DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.896e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.09594

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.241	0.0728

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2131 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	20930721	3L_20930721_SNP [dm3] 3L_20937621_SNP [dm6]	T	A	5.313e^-8	0.1	INTRON fng
3R	5014418	3R_5014418_INS [dm3] 3R_9188696_INS [dm6]	A	ATGTTTATGA	6.537e^-7	0.382	INTRON pum
3L	10225308	3L_10225308_SNP [dm3] 3L_10232208_SNP [dm6]	C	T	9.945e^-7	0.382	INTERGENIC
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	1.805e^-6	0.382	SPLICE_SITE_REGION CG30471 INTRON CG30471
2L	16227584	2L_16227584_SNP [dm3] 2L_16227584_SNP [dm6]	T	C	2.070e^-6	0.382	INTERGENIC
3L	10225319	3L_10225319_INS [dm3] 3L_10232219_INS [dm6]	T	TT	2.265e^-6	0.382	INTERGENIC
3L	10225322	3L_10225322_SNP [dm3] 3L_10232222_SNP [dm6]	T	C	2.265e^-6	0.382	INTERGENIC
3L	10225329	3L_10225329_SNP [dm3] 3L_10232229_SNP [dm6]	A	T	2.265e^-6	0.382	INTERGENIC
2L	16227554	2L_16227554_SNP [dm3] 2L_16227554_SNP [dm6]	T	A	2.315e^-6	0.382	INTERGENIC
2R	18865921	2R_18865921_SNP [dm3] 2R_22978398_SNP [dm6]	A	T	2.563e^-6	0.382	INTERGENIC
3R	26168016	3R_26168016_SNP [dm3] 3R_30342294_SNP [dm6]	G	A	2.696e^-6	0.382	INTRON hdc
2L	16227572	2L_16227572_SNP [dm3] 2L_16227572_SNP [dm6]	T	C	2.762e^-6	0.382	INTERGENIC
2L	3665280	2L_3665280_SNP [dm3] 2L_3665280_SNP [dm6]	T	C	3.075e^-6	0.382	INTRON CG34340
3L	17147921	3L_17147921_SNP [dm3] 3L_17154821_SNP [dm6]	T	A	3.135e^-6	0.382	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25446875	3R_25446875_SNP [dm3] 3R_29621153_SNP [dm6]	G	A	3.251e^-6	0.382	DOWNSTREAM CG1907 INTERGENIC
3R	5008299	3R_5008299_SNP [dm3] 3R_9182577_SNP [dm6]	C	T	3.263e^-6	0.382	INTRON pum
3R	15062285	3R_15062285_SNP [dm3] 3R_19236563_SNP [dm6]	G	T	4.021e^-6	0.385	INTRON unc79
3L	10225290	3L_10225290_SNP [dm3] 3L_10232190_SNP [dm6]	C	G	4.024e^-6	0.385	INTERGENIC
3L	10225261	3L_10225261_SNP [dm3] 3L_10232161_SNP [dm6]	C	T	4.246e^-6	0.385	INTERGENIC
3L	10225269	3L_10225269_SNP [dm3] 3L_10232169_SNP [dm6]	G	T	4.246e^-6	0.385	INTERGENIC
2R	18865927	2R_18865927_SNP [dm3] 2R_22978404_SNP [dm6]	T	A	4.308e^-6	0.385	INTERGENIC
3R	15062288	3R_15062288_SNP [dm3] 3R_19236566_SNP [dm6]	A	G	4.840e^-6	0.413	INTRON unc79
3R	5008300	3R_5008300_SNP [dm3] 3R_9182578_SNP [dm6]	T	G	5.830e^-6	0.458	INTRON pum
2R	11423954	2R_11423954_SNP [dm3] 2R_15536449_SNP [dm6]	A	G	5.857e^-6	0.458	INTRON CG30471
2L	11506440	2L_11506440_SNP [dm3] 2L_11506440_SNP [dm6]	T	C	6.391e^-6	0.479	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad
2L	16227582	2L_16227582_SNP [dm3] 2L_16227582_SNP [dm6]	T	G	7.133e^-6	0.483	INTERGENIC
3R	25446874	3R_25446874_SNP [dm3] 3R_29621152_SNP [dm6]	G	C	7.540e^-6	0.483	DOWNSTREAM CG1907 INTERGENIC
X	16950573	X_16950573_SNP [dm3] X_17056540_SNP [dm6]	C	A	7.570e^-6	0.483	INTRON CG45002
2L	16227593	2L_16227593_SNP [dm3] 2L_16227593_SNP [dm6]	A	T	7.702e^-6	0.483	INTERGENIC
3R	5008319	3R_5008319_SNP [dm3] 3R_9182597_SNP [dm6]	A	G	7.726e^-6	0.483	INTRON pum
3L	10225314	3L_10225314_SNP [dm3] 3L_10232214_SNP [dm6]	T	G	9.086e^-6	0.528	INTERGENIC
2L	16227566	2L_16227566_SNP [dm3] 2L_16227566_SNP [dm6]	A	G	9.245e^-6	0.528	INTERGENIC
3R	10544290	3R_10544290_SNP [dm3] 3R_14718568_SNP [dm6]	A	T	9.351e^-6	0.528	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18703035	2R_18703035_SNP [dm3] 2R_22815530_SNP [dm6]	G	A	9.563e^-6	0.528	SYNONYMOUS_CODING stl UPSTREAM CG30271	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	16226132	2L_16226132_SNP [dm3] 2L_16226132_SNP [dm6]	A	G	9.913e^-6	0.531	INTERGENIC
3L	20915635	3L_20915635_SNP [dm3] 3L_20922535_SNP [dm6]	C	G	1.030e^-5	0.537	UPSTREAM CR43929 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7640302	2L_7640302_SNP [dm3] 2L_7640302_SNP [dm6]	T	C	1.154e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22246548	3R_22246548_SNP [dm3] 3R_26420826_SNP [dm6]	G	C	1.180e^-5	0.582	INTERGENIC
3R	4679157	3R_4679157_SNP [dm3] 3R_8853435_SNP [dm6]	T	G	1.306e^-5	0.608	INTRON pyd
X	18371844	X_18371844_INS [dm3] X_18477811_INS [dm6]	A	AGAGGATGCA	1.311e^-5	0.608	INTRON CG32547
X	16611256	X_16611256_SNP [dm3] X_16717223_SNP [dm6]	G	A	1.394e^-5	0.608	INTRON CG34325
X	16611259	X_16611259_SNP [dm3] X_16717226_SNP [dm6]	A	C	1.394e^-5	0.608	INTRON CG34325
X	16611273	X_16611273_SNP [dm3] X_16717240_SNP [dm6]	C	T	1.394e^-5	0.608	INTRON CG34325
2L	6920309	2L_6920309_SNP [dm3] 2L_6920309_SNP [dm6]	T	G	1.536e^-5	0.655	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4206417	2L_4206417_SNP [dm3] 2L_4206417_SNP [dm6]	T	C	1.572e^-5	0.655	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18243744	3L_18243744_DEL [dm3] 3L_18250644_DEL [dm6]	AC	G	1.647e^-5	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9249854	2L_9249854_SNP [dm3] 2L_9249854_SNP [dm6]	C	G	1.718e^-5	0.676	UTR_3_PRIME tai DOWNSTREAM aust
2L	3402485	2L_3402485_SNP [dm3] 2L_3402485_SNP [dm6]	G	A	1.742e^-5	0.676	INTERGENIC
2L	3402468	2L_3402468_SNP [dm3] 2L_3402468_SNP [dm6]	T	C	1.815e^-5	0.676	INTERGENIC
2R	9006819	2R_9006819_SNP [dm3] 2R_13119314_SNP [dm6]	C	G	1.825e^-5	0.676	INTRON CG13325
2L	3402462	2L_3402462_SNP [dm3] 2L_3402462_SNP [dm6]	C	G	1.838e^-5	0.676	INTERGENIC
3L	1434809	3L_1434809_SNP [dm3] 3L_1434809_SNP [dm6]	C	T	1.900e^-5	0.682	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	16415521	2R_16415521_SNP [dm3] 2R_20528016_SNP [dm6]	T	A	1.940e^-5	0.682	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5014472	3R_5014472_SNP [dm3] 3R_9188750_SNP [dm6]	T	G	1.965e^-5	0.682	INTRON pum
2L	8303639	2L_8303639_SNP [dm3] 2L_8303639_SNP [dm6]	C	T	2.039e^-5	0.695	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26809140	3R_26809140_SNP [dm3] 3R_30983418_SNP [dm6]	G	A	2.146e^-5	0.71	INTRON 5-HT7
3L	6281226	3L_6281226_SNP [dm3] 3L_6288126_SNP [dm6]	G	C	2.157e^-5	0.71	INTERGENIC
3L	19542604	3L_19542604_SNP [dm3] 3L_19549504_SNP [dm6]	T	C	2.229e^-5	0.721	SYNONYMOUS_CODING l_3_76BDr
3L	6439151	3L_6439151_SNP [dm3] 3L_6446051_SNP [dm6]	G	A	2.287e^-5	0.721	INTRON CG42747
2L	6698598	2L_6698598_SNP [dm3] 2L_6698598_SNP [dm6]	A	G	2.306e^-5	0.721	INTRON Tsp
2R	18865887	2R_18865887_DEL [dm3] 2R_22978364_DEL [dm6]	ATGAAACG	A	2.493e^-5	0.766	INTERGENIC
3R	5014336	3R_5014336_SNP [dm3] 3R_9188614_SNP [dm6]	C	A	2.772e^-5	0.772	INTRON pum
3R	13673851	3R_13673851_SNP [dm3] 3R_17848129_SNP [dm6]	T	C	2.778e^-5	0.772	INTRON tinc
3L	815344	3L_815344_SNP [dm3] 3L_815344_SNP [dm6]	C	G	2.820e^-5	0.772	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16102008	2R_16102008_SNP [dm3] 2R_20214503_SNP [dm6]	A	C	2.861e^-5	0.772	INTERGENIC
2L	16567044	2L_16567044_SNP [dm3] 2L_16567044_SNP [dm6]	G	A	2.898e^-5	0.772	INTRON CG42389
2L	14170308	2L_14170308_SNP [dm3] 2L_14170308_SNP [dm6]	C	T	2.921e^-5	0.772	INTRON CG43333
2R	11053200	2R_11053200_SNP [dm3] 2R_15165695_SNP [dm6]	T	C	3.078e^-5	0.772	INTRON igl
3R	18441262	3R_18441262_SNP [dm3] 3R_22615540_SNP [dm6]	G	A	3.262e^-5	0.772	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31161
3R	22732730	3R_22732730_DEL [dm3] 3R_26907008_DEL [dm6]	GTACCGCG	G	3.330e^-5	0.772	INTRON T48	regulatory region REDfly_CRMs
2L	9474706	2L_9474706_SNP [dm3] 2L_9474706_SNP [dm6]	G	A	3.416e^-5	0.772	INTERGENIC
3L	14997665	3L_14997665_SNP [dm3] 3L_15004565_SNP [dm6]	T	A	3.489e^-5	0.772	INTRON Reck
2R	9646146	2R_9646146_SNP [dm3] 2R_13758641_SNP [dm6]	T	G	3.491e^-5	0.772	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3402428	2L_3402428_SNP [dm3] 2L_3402428_SNP [dm6]	G	A	3.517e^-5	0.772	INTERGENIC
2L	12153869	2L_12153869_SNP [dm3] 2L_12153869_SNP [dm6]	T	A	3.523e^-5	0.772	SYNONYMOUS_CODING CG31760
3R	6276451	3R_6276451_SNP [dm3] 3R_10450729_SNP [dm6]	A	C	3.552e^-5	0.772	INTERGENIC
3R	4744528	3R_4744528_SNP [dm3] 3R_8918806_SNP [dm6]	G	A	3.580e^-5	0.772	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	9630728	X_9630728_SNP [dm3] X_9736695_SNP [dm6]	C	T	3.584e^-5	0.772	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9970818	3L_9970818_SNP [dm3] 3L_9977718_SNP [dm6]	G	T	3.606e^-5	0.772	INTRON dpr6
3R	10543178	3R_10543178_SNP [dm3] 3R_14717456_SNP [dm6]	T	C	3.628e^-5	0.772	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16611745	X_16611745_SNP [dm3] X_16717712_SNP [dm6]	C	T	3.707e^-5	0.772	INTRON CG34325
3L	18243601	3L_18243601_SNP [dm3] 3L_18250501_SNP [dm6]	G	T	3.780e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18371867	X_18371867_SNP [dm3] X_18477834_SNP [dm6]	T	A	3.804e^-5	0.772	INTRON CG32547
2L	6698602	2L_6698602_SNP [dm3] 2L_6698602_SNP [dm6]	A	C	3.816e^-5	0.772	INTRON Tsp
X	6638260	X_6638260_SNP [dm3] X_6744227_SNP [dm6]	G	C	3.835e^-5	0.772	UTR_5_PRIME RpL17 UPSTREAM snoRNA:Psi28S-1232 & 2 others DOWNSTREAM tRNA:CR32740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	8910839	3L_8910839_SNP [dm3] 3L_8917739_SNP [dm6]	A	G	3.865e^-5	0.772	INTRON Tsp66E
3L	1582237	3L_1582237_SNP [dm3] 3L_1582237_SNP [dm6]	A	G	3.877e^-5	0.772	INTRON CG13917
2R	9886482	2R_9886482_SNP [dm3] 2R_13998977_SNP [dm6]	T	G	3.880e^-5	0.772	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	26808556	3R_26808556_SNP [dm3] 3R_30982834_SNP [dm6]	T	G	3.987e^-5	0.772	INTRON 5-HT7
2L	6515749	2L_6515749_SNP [dm3] 2L_6515749_SNP [dm6]	A	T	3.999e^-5	0.772	INTRON CG31637
3L	10816650	3L_10816650_SNP [dm3] 3L_10823550_SNP [dm6]	G	A	4.033e^-5	0.772	INTERGENIC
2L	9511459	2L_9511459_SNP [dm3] 2L_9511459_SNP [dm6]	G	A	4.074e^-5	0.772	INTRON CG33298	TF binding site mE1_TFBS_sens
2L	9511312	2L_9511312_SNP [dm3] 2L_9511312_SNP [dm6]	T	C	4.075e^-5	0.772	INTRON CG33298
2R	18286941	2R_18286941_SNP [dm3] 2R_22399436_SNP [dm6]	T	C	4.088e^-5	0.772	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	26168020	3R_26168020_SNP [dm3] 3R_30342298_SNP [dm6]	T	C	4.168e^-5	0.772	INTRON hdc
3L	9969042	3L_9969042_INS [dm3] 3L_9975942_INS [dm6]	A	AT	4.227e^-5	0.772	INTRON dpr6
3L	9969086	3L_9969086_SNP [dm3] 3L_9975986_SNP [dm6]	A	G	4.227e^-5	0.772	INTRON dpr6
3L	9969104	3L_9969104_DEL [dm3] 3L_9976004_DEL [dm6]	ACTGT	A	4.227e^-5	0.772	INTRON dpr6
3L	9969111	3L_9969111_SNP [dm3] 3L_9976011_SNP [dm6]	C	T	4.227e^-5	0.772	INTRON dpr6
3R	26814020	3R_26814020_SNP [dm3] 3R_30988298_SNP [dm6]	G	T	4.290e^-5	0.772	INTRON 5-HT7
X	13627906	X_13627906_DEL [dm3] X_13733873_DEL [dm6]	TTT	T	4.340e^-5	0.772	INTRON g	TF binding site mE1_TFBS_sens
2L	3402430	2L_3402430_SNP [dm3] 2L_3402430_SNP [dm6]	T	G	4.423e^-5	0.772	INTERGENIC
3R	10755652	3R_10755652_SNP [dm3] 3R_14929930_SNP [dm6]	C	T	4.529e^-5	0.772	INTERGENIC
3L	9969082	3L_9969082_SNP [dm3] 3L_9975982_SNP [dm6]	G	A	4.537e^-5	0.772	INTRON dpr6
3L	19542387	3L_19542387_SNP [dm3] 3L_19549287_SNP [dm6]	G	C	4.543e^-5	0.772	NON_SYNONYMOUS_CODING l_3_76BDr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5250125	2L_5250125_SNP [dm3] 2L_5250125_SNP [dm6]	A	G	4.596e^-5	0.772	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7874300	3L_7874300_SNP [dm3] 3L_7881200_SNP [dm6]	T	G	4.641e^-5	0.772	INTRON CG32365
3L	8910786	3L_8910786_SNP [dm3] 3L_8917686_SNP [dm6]	T	C	4.647e^-5	0.772	INTRON Tsp66E
2L	11208745	2L_11208745_SNP [dm3] 2L_11208745_SNP [dm6]	C	T	4.652e^-5	0.772	INTERGENIC
3R	5008345	3R_5008345_SNP [dm3] 3R_9182623_SNP [dm6]	T	G	4.700e^-5	0.772	INTRON pum
2R	7052716	2R_7052716_SNP [dm3] 2R_11165211_SNP [dm6]	G	T	4.714e^-5	0.772	INTRON shn & 1 other
3R	10905200	3R_10905200_SNP [dm3] 3R_15079478_SNP [dm6]	C	T	4.740e^-5	0.772	UTR_3_PRIME CG6966 UPSTREAM CG6974 DOWNSTREAM CG6966
3L	10224590	3L_10224590_SNP [dm3] 3L_10231490_SNP [dm6]	A	C	4.791e^-5	0.772	INTERGENIC
2L	1006648	2L_1006648_SNP [dm3] 2L_1006648_SNP [dm6]	A	T	4.838e^-5	0.772	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	14169229	2L_14169229_SNP [dm3] 2L_14169229_SNP [dm6]	A	T	4.913e^-5	0.772	INTRON CG43333
2L	11501599	2L_11501599_SNP [dm3] 2L_11501599_SNP [dm6]	A	C	5.000e^-5	0.772	UPSTREAM spz4 INTERGENIC
2L	10784244	2L_10784244_SNP [dm3] 2L_10784244_SNP [dm6]	T	G	5.062e^-5	0.772	INTRON CG31869
3R	18498005	3R_18498005_SNP [dm3] 3R_22672283_SNP [dm6]	G	T	5.065e^-5	0.772	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8303633	2L_8303633_SNP [dm3] 2L_8303633_SNP [dm6]	C	T	5.087e^-5	0.772	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2798456	3L_2798456_SNP [dm3] 3L_2798456_SNP [dm6]	A	G	5.155e^-5	0.772	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6153898	X_6153898_SNP [dm3] X_6259865_SNP [dm6]	A	C	5.174e^-5	0.772	INTRON schlank
X	14030918	X_14030918_SNP [dm3] X_14136885_SNP [dm6]	T	C	5.208e^-5	0.772	INTERGENIC
X	16350655	X_16350655_SNP [dm3] X_16456622_SNP [dm6]	G	T	5.230e^-5	0.772	UTR_3_PRIME para	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	1063913	2L_1063913_SNP [dm3] 2L_1063913_SNP [dm6]	C	T	5.240e^-5	0.772	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14030919	X_14030919_SNP [dm3] X_14136886_SNP [dm6]	T	C	5.282e^-5	0.772	INTERGENIC
3L	2805475	3L_2805475_SNP [dm3] 3L_2805475_SNP [dm6]	C	T	5.329e^-5	0.772	INTRON CG43444
2L	16235209	2L_16235209_SNP [dm3] 2L_16235209_SNP [dm6]	G	A	5.337e^-5	0.772	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16070158	X_16070158_SNP [dm3] X_16176125_SNP [dm6]	T	C	5.509e^-5	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5991643	3R_5991643_SNP [dm3] 3R_10165921_SNP [dm6]	C	T	5.571e^-5	0.772	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15116477	2L_15116477_SNP [dm3] 2L_15116477_SNP [dm6]	T	C	5.602e^-5	0.772	SYNONYMOUS_CODING stc	TF binding site mE1_TFBS_chinmo
3R	6327756	3R_6327756_SNP [dm3] 3R_10502034_SNP [dm6]	G	T	5.625e^-5	0.772	INTERGENIC
3R	25186410	3R_25186410_INS [dm3] 3R_29360688_INS [dm6]	T	CG	5.661e^-5	0.772	INTERGENIC
X	18672910	X_18672910_SNP [dm3] X_18778877_SNP [dm6]	T	A	5.690e^-5	0.772	UPSTREAM CG6891 INTRON CG6891
3L	8968387	3L_8968387_SNP [dm3] 3L_8975287_SNP [dm6]	T	G	5.698e^-5	0.772	UPSTREAM pix INTRON Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9971686	3L_9971686_SNP [dm3] 3L_9978586_SNP [dm6]	C	T	5.700e^-5	0.772	INTRON dpr6
3L	9971849	3L_9971849_SNP [dm3] 3L_9978749_SNP [dm6]	G	T	5.700e^-5	0.772	INTRON dpr6
X	6153896	X_6153896_SNP [dm3] X_6259863_SNP [dm6]	T	G	5.718e^-5	0.772	INTRON schlank
3R	13895629	3R_13895629_SNP [dm3] 3R_18069907_SNP [dm6]	C	T	5.720e^-5	0.772	INTERGENIC
2L	6922421	2L_6922421_SNP [dm3] 2L_6922421_SNP [dm6]	T	C	5.723e^-5	0.772	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10544242	3R_10544242_SNP [dm3] 3R_14718520_SNP [dm6]	C	A	5.798e^-5	0.774	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11423931	2R_11423931_SNP [dm3] 2R_15536426_SNP [dm6]	C	A	5.841e^-5	0.774	SPLICE_SITE_REGION CG30471 SYNONYMOUS_CODING CG30471
2L	15738600	2L_15738600_SNP [dm3] 2L_15738600_SNP [dm6]	T	C	5.886e^-5	0.774	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11208922	2L_11208922_SNP [dm3] 2L_11208922_SNP [dm6]	G	T	5.947e^-5	0.774	INTERGENIC
3R	17977059	3R_17977059_SNP [dm3] 3R_22151337_SNP [dm6]	T	A	5.955e^-5	0.774	INTRON SKIP
2R	16361255	2R_16361255_SNP [dm3] 2R_20473750_SNP [dm6]	C	T	5.984e^-5	0.774	INTRON CG12484
3L	2175290	3L_2175290_SNP [dm3] 3L_2175290_SNP [dm6]	G	A	6.032e^-5	0.775	UPSTREAM CG15820 INTERGENIC
3R	26595596	3R_26595596_SNP [dm3] 3R_30769874_SNP [dm6]	A	G	6.172e^-5	0.781	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	15529499	2L_15529499_SNP [dm3] 2L_15529499_SNP [dm6]	T	A	6.209e^-5	0.781	INTERGENIC
2L	11928177	2L_11928177_SNP [dm3] 2L_11928177_SNP [dm6]	T	G	6.320e^-5	0.781	INTRON Pde1c	TF binding site mE1_TFBS_inv
X	9630723	X_9630723_SNP [dm3] X_9736690_SNP [dm6]	G	A	6.329e^-5	0.781	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	18180350	X_18180350_SNP [dm3] X_18286317_SNP [dm6]	T	C	6.344e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15865896	3L_15865896_DEL [dm3] 3L_15872796_DEL [dm6]	CTCAC	C	6.381e^-5	0.781	INTRON pHCl
2R	17765379	2R_17765379_SNP [dm3] 2R_21877874_SNP [dm6]	G	T	6.395e^-5	0.781	INTRON Fili	TF binding site mE1_TFBS_cnc
X	9630726	X_9630726_SNP [dm3] X_9736693_SNP [dm6]	T	G	6.413e^-5	0.781	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11813828	2R_11813828_SNP [dm3] 2R_15926323_SNP [dm6]	G	A	6.567e^-5	0.783	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	8303627	2L_8303627_SNP [dm3] 2L_8303627_SNP [dm6]	A	G	6.571e^-5	0.783	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26643585	3R_26643585_SNP [dm3] 3R_30817863_SNP [dm6]	T	C	6.592e^-5	0.783	NON_SYNONYMOUS_CODING cindr UTR_5_PRIME cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2060256	2R_2060256_SNP [dm3] 2R_6172751_SNP [dm6]	A	T	6.662e^-5	0.783	UPSTREAM Cyp6w1 DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
2L	12691988	2L_12691988_SNP [dm3] 2L_12691988_SNP [dm6]	C	G	6.676e^-5	0.783	SYNONYMOUS_CODING CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11163421	2L_11163421_SNP [dm3] 2L_11163421_SNP [dm6]	T	A	6.691e^-5	0.783	INTRON Ca-beta
3R	18498074	3R_18498074_SNP [dm3] 3R_22672352_SNP [dm6]	T	A	6.733e^-5	0.783	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4002211	3L_4002211_SNP [dm3] 3L_4002211_SNP [dm6]	G	T	6.817e^-5	0.783	INTERGENIC
3R	25097241	3R_25097241_SNP [dm3] 3R_29271519_SNP [dm6]	T	C	6.827e^-5	0.783	INTERGENIC	regulatory region REDfly_CRMs
2L	9517589	2L_9517589_SNP [dm3] 2L_9517589_SNP [dm6]	C	T	6.937e^-5	0.783	SYNONYMOUS_CODING CG33298
3L	9969166	3L_9969166_SNP [dm3] 3L_9976066_SNP [dm6]	A	T	6.977e^-5	0.783	INTRON dpr6
3R	22732616	3R_22732616_SNP [dm3] 3R_26906894_SNP [dm6]	T	G	6.980e^-5	0.783	INTRON T48	regulatory region REDfly_CRMs
3L	4008675	3L_4008675_SNP [dm3] 3L_4008675_SNP [dm6]	T	C	6.990e^-5	0.783	INTERGENIC
3L	10366758	3L_10366758_SNP [dm3] 3L_10373658_SNP [dm6]	G	A	7.060e^-5	0.783	INTERGENIC
3R	17141333	3R_17141333_SNP [dm3] 3R_21315611_SNP [dm6]	A	T	7.083e^-5	0.783	EXON Hsromega	TF binding site mE1_TFBS_zfh1
2R	12036474	2R_12036474_INS [dm3] 2R_16148969_INS [dm6]	G	GACAACATTG	7.145e^-5	0.783	UTR_3_PRIME CG10731 UPSTREAM Ext2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	16158210	X_16158210_SNP [dm3] X_16264177_SNP [dm6]	T	C	7.173e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22733063	3R_22733063_SNP [dm3] 3R_26907341_SNP [dm6]	G	A	7.177e^-5	0.783	INTRON T48
3L	14797409	3L_14797409_SNP [dm3] 3L_14804309_SNP [dm6]	C	A	7.258e^-5	0.784	UPSTREAM gnu & 1 other INTERGENIC
2L	9525666	2L_9525666_SNP [dm3] 2L_9525666_SNP [dm6]	C	A	7.367e^-5	0.784	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	16233423	2L_16233423_SNP [dm3] 2L_16233423_SNP [dm6]	G	A	7.371e^-5	0.784	INTRON CG42817
2R	13228054	2R_13228054_SNP [dm3] 2R_17340549_SNP [dm6]	T	A	7.437e^-5	0.784	INTRON mbl
2L	737196	2L_737196_SNP [dm3] 2L_737196_SNP [dm6]	T	C	7.514e^-5	0.784	DOWNSTREAM Eaat2 INTERGENIC
3L	621483	3L_621483_SNP [dm3] 3L_621483_SNP [dm6]	G	C	7.565e^-5	0.784	INTRON CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
X	6478703	X_6478703_INS [dm3] X_6584670_INS [dm6]	A	AG	7.604e^-5	0.784	UTR_3_PRIME CG34417 INTRON CG34417
2L	2021001	2L_2021001_INS [dm3] 2L_2021001_INS [dm6]	C	CCAGCATC	7.612e^-5	0.784	INTRON CG4238
3R	13483825	3R_13483825_DEL [dm3] 3R_17658103_DEL [dm6]	CCTATAAAGTCTCAGTC...	C	7.650e^-5	0.784	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
2L	16228096	2L_16228096_SNP [dm3] 2L_16228096_SNP [dm6]	C	T	7.668e^-5	0.784	INTERGENIC
X	5869210	X_5869210_SNP [dm3] X_5975177_SNP [dm6]	T	C	7.685e^-5	0.784	INTRON Grip
2L	3402481	2L_3402481_SNP [dm3] 2L_3402481_SNP [dm6]	G	A	7.724e^-5	0.784	INTERGENIC
X	12255079	X_12255079_SNP [dm3] X_12361046_SNP [dm6]	T	C	7.735e^-5	0.784	INTERGENIC
3R	25550415	3R_25550415_SNP [dm3] 3R_29724693_SNP [dm6]	T	C	7.801e^-5	0.784	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	13460807	3R_13460807_SNP [dm3] 3R_17635085_SNP [dm6]	C	A	7.852e^-5	0.784	INTRON CG43175
3L	4002196	3L_4002196_SNP [dm3] 3L_4002196_SNP [dm6]	A	C	7.861e^-5	0.784	INTERGENIC
X	20903536	X_20903536_SNP [dm3] X_21032509_SNP [dm6]	C	T	8.050e^-5	0.791	UPSTREAM CG1529 INTERGENIC
X	12869562	X_12869562_DEL [dm3] X_12975529_DEL [dm6]	GACTTGTGT	G	8.077e^-5	0.791	UPSTREAM CR43152 INTRON CG12716
2R	9009881	2R_9009881_SNP [dm3] 2R_13122376_SNP [dm6]	A	G	8.092e^-5	0.791	UTR_5_PRIME CG13325 UPSTREAM CG13325
3R	15612866	3R_15612866_SNP [dm3] 3R_19787144_SNP [dm6]	G	A	8.095e^-5	0.791	INTERGENIC	TF binding site mE1_TFBS_sens
3R	18907922	3R_18907922_SNP [dm3] 3R_23082200_SNP [dm6]	A	T	8.135e^-5	0.791	INTRON CG13830
2R	17987430	2R_17987430_SNP [dm3] 2R_22099925_SNP [dm6]	G	T	8.198e^-5	0.791	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3895309	2L_3895309_SNP [dm3] 2L_3895309_SNP [dm6]	G	T	8.262e^-5	0.791	INTRON capu
3L	3569577	3L_3569577_SNP [dm3] 3L_3569577_SNP [dm6]	T	C	8.293e^-5	0.791	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12923130	2L_12923130_SNP [dm3] 2L_12923130_SNP [dm6]	G	A	8.351e^-5	0.791	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	16566900	2L_16566900_SNP [dm3] 2L_16566900_SNP [dm6]	A	G	8.361e^-5	0.791	INTRON CG42389
2L	7435398	2L_7435398_SNP [dm3] 2L_7435398_SNP [dm6]	T	C	8.416e^-5	0.791	INTERGENIC
3L	9967161	3L_9967161_SNP [dm3] 3L_9974061_SNP [dm6]	C	A	8.467e^-5	0.791	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
3R	6193774	3R_6193774_SNP [dm3] 3R_10368052_SNP [dm6]	G	T	8.527e^-5	0.791	UPSTREAM Rfx INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9967265	3L_9967265_SNP [dm3] 3L_9974165_SNP [dm6]	C	T	8.577e^-5	0.791	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
3R	10306503	3R_10306503_SNP [dm3] 3R_14480781_SNP [dm6]	G	T	8.596e^-5	0.791	START_GAINED cv-c UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7872992	3L_7872992_SNP [dm3] 3L_7879892_SNP [dm6]	C	A	8.643e^-5	0.791	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9250614	2L_9250614_SNP [dm3] 2L_9250614_SNP [dm6]	G	A	8.843e^-5	0.791	NON_SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA
2L	1054877	2L_1054877_SNP [dm3] 2L_1054877_SNP [dm6]	C	A	8.851e^-5	0.791	INTRON S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8968418	3L_8968418_SNP [dm3] 3L_8975318_SNP [dm6]	G	A	8.940e^-5	0.791	SPLICE_SITE_REGION Srp68 UPSTREAM pix INTRON Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6234699	2L_6234699_SNP [dm3] 2L_6234699_SNP [dm6]	C	A	8.960e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9962740	3L_9962740_SNP [dm3] 3L_9969640_SNP [dm6]	T	C	8.986e^-5	0.791	INTRON Nc
