTRON IA-2
X	7137802	X_7137802_SNP [dm3] X_7243769_SNP [dm6]	T	A	2.471e^-4	0.808	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	1363098	3L_1363098_SNP [dm3] 3L_1363098_SNP [dm6]	T	G	2.472e^-4	0.808	INTRON Ptp61F
X	13921639	X_13921639_SNP [dm3] X_14027606_SNP [dm6]	A	T	2.478e^-4	0.808	INTERGENIC
2L	6611001	2L_6611001_SNP [dm3] 2L_6611001_SNP [dm6]	G	C	2.484e^-4	0.808	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	9932728	2L_9932728_SNP [dm3] 2L_9932728_SNP [dm6]	C	A	2.485e^-4	0.808	SYNONYMOUS_CODING Cpr30F	TF binding site mE1_TFBS_chinmo
X	12820458	X_12820458_SNP [dm3] X_12926425_SNP [dm6]	C	T	2.486e^-4	0.808	INTRON fne	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6237225	2L_6237225_SNP [dm3] 2L_6237225_SNP [dm6]	T	G	2.490e^-4	0.808	INTERGENIC
3R	22162799	3R_22162799_SNP [dm3] 3R_26337077_SNP [dm6]	T	C	2.490e^-4	0.808	INTRON CG33970
2L	7963109	2L_7963109_SNP [dm3] 2L_7963109_SNP [dm6]	C	T	2.499e^-4	0.808	INTRON Snoo
2R	18274924	2R_18274924_SNP [dm3] 2R_22387419_SNP [dm6]	T	G	2.504e^-4	0.808	INTRON CG13506 EXON CR44757
3R	728922	3R_728922_SNP [dm3] 3R_4903200_SNP [dm6]	G	C	2.513e^-4	0.808	INTERGENIC
2L	12261699	2L_12261699_SNP [dm3] 2L_12261699_SNP [dm6]	T	A	2.520e^-4	0.808	INTRON aret
2L	1721404	2L_1721404_SNP [dm3] 2L_1721404_SNP [dm6]	G	A	2.525e^-4	0.808	INTRON Rim2
3L	14061868	3L_14061868_SNP [dm3] 3L_14068768_SNP [dm6]	C	T	2.528e^-4	0.808	INTRON CG32138	TF binding site mE1_TFBS_sens
2L	7872233	2L_7872233_SNP [dm3] 2L_7872233_SNP [dm6]	G	T	2.528e^-4	0.808	UPSTREAM Proc & 1 other EXON CR45364
X	7133035	X_7133035_SNP [dm3] X_7239002_SNP [dm6]	T	C	2.535e^-4	0.808	SYNONYMOUS_CODING CG9650 INTRON CR44357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22162618	3R_22162618_SNP [dm3] 3R_26336896_SNP [dm6]	G	A	2.536e^-4	0.808	INTRON CG33970
3R	21125913	3R_21125913_SNP [dm3] 3R_25300191_SNP [dm6]	T	C	2.537e^-4	0.808	UPSTREAM CG31288 & 1 other INTERGENIC
2R	17898483	2R_17898483_SNP [dm3] 2R_22010978_SNP [dm6]	A	G	2.540e^-4	0.808	INTRON CG34370
X	11760188	X_11760188_SNP [dm3] X_11866155_SNP [dm6]	T	C	2.544e^-4	0.808	SYNONYMOUS_CODING CG2025	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16927812	3R_16927812_SNP [dm3] 3R_21102090_SNP [dm6]	T	C	2.546e^-4	0.808	UPSTREAM CG5745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7443581	3L_7443581_SNP [dm3] 3L_7450481_SNP [dm6]	G	A	2.551e^-4	0.808	SYNONYMOUS_CODING CG42458 UPSTREAM CG33278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1183532	2L_1183532_SNP [dm3] 2L_1183532_SNP [dm6]	C	T	2.566e^-4	0.811	NON_SYNONYMOUS_CODING CG5126 UPSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1217248	X_1217248_SNP [dm3] X_1323215_SNP [dm6]	G	C	2.570e^-4	0.811	NON_SYNONYMOUS_CODING fs_1_N UPSTREAM DAAM	TF binding site mE1_TFBS_chinmo
3L	10282688	3L_10282688_SNP [dm3] 3L_10289588_SNP [dm6]	A	G	2.576e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12175796	2L_12175796_SNP [dm3] 2L_12175796_SNP [dm6]	A	C	2.580e^-4	0.812	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10444710	2L_10444710_SNP [dm3] 2L_10444710_SNP [dm6]	A	G	2.590e^-4	0.812	INTRON loh
X	15005335	X_15005335_SNP [dm3] X_15111302_SNP [dm6]	A	T	2.594e^-4	0.812	NON_SYNONYMOUS_CODING Rab3-GEF UTR_3_PRIME Rab3-GEF DOWNSTREAM Rab3-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24676237	3R_24676237_SNP [dm3] 3R_28850515_SNP [dm6]	A	G	2.594e^-4	0.812	INTRON spg
3L	6664486	3L_6664486_SNP [dm3] 3L_6671386_SNP [dm6]	G	A	2.606e^-4	0.814	INTERGENIC
2L	12176186	2L_12176186_SNP [dm3] 2L_12176186_SNP [dm6]	C	T	2.609e^-4	0.814	INTRON aret & 1 other
2L	12180833	2L_12180833_SNP [dm3] 2L_12180833_SNP [dm6]	T	C	2.616e^-4	0.815	INTRON aret
2L	15225138	2L_15225138_SNP [dm3] 2L_15225138_SNP [dm6]	C	G	2.630e^-4	0.815	INTERGENIC
3R	704523	3R_704523_SNP [dm3] 3R_4878801_SNP [dm6]	C	A	2.630e^-4	0.815	UPSTREAM laf INTERGENIC
2L	13676145	2L_13676145_SNP [dm3] 2L_13676145_SNP [dm6]	G	A	2.631e^-4	0.815	DOWNSTREAM CG31814 INTERGENIC
3L	8532533	3L_8532533_INS [dm3] 3L_8539433_INS [dm6]	T	TATATATCGGT...	2.646e^-4	0.818	INTERGENIC
2L	15141174	2L_15141174_SNP [dm3] 2L_15141174_SNP [dm6]	T	C	2.652e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14519307	2L_14519307_SNP [dm3] 2L_14519307_SNP [dm6]	C	A	2.656e^-4	0.818	UPSTREAM tRNA:G3:35Bb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2L	15102759	2L_15102759_SNP [dm3] 2L_15102759_SNP [dm6]	A	C	2.659e^-4	0.818	INTERGENIC
3R	16927508	3R_16927508_SNP [dm3] 3R_21101786_SNP [dm6]	C	A	2.667e^-4	0.818	UPSTREAM CG5745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	18244147	2R_18244147_SNP [dm3] 2R_22356642_SNP [dm6]	T	C	2.668e^-4	0.818	INTRON Liprin-gamma
2R	18233744	2R_18233744_INS [dm3] 2R_22346239_INS [dm6]	C	CC	2.673e^-4	0.818	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2L	7963093	2L_7963093_SNP [dm3] 2L_7963093_SNP [dm6]	C	G	2.674e^-4	0.818	INTRON Snoo
3R	12939513	3R_12939513_SNP [dm3] 3R_17113791_SNP [dm6]	G	A	2.682e^-4	0.819	INTRON cher
2L	838191	2L_838191_SNP [dm3] 2L_838191_SNP [dm6]	C	T	2.705e^-4	0.824	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6807508	2L_6807508_SNP [dm3] 2L_6807508_SNP [dm6]	A	G	2.709e^-4	0.824	INTERGENIC
3R	712768	3R_712768_SNP [dm3] 3R_4887046_SNP [dm6]	G	A	2.713e^-4	0.824	INTERGENIC
2L	4131155	2L_4131155_SNP [dm3] 2L_4131155_SNP [dm6]	A	T	2.720e^-4	0.824	INTERGENIC	TF binding site mE1_TFBS_cad
X	2417182	X_2417182_SNP [dm3] X_2523149_SNP [dm6]	C	G	2.726e^-4	0.824	INTRON trol
3R	26163196	3R_26163196_SNP [dm3] 3R_30337474_SNP [dm6]	C	A	2.733e^-4	0.824	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22164627	3R_22164627_SNP [dm3] 3R_26338905_SNP [dm6]	G	T	2.739e^-4	0.824	INTRON CG33970
3L	11709754	3L_11709754_SNP [dm3] 3L_11716654_SNP [dm6]	C	T	2.740e^-4	0.824	INTERGENIC