3L	13284622	3L_13284622_SNP [dm3] 3L_13291522_SNP [dm6]	A	T	9.021e^-5	0.791	EXON CR43912
2L	6922844	2L_6922844_INS [dm3] 2L_6922844_INS [dm6]	A	AA	9.071e^-5	0.791	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17987285	2R_17987285_SNP [dm3] 2R_22099780_SNP [dm6]	A	G	9.088e^-5	0.791	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16950597	X_16950597_DEL [dm3] X_17056564_DEL [dm6]	ACA	A	9.092e^-5	0.791	INTRON CG45002
3R	18441373	3R_18441373_SNP [dm3] 3R_22615651_SNP [dm6]	C	A	9.130e^-5	0.791	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31161
2L	6923109	2L_6923109_DEL [dm3] 2L_6923109_DEL [dm6]	TAC	T	9.160e^-5	0.791	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14852025	2L_14852025_SNP [dm3] 2L_14852025_SNP [dm6]	T	A	9.259e^-5	0.791	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	22732726	3R_22732726_SNP [dm3] 3R_26907004_SNP [dm6]	T	C	9.283e^-5	0.791	INTRON T48	regulatory region REDfly_CRMs
2L	6287466	2L_6287466_SNP [dm3] 2L_6287466_SNP [dm6]	G	A	9.396e^-5	0.791	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
2L	9236488	2L_9236488_SNP [dm3] 2L_9236488_SNP [dm6]	A	G	9.420e^-5	0.791	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	9390404	2L_9390404_SNP [dm3] 2L_9390404_SNP [dm6]	T	C	9.437e^-5	0.791	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
2L	9511315	2L_9511315_SNP [dm3] 2L_9511315_SNP [dm6]	A	C	9.445e^-5	0.791	INTRON CG33298
X	6279531	X_6279531_SNP [dm3] X_6385498_SNP [dm6]	C	A	9.451e^-5	0.791	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26811009	3R_26811009_INS [dm3] 3R_30985287_INS [dm6]	A	AA	9.550e^-5	0.791	INTRON 5-HT7
3R	21527804	3R_21527804_DEL [dm3] 3R_25702082_DEL [dm6]	TGTGCCTT	T	9.560e^-5	0.791	INTRON LpR2
X	18387148	X_18387148_SNP [dm3] X_18493115_SNP [dm6]	T	A	9.650e^-5	0.791	DOWNSTREAM CG15043 INTERGENIC
3L	11909129	3L_11909129_SNP [dm3] 3L_11916029_SNP [dm6]	A	T	9.715e^-5	0.791	INTRON CG44837
3L	8030017	3L_8030017_SNP [dm3] 3L_8036917_SNP [dm6]	G	A	9.733e^-5	0.791	INTRON nmo	TF binding site mE1_TFBS_inv
3L	13284610	3L_13284610_SNP [dm3] 3L_13291510_SNP [dm6]	T	C	9.775e^-5	0.791	EXON CR43912
3R	13259869	3R_13259869_SNP [dm3] 3R_17434147_SNP [dm6]	C	G	9.814e^-5	0.791	INTRON CG5873 & 1 other
X	18913548	X_18913548_DEL [dm3] X_19019515_DEL [dm6]	GGCCAAGTTACTGTATAA...	G	9.894e^-5	0.791	INTRON CG43759
2L	15043974	2L_15043974_SNP [dm3] 2L_15043974_SNP [dm6]	G	C	9.942e^-5	0.791	DOWNSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1692325	3L_1692325_SNP [dm3] 3L_1692325_SNP [dm6]	A	G	9.950e^-5	0.791	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16253309	2L_16253309_SNP [dm3] 2L_16253309_SNP [dm6]	G	T	9.978e^-5	0.791	INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26811988	3R_26811988_SNP [dm3] 3R_30986266_SNP [dm6]	T	C	1.011e^-4	0.791	INTRON 5-HT7
3R	25097435	3R_25097435_SNP [dm3] 3R_29271713_SNP [dm6]	T	G	1.015e^-4	0.791	INTERGENIC	regulatory region REDfly_CRMs
2L	14852089	2L_14852089_DEL [dm3] 2L_14852089_DEL [dm6]	TGAACAAGA	T	1.017e^-4	0.791	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14852099	2L_14852099_SNP [dm3] 2L_14852099_SNP [dm6]	G	T	1.017e^-4	0.791	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14852102	2L_14852102_SNP [dm3] 2L_14852102_SNP [dm6]	A	G	1.017e^-4	0.791	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2893037	3L_2893037_SNP [dm3] 3L_2893037_SNP [dm6]	G	T	1.026e^-4	0.791	UPSTREAM spz5 INTERGENIC
3L	9967129	3L_9967129_SNP [dm3] 3L_9974029_SNP [dm6]	A	G	1.027e^-4	0.791	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
2L	9391488	2L_9391488_DEL [dm3] 2L_9391488_DEL [dm6]	TACTTAGGTGCTCT...	T	1.027e^-4	0.791	UTR_3_PRIME Aldh INTRON Shawl
2L	14689599	2L_14689599_SNP [dm3] 2L_14689599_SNP [dm6]	A	T	1.030e^-4	0.791	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26580429	3R_26580429_SNP [dm3] 3R_30754707_SNP [dm6]	T	G	1.032e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1611356	2L_1611356_SNP [dm3] 2L_1611356_SNP [dm6]	T	A	1.037e^-4	0.791	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	732238	2L_732238_SNP [dm3] 2L_732238_SNP [dm6]	T	C	1.039e^-4	0.791	INTERGENIC
3L	8910787	3L_8910787_SNP [dm3] 3L_8917687_SNP [dm6]	C	A	1.048e^-4	0.791	INTRON Tsp66E
3R	5733186	3R_5733186_SNP [dm3] 3R_9907464_SNP [dm6]	T	G	1.048e^-4	0.791	INTRON Glut4EF
2L	743842	2L_743842_SNP [dm3] 2L_743842_SNP [dm6]	G	A	1.049e^-4	0.791	INTRON Eaat2
2L	15093724	2L_15093724_SNP [dm3] 2L_15093724_SNP [dm6]	C	T	1.050e^-4	0.791	INTRON CG15270
2L	9279792	2L_9279792_SNP [dm3] 2L_9279792_SNP [dm6]	C	T	1.060e^-4	0.795	INTRON Ggamma30A
3R	8889443	3R_8889443_SNP [dm3] 3R_13063721_SNP [dm6]	T	A	1.065e^-4	0.796	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10777120	3L_10777120_SNP [dm3] 3L_10784020_SNP [dm6]	T	A	1.093e^-4	0.811	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22918865	3R_22918865_SNP [dm3] 3R_27093143_SNP [dm6]	G	T	1.098e^-4	0.811	UTR_5_PRIME CG14258
3R	12911121	3R_12911121_INS [dm3] 3R_17085399_INS [dm6]	G	GGTTT	1.100e^-4	0.811	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8631891	2L_8631891_SNP [dm3] 2L_8631891_SNP [dm6]	T	C	1.104e^-4	0.811	INTRON Sema-1a
3R	13259866	3R_13259866_SNP [dm3] 3R_17434144_SNP [dm6]	C	T	1.107e^-4	0.811	INTRON CG5873 & 1 other
2L	21003924	2L_21003924_SNP [dm3] 2L_21003924_SNP [dm6]	G	A	1.131e^-4	0.817	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	20236909	3R_20236909_SNP [dm3] 3R_24411187_SNP [dm6]	C	T	1.135e^-4	0.817	INTRON nAChRalpha1
3L	18804950	3L_18804950_SNP [dm3] 3L_18811850_SNP [dm6]	T	C	1.136e^-4	0.817	INTRON CG14073
2L	737777	2L_737777_SNP [dm3] 2L_737777_SNP [dm6]	A	G	1.137e^-4	0.817	UTR_3_PRIME Eaat2
X	6149552	X_6149552_SNP [dm3] X_6255519_SNP [dm6]	T	G	1.142e^-4	0.817	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12930684	3R_12930684_SNP [dm3] 3R_17104962_SNP [dm6]	C	T	1.142e^-4	0.817	INTRON cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18712032	2R_18712032_SNP [dm3] 2R_22824509_SNP [dm6]	A	T	1.147e^-4	0.817	UPSTREAM CG30274 & 1 other INTRON CG42284
X	11557146	X_11557146_SNP [dm3] X_11663113_SNP [dm6]	T	A	1.150e^-4	0.817	INTRON Ptp10D
2R	3912851	2R_3912851_SNP [dm3] 2R_8025346_SNP [dm6]	G	T	1.161e^-4	0.821	EXON CR45267	TF binding site BDTNP1_TFBS_prd
3L	9969143	3L_9969143_SNP [dm3] 3L_9976043_SNP [dm6]	T	G	1.165e^-4	0.821	INTRON dpr6
2R	11813822	2R_11813822_SNP [dm3] 2R_15926317_SNP [dm6]	C	T	1.174e^-4	0.822	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	11103519	2L_11103519_SNP [dm3] 2L_11103519_SNP [dm6]	C	T	1.175e^-4	0.822	INTRON Reps
2L	11498061	2L_11498061_SNP [dm3] 2L_11498061_SNP [dm6]	A	G	1.187e^-4	0.824	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19353749	3R_19353749_SNP [dm3] 3R_23528027_SNP [dm6]	T	C	1.188e^-4	0.824	UPSTREAM CG10175 INTRON CG10175
3L	20672323	3L_20672323_SNP [dm3] 3L_20679223_SNP [dm6]	C	T	1.207e^-4	0.824	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8617661	2R_8617661_SNP [dm3] 2R_12730156_SNP [dm6]	T	A	1.209e^-4	0.824	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2L	14852108	2L_14852108_DEL [dm3] 2L_14852108_DEL [dm6]	TT	T	1.209e^-4	0.824	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14852015	2L_14852015_SNP [dm3] 2L_14852015_SNP [dm6]	C	T	1.211e^-4	0.824	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9804561	2R_9804561_SNP [dm3] 2R_13917056_SNP [dm6]	G	A	1.212e^-4	0.824	INTRON shot
3L	6847854	3L_6847854_SNP [dm3] 3L_6854754_SNP [dm6]	A	G	1.217e^-4	0.824	INTERGENIC
2L	13882361	2L_13882361_SNP [dm3] 2L_13882361_SNP [dm6]	T	C	1.218e^-4	0.824	INTRON CenG1A
2L	14852111	2L_14852111_SNP [dm3] 2L_14852111_SNP [dm6]	G	A	1.223e^-4	0.825	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14309250	2L_14309250_SNP [dm3] 2L_14309250_SNP [dm6]	A	T	1.240e^-4	0.834	INTRON wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	5009953	3R_5009953_SNP [dm3] 3R_9184231_SNP [dm6]	C	A	1.256e^-4	0.836	INTRON pum	TF binding site mE1_TFBS_inv
2L	7435395	2L_7435395_DEL [dm3] 2L_7435395_DEL [dm6]	TA	T	1.266e^-4	0.836	INTERGENIC
3R	11195001	3R_11195001_SNP [dm3] 3R_15369279_SNP [dm6]	G	A	1.278e^-4	0.836	SYNONYMOUS_CODING CG14868 DOWNSTREAM CG6136	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3322551	2L_3322551_SNP [dm3] 2L_3322551_SNP [dm6]	C	T	1.279e^-4	0.836	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9505103	2L_9505103_SNP [dm3] 2L_9505103_SNP [dm6]	T	C	1.292e^-4	0.836	INTRON CG33298
3L	8799515	3L_8799515_SNP [dm3] 3L_8806415_SNP [dm6]	C	T	1.294e^-4	0.836	NON_SYNONYMOUS_CODING CG13312 SPLICE_SITE_REGION CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	10224499	3L_10224499_SNP [dm3] 3L_10231399_SNP [dm6]	T	A	1.296e^-4	0.836	INTERGENIC
2R	19503710	2R_19503710_SNP [dm3] 2R_23616187_SNP [dm6]	T	C	1.299e^-4	0.836	INTRON CG17664
2L	6920425	2L_6920425_SNP [dm3] 2L_6920425_SNP [dm6]	A	G	1.302e^-4	0.836	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10865594	2R_10865594_SNP [dm3] 2R_14978089_SNP [dm6]	A	C	1.305e^-4	0.836	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	2180842	2L_2180842_DEL [dm3] 2L_2180842_DEL [dm6]	TATGT	T	1.309e^-4	0.836	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16183707	X_16183707_SNP [dm3] X_16289674_SNP [dm6]	A	T	1.313e^-4	0.836	INTRON caz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_zfh1
3L	5224153	3L_5224153_SNP [dm3] 3L_5231053_SNP [dm6]	A	T	1.317e^-4	0.836	INTRON shep
2R	11887658	2R_11887658_SNP [dm3] 2R_16000153_SNP [dm6]	A	G	1.319e^-4	0.836	UTR_5_PRIME ATPCL INTRON ATPCL	TF binding site BDTNP1_TFBS_z
3R	25862161	3R_25862161_SNP [dm3] 3R_30036439_SNP [dm6]	C	T	1.325e^-4	0.836	SYNONYMOUS_CODING CG7928 DOWNSTREAM ocn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5406022	2L_5406022_SNP [dm3] 2L_5406022_SNP [dm6]	A	T	1.330e^-4	0.836	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9248038	2L_9248038_SNP [dm3] 2L_9248038_SNP [dm6]	A	T	1.333e^-4	0.836	UTR_3_PRIME tai DOWNSTREAM tai
3L	2646271	3L_2646271_SNP [dm3] 3L_2646271_SNP [dm6]	C	A	1.333e^-4	0.836	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4655367	2R_4655367_SNP [dm3] 2R_8767862_SNP [dm6]	G	A	1.335e^-4	0.836	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3322572	2L_3322572_SNP [dm3] 2L_3322572_SNP [dm6]	C	G	1.341e^-4	0.836	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17397171	3L_17397171_INS [dm3] 3L_17404071_INS [dm6]	T	TAT	1.348e^-4	0.836	UPSTREAM blot INTRON blot
X	12255059	X_12255059_SNP [dm3] X_12361026_SNP [dm6]	C	A	1.352e^-4	0.836	INTERGENIC
3L	20914199	3L_20914199_SNP [dm3] 3L_20921099_SNP [dm6]	A	T	1.352e^-4	0.836	DOWNSTREAM CR43929 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14852026	2L_14852026_SNP [dm3] 2L_14852026_SNP [dm6]	T	A	1.359e^-4	0.836	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12869831	X_12869831_SNP [dm3] X_12975798_SNP [dm6]	A	T	1.363e^-4	0.836	INTRON CG12716	TF binding site mE1_TFBS_inv
2L	6922537	2L_6922537_SNP [dm3] 2L_6922537_SNP [dm6]	A	T	1.364e^-4	0.836	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	3318168	2L_3318168_SNP [dm3] 2L_3318168_SNP [dm6]	T	C	1.364e^-4	0.836	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
2L	7841890	2L_7841890_DEL [dm3] 2L_7841890_DEL [dm6]	GGACTC	TTTT	1.373e^-4	0.837	DOWNSTREAM CG14537 INTERGENIC
3R	15142013	3R_15142013_SNP [dm3] 3R_19316291_SNP [dm6]	C	A	1.374e^-4	0.837	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14791911	X_14791911_SNP [dm3] X_14897878_SNP [dm6]	A	C	1.380e^-4	0.837	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9572586	2R_9572586_SNP [dm3] 2R_13685081_SNP [dm6]	G	T	1.386e^-4	0.837	INTRON fas
3L	16123544	3L_16123544_SNP [dm3] 3L_16130444_SNP [dm6]	A	T	1.388e^-4	0.837	DOWNSTREAM Trs20 INTRON SsRbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	16087471	X_16087471_SNP [dm3] X_16193438_SNP [dm6]	T	G	1.396e^-4	0.839	INTERGENIC
2R	13341145	2R_13341145_SNP [dm3] 2R_17453640_SNP [dm6]	T	A	1.412e^-4	0.841	INTRON CG10764
2L	5476475	2L_5476475_SNP [dm3] 2L_5476475_SNP [dm6]	C	G	1.413e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12314906	3L_12314906_SNP [dm3] 3L_12321806_SNP [dm6]	C	T	1.415e^-4	0.841	INTERGENIC
2L	7839850	2L_7839850_SNP [dm3] 2L_7839850_SNP [dm6]	C	T	1.425e^-4	0.841	UPSTREAM CG14537 EXON CR43100
2L	16234920	2L_16234920_SNP [dm3] 2L_16234920_SNP [dm6]	T	C	1.428e^-4	0.841	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	735632	2L_735632_SNP [dm3] 2L_735632_SNP [dm6]	G	A	1.432e^-4	0.841	INTERGENIC
X	13266958	X_13266958_SNP [dm3] X_13372925_SNP [dm6]	C	T	1.434e^-4	0.841	UPSTREAM CG1640 INTRON CG1640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11909135	3L_11909135_SNP [dm3] 3L_11916035_SNP [dm6]	T	A	1.435e^-4	0.841	INTRON CG44837
3L	9967231	3L_9967231_SNP [dm3] 3L_9974131_SNP [dm6]	G	T	1.464e^-4	0.855	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
X	19708944	X_19708944_SNP [dm3] X_19814911_SNP [dm6]	C	T	1.480e^-4	0.855	INTERGENIC
X	18672375	X_18672375_SNP [dm3] X_18778342_SNP [dm6]	A	T	1.484e^-4	0.855	INTRON CG6891
2L	14852085	2L_14852085_SNP [dm3] 2L_14852085_SNP [dm6]	A	T	1.489e^-4	0.855	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10300280	3R_10300280_SNP [dm3] 3R_14474558_SNP [dm6]	A	G	1.492e^-4	0.855	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	2659675	3R_2659675_SNP [dm3] 3R_6833953_SNP [dm6]	T	C	1.508e^-4	0.855	INTRON Scr	regulatory region REDfly_CRMs
3L	6800574	3L_6800574_SNP [dm3] 3L_6807474_SNP [dm6]	G	A	1.520e^-4	0.855	INTERGENIC
3L	17157749	3L_17157749_SNP [dm3] 3L_17164649_SNP [dm6]	T	A	1.521e^-4	0.855	INTRON Rbp6
X	17423444	X_17423444_SNP [dm3] X_17529411_SNP [dm6]	C	T	1.528e^-4	0.855	INTRON CG43658
3L	9844111	3L_9844111_SNP [dm3] 3L_9851011_SNP [dm6]	A	C	1.534e^-4	0.855	INTRON RasGAP1	TF binding site mE1_TFBS_cad
3L	11844599	3L_11844599_SNP [dm3] 3L_11851499_SNP [dm6]	G	T	1.540e^-4	0.855	UTR_3_PRIME CG44837
2L	737365	2L_737365_SNP [dm3] 2L_737365_SNP [dm6]	G	C	1.550e^-4	0.855	UTR_3_PRIME Eaat2
3L	15324421	3L_15324421_SNP [dm3] 3L_15331321_SNP [dm6]	A	T	1.553e^-4	0.855	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11163433	2L_11163433_SNP [dm3] 2L_11163433_SNP [dm6]	G	A	1.569e^-4	0.855	INTRON Ca-beta
3R	5996813	3R_5996813_SNP [dm3] 3R_10171091_SNP [dm6]	T	G	1.570e^-4	0.855	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11803354	2R_11803354_SNP [dm3] 2R_15915849_SNP [dm6]	A	G	1.572e^-4	0.855	UPSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_Trl
3R	24130741	3R_24130741_SNP [dm3] 3R_28305019_SNP [dm6]	G	A	1.575e^-4	0.855	UPSTREAM CG12516 INTERGENIC
X	11938516	X_11938516_DEL [dm3] X_12044483_DEL [dm6]	CGAGAAAC	C	1.575e^-4	0.855	INTRON CR43960 & 1 other
2L	6920247	2L_6920247_SNP [dm3] 2L_6920247_SNP [dm6]	A	G	1.581e^-4	0.855	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14282966	2R_14282966_SNP [dm3] 2R_18395461_SNP [dm6]	A	G	1.585e^-4	0.855	DOWNSTREAM Idgf5 INTERGENIC
3R	21848182	3R_21848182_SNP [dm3] 3R_26022460_SNP [dm6]	A	G	1.585e^-4	0.855	SYNONYMOUS_CODING E_spl_m3-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9249386	2L_9249386_SNP [dm3] 2L_9249386_SNP [dm6]	G	T	1.585e^-4	0.855	UTR_3_PRIME tai DOWNSTREAM aust	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	15646199	3R_15646199_SNP [dm3] 3R_19820477_SNP [dm6]	G	A	1.586e^-4	0.855	INTRON bnl	TF binding site mE1_TFBS_chinmo
3L	9295083	3L_9295083_SNP [dm3] 3L_9301983_SNP [dm6]	T	C	1.586e^-4	0.855	INTERGENIC
2L	12691834	2L_12691834_SNP [dm3] 2L_12691834_SNP [dm6]	A	G	1.586e^-4	0.855	SYNONYMOUS_CODING CG5525	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8968438	3L_8968438_SNP [dm3] 3L_8975338_SNP [dm6]	T	A	1.588e^-4	0.855	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26482461	3R_26482461_SNP [dm3] 3R_30656739_SNP [dm6]	T	C	1.614e^-4	0.855	INTERGENIC
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	1.618e^-4	0.855	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20760670	2L_20760670_SNP [dm3] 2L_20760670_SNP [dm6]	G	T	1.626e^-4	0.855	NON_SYNONYMOUS_CODING dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22910884	3R_22910884_SNP [dm3] 3R_27085162_SNP [dm6]	C	T	1.628e^-4	0.855	INTRON Cpr97Ea
3R	14463362	3R_14463362_SNP [dm3] 3R_18637640_SNP [dm6]	T	C	1.629e^-4	0.855	INTRON qin & 1 other
3R	5008714	3R_5008714_SNP [dm3] 3R_9182992_SNP [dm6]	A	G	1.631e^-4	0.855	INTRON pum
3R	22228954	3R_22228954_SNP [dm3] 3R_26403232_SNP [dm6]	A	T	1.633e^-4	0.855	SPLICE_SITE_REGION ppk15 INTRON ppk15
3R	22229218	3R_22229218_SNP [dm3] 3R_26403496_SNP [dm6]	G	A	1.633e^-4	0.855	INTRON ppk15
3R	27172107	3R_27172107_DEL [dm3] 3R_31346385_DEL [dm6]	TACCAGT	T	1.634e^-4	0.855	INTRON CG34347
3L	16923069	3L_16923069_SNP [dm3] 3L_16929969_SNP [dm6]	G	A	1.639e^-4	0.855	UTR_3_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18197988	2L_18197988_SNP [dm3] 2L_18197988_SNP [dm6]	A	G	1.643e^-4	0.855	INTRON CG42750
X	18671543	X_18671543_SNP [dm3] X_18777510_SNP [dm6]	T	C	1.648e^-4	0.855	INTRON CG6891
3L	6854596	3L_6854596_SNP [dm3] 3L_6861496_SNP [dm6]	C	A	1.649e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20474872	X_20474872_SNP [dm3] X_20603845_SNP [dm6]	G	A	1.663e^-4	0.855	INTRON RunxA
3R	19353746	3R_19353746_SNP [dm3] 3R_23528024_SNP [dm6]	G	T	1.665e^-4	0.855	UPSTREAM CG10175 INTRON CG10175
2L	1054876	2L_1054876_SNP [dm3] 2L_1054876_SNP [dm6]	G	A	1.671e^-4	0.855	INTRON S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10777106	3L_10777106_SNP [dm3] 3L_10784006_SNP [dm6]	C	T	1.681e^-4	0.855	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	743847	2L_743847_SNP [dm3] 2L_743847_SNP [dm6]	A	C	1.681e^-4	0.855	INTRON Eaat2
2L	8886449	2L_8886449_SNP [dm3] 2L_8886449_SNP [dm6]	G	A	1.681e^-4	0.855	DOWNSTREAM CR44415 INTERGENIC
3L	12900335	3L_12900335_SNP [dm3] 3L_12907235_SNP [dm6]	T	G	1.687e^-4	0.855	INTERGENIC
2L	8891448	2L_8891448_SNP [dm3] 2L_8891448_SNP [dm6]	A	G	1.703e^-4	0.855	UTR_5_PRIME CG42713
X	2304524	X_2304524_SNP [dm3] X_2410491_SNP [dm6]	C	T	1.707e^-4	0.855	SYNONYMOUS_CODING CG12496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1054850	2L_1054850_DEL [dm3] 2L_1054850_DEL [dm6]	TACCAT	T	1.715e^-4	0.855	INTRON S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923057	2L_6923057_SNP [dm3] 2L_6923057_SNP [dm6]	T	A	1.717e^-4	0.855	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11505909	2L_11505909_SNP [dm3] 2L_11505909_SNP [dm6]	T	G	1.724e^-4	0.855	INTRON spz4
2L	13941595	2L_13941595_SNP [dm3] 2L_13941595_SNP [dm6]	T	C	1.729e^-4	0.855	INTRON Ance-3
2L	3212008	2L_3212008_SNP [dm3] 2L_3212008_SNP [dm6]	T	C	1.733e^-4	0.855	DOWNSTREAM CR45336 INTERGENIC
3R	10543277	3R_10543277_SNP [dm3] 3R_14717555_SNP [dm6]	T	C	1.735e^-4	0.855	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	1.750e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5212068	3L_5212068_SNP [dm3] 3L_5218968_SNP [dm6]	C	G	1.755e^-4	0.855	SYNONYMOUS_CODING shep
2R	3541673	2R_3541673_DEL [dm3] 2R_7654168_DEL [dm6]	TA	T	1.756e^-4	0.855	UPSTREAM Rpt1 & 1 other INTRON CG17985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16586506	2R_16586506_SNP [dm3] 2R_20699001_SNP [dm6]	T	C	1.770e^-4	0.855	START_GAINED dpr UTR_5_PRIME dpr	TF binding site mE1_TFBS_HSA
3R	14085525	3R_14085525_SNP [dm3] 3R_18259803_SNP [dm6]	C	T	1.778e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11505908	2L_11505908_SNP [dm3] 2L_11505908_SNP [dm6]	G	A	1.793e^-4	0.855	INTRON spz4
3L	17157744	3L_17157744_SNP [dm3] 3L_17164644_SNP [dm6]	G	T	1.796e^-4	0.855	INTRON Rbp6
2L	11498023	2L_11498023_SNP [dm3] 2L_11498023_SNP [dm6]	A	G	1.799e^-4	0.855	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6699250	2L_6699250_SNP [dm3] 2L_6699250_SNP [dm6]	T	C	1.799e^-4	0.855	INTRON Tsp
2L	11162791	2L_11162791_SNP [dm3] 2L_11162791_SNP [dm6]	A	T	1.803e^-4	0.855	INTRON Ca-beta
3R	26359377	3R_26359377_SNP [dm3] 3R_30533655_SNP [dm6]	A	C	1.805e^-4	0.855	INTRON tmod
2L	3380771	2L_3380771_SNP [dm3] 2L_3380771_SNP [dm6]	G	T	1.814e^-4	0.855	INTERGENIC
2L	3380772	2L_3380772_SNP [dm3] 2L_3380772_SNP [dm6]	T	C	1.814e^-4	0.855	INTERGENIC
X	3453920	X_3453920_SNP [dm3] X_3559887_SNP [dm6]	G	A	1.818e^-4	0.855	INTRON CG32791 & 1 other
2L	9281711	2L_9281711_SNP [dm3] 2L_9281711_SNP [dm6]	G	A	1.819e^-4	0.855	INTRON Ggamma30A
3R	22229195	3R_22229195_SNP [dm3] 3R_26403473_SNP [dm6]	T	G	1.822e^-4	0.855	INTRON ppk15
3L	21880011	3L_21880011_INS [dm3] 3L_21886911_INS [dm6]	T	TT	1.824e^-4	0.855	INTRON mub & 1 other	TF binding site mE1_TFBS_Trl
X	16857363	X_16857363_SNP [dm3] X_16963330_SNP [dm6]	A	T	1.830e^-4	0.855	INTRON CG9086	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9474805	2L_9474805_SNP [dm3] 2L_9474805_SNP [dm6]	T	C	1.835e^-4	0.855	INTERGENIC
3R	20988216	3R_20988216_SNP [dm3] 3R_25162494_SNP [dm6]	G	A	1.840e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5998205	3R_5998205_SNP [dm3] 3R_10172483_SNP [dm6]	T	G	1.848e^-4	0.855	INTRON CG12814
3R	22903429	3R_22903429_SNP [dm3] 3R_27077707_SNP [dm6]	G	A	1.858e^-4	0.855	INTRON CG14257
2L	11163429	2L_11163429_SNP [dm3] 2L_11163429_SNP [dm6]	G	A	1.862e^-4	0.855	INTRON Ca-beta
2L	12525831	2L_12525831_DEL [dm3] 2L_12525831_DEL [dm6]	AAATTATACTT...	A	1.875e^-4	0.855	INTRON bun
2L	7526288	2L_7526288_SNP [dm3] 2L_7526288_SNP [dm6]	C	T	1.881e^-4	0.855	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12090926	2L_12090926_SNP [dm3] 2L_12090926_SNP [dm6]	T	A	1.882e^-4	0.855	UPSTREAM Pex19 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	5078839	2L_5078839_SNP [dm3] 2L_5078839_SNP [dm6]	T	G	1.882e^-4	0.855	SYNONYMOUS_CODING pgant5
2L	14932675	2L_14932675_SNP [dm3] 2L_14932675_SNP [dm6]	G	A	1.886e^-4	0.855	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	737710	2L_737710_SNP [dm3] 2L_737710_SNP [dm6]	C	G	1.893e^-4	0.855	UTR_3_PRIME Eaat2
3R	18907909	3R_18907909_SNP [dm3] 3R_23082187_SNP [dm6]	A	G	1.898e^-4	0.855	INTRON CG13830
2L	16226229	2L_16226229_SNP [dm3] 2L_16226229_SNP [dm6]	G	T	1.900e^-4	0.855	INTERGENIC
3L	15199043	3L_15199043_SNP [dm3] 3L_15205943_SNP [dm6]	A	C	1.900e^-4	0.855	INTERGENIC
X	6149560	X_6149560_SNP [dm3] X_6255527_SNP [dm6]	G	A	1.902e^-4	0.855	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26478106	3R_26478106_SNP [dm3] 3R_30652384_SNP [dm6]	C	T	1.908e^-4	0.855	INTERGENIC
2L	11199286	2L_11199286_SNP [dm3] 2L_11199286_SNP [dm6]	C	T	1.909e^-4	0.855	INTRON Ca-beta
2R	15484766	2R_15484766_DEL [dm3] 2R_19597261_DEL [dm6]	TTCTGAAATGT...	T	1.912e^-4	0.855	DOWNSTREAM CG16716 INTRON sm