X	18840613	X_18840613_SNP [dm3] X_18946580_SNP [dm6]	T	C	2.740e^-4	0.824	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18307356	2L_18307356_SNP [dm3] 2L_18307356_SNP [dm6]	T	C	2.756e^-4	0.824	DOWNSTREAM CR43353 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9264234	2L_9264234_SNP [dm3] 2L_9264234_SNP [dm6]	T	G	2.764e^-4	0.824	INTRON Ggamma30A
2L	10805235	2L_10805235_SNP [dm3] 2L_10805235_SNP [dm6]	A	C	2.770e^-4	0.824	INTRON Nos
3R	26193238	3R_26193238_SNP [dm3] 3R_30367516_SNP [dm6]	T	C	2.775e^-4	0.824	UTR_3_PRIME hdc
3R	21051509	3R_21051509_SNP [dm3] 3R_25225787_SNP [dm6]	A	G	2.775e^-4	0.824	SYNONYMOUS_CODING Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8082493	2R_8082493_SNP [dm3] 2R_12194988_SNP [dm6]	T	A	2.779e^-4	0.824	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8087114	2R_8087114_SNP [dm3] 2R_12199609_SNP [dm6]	A	G	2.779e^-4	0.824	UPSTREAM CG8858 & 1 other DOWNSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16877093	3L_16877093_SNP [dm3] 3L_16883993_SNP [dm6]	G	A	2.781e^-4	0.824	SYNONYMOUS_CODING Lmpt
2R	11466797	2R_11466797_SNP [dm3] 2R_15579292_SNP [dm6]	T	C	2.784e^-4	0.824	INTERGENIC
3R	22378924	3R_22378924_SNP [dm3] 3R_26553202_SNP [dm6]	A	T	2.789e^-4	0.824	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14588094	X_14588094_SNP [dm3] X_14694061_SNP [dm6]	T	C	2.789e^-4	0.824	INTRON NetB
4	321693	4_321693_SNP [dm3] 4_301067_SNP [dm6]	C	T	2.790e^-4	0.824	INTRON Syt7
2L	11361108	2L_11361108_SNP [dm3] 2L_11361108_SNP [dm6]	C	G	2.797e^-4	0.825	INTRON salr	regulatory region REDfly_CRMs
3L	2114532	3L_2114532_SNP [dm3] 3L_2114532_SNP [dm6]	T	G	2.804e^-4	0.825	INTRON sls
2L	16437276	2L_16437276_DEL [dm3] 2L_16437276_DEL [dm6]	AATTAGCGCATTTCTATACC...	A	2.808e^-4	0.825	INTRON CG5888
X	13151297	X_13151297_SNP [dm3] X_13257264_SNP [dm6]	G	C	2.821e^-4	0.828	UPSTREAM mew DOWNSTREAM CG15742 INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run
3L	1457448	3L_1457448_SNP [dm3] 3L_1457448_SNP [dm6]	A	T	2.827e^-4	0.828	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	699969	3R_699969_SNP [dm3] 3R_4874247_SNP [dm6]	G	A	2.838e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	18363143	2R_18363143_SNP [dm3] 2R_22475638_SNP [dm6]	T	C	2.838e^-4	0.828	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
3L	6948211	3L_6948211_SNP [dm3] 3L_6955111_SNP [dm6]	C	T	2.839e^-4	0.828	NON_SYNONYMOUS_CODING CG10077 UPSTREAM CG9948	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	18116119	2R_18116119_SNP [dm3] 2R_22228614_SNP [dm6]	C	A	2.847e^-4	0.828	UPSTREAM Oatp58Dc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	558021	3R_558021_SNP [dm3] 3R_4732299_SNP [dm6]	G	A	2.848e^-4	0.828	UPSTREAM Nep2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12357200	3L_12357200_SNP [dm3] 3L_12364100_SNP [dm6]	A	G	2.862e^-4	0.828	INTERGENIC
3R	19055695	3R_19055695_INS [dm3] 3R_23229973_INS [dm6]	AG	TTA	2.862e^-4	0.828	UTR_3_PRIME CG4467
2L	16107548	2L_16107548_SNP [dm3] 2L_16107548_SNP [dm6]	C	G	2.863e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12731468	X_12731468_SNP [dm3] X_12837435_SNP [dm6]	A	C	2.885e^-4	0.832	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9052122	2L_9052122_SNP [dm3] 2L_9052122_SNP [dm6]	T	C	2.886e^-4	0.832	UTR_3_PRIME CG31708
3L	5192362	3L_5192362_SNP [dm3] 3L_5199262_SNP [dm6]	G	A	2.891e^-4	0.832	INTRON shep
3R	16928060	3R_16928060_SNP [dm3] 3R_21102338_SNP [dm6]	C	T	2.895e^-4	0.832	NON_SYNONYMOUS_CODING CG5745 UPSTREAM CG7044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	11603806	X_11603806_SNP [dm3] X_11709773_SNP [dm6]	C	T	2.897e^-4	0.832	UTR_5_PRIME FucT6 DOWNSTREAM Amun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	22212463	X_22212463_SNP [dm3] X_22810627_SNP [dm6]	G	A	2.907e^-4	0.834	SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	6698206	2R_6698206_SNP [dm3] 2R_10810701_SNP [dm6]	C	T	2.914e^-4	0.834	SYNONYMOUS_CODING CG7637 UPSTREAM mms4 DOWNSTREAM CG12935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11637187	2R_11637187_SNP [dm3] 2R_15749682_SNP [dm6]	C	T	2.922e^-4	0.835	INTRON CG30089
2L	18140880	2L_18140880_SNP [dm3] 2L_18140880_SNP [dm6]	G	A	2.925e^-4	0.835	SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23711474	3R_23711474_SNP [dm3] 3R_27885752_SNP [dm6]	C	A	2.939e^-4	0.835	INTRON CG34353
2L	1630179	2L_1630179_SNP [dm3] 2L_1630179_SNP [dm6]	G	A	2.940e^-4	0.835	INTERGENIC
3R	21126467	3R_21126467_SNP [dm3] 3R_25300745_SNP [dm6]	T	A	2.945e^-4	0.835	UPSTREAM CG13659 INTERGENIC
3R	8643863	3R_8643863_SNP [dm3] 3R_12818141_SNP [dm6]	G	C	2.945e^-4	0.835	INTERGENIC
X	2944090	X_2944090_SNP [dm3] X_3050057_SNP [dm6]	A	C	2.964e^-4	0.835	INTRON kirre
3L	18374688	3L_18374688_SNP [dm3] 3L_18381588_SNP [dm6]	G	A	2.968e^-4	0.835	INTERGENIC
3R	10373679	3R_10373679_SNP [dm3] 3R_14547957_SNP [dm6]	C	G	2.970e^-4	0.835	INTRON Pde6
3L	18688923	3L_18688923_SNP [dm3] 3L_18695823_SNP [dm6]	A	T	2.974e^-4	0.835	DOWNSTREAM Dic4 & 1 other INTERGENIC
3L	18688924	3L_18688924_SNP [dm3] 3L_18695824_SNP [dm6]	G	A	2.974e^-4	0.835	DOWNSTREAM Dic4 & 1 other INTERGENIC
3R	24242126	3R_24242126_SNP [dm3] 3R_28416404_SNP [dm6]	G	C	2.984e^-4	0.835	INTERGENIC
3R	21126504	3R_21126504_SNP [dm3] 3R_25300782_SNP [dm6]	C	T	2.988e^-4	0.835	UPSTREAM CG13659 INTERGENIC
X	15485133	X_15485133_SNP [dm3] X_15591100_SNP [dm6]	A	G	2.996e^-4	0.835	INTRON CG9220
X	11626970	X_11626970_SNP [dm3] X_11732937_SNP [dm6]	C	A	2.996e^-4	0.835	UPSTREAM inaF-B INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
X	8389389	X_8389389_SNP [dm3] X_8495356_SNP [dm6]	C	A	2.998e^-4	0.835	INTRON CG33181
3R	8643861	3R_8643861_SNP [dm3] 3R_12818139_SNP [dm6]	G	A	3.000e^-4	0.835	INTERGENIC
2L	5618448	2L_5618448_SNP [dm3] 2L_5618448_SNP [dm6]	G	A	3.005e^-4	0.835	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5378474	2L_5378474_DEL [dm3] 2L_5378474_DEL [dm6]	TAATCATATACAA...	T	3.008e^-4	0.835	DOWNSTREAM CR42850 INTERGENIC
2L	7959009	2L_7959009_SNP [dm3] 2L_7959009_SNP [dm6]	A	G	3.018e^-4	0.835	INTRON Snoo