2L	9389346	2L_9389346_SNP [dm3] 2L_9389346_SNP [dm6]	C	T	1.913e^-4	0.855	INTRON Shawl & 1 other
3R	26807073	3R_26807073_SNP [dm3] 3R_30981351_SNP [dm6]	C	T	1.917e^-4	0.855	INTRON 5-HT7
3R	26138420	3R_26138420_SNP [dm3] 3R_30312698_SNP [dm6]	T	G	1.919e^-4	0.855	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	15870557	3L_15870557_DEL [dm3] 3L_15877457_DEL [dm6]	ATGACGAGCGCC...	A	1.922e^-4	0.855	UPSTREAM CR44051 INTRON pHCl
2R	16103893	2R_16103893_SNP [dm3] 2R_20216388_SNP [dm6]	A	C	1.929e^-4	0.855	INTERGENIC
2L	11163422	2L_11163422_SNP [dm3] 2L_11163422_SNP [dm6]	T	G	1.932e^-4	0.855	INTRON Ca-beta
2L	9511032	2L_9511032_SNP [dm3] 2L_9511032_SNP [dm6]	G	T	1.933e^-4	0.855	INTRON CG33298
2L	9829046	2L_9829046_SNP [dm3] 2L_9829046_SNP [dm6]	T	G	1.938e^-4	0.855	INTRON nAChRalpha6
2R	8498416	2R_8498416_SNP [dm3] 2R_12610911_SNP [dm6]	T	C	1.946e^-4	0.855	INTRON Amph
3L	1415659	3L_1415659_SNP [dm3] 3L_1415659_SNP [dm6]	G	T	1.948e^-4	0.855	UPSTREAM FucTD INTRON Ptp61F
2L	20786181	2L_20786181_SNP [dm3] 2L_20786181_SNP [dm6]	G	A	1.957e^-4	0.855	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	13117781	X_13117781_SNP [dm3] X_13223748_SNP [dm6]	C	T	1.966e^-4	0.855	INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13295408	2L_13295408_SNP [dm3] 2L_13295408_SNP [dm6]	C	T	1.973e^-4	0.855	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_dl
2L	18020500	2L_18020500_SNP [dm3] 2L_18020500_SNP [dm6]	A	T	1.974e^-4	0.855	INTRON rdo
2L	734645	2L_734645_SNP [dm3] 2L_734645_SNP [dm6]	A	T	1.974e^-4	0.855	INTERGENIC
2R	11412871	2R_11412871_SNP [dm3] 2R_15525366_SNP [dm6]	G	A	1.981e^-4	0.855	INTRON Khc-73
3R	10306472	3R_10306472_SNP [dm3] 3R_14480750_SNP [dm6]	A	T	1.984e^-4	0.855	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5983626	3R_5983626_SNP [dm3] 3R_10157904_SNP [dm6]	T	C	1.986e^-4	0.855	SYNONYMOUS_CODING Invadolysin	TF binding site mE1_TFBS_chinmo
2L	16777951	2L_16777951_SNP [dm3] 2L_16777951_SNP [dm6]	G	A	1.991e^-4	0.855	INTRON Mhc
2L	8886433	2L_8886433_SNP [dm3] 2L_8886433_SNP [dm6]	A	T	1.998e^-4	0.855	DOWNSTREAM CR44415 INTERGENIC
2L	8841351	2L_8841351_SNP [dm3] 2L_8841351_SNP [dm6]	G	A	2.005e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	21423067	3L_21423067_SNP [dm3] 3L_21429967_SNP [dm6]	A	T	2.011e^-4	0.855	SYNONYMOUS_CODING CG33288 INTRON barc
3L	17159514	3L_17159514_SNP [dm3] 3L_17166414_SNP [dm6]	C	T	2.021e^-4	0.855	UPSTREAM CR43433 INTRON Rbp6
2R	8149220	2R_8149220_SNP [dm3] 2R_12261715_SNP [dm6]	A	G	2.034e^-4	0.855	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7045316	2L_7045316_SNP [dm3] 2L_7045316_SNP [dm6]	G	A	2.036e^-4	0.855	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3048727	3L_3048727_SNP [dm3] 3L_3048727_SNP [dm6]	G	C	2.038e^-4	0.855	SYNONYMOUS_CODING Sk2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16235764	2L_16235764_SNP [dm3] 2L_16235764_SNP [dm6]	A	T	2.044e^-4	0.855	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10993832	3R_10993832_SNP [dm3] 3R_15168110_SNP [dm6]	G	T	2.053e^-4	0.855	INTRON Gyc88E
3L	8910913	3L_8910913_INS [dm3] 3L_8917813_INS [dm6]	C	ATA	2.054e^-4	0.855	INTRON Tsp66E
X	18429264	X_18429264_DEL [dm3] X_18535231_DEL [dm6]	TCT	T	2.054e^-4	0.855	SPLICE_SITE_REGION Bx UTR_5_PRIME Bx INTRON Bx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6921457	2L_6921457_SNP [dm3] 2L_6921457_SNP [dm6]	T	A	2.055e^-4	0.855	UPSTREAM Hrb27C INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	4619312	3L_4619312_DEL [dm3] 3L_4619312_DEL [dm6]	ATTTG	A	2.079e^-4	0.855	INTRON Src64B
3L	4619336	3L_4619336_DEL [dm3] 3L_4619336_DEL [dm6]	ATGGGAT	A	2.079e^-4	0.855	INTRON Src64B
3R	26480192	3R_26480192_SNP [dm3] 3R_30654470_SNP [dm6]	T	A	2.080e^-4	0.855	INTERGENIC
3R	22063487	3R_22063487_SNP [dm3] 3R_26237765_SNP [dm6]	G	A	2.081e^-4	0.855	INTRON CR42745
2L	3509447	2L_3509447_SNP [dm3] 2L_3509447_SNP [dm6]	G	A	2.084e^-4	0.855	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
2L	14035058	2L_14035058_SNP [dm3] 2L_14035058_SNP [dm6]	C	G	2.085e^-4	0.855	EXON CR45284
3R	16615466	3R_16615466_SNP [dm3] 3R_20789744_SNP [dm6]	G	A	2.091e^-4	0.855	UPSTREAM Syp INTRON Syp
2L	2722249	2L_2722249_SNP [dm3] 2L_2722249_SNP [dm6]	G	T	2.094e^-4	0.855	INTERGENIC
2L	12573231	2L_12573231_SNP [dm3] 2L_12573231_SNP [dm6]	G	T	2.098e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17808189	2R_17808189_SNP [dm3] 2R_21920684_SNP [dm6]	C	G	2.134e^-4	0.855	INTRON Fili	TF binding site mE1_TFBS_inv
2L	14852056	2L_14852056_SNP [dm3] 2L_14852056_SNP [dm6]	A	T	2.142e^-4	0.855	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12573228	2L_12573228_SNP [dm3] 2L_12573228_SNP [dm6]	T	C	2.147e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11341812	3L_11341812_SNP [dm3] 3L_11348712_SNP [dm6]	T	G	2.147e^-4	0.855	DOWNSTREAM CR45251 INTERGENIC
3L	10824655	3L_10824655_SNP [dm3] 3L_10831555_SNP [dm6]	C	T	2.150e^-4	0.855	INTERGENIC
3R	21527853	3R_21527853_SNP [dm3] 3R_25702131_SNP [dm6]	G	C	2.151e^-4	0.855	INTRON LpR2
X	6153918	X_6153918_SNP [dm3] X_6259885_SNP [dm6]	T	G	2.155e^-4	0.855	INTRON schlank
X	19168382	X_19168382_SNP [dm3] X_19274349_SNP [dm6]	T	C	2.169e^-4	0.855	SYNONYMOUS_CODING CG32537 DOWNSTREAM CG32536	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12928541	3R_12928541_SNP [dm3] 3R_17102819_SNP [dm6]	G	A	2.171e^-4	0.855	INTRON cher
2L	16206479	2L_16206479_SNP [dm3] 2L_16206479_SNP [dm6]	C	A	2.172e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17129467	3L_17129467_SNP [dm3] 3L_17136367_SNP [dm6]	A	C	2.177e^-4	0.855	INTRON Rbp6
3L	2804728	3L_2804728_SNP [dm3] 3L_2804728_SNP [dm6]	C	A	2.179e^-4	0.855	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	15074039	3R_15074039_SNP [dm3] 3R_19248317_SNP [dm6]	T	G	2.179e^-4	0.855	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13207419	2R_13207419_SNP [dm3] 2R_17319914_SNP [dm6]	A	G	2.180e^-4	0.855	INTRON mbl
X	11557148	X_11557148_SNP [dm3] X_11663115_SNP [dm6]	A	G	2.181e^-4	0.855	INTRON Ptp10D
2L	13941769	2L_13941769_SNP [dm3] 2L_13941769_SNP [dm6]	A	G	2.183e^-4	0.855	INTRON Ance-3
3R	14203834	3R_14203834_SNP [dm3] 3R_18378112_SNP [dm6]	C	T	2.184e^-4	0.855	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
X	9452398	X_9452398_INS [dm3] X_9558365_INS [dm6]	A	TTC	2.185e^-4	0.855	DOWNSTREAM Cubn EXON CR42767
X	9452400	X_9452400_INS [dm3] X_9558367_INS [dm6]	A	AG	2.199e^-4	0.855	DOWNSTREAM Cubn EXON CR42767
3L	1614107	3L_1614107_SNP [dm3] 3L_1614107_SNP [dm6]	A	G	2.200e^-4	0.855	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26478196	3R_26478196_SNP [dm3] 3R_30652474_SNP [dm6]	G	A	2.202e^-4	0.855	INTERGENIC
2L	15051859	2L_15051859_SNP [dm3] 2L_15051859_SNP [dm6]	A	G	2.204e^-4	0.855	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
2L	7842087	2L_7842087_SNP [dm3] 2L_7842087_SNP [dm6]	C	G	2.206e^-4	0.855	DOWNSTREAM CG14537 INTERGENIC
3R	25519846	3R_25519846_SNP [dm3] 3R_29694124_SNP [dm6]	G	A	2.208e^-4	0.855	INTRON dmrt99B
3R	24130294	3R_24130294_SNP [dm3] 3R_28304572_SNP [dm6]	C	T	2.209e^-4	0.855	UTR_5_PRIME CG12516
3L	5190137	3L_5190137_DEL [dm3] 3L_5197037_DEL [dm6]	AGGAGCAACTTTG...	A	2.210e^-4	0.855	INTRON shep
3L	6343167	3L_6343167_SNP [dm3] 3L_6350067_SNP [dm6]	T	A	2.212e^-4	0.855	UPSTREAM Sfp65A INTRON CG13300
2R	16360969	2R_16360969_SNP [dm3] 2R_20473464_SNP [dm6]	C	T	2.213e^-4	0.855	INTRON CG12484
2L	1611269	2L_1611269_SNP [dm3] 2L_1611269_SNP [dm6]	A	T	2.220e^-4	0.855	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8005514	3L_8005514_SNP [dm3] 3L_8012414_SNP [dm6]	G	A	2.233e^-4	0.855	INTRON nmo
2L	8946541	2L_8946541_SNP [dm3] 2L_8946541_SNP [dm6]	C	A	2.235e^-4	0.855	UTR_5_PRIME C1GalTA INTRON C1GalTA
2L	2053295	2L_2053295_SNP [dm3] 2L_2053295_SNP [dm6]	C	T	2.239e^-4	0.855	INTERGENIC
2L	7968165	2L_7968165_SNP [dm3] 2L_7968165_SNP [dm6]	T	A	2.243e^-4	0.855	INTRON Snoo
2R	17765351	2R_17765351_SNP [dm3] 2R_21877846_SNP [dm6]	G	A	2.248e^-4	0.855	INTRON Fili	TF binding site mE1_TFBS_cnc
2L	16228559	2L_16228559_SNP [dm3] 2L_16228559_SNP [dm6]	T	A	2.250e^-4	0.855	INTERGENIC
3L	20912230	3L_20912230_SNP [dm3] 3L_20919130_SNP [dm6]	A	C	2.254e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10363288	3L_10363288_SNP [dm3] 3L_10370188_SNP [dm6]	C	T	2.255e^-4	0.855	INTERGENIC
2L	1611286	2L_1611286_SNP [dm3] 2L_1611286_SNP [dm6]	G	C	2.255e^-4	0.855	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	26811085	3R_26811085_SNP [dm3] 3R_30985363_SNP [dm6]	G	A	2.256e^-4	0.855	INTRON 5-HT7
3R	12929109	3R_12929109_SNP [dm3] 3R_17103387_SNP [dm6]	C	T	2.257e^-4	0.855	INTRON cher
3L	21836999	3L_21836999_SNP [dm3] 3L_21843899_SNP [dm6]	C	T	2.260e^-4	0.855	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11885041	3L_11885041_SNP [dm3] 3L_11891941_SNP [dm6]	G	T	2.261e^-4	0.855	INTRON CG44837
2L	9245678	2L_9245678_SNP [dm3] 2L_9245678_SNP [dm6]	A	G	2.263e^-4	0.855	SYNONYMOUS_CODING tai
2L	10227604	2L_10227604_SNP [dm3] 2L_10227604_SNP [dm6]	C	G	2.264e^-4	0.855	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20929367	X_20929367_INS [dm3] X_21058340_INS [dm6]	T	TCGT	2.273e^-4	0.855	INTRON bves
2R	16123149	2R_16123149_SNP [dm3] 2R_20235644_SNP [dm6]	G	T	2.275e^-4	0.855	NON_SYNONYMOUS_CODING CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
2L	10783859	2L_10783859_SNP [dm3] 2L_10783859_SNP [dm6]	T	G	2.277e^-4	0.855	INTRON CG31869
3L	12285149	3L_12285149_SNP [dm3] 3L_12292049_SNP [dm6]	G	A	2.277e^-4	0.855	SYNONYMOUS_CODING CG4328	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24129633	3R_24129633_SNP [dm3] 3R_28303911_SNP [dm6]	T	C	2.295e^-4	0.855	SYNONYMOUS_CODING CG12516
3R	22910302	3R_22910302_DEL [dm3] 3R_27084580_DEL [dm6]	TAATTGCACC	T	2.296e^-4	0.855	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
X	18180126	X_18180126_SNP [dm3] X_18286093_SNP [dm6]	C	T	2.300e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3R	26811050	3R_26811050_SNP [dm3] 3R_30985328_SNP [dm6]	C	T	2.308e^-4	0.855	INTRON 5-HT7
3R	14203840	3R_14203840_SNP [dm3] 3R_18378118_SNP [dm6]	A	T	2.317e^-4	0.855	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9357972	3L_9357972_SNP [dm3] 3L_9364872_SNP [dm6]	A	G	2.321e^-4	0.855	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1611669	3L_1611669_SNP [dm3] 3L_1611669_SNP [dm6]	T	C	2.323e^-4	0.855	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3R	26810930	3R_26810930_SNP [dm3] 3R_30985208_SNP [dm6]	C	T	2.325e^-4	0.855	INTRON 5-HT7
3L	10930395	3L_10930395_SNP [dm3] 3L_10937295_SNP [dm6]	G	A	2.331e^-4	0.855	INTERGENIC
2L	9622363	2L_9622363_SNP [dm3] 2L_9622363_SNP [dm6]	A	T	2.341e^-4	0.855	INTRON GlcAT-S
2L	17745214	2L_17745214_SNP [dm3] 2L_17745214_SNP [dm6]	T	C	2.342e^-4	0.855	INTRON CadN
3R	24548177	3R_24548177_DEL [dm3] 3R_28722455_DEL [dm6]	TGAG	T	2.346e^-4	0.855	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4316403	2L_4316403_SNP [dm3] 2L_4316403_SNP [dm6]	A	T	2.348e^-4	0.855	DOWNSTREAM tutl INTRON tutl
3L	20694758	3L_20694758_SNP [dm3] 3L_20701658_SNP [dm6]	G	A	2.349e^-4	0.855	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
X	18472550	X_18472550_SNP [dm3] X_18578517_SNP [dm6]	T	C	2.350e^-4	0.855	INTERGENIC
3L	4969189	3L_4969189_SNP [dm3] 3L_4969189_SNP [dm6]	C	T	2.351e^-4	0.855	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17952346	3R_17952346_SNP [dm3] 3R_22126624_SNP [dm6]	G	A	2.352e^-4	0.855	INTRON CG42390
X	18913589	X_18913589_SNP [dm3] X_19019556_SNP [dm6]	C	T	2.355e^-4	0.855	INTRON CG43759
3L	4619352	3L_4619352_SNP [dm3] 3L_4619352_SNP [dm6]	T	A	2.366e^-4	0.855	INTRON Src64B
3R	19041922	3R_19041922_SNP [dm3] 3R_23216200_SNP [dm6]	A	C	2.367e^-4	0.855	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18418571	X_18418571_INS [dm3] X_18524538_INS [dm6]	T	AC	2.368e^-4	0.855	INTRON Bx
X	12255054	X_12255054_SNP [dm3] X_12361021_SNP [dm6]	A	T	2.371e^-4	0.855	INTERGENIC
3R	22228970	3R_22228970_SNP [dm3] 3R_26403248_SNP [dm6]	A	G	2.378e^-4	0.855	SYNONYMOUS_CODING ppk15
2L	11163434	2L_11163434_SNP [dm3] 2L_11163434_SNP [dm6]	C	T	2.380e^-4	0.855	INTRON Ca-beta
2L	10091015	2L_10091015_SNP [dm3] 2L_10091015_SNP [dm6]	C	T	2.384e^-4	0.855	DOWNSTREAM CG13133 INTRON CG44153
2L	16566875	2L_16566875_SNP [dm3] 2L_16566875_SNP [dm6]	A	G	2.398e^-4	0.858	INTRON CG42389
3L	8640824	3L_8640824_SNP [dm3] 3L_8647724_SNP [dm6]	T	C	2.404e^-4	0.859	SYNONYMOUS_CODING Arr2 UPSTREAM CG13305 INTRON Pex7	TF binding site mE1_TFBS_sens
3R	10543041	3R_10543041_SNP [dm3] 3R_14717319_SNP [dm6]	C	T	2.410e^-4	0.859	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	10338346	X_10338346_INS [dm3] X_10444313_INS [dm6]	C	CAC	2.417e^-4	0.859	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
X	12188395	X_12188395_SNP [dm3] X_12294362_SNP [dm6]	A	G	2.429e^-4	0.859	INTRON Ten-a
3R	14901910	3R_14901910_SNP [dm3] 3R_19076188_SNP [dm6]	C	T	2.430e^-4	0.859	INTRON cdi
3L	2804644	3L_2804644_SNP [dm3] 3L_2804644_SNP [dm6]	T	C	2.435e^-4	0.859	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12168832	2R_12168832_SNP [dm3] 2R_16281327_SNP [dm6]	C	T	2.436e^-4	0.859	DOWNSTREAM CG15704 & 1 other INTRON CG15705
2L	15097510	2L_15097510_SNP [dm3] 2L_15097510_SNP [dm6]	C	T	2.444e^-4	0.859	DOWNSTREAM CG15270 INTERGENIC	TF binding site mE1_TFBS_inv
2L	5254412	2L_5254412_SNP [dm3] 2L_5254412_SNP [dm6]	A	G	2.453e^-4	0.859	INTRON tkv	TF binding site mE1_TFBS_chinmo
X	18180121	X_18180121_SNP [dm3] X_18286088_SNP [dm6]	T	C	2.456e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
X	13904114	X_13904114_INS [dm3] X_14010081_INS [dm6]	A	ATGGTGGTGGGTGA...	2.461e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15636669	X_15636669_SNP [dm3] X_15742636_SNP [dm6]	A	T	2.465e^-4	0.859	UTR_3_PRIME CG8944
2R	10680858	2R_10680858_SNP [dm3] 2R_14793353_SNP [dm6]	A	T	2.466e^-4	0.859	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9247683	2L_9247683_SNP [dm3] 2L_9247683_SNP [dm6]	T	C	2.467e^-4	0.859	UTR_3_PRIME tai DOWNSTREAM tai
X	11058286	X_11058286_SNP [dm3] X_11164253_SNP [dm6]	A	G	2.476e^-4	0.859	UTR_3_PRIME Dlic
2R	11732741	2R_11732741_SNP [dm3] 2R_15845236_SNP [dm6]	G	A	2.479e^-4	0.859	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
2R	16458955	2R_16458955_SNP [dm3] 2R_20571450_SNP [dm6]	C	T	2.479e^-4	0.859	INTRON qsm
2R	9645906	2R_9645906_SNP [dm3] 2R_13758401_SNP [dm6]	G	A	2.508e^-4	0.861	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
2L	14469916	2L_14469916_SNP [dm3] 2L_14469916_SNP [dm6]	C	A	2.508e^-4	0.861	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4619333	3L_4619333_DEL [dm3] 3L_4619333_DEL [dm6]	GT	G	2.512e^-4	0.861	INTRON Src64B
2R	9804544	2R_9804544_DEL [dm3] 2R_13917039_DEL [dm6]	ATATAAAA	A	2.512e^-4	0.861	INTRON shot
X	5902086	X_5902086_SNP [dm3] X_6008053_SNP [dm6]	C	A	2.516e^-4	0.861	DOWNSTREAM mab-21 INTERGENIC
2L	8758032	2L_8758032_SNP [dm3] 2L_8758032_SNP [dm6]	T	G	2.526e^-4	0.861	INTERGENIC
3L	6388420	3L_6388420_SNP [dm3] 3L_6395320_SNP [dm6]	A	T	2.529e^-4	0.861	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8693379	2R_8693379_SNP [dm3] 2R_12805874_SNP [dm6]	C	T	2.531e^-4	0.861	UPSTREAM CG17580 INTERGENIC
2L	911416	2L_911416_SNP [dm3] 2L_911416_SNP [dm6]	T	C	2.533e^-4	0.861	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16611638	X_16611638_SNP [dm3] X_16717605_SNP [dm6]	C	T	2.533e^-4	0.861	INTRON CG34325
3L	10405591	3L_10405591_SNP [dm3] 3L_10412491_SNP [dm6]	C	T	2.546e^-4	0.861	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	6285779	2L_6285779_SNP [dm3] 2L_6285779_SNP [dm6]	T	C	2.546e^-4	0.861	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10987959	3R_10987959_SNP [dm3] 3R_15162237_SNP [dm6]	T	C	2.551e^-4	0.861	INTRON Gyc88E
2L	7045319	2L_7045319_SNP [dm3] 2L_7045319_SNP [dm6]	C	A	2.551e^-4	0.861	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2134425	3L_2134425_SNP [dm3] 3L_2134425_SNP [dm6]	C	T	2.553e^-4	0.861	SYNONYMOUS_CODING zormin
2L	8131094	2L_8131094_SNP [dm3] 2L_8131094_SNP [dm6]	T	A	2.562e^-4	0.862	INTRON CG8668
3L	1124815	3L_1124815_SNP [dm3] 3L_1124815_SNP [dm6]	C	A	2.574e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
2L	13295414	2L_13295414_SNP [dm3] 2L_13295414_SNP [dm6]	A	T	2.577e^-4	0.862	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_dl
2L	9382182	2L_9382182_SNP [dm3] 2L_9382182_SNP [dm6]	G	T	2.580e^-4	0.862	INTRON Shawl
2L	11498068	2L_11498068_SNP [dm3] 2L_11498068_SNP [dm6]	T	C	2.585e^-4	0.862	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	18172407	X_18172407_SNP [dm3] X_18278374_SNP [dm6]	A	G	2.591e^-4	0.862	INTRON upd3
2L	6923106	2L_6923106_INS [dm3] 2L_6923106_INS [dm6]	A	AT	2.592e^-4	0.862	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10114952	2L_10114952_SNP [dm3] 2L_10114952_SNP [dm6]	A	T	2.593e^-4	0.862	INTRON CG44153 & 1 other
2L	14470221	2L_14470221_SNP [dm3] 2L_14470221_SNP [dm6]	C	T	2.598e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26473882	3R_26473882_SNP [dm3] 3R_30648160_SNP [dm6]	G	A	2.606e^-4	0.862	SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG34432
3L	4002189	3L_4002189_SNP [dm3] 3L_4002189_SNP [dm6]	G	A	2.613e^-4	0.862	INTERGENIC
3R	18498035	3R_18498035_SNP [dm3] 3R_22672313_SNP [dm6]	C	G	2.614e^-4	0.862	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5406023	2L_5406023_SNP [dm3] 2L_5406023_SNP [dm6]	T	A	2.616e^-4	0.862	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11938539	X_11938539_SNP [dm3] X_12044506_SNP [dm6]	T	A	2.619e^-4	0.862	INTRON CR43960 & 1 other
3R	6311242	3R_6311242_SNP [dm3] 3R_10485520_SNP [dm6]	T	A	2.634e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18790839	3R_18790839_SNP [dm3] 3R_22965117_SNP [dm6]	G	A	2.636e^-4	0.864	UPSTREAM CR43655 INTERGENIC
2L	9247328	2L_9247328_SNP [dm3] 2L_9247328_SNP [dm6]	A	G	2.653e^-4	0.866	UTR_3_PRIME tai DOWNSTREAM tai
3L	20689283	3L_20689283_SNP [dm3] 3L_20696183_SNP [dm6]	A	T	2.653e^-4	0.866	UPSTREAM kni INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr
3L	3569542	3L_3569542_SNP [dm3] 3L_3569542_SNP [dm6]	T	A	2.657e^-4	0.866	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	21874698	3L_21874698_DEL [dm3] 3L_21881598_DEL [dm6]	TT	T	2.672e^-4	0.866	INTRON mub
2L	737176	2L_737176_SNP [dm3] 2L_737176_SNP [dm6]	G	A	2.675e^-4	0.866	DOWNSTREAM Eaat2 INTERGENIC
2R	16995019	2R_16995019_SNP [dm3] 2R_21107514_SNP [dm6]	A	G	2.677e^-4	0.866	INTRON ktub
2L	10028726	2L_10028726_SNP [dm3] 2L_10028726_SNP [dm6]	C	G	2.681e^-4	0.866	SYNONYMOUS_CODING CG13127
3L	10234594	3L_10234594_SNP [dm3] 3L_10241494_SNP [dm6]	T	A	2.684e^-4	0.866	DOWNSTREAM CR45403 INTERGENIC
3R	22732327	3R_22732327_SNP [dm3] 3R_26906605_SNP [dm6]	G	T	2.687e^-4	0.866	INTRON T48	regulatory region REDfly_CRMs
X	21902315	X_21902315_SNP [dm3] X_22500479_SNP [dm6]	C	G	2.688e^-4	0.866	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2896547	3L_2896547_SNP [dm3] 3L_2896547_SNP [dm6]	A	T	2.700e^-4	0.868	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9661455	3R_9661455_DEL [dm3] 3R_13835733_DEL [dm6]	GAACCCCCT	A	2.710e^-4	0.868	INTRON Nsf2	TF binding site mE1_TFBS_cad
2L	14170800	2L_14170800_SNP [dm3] 2L_14170800_SNP [dm6]	G	A	2.713e^-4	0.868	INTRON CG43333
3L	5224132	3L_5224132_SNP [dm3] 3L_5231032_SNP [dm6]	C	T	2.715e^-4	0.868	INTRON shep
X	16158185	X_16158185_SNP [dm3] X_16264152_SNP [dm6]	A	G	2.716e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16164145	3L_16164145_SNP [dm3] 3L_16171045_SNP [dm6]	A	G	2.723e^-4	0.869	SYNONYMOUS_CODING CG33795 UPSTREAM CG33796
2L	8631654	2L_8631654_SNP [dm3] 2L_8631654_SNP [dm6]	T	C	2.731e^-4	0.869	INTRON Sema-1a	TF binding site mE1_TFBS_inv
X	16158238	X_16158238_SNP [dm3] X_16264205_SNP [dm6]	T	G	2.739e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17985801	2R_17985801_SNP [dm3] 2R_22098296_SNP [dm6]	G	T	2.743e^-4	0.869	INTRON CG11073
X	19369018	X_19369018_SNP [dm3] X_19474985_SNP [dm6]	T	G	2.746e^-4	0.869	UPSTREAM CG12200 INTRON CG32533	TF binding site mE1_TFBS_inv
2L	13295438	2L_13295438_SNP [dm3] 2L_13295438_SNP [dm6]	T	A	2.747e^-4	0.869	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_dl
X	7703205	X_7703205_SNP [dm3] X_7809172_SNP [dm6]	T	C	2.751e^-4	0.869	INTERGENIC
3R	26640403	3R_26640403_SNP [dm3] 3R_30814681_SNP [dm6]	C	A	2.760e^-4	0.869	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16158168	X_16158168_SNP [dm3] X_16264135_SNP [dm6]	A	T	2.773e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8131089	2L_8131089_SNP [dm3] 2L_8131089_SNP [dm6]	A	C	2.774e^-4	0.869	INTRON CG8668
2L	5473763	2L_5473763_SNP [dm3] 2L_5473763_SNP [dm6]	A	T	2.781e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	14677523	2R_14677523_SNP [dm3] 2R_18790018_SNP [dm6]	T	C	2.794e^-4	0.869	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14636829	X_14636829_DEL [dm3] X_14742796_DEL [dm6]	TGT	T	2.796e^-4	0.869	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18044067	3R_18044067_SNP [dm3] 3R_22218345_SNP [dm6]	C	A	2.796e^-4	0.869	DOWNSTREAM Gld2 INTRON SKIP
2L	8240446	2L_8240446_SNP [dm3] 2L_8240446_SNP [dm6]	T	C	2.807e^-4	0.869	UTR_3_PRIME Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3393761	2L_3393761_SNP [dm3] 2L_3393761_SNP [dm6]	A	G	2.815e^-4	0.869	INTERGENIC
2R	9885256	2R_9885256_SNP [dm3] 2R_13997751_SNP [dm6]	T	A	2.818e^-4	0.869	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6458620	3L_6458620_SNP [dm3] 3L_6465520_SNP [dm6]	T	C	2.820e^-4	0.869	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17157734	3L_17157734_SNP [dm3] 3L_17164634_SNP [dm6]	A	G	2.822e^-4	0.869	INTRON Rbp6
2L	9057602	2L_9057602_SNP [dm3] 2L_9057602_SNP [dm6]	T	C	2.823e^-4	0.869	INTRON CG31708
2L	10995768	2L_10995768_SNP [dm3] 2L_10995768_SNP [dm6]	A	T	2.824e^-4	0.869	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	5881351	2L_5881351_SNP [dm3] 2L_5881351_SNP [dm6]	G	A	2.826e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13881514	2L_13881514_SNP [dm3] 2L_13881514_SNP [dm6]	T	C	2.830e^-4	0.869	INTRON CenG1A
3L	14086051	3L_14086051_SNP [dm3] 3L_14092951_SNP [dm6]	T	C	2.834e^-4	0.869	INTERGENIC
3L	2804614	3L_2804614_SNP [dm3] 3L_2804614_SNP [dm6]	C	T	2.856e^-4	0.869	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	10545264	3R_10545264_SNP [dm3] 3R_14719542_SNP [dm6]	A	T	2.857e^-4	0.869	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8131137	2L_8131137_SNP [dm3] 2L_8131137_SNP [dm6]	G	T	2.860e^-4	0.869	INTRON CG8668