3L	5002002	3L_5002002_SNP [dm3] 3L_5002002_SNP [dm6]	G	A	3.026e^-4	0.835	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2944062	X_2944062_SNP [dm3] X_3050029_SNP [dm6]	C	G	3.028e^-4	0.835	INTRON kirre
X	13353387	X_13353387_SNP [dm3] X_13459354_SNP [dm6]	T	C	3.032e^-4	0.835	INTRON Neto
2R	17812978	2R_17812978_SNP [dm3] 2R_21925473_SNP [dm6]	G	T	3.035e^-4	0.835	INTRON Fili
2L	838163	2L_838163_SNP [dm3] 2L_838163_SNP [dm6]	G	A	3.053e^-4	0.835	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7442517	3L_7442517_SNP [dm3] 3L_7449417_SNP [dm6]	C	T	3.058e^-4	0.835	INTRON CG42458	TF binding site BDTNP1_TFBS_sna
2R	8059905	2R_8059905_SNP [dm3] 2R_12172400_SNP [dm6]	G	A	3.061e^-4	0.835	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	3054232	3L_3054232_SNP [dm3] 3L_3054232_SNP [dm6]	G	C	3.061e^-4	0.835	SYNONYMOUS_CODING CG1271 UPSTREAM CG16753	TF binding site mE1_TFBS_sens
3L	8201471	3L_8201471_SNP [dm3] 3L_8208371_SNP [dm6]	A	T	3.063e^-4	0.835	INTERGENIC
3R	19266651	3R_19266651_SNP [dm3] 3R_23440929_SNP [dm6]	G	A	3.064e^-4	0.835	INTRON CG4374
2R	9738043	2R_9738043_SNP [dm3] 2R_13850538_SNP [dm6]	T	A	3.065e^-4	0.835	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2R	13717090	2R_13717090_SNP [dm3] 2R_17829585_SNP [dm6]	C	A	3.069e^-4	0.835	INTRON grh	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17356690	2R_17356690_INS [dm3] 2R_21469185_INS [dm6]	G	GG	3.069e^-4	0.835	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	26574284	3R_26574284_SNP [dm3] 3R_30748562_SNP [dm6]	G	A	3.070e^-4	0.835	INTERGENIC
3L	1457450	3L_1457450_SNP [dm3] 3L_1457450_SNP [dm6]	A	C	3.072e^-4	0.835	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2504802	3L_2504802_SNP [dm3] 3L_2504802_SNP [dm6]	T	A	3.082e^-4	0.835	DOWNSTREAM Spn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8305319	3L_8305319_SNP [dm3] 3L_8312219_SNP [dm6]	T	A	3.085e^-4	0.835	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9264202	2L_9264202_SNP [dm3] 2L_9264202_SNP [dm6]	G	A	3.090e^-4	0.835	INTRON Ggamma30A	TF binding site mE1_TFBS_inv
3L	16007823	3L_16007823_SNP [dm3] 3L_16014723_SNP [dm6]	T	G	3.091e^-4	0.835	INTERGENIC
2L	1918878	2L_1918878_SNP [dm3] 2L_1918878_SNP [dm6]	T	C	3.113e^-4	0.837	INTRON CG7337
3R	21125593	3R_21125593_SNP [dm3] 3R_25299871_SNP [dm6]	G	C	3.118e^-4	0.837	UPSTREAM CG31288 INTERGENIC
2L	7959025	2L_7959025_SNP [dm3] 2L_7959025_SNP [dm6]	T	C	3.119e^-4	0.837	INTRON Snoo
X	16861190	X_16861190_SNP [dm3] X_16967157_SNP [dm6]	G	A	3.130e^-4	0.837	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	18363255	X_18363255_SNP [dm3] X_18469222_SNP [dm6]	A	G	3.142e^-4	0.837	INTRON CG32547
2L	14519356	2L_14519356_SNP [dm3] 2L_14519356_SNP [dm6]	T	G	3.155e^-4	0.837	UPSTREAM tRNA:G3:35Bb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	25222445	3R_25222445_SNP [dm3] 3R_29396723_SNP [dm6]	G	T	3.160e^-4	0.837	INTRON Ptp99A
2L	3974151	2L_3974151_SNP [dm3] 2L_3974151_SNP [dm6]	T	A	3.162e^-4	0.837	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1278359	2L_1278359_SNP [dm3] 2L_1278359_SNP [dm6]	G	T	3.163e^-4	0.837	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12369373	X_12369373_SNP [dm3] X_12475340_SNP [dm6]	T	C	3.170e^-4	0.837	INTRON CG42258
2L	15993274	2L_15993274_SNP [dm3] 2L_15993274_SNP [dm6]	T	A	3.175e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18408142	X_18408142_SNP [dm3] X_18514109_SNP [dm6]	G	T	3.177e^-4	0.837	INTRON CG6470
2L	18752178	2L_18752178_SNP [dm3] 2L_18752178_SNP [dm6]	G	C	3.180e^-4	0.837	INTERGENIC
3L	7443578	3L_7443578_SNP [dm3] 3L_7450478_SNP [dm6]	A	G	3.195e^-4	0.837	SYNONYMOUS_CODING CG42458 UPSTREAM CG33278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8704753	X_8704753_SNP [dm3] X_8810720_SNP [dm6]	C	G	3.198e^-4	0.837	INTERGENIC
3L	13287133	3L_13287133_SNP [dm3] 3L_13294033_SNP [dm6]	C	T	3.200e^-4	0.837	INTERGENIC
2L	9876628	2L_9876628_SNP [dm3] 2L_9876628_SNP [dm6]	C	G	3.202e^-4	0.837	INTRON nAChRalpha6
2L	4028426	2L_4028426_SNP [dm3] 2L_4028426_SNP [dm6]	C	G	3.205e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12525826	2L_12525826_SNP [dm3] 2L_12525826_SNP [dm6]	A	T	3.218e^-4	0.837	INTRON bun
2L	15241551	2L_15241551_SNP [dm3] 2L_15241551_SNP [dm6]	T	A	3.224e^-4	0.837	INTRON ZnT35C
3L	7004909	3L_7004909_INS [dm3] 3L_7011809_INS [dm6]	G	GG	3.241e^-4	0.837	INTRON Mp	TF binding site mE1_TFBS_bab1
3L	13433038	3L_13433038_SNP [dm3] 3L_13439938_SNP [dm6]	A	G	3.245e^-4	0.837	SYNONYMOUS_CODING CG10140 UPSTREAM CG14109 DOWNSTREAM CG10725
2R	15095640	2R_15095640_SNP [dm3] 2R_19208135_SNP [dm6]	T	C	3.249e^-4	0.837	INTRON hppy
3R	15311091	3R_15311091_DEL [dm3] 3R_19485369_DEL [dm6]	AAA	A	3.251e^-4	0.837	INTRON Dys
X	4301137	X_4301137_SNP [dm3] X_4407104_SNP [dm6]	G	A	3.252e^-4	0.837	INTRON CR32773
2L	3802724	2L_3802724_SNP [dm3] 2L_3802724_SNP [dm6]	A	T	3.256e^-4	0.837	UTR_3_PRIME CG3921 UPSTREAM Reph	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9738042	2R_9738042_SNP [dm3] 2R_13850537_SNP [dm6]	A	T	3.262e^-4	0.837	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
X	11224959	X_11224959_SNP [dm3] X_11330926_SNP [dm6]	A	C	3.264e^-4	0.837	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12261696	2L_12261696_SNP [dm3] 2L_12261696_SNP [dm6]	A	T	3.269e^-4	0.837	INTRON aret
2L	1183536	2L_1183536_SNP [dm3] 2L_1183536_SNP [dm6]	G	C	3.285e^-4	0.837	NON_SYNONYMOUS_CODING CG5126 UPSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15388782	3R_15388782_SNP [dm3] 3R_19563060_SNP [dm6]	T	A	3.286e^-4	0.837	INTRON Dys
2L	18298591	2L_18298591_SNP [dm3] 2L_18298591_SNP [dm6]	A	G	3.287e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12867587	2L_12867587_SNP [dm3] 2L_12867587_SNP [dm6]	C	T	3.294e^-4	0.837	INTERGENIC
3R	9643020	3R_9643020_SNP [dm3] 3R_13817298_SNP [dm6]	A	T	3.305e^-4	0.837	DOWNSTREAM CR43642 INTERGENIC