2R	16482357	2R_16482357_SNP [dm3] 2R_20594852_SNP [dm6]	G	C	2.860e^-4	0.869	INTRON bl
3L	12335136	3L_12335136_SNP [dm3] 3L_12342036_SNP [dm6]	G	A	2.861e^-4	0.869	INTRON CrzR
2L	16492278	2L_16492278_DEL [dm3] 2L_16492278_DEL [dm6]	GAT	A	2.862e^-4	0.869	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
3R	25853315	3R_25853315_SNP [dm3] 3R_30027593_SNP [dm6]	C	T	2.888e^-4	0.869	INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18418448	X_18418448_DEL [dm3] X_18524415_DEL [dm6]	AACAGGCGTTAGTGGATAGA...	A	2.890e^-4	0.869	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	16101582	2R_16101582_DEL [dm3] 2R_20214077_DEL [dm6]	TATGGGTCAT	T	2.903e^-4	0.869	INTERGENIC
X	13199020	X_13199020_SNP [dm3] X_13304987_SNP [dm6]	A	T	2.904e^-4	0.869	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018
2R	16123758	2R_16123758_SNP [dm3] 2R_20236253_SNP [dm6]	G	A	2.908e^-4	0.869	UTR_5_PRIME CG11099 UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other
3R	12940881	3R_12940881_SNP [dm3] 3R_17115159_SNP [dm6]	A	G	2.913e^-4	0.869	INTRON cher
2L	9829032	2L_9829032_SNP [dm3] 2L_9829032_SNP [dm6]	C	A	2.915e^-4	0.869	INTRON nAChRalpha6
2L	7836587	2L_7836587_SNP [dm3] 2L_7836587_SNP [dm6]	T	C	2.922e^-4	0.869	INTERGENIC
2R	19745925	2R_19745925_SNP [dm3] 2R_23858402_SNP [dm6]	T	G	2.929e^-4	0.869	NON_SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16856868	X_16856868_SNP [dm3] X_16962835_SNP [dm6]	T	A	2.931e^-4	0.869	INTRON CG9086
2L	578641	2L_578641_SNP [dm3] 2L_578641_SNP [dm6]	G	A	2.933e^-4	0.869	SYNONYMOUS_CODING Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5013736	3R_5013736_SNP [dm3] 3R_9188014_SNP [dm6]	A	G	2.937e^-4	0.869	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6451256	3L_6451256_SNP [dm3] 3L_6458156_SNP [dm6]	C	G	2.938e^-4	0.869	INTRON CG42747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14852022	2L_14852022_SNP [dm3] 2L_14852022_SNP [dm6]	C	A	2.939e^-4	0.869	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3991618	2L_3991618_SNP [dm3] 2L_3991618_SNP [dm6]	C	T	2.942e^-4	0.869	UTR_5_PRIME fred	TF binding site mE1_TFBS_Trl
2R	14318941	2R_14318941_SNP [dm3] 2R_18431436_SNP [dm6]	A	G	2.942e^-4	0.869	SYNONYMOUS_CODING CG30118	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4416443	X_4416443_SNP [dm3] X_4522410_SNP [dm6]	G	A	2.947e^-4	0.869	INTRON CR32773
3R	19343779	3R_19343779_SNP [dm3] 3R_23518057_SNP [dm6]	G	A	2.955e^-4	0.869	INTRON Irk2
3L	2198501	3L_2198501_SNP [dm3] 3L_2198501_SNP [dm6]	T	G	2.964e^-4	0.869	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15869463	3L_15869463_SNP [dm3] 3L_15876363_SNP [dm6]	G	C	2.965e^-4	0.869	INTRON pHCl EXON CR44051
2L	12251461	2L_12251461_SNP [dm3] 2L_12251461_SNP [dm6]	G	A	2.977e^-4	0.869	INTRON aret
2L	8240137	2L_8240137_SNP [dm3] 2L_8240137_SNP [dm6]	A	G	2.978e^-4	0.869	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	6617763	X_6617763_SNP [dm3] X_6723730_SNP [dm6]	A	G	2.982e^-4	0.869	SYNONYMOUS_CODING CG3168	TF binding site mE1_TFBS_chinmo
X	18672362	X_18672362_SNP [dm3] X_18778329_SNP [dm6]	G	A	2.984e^-4	0.869	INTRON CG6891
3R	23138685	3R_23138685_SNP [dm3] 3R_27312963_SNP [dm6]	C	T	2.997e^-4	0.869	INTRON CG3339
2L	2722232	2L_2722232_SNP [dm3] 2L_2722232_SNP [dm6]	G	C	2.999e^-4	0.869	INTERGENIC
2L	1856375	2L_1856375_SNP [dm3] 2L_1856375_SNP [dm6]	G	A	3.000e^-4	0.869	INTRON wry
2L	3490000	2L_3490000_SNP [dm3] 2L_3490000_SNP [dm6]	G	A	3.003e^-4	0.869	INTRON CG15414
2R	16124849	2R_16124849_SNP [dm3] 2R_20237344_SNP [dm6]	C	T	3.010e^-4	0.869	SYNONYMOUS_CODING CG11099
2R	12004265	2R_12004265_DEL [dm3] 2R_16116760_DEL [dm6]	TGTT	T	3.013e^-4	0.869	UTR_3_PRIME Asph UPSTREAM Jhedup
2L	20791988	2L_20791988_DEL [dm3] 2L_20791988_DEL [dm6]	GCAAGAAAATCGT...	G	3.014e^-4	0.869	INTRON vari	TF binding site mE1_TFBS_Trl
2L	10098840	2L_10098840_SNP [dm3] 2L_10098840_SNP [dm6]	A	G	3.033e^-4	0.869	INTRON CG34109 & 1 other
3R	15073405	3R_15073405_SNP [dm3] 3R_19247683_SNP [dm6]	C	G	3.034e^-4	0.869	INTRON CG5217
3L	8524751	3L_8524751_SNP [dm3] 3L_8531651_SNP [dm6]	T	C	3.034e^-4	0.869	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13205983	2R_13205983_SNP [dm3] 2R_17318478_SNP [dm6]	T	A	3.040e^-4	0.869	INTRON mbl
2R	16441389	2R_16441389_SNP [dm3] 2R_20553884_SNP [dm6]	C	T	3.040e^-4	0.869	INTERGENIC
3R	8103709	3R_8103709_SNP [dm3] 3R_12277987_SNP [dm6]	T	G	3.053e^-4	0.869	INTRON svp
X	16177212	X_16177212_SNP [dm3] X_16283179_SNP [dm6]	A	T	3.058e^-4	0.869	INTRON eas	TF binding site BDTNP1_TFBS_dl
2L	8838729	2L_8838729_SNP [dm3] 2L_8838729_SNP [dm6]	C	T	3.059e^-4	0.869	INTERGENIC
X	12021758	X_12021758_SNP [dm3] X_12127725_SNP [dm6]	C	G	3.064e^-4	0.869	UPSTREAM Ten-a INTRON Ten-a
2R	20149140	2R_20149140_SNP [dm3] 2R_24261617_SNP [dm6]	A	T	3.079e^-4	0.869	UTR_5_PRIME CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17087215	2L_17087215_SNP [dm3] 2L_17087215_SNP [dm6]	T	C	3.085e^-4	0.869	UPSTREAM CG12620 DOWNSTREAM CR43819 INTERGENIC
2L	7045320	2L_7045320_SNP [dm3] 2L_7045320_SNP [dm6]	C	T	3.090e^-4	0.869	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12625943	3L_12625943_SNP [dm3] 3L_12632843_SNP [dm6]	A	C	3.112e^-4	0.869	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5394476	2L_5394476_SNP [dm3] 2L_5394476_SNP [dm6]	G	C	3.114e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17970188	X_17970188_SNP [dm3] X_18076155_SNP [dm6]	T	C	3.123e^-4	0.869	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_sens
2L	2389791	2L_2389791_INS [dm3] 2L_2389791_INS [dm6]	C	CG	3.132e^-4	0.869	UTR_3_PRIME CG43750 DOWNSTREAM CG43750
2R	18714987	2R_18714987_SNP [dm3] 2R_22827464_SNP [dm6]	C	T	3.134e^-4	0.869	INTRON CG30274 & 1 other
X	21083185	X_21083185_SNP [dm3] X_21212158_SNP [dm6]	C	T	3.136e^-4	0.869	INTRON CG32521
2L	8838723	2L_8838723_SNP [dm3] 2L_8838723_SNP [dm6]	T	G	3.139e^-4	0.869	INTERGENIC
3L	6281240	3L_6281240_SNP [dm3] 3L_6288140_SNP [dm6]	T	A	3.154e^-4	0.869	INTERGENIC
3R	13091618	3R_13091618_SNP [dm3] 3R_17265896_SNP [dm6]	A	T	3.157e^-4	0.869	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3R	5995319	3R_5995319_SNP [dm3] 3R_10169597_SNP [dm6]	T	A	3.169e^-4	0.869	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16184563	X_16184563_SNP [dm3] X_16290530_SNP [dm6]	T	A	3.172e^-4	0.869	INTRON caz	TF binding site BDTNP1_TFBS_dl
3R	26649938	3R_26649938_SNP [dm3] 3R_30824216_SNP [dm6]	G	T	3.173e^-4	0.869	INTRON cindr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	21310616	X_21310616_DEL [dm3] X_21439589_DEL [dm6]	CGTTAGTAAGCTTATTTCAT...	C	3.173e^-4	0.869	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3R	25455511	3R_25455511_DEL [dm3] 3R_29629789_DEL [dm6]	AAAA	A	3.188e^-4	0.869	DOWNSTREAM Dop1R2 INTERGENIC
3L	8908885	3L_8908885_SNP [dm3] 3L_8915785_SNP [dm6]	G	T	3.189e^-4	0.869	DOWNSTREAM CR43970 INTRON Tsp66E
2L	7238643	2L_7238643_DEL [dm3] 2L_7238643_DEL [dm6]	AT	A	3.192e^-4	0.869	INTRON Ndae1
3R	6320088	3R_6320088_SNP [dm3] 3R_10494366_SNP [dm6]	G	T	3.202e^-4	0.869	INTERGENIC
2L	12525858	2L_12525858_SNP [dm3] 2L_12525858_SNP [dm6]	G	A	3.210e^-4	0.869	INTRON bun
3L	17150539	3L_17150539_SNP [dm3] 3L_17157439_SNP [dm6]	T	C	3.212e^-4	0.869	INTRON Rbp6
2L	3318207	2L_3318207_SNP [dm3] 2L_3318207_SNP [dm6]	T	G	3.213e^-4	0.869	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
X	9282802	X_9282802_SNP [dm3] X_9388769_SNP [dm6]	T	A	3.214e^-4	0.869	INTRON mgl
3R	6288382	3R_6288382_SNP [dm3] 3R_10462660_SNP [dm6]	A	T	3.215e^-4	0.869	DOWNSTREAM CR44939 EXON CR44955
3L	16164142	3L_16164142_SNP [dm3] 3L_16171042_SNP [dm6]	G	A	3.222e^-4	0.869	SYNONYMOUS_CODING CG33795 UPSTREAM CG33796
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	3.226e^-4	0.869	INTRON fz
3R	22732301	3R_22732301_SNP [dm3] 3R_26906579_SNP [dm6]	T	G	3.227e^-4	0.869	INTRON T48	regulatory region REDfly_CRMs
2L	11498097	2L_11498097_SNP [dm3] 2L_11498097_SNP [dm6]	G	T	3.231e^-4	0.869	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10405515	3L_10405515_SNP [dm3] 3L_10412415_SNP [dm6]	G	A	3.237e^-4	0.869	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	23137122	3R_23137122_SNP [dm3] 3R_27311400_SNP [dm6]	G	A	3.239e^-4	0.869	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26479369	3R_26479369_SNP [dm3] 3R_30653647_SNP [dm6]	G	A	3.247e^-4	0.869	INTERGENIC
X	12255091	X_12255091_SNP [dm3] X_12361058_SNP [dm6]	T	G	3.249e^-4	0.869	INTERGENIC
2L	15105681	2L_15105681_SNP [dm3] 2L_15105681_SNP [dm6]	T	A	3.251e^-4	0.869	INTERGENIC
3R	6352419	3R_6352419_SNP [dm3] 3R_10526697_SNP [dm6]	A	G	3.260e^-4	0.869	INTRON hth
2L	732616	2L_732616_SNP [dm3] 2L_732616_SNP [dm6]	G	A	3.263e^-4	0.869	INTERGENIC
3L	16660682	3L_16660682_SNP [dm3] 3L_16667582_SNP [dm6]	A	G	3.264e^-4	0.869	INTRON Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24248333	3R_24248333_SNP [dm3] 3R_28422611_SNP [dm6]	G	C	3.264e^-4	0.869	INTRON beat-VI
3R	16077657	3R_16077657_SNP [dm3] 3R_20251935_SNP [dm6]	A	C	3.267e^-4	0.869	UPSTREAM cic INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1657044	3L_1657044_SNP [dm3] 3L_1657044_SNP [dm6]	A	G	3.272e^-4	0.869	NON_SYNONYMOUS_CODING CG7971
3L	8969004	3L_8969004_SNP [dm3] 3L_8975904_SNP [dm6]	A	G	3.274e^-4	0.869	SYNONYMOUS_CODING Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8867421	2R_8867421_SNP [dm3] 2R_12979916_SNP [dm6]	T	C	3.277e^-4	0.869	INTRON Psc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	26109857	3R_26109857_SNP [dm3] 3R_30284135_SNP [dm6]	A	T	3.293e^-4	0.869	INTRON hdc
2L	736733	2L_736733_SNP [dm3] 2L_736733_SNP [dm6]	C	T	3.297e^-4	0.869	DOWNSTREAM Eaat2 INTERGENIC
2L	6922987	2L_6922987_SNP [dm3] 2L_6922987_SNP [dm6]	T	C	3.309e^-4	0.869	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10179535	3R_10179535_SNP [dm3] 3R_14353813_SNP [dm6]	G	T	3.317e^-4	0.869	INTRON NK7.1
X	18384314	X_18384314_DEL [dm3] X_18490281_DEL [dm6]	GGT	G	3.317e^-4	0.869	UPSTREAM CG15046 DOWNSTREAM CG15044 INTERGENIC
3R	24184686	3R_24184686_SNP [dm3] 3R_28358964_SNP [dm6]	G	T	3.319e^-4	0.869	INTERGENIC
X	19611112	X_19611112_DEL [dm3] X_19717079_DEL [dm6]	AC	A	3.323e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6515593	2L_6515593_SNP [dm3] 2L_6515593_SNP [dm6]	A	G	3.329e^-4	0.869	INTRON CG31637
3L	9211914	3L_9211914_SNP [dm3] 3L_9218814_SNP [dm6]	G	A	3.340e^-4	0.869	INTERGENIC
2R	9572557	2R_9572557_SNP [dm3] 2R_13685052_SNP [dm6]	A	G	3.340e^-4	0.869	INTRON fas
3L	6345208	3L_6345208_SNP [dm3] 3L_6352108_SNP [dm6]	T	C	3.347e^-4	0.869	START_GAINED CG13300 UTR_5_PRIME CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7842523	2L_7842523_SNP [dm3] 2L_7842523_SNP [dm6]	C	G	3.349e^-4	0.869	INTERGENIC
3L	1611668	3L_1611668_SNP [dm3] 3L_1611668_SNP [dm6]	G	A	3.358e^-4	0.869	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3L	14997719	3L_14997719_SNP [dm3] 3L_15004619_SNP [dm6]	G	A	3.359e^-4	0.869	INTRON Reck
2L	4694458	2L_4694458_DEL [dm3] 2L_4694458_DEL [dm6]	TAACTCATAAAAACT...	T	3.359e^-4	0.869	UPSTREAM CG34351 INTERGENIC
3R	25097436	3R_25097436_SNP [dm3] 3R_29271714_SNP [dm6]	A	T	3.359e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs
3R	10300284	3R_10300284_SNP [dm3] 3R_14474562_SNP [dm6]	T	C	3.374e^-4	0.869	INTRON cv-c	TF binding site mE1_TFBS_cad
X	16857773	X_16857773_SNP [dm3] X_16963740_SNP [dm6]	T	A	3.375e^-4	0.869	INTRON CG9086
3R	26478776	3R_26478776_SNP [dm3] 3R_30653054_SNP [dm6]	A	T	3.378e^-4	0.869	INTERGENIC
2L	6573087	2L_6573087_SNP [dm3] 2L_6573087_SNP [dm6]	G	A	3.385e^-4	0.869	INTRON CG11319
3L	12314892	3L_12314892_SNP [dm3] 3L_12321792_SNP [dm6]	T	C	3.394e^-4	0.869	INTERGENIC
X	19611096	X_19611096_SNP [dm3] X_19717063_SNP [dm6]	A	G	3.401e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13870716	3R_13870716_SNP [dm3] 3R_18044994_SNP [dm6]	C	T	3.401e^-4	0.869	DOWNSTREAM htl INTERGENIC
3R	26168405	3R_26168405_SNP [dm3] 3R_30342683_SNP [dm6]	T	G	3.401e^-4	0.869	INTRON hdc
3R	4296396	3R_4296396_SNP [dm3] 3R_8470674_SNP [dm6]	A	C	3.403e^-4	0.869	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
2L	20481801	2L_20481801_SNP [dm3] 2L_20481801_SNP [dm6]	T	A	3.405e^-4	0.869	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12003609	X_12003609_SNP [dm3] X_12109576_SNP [dm6]	T	C	3.406e^-4	0.869	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3L	9967144	3L_9967144_SNP [dm3] 3L_9974044_SNP [dm6]	A	T	3.408e^-4	0.869	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
2R	2072342	2R_2072342_SNP [dm3] 2R_6184837_SNP [dm6]	T	C	3.416e^-4	0.869	INTRON Ptr	TF binding site mE1_TFBS_cad
2R	2060378	2R_2060378_SNP [dm3] 2R_6172873_SNP [dm6]	C	T	3.417e^-4	0.869	UPSTREAM Cyp6w1 INTERGENIC	regulatory region REDfly_CRMs
3L	5188894	3L_5188894_SNP [dm3] 3L_5195794_SNP [dm6]	A	C	3.419e^-4	0.869	INTRON shep
2L	13702866	2L_13702866_SNP [dm3] 2L_13702866_SNP [dm6]	G	T	3.442e^-4	0.869	INTRON CG31814
2R	10446587	2R_10446587_SNP [dm3] 2R_14559082_SNP [dm6]	A	G	3.443e^-4	0.869	INTRON ttv
2L	2374388	2L_2374388_SNP [dm3] 2L_2374388_SNP [dm6]	T	C	3.444e^-4	0.869	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTRON CG3609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	15646018	3R_15646018_SNP [dm3] 3R_19820296_SNP [dm6]	G	A	3.449e^-4	0.869	INTRON bnl	TF binding site mE1_TFBS_chinmo
3L	2695630	3L_2695630_SNP [dm3] 3L_2695630_SNP [dm6]	G	A	3.449e^-4	0.869	INTRON Fife
2L	9832124	2L_9832124_SNP [dm3] 2L_9832124_SNP [dm6]	T	G	3.449e^-4	0.869	INTRON nAChRalpha6
3R	23137272	3R_23137272_SNP [dm3] 3R_27311550_SNP [dm6]	C	T	3.450e^-4	0.869	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10543382	3R_10543382_SNP [dm3] 3R_14717660_SNP [dm6]	A	C	3.452e^-4	0.869	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5168521	2L_5168521_SNP [dm3] 2L_5168521_SNP [dm6]	T	C	3.454e^-4	0.869	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	16890103	X_16890103_SNP [dm3] X_16996070_SNP [dm6]	A	G	3.455e^-4	0.869	INTRON CG45002
X	18672844	X_18672844_SNP [dm3] X_18778811_SNP [dm6]	G	A	3.462e^-4	0.869	UPSTREAM CG6891 INTRON CG6891
2L	742803	2L_742803_INS [dm3] 2L_742803_INS [dm6]	A	ACATA	3.466e^-4	0.869	INTRON Eaat2
3L	4619427	3L_4619427_SNP [dm3] 3L_4619427_SNP [dm6]	A	T	3.466e^-4	0.869	INTRON Src64B
2L	5881367	2L_5881367_SNP [dm3] 2L_5881367_SNP [dm6]	C	T	3.468e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8401391	2L_8401391_SNP [dm3] 2L_8401391_SNP [dm6]	T	C	3.477e^-4	0.869	NON_SYNONYMOUS_CODING CG31898 DOWNSTREAM fy
2L	6922953	2L_6922953_SNP [dm3] 2L_6922953_SNP [dm6]	C	G	3.479e^-4	0.869	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	3.486e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9179960	2L_9179960_INS [dm3] 2L_9179960_INS [dm6]	C	TA	3.508e^-4	0.869	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9390410	2L_9390410_SNP [dm3] 2L_9390410_SNP [dm6]	C	T	3.508e^-4	0.869	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	3.511e^-4	0.869	INTERGENIC
3L	2904046	3L_2904046_SNP [dm3] 3L_2904046_SNP [dm6]	T	A	3.514e^-4	0.869	INTRON Shab
2L	3895293	2L_3895293_SNP [dm3] 2L_3895293_SNP [dm6]	T	A	3.523e^-4	0.869	INTRON capu
2L	9380726	2L_9380726_SNP [dm3] 2L_9380726_SNP [dm6]	A	T	3.524e^-4	0.869	INTRON Shawl
2L	13941607	2L_13941607_DEL [dm3] 2L_13941607_DEL [dm6]	TT	T	3.526e^-4	0.869	INTRON Ance-3
2L	6923067	2L_6923067_SNP [dm3] 2L_6923067_SNP [dm6]	A	G	3.529e^-4	0.869	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15456565	X_15456565_SNP [dm3] X_15562532_SNP [dm6]	C	T	3.529e^-4	0.869	INTERGENIC
2R	18174183	2R_18174183_SNP [dm3] 2R_22286678_SNP [dm6]	T	A	3.534e^-4	0.869	DOWNSTREAM dve INTERGENIC
2R	16879652	2R_16879652_SNP [dm3] 2R_20992147_SNP [dm6]	A	C	3.542e^-4	0.869	UPSTREAM CG3216 DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7890075	2R_7890075_SNP [dm3] 2R_12002570_SNP [dm6]	T	C	3.545e^-4	0.869	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18579346	2R_18579346_SNP [dm3] 2R_22691841_SNP [dm6]	A	T	3.549e^-4	0.869	DOWNSTREAM robo EXON CR44764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9896471	3R_9896471_SNP [dm3] 3R_14070749_SNP [dm6]	A	T	3.553e^-4	0.869	INTRON foxo
2L	5168510	2L_5168510_SNP [dm3] 2L_5168510_SNP [dm6]	C	T	3.564e^-4	0.869	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	9967376	3L_9967376_SNP [dm3] 3L_9974276_SNP [dm6]	T	A	3.576e^-4	0.869	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
X	16858173	X_16858173_SNP [dm3] X_16964140_SNP [dm6]	A	G	3.578e^-4	0.869	INTRON CG9086
2L	9264353	2L_9264353_SNP [dm3] 2L_9264353_SNP [dm6]	G	T	3.588e^-4	0.869	INTRON Ggamma30A
X	15171557	X_15171557_SNP [dm3] X_15277524_SNP [dm6]	T	A	3.591e^-4	0.869	INTERGENIC
2L	9525629	2L_9525629_SNP [dm3] 2L_9525629_SNP [dm6]	A	C	3.592e^-4	0.869	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	16415522	2R_16415522_SNP [dm3] 2R_20528017_SNP [dm6]	G	C	3.595e^-4	0.869	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18099320	X_18099320_SNP [dm3] X_18205287_SNP [dm6]	T	C	3.615e^-4	0.869	UPSTREAM Her DOWNSTREAM Frq2 INTERGENIC
3R	16766591	3R_16766591_SNP [dm3] 3R_20940869_SNP [dm6]	A	T	3.616e^-4	0.869	INTRON CG31191
3L	2290295	3L_2290295_SNP [dm3] 3L_2290295_SNP [dm6]	T	G	3.616e^-4	0.869	INTRON MsR2
2L	2052591	2L_2052591_SNP [dm3] 2L_2052591_SNP [dm6]	C	G	3.627e^-4	0.869	INTERGENIC
2R	16052972	2R_16052972_SNP [dm3] 2R_20165467_SNP [dm6]	C	A	3.636e^-4	0.869	INTERGENIC
2L	10536105	2L_10536105_SNP [dm3] 2L_10536105_SNP [dm6]	A	G	3.637e^-4	0.869	SYNONYMOUS_CODING CG18302
2L	3665036	2L_3665036_SNP [dm3] 2L_3665036_SNP [dm6]	A	C	3.644e^-4	0.869	INTRON CG34340
2L	8836325	2L_8836325_SNP [dm3] 2L_8836325_SNP [dm6]	C	A	3.646e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	15096093	2L_15096093_SNP [dm3] 2L_15096093_SNP [dm6]	C	T	3.650e^-4	0.869	UTR_3_PRIME CG15270
X	9282806	X_9282806_SNP [dm3] X_9388773_SNP [dm6]	T	A	3.651e^-4	0.869	INTRON mgl
2L	3386098	2L_3386098_SNP [dm3] 2L_3386098_SNP [dm6]	G	T	3.652e^-4	0.869	DOWNSTREAM CR45301 INTERGENIC
X	11938626	X_11938626_SNP [dm3] X_12044593_SNP [dm6]	A	T	3.653e^-4	0.869	INTRON CR43960 & 1 other
2R	18707777	2R_18707777_SNP [dm3] 2R_22820272_SNP [dm6]	C	G	3.655e^-4	0.869	NON_SYNONYMOUS_CODING CG30271	TF binding site mE1_TFBS_chinmo
2R	15487561	2R_15487561_SNP [dm3] 2R_19600056_SNP [dm6]	G	A	3.655e^-4	0.869	INTRON sm
X	19481130	X_19481130_SNP [dm3] X_19587097_SNP [dm6]	A	C	3.655e^-4	0.869	DOWNSTREAM CG14219 & 1 other INTERGENIC
2L	4013213	2L_4013213_SNP [dm3] 2L_4013213_SNP [dm6]	T	C	3.658e^-4	0.869	INTERGENIC
3L	18834388	3L_18834388_SNP [dm3] 3L_18841288_SNP [dm6]	T	A	3.659e^-4	0.869	UTR_5_PRIME Indy UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24132529	3R_24132529_SNP [dm3] 3R_28306807_SNP [dm6]	A	T	3.661e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8632495	2L_8632495_SNP [dm3] 2L_8632495_SNP [dm6]	T	A	3.662e^-4	0.869	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3771751	3L_3771751_SNP [dm3] 3L_3771751_SNP [dm6]	A	C	3.670e^-4	0.869	INTRON CG32264
3L	18833996	3L_18833996_SNP [dm3] 3L_18840896_SNP [dm6]	A	G	3.676e^-4	0.869	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20035504	2L_20035504_SNP [dm3] 2L_20035504_SNP [dm6]	T	A	3.678e^-4	0.869	INTRON sNPF	TF binding site mE1_TFBS_inv
3R	22235954	3R_22235954_SNP [dm3] 3R_26410232_SNP [dm6]	C	T	3.689e^-4	0.869	INTERGENIC
2L	1622791	2L_1622791_SNP [dm3] 2L_1622791_SNP [dm6]	T	C	3.692e^-4	0.869	EXON CR44603
3L	2798555	3L_2798555_SNP [dm3] 3L_2798555_SNP [dm6]	C	T	3.697e^-4	0.869	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18763510	3L_18763510_SNP [dm3] 3L_18770410_SNP [dm6]	T	C	3.704e^-4	0.869	INTRON ftz-f1
3L	9850030	3L_9850030_SNP [dm3] 3L_9856930_SNP [dm6]	C	A	3.706e^-4	0.869	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7277517	2R_7277517_SNP [dm3] 2R_11390012_SNP [dm6]	T	A	3.709e^-4	0.869	INTRON sprt
2L	16229300	2L_16229300_SNP [dm3] 2L_16229300_SNP [dm6]	T	G	3.714e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3490811	3L_3490811_SNP [dm3] 3L_3490811_SNP [dm6]	A	T	3.716e^-4	0.869	INTRON CG42324
2R	1964125	2R_1964125_SNP [dm3] 2R_6076620_SNP [dm6]	A	G	3.718e^-4	0.869	UPSTREAM CG7849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	3.719e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22229200	3R_22229200_SNP [dm3] 3R_26403478_SNP [dm6]	G	T	3.721e^-4	0.869	INTRON ppk15
2R	16615947	2R_16615947_SNP [dm3] 2R_20728442_SNP [dm6]	G	A	3.723e^-4	0.869	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9130837	3R_9130837_SNP [dm3] 3R_13305115_SNP [dm6]	G	A	3.732e^-4	0.869	INTRON CG32473	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15826657	3R_15826657_SNP [dm3] 3R_20000935_SNP [dm6]	G	T	3.733e^-4	0.869	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	12255047	X_12255047_SNP [dm3] X_12361014_SNP [dm6]	A	G	3.738e^-4	0.869	INTERGENIC
2L	11163396	2L_11163396_SNP [dm3] 2L_11163396_SNP [dm6]	G	A	3.740e^-4	0.869	SPLICE_SITE_REGION Ca-beta INTRON Ca-beta
2L	3666101	2L_3666101_SNP [dm3] 2L_3666101_SNP [dm6]	C	T	3.753e^-4	0.869	INTRON CG34340
3L	6343106	3L_6343106_SNP [dm3] 3L_6350006_SNP [dm6]	C	A	3.755e^-4	0.869	UPSTREAM Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z
3L	6343157	3L_6343157_SNP [dm3] 3L_6350057_SNP [dm6]	C	T	3.755e^-4	0.869	UPSTREAM Sfp65A INTRON CG13300
2R	16879730	2R_16879730_SNP [dm3] 2R_20992225_SNP [dm6]	C	T	3.759e^-4	0.869	DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18751259	2L_18751259_SNP [dm3] 2L_18751259_SNP [dm6]	G	A	3.767e^-4	0.869	INTERGENIC
X	16795830	X_16795830_SNP [dm3] X_16901797_SNP [dm6]	G	A	3.773e^-4	0.869	EXON CR44754
2L	3895109	2L_3895109_SNP [dm3] 2L_3895109_SNP [dm6]	G	T	3.775e^-4	0.869	INTRON capu	TF binding site mE1_TFBS_kn
3R	5019827	3R_5019827_SNP [dm3] 3R_9194105_SNP [dm6]	T	A	3.781e^-4	0.869	INTRON pum	TF binding site mE1_TFBS_kn
2L	3662069	2L_3662069_SNP [dm3] 2L_3662069_SNP [dm6]	C	A	3.784e^-4	0.869	UPSTREAM CG34340 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11199273	2L_11199273_SNP [dm3] 2L_11199273_SNP [dm6]	C	G	3.791e^-4	0.869	INTRON Ca-beta
3R	26138439	3R_26138439_SNP [dm3] 3R_30312717_SNP [dm6]	G	A	3.798e^-4	0.869	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	10634043	3R_10634043_SNP [dm3] 3R_14808321_SNP [dm6]	A	G	3.801e^-4	0.869	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16230156	X_16230156_INS [dm3] X_16336123_INS [dm6]	T	TAACTTTCGT	3.813e^-4	0.869	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11497964	2L_11497964_SNP [dm3] 2L_11497964_SNP [dm6]	C	T	3.815e^-4	0.869	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15865962	3L_15865962_SNP [dm3] 3L_15872862_SNP [dm6]	A	T	3.820e^-4	0.869	INTRON pHCl
2R	16109071	2R_16109071_SNP [dm3] 2R_20221566_SNP [dm6]	A	T	3.830e^-4	0.869	EXON CR45423
2L	8706771	2L_8706771_SNP [dm3] 2L_8706771_SNP [dm6]	G	T	3.841e^-4	0.869	SYNONYMOUS_CODING CG9314 INTRON Hnf4
X	6149689	X_6149689_SNP [dm3] X_6255656_SNP [dm6]	G	C	3.852e^-4	0.869	UPSTREAM Spx & 1 other INTERGENIC
2L	12573227	2L_12573227_SNP [dm3] 2L_12573227_SNP [dm6]	C	G	3.852e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12573240	2L_12573240_SNP [dm3] 2L_12573240_SNP [dm6]	G	T	3.860e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19170564	X_19170564_SNP [dm3] X_19276531_SNP [dm6]	T	C	3.861e^-4	0.869	SYNONYMOUS_CODING CG32536 UTR_5_PRIME CG32537 DOWNSTREAM CG8028
2L	14307189	2L_14307189_SNP [dm3] 2L_14307189_SNP [dm6]	A	G	3.862e^-4	0.869	INTRON wb
3L	13937200	3L_13937200_SNP [dm3] 3L_13944100_SNP [dm6]	A	G	3.865e^-4	0.869	INTRON CG32137
2L	8995635	2L_8995635_SNP [dm3] 2L_8995635_SNP [dm6]	C	T	3.887e^-4	0.869	SYNONYMOUS_CODING alien DOWNSTREAM CG17906
2L	8662094	2L_8662094_SNP [dm3] 2L_8662094_SNP [dm6]	T	A	3.895e^-4	0.869	INTRON Sema-1a
3L	5224255	3L_5224255_DEL [dm3] 3L_5231155_DEL [dm6]	CTTA	G	3.895e^-4	0.869	INTRON shep
2L	7797988	2L_7797988_SNP [dm3] 2L_7797988_SNP [dm6]	C	T	3.900e^-4	0.869	INTRON Herp
X	14602750	X_14602750_SNP [dm3] X_14708717_SNP [dm6]	G	A	3.903e^-4	0.869	INTRON NetB
3L	5174524	3L_5174524_SNP [dm3] 3L_5181424_SNP [dm6]	C	A	3.904e^-4	0.869	INTRON shep
2L	10112137	2L_10112137_SNP [dm3] 2L_10112137_SNP [dm6]	T	G	3.913e^-4	0.869	INTRON CG44153 & 1 other
2L	10783939	2L_10783939_SNP [dm3] 2L_10783939_SNP [dm6]	T	C	3.917e^-4	0.869	INTRON CG31869
3L	4481557	3L_4481557_SNP [dm3] 3L_4481557_SNP [dm6]	G	T	3.920e^-4	0.869	DOWNSTREAM CG7465 INTERGENIC
2R	16879709	2R_16879709_SNP [dm3] 2R_20992204_SNP [dm6]	A	C	3.920e^-4	0.869	DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17191514	3L_17191514_DEL [dm3] 3L_17198414_DEL [dm6]	CT	C	3.937e^-4	0.869	INTRON Rbp6
3L	1280664	3L_1280664_SNP [dm3] 3L_1280664_SNP [dm6]	C	T	3.940e^-4	0.869	INTRON CG32333
3L	7801953	3L_7801953_INS [dm3] 3L_7808853_INS [dm6]	A	AGA	3.947e^-4	0.869	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12900270	3L_12900270_SNP [dm3] 3L_12907170_SNP [dm6]	A	G	3.951e^-4	0.869	INTERGENIC
2L	16084574	2L_16084574_SNP [dm3] 2L_16084574_SNP [dm6]	T	C	3.953e^-4	0.869	INTERGENIC
2R	1964058	2R_1964058_SNP [dm3] 2R_6076553_SNP [dm6]	T	G	3.959e^-4	0.869	UPSTREAM CG7849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	14203839	3R_14203839_SNP [dm3] 3R_18378117_SNP [dm6]	C	A	3.960e^-4	0.869	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14220631	2L_14220631_SNP [dm3] 2L_14220631_SNP [dm6]	G	A	3.962e^-4	0.869	INTRON Dyrk2
3R	20415525	3R_20415525_SNP [dm3] 3R_24589803_SNP [dm6]	C	T	3.962e^-4	0.869	INTRON mld	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16158515	X_16158515_SNP [dm3] X_16264482_SNP [dm6]	T	A	3.966e^-4	0.869	DOWNSTREAM CG12507 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6343156	3L_6343156_SNP [dm3] 3L_6350056_SNP [dm6]	A	C	3.967e^-4	0.869	UPSTREAM Sfp65A INTRON CG13300
X	21277849	X_21277849_DEL [dm3] X_21406822_DEL [dm6]	CC	C	3.975e^-4	0.869	INTERGENIC
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	3.977e^-4	0.869	INTERGENIC
2L	744168	2L_744168_SNP [dm3] 2L_744168_SNP [dm6]	G	C	3.985e^-4	0.869	UTR_5_PRIME Eaat2 INTRON Eaat2
2L	20035432	2L_20035432_SNP [dm3] 2L_20035432_SNP [dm6]	G	A	3.986e^-4	0.869	INTRON sNPF	TF binding site mE1_TFBS_inv
3R	5010883	3R_5010883_SNP [dm3] 3R_9185161_SNP [dm6]	T	G	3.991e^-4	0.869	INTRON pum
2R	18707857	2R_18707857_SNP [dm3] 2R_22820352_SNP [dm6]	T	C	4.019e^-4	0.869	INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	12923013	2L_12923013_SNP [dm3] 2L_12923013_SNP [dm6]	C	T	4.021e^-4	0.869	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	9184540	2L_9184540_SNP [dm3] 2L_9184540_SNP [dm6]	A	T	4.023e^-4	0.869	INTRON tai
2R	9889446	2R_9889446_SNP [dm3] 2R_14001941_SNP [dm6]	G	C	4.027e^-4	0.869	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5190120	3L_5190120_DEL [dm3] 3L_5197020_DEL [dm6]	AGAAAATGTGAAAT...	A	4.029e^-4	0.869	INTRON shep
3L	6343130	3L_6343130_SNP [dm3] 3L_6350030_SNP [dm6]	C	T	4.034e^-4	0.869	UPSTREAM Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z
2R	19813509	2R_19813509_SNP [dm3] 2R_23925986_SNP [dm6]	A	G	4.036e^-4	0.869	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4322173	X_4322173_DEL [dm3] X_4428140_DEL [dm6]	GT	A	4.052e^-4	0.869	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	12374381	2L_12374381_SNP [dm3] 2L_12374381_SNP [dm6]	T	C	4.066e^-4	0.869	INTRON bru-2
3R	11195066	3R_11195066_SNP [dm3] 3R_15369344_SNP [dm6]	G	T	4.071e^-4	0.869	SYNONYMOUS_CODING CG14868 DOWNSTREAM CG6136	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12255108	X_12255108_SNP [dm3] X_12361075_SNP [dm6]	T	A	4.076e^-4	0.869	INTERGENIC
3L	23487181	3L_23487181_SNP [dm3] 3L_23494081_SNP [dm6]	A	C	4.076e^-4	0.869	INTERGENIC	transposable element FlyBase
3L	20929972	3L_20929972_INS [dm3] 3L_20936872_INS [dm6]	A	AAT	4.082e^-4	0.869	INTRON fng
3R	13481273	3R_13481273_SNP [dm3] 3R_17655551_SNP [dm6]	A	G	4.088e^-4	0.869	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
2R	18219132	2R_18219132_SNP [dm3] 2R_22331627_SNP [dm6]	T	G	4.102e^-4	0.869	SYNONYMOUS_CODING T3dh UPSTREAM pgc INTRON pgc
2R	6326869	2R_6326869_SNP [dm3] 2R_10439364_SNP [dm6]	C	T	4.103e^-4	0.869	UPSTREAM Galphao INTRON Galphao
3R	6550432	3R_6550432_SNP [dm3] 3R_10724710_SNP [dm6]	G	A	4.121e^-4	0.869	INTERGENIC
2L	9831949	2L_9831949_SNP [dm3] 2L_9831949_SNP [dm6]	C	T	4.134e^-4	0.869	INTRON nAChRalpha6
X	7703247	X_7703247_SNP [dm3] X_7809214_SNP [dm6]	G	A	4.136e^-4	0.869	INTERGENIC
3R	22732744	3R_22732744_SNP [dm3] 3R_26907022_SNP [dm6]	A	C	4.136e^-4	0.869	INTRON T48	regulatory region REDfly_CRMs
3R	20440102	3R_20440102_SNP [dm3] 3R_24614380_SNP [dm6]	T	C	4.138e^-4	0.869	INTRON mld
2L	5297229	2L_5297229_SNP [dm3] 2L_5297229_SNP [dm6]	G	A	4.142e^-4	0.869	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10528949	3R_10528949_SNP [dm3] 3R_14703227_SNP [dm6]	T	C	4.144e^-4	0.869	INTRON kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12525830	2L_12525830_SNP [dm3] 2L_12525830_SNP [dm6]	A	C	4.146e^-4	0.869	INTRON bun
2R	18707825	2R_18707825_SNP [dm3] 2R_22820320_SNP [dm6]	C	T	4.148e^-4	0.869	SYNONYMOUS_CODING CG30271	TF binding site mE1_TFBS_chinmo
3L	5197496	3L_5197496_SNP [dm3] 3L_5204396_SNP [dm6]	A	T	4.150e^-4	0.869	INTRON shep
3L	8968474	3L_8968474_SNP [dm3] 3L_8975374_SNP [dm6]	C	T	4.151e^-4	0.869	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	18671581	X_18671581_SNP [dm3] X_18777548_SNP [dm6]	A	G	4.152e^-4	0.869	INTRON CG6891
3R	24129749	3R_24129749_SNP [dm3] 3R_28304027_SNP [dm6]	T	G	4.160e^-4	0.869	NON_SYNONYMOUS_CODING CG12516
3R	26473202	3R_26473202_SNP [dm3] 3R_30647480_SNP [dm6]	C	T	4.160e^-4	0.869	SYNONYMOUS_CODING PH4alphaPV	TF binding site mE1_TFBS_sens
3R	26474641	3R_26474641_SNP [dm3] 3R_30648919_SNP [dm6]	C	T	4.160e^-4	0.869	UPSTREAM CG34432 & 1 other INTERGENIC
3L	23521094	3L_23521094_SNP [dm3] 3L_23527994_SNP [dm6]	G	T	4.162e^-4	0.869	INTERGENIC	transposable element FlyBase
2L	743927	2L_743927_SNP [dm3] 2L_743927_SNP [dm6]	A	G	4.164e^-4	0.869	INTRON Eaat2
3L	8538167	3L_8538167_SNP [dm3] 3L_8545067_SNP [dm6]	A	T	4.171e^-4	0.869	START_GAINED rhea UTR_5_PRIME rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4702990	2L_4702990_SNP [dm3] 2L_4702990_SNP [dm6]	G	T	4.172e^-4	0.869	INTRON CG34351
3L	6812297	3L_6812297_SNP [dm3] 3L_6819197_SNP [dm6]	A	G	4.181e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	7111979	2L_7111979_SNP [dm3] 2L_7111979_SNP [dm6]	T	G	4.181e^-4	0.869	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22063504	3R_22063504_SNP [dm3] 3R_26237782_SNP [dm6]	T	A	4.184e^-4	0.869	INTRON CR42745
2R	14319106	2R_14319106_SNP [dm3] 2R_18431601_SNP [dm6]	C	T	4.196e^-4	0.869	SYNONYMOUS_CODING CG30118	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12636485	3L_12636485_SNP [dm3] 3L_12643385_SNP [dm6]	G	C	4.214e^-4	0.869	INTRON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18913493	X_18913493_SNP [dm3] X_19019460_SNP [dm6]	G	A	4.220e^-4	0.869	INTRON CG43759
3R	24567514	3R_24567514_SNP [dm3] 3R_28741792_SNP [dm6]	G	C	4.220e^-4	0.869	INTRON AstA-R2
3L	2907855	3L_2907855_SNP [dm3] 3L_2907855_SNP [dm6]	C	T	4.222e^-4	0.869	INTRON Shab
2L	15125797	2L_15125797_SNP [dm3] 2L_15125797_SNP [dm6]	A	C	4.224e^-4	0.869	INTERGENIC
2R	16615923	2R_16615923_SNP [dm3] 2R_20728418_SNP [dm6]	G	T	4.224e^-4	0.869	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7890009	2L_7890009_SNP [dm3] 2L_7890009_SNP [dm6]	G	A	4.247e^-4	0.869	SYNONYMOUS_CODING Spn28Db UPSTREAM Spn28Da	TF binding site mE1_TFBS_sens
2L	7837478	2L_7837478_SNP [dm3] 2L_7837478_SNP [dm6]	A	T	4.249e^-4	0.869	INTERGENIC
3L	10560053	3L_10560053_SNP [dm3] 3L_10566953_SNP [dm6]	C	T	4.253e^-4	0.869	INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	8026563	3L_8026563_SNP [dm3] 3L_8033463_SNP [dm6]	G	A	4.253e^-4	0.869	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	2321584	2L_2321584_SNP [dm3] 2L_2321584_SNP [dm6]	A	G	4.257e^-4	0.869	INTRON CG9967 & 1 other
3L	4239411	3L_4239411_SNP [dm3] 3L_4239411_SNP [dm6]	A	G	4.262e^-4	0.869	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10236973	3L_10236973_SNP [dm3] 3L_10243873_SNP [dm6]	A	G	4.266e^-4	0.869	UPSTREAM CR44541 INTRON Or67c
3R	26643963	3R_26643963_SNP [dm3] 3R_30818241_SNP [dm6]	C	A	4.269e^-4	0.869	INTRON cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	10856471	2R_10856471_SNP [dm3] 2R_14968966_SNP [dm6]	T	A	4.270e^-4	0.869	INTRON ckn	TF binding site BDTNP1_TFBS_dl
X	9750308	X_9750308_SNP [dm3] X_9856275_SNP [dm6]	C	T	4.272e^-4	0.869	DOWNSTREAM CG32698 INTERGENIC
2L	8655991	2L_8655991_SNP [dm3] 2L_8655991_SNP [dm6]	C	T	4.276e^-4	0.869	INTRON Sema-1a
3L	17157743	3L_17157743_SNP [dm3] 3L_17164643_SNP [dm6]	G	C	4.286e^-4	0.869	INTRON Rbp6
3R	15826660	3R_15826660_SNP [dm3] 3R_20000938_SNP [dm6]	C	T	4.288e^-4	0.869	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	1750927	3R_1750927_SNP [dm3] 3R_5925205_SNP [dm6]	G	A	4.298e^-4	0.869	INTRON CG34113
X	16177211	X_16177211_SNP [dm3] X_16283178_SNP [dm6]	T	A	4.298e^-4	0.869	INTRON eas	TF binding site BDTNP1_TFBS_dl
X	5084111	X_5084111_DEL [dm3] X_5190078_DEL [dm6]	TTGTGCCTGTATGTGTGTGC...	T	4.303e^-4	0.869	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14439223	2R_14439223_SNP [dm3] 2R_18551718_SNP [dm6]	A	G	4.304e^-4	0.869	INTERGENIC
2L	15124490	2L_15124490_SNP [dm3] 2L_15124490_SNP [dm6]	A	G	4.306e^-4	0.869	INTERGENIC
2R	2060062	2R_2060062_SNP [dm3] 2R_6172557_SNP [dm6]	G	A	4.306e^-4	0.869	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
2R	18707862	2R_18707862_SNP [dm3] 2R_22820357_SNP [dm6]	C	T	4.312e^-4	0.869	INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	9968505	2L_9968505_SNP [dm3] 2L_9968505_SNP [dm6]	A	T	4.312e^-4	0.869	UTR_3_PRIME RpL13 DOWNSTREAM RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3989087	2L_3989087_SNP [dm3] 2L_3989087_SNP [dm6]	T	A	4.314e^-4	0.869	INTRON fred	TF binding site mE1_TFBS_bab1
3L	20903596	3L_20903596_SNP [dm3] 3L_20910496_SNP [dm6]	A	C	4.314e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4233383	3L_4233383_SNP [dm3] 3L_4233383_SNP [dm6]	T	C	4.319e^-4	0.869	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5869217	X_5869217_DEL [dm3] X_5975184_DEL [dm6]	TCATTTTT	T	4.329e^-4	0.869	INTRON Grip
3R	15732450	3R_15732450_SNP [dm3] 3R_19906728_SNP [dm6]	G	C	4.330e^-4	0.869	UPSTREAM CR45047 INTRON RhoGAP92B
2L	3828655	2L_3828655_DEL [dm3] 2L_3828655_DEL [dm6]	TGCAATAAATCAGTTAACAG...	T	4.335e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	10545048	3R_10545048_SNP [dm3] 3R_14719326_SNP [dm6]	C	A	4.335e^-4	0.869	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19074832	2R_19074832_SNP [dm3] 2R_23187309_SNP [dm6]	G	A	4.337e^-4	0.869	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	5072642	3R_5072642_SNP [dm3] 3R_9246920_SNP [dm6]	A	G	4.341e^-4	0.869	UTR_5_PRIME CG8420 UPSTREAM CG8420	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15835256	3L_15835256_SNP [dm3] 3L_15842156_SNP [dm6]	C	T	4.352e^-4	0.869	INTRON CG32150
2L	9292771	2L_9292771_SNP [dm3] 2L_9292771_SNP [dm6]	C	G	4.356e^-4	0.869	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A
2L	12525869	2L_12525869_SNP [dm3] 2L_12525869_SNP [dm6]	G	A	4.368e^-4	0.869	INTRON bun
3L	2134443	3L_2134443_SNP [dm3] 3L_2134443_SNP [dm6]	A	G	4.371e^-4	0.869	SYNONYMOUS_CODING zormin
3L	21947121	3L_21947121_SNP [dm3] 3L_21954021_SNP [dm6]	A	G	4.372e^-4	0.869	INTERGENIC
2L	6923108	2L_6923108_SNP [dm3] 2L_6923108_SNP [dm6]	A	G	4.374e^-4	0.869	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16101645	2R_16101645_SNP [dm3] 2R_20214140_SNP [dm6]	T	A	4.375e^-4	0.869	INTERGENIC
3R	27798168	3R_27798168_SNP [dm3] 3R_31972446_SNP [dm6]	A	G	4.385e^-4	0.869	INTRON heph
2L	15976991	2L_15976991_SNP [dm3] 2L_15976991_SNP [dm6]	G	C	4.396e^-4	0.869	INTERGENIC
3L	21142693	3L_21142693_SNP [dm3] 3L_21149593_SNP [dm6]	G	T	4.401e^-4	0.869	INTRON Ac78C
2L	16228144	2L_16228144_DEL [dm3] 2L_16228144_DEL [dm6]	AGCCCTGCTA	A	4.404e^-4	0.869	INTERGENIC
3R	12929228	3R_12929228_SNP [dm3] 3R_17103506_SNP [dm6]	A	T	4.409e^-4	0.869	INTRON cher
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	4.409e^-4	0.869	INTERGENIC
2L	3895381	2L_3895381_SNP [dm3] 2L_3895381_SNP [dm6]	A	G	4.425e^-4	0.869	INTRON capu
X	16159539	X_16159539_SNP [dm3] X_16265506_SNP [dm6]	C	T	4.428e^-4	0.869	SYNONYMOUS_CODING CG12507
3L	12446923	3L_12446923_SNP [dm3] 3L_12453823_SNP [dm6]	G	A	4.446e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4619417	3L_4619417_SNP [dm3] 3L_4619417_SNP [dm6]	T	A	4.447e^-4	0.869	INTRON Src64B
3R	7467741	3R_7467741_SNP [dm3] 3R_11642019_SNP [dm6]	C	T	4.447e^-4	0.869	INTRON Csk
3L	9943281	3L_9943281_SNP [dm3] 3L_9950181_SNP [dm6]	T	A	4.448e^-4	0.869	INTRON CG34356
2R	1964126	2R_1964126_SNP [dm3] 2R_6076621_SNP [dm6]	A	G	4.448e^-4	0.869	UPSTREAM CG7849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17761278	3L_17761278_SNP [dm3] 3L_17768178_SNP [dm6]	C	A	4.450e^-4	0.869	INTERGENIC
3L	17761289	3L_17761289_SNP [dm3] 3L_17768189_SNP [dm6]	C	T	4.450e^-4	0.869	INTERGENIC
3R	26781384	3R_26781384_SNP [dm3] 3R_30955662_SNP [dm6]	G	T	4.450e^-4	0.869	INTERGENIC
3R	26781385	3R_26781385_SNP [dm3] 3R_30955663_SNP [dm6]	A	G	4.450e^-4	0.869	INTERGENIC
3L	11394261	3L_11394261_SNP [dm3] 3L_11401161_SNP [dm6]	C	T	4.458e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16159145	X_16159145_SNP [dm3] X_16265112_SNP [dm6]	T	A	4.470e^-4	0.869	DOWNSTREAM CG12507 INTERGENIC
3L	4415308	3L_4415308_SNP [dm3] 3L_4415308_SNP [dm6]	A	C	4.478e^-4	0.869	INTRON DOR
3L	2836847	3L_2836847_SNP [dm3] 3L_2836847_SNP [dm6]	G	A	4.479e^-4	0.869	INTRON CG43444
3L	8908913	3L_8908913_SNP [dm3] 3L_8915813_SNP [dm6]	A	T	4.479e^-4	0.869	DOWNSTREAM CR43970 INTRON Tsp66E
3R	13947220	3R_13947220_SNP [dm3] 3R_18121498_SNP [dm6]	G	T	4.480e^-4	0.869	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13950694	2L_13950694_SNP [dm3] 2L_13950694_SNP [dm6]	A	C	4.498e^-4	0.869	INTRON Ance-3
2L	3391917	2L_3391917_SNP [dm3] 2L_3391917_SNP [dm6]	C	G	4.499e^-4	0.869	INTERGENIC
2L	3487249	2L_3487249_SNP [dm3] 2L_3487249_SNP [dm6]	G	A	4.500e^-4	0.869	INTRON CG15414
2L	6285777	2L_6285777_SNP [dm3] 2L_6285777_SNP [dm6]	C	T	4.515e^-4	0.869	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22241987	3R_22241987_SNP [dm3] 3R_26416265_SNP [dm6]	G	T	4.516e^-4	0.869	DOWNSTREAM CG5432 INTERGENIC
X	16177291	X_16177291_SNP [dm3] X_16283258_SNP [dm6]	T	C	4.527e^-4	0.869	INTRON eas	TF binding site BDTNP1_TFBS_dl
3R	26808982	3R_26808982_INS [dm3] 3R_30983260_INS [dm6]	A	AATTTTA	4.529e^-4	0.869	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6689350	X_6689350_SNP [dm3] X_6795317_SNP [dm6]	A	C	4.531e^-4	0.869	INTRON C3G	TF binding site mE1_TFBS_Kr
2L	12525856	2L_12525856_SNP [dm3] 2L_12525856_SNP [dm6]	A	C	4.543e^-4	0.869	INTRON bun
3L	10451161	3L_10451161_SNP [dm3] 3L_10458061_SNP [dm6]	G	A	4.549e^-4	0.869	INTERGENIC
3L	10233234	3L_10233234_SNP [dm3] 3L_10240134_SNP [dm6]	T	G	4.550e^-4	0.869	EXON CR45403
3L	9230661	3L_9230661_SNP [dm3] 3L_9237561_SNP [dm6]	G	A	4.553e^-4	0.869	UPSTREAM CG4483 INTERGENIC
3L	17157707	3L_17157707_SNP [dm3] 3L_17164607_SNP [dm6]	A	G	4.555e^-4	0.869	INTRON Rbp6
X	15172213	X_15172213_INS [dm3] X_15278180_INS [dm6]	G	GCTCG	4.567e^-4	0.869	INTERGENIC
2L	16206444	2L_16206444_SNP [dm3] 2L_16206444_SNP [dm6]	G	A	4.568e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5001394	3R_5001394_SNP [dm3] 3R_9175672_SNP [dm6]	C	A	4.588e^-4	0.869	INTRON pum
2L	1850444	2L_1850444_SNP [dm3] 2L_1850444_SNP [dm6]	A	C	4.589e^-4	0.869	INTRON wry
2L	8838069	2L_8838069_SNP [dm3] 2L_8838069_SNP [dm6]	G	T	4.596e^-4	0.869	INTERGENIC
3R	14515653	3R_14515653_SNP [dm3] 3R_18689931_SNP [dm6]	C	A	4.596e^-4	0.869	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17901668	3R_17901668_SNP [dm3] 3R_22075946_SNP [dm6]	A	T	4.599e^-4	0.869	INTRON how
3L	9965438	3L_9965438_SNP [dm3] 3L_9972338_SNP [dm6]	T	C	4.605e^-4	0.869	UTR_5_PRIME CG42455 & 1 other UPSTREAM vnc & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9873228	2R_9873228_SNP [dm3] 2R_13985723_SNP [dm6]	T	A	4.614e^-4	0.869	SYNONYMOUS_CODING RN-tre UTR_3_PRIME RN-tre DOWNSTREAM CG8067 & 1 other
X	8866928	X_8866928_SNP [dm3] X_8972895_SNP [dm6]	T	C	4.616e^-4	0.869	DOWNSTREAM CG10962 & 1 other INTRON rdgA
3R	26471029	3R_26471029_SNP [dm3] 3R_30645307_SNP [dm6]	T	C	4.618e^-4	0.869	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
3R	22229747	3R_22229747_DEL [dm3] 3R_26404025_DEL [dm6]	CACGAATTTCTT...	C	4.624e^-4	0.869	UPSTREAM ppk15 INTERGENIC
2R	16879631	2R_16879631_SNP [dm3] 2R_20992126_SNP [dm6]	A	G	4.630e^-4	0.869	UPSTREAM CG3216 DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4678302	3R_4678302_SNP [dm3] 3R_8852580_SNP [dm6]	C	T	4.642e^-4	0.869	INTRON pyd
X	18672443	X_18672443_SNP [dm3] X_18778410_SNP [dm6]	T	G	4.643e^-4	0.869	INTRON CG6891
2L	13874739	2L_13874739_SNP [dm3] 2L_13874739_SNP [dm6]	T	C	4.647e^-4	0.869	INTRON CenG1A
2L	16489150	2L_16489150_SNP [dm3] 2L_16489150_SNP [dm6]	C	A	4.654e^-4	0.869	SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	7301826	2L_7301826_SNP [dm3] 2L_7301826_SNP [dm6]	G	A	4.656e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	16207171	2L_16207171_SNP [dm3] 2L_16207171_SNP [dm6]	T	G	4.665e^-4	0.869	INTERGENIC
3R	26808535	3R_26808535_SNP [dm3] 3R_30982813_SNP [dm6]	A	T	4.666e^-4	0.869	INTRON 5-HT7
2L	9473273	2L_9473273_SNP [dm3] 2L_9473273_SNP [dm6]	G	C	4.677e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20472862	2R_20472862_SNP [dm3] 2R_24585339_SNP [dm6]	G	A	4.677e^-4	0.869	INTRON pio	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6926256	2L_6926256_SNP [dm3] 2L_6926256_SNP [dm6]	T	C	4.680e^-4	0.869	UTR_3_PRIME Hrb27C DOWNSTREAM Hrb27C INTRON Hrb27C
3L	9211931	3L_9211931_SNP [dm3] 3L_9218831_SNP [dm6]	G	A	4.681e^-4	0.869	INTERGENIC
3L	10405528	3L_10405528_INS [dm3] 3L_10412428_INS [dm6]	C	CAAC	4.684e^-4	0.869	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	13500433	2L_13500433_SNP [dm3] 2L_13500433_SNP [dm6]	A	G	4.685e^-4	0.869	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	4.693e^-4	0.869	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.102e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.067831
In_2R_NS	0.001202
In_3R_Mo	0.048752

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	10.2587	0.0059

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2118 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	15149090	3L_15149090_SNP [dm3] 3L_15155990_SNP [dm6]	T	C	3.415e^-8	0.064	SYNONYMOUS_CODING Msh6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16761643	X_16761643_SNP [dm3] X_16867610_SNP [dm6]	G	A	4.256e^-7	0.366	INTRON CG13003
X	11186504	X_11186504_SNP [dm3] X_11292471_SNP [dm6]	C	G	5.847e^-7	0.366	INTRON CG44422
3R	9401301	3R_9401301_SNP [dm3] 3R_13575579_SNP [dm6]	C	T	2.266e^-6	0.745	DOWNSTREAM CR43848 INTERGENIC
2L	12210735	2L_12210735_SNP [dm3] 2L_12210735_SNP [dm6]	T	A	2.579e^-6	0.745	DOWNSTREAM CG31759 INTRON aret
3R	21848182	3R_21848182_SNP [dm3] 3R_26022460_SNP [dm6]	A	G	2.623e^-6	0.745	SYNONYMOUS_CODING E_spl_m3-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11878083	2R_11878083_SNP [dm3] 2R_15990578_SNP [dm6]	A	G	3.351e^-6	0.745	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26649212	3R_26649212_SNP [dm3] 3R_30823490_SNP [dm6]	T	A	3.636e^-6	0.745	UPSTREAM cindr INTRON cindr
3L	9796288	3L_9796288_SNP [dm3] 3L_9803188_SNP [dm6]	C	T	4.010e^-6	0.745	DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20511208	3L_20511208_DEL [dm3] 3L_20518108_DEL [dm6]	TTT	T	4.236e^-6	0.745	UPSTREAM CG5059 INTRON CG5059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk
3R	20759813	3R_20759813_SNP [dm3] 3R_24934091_SNP [dm6]	A	T	5.213e^-6	0.745	SYNONYMOUS_CODING CG11771 DOWNSTREAM Osbp	TF binding site mE1_TFBS_chinmo
X	7204575	X_7204575_SNP [dm3] X_7310542_SNP [dm6]	T	C	5.378e^-6	0.745	SYNONYMOUS_CODING brk INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	16007340	3R_16007340_SNP [dm3] 3R_20181618_SNP [dm6]	T	C	5.639e^-6	0.745	INTERGENIC
3L	13937200	3L_13937200_SNP [dm3] 3L_13944100_SNP [dm6]	A	G	5.823e^-6	0.745	INTRON CG32137
3L	4233379	3L_4233379_SNP [dm3] 3L_4233379_SNP [dm6]	G	T	6.409e^-6	0.745	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4233392	3L_4233392_SNP [dm3] 3L_4233392_SNP [dm6]	G	A	6.599e^-6	0.745	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11878071	2R_11878071_SNP [dm3] 2R_15990566_SNP [dm6]	T	C	6.757e^-6	0.745	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11103519	2L_11103519_SNP [dm3] 2L_11103519_SNP [dm6]	C	T	8.159e^-6	0.811	INTRON Reps
3L	15150176	3L_15150176_SNP [dm3] 3L_15157076_SNP [dm6]	A	G	8.526e^-6	0.811	INTRON Msh6
3R	26582579	3R_26582579_SNP [dm3] 3R_30756857_SNP [dm6]	T	A	8.652e^-6	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13199489	X_13199489_SNP [dm3] X_13305456_SNP [dm6]	T	C	1.049e^-5	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3L	17012528	3L_17012528_SNP [dm3] 3L_17019428_SNP [dm6]	T	C	1.105e^-5	0.853	SYNONYMOUS_CODING CG7728 DOWNSTREAM CG6652	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14463362	3R_14463362_SNP [dm3] 3R_18637640_SNP [dm6]	T	C	1.132e^-5	0.853	INTRON qin & 1 other