3R	9643024	3R_9643024_SNP [dm3] 3R_13817302_SNP [dm6]	A	G	3.305e^-4	0.837	DOWNSTREAM CR43642 INTERGENIC
3R	9643026	3R_9643026_SNP [dm3] 3R_13817304_SNP [dm6]	A	G	3.305e^-4	0.837	DOWNSTREAM CR43642 INTERGENIC
3R	9643028	3R_9643028_SNP [dm3] 3R_13817306_SNP [dm6]	A	G	3.305e^-4	0.837	DOWNSTREAM CR43642 INTERGENIC
2L	9876629	2L_9876629_SNP [dm3] 2L_9876629_SNP [dm6]	T	C	3.313e^-4	0.837	INTRON nAChRalpha6
3R	21434656	3R_21434656_SNP [dm3] 3R_25608934_SNP [dm6]	C	T	3.313e^-4	0.837	DOWNSTREAM msi INTRON ymp
2L	7959092	2L_7959092_SNP [dm3] 2L_7959092_SNP [dm6]	C	T	3.318e^-4	0.837	INTRON Snoo
3L	15263986	3L_15263986_SNP [dm3] 3L_15270886_SNP [dm6]	C	T	3.319e^-4	0.837	INTERGENIC
3R	16927471	3R_16927471_SNP [dm3] 3R_21101749_SNP [dm6]	G	A	3.321e^-4	0.837	UPSTREAM CG5745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	10209773	2L_10209773_SNP [dm3] 2L_10209773_SNP [dm6]	A	G	3.324e^-4	0.837	UPSTREAM CG5731 DOWNSTREAM CG5727 & 1 other EXON CR44845	TF binding site BDTNP1_TFBS_dl
2L	2803079	2L_2803079_SNP [dm3] 2L_2803079_SNP [dm6]	C	T	3.331e^-4	0.837	INTERGENIC
2R	16075404	2R_16075404_SNP [dm3] 2R_20187899_SNP [dm6]	G	A	3.348e^-4	0.837	INTERGENIC
2R	12122804	2R_12122804_SNP [dm3] 2R_16235299_SNP [dm6]	A	G	3.350e^-4	0.837	UPSTREAM CG7786 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9406232	2R_9406232_SNP [dm3] 2R_13518727_SNP [dm6]	G	C	3.358e^-4	0.837	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
2L	5118318	2L_5118318_SNP [dm3] 2L_5118318_SNP [dm6]	T	C	3.365e^-4	0.837	INTRON Msp300
3L	8641680	3L_8641680_SNP [dm3] 3L_8648580_SNP [dm6]	C	G	3.373e^-4	0.837	SYNONYMOUS_CODING Arr2 UPSTREAM Pex7 INTRON Pex7	TF binding site mE1_TFBS_chinmo
2R	18333344	2R_18333344_DEL [dm3] 2R_22445839_DEL [dm6]	GTATA	G	3.381e^-4	0.837	INTERGENIC
2L	12020445	2L_12020445_SNP [dm3] 2L_12020445_SNP [dm6]	C	T	3.383e^-4	0.837	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12357211	3L_12357211_SNP [dm3] 3L_12364111_SNP [dm6]	T	C	3.386e^-4	0.837	INTERGENIC
2L	18298150	2L_18298150_SNP [dm3] 2L_18298150_SNP [dm6]	G	T	3.389e^-4	0.837	DOWNSTREAM CG5790 INTERGENIC
2L	970211	2L_970211_SNP [dm3] 2L_970211_SNP [dm6]	T	A	3.393e^-4	0.837	INTERGENIC
2L	7127526	2L_7127526_SNP [dm3] 2L_7127526_SNP [dm6]	T	C	3.396e^-4	0.837	INTRON Pvf3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15311122	3R_15311122_SNP [dm3] 3R_19485400_SNP [dm6]	T	C	3.407e^-4	0.837	INTRON Dys
3L	12357320	3L_12357320_SNP [dm3] 3L_12364220_SNP [dm6]	A	G	3.410e^-4	0.837	INTERGENIC
3L	7004632	3L_7004632_SNP [dm3] 3L_7011532_SNP [dm6]	T	A	3.418e^-4	0.837	INTRON Mp
2R	8079280	2R_8079280_SNP [dm3] 2R_12191775_SNP [dm6]	G	A	3.422e^-4	0.837	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	981948	3R_981948_SNP [dm3] 3R_5156226_SNP [dm6]	T	G	3.424e^-4	0.837	INTRON dpr16
2R	8921928	2R_8921928_SNP [dm3] 2R_13034423_SNP [dm6]	C	T	3.430e^-4	0.837	INTERGENIC
X	1483506	X_1483506_SNP [dm3] X_1589473_SNP [dm6]	C	T	3.439e^-4	0.837	INTRON br & 1 other
3R	26575164	3R_26575164_SNP [dm3] 3R_30749442_SNP [dm6]	G	A	3.452e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6208026	2R_6208026_SNP [dm3] 2R_10320521_SNP [dm6]	C	G	3.452e^-4	0.837	UPSTREAM CG34222 INTRON Ndg
2L	5378500	2L_5378500_DEL [dm3] 2L_5378500_DEL [dm6]	CATATACA	C	3.454e^-4	0.837	DOWNSTREAM CR42850 INTERGENIC
3R	24692019	3R_24692019_SNP [dm3] 3R_28866297_SNP [dm6]	C	G	3.456e^-4	0.837	INTRON spg
3R	14722500	3R_14722500_MNP [dm3] 3R_18896778_MNP [dm6]	AGC	GCA	3.464e^-4	0.837	INTERGENIC
2R	6012692	2R_6012692_SNP [dm3] 2R_10125187_SNP [dm6]	C	T	3.465e^-4	0.837	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21867421	3R_21867421_SNP [dm3] 3R_26041699_SNP [dm6]	G	A	3.473e^-4	0.837	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
2R	13619417	2R_13619417_SNP [dm3] 2R_17731912_SNP [dm6]	A	G	3.486e^-4	0.837	SYNONYMOUS_CODING CG4984 UTR_3_PRIME CG4975	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13114792	2R_13114792_SNP [dm3] 2R_17227287_SNP [dm6]	C	A	3.493e^-4	0.837	INTRON mbl
3R	15312017	3R_15312017_SNP [dm3] 3R_19486295_SNP [dm6]	G	T	3.493e^-4	0.837	UPSTREAM Dys INTRON Dys
3L	20977175	3L_20977175_SNP [dm3] 3L_20984075_SNP [dm6]	C	A	3.496e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7593582	2L_7593582_SNP [dm3] 2L_7593582_SNP [dm6]	T	C	3.499e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10087090	X_10087090_INS [dm3] X_10193057_INS [dm6]	C	CT	3.504e^-4	0.837	UTR_3_PRIME CG43902 INTRON CR44894
2R	11277790	2R_11277790_SNP [dm3] 2R_15390285_SNP [dm6]	T	G	3.508e^-4	0.837	INTERGENIC
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	3.515e^-4	0.837	INTRON rols
X	12795257	X_12795257_SNP [dm3] X_12901224_SNP [dm6]	A	G	3.520e^-4	0.837	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	1210779	2L_1210779_SNP [dm3] 2L_1210779_SNP [dm6]	C	T	3.533e^-4	0.837	INTERGENIC
X	16844829	X_16844829_SNP [dm3] X_16950796_SNP [dm6]	T	C	3.535e^-4	0.837	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844840	X_16844840_SNP [dm3] X_16950807_SNP [dm6]	G	A	3.535e^-4	0.837	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844844	X_16844844_SNP [dm3] X_16950811_SNP [dm6]	C	G	3.535e^-4	0.837	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3R	24236020	3R_24236020_SNP [dm3] 3R_28410298_SNP [dm6]	A	G	3.537e^-4	0.837	INTERGENIC
2L	11361107	2L_11361107_SNP [dm3] 2L_11361107_SNP [dm6]	C	T	3.539e^-4	0.837	INTRON salr	regulatory region REDfly_CRMs
2R	9441970	2R_9441970_SNP [dm3] 2R_13554465_SNP [dm6]	T	G	3.540e^-4	0.837	SYNONYMOUS_CODING Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23755046	3R_23755046_SNP [dm3] 3R_27929324_SNP [dm6]	T	C	3.543e^-4	0.837	SYNONYMOUS_CODING mino UPSTREAM mino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23858002	3R_23858002_SNP [dm3] 3R_28032280_SNP [dm6]	T	C	3.547e^-4	0.837	INTRON CG34362
3L	909741	3L_909741_SNP [dm3] 3L_909741_SNP [dm6]	G	C	3.551e^-4	0.837	NON_SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7729919	X_7729919_SNP [dm3] X_7835886_SNP [dm6]	C	T	3.554e^-4	0.837	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7985386	X_7985386_SNP [dm3] X_8091353_SNP [dm6]	A	T	3.557e^-4	0.837	INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16927779	3R_16927779_SNP [dm3] 3R_21102057_SNP [dm6]	T	A	3.566e^-4	0.837	UPSTREAM CG5745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25179859	3R_25179859_SNP [dm3] 3R_29354137_SNP [dm6]	C	T	3.568e^-4	0.837	INTERGENIC
3L	7549018	3L_7549018_SNP [dm3] 3L_7555918_SNP [dm6]	T	G	3.573e^-4	0.837	NON_SYNONYMOUS_CODING CG14837
2L	9851857	2L_9851857_INS [dm3] 2L_9851857_INS [dm6]	A	AGAGCTTGCGA...	3.575e^-4	0.837	INTRON nAChRalpha6
2L	7873360	2L_7873360_SNP [dm3] 2L_7873360_SNP [dm6]	A	C	3.575e^-4	0.837	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
X	12291426	X_12291426_SNP [dm3] X_12397393_SNP [dm6]	G	A	3.581e^-4	0.837	INTERGENIC
3R	17369464	3R_17369464_SNP [dm3] 3R_21543742_SNP [dm6]	T	A	3.581e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18423070	2R_18423070_DEL [dm3] 2R_22535565_DEL [dm6]	TGCT	T	3.581e^-4	0.837	INTRON px
X	21384267	X_21384267_SNP [dm3] X_21513240_SNP [dm6]	G	T	3.582e^-4	0.837	INTRON CR45082
2L	8253505	2L_8253505_SNP [dm3] 2L_8253505_SNP [dm6]	A	T	3.589e^-4	0.837	UPSTREAM CG8086 INTRON CG8086
2L	14396070	2L_14396070_SNP [dm3] 2L_14396070_SNP [dm6]	C	A	3.589e^-4	0.837	INTRON elB
3R	21128993	3R_21128993_SNP [dm3] 3R_25303271_SNP [dm6]	C	T	3.595e^-4	0.837	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
3L	10942080	3L_10942080_SNP [dm3] 3L_10948980_SNP [dm6]	A	T	3.602e^-4	0.837	INTERGENIC
2L	17919379	2L_17919379_DEL [dm3] 2L_17919379_DEL [dm6]	AA	A	3.603e^-4	0.837	UPSTREAM CR43274 INTERGENIC
2L	21869399	2L_21869399_SNP [dm3] 2L_21869399_SNP [dm6]	C	T	3.628e^-4	0.837	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5008277	2L_5008277_SNP [dm3] 2L_5008277_SNP [dm6]	C	G	3.632e^-4	0.837	NON_SYNONYMOUS_CODING Rtnl1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10087097	X_10087097_SNP [dm3] X_10193064_SNP [dm6]	T	C	3.645e^-4	0.837	UTR_3_PRIME CG43902 INTRON CR44894
3R	2943767	3R_2943767_SNP [dm3] 3R_7118045_SNP [dm6]	G	A	3.645e^-4	0.837	UPSTREAM Mlp84B INTRON Alh
2L	12335113	2L_12335113_DEL [dm3] 2L_12335113_DEL [dm6]	AACA	A	3.650e^-4	0.837	INTERGENIC
2R	10024495	2R_10024495_SNP [dm3] 2R_14136990_SNP [dm6]	C	A	3.658e^-4	0.837	INTRON Prosap
2R	8063030	2R_8063030_SNP [dm3] 2R_12175525_SNP [dm6]	T	A	3.660e^-4	0.837	INTRON Cct5	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11369347	2R_11369347_SNP [dm3] 2R_15481842_SNP [dm6]	C	A	3.666e^-4	0.837	INTRON CG8180	TF binding site BDTNP1_TFBS_dl
X	12907194	X_12907194_SNP [dm3] X_13013161_SNP [dm6]	C	T	3.674e^-4	0.837	INTRON rad
2L	482894	2L_482894_INS [dm3] 2L_482894_INS [dm6]	C	CC	3.674e^-4	0.837	INTRON ush	TF binding site mE1_TFBS_inv
X	1483375	X_1483375_SNP [dm3] X_1589342_SNP [dm6]	G	C	3.676e^-4	0.837	INTRON br & 1 other
3L	8141805	3L_8141805_SNP [dm3] 3L_8148705_SNP [dm6]	C	A	3.676e^-4	0.837	INTRON CG13676
2L	10440726	2L_10440726_SNP [dm3] 2L_10440726_SNP [dm6]	A	G	3.681e^-4	0.837	UTR_3_PRIME CG13142 DOWNSTREAM CG13142
X	2604667	X_2604667_SNP [dm3] X_2710634_SNP [dm6]	T	C	3.687e^-4	0.837	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15114132	X_15114132_SNP [dm3] X_15220099_SNP [dm6]	G	A	3.702e^-4	0.837	DOWNSTREAM CG43075 INTERGENIC
X	9806189	X_9806189_SNP [dm3] X_9912156_SNP [dm6]	G	A	3.704e^-4	0.837	INTERGENIC
3L	18277857	3L_18277857_SNP [dm3] 3L_18284757_SNP [dm6]	G	C	3.706e^-4	0.837	INTERGENIC
3L	18277870	3L_18277870_DEL [dm3] 3L_18284770_DEL [dm6]	AGTTCTGAAGTT...	G	3.706e^-4	0.837	INTERGENIC
3R	23182961	3R_23182961_SNP [dm3] 3R_27357239_SNP [dm6]	A	T	3.707e^-4	0.837	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5192353	3L_5192353_SNP [dm3] 3L_5199253_SNP [dm6]	T	A	3.713e^-4	0.837	INTRON shep
3R	21453875	3R_21453875_SNP [dm3] 3R_25628153_SNP [dm6]	A	G	3.721e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14541189	X_14541189_SNP [dm3] X_14647156_SNP [dm6]	G	C	3.732e^-4	0.837	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	8078014	2R_8078014_SNP [dm3] 2R_12190509_SNP [dm6]	T	C	3.732e^-4	0.837	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2L	7909624	2L_7909624_SNP [dm3] 2L_7909624_SNP [dm6]	A	C	3.738e^-4	0.837	INTRON Snoo
2L	838169	2L_838169_SNP [dm3] 2L_838169_SNP [dm6]	G	A	3.748e^-4	0.837	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17243671	2L_17243671_SNP [dm3] 2L_17243671_SNP [dm6]	C	A	3.753e^-4	0.837	INTRON beat-IIIc
2L	2459009	2L_2459009_SNP [dm3] 2L_2459009_SNP [dm6]	G	A	3.756e^-4	0.837	UTR_3_PRIME dpp DOWNSTREAM tRNA:Y1:22Fb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	13576499	X_13576499_SNP [dm3] X_13682466_SNP [dm6]	C	T	3.759e^-4	0.837	UPSTREAM CG11158 INTERGENIC
2R	7139118	2R_7139118_SNP [dm3] 2R_11251613_SNP [dm6]	T	C	3.764e^-4	0.837	DOWNSTREAM Cpr47Ea INTRON Or47a
X	8096193	X_8096193_SNP [dm3] X_8202160_SNP [dm6]	A	G	3.766e^-4	0.837	INTRON sdt	TF binding site mE1_TFBS_inv
3R	15311346	3R_15311346_SNP [dm3] 3R_19485624_SNP [dm6]	C	T	3.767e^-4	0.837	SYNONYMOUS_CODING Dys
2R	9449084	2R_9449084_SNP [dm3] 2R_13561579_SNP [dm6]	T	G	3.773e^-4	0.837	DOWNSTREAM CG13334 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E
2L	7873295	2L_7873295_SNP [dm3] 2L_7873295_SNP [dm6]	T	A	3.774e^-4	0.837	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
3L	12357361	3L_12357361_SNP [dm3] 3L_12364261_SNP [dm6]	T	G	3.778e^-4	0.837	INTERGENIC
2L	12343361	2L_12343361_SNP [dm3] 2L_12343361_SNP [dm6]	C	T	3.779e^-4	0.837	UPSTREAM bru-2 DOWNSTREAM CG43813 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14537381	2L_14537381_DEL [dm3] 2L_14537381_DEL [dm6]	AA	A	3.784e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16570011	2R_16570011_SNP [dm3] 2R_20682506_SNP [dm6]	C	T	3.794e^-4	0.837	INTERGENIC