X	8718530	X_8718530_SNP [dm3] X_8824497_SNP [dm6]	A	C	1.173e^-5	0.853	INTERGENIC
3L	19503628	3L_19503628_SNP [dm3] 3L_19510528_SNP [dm6]	G	A	1.180e^-5	0.853	INTERGENIC
2R	11091156	2R_11091156_SNP [dm3] 2R_15203651_SNP [dm6]	A	G	1.284e^-5	0.853	SYNONYMOUS_CODING CG11807 DOWNSTREAM CG42391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1969638	2R_1969638_SNP [dm3] 2R_6082133_SNP [dm6]	G	C	1.415e^-5	0.853	SYNONYMOUS_CODING Ars2 UTR_3_PRIME Ars2
3R	26649266	3R_26649266_SNP [dm3] 3R_30823544_SNP [dm6]	T	C	1.426e^-5	0.853	UPSTREAM cindr INTRON cindr
2R	11878125	2R_11878125_SNP [dm3] 2R_15990620_SNP [dm6]	G	A	1.441e^-5	0.853	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4233402	3L_4233402_SNP [dm3] 3L_4233402_SNP [dm6]	A	T	1.466e^-5	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17013801	3L_17013801_SNP [dm3] 3L_17020701_SNP [dm6]	A	G	1.539e^-5	0.853	SYNONYMOUS_CODING CG6652 DOWNSTREAM CG7728	TF binding site mE1_TFBS_cad
3R	23394366	3R_23394366_SNP [dm3] 3R_27568644_SNP [dm6]	G	C	1.562e^-5	0.853	INTRON wdb
3R	25689954	3R_25689954_SNP [dm3] 3R_29864232_SNP [dm6]	C	T	1.612e^-5	0.853	SYNONYMOUS_CODING Zip99C DOWNSTREAM snoRNA:Me28S-A2564 & 1 other
2L	16136371	2L_16136371_SNP [dm3] 2L_16136371_SNP [dm6]	A	T	1.631e^-5	0.853	UPSTREAM CR44871 INTERGENIC
2R	10031949	2R_10031949_SNP [dm3] 2R_14144444_SNP [dm6]	G	T	1.694e^-5	0.853	DOWNSTREAM mir-989 INTERGENIC
3R	4371802	3R_4371802_SNP [dm3] 3R_8546080_SNP [dm6]	C	A	1.813e^-5	0.853	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
3L	13301136	3L_13301136_SNP [dm3] 3L_13308036_SNP [dm6]	G	T	1.889e^-5	0.853	INTERGENIC
3R	3050309	3R_3050309_SNP [dm3] 3R_7224587_SNP [dm6]	A	T	1.927e^-5	0.853	INTRON CG14608
2R	16279449	2R_16279449_SNP [dm3] 2R_20391944_SNP [dm6]	A	T	1.940e^-5	0.853	INTERGENIC
3R	23257914	3R_23257914_SNP [dm3] 3R_27432192_SNP [dm6]	G	A	1.942e^-5	0.853	INTRON side
X	7204570	X_7204570_SNP [dm3] X_7310537_SNP [dm6]	C	T	1.944e^-5	0.853	SYNONYMOUS_CODING brk INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	1350858	3L_1350858_SNP [dm3] 3L_1350858_SNP [dm6]	G	A	2.151e^-5	0.853	UPSTREAM 312 & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	12366546	3L_12366546_SNP [dm3] 3L_12373446_SNP [dm6]	T	G	2.162e^-5	0.853	SYNONYMOUS_CODING Ncc69
3R	16597740	3R_16597740_SNP [dm3] 3R_20772018_SNP [dm6]	A	G	2.338e^-5	0.853	SYNONYMOUS_CODING Takl1 INTRON Syp
2L	9248038	2L_9248038_SNP [dm3] 2L_9248038_SNP [dm6]	A	T	2.477e^-5	0.853	UTR_3_PRIME tai DOWNSTREAM tai
2R	9603487	2R_9603487_SNP [dm3] 2R_13715982_SNP [dm6]	C	G	2.613e^-5	0.853	INTRON fas	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26086129	3R_26086129_SNP [dm3] 3R_30260407_SNP [dm6]	A	C	2.684e^-5	0.853	INTERGENIC
3L	839303	3L_839303_SNP [dm3] 3L_839303_SNP [dm6]	A	G	2.743e^-5	0.853	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
2L	17554583	2L_17554583_SNP [dm3] 2L_17554583_SNP [dm6]	C	T	2.768e^-5	0.853	SYNONYMOUS_CODING CG7094
3L	14392123	3L_14392123_SNP [dm3] 3L_14399023_SNP [dm6]	T	A	2.842e^-5	0.853	INTERGENIC
2R	2942985	2R_2942985_SNP [dm3] 2R_7055480_SNP [dm6]	A	G	2.959e^-5	0.853	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep INTRON Tsp42Eo
X	9343712	X_9343712_SNP [dm3] X_9449679_SNP [dm6]	T	C	3.066e^-5	0.853	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18363341	3R_18363341_SNP [dm3] 3R_22537619_SNP [dm6]	G	T	3.117e^-5	0.853	INTRON CG5326
3R	23257894	3R_23257894_SNP [dm3] 3R_27432172_SNP [dm6]	A	C	3.123e^-5	0.853	INTRON side
2R	13892698	2R_13892698_SNP [dm3] 2R_18005193_SNP [dm6]	G	T	3.128e^-5	0.853	UPSTREAM CR44419 INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13198920	X_13198920_SNP [dm3] X_13304887_SNP [dm6]	A	T	3.270e^-5	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_HSA
2L	4279046	2L_4279046_MNP [dm3] 2L_4279046_MNP [dm6]	AAA	TGG	3.315e^-5	0.853	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26611380	3R_26611380_SNP [dm3] 3R_30785658_SNP [dm6]	C	T	3.365e^-5	0.853	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15150234	3L_15150234_SNP [dm3] 3L_15157134_SNP [dm6]	G	T	3.413e^-5	0.853	SYNONYMOUS_CODING Msh6
3R	26809250	3R_26809250_INS [dm3] 3R_30983528_INS [dm6]	A	AGAA	3.470e^-5	0.853	INTRON 5-HT7
3R	25628244	3R_25628244_SNP [dm3] 3R_29802522_SNP [dm6]	G	A	3.529e^-5	0.853	SYNONYMOUS_CODING CG7834 UPSTREAM CG7789 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25807429	3R_25807429_SNP [dm3] 3R_29981707_SNP [dm6]	T	A	3.552e^-5	0.853	INTERGENIC
3R	23398457	3R_23398457_SNP [dm3] 3R_27572735_SNP [dm6]	C	A	3.612e^-5	0.853	INTRON wdb
2R	18158195	2R_18158195_SNP [dm3] 2R_22270690_SNP [dm6]	G	A	3.630e^-5	0.853	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7227353	2L_7227353_SNP [dm3] 2L_7227353_SNP [dm6]	T	C	3.631e^-5	0.853	SPLICE_SITE_REGION Ndae1 UPSTREAM CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	4233383	3L_4233383_SNP [dm3] 3L_4233383_SNP [dm6]	T	C	3.662e^-5	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21853454	3R_21853454_SNP [dm3] 3R_26027732_SNP [dm6]	G	A	3.686e^-5	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	12879895	2L_12879895_SNP [dm3] 2L_12879895_SNP [dm6]	T	A	3.753e^-5	0.853	INTERGENIC
2L	3101146	2L_3101146_SNP [dm3] 2L_3101146_SNP [dm6]	A	C	3.758e^-5	0.853	INTRON toc
X	13199020	X_13199020_SNP [dm3] X_13304987_SNP [dm6]	A	T	3.830e^-5	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018
3R	24808035	3R_24808035_SNP [dm3] 3R_28982313_SNP [dm6]	C	T	3.834e^-5	0.853	INTERGENIC
3R	20965420	3R_20965420_SNP [dm3] 3R_25139698_SNP [dm6]	A	G	3.912e^-5	0.853	UTR_3_PRIME danr
3R	26482702	3R_26482702_SNP [dm3] 3R_30656980_SNP [dm6]	A	C	3.923e^-5	0.853	INTERGENIC
3R	15074955	3R_15074955_SNP [dm3] 3R_19249233_SNP [dm6]	T	C	3.948e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	24807977	3R_24807977_SNP [dm3] 3R_28982255_SNP [dm6]	C	A	3.978e^-5	0.853	INTERGENIC
3L	834130	3L_834130_SNP [dm3] 3L_834130_SNP [dm6]	A	G	3.997e^-5	0.853	START_GAINED CG42553 UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19633105	2L_19633105_SNP [dm3] 2L_19633105_SNP [dm6]	C	G	4.082e^-5	0.853	INTRON Lar
3R	19367947	3R_19367947_SNP [dm3] 3R_23542225_SNP [dm6]	G	C	4.150e^-5	0.853	INTERGENIC
3R	16812356	3R_16812356_SNP [dm3] 3R_20986634_SNP [dm6]	A	T	4.209e^-5	0.853	UTR_3_PRIME CG43446 INTRON Calx
3L	14392121	3L_14392121_SNP [dm3] 3L_14399021_SNP [dm6]	A	G	4.274e^-5	0.853	INTERGENIC
2R	10021224	2R_10021224_SNP [dm3] 2R_14133719_SNP [dm6]	T	G	4.331e^-5	0.853	INTRON Prosap
3L	3447899	3L_3447899_SNP [dm3] 3L_3447899_SNP [dm6]	G	T	4.421e^-5	0.853	INTRON eIF5B
2R	10020532	2R_10020532_SNP [dm3] 2R_14133027_SNP [dm6]	C	T	4.440e^-5	0.853	INTRON Prosap	TF binding site mE1_TFBS_inv
X	16764148	X_16764148_DEL [dm3] X_16870115_DEL [dm6]	ATGATCAAA	A	4.451e^-5	0.853	INTRON CG13003
3L	5312731	3L_5312731_SNP [dm3] 3L_5319631_SNP [dm6]	C	A	4.577e^-5	0.853	INTERGENIC
X	8935093	X_8935093_SNP [dm3] X_9041060_SNP [dm6]	A	C	4.578e^-5	0.853	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
X	13199030	X_13199030_SNP [dm3] X_13304997_SNP [dm6]	C	T	4.638e^-5	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018
3R	14085313	3R_14085313_SNP [dm3] 3R_18259591_SNP [dm6]	C	T	4.730e^-5	0.853	INTERGENIC
3R	23257263	3R_23257263_SNP [dm3] 3R_27431541_SNP [dm6]	C	T	4.771e^-5	0.853	INTRON side
2R	1965761	2R_1965761_SNP [dm3] 2R_6078256_SNP [dm6]	G	A	4.819e^-5	0.853	DOWNSTREAM CG14590 & 1 other INTERGENIC
3R	22558397	3R_22558397_SNP [dm3] 3R_26732675_SNP [dm6]	C	T	4.918e^-5	0.853	INTERGENIC
3L	15150183	3L_15150183_SNP [dm3] 3L_15157083_SNP [dm6]	A	T	4.975e^-5	0.853	INTRON Msh6
3R	21851944	3R_21851944_SNP [dm3] 3R_26026222_SNP [dm6]	T	C	5.021e^-5	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17013798	3L_17013798_SNP [dm3] 3L_17020698_SNP [dm6]	A	G	5.035e^-5	0.853	SYNONYMOUS_CODING CG6652 DOWNSTREAM CG7728	TF binding site mE1_TFBS_cad
X	7317279	X_7317279_SNP [dm3] X_7423246_SNP [dm6]	T	A	5.060e^-5	0.853	INTERGENIC
3L	4233366	3L_4233366_SNP [dm3] 3L_4233366_SNP [dm6]	T	A	5.081e^-5	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18874267	3R_18874267_SNP [dm3] 3R_23048545_SNP [dm6]	G	A	5.129e^-5	0.853	UPSTREAM CG17121 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	5314572	3L_5314572_SNP [dm3] 3L_5321472_SNP [dm6]	G	A	5.131e^-5	0.853	INTERGENIC
2R	12601968	2R_12601968_SNP [dm3] 2R_16714463_SNP [dm6]	A	G	5.163e^-5	0.853	INTRON CG30463
3L	7833000	3L_7833000_SNP [dm3] 3L_7839900_SNP [dm6]	G	A	5.173e^-5	0.853	INTRON Pdp1	regulatory region REDfly_CRMs
2L	16490863	2L_16490863_SNP [dm3] 2L_16490863_SNP [dm6]	C	G	5.197e^-5	0.853	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2L	3367416	2L_3367416_SNP [dm3] 2L_3367416_SNP [dm6]	A	T	5.317e^-5	0.853	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
2L	620991	2L_620991_SNP [dm3] 2L_620991_SNP [dm6]	T	G	5.342e^-5	0.853	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16206479	2L_16206479_SNP [dm3] 2L_16206479_SNP [dm6]	C	A	5.380e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23256638	3R_23256638_SNP [dm3] 3R_27430916_SNP [dm6]	C	T	5.463e^-5	0.853	INTRON side
2L	14972127	2L_14972127_SNP [dm3] 2L_14972127_SNP [dm6]	A	T	5.471e^-5	0.853	UTR_5_PRIME CG42313
X	2821066	X_2821066_SNP [dm3] X_2927033_SNP [dm6]	T	C	5.498e^-5	0.853	INTRON kirre & 1 other
3R	26649213	3R_26649213_SNP [dm3] 3R_30823491_SNP [dm6]	G	A	5.536e^-5	0.853	UPSTREAM cindr INTRON cindr
3L	14434603	3L_14434603_SNP [dm3] 3L_14441503_SNP [dm6]	T	G	5.543e^-5	0.853	INTRON bbg
3R	14463559	3R_14463559_SNP [dm3] 3R_18637837_SNP [dm6]	G	T	5.563e^-5	0.853	INTRON qin & 1 other
X	10848334	X_10848334_DEL [dm3] X_10954301_DEL [dm6]	GGCCCTG	G	5.572e^-5	0.853	UTR_5_PRIME Myo10A INTRON Myo10A
2L	12835246	2L_12835246_INS [dm3] 2L_12835246_INS [dm6]	G	GG	5.683e^-5	0.853	INTERGENIC
2R	11005243	2R_11005243_SNP [dm3] 2R_15117738_SNP [dm6]	A	T	5.689e^-5	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
2R	11005250	2R_11005250_SNP [dm3] 2R_15117745_SNP [dm6]	A	T	5.689e^-5	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
3R	25807419	3R_25807419_SNP [dm3] 3R_29981697_SNP [dm6]	A	G	5.772e^-5	0.853	INTERGENIC
2R	10026913	2R_10026913_SNP [dm3] 2R_14139408_SNP [dm6]	C	T	5.819e^-5	0.853	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	12957252	2L_12957252_SNP [dm3] 2L_12957252_SNP [dm6]	C	G	6.023e^-5	0.853	INTERGENIC
3L	5314539	3L_5314539_SNP [dm3] 3L_5321439_SNP [dm6]	T	G	6.050e^-5	0.853	INTERGENIC
2R	7618830	2R_7618830_SNP [dm3] 2R_11731325_SNP [dm6]	T	A	6.056e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5167389	3L_5167389_SNP [dm3] 3L_5174289_SNP [dm6]	T	C	6.061e^-5	0.853	INTRON shep
3R	15627734	3R_15627734_SNP [dm3] 3R_19802012_SNP [dm6]	C	T	6.089e^-5	0.853	UPSTREAM tRNA:CR31471 INTRON bnl
2L	620996	2L_620996_SNP [dm3] 2L_620996_SNP [dm6]	C	T	6.152e^-5	0.853	NON_SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19503685	3L_19503685_SNP [dm3] 3L_19510585_SNP [dm6]	A	T	6.345e^-5	0.853	INTERGENIC
3R	19464653	3R_19464653_SNP [dm3] 3R_23638931_SNP [dm6]	A	C	6.422e^-5	0.853	INTRON CG31145
X	9343651	X_9343651_SNP [dm3] X_9449618_SNP [dm6]	G	A	6.426e^-5	0.853	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20494801	3L_20494801_SNP [dm3] 3L_20501701_SNP [dm6]	T	C	6.485e^-5	0.853	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3R	11195001	3R_11195001_SNP [dm3] 3R_15369279_SNP [dm6]	G	A	6.534e^-5	0.853	SYNONYMOUS_CODING CG14868 DOWNSTREAM CG6136	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15670046	3L_15670046_SNP [dm3] 3L_15676946_SNP [dm6]	T	G	6.535e^-5	0.853	INTERGENIC
3R	26482461	3R_26482461_SNP [dm3] 3R_30656739_SNP [dm6]	T	C	6.603e^-5	0.853	INTERGENIC
2L	621012	2L_621012_SNP [dm3] 2L_621012_SNP [dm6]	A	G	6.668e^-5	0.853	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16757103	3R_16757103_SNP [dm3] 3R_20931381_SNP [dm6]	A	T	6.749e^-5	0.853	INTRON CG31191
3R	26478212	3R_26478212_SNP [dm3] 3R_30652490_SNP [dm6]	C	T	6.772e^-5	0.853	INTERGENIC
2R	12601944	2R_12601944_SNP [dm3] 2R_16714439_SNP [dm6]	G	A	6.774e^-5	0.853	INTRON CG30463
2L	5504311	2L_5504311_SNP [dm3] 2L_5504311_SNP [dm6]	T	A	6.811e^-5	0.853	INTERGENIC
2R	10020800	2R_10020800_SNP [dm3] 2R_14133295_SNP [dm6]	A	G	6.837e^-5	0.853	INTRON Prosap
2R	14820672	2R_14820672_SNP [dm3] 2R_18933167_SNP [dm6]	A	C	6.880e^-5	0.853	INTRON sano
3R	16811214	3R_16811214_SNP [dm3] 3R_20985492_SNP [dm6]	A	T	6.894e^-5	0.853	UPSTREAM Calx INTRON Calx
3L	17413742	3L_17413742_SNP [dm3] 3L_17420642_SNP [dm6]	A	C	6.897e^-5	0.853	INTRON blot
3L	14324815	3L_14324815_SNP [dm3] 3L_14331715_SNP [dm6]	A	G	7.015e^-5	0.853	INTRON fz
3L	6809455	3L_6809455_SNP [dm3] 3L_6816355_SNP [dm6]	A	G	7.049e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11005230	2R_11005230_SNP [dm3] 2R_15117725_SNP [dm6]	G	T	7.084e^-5	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
3R	19607507	3R_19607507_SNP [dm3] 3R_23781785_SNP [dm6]	T	C	7.093e^-5	0.853	UTR_5_PRIME mbc UPSTREAM Nup98-96	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	7581426	X_7581426_SNP [dm3] X_7687393_SNP [dm6]	G	C	7.155e^-5	0.853	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo
3L	9398929	3L_9398929_SNP [dm3] 3L_9405829_SNP [dm6]	C	T	7.192e^-5	0.853	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
3L	15734427	3L_15734427_SNP [dm3] 3L_15741327_SNP [dm6]	G	C	7.198e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23139280	3R_23139280_SNP [dm3] 3R_27313558_SNP [dm6]	G	C	7.228e^-5	0.853	INTRON CG3339	TF binding site BDTNP1_TFBS_twi
2R	10030880	2R_10030880_SNP [dm3] 2R_14143375_SNP [dm6]	A	T	7.384e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13945125	2R_13945125_SNP [dm3] 2R_18057620_SNP [dm6]	T	C	7.457e^-5	0.853	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC
3L	839225	3L_839225_SNP [dm3] 3L_839225_SNP [dm6]	C	T	7.459e^-5	0.853	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
2L	19774235	2L_19774235_SNP [dm3] 2L_19774235_SNP [dm6]	A	G	7.551e^-5	0.853	DOWNSTREAM CdGAPr INTERGENIC
3R	10411627	3R_10411627_SNP [dm3] 3R_14585905_SNP [dm6]	G	T	7.648e^-5	0.853	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7450420	3L_7450420_SNP [dm3] 3L_7457320_SNP [dm6]	T	C	7.664e^-5	0.853	SYNONYMOUS_CODING ppk26
2L	4859068	2L_4859068_DEL [dm3] 2L_4859068_DEL [dm6]	CT	A	7.693e^-5	0.853	INTRON pog
3R	16428729	3R_16428729_INS [dm3] 3R_20603007_INS [dm6]	G	GGAGGGCCGTG...	7.746e^-5	0.853	INTRON bon
2R	8617661	2R_8617661_SNP [dm3] 2R_12730156_SNP [dm6]	T	A	7.770e^-5	0.853	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
3L	443886	3L_443886_SNP [dm3] 3L_443886_SNP [dm6]	T	A	7.788e^-5	0.853	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	834230	3L_834230_SNP [dm3] 3L_834230_SNP [dm6]	A	G	7.815e^-5	0.853	SYNONYMOUS_CODING CG42553 UPSTREAM CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26611422	3R_26611422_SNP [dm3] 3R_30785700_SNP [dm6]	T	C	7.853e^-5	0.853	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4517563	3L_4517563_DEL [dm3] 3L_4517563_DEL [dm6]	AAAT	A	7.862e^-5	0.853	INTRON Tie
2L	19774226	2L_19774226_SNP [dm3] 2L_19774226_SNP [dm6]	A	G	7.969e^-5	0.853	DOWNSTREAM CdGAPr INTERGENIC
3R	23257966	3R_23257966_SNP [dm3] 3R_27432244_SNP [dm6]	C	G	7.990e^-5	0.853	INTRON side
3R	26086125	3R_26086125_SNP [dm3] 3R_30260403_SNP [dm6]	A	G	8.015e^-5	0.853	INTERGENIC
2L	11209612	2L_11209612_SNP [dm3] 2L_11209612_SNP [dm6]	G	C	8.143e^-5	0.853	INTERGENIC
X	9335979	X_9335979_SNP [dm3] X_9441946_SNP [dm6]	T	A	8.173e^-5	0.853	INTRON mgl
3L	3449752	3L_3449752_SNP [dm3] 3L_3449752_SNP [dm6]	C	T	8.232e^-5	0.853	INTRON eIF5B
2L	4204426	2L_4204426_SNP [dm3] 2L_4204426_SNP [dm6]	G	A	8.314e^-5	0.853	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	4233400	3L_4233400_SNP [dm3] 3L_4233400_SNP [dm6]	T	A	8.390e^-5	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17554500	2L_17554500_SNP [dm3] 2L_17554500_SNP [dm6]	T	C	8.420e^-5	0.853	NON_SYNONYMOUS_CODING CG7094
3L	10875054	3L_10875054_SNP [dm3] 3L_10881954_SNP [dm6]	C	T	8.427e^-5	0.853	UPSTREAM CG7949 INTRON CG6409
2L	15766511	2L_15766511_SNP [dm3] 2L_15766511_SNP [dm6]	T	A	8.438e^-5	0.853	UTR_3_PRIME wek DOWNSTREAM CG3793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni mE1_TFBS_HSA
3L	13893876	3L_13893876_SNP [dm3] 3L_13900776_SNP [dm6]	A	G	8.480e^-5	0.853	INTRON dysc
3L	15350420	3L_15350420_DEL [dm3] 3L_15357320_DEL [dm6]	TACAT	T	8.501e^-5	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1962450	2R_1962450_SNP [dm3] 2R_6074945_SNP [dm6]	C	T	8.523e^-5	0.853	NON_SYNONYMOUS_CODING CG7845
3R	13454918	3R_13454918_SNP [dm3] 3R_17629196_SNP [dm6]	C	T	8.579e^-5	0.853	UPSTREAM tRNA:V4:90C DOWNSTREAM CG14325 INTERGENIC
X	20555393	X_20555393_SNP [dm3] X_20684366_SNP [dm6]	A	T	8.583e^-5	0.853	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	5211833	3L_5211833_SNP [dm3] 3L_5218733_SNP [dm6]	A	G	8.655e^-5	0.853	INTRON shep
2R	14163919	2R_14163919_SNP [dm3] 2R_18276414_SNP [dm6]	C	T	8.684e^-5	0.853	SYNONYMOUS_CODING Ote	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9859747	3R_9859747_SNP [dm3] 3R_14034025_SNP [dm6]	C	T	8.698e^-5	0.853	SYNONYMOUS_CODING CG3061 DOWNSTREAM CG9922	TF binding site mE1_TFBS_sens
2L	7227380	2L_7227380_SNP [dm3] 2L_7227380_SNP [dm6]	T	C	8.803e^-5	0.853	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_inv
3L	19144007	3L_19144007_SNP [dm3] 3L_19150907_SNP [dm6]	C	G	8.865e^-5	0.853	INTRON fz2
3L	16759736	3L_16759736_SNP [dm3] 3L_16766636_SNP [dm6]	G	A	8.869e^-5	0.853	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22482765	3L_22482765_SNP [dm3] 3L_22489665_SNP [dm6]	A	G	8.916e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16597950	3R_16597950_SNP [dm3] 3R_20772228_SNP [dm6]	G	T	9.099e^-5	0.853	SYNONYMOUS_CODING Takl1 INTRON Syp
2L	7217931	2L_7217931_SNP [dm3] 2L_7217931_SNP [dm6]	C	A	9.116e^-5	0.853	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1872979	2L_1872979_SNP [dm3] 2L_1872979_SNP [dm6]	A	G	9.179e^-5	0.853	INTRON CG31663 EXON CR44075
2R	11091168	2R_11091168_SNP [dm3] 2R_15203663_SNP [dm6]	A	T	9.255e^-5	0.853	SYNONYMOUS_CODING CG11807 UPSTREAM Ir51a DOWNSTREAM CG42391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26138420	3R_26138420_SNP [dm3] 3R_30312698_SNP [dm6]	T	G	9.294e^-5	0.853	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	13232979	2L_13232979_DEL [dm3] 2L_13232979_DEL [dm6]	CTAATCTGT	AG	9.319e^-5	0.853	UTR_3_PRIME Prosalpha6T DOWNSTREAM CG15479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13232998	2L_13232998_SNP [dm3] 2L_13232998_SNP [dm6]	C	T	9.319e^-5	0.853	UTR_3_PRIME Prosalpha6T DOWNSTREAM CG15479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7317286	X_7317286_SNP [dm3] X_7423253_SNP [dm6]	C	A	9.368e^-5	0.853	INTERGENIC
3R	7645254	3R_7645254_SNP [dm3] 3R_11819532_SNP [dm6]	C	A	9.375e^-5	0.853	UPSTREAM CoVa & 1 other DOWNSTREAM CG6950 INTRON CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	7648561	3R_7648561_SNP [dm3] 3R_11822839_SNP [dm6]	G	A	9.376e^-5	0.853	UTR_3_PRIME CG6959 UPSTREAM CG6950
3L	11332983	3L_11332983_SNP [dm3] 3L_11339883_SNP [dm6]	G	A	9.413e^-5	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25074863	3R_25074863_SNP [dm3] 3R_29249141_SNP [dm6]	C	A	9.522e^-5	0.853	UPSTREAM SP1029 INTRON SP1029
3L	7457215	3L_7457215_SNP [dm3] 3L_7464115_SNP [dm6]	C	G	9.657e^-5	0.853	INTERGENIC
X	20017003	X_20017003_SNP [dm3] X_20122970_SNP [dm6]	G	A	9.659e^-5	0.853	UTR_3_PRIME CG34331 INTRON CG34331
X	7317284	X_7317284_SNP [dm3] X_7423251_SNP [dm6]	C	T	9.715e^-5	0.853	INTERGENIC
2R	12674081	2R_12674081_SNP [dm3] 2R_16786576_SNP [dm6]	T	C	9.742e^-5	0.853	UPSTREAM CG5522 INTRON CG5522	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15326233	2L_15326233_SNP [dm3] 2L_15326233_SNP [dm6]	G	A	9.754e^-5	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18753291	3R_18753291_SNP [dm3] 3R_22927569_SNP [dm6]	G	C	9.854e^-5	0.853	INTRON klg
3L	20677230	3L_20677230_SNP [dm3] 3L_20684130_SNP [dm6]	G	C	9.866e^-5	0.853	INTERGENIC
2R	7135506	2R_7135506_SNP [dm3] 2R_11248001_SNP [dm6]	G	A	9.888e^-5	0.853	UPSTREAM CG34227 INTERGENIC
3L	17311597	3L_17311597_DEL [dm3] 3L_17318497_DEL [dm6]	AA	A	9.897e^-5	0.853	INTERGENIC
X	8934208	X_8934208_SNP [dm3] X_9040175_SNP [dm6]	A	G	9.902e^-5	0.853	SYNONYMOUS_CODING CG42388 UTR_5_PRIME CG42388 INTRON CR43836 & 1 other
3L	12776112	3L_12776112_SNP [dm3] 3L_12783012_SNP [dm6]	C	T	9.937e^-5	0.853	SYNONYMOUS_CODING CG17666 UPSTREAM CG17666	TF binding site mE1_TFBS_sens
2L	7838894	2L_7838894_SNP [dm3] 2L_7838894_SNP [dm6]	C	T	9.942e^-5	0.853	DOWNSTREAM CR43100 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11003667	2R_11003667_SNP [dm3] 2R_15116162_SNP [dm6]	C	T	1.005e^-4	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11102311	2R_11102311_SNP [dm3] 2R_15214806_SNP [dm6]	A	G	1.016e^-4	0.853	SYNONYMOUS_CODING CG8093	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10171167	2R_10171167_SNP [dm3] 2R_14283662_SNP [dm6]	T	G	1.019e^-4	0.853	INTRON Ih
3L	14676379	3L_14676379_SNP [dm3] 3L_14683279_SNP [dm6]	T	C	1.023e^-4	0.853	INTRON ome
2L	7627050	2L_7627050_SNP [dm3] 2L_7627050_SNP [dm6]	G	A	1.026e^-4	0.853	INTERGENIC
3R	25449690	3R_25449690_SNP [dm3] 3R_29623968_SNP [dm6]	C	A	1.026e^-4	0.853	INTERGENIC
X	7450403	X_7450403_SNP [dm3] X_7556370_SNP [dm6]	A	T	1.031e^-4	0.853	EXON CR44501	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2R	14411563	2R_14411563_SNP [dm3] 2R_18524058_SNP [dm6]	T	G	1.032e^-4	0.853	INTRON CG43066
2R	10030887	2R_10030887_SNP [dm3] 2R_14143382_SNP [dm6]	T	G	1.040e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	19252276	3L_19252276_SNP [dm3] 3L_19259176_SNP [dm6]	T	C	1.041e^-4	0.853	NON_SYNONYMOUS_CODING nes UPSTREAM CR45210
3L	17012948	3L_17012948_SNP [dm3] 3L_17019848_SNP [dm6]	T	C	1.043e^-4	0.853	SYNONYMOUS_CODING CG7728 DOWNSTREAM CG6652	TF binding site mE1_TFBS_cad
3L	5314541	3L_5314541_DEL [dm3] 3L_5321441_DEL [dm6]	AC	A	1.045e^-4	0.853	INTERGENIC
2R	5293203	2R_5293203_DEL [dm3] 2R_9405698_DEL [dm6]	AA	A	1.054e^-4	0.853	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18483184	2R_18483184_SNP [dm3] 2R_22595679_SNP [dm6]	A	G	1.056e^-4	0.853	NON_SYNONYMOUS_CODING CG3927 DOWNSTREAM CR45328	TF binding site mE1_TFBS_inv