2L	12403614	2L_12403614_SNP [dm3] 2L_12403614_SNP [dm6]	G	A	3.800e^-4	0.837	SYNONYMOUS_CODING vir-1
2L	7957074	2L_7957074_SNP [dm3] 2L_7957074_SNP [dm6]	A	G	3.803e^-4	0.837	INTRON Snoo
X	11600311	X_11600311_DEL [dm3] X_11706278_DEL [dm6]	AAAACAAACTGCCAGTC...	T	3.804e^-4	0.837	UPSTREAM CG2444 DOWNSTREAM FucT6 INTERGENIC
3L	1057735	3L_1057735_SNP [dm3] 3L_1057735_SNP [dm6]	T	G	3.815e^-4	0.837	INTRON bab1
2L	3974152	2L_3974152_SNP [dm3] 2L_3974152_SNP [dm6]	T	A	3.826e^-4	0.837	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3062234	3R_3062234_SNP [dm3] 3R_7236512_SNP [dm6]	G	A	3.828e^-4	0.837	INTRON CG14608
3R	21288616	3R_21288616_SNP [dm3] 3R_25462894_SNP [dm6]	G	A	3.836e^-4	0.837	INTRON Fur1
3R	24112479	3R_24112479_SNP [dm3] 3R_28286757_SNP [dm6]	G	T	3.837e^-4	0.837	INTERGENIC
3R	22163492	3R_22163492_SNP [dm3] 3R_26337770_SNP [dm6]	T	G	3.837e^-4	0.837	INTRON CG33970
3L	18277795	3L_18277795_SNP [dm3] 3L_18284695_SNP [dm6]	C	G	3.850e^-4	0.837	INTERGENIC
2L	14870818	2L_14870818_SNP [dm3] 2L_14870818_SNP [dm6]	T	A	3.860e^-4	0.837	SPLICE_SITE_REGION CG4480 UTR_3_PRIME CG4480 INTRON CG4480
2R	12122809	2R_12122809_SNP [dm3] 2R_16235304_SNP [dm6]	T	C	3.877e^-4	0.837	UPSTREAM CG7786 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10071862	2L_10071862_SNP [dm3] 2L_10071862_SNP [dm6]	T	C	3.878e^-4	0.837	INTRON CG44153
3R	119580	3R_119580_SNP [dm3] 3R_4293858_SNP [dm6]	T	C	3.890e^-4	0.837	NON_SYNONYMOUS_CODING CG9780 INTRON cpx	TF binding site mE1_TFBS_cad
X	10087186	X_10087186_SNP [dm3] X_10193153_SNP [dm6]	C	T	3.890e^-4	0.837	UTR_3_PRIME CG43902 INTRON CR44894
3L	11547359	3L_11547359_SNP [dm3] 3L_11554259_SNP [dm6]	T	C	3.890e^-4	0.837	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18897212	2L_18897212_SNP [dm3] 2L_18897212_SNP [dm6]	G	C	3.900e^-4	0.837	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	18279265	2L_18279265_SNP [dm3] 2L_18279265_SNP [dm6]	G	T	3.908e^-4	0.837	EXON CR44902
3R	25175647	3R_25175647_SNP [dm3] 3R_29349925_SNP [dm6]	G	T	3.914e^-4	0.837	INTERGENIC
3L	8141763	3L_8141763_SNP [dm3] 3L_8148663_SNP [dm6]	G	T	3.923e^-4	0.837	INTRON CG13676
3R	26776545	3R_26776545_SNP [dm3] 3R_30950823_SNP [dm6]	C	G	3.926e^-4	0.837	INTERGENIC
X	7729981	X_7729981_SNP [dm3] X_7835948_SNP [dm6]	G	T	3.930e^-4	0.837	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	720844	3R_720844_SNP [dm3] 3R_4895122_SNP [dm6]	T	C	3.930e^-4	0.837	INTERGENIC
X	1497872	X_1497872_SNP [dm3] X_1603839_SNP [dm6]	G	A	3.932e^-4	0.837	INTRON br & 1 other
2R	8464448	2R_8464448_SNP [dm3] 2R_12576943_SNP [dm6]	C	T	3.939e^-4	0.837	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A
3R	9642840	3R_9642840_SNP [dm3] 3R_13817118_SNP [dm6]	G	T	3.939e^-4	0.837	EXON CR43642
3R	12322490	3R_12322490_SNP [dm3] 3R_16496768_SNP [dm6]	A	T	3.942e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	9193360	X_9193360_SNP [dm3] X_9299327_SNP [dm6]	G	T	3.949e^-4	0.837	INTRON lz
2L	22136513	2L_22136513_SNP [dm3] 2L_22136513_SNP [dm6]	A	G	3.952e^-4	0.837	INTRON CG42748
3R	19253879	3R_19253879_SNP [dm3] 3R_23428157_SNP [dm6]	C	T	3.954e^-4	0.837	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
3L	15423051	3L_15423051_SNP [dm3] 3L_15429951_SNP [dm6]	C	A	3.955e^-4	0.837	INTERGENIC
2L	720463	2L_720463_SNP [dm3] 2L_720463_SNP [dm6]	T	G	3.959e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14770053	3R_14770053_SNP [dm3] 3R_18944331_SNP [dm6]	T	G	3.962e^-4	0.837	INTRON CG42613
3R	13157028	3R_13157028_SNP [dm3] 3R_17331306_SNP [dm6]	T	G	3.964e^-4	0.837	INTRON beat-IIa
2L	18363725	2L_18363725_SNP [dm3] 2L_18363725_SNP [dm6]	T	C	3.972e^-4	0.837	INTRON Fas3
X	21499153	X_21499153_SNP [dm3] X_21628126_SNP [dm6]	T	C	3.982e^-4	0.837	INTRON DIP1	transposable element FlyBase
2L	9762435	2L_9762435_SNP [dm3] 2L_9762435_SNP [dm6]	C	T	3.983e^-4	0.837	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl
3R	25337824	3R_25337824_SNP [dm3] 3R_29512102_SNP [dm6]	A	G	3.983e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19021092	2R_19021092_SNP [dm3] 2R_23133569_SNP [dm6]	T	A	3.984e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7959000	2L_7959000_SNP [dm3] 2L_7959000_SNP [dm6]	A	C	3.988e^-4	0.837	INTRON Snoo
X	1485824	X_1485824_SNP [dm3] X_1591791_SNP [dm6]	T	C	3.989e^-4	0.837	INTRON br & 1 other
2R	18422677	2R_18422677_SNP [dm3] 2R_22535172_SNP [dm6]	T	C	3.995e^-4	0.837	INTRON px
2L	11203809	2L_11203809_SNP [dm3] 2L_11203809_SNP [dm6]	A	T	4.002e^-4	0.837	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20919519	3R_20919519_SNP [dm3] 3R_25093797_SNP [dm6]	C	T	4.005e^-4	0.837	INTERGENIC
X	13353393	X_13353393_SNP [dm3] X_13459360_SNP [dm6]	T	A	4.006e^-4	0.837	INTRON Neto
X	14681362	X_14681362_SNP [dm3] X_14787329_SNP [dm6]	C	A	4.022e^-4	0.837	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
2R	15462537	2R_15462537_SNP [dm3] 2R_19575032_SNP [dm6]	C	A	4.024e^-4	0.837	INTRON sm
3L	7441815	3L_7441815_SNP [dm3] 3L_7448715_SNP [dm6]	T	A	4.035e^-4	0.837	INTRON CG42458
2R	14385711	2R_14385711_SNP [dm3] 2R_18498206_SNP [dm6]	G	C	4.039e^-4	0.837	UPSTREAM CG30116 INTERGENIC
2R	8042347	2R_8042347_SNP [dm3] 2R_12154842_SNP [dm6]	G	A	4.047e^-4	0.837	SYNONYMOUS_CODING Prp8 DOWNSTREAM CG8407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13557860	3R_13557860_SNP [dm3] 3R_17732138_SNP [dm6]	G	A	4.049e^-4	0.837	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11776542	2R_11776542_SNP [dm3] 2R_15889037_SNP [dm6]	C	T	4.060e^-4	0.837	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13157089	3R_13157089_SNP [dm3] 3R_17331367_SNP [dm6]	G	A	4.060e^-4	0.837	INTRON beat-IIa
3R	9058352	3R_9058352_SNP [dm3] 3R_13232630_SNP [dm6]	C	T	4.062e^-4	0.837	INTRON Ace
X	1001757	X_1001757_SNP [dm3] X_1107724_SNP [dm6]	G	A	4.068e^-4	0.837	INTRON CG3655
2L	15903173	2L_15903173_SNP [dm3] 2L_15903173_SNP [dm6]	A	T	4.069e^-4	0.837	UPSTREAM CG31821 INTERGENIC
3L	12611520	3L_12611520_SNP [dm3] 3L_12618420_SNP [dm6]	G	A	4.079e^-4	0.837	SYNONYMOUS_CODING caup
X	2604634	X_2604634_SNP [dm3] X_2710601_SNP [dm6]	A	G	4.079e^-4	0.837	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6612383	2L_6612383_DEL [dm3] 2L_6612383_DEL [dm6]	TTTTCTCAGTCAAATT...	T	4.080e^-4	0.837	INTRON CG11050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	8020495	2R_8020495_SNP [dm3] 2R_12132990_SNP [dm6]	T	C	4.082e^-4	0.837	INTERGENIC
2R	8020497	2R_8020497_SNP [dm3] 2R_12132992_SNP [dm6]	C	T	4.082e^-4	0.837	INTERGENIC
3R	12764650	3R_12764650_SNP [dm3] 3R_16938928_SNP [dm6]	T	A	4.084e^-4	0.837	INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14223336	2L_14223336_DEL [dm3] 2L_14223336_DEL [dm6]	GCCACTCCG	G	4.087e^-4	0.837	INTRON Dyrk2
3L	8305431	3L_8305431_SNP [dm3] 3L_8312331_SNP [dm6]	C	T	4.091e^-4	0.837	SYNONYMOUS_CODING CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24676479	3R_24676479_SNP [dm3] 3R_28850757_SNP [dm6]	G	T	4.098e^-4	0.837	INTRON spg
3L	11518974	3L_11518974_SNP [dm3] 3L_11525874_SNP [dm6]	G	A	4.098e^-4	0.837	INTRON Mob2
X	19703873	X_19703873_SNP [dm3] X_19809840_SNP [dm6]	A	T	4.103e^-4	0.837	INTERGENIC
2L	840796	2L_840796_SNP [dm3] 2L_840796_SNP [dm6]	G	A	4.105e^-4	0.837	INTRON drongo
2L	18300889	2L_18300889_SNP [dm3] 2L_18300889_SNP [dm6]	G	A	4.108e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10284628	3R_10284628_SNP [dm3] 3R_14458906_SNP [dm6]	A	T	4.112e^-4	0.837	INTRON cv-c
2L	6813393	2L_6813393_SNP [dm3] 2L_6813393_SNP [dm6]	G	T	4.113e^-4	0.837	DOWNSTREAM CR44081 INTERGENIC
X	11035514	X_11035514_SNP [dm3] X_11141481_SNP [dm6]	G	A	4.115e^-4	0.837	UPSTREAM CG15199 DOWNSTREAM CR44054 INTRON CG15199
2L	838174	2L_838174_SNP [dm3] 2L_838174_SNP [dm6]	A	G	4.120e^-4	0.837	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	838179	2L_838179_SNP [dm3] 2L_838179_SNP [dm6]	T	C	4.120e^-4	0.837	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18687209	3R_18687209_SNP [dm3] 3R_22861487_SNP [dm6]	C	T	4.127e^-4	0.837	INTERGENIC
2L	18177208	2L_18177208_SNP [dm3] 2L_18177208_SNP [dm6]	G	A	4.133e^-4	0.837	INTRON CG42750	transposable element FlyBase
3R	19536455	3R_19536455_SNP [dm3] 3R_23710733_SNP [dm6]	A	C	4.134e^-4	0.837	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
3R	16927276	3R_16927276_SNP [dm3] 3R_21101554_SNP [dm6]	T	C	4.138e^-4	0.837	NON_SYNONYMOUS_CODING CG7044 UPSTREAM CG5745	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	11523070	3L_11523070_SNP [dm3] 3L_11529970_SNP [dm6]	C	T	4.141e^-4	0.837	INTRON Mob2
2L	12175943	2L_12175943_SNP [dm3] 2L_12175943_SNP [dm6]	T	G	4.149e^-4	0.837	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	7607651	2L_7607651_INS [dm3] 2L_7607651_INS [dm6]	A	AA	4.156e^-4	0.837	UTR_3_PRIME Cyp4d21 UPSTREAM CG6739	TF binding site mE1_TFBS_Trl
2R	8633485	2R_8633485_SNP [dm3] 2R_12745980_SNP [dm6]	C	A	4.159e^-4	0.837	INTRON CG42663	TF binding site mE1_TFBS_cad
3L	5524302	3L_5524302_SNP [dm3] 3L_5531202_SNP [dm6]	C	G	4.162e^-4	0.837	INTERGENIC
3R	24745499	3R_24745499_SNP [dm3] 3R_28919777_SNP [dm6]	A	G	4.162e^-4	0.837	INTRON Doa
3R	23756423	3R_23756423_SNP [dm3] 3R_27930701_SNP [dm6]	T	C	4.162e^-4	0.837	SYNONYMOUS_CODING mino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18408084	X_18408084_SNP [dm3] X_18514051_SNP [dm6]	T	G	4.168e^-4	0.837	INTRON CG6470	TF binding site mE1_TFBS_HSA
X	6205250	X_6205250_DEL [dm3] X_6311217_DEL [dm6]	TGG	C	4.169e^-4	0.837	INTRON CG15894
3L	7549060	3L_7549060_SNP [dm3] 3L_7555960_SNP [dm6]	T	G	4.172e^-4	0.837	NON_SYNONYMOUS_CODING CG14837
2L	518525	2L_518525_SNP [dm3] 2L_518525_SNP [dm6]	G	T	4.173e^-4	0.837	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26663203	3R_26663203_SNP [dm3] 3R_30837481_SNP [dm6]	C	G	4.178e^-4	0.837	INTRON CG15544
2R	17003416	2R_17003416_SNP [dm3] 2R_21115911_SNP [dm6]	G	A	4.183e^-4	0.837	INTRON ktub
3L	12780380	3L_12780380_SNP [dm3] 3L_12787280_SNP [dm6]	T	A	4.191e^-4	0.837	INTRON Atg1
3L	9298926	3L_9298926_SNP [dm3] 3L_9305826_SNP [dm6]	G	A	4.192e^-4	0.837	INTERGENIC
2L	11838895	2L_11838895_SNP [dm3] 2L_11838895_SNP [dm6]	A	T	4.192e^-4	0.837	DOWNSTREAM Sfp33A2 & 1 other INTRON Pde1c
2L	9851686	2L_9851686_SNP [dm3] 2L_9851686_SNP [dm6]	A	C	4.196e^-4	0.837	INTRON nAChRalpha6
X	5513631	X_5513631_SNP [dm3] X_5619598_SNP [dm6]	T	C	4.201e^-4	0.837	UTR_3_PRIME Mlc-c UPSTREAM RhoGAP5A
X	7718012	X_7718012_SNP [dm3] X_7823979_SNP [dm6]	C	A	4.202e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11853481	3L_11853481_SNP [dm3] 3L_11860381_SNP [dm6]	G	A	4.210e^-4	0.837	INTRON CG44837
2L	11881398	2L_11881398_SNP [dm3] 2L_11881398_SNP [dm6]	T	C	4.214e^-4	0.837	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	22162944	3R_22162944_SNP [dm3] 3R_26337222_SNP [dm6]	T	C	4.218e^-4	0.837	INTRON CG33970
2L	7963755	2L_7963755_SNP [dm3] 2L_7963755_SNP [dm6]	G	A	4.226e^-4	0.837	INTRON Snoo
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	4.248e^-4	0.837	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2L	9851621	2L_9851621_SNP [dm3] 2L_9851621_SNP [dm6]	C	A	4.255e^-4	0.837	INTRON nAChRalpha6
X	1484526	X_1484526_SNP [dm3] X_1590493_SNP [dm6]	C	A	4.262e^-4	0.837	INTRON br & 1 other
X	8338231	X_8338231_SNP [dm3] X_8444198_SNP [dm6]	C	A	4.269e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7445090	2R_7445090_SNP [dm3] 2R_11557585_SNP [dm6]	C	G	4.272e^-4	0.837	INTERGENIC
3R	23858056	3R_23858056_SNP [dm3] 3R_28032334_SNP [dm6]	C	T	4.285e^-4	0.837	INTRON CG34362
2L	17175988	2L_17175988_SNP [dm3] 2L_17175988_SNP [dm6]	C	A	4.285e^-4	0.837	UPSTREAM Gr36a EXON CR44394
2R	17021002	2R_17021002_SNP [dm3] 2R_21133497_SNP [dm6]	T	C	4.298e^-4	0.837	INTRON Magi
2R	11133841	2R_11133841_SNP [dm3] 2R_15246336_SNP [dm6]	C	T	4.301e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24676526	3R_24676526_SNP [dm3] 3R_28850804_SNP [dm6]	T	C	4.311e^-4	0.837	INTRON spg