2L	18898283	2L_18898283_SNP [dm3] 2L_18898283_SNP [dm6]	T	A	1.066e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13198539	X_13198539_SNP [dm3] X_13304506_SNP [dm6]	C	T	1.068e^-4	0.853	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9125619	2L_9125619_SNP [dm3] 2L_9125619_SNP [dm6]	T	C	1.069e^-4	0.853	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15074031	3R_15074031_SNP [dm3] 3R_19248309_SNP [dm6]	A	G	1.075e^-4	0.853	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
X	13197984	X_13197984_SNP [dm3] X_13303951_SNP [dm6]	T	A	1.081e^-4	0.853	UPSTREAM CR45018 INTRON IP3K2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15638871	3R_15638871_SNP [dm3] 3R_19813149_SNP [dm6]	T	C	1.099e^-4	0.853	INTRON bnl
3L	4512128	3L_4512128_SNP [dm3] 3L_4512128_SNP [dm6]	T	A	1.101e^-4	0.853	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7317271	X_7317271_SNP [dm3] X_7423238_SNP [dm6]	T	A	1.103e^-4	0.853	INTERGENIC
X	18409042	X_18409042_DEL [dm3] X_18515009_DEL [dm6]	TTG	T	1.107e^-4	0.853	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	18283742	2L_18283742_SNP [dm3] 2L_18283742_SNP [dm6]	C	G	1.113e^-4	0.853	INTERGENIC
3R	18891384	3R_18891384_SNP [dm3] 3R_23065662_SNP [dm6]	C	T	1.121e^-4	0.853	SYNONYMOUS_CODING CG17111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3986366	3L_3986366_SNP [dm3] 3L_3986366_SNP [dm6]	C	G	1.127e^-4	0.853	INTRON scrt
2R	10026662	2R_10026662_SNP [dm3] 2R_14139157_SNP [dm6]	C	T	1.137e^-4	0.853	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10653267	3R_10653267_SNP [dm3] 3R_14827545_SNP [dm6]	A	T	1.141e^-4	0.853	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17643537	X_17643537_SNP [dm3] X_17749504_SNP [dm6]	T	C	1.142e^-4	0.853	SYNONYMOUS_CODING CG42684	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10025638	2R_10025638_SNP [dm3] 2R_14138133_SNP [dm6]	A	G	1.148e^-4	0.853	INTRON Prosap
3L	14797409	3L_14797409_SNP [dm3] 3L_14804309_SNP [dm6]	C	A	1.151e^-4	0.853	UPSTREAM gnu & 1 other INTERGENIC
2L	1855776	2L_1855776_SNP [dm3] 2L_1855776_SNP [dm6]	A	C	1.152e^-4	0.853	SYNONYMOUS_CODING wry
3R	22534592	3R_22534592_SNP [dm3] 3R_26708870_SNP [dm6]	G	A	1.157e^-4	0.853	INTRON amon
2L	8846066	2L_8846066_SNP [dm3] 2L_8846066_SNP [dm6]	C	G	1.158e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27083758	3R_27083758_SNP [dm3] 3R_31258036_SNP [dm6]	G	T	1.159e^-4	0.853	INTRON CG3669
3R	22615448	3R_22615448_SNP [dm3] 3R_26789726_SNP [dm6]	G	A	1.163e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	10335929	3L_10335929_SNP [dm3] 3L_10342829_SNP [dm6]	G	A	1.166e^-4	0.853	INTERGENIC
2L	19822920	2L_19822920_SNP [dm3] 2L_19822920_SNP [dm6]	G	T	1.177e^-4	0.853	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12811322	3L_12811322_SNP [dm3] 3L_12818222_SNP [dm6]	C	A	1.185e^-4	0.853	NON_SYNONYMOUS_CODING CG42588
3R	27460414	3R_27460414_SNP [dm3] 3R_31634692_SNP [dm6]	C	T	1.185e^-4	0.853	INTRON kek6
3L	20555218	3L_20555218_SNP [dm3] 3L_20562118_SNP [dm6]	T	C	1.188e^-4	0.853	INTERGENIC
2L	6703433	2L_6703433_SNP [dm3] 2L_6703433_SNP [dm6]	T	G	1.189e^-4	0.853	INTRON Tsp
X	22262113	X_22262113_SNP [dm3] X_22860277_SNP [dm6]	C	G	1.197e^-4	0.853	INTRON CG42346	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7317334	X_7317334_INS [dm3] X_7423301_INS [dm6]	T	TTTATGTT	1.203e^-4	0.853	INTERGENIC
2R	11887658	2R_11887658_SNP [dm3] 2R_16000153_SNP [dm6]	A	G	1.212e^-4	0.853	UTR_5_PRIME ATPCL INTRON ATPCL	TF binding site BDTNP1_TFBS_z
2L	8847807	2L_8847807_SNP [dm3] 2L_8847807_SNP [dm6]	T	A	1.213e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6809439	3L_6809439_SNP [dm3] 3L_6816339_SNP [dm6]	G	A	1.216e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11102365	2R_11102365_SNP [dm3] 2R_15214860_SNP [dm6]	G	C	1.221e^-4	0.853	SYNONYMOUS_CODING CG8093	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21903057	X_21903057_SNP [dm3] X_22501221_SNP [dm6]	G	A	1.224e^-4	0.853	SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
2L	9578093	2L_9578093_SNP [dm3] 2L_9578093_SNP [dm6]	C	A	1.224e^-4	0.853	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs
2R	11878095	2R_11878095_SNP [dm3] 2R_15990590_SNP [dm6]	G	T	1.225e^-4	0.853	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6460133	2R_6460133_SNP [dm3] 2R_10572628_SNP [dm6]	A	T	1.225e^-4	0.853	INTRON psq
3L	839203	3L_839203_DEL [dm3] 3L_839203_DEL [dm6]	ACGAACAAAAA...	A	1.226e^-4	0.853	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
2R	11878777	2R_11878777_SNP [dm3] 2R_15991272_SNP [dm6]	C	G	1.227e^-4	0.853	START_GAINED CG8314 UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	18409039	X_18409039_SNP [dm3] X_18515006_SNP [dm6]	G	C	1.232e^-4	0.853	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	15868926	3R_15868926_SNP [dm3] 3R_20043204_SNP [dm6]	T	G	1.236e^-4	0.853	SYNONYMOUS_CODING Indy-2 UTR_5_PRIME CG33934 INTRON CG17193
3R	24858043	3R_24858043_SNP [dm3] 3R_29032321_SNP [dm6]	C	A	1.240e^-4	0.853	NON_SYNONYMOUS_CODING Ssl2 DOWNSTREAM beta4GalNAcTB EXON CR45044
3L	4512125	3L_4512125_SNP [dm3] 3L_4512125_SNP [dm6]	G	A	1.241e^-4	0.853	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15127890	2R_15127890_SNP [dm3] 2R_19240385_SNP [dm6]	C	G	1.244e^-4	0.853	NON_SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9553980	3L_9553980_SNP [dm3] 3L_9560880_SNP [dm6]	G	T	1.245e^-4	0.853	INTRON CG42673
3R	14085525	3R_14085525_SNP [dm3] 3R_18259803_SNP [dm6]	C	T	1.247e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9945960	2L_9945960_INS [dm3] 2L_9945960_INS [dm6]	A	AA	1.248e^-4	0.853	INTRON CG5853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18456389	3R_18456389_DEL [dm3] 3R_22630667_DEL [dm6]	AA	A	1.249e^-4	0.853	INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	12183256	X_12183256_SNP [dm3] X_12289223_SNP [dm6]	G	A	1.252e^-4	0.853	INTRON Ten-a
3L	4233353	3L_4233353_SNP [dm3] 3L_4233353_SNP [dm6]	A	C	1.274e^-4	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26138439	3R_26138439_SNP [dm3] 3R_30312717_SNP [dm6]	G	A	1.275e^-4	0.853	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	3934859	X_3934859_SNP [dm3] X_4040826_SNP [dm6]	G	C	1.281e^-4	0.853	INTERGENIC
2L	14483475	2L_14483475_SNP [dm3] 2L_14483475_SNP [dm6]	G	A	1.283e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25439544	3R_25439544_SNP [dm3] 3R_29613822_SNP [dm6]	A	G	1.283e^-4	0.853	INTRON alph
2L	14111480	2L_14111480_SNP [dm3] 2L_14111480_SNP [dm6]	T	C	1.291e^-4	0.853	UPSTREAM CG31769 INTERGENIC
3R	17044296	3R_17044296_SNP [dm3] 3R_21218574_SNP [dm6]	C	T	1.293e^-4	0.853	SYNONYMOUS_CODING CG3353 UPSTREAM Oga	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	20513277	3L_20513277_SNP [dm3] 3L_20520177_SNP [dm6]	C	T	1.294e^-4	0.853	SYNONYMOUS_CODING mTerf3 UPSTREAM CG5059 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18864951	3R_18864951_SNP [dm3] 3R_23039229_SNP [dm6]	G	A	1.295e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	21905879	X_21905879_SNP [dm3] X_22504043_SNP [dm6]	T	C	1.302e^-4	0.853	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
X	5725736	X_5725736_SNP [dm3] X_5831703_SNP [dm6]	G	A	1.307e^-4	0.853	UPSTREAM tRNA:CR32761:Psi DOWNSTREAM CR43264 INTRON CG15765
X	13083755	X_13083755_SNP [dm3] X_13189722_SNP [dm6]	C	A	1.308e^-4	0.853	UTR_3_PRIME CG12723 UPSTREAM CG34411
3R	26810930	3R_26810930_SNP [dm3] 3R_30985208_SNP [dm6]	C	T	1.308e^-4	0.853	INTRON 5-HT7
2L	10091087	2L_10091087_SNP [dm3] 2L_10091087_SNP [dm6]	G	T	1.311e^-4	0.853	DOWNSTREAM CG13133 INTRON CG44153
2L	12210722	2L_12210722_SNP [dm3] 2L_12210722_SNP [dm6]	C	G	1.317e^-4	0.853	DOWNSTREAM CG31759 INTRON aret
X	19774055	X_19774055_INS [dm3] X_19880022_INS [dm6]	G	GG	1.317e^-4	0.853	INTRON Hers
2L	20482006	2L_20482006_DEL [dm3] 2L_20482006_DEL [dm6]	AA	A	1.319e^-4	0.853	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11909012	3L_11909012_SNP [dm3] 3L_11915912_SNP [dm6]	T	A	1.321e^-4	0.853	INTRON CG44837
3R	11347732	3R_11347732_SNP [dm3] 3R_15522010_SNP [dm6]	G	A	1.327e^-4	0.853	INTERGENIC
X	10222429	X_10222429_SNP [dm3] X_10328396_SNP [dm6]	A	C	1.330e^-4	0.853	DOWNSTREAM Gip INTRON CG2909
3R	7540189	3R_7540189_SNP [dm3] 3R_11714467_SNP [dm6]	A	T	1.340e^-4	0.853	INTERGENIC
2R	10020345	2R_10020345_SNP [dm3] 2R_14132840_SNP [dm6]	C	T	1.348e^-4	0.853	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	4510259	3L_4510259_SNP [dm3] 3L_4510259_SNP [dm6]	T	C	1.358e^-4	0.853	DOWNSTREAM Tie INTERGENIC
2L	11209388	2L_11209388_SNP [dm3] 2L_11209388_SNP [dm6]	G	A	1.362e^-4	0.853	INTERGENIC	silencer mE1_HDAC_PRE
2R	15125830	2R_15125830_SNP [dm3] 2R_19238325_SNP [dm6]	C	T	1.369e^-4	0.853	INTRON cora
X	21900812	X_21900812_SNP [dm3] X_22498976_SNP [dm6]	T	C	1.374e^-4	0.853	UTR_3_PRIME l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_dl
3R	10271645	3R_10271645_SNP [dm3] 3R_14445923_SNP [dm6]	T	A	1.375e^-4	0.853	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12183259	X_12183259_INS [dm3] X_12289226_INS [dm6]	A	AAACA	1.378e^-4	0.853	INTRON Ten-a
X	7317305	X_7317305_SNP [dm3] X_7423272_SNP [dm6]	A	G	1.381e^-4	0.853	INTERGENIC
X	4417113	X_4417113_SNP [dm3] X_4523080_SNP [dm6]	G	A	1.381e^-4	0.853	INTRON CR32773
3R	23258397	3R_23258397_SNP [dm3] 3R_27432675_SNP [dm6]	C	T	1.383e^-4	0.853	INTRON side
2L	13962412	2L_13962412_SNP [dm3] 2L_13962412_SNP [dm6]	G	T	1.386e^-4	0.853	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
2R	6932630	2R_6932630_SNP [dm3] 2R_11045125_SNP [dm6]	A	G	1.390e^-4	0.853	INTRON luna
3L	15750110	3L_15750110_SNP [dm3] 3L_15757010_SNP [dm6]	T	C	1.402e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5312769	3L_5312769_SNP [dm3] 3L_5319669_SNP [dm6]	A	T	1.406e^-4	0.853	INTERGENIC
3R	27331249	3R_27331249_SNP [dm3] 3R_31505527_SNP [dm6]	A	T	1.416e^-4	0.853	INTRON mey	TF binding site BDTNP1_TFBS_prd
2L	8719284	2L_8719284_SNP [dm3] 2L_8719284_SNP [dm6]	C	T	1.419e^-4	0.853	INTRON raw
3L	12811258	3L_12811258_SNP [dm3] 3L_12818158_SNP [dm6]	C	G	1.423e^-4	0.853	NON_SYNONYMOUS_CODING CG42588
3L	17018354	3L_17018354_SNP [dm3] 3L_17025254_SNP [dm6]	C	T	1.431e^-4	0.853	SYNONYMOUS_CODING Fit2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14244834	2L_14244834_SNP [dm3] 2L_14244834_SNP [dm6]	C	A	1.438e^-4	0.853	INTERGENIC
2R	7618976	2R_7618976_SNP [dm3] 2R_11731471_SNP [dm6]	G	A	1.445e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23269104	3R_23269104_SNP [dm3] 3R_27443382_SNP [dm6]	T	A	1.453e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11623441	2R_11623441_SNP [dm3] 2R_15735936_SNP [dm6]	T	C	1.457e^-4	0.853	SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26811798	3R_26811798_SNP [dm3] 3R_30986076_SNP [dm6]	T	A	1.461e^-4	0.853	INTRON 5-HT7
3R	15970826	3R_15970826_SNP [dm3] 3R_20145104_SNP [dm6]	C	T	1.464e^-4	0.853	INTERGENIC
3R	10411612	3R_10411612_DEL [dm3] 3R_14585890_DEL [dm6]	GA	C	1.465e^-4	0.853	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	20958750	X_20958750_SNP [dm3] X_21087723_SNP [dm6]	A	T	1.465e^-4	0.853	INTERGENIC
3R	26479741	3R_26479741_SNP [dm3] 3R_30654019_SNP [dm6]	C	G	1.485e^-4	0.853	INTERGENIC
3R	21787542	3R_21787542_SNP [dm3] 3R_25961820_SNP [dm6]	C	A	1.486e^-4	0.853	UPSTREAM boss DOWNSTREAM CG14540 INTERGENIC
3R	7540175	3R_7540175_SNP [dm3] 3R_11714453_SNP [dm6]	G	C	1.494e^-4	0.853	INTERGENIC
3L	700533	3L_700533_SNP [dm3] 3L_700533_SNP [dm6]	C	G	1.500e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
3L	12812948	3L_12812948_SNP [dm3] 3L_12819848_SNP [dm6]	G	A	1.501e^-4	0.853	SYNONYMOUS_CODING CG42588
X	13723107	X_13723107_SNP [dm3] X_13829074_SNP [dm6]	A	G	1.504e^-4	0.853	SYNONYMOUS_CODING jub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19902086	3R_19902086_SNP [dm3] 3R_24076364_SNP [dm6]	C	T	1.508e^-4	0.853	INTRON 4EHP
3R	18363519	3R_18363519_SNP [dm3] 3R_22537797_SNP [dm6]	A	C	1.509e^-4	0.853	INTRON CG5326
3R	27129571	3R_27129571_SNP [dm3] 3R_31303849_SNP [dm6]	T	C	1.513e^-4	0.853	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2L	18282239	2L_18282239_SNP [dm3] 2L_18282239_SNP [dm6]	C	G	1.514e^-4	0.853	INTERGENIC
X	7316903	X_7316903_SNP [dm3] X_7422870_SNP [dm6]	C	G	1.517e^-4	0.853	DOWNSTREAM CG9657 INTERGENIC
3R	26138443	3R_26138443_DEL [dm3] 3R_30312721_DEL [dm6]	CC	C	1.523e^-4	0.853	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	20672323	3L_20672323_SNP [dm3] 3L_20679223_SNP [dm6]	C	T	1.531e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13723150	X_13723150_SNP [dm3] X_13829117_SNP [dm6]	A	G	1.538e^-4	0.853	SYNONYMOUS_CODING jub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20200472	3R_20200472_SNP [dm3] 3R_24374750_SNP [dm6]	C	G	1.539e^-4	0.853	NON_SYNONYMOUS_CODING CG17781
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	1.542e^-4	0.853	UTR_3_PRIME Ndae1 INTRON Ndae1
3L	2156343	3L_2156343_INS [dm3] 3L_2156343_INS [dm6]	T	TAGCGTAT	1.544e^-4	0.853	INTRON CG15822
3L	4510272	3L_4510272_SNP [dm3] 3L_4510272_SNP [dm6]	A	G	1.544e^-4	0.853	DOWNSTREAM Tie INTERGENIC
2R	15056913	2R_15056913_SNP [dm3] 2R_19169408_SNP [dm6]	T	C	1.544e^-4	0.853	UPSTREAM CG10737 INTRON CG10737
3R	23258434	3R_23258434_SNP [dm3] 3R_27432712_SNP [dm6]	G	C	1.545e^-4	0.853	INTRON side
3R	9870791	3R_9870791_INS [dm3] 3R_14045069_INS [dm6]	T	CACTCA	1.554e^-4	0.853	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	21851001	3R_21851001_SNP [dm3] 3R_26025279_SNP [dm6]	G	A	1.570e^-4	0.853	UPSTREAM E_spl_m4-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10853110	3L_10853110_SNP [dm3] 3L_10860010_SNP [dm6]	C	T	1.581e^-4	0.853	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20513550	3L_20513550_SNP [dm3] 3L_20520450_SNP [dm6]	G	A	1.592e^-4	0.853	SYNONYMOUS_CODING mTerf3 UPSTREAM CG5104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	3447894	3L_3447894_SNP [dm3] 3L_3447894_SNP [dm6]	T	C	1.604e^-4	0.853	INTRON eIF5B
3R	26649938	3R_26649938_SNP [dm3] 3R_30824216_SNP [dm6]	G	T	1.604e^-4	0.853	INTRON cindr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	7200664	3L_7200664_SNP [dm3] 3L_7207564_SNP [dm6]	A	G	1.611e^-4	0.853	INTERGENIC
2L	17545112	2L_17545112_SNP [dm3] 2L_17545112_SNP [dm6]	C	T	1.617e^-4	0.853	INTERGENIC
X	18409038	X_18409038_SNP [dm3] X_18515005_SNP [dm6]	G	A	1.618e^-4	0.853	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	22558383	3R_22558383_SNP [dm3] 3R_26732661_SNP [dm6]	G	A	1.623e^-4	0.853	INTERGENIC
3L	352281	3L_352281_SNP [dm3] 3L_352281_SNP [dm6]	C	G	1.628e^-4	0.853	INTRON Ptpmeg
3R	27083817	3R_27083817_SNP [dm3] 3R_31258095_SNP [dm6]	C	T	1.635e^-4	0.853	INTRON CG3669
3R	24936843	3R_24936843_SNP [dm3] 3R_29111121_SNP [dm6]	T	C	1.644e^-4	0.853	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26086131	3R_26086131_SNP [dm3] 3R_30260409_SNP [dm6]	G	C	1.648e^-4	0.853	INTERGENIC
X	19200778	X_19200778_SNP [dm3] X_19306745_SNP [dm6]	G	T	1.660e^-4	0.853	INTRON CG8051
3R	16007765	3R_16007765_SNP [dm3] 3R_20182043_SNP [dm6]	C	A	1.669e^-4	0.853	INTERGENIC
3L	18384507	3L_18384507_DEL [dm3] 3L_18391407_DEL [dm6]	GC	G	1.669e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7052716	2R_7052716_SNP [dm3] 2R_11165211_SNP [dm6]	G	T	1.680e^-4	0.853	INTRON shn & 1 other
2R	1965762	2R_1965762_INS [dm3] 2R_6078257_INS [dm6]	T	TTGTCGATTATTATAAATAC...	1.682e^-4	0.853	DOWNSTREAM CG14590 & 1 other INTERGENIC
3L	839179	3L_839179_SNP [dm3] 3L_839179_SNP [dm6]	T	C	1.682e^-4	0.853	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
3R	14461885	3R_14461885_DEL [dm3] 3R_18636163_DEL [dm6]	TT	T	1.684e^-4	0.853	INTRON qin & 1 other
3R	18739671	3R_18739671_SNP [dm3] 3R_22913949_SNP [dm6]	C	A	1.685e^-4	0.853	INTRON klg
3L	10516885	3L_10516885_SNP [dm3] 3L_10523785_SNP [dm6]	T	C	1.716e^-4	0.853	INTRON A2bp1
3L	12795272	3L_12795272_SNP [dm3] 3L_12802172_SNP [dm6]	G	A	1.717e^-4	0.853	INTRON Atg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13198726	X_13198726_SNP [dm3] X_13304693_SNP [dm6]	T	A	1.719e^-4	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17013933	3L_17013933_SNP [dm3] 3L_17020833_SNP [dm6]	A	C	1.719e^-4	0.853	DOWNSTREAM CG7728 INTRON CG6652	TF binding site mE1_TFBS_cad
X	19243956	X_19243956_SNP [dm3] X_19349923_SNP [dm6]	T	C	1.724e^-4	0.853	INTERGENIC
3L	10635446	3L_10635446_SNP [dm3] 3L_10642346_SNP [dm6]	C	T	1.726e^-4	0.853	SYNONYMOUS_CODING CG14154 INTRON CG32066
3R	11599770	3R_11599770_SNP [dm3] 3R_15774048_SNP [dm6]	T	G	1.733e^-4	0.853	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
X	16010215	X_16010215_SNP [dm3] X_16116182_SNP [dm6]	C	G	1.742e^-4	0.853	INTERGENIC
2L	4740294	2L_4740294_SNP [dm3] 2L_4740294_SNP [dm6]	A	T	1.745e^-4	0.853	INTRON CG15630	TF binding site mE1_TFBS_sbb
3L	18384522	3L_18384522_SNP [dm3] 3L_18391422_SNP [dm6]	A	C	1.747e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14797387	3L_14797387_SNP [dm3] 3L_14804287_SNP [dm6]	A	G	1.751e^-4	0.853	UPSTREAM gnu & 1 other INTERGENIC
2R	11005247	2R_11005247_SNP [dm3] 2R_15117742_SNP [dm6]	G	T	1.755e^-4	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
2R	16964592	2R_16964592_DEL [dm3] 2R_21077087_DEL [dm6]	AA	A	1.757e^-4	0.853	UTR_5_PRIME Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7683099	3R_7683099_SNP [dm3] 3R_11857377_SNP [dm6]	C	A	1.763e^-4	0.853	INTRON CG6959
3L	2893528	3L_2893528_SNP [dm3] 3L_2893528_SNP [dm6]	A	C	1.764e^-4	0.853	INTERGENIC
3R	21904994	3R_21904994_SNP [dm3] 3R_26079272_SNP [dm6]	C	A	1.765e^-4	0.853	INTRON dys
3R	19041317	3R_19041317_INS [dm3] 3R_23215595_INS [dm6]	A	ACA	1.775e^-4	0.853	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9034473	3R_9034473_SNP [dm3] 3R_13208751_SNP [dm6]	A	T	1.788e^-4	0.853	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3449825	3L_3449825_SNP [dm3] 3L_3449825_SNP [dm6]	G	C	1.797e^-4	0.853	INTRON eIF5B
2R	14820682	2R_14820682_SNP [dm3] 2R_18933177_SNP [dm6]	A	G	1.800e^-4	0.853	INTRON sano
2L	4206417	2L_4206417_SNP [dm3] 2L_4206417_SNP [dm6]	T	C	1.803e^-4	0.853	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11087359	X_11087359_SNP [dm3] X_11193326_SNP [dm6]	G	C	1.805e^-4	0.853	EXON CR44765
2L	8770534	2L_8770534_SNP [dm3] 2L_8770534_SNP [dm6]	T	A	1.807e^-4	0.853	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2R	7618937	2R_7618937_SNP [dm3] 2R_11731432_SNP [dm6]	G	C	1.808e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9001794	3L_9001794_SNP [dm3] 3L_9008694_SNP [dm6]	T	A	1.815e^-4	0.853	UTR_3_PRIME CG5194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9910090	X_9910090_SNP [dm3] X_10016057_SNP [dm6]	T	A	1.821e^-4	0.853	UPSTREAM Cht6 INTERGENIC
3R	12995517	3R_12995517_SNP [dm3] 3R_17169795_SNP [dm6]	G	A	1.821e^-4	0.853	INTRON Mur89F
X	12499840	X_12499840_SNP [dm3] X_12605807_SNP [dm6]	A	C	1.824e^-4	0.853	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3L	18148798	3L_18148798_SNP [dm3] 3L_18155698_SNP [dm6]	C	T	1.828e^-4	0.853	NON_SYNONYMOUS_CODING CG13699
3L	1282360	3L_1282360_SNP [dm3] 3L_1282360_SNP [dm6]	T	G	1.830e^-4	0.853	INTRON CG32333
X	15172211	X_15172211_SNP [dm3] X_15278178_SNP [dm6]	T	G	1.831e^-4	0.853	INTERGENIC
3L	10875007	3L_10875007_SNP [dm3] 3L_10881907_SNP [dm6]	T	A	1.833e^-4	0.853	UPSTREAM CG7949 INTRON CG6409
3R	15074720	3R_15074720_SNP [dm3] 3R_19248998_SNP [dm6]	T	C	1.842e^-4	0.853	UPSTREAM CG5217 INTERGENIC
2R	13893339	2R_13893339_SNP [dm3] 2R_18005834_SNP [dm6]	G	C	1.847e^-4	0.853	INTRON dpr13 EXON CR44419
2R	12012631	2R_12012631_SNP [dm3] 2R_16125126_SNP [dm6]	G	T	1.847e^-4	0.853	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16254987	2R_16254987_SNP [dm3] 2R_20367482_SNP [dm6]	C	T	1.847e^-4	0.853	INTERGENIC
X	18409010	X_18409010_SNP [dm3] X_18514977_SNP [dm6]	A	C	1.853e^-4	0.853	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	21931395	3R_21931395_SNP [dm3] 3R_26105673_SNP [dm6]	C	A	1.854e^-4	0.853	INTERGENIC
2L	651875	2L_651875_SNP [dm3] 2L_651875_SNP [dm6]	T	G	1.856e^-4	0.853	INTRON ds
X	7317275	X_7317275_SNP [dm3] X_7423242_SNP [dm6]	A	T	1.856e^-4	0.853	INTERGENIC
2L	4282121	2L_4282121_SNP [dm3] 2L_4282121_SNP [dm6]	T	G	1.863e^-4	0.853	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	16970771	3L_16970771_SNP [dm3] 3L_16977671_SNP [dm6]	C	T	1.868e^-4	0.853	INTRON Exn	TF binding site mE1_TFBS_inv
3L	13251353	3L_13251353_INS [dm3] 3L_13258253_INS [dm6]	A	ATA	1.874e^-4	0.853	INTRON caps
3R	9645423	3R_9645423_SNP [dm3] 3R_13819701_SNP [dm6]	C	T	1.880e^-4	0.853	INTERGENIC
3R	26113403	3R_26113403_SNP [dm3] 3R_30287681_SNP [dm6]	G	A	1.881e^-4	0.853	INTRON hdc
3R	26647210	3R_26647210_SNP [dm3] 3R_30821488_SNP [dm6]	T	C	1.883e^-4	0.853	UPSTREAM cindr INTRON cindr	TF binding site BDTNP1_TFBS_z
2R	17329997	2R_17329997_SNP [dm3] 2R_21442492_SNP [dm6]	C	T	1.886e^-4	0.853	INTRON Sdc
2R	15061759	2R_15061759_SNP [dm3] 2R_19174254_SNP [dm6]	T	C	1.889e^-4	0.853	INTRON CG10737
3L	20689283	3L_20689283_SNP [dm3] 3L_20696183_SNP [dm6]	A	T	1.894e^-4	0.853	UPSTREAM kni INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr
3L	5312754	3L_5312754_SNP [dm3] 3L_5319654_SNP [dm6]	T	C	1.898e^-4	0.853	INTERGENIC
2R	10025658	2R_10025658_SNP [dm3] 2R_14138153_SNP [dm6]	G	C	1.903e^-4	0.853	INTRON Prosap
3R	13007969	3R_13007969_SNP [dm3] 3R_17182247_SNP [dm6]	T	A	1.903e^-4	0.853	INTRON Mur89F
3L	4512116	3L_4512116_SNP [dm3] 3L_4512116_SNP [dm6]	G	A	1.905e^-4	0.853	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22910884	3R_22910884_SNP [dm3] 3R_27085162_SNP [dm6]	C	T	1.905e^-4	0.853	INTRON Cpr97Ea
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	1.919e^-4	0.853	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20281790	3R_20281790_SNP [dm3] 3R_24456068_SNP [dm6]	A	G	1.923e^-4	0.853	INTRON nAChRalpha1
2L	1468879	2L_1468879_SNP [dm3] 2L_1468879_SNP [dm6]	A	C	1.927e^-4	0.853	INTERGENIC
X	11726842	X_11726842_SNP [dm3] X_11832809_SNP [dm6]	G	C	1.932e^-4	0.853	NON_SYNONYMOUS_CODING rudhira INTRON rudhira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17643541	X_17643541_SNP [dm3] X_17749508_SNP [dm6]	T	C	1.933e^-4	0.853	SYNONYMOUS_CODING CG42684	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26818378	3R_26818378_SNP [dm3] 3R_30992656_SNP [dm6]	G	A	1.934e^-4	0.853	UPSTREAM CG31007 INTRON 5-HT7
3L	4512248	3L_4512248_SNP [dm3] 3L_4512248_SNP [dm6]	C	T	1.938e^-4	0.853	SYNONYMOUS_CODING Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4417111	X_4417111_SNP [dm3] X_4523078_SNP [dm6]	T	C	1.939e^-4	0.853	INTRON CR32773