3R	24655458	3R_24655458_SNP [dm3] 3R_28829736_SNP [dm6]	C	A	4.314e^-4	0.837	INTRON WASp
X	6537498	X_6537498_SNP [dm3] X_6643465_SNP [dm6]	G	A	4.315e^-4	0.837	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14588205	X_14588205_SNP [dm3] X_14694172_SNP [dm6]	A	G	4.316e^-4	0.837	INTRON NetB
3R	9066997	3R_9066997_SNP [dm3] 3R_13241275_SNP [dm6]	G	T	4.319e^-4	0.837	INTRON Ace
3L	15992183	3L_15992183_SNP [dm3] 3L_15999083_SNP [dm6]	G	T	4.320e^-4	0.837	INTRON CG5830
3R	21434290	3R_21434290_SNP [dm3] 3R_25608568_SNP [dm6]	A	C	4.324e^-4	0.837	DOWNSTREAM msi INTRON ymp
3R	24690821	3R_24690821_SNP [dm3] 3R_28865099_SNP [dm6]	A	C	4.328e^-4	0.837	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	25513221	3R_25513221_SNP [dm3] 3R_29687499_SNP [dm6]	A	T	4.328e^-4	0.837	UPSTREAM Obp99c INTRON Obp99c
3R	20774723	3R_20774723_SNP [dm3] 3R_24949001_SNP [dm6]	T	A	4.332e^-4	0.837	INTRON CG13646
3R	20774726	3R_20774726_SNP [dm3] 3R_24949004_SNP [dm6]	G	A	4.332e^-4	0.837	INTRON CG13646
2R	20133667	2R_20133667_DEL [dm3] 2R_24246144_DEL [dm6]	ATCCGAGA	A	4.332e^-4	0.837	INTRON nord	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15228909	2L_15228909_SNP [dm3] 2L_15228909_SNP [dm6]	G	A	4.334e^-4	0.837	UTR_3_PRIME ZnT35C
X	14587996	X_14587996_SNP [dm3] X_14693963_SNP [dm6]	A	T	4.336e^-4	0.837	INTRON NetB
3R	10281212	3R_10281212_SNP [dm3] 3R_14455490_SNP [dm6]	G	A	4.340e^-4	0.837	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	8141762	3L_8141762_SNP [dm3] 3L_8148662_SNP [dm6]	G	A	4.341e^-4	0.837	INTRON CG13676
3L	15810237	3L_15810237_SNP [dm3] 3L_15817137_SNP [dm6]	A	C	4.347e^-4	0.837	NON_SYNONYMOUS_CODING CkIIalpha-i1 UPSTREAM fwe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	4797847	3R_4797847_SNP [dm3] 3R_8972125_SNP [dm6]	G	A	4.353e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9817427	3L_9817427_SNP [dm3] 3L_9824327_SNP [dm6]	T	G	4.356e^-4	0.837	UPSTREAM Ilp5 INTRON CG43897
2L	9304587	2L_9304587_SNP [dm3] 2L_9304587_SNP [dm6]	C	G	4.360e^-4	0.837	EXON CR42844
2R	9446806	2R_9446806_SNP [dm3] 2R_13559301_SNP [dm6]	G	A	4.372e^-4	0.837	SYNONYMOUS_CODING CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15345553	2L_15345553_SNP [dm3] 2L_15345553_SNP [dm6]	G	C	4.374e^-4	0.837	INTERGENIC
X	12610421	X_12610421_SNP [dm3] X_12716388_SNP [dm6]	G	C	4.374e^-4	0.837	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15312239	3R_15312239_SNP [dm3] 3R_19486517_SNP [dm6]	G	A	4.376e^-4	0.837	UPSTREAM Dys INTRON Dys
2L	9774212	2L_9774212_SNP [dm3] 2L_9774212_SNP [dm6]	A	G	4.380e^-4	0.837	SYNONYMOUS_CODING ppk11
X	6177769	X_6177769_SNP [dm3] X_6283736_SNP [dm6]	C	T	4.382e^-4	0.837	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21383988	X_21383988_SNP [dm3] X_21512961_SNP [dm6]	G	A	4.392e^-4	0.837	INTRON CR45082
2L	7486300	2L_7486300_SNP [dm3] 2L_7486300_SNP [dm6]	C	A	4.399e^-4	0.837	INTRON Ziz
3L	855101	3L_855101_SNP [dm3] 3L_855101_SNP [dm6]	G	C	4.407e^-4	0.837	INTRON dpr20	TF binding site mE1_TFBS_cad
X	8364333	X_8364333_SNP [dm3] X_8470300_SNP [dm6]	T	G	4.414e^-4	0.837	UPSTREAM Cp7Fa INTRON CG33223
3L	7414485	3L_7414485_SNP [dm3] 3L_7421385_SNP [dm6]	T	A	4.417e^-4	0.837	INTERGENIC
3R	18590337	3R_18590337_SNP [dm3] 3R_22764615_SNP [dm6]	C	A	4.421e^-4	0.837	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11881349	2L_11881349_SNP [dm3] 2L_11881349_SNP [dm6]	A	T	4.439e^-4	0.837	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	7004745	3L_7004745_SNP [dm3] 3L_7011645_SNP [dm6]	A	G	4.461e^-4	0.837	INTRON Mp
2L	4030146	2L_4030146_SNP [dm3] 2L_4030146_SNP [dm6]	C	T	4.465e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9307937	3L_9307937_SNP [dm3] 3L_9314837_SNP [dm6]	T	C	4.468e^-4	0.837	INTERGENIC
2R	8098232	2R_8098232_SNP [dm3] 2R_12210727_SNP [dm6]	G	A	4.472e^-4	0.837	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6673435	3L_6673435_SNP [dm3] 3L_6680335_SNP [dm6]	G	A	4.474e^-4	0.837	INTERGENIC
3R	24690827	3R_24690827_SNP [dm3] 3R_28865105_SNP [dm6]	C	G	4.477e^-4	0.837	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	24501245	3R_24501245_SNP [dm3] 3R_28675523_SNP [dm6]	A	T	4.483e^-4	0.837	UTR_5_PRIME CG9990
2L	840795	2L_840795_SNP [dm3] 2L_840795_SNP [dm6]	A	G	4.485e^-4	0.837	INTRON drongo
X	22110962	X_22110962_DEL [dm3] X_22709126_DEL [dm6]	GG	G	4.500e^-4	0.837	INTRON CR44997	transposable element FlyBase
2R	17328514	2R_17328514_SNP [dm3] 2R_21441009_SNP [dm6]	T	G	4.502e^-4	0.837	INTRON Sdc
3R	22877647	3R_22877647_SNP [dm3] 3R_27051925_SNP [dm6]	C	T	4.508e^-4	0.837	DOWNSTREAM TwdlT INTRON RYa-R
X	9196984	X_9196984_SNP [dm3] X_9302951_SNP [dm6]	T	C	4.510e^-4	0.837	UTR_3_PRIME lz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	9407112	2R_9407112_SNP [dm3] 2R_13519607_SNP [dm6]	G	A	4.511e^-4	0.837	INTRON Vmat	TF binding site mE1_TFBS_cad
X	14588173	X_14588173_SNP [dm3] X_14694140_SNP [dm6]	C	T	4.511e^-4	0.837	INTRON NetB
X	982272	X_982272_SNP [dm3] X_1088239_SNP [dm6]	G	C	4.512e^-4	0.837	INTRON CR44779 & 1 other EXON CR44779
3R	21125238	3R_21125238_SNP [dm3] 3R_25299516_SNP [dm6]	A	T	4.513e^-4	0.837	UTR_5_PRIME CG31288
X	8364336	X_8364336_SNP [dm3] X_8470303_SNP [dm6]	C	T	4.520e^-4	0.837	UPSTREAM Cp7Fa INTRON CG33223
3R	11260799	3R_11260799_SNP [dm3] 3R_15435077_SNP [dm6]	C	A	4.522e^-4	0.837	UPSTREAM CG6118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5299710	2L_5299710_SNP [dm3] 2L_5299710_SNP [dm6]	G	A	4.527e^-4	0.837	UTR_5_PRIME vri INTRON vri
3R	19419451	3R_19419451_SNP [dm3] 3R_23593729_SNP [dm6]	T	G	4.532e^-4	0.837	NON_SYNONYMOUS_CODING CG16723 UPSTREAM CG33337
2L	5378464	2L_5378464_SNP [dm3] 2L_5378464_SNP [dm6]	A	G	4.535e^-4	0.837	DOWNSTREAM CR42850 INTERGENIC
3L	8820235	3L_8820235_SNP [dm3] 3L_8827135_SNP [dm6]	T	G	4.542e^-4	0.837	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

mn_Surv_Azinpho_0_25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results