3L	5314562	3L_5314562_SNP [dm3] 3L_5321462_SNP [dm6]	G	A	1.950e^-4	0.853	INTERGENIC
3R	24857905	3R_24857905_SNP [dm3] 3R_29032183_SNP [dm6]	C	T	1.953e^-4	0.853	SYNONYMOUS_CODING Ssl2 DOWNSTREAM beta4GalNAcTB EXON CR45044
3R	23363413	3R_23363413_SNP [dm3] 3R_27537691_SNP [dm6]	G	T	1.955e^-4	0.853	UPSTREAM CR44288 EXON CR44289
3R	10260908	3R_10260908_SNP [dm3] 3R_14435186_SNP [dm6]	G	C	1.956e^-4	0.853	INTRON cv-c
2R	11005196	2R_11005196_SNP [dm3] 2R_15117691_SNP [dm6]	G	C	1.970e^-4	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	834070	3L_834070_SNP [dm3] 3L_834070_SNP [dm6]	T	C	1.976e^-4	0.853	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18043643	3R_18043643_SNP [dm3] 3R_22217921_SNP [dm6]	A	G	1.980e^-4	0.853	DOWNSTREAM Gld2 INTRON SKIP
3L	352226	3L_352226_SNP [dm3] 3L_352226_SNP [dm6]	A	T	1.986e^-4	0.853	INTRON Ptpmeg
2L	5879647	2L_5879647_SNP [dm3] 2L_5879647_SNP [dm6]	C	G	1.991e^-4	0.853	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9465854	X_9465854_DEL [dm3] X_9571821_DEL [dm6]	GTG	G	1.994e^-4	0.853	UTR_3_PRIME CG32699 UPSTREAM Cubn
2L	2389791	2L_2389791_INS [dm3] 2L_2389791_INS [dm6]	C	CG	1.995e^-4	0.853	UTR_3_PRIME CG43750 DOWNSTREAM CG43750
3R	15868996	3R_15868996_SNP [dm3] 3R_20043274_SNP [dm6]	A	G	1.995e^-4	0.853	INTRON CG17193 & 2 others
3L	3986422	3L_3986422_SNP [dm3] 3L_3986422_SNP [dm6]	A	T	1.997e^-4	0.853	INTRON scrt	TF binding site mE1_TFBS_cad
3R	15783471	3R_15783471_DEL [dm3] 3R_19957749_DEL [dm6]	ACGGTTCATCAGGACAA...	A	2.000e^-4	0.853	INTRON Hs6st
2R	7618987	2R_7618987_SNP [dm3] 2R_11731482_SNP [dm6]	T	C	2.004e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3367518	2L_3367518_SNP [dm3] 2L_3367518_SNP [dm6]	G	A	2.006e^-4	0.853	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
2R	1967730	2R_1967730_SNP [dm3] 2R_6080225_SNP [dm6]	A	G	2.014e^-4	0.853	DOWNSTREAM Ars2 INTRON CG14590	TF binding site mE1_TFBS_cad
2L	14637100	2L_14637100_SNP [dm3] 2L_14637100_SNP [dm6]	C	G	2.020e^-4	0.853	INTRON osp
2R	7619044	2R_7619044_SNP [dm3] 2R_11731539_SNP [dm6]	T	C	2.031e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26649219	3R_26649219_SNP [dm3] 3R_30823497_SNP [dm6]	T	G	2.032e^-4	0.853	UPSTREAM cindr INTRON cindr
X	13198731	X_13198731_SNP [dm3] X_13304698_SNP [dm6]	C	T	2.033e^-4	0.853	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22959133	3R_22959133_SNP [dm3] 3R_27133411_SNP [dm6]	C	T	2.038e^-4	0.853	INTRON CG6051
2R	10016218	2R_10016218_SNP [dm3] 2R_14128713_SNP [dm6]	T	A	2.041e^-4	0.853	INTRON Prosap
2R	8588724	2R_8588724_SNP [dm3] 2R_12701219_SNP [dm6]	A	C	2.050e^-4	0.853	DOWNSTREAM wuc INTERGENIC
3R	27330930	3R_27330930_SNP [dm3] 3R_31505208_SNP [dm6]	G	A	2.052e^-4	0.853	INTRON mey	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16971001	3L_16971001_SNP [dm3] 3L_16977901_SNP [dm6]	G	T	2.055e^-4	0.853	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7989704	3L_7989704_DEL [dm3] 3L_7996604_DEL [dm6]	CAT	C	2.058e^-4	0.853	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	19464656	3R_19464656_SNP [dm3] 3R_23638934_SNP [dm6]	G	A	2.060e^-4	0.853	INTRON CG31145
2L	10694367	2L_10694367_SNP [dm3] 2L_10694367_SNP [dm6]	C	A	2.079e^-4	0.853	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
X	13627906	X_13627906_DEL [dm3] X_13733873_DEL [dm6]	TTT	T	2.105e^-4	0.853	INTRON g	TF binding site mE1_TFBS_sens
2L	4371521	2L_4371521_SNP [dm3] 2L_4371521_SNP [dm6]	G	C	2.106e^-4	0.853	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	4194404	2L_4194404_SNP [dm3] 2L_4194404_SNP [dm6]	C	A	2.110e^-4	0.853	INTRON CG3714
2R	18429464	2R_18429464_SNP [dm3] 2R_22541959_SNP [dm6]	C	A	2.125e^-4	0.853	INTRON px	TF binding site mE1_TFBS_cad
3R	11532885	3R_11532885_SNP [dm3] 3R_15707163_SNP [dm6]	T	G	2.134e^-4	0.853	SYNONYMOUS_CODING CG5404
2L	8719386	2L_8719386_SNP [dm3] 2L_8719386_SNP [dm6]	C	T	2.137e^-4	0.853	INTRON raw
X	12237191	X_12237191_SNP [dm3] X_12343158_SNP [dm6]	G	A	2.144e^-4	0.853	INTERGENIC
2L	11208922	2L_11208922_SNP [dm3] 2L_11208922_SNP [dm6]	G	T	2.149e^-4	0.853	INTERGENIC
3L	18121992	3L_18121992_SNP [dm3] 3L_18128892_SNP [dm6]	C	T	2.152e^-4	0.853	DOWNSTREAM Cyp312a1 INTERGENIC
2L	13998382	2L_13998382_SNP [dm3] 2L_13998382_SNP [dm6]	A	T	2.161e^-4	0.853	INTRON rk
3R	27331262	3R_27331262_INS [dm3] 3R_31505540_INS [dm6]	A	AGACCAATACCACTGTCA...	2.166e^-4	0.853	INTRON mey	TF binding site BDTNP1_TFBS_prd
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	2.168e^-4	0.853	SPLICE_SITE_REGION CG30471 INTRON CG30471
3L	5211838	3L_5211838_SNP [dm3] 3L_5218738_SNP [dm6]	T	G	2.177e^-4	0.853	INTRON shep
2L	12211550	2L_12211550_SNP [dm3] 2L_12211550_SNP [dm6]	C	G	2.189e^-4	0.853	INTRON aret
3R	6580931	3R_6580931_SNP [dm3] 3R_10755209_SNP [dm6]	A	T	2.190e^-4	0.853	SYNONYMOUS_CODING CG14691	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7227668	3L_7227668_SNP [dm3] 3L_7234568_SNP [dm6]	A	C	2.191e^-4	0.853	UTR_5_PRIME CG14826 UPSTREAM CG14826
3L	904627	3L_904627_SNP [dm3] 3L_904627_SNP [dm6]	C	A	2.195e^-4	0.853	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1907848	3L_1907848_SNP [dm3] 3L_1907848_SNP [dm6]	C	G	2.198e^-4	0.853	INTRON CG1887
3R	23125926	3R_23125926_SNP [dm3] 3R_27300204_SNP [dm6]	A	G	2.205e^-4	0.853	INTRON CG3339
3L	10875032	3L_10875032_SNP [dm3] 3L_10881932_SNP [dm6]	A	T	2.208e^-4	0.853	UPSTREAM CG7949 INTRON CG6409
3L	22626199	3L_22626199_SNP [dm3] 3L_22633099_SNP [dm6]	T	C	2.214e^-4	0.853	INTRON CG14459
3L	12923420	3L_12923420_DEL [dm3] 3L_12930320_DEL [dm6]	GG	T	2.229e^-4	0.853	INTERGENIC
3R	15815499	3R_15815499_SNP [dm3] 3R_19989777_SNP [dm6]	C	A	2.233e^-4	0.853	INTRON Hs6st
3R	9638615	3R_9638615_SNP [dm3] 3R_13812893_SNP [dm6]	C	T	2.234e^-4	0.853	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9638617	3R_9638617_SNP [dm3] 3R_13812895_SNP [dm6]	C	T	2.234e^-4	0.853	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11005377	2R_11005377_SNP [dm3] 2R_15117872_SNP [dm6]	T	G	2.239e^-4	0.853	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	10557482	3L_10557482_SNP [dm3] 3L_10564382_SNP [dm6]	A	T	2.242e^-4	0.853	INTRON A2bp1
3L	10827909	3L_10827909_SNP [dm3] 3L_10834809_SNP [dm6]	G	T	2.244e^-4	0.853	INTERGENIC
2L	12251393	2L_12251393_INS [dm3] 2L_12251393_INS [dm6]	C	CTGTT	2.247e^-4	0.853	INTRON aret
X	11320095	X_11320095_SNP [dm3] X_11426062_SNP [dm6]	C	T	2.249e^-4	0.853	INTRON Gs2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	4740185	2L_4740185_SNP [dm3] 2L_4740185_SNP [dm6]	A	G	2.260e^-4	0.853	INTRON CG15630	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3784040	3R_3784040_SNP [dm3] 3R_7958318_SNP [dm6]	G	A	2.263e^-4	0.853	INTRON dsx
2R	12663928	2R_12663928_SNP [dm3] 2R_16776423_SNP [dm6]	A	G	2.266e^-4	0.853	DOWNSTREAM Arp53D INTERGENIC
X	4198903	X_4198903_SNP [dm3] X_4304870_SNP [dm6]	T	C	2.272e^-4	0.853	INTERGENIC
2R	18429460	2R_18429460_SNP [dm3] 2R_22541955_SNP [dm6]	C	A	2.274e^-4	0.853	INTRON px	TF binding site mE1_TFBS_cad
3R	5206118	3R_5206118_SNP [dm3] 3R_9380396_SNP [dm6]	C	G	2.289e^-4	0.853	INTRON FER	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22218601	3R_22218601_SNP [dm3] 3R_26392879_SNP [dm6]	G	T	2.298e^-4	0.853	INTERGENIC
2R	15129248	2R_15129248_SNP [dm3] 2R_19241743_SNP [dm6]	T	C	2.302e^-4	0.853	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad
2R	9920808	2R_9920808_SNP [dm3] 2R_14033303_SNP [dm6]	T	G	2.318e^-4	0.853	INTRON mam
X	6856190	X_6856190_SNP [dm3] X_6962157_SNP [dm6]	C	A	2.320e^-4	0.853	INTRON CG14431 & 1 other
3R	22905080	3R_22905080_SNP [dm3] 3R_27079358_SNP [dm6]	G	C	2.324e^-4	0.853	SYNONYMOUS_CODING CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11102002	2R_11102002_SNP [dm3] 2R_15214497_SNP [dm6]	A	G	2.328e^-4	0.853	SYNONYMOUS_CODING CG8093 UPSTREAM row	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10020344	2R_10020344_SNP [dm3] 2R_14132839_SNP [dm6]	C	T	2.332e^-4	0.853	INTRON Prosap	TF binding site mE1_TFBS_inv
3R	17002050	3R_17002050_SNP [dm3] 3R_21176328_SNP [dm6]	C	T	2.340e^-4	0.853	INTRON SNF4Agamma
3R	9607120	3R_9607120_SNP [dm3] 3R_13781398_SNP [dm6]	A	T	2.342e^-4	0.853	UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10817800	2L_10817800_SNP [dm3] 2L_10817800_SNP [dm6]	G	C	2.347e^-4	0.853	INTRON Nos
2R	3051966	2R_3051966_SNP [dm3] 2R_7164461_SNP [dm6]	T	G	2.351e^-4	0.853	INTRON pk
2R	16168213	2R_16168213_SNP [dm3] 2R_20280708_SNP [dm6]	T	C	2.352e^-4	0.853	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	13012954	3R_13012954_SNP [dm3] 3R_17187232_SNP [dm6]	G	A	2.352e^-4	0.853	INTRON Mur89F
3L	2061461	3L_2061461_SNP [dm3] 3L_2061461_SNP [dm6]	A	G	2.352e^-4	0.853	SYNONYMOUS_CODING sls INTRON sls
3L	3914844	3L_3914844_SNP [dm3] 3L_3914844_SNP [dm6]	T	A	2.362e^-4	0.853	INTRON Eip63F-1
3R	20924791	3R_20924791_SNP [dm3] 3R_25099069_SNP [dm6]	A	T	2.370e^-4	0.853	INTRON CG33095 & 1 other
2L	16489018	2L_16489018_SNP [dm3] 2L_16489018_SNP [dm6]	G	A	2.373e^-4	0.853	SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	14461440	3R_14461440_SNP [dm3] 3R_18635718_SNP [dm6]	G	C	2.386e^-4	0.853	INTRON qin & 1 other
3L	15139351	3L_15139351_SNP [dm3] 3L_15146251_SNP [dm6]	T	A	2.389e^-4	0.853	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3	TF binding site BDTNP1_TFBS_dl
3R	26478776	3R_26478776_SNP [dm3] 3R_30653054_SNP [dm6]	A	T	2.392e^-4	0.853	INTERGENIC
2L	5500909	2L_5500909_SNP [dm3] 2L_5500909_SNP [dm6]	A	T	2.392e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26582483	3R_26582483_DEL [dm3] 3R_30756761_DEL [dm6]	TCGTACGATCT...	T	2.396e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21926801	3R_21926801_SNP [dm3] 3R_26101079_SNP [dm6]	G	A	2.404e^-4	0.853	INTERGENIC
2L	11382523	2L_11382523_SNP [dm3] 2L_11382523_SNP [dm6]	G	C	2.406e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
2R	2963156	2R_2963156_SNP [dm3] 2R_7075651_SNP [dm6]	C	A	2.408e^-4	0.853	INTERGENIC
2R	11320071	2R_11320071_SNP [dm3] 2R_15432566_SNP [dm6]	G	A	2.412e^-4	0.853	INTRON CG43729	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2166926	3L_2166926_SNP [dm3] 3L_2166926_SNP [dm6]	G	A	2.415e^-4	0.853	DOWNSTREAM CG15879 INTERGENIC
2L	12959982	2L_12959982_SNP [dm3] 2L_12959982_SNP [dm6]	G	T	2.419e^-4	0.853	INTERGENIC
3R	15295878	3R_15295878_SNP [dm3] 3R_19470156_SNP [dm6]	G	T	2.420e^-4	0.853	INTRON Dys
3R	17219583	3R_17219583_SNP [dm3] 3R_21393861_SNP [dm6]	G	C	2.421e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20603245	3R_20603245_SNP [dm3] 3R_24777523_SNP [dm6]	C	A	2.437e^-4	0.853	INTRON CG42331
2L	10562571	2L_10562571_SNP [dm3] 2L_10562571_SNP [dm6]	A	G	2.438e^-4	0.853	INTRON Trim9
X	8716736	X_8716736_SNP [dm3] X_8822703_SNP [dm6]	G	A	2.443e^-4	0.853	INTERGENIC
2L	11573384	2L_11573384_SNP [dm3] 2L_11573384_SNP [dm6]	C	T	2.446e^-4	0.853	INTERGENIC
X	17422729	X_17422729_SNP [dm3] X_17528696_SNP [dm6]	A	T	2.449e^-4	0.853	INTRON CG43658
3R	19731853	3R_19731853_SNP [dm3] 3R_23906131_SNP [dm6]	C	T	2.450e^-4	0.853	INTRON sba
2L	4194615	2L_4194615_SNP [dm3] 2L_4194615_SNP [dm6]	A	C	2.450e^-4	0.853	INTRON CG3714
3R	7540199	3R_7540199_SNP [dm3] 3R_11714477_SNP [dm6]	A	T	2.452e^-4	0.853	INTERGENIC
X	15172213	X_15172213_INS [dm3] X_15278180_INS [dm6]	G	GCTCG	2.458e^-4	0.853	INTERGENIC
3L	7227677	3L_7227677_SNP [dm3] 3L_7234577_SNP [dm6]	C	T	2.459e^-4	0.853	UTR_5_PRIME CG14826 UPSTREAM CG14826
3L	15350417	3L_15350417_SNP [dm3] 3L_15357317_SNP [dm6]	A	G	2.469e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16258370	3R_16258370_SNP [dm3] 3R_20432648_SNP [dm6]	T	C	2.469e^-4	0.853	INTRON Gfrl
3R	19464652	3R_19464652_SNP [dm3] 3R_23638930_SNP [dm6]	A	G	2.474e^-4	0.853	INTRON CG31145
2R	10020439	2R_10020439_SNP [dm3] 2R_14132934_SNP [dm6]	T	C	2.479e^-4	0.853	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	11311227	2R_11311227_SNP [dm3] 2R_15423722_SNP [dm6]	C	T	2.481e^-4	0.853	NON_SYNONYMOUS_CODING CG30472 INTRON CG43729
3R	5677858	3R_5677858_SNP [dm3] 3R_9852136_SNP [dm6]	T	C	2.485e^-4	0.853	INTRON Teh1
2R	17764891	2R_17764891_DEL [dm3] 2R_21877386_DEL [dm6]	TTACAATAGT	T	2.485e^-4	0.853	INTRON Fili	TF binding site mE1_TFBS_cnc
3L	15152490	3L_15152490_SNP [dm3] 3L_15159390_SNP [dm6]	G	A	2.487e^-4	0.853	SYNONYMOUS_CODING Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13892648	2R_13892648_SNP [dm3] 2R_18005143_SNP [dm6]	T	G	2.494e^-4	0.853	UPSTREAM CR44419 INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14462174	3R_14462174_SNP [dm3] 3R_18636452_SNP [dm6]	G	A	2.501e^-4	0.853	INTRON qin & 1 other
2L	12124203	2L_12124203_SNP [dm3] 2L_12124203_SNP [dm6]	G	C	2.502e^-4	0.853	INTRON CG17211
2R	12434795	2R_12434795_MNP [dm3] 2R_16547290_MNP [dm6]	TTT	GAA	2.515e^-4	0.853	INTERGENIC
3R	9395840	3R_9395840_DEL [dm3] 3R_13570118_DEL [dm6]	CATACTTTTATAC...	C	2.516e^-4	0.853	INTERGENIC
3R	7540206	3R_7540206_SNP [dm3] 3R_11714484_SNP [dm6]	T	G	2.529e^-4	0.853	INTERGENIC
2R	18336912	2R_18336912_SNP [dm3] 2R_22449407_SNP [dm6]	A	G	2.534e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11909129	3L_11909129_SNP [dm3] 3L_11916029_SNP [dm6]	A	T	2.534e^-4	0.853	INTRON CG44837
3L	6907104	3L_6907104_SNP [dm3] 3L_6914004_SNP [dm6]	A	G	2.535e^-4	0.853	UPSTREAM Prat2 INTRON Prat2
2L	1855809	2L_1855809_SNP [dm3] 2L_1855809_SNP [dm6]	T	C	2.540e^-4	0.853	INTRON wry
X	19158473	X_19158473_SNP [dm3] X_19264440_SNP [dm6]	C	G	2.542e^-4	0.853	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15628506	3R_15628506_SNP [dm3] 3R_19802784_SNP [dm6]	T	A	2.545e^-4	0.853	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	701520	3L_701520_SNP [dm3] 3L_701520_SNP [dm6]	G	C	2.546e^-4	0.853	INTERGENIC
X	4551431	X_4551431_SNP [dm3] X_4657398_SNP [dm6]	C	T	2.564e^-4	0.853	SYNONYMOUS_CODING Cbp80 DOWNSTREAM CG3009	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	20672391	3L_20672391_SNP [dm3] 3L_20679291_SNP [dm6]	G	C	2.582e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20017028	X_20017028_SNP [dm3] X_20122995_SNP [dm6]	G	C	2.583e^-4	0.853	UTR_3_PRIME CG34331 INTRON CG34331
3R	17210269	3R_17210269_DEL [dm3] 3R_21384547_DEL [dm6]	ACCTTTGGA	A	2.584e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
2L	8770540	2L_8770540_SNP [dm3] 2L_8770540_SNP [dm6]	T	G	2.586e^-4	0.853	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3L	18658802	3L_18658802_SNP [dm3] 3L_18665702_SNP [dm6]	C	A	2.605e^-4	0.853	SYNONYMOUS_CODING MYPT-75D INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5360341	2L_5360341_SNP [dm3] 2L_5360341_SNP [dm6]	T	C	2.614e^-4	0.853	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18408998	X_18408998_MNP [dm3] X_18514965_MNP [dm6]	AACAACA	GTGTTGT	2.616e^-4	0.853	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	19053682	X_19053682_SNP [dm3] X_19159649_SNP [dm6]	A	G	2.624e^-4	0.853	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4510231	3L_4510231_SNP [dm3] 3L_4510231_SNP [dm6]	A	G	2.636e^-4	0.853	DOWNSTREAM Tie INTERGENIC
3R	18753207	3R_18753207_SNP [dm3] 3R_22927485_SNP [dm6]	A	G	2.643e^-4	0.853	INTRON klg
2R	4573140	2R_4573140_SNP [dm3] 2R_8685635_SNP [dm6]	T	C	2.644e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15139298	3L_15139298_SNP [dm3] 3L_15146198_SNP [dm6]	T	C	2.646e^-4	0.853	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3R	26818459	3R_26818459_DEL [dm3] 3R_30992737_DEL [dm6]	AA	C	2.648e^-4	0.853	UPSTREAM CG31007 INTRON 5-HT7
3L	17019596	3L_17019596_SNP [dm3] 3L_17026496_SNP [dm6]	C	T	2.648e^-4	0.853	SYNONYMOUS_CODING Fit2	TF binding site mE1_TFBS_cad
2R	16216100	2R_16216100_SNP [dm3] 2R_20328595_SNP [dm6]	A	G	2.653e^-4	0.853	SYNONYMOUS_CODING CG8929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4233387	3L_4233387_SNP [dm3] 3L_4233387_SNP [dm6]	C	T	2.657e^-4	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	834103	3L_834103_SNP [dm3] 3L_834103_SNP [dm6]	T	C	2.663e^-4	0.853	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14452488	2L_14452488_SNP [dm3] 2L_14452488_SNP [dm6]	C	A	2.664e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9407790	3R_9407790_SNP [dm3] 3R_13582068_SNP [dm6]	C	A	2.669e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4194600	2L_4194600_SNP [dm3] 2L_4194600_SNP [dm6]	A	G	2.672e^-4	0.853	INTRON CG3714
3L	6987171	3L_6987171_SNP [dm3] 3L_6994071_SNP [dm6]	C	T	2.676e^-4	0.853	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21902110	X_21902110_INS [dm3] X_22500274_INS [dm6]	T	TAGTTT	2.681e^-4	0.853	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21381023	3R_21381023_SNP [dm3] 3R_25555301_SNP [dm6]	A	T	2.694e^-4	0.853	INTRON msi
X	13202601	X_13202601_SNP [dm3] X_13308568_SNP [dm6]	A	T	2.698e^-4	0.853	DOWNSTREAM CR45018 INTRON IP3K2
2L	4911284	2L_4911284_SNP [dm3] 2L_4911284_SNP [dm6]	C	T	2.702e^-4	0.853	NON_SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5124428	2L_5124428_SNP [dm3] 2L_5124428_SNP [dm6]	A	G	2.704e^-4	0.853	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3R	24936840	3R_24936840_SNP [dm3] 3R_29111118_SNP [dm6]	A	C	2.704e^-4	0.853	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2684216	3L_2684216_SNP [dm3] 3L_2684216_SNP [dm6]	G	A	2.705e^-4	0.853	INTRON Fife
3R	27181549	3R_27181549_SNP [dm3] 3R_31355827_SNP [dm6]	C	T	2.710e^-4	0.853	INTRON CG34347
3R	14745351	3R_14745351_SNP [dm3] 3R_18919629_SNP [dm6]	G	A	2.712e^-4	0.853	UPSTREAM Xrp1 INTRON Xrp1
3L	15199043	3L_15199043_SNP [dm3] 3L_15205943_SNP [dm6]	A	C	2.717e^-4	0.853	INTERGENIC
2L	12251403	2L_12251403_SNP [dm3] 2L_12251403_SNP [dm6]	C	T	2.729e^-4	0.853	INTRON aret
2L	3390616	2L_3390616_SNP [dm3] 2L_3390616_SNP [dm6]	A	C	2.731e^-4	0.853	DOWNSTREAM CR44791 INTERGENIC
X	8935963	X_8935963_SNP [dm3] X_9041930_SNP [dm6]	C	A	2.736e^-4	0.853	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26815203	3R_26815203_SNP [dm3] 3R_30989481_SNP [dm6]	G	A	2.737e^-4	0.853	UTR_3_PRIME CG31008 INTRON 5-HT7
3L	834078	3L_834078_SNP [dm3] 3L_834078_SNP [dm6]	G	T	2.738e^-4	0.853	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	18754005	X_18754005_DEL [dm3] X_18859972_DEL [dm6]	AA	T	2.743e^-4	0.853	UTR_3_PRIME CG7288 UPSTREAM CG32544
2L	1121845	2L_1121845_SNP [dm3] 2L_1121845_SNP [dm6]	T	A	2.747e^-4	0.853	INTRON Pino
2R	15037923	2R_15037923_SNP [dm3] 2R_19150418_SNP [dm6]	T	A	2.754e^-4	0.853	INTRON ena	TF binding site mE1_TFBS_Trl
3R	23398962	3R_23398962_SNP [dm3] 3R_27573240_SNP [dm6]	C	A	2.760e^-4	0.853	INTRON wdb
3L	5314605	3L_5314605_SNP [dm3] 3L_5321505_SNP [dm6]	T	A	2.763e^-4	0.853	INTERGENIC
2L	14244859	2L_14244859_SNP [dm3] 2L_14244859_SNP [dm6]	C	T	2.765e^-4	0.853	INTERGENIC
3L	10875028	3L_10875028_SNP [dm3] 3L_10881928_SNP [dm6]	C	A	2.768e^-4	0.853	UPSTREAM CG7949 INTRON CG6409
2L	3946782	2L_3946782_INS [dm3] 2L_3946782_INS [dm6]	T	TT	2.771e^-4	0.853	INTRON fred
2L	8847828	2L_8847828_SNP [dm3] 2L_8847828_SNP [dm6]	T	C	2.782e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10017524	2R_10017524_SNP [dm3] 2R_14130019_SNP [dm6]	G	A	2.793e^-4	0.853	INTRON Prosap
X	10285189	X_10285189_SNP [dm3] X_10391156_SNP [dm6]	G	C	2.795e^-4	0.853	INTRON flw
2R	10735183	2R_10735183_SNP [dm3] 2R_14847678_SNP [dm6]	C	A	2.798e^-4	0.853	SYNONYMOUS_CODING CG10209 DOWNSTREAM SMC2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	14667495	3R_14667495_SNP [dm3] 3R_18841773_SNP [dm6]	G	A	2.798e^-4	0.853	INTRON CG18208
X	10024147	X_10024147_SNP [dm3] X_10130114_SNP [dm6]	T	A	2.810e^-4	0.853	INTRON CR44894 & 1 other
3R	25299416	3R_25299416_SNP [dm3] 3R_29473694_SNP [dm6]	A	C	2.810e^-4	0.853	INTRON Ptp99A
3L	18537946	3L_18537946_SNP [dm3] 3L_18544846_SNP [dm6]	A	T	2.812e^-4	0.853	INTERGENIC
3L	16977850	3L_16977850_SNP [dm3] 3L_16984750_SNP [dm6]	A	G	2.815e^-4	0.853	INTRON Exn
2R	13765009	2R_13765009_SNP [dm3] 2R_17877504_SNP [dm6]	A	C	2.821e^-4	0.853	DOWNSTREAM CG30325 INTRON Elk
2R	12434798	2R_12434798_DEL [dm3] 2R_16547293_DEL [dm6]	TCCGGCGGTCA...	T	2.824e^-4	0.853	INTERGENIC
2R	10013717	2R_10013717_SNP [dm3] 2R_14126212_SNP [dm6]	G	A	2.826e^-4	0.853	INTRON Prosap
3L	14584881	3L_14584881_SNP [dm3] 3L_14591781_SNP [dm6]	A	C	2.829e^-4	0.853	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2L	13232968	2L_13232968_SNP [dm3] 2L_13232968_SNP [dm6]	C	T	2.834e^-4	0.853	SYNONYMOUS_CODING Prosalpha6T DOWNSTREAM CG15479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12577046	3L_12577046_SNP [dm3] 3L_12583946_SNP [dm6]	T	C	2.836e^-4	0.853	INTRON ara	TF binding site mE1_TFBS_sens
X	10137912	X_10137912_SNP [dm3] X_10243879_SNP [dm6]	C	G	2.840e^-4	0.853	UTR_5_PRIME Hk INTRON Hk
2R	14318941	2R_14318941_SNP [dm3] 2R_18431436_SNP [dm6]	A	G	2.843e^-4	0.853	SYNONYMOUS_CODING CG30118	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18312039	3L_18312039_SNP [dm3] 3L_18318939_SNP [dm6]	T	C	2.845e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3568225	2R_3568225_SNP [dm3] 2R_7680720_SNP [dm6]	T	A	2.848e^-4	0.853	INTRON CG1399
3R	14334602	3R_14334602_SNP [dm3] 3R_18508880_SNP [dm6]	G	C	2.849e^-4	0.853	INTRON fru
2R	1963353	2R_1963353_SNP [dm3] 2R_6075848_SNP [dm6]	C	G	2.849e^-4	0.853	NON_SYNONYMOUS_CODING CG7845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15139292	3L_15139292_SNP [dm3] 3L_15146192_SNP [dm6]	G	A	2.854e^-4	0.853	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	1350818	3L_1350818_SNP [dm3] 3L_1350818_SNP [dm6]	T	C	2.860e^-4	0.853	UPSTREAM 312 & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11573668	2L_11573668_SNP [dm3] 2L_11573668_SNP [dm6]	T	C	2.861e^-4	0.853	INTERGENIC
2R	10016219	2R_10016219_SNP [dm3] 2R_14128714_SNP [dm6]	C	G	2.862e^-4	0.853	INTRON Prosap
3R	25628274	3R_25628274_SNP [dm3] 3R_29802552_SNP [dm6]	T	C	2.867e^-4	0.853	SYNONYMOUS_CODING CG7834 UPSTREAM CG7789 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18591689	3L_18591689_SNP [dm3] 3L_18598589_SNP [dm6]	A	T	2.873e^-4	0.853	DOWNSTREAM CR45390 INTERGENIC
3R	10405546	3R_10405546_SNP [dm3] 3R_14579824_SNP [dm6]	A	G	2.874e^-4	0.853	INTRON stumps	TF binding site mE1_TFBS_Trl
3R	18025308	3R_18025308_SNP [dm3] 3R_22199586_SNP [dm6]	C	T	2.881e^-4	0.853	INTRON SKIP & 1 other
3R	11319407	3R_11319407_SNP [dm3] 3R_15493685_SNP [dm6]	T	A	2.883e^-4	0.853	UPSTREAM CG5213 DOWNSTREAM CG5205 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7219451	2L_7219451_SNP [dm3] 2L_7219451_SNP [dm6]	A	G	2.884e^-4	0.853	UTR_5_PRIME CG13784 DOWNSTREAM ico INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19464939	3R_19464939_SNP [dm3] 3R_23639217_SNP [dm6]	T	A	2.884e^-4	0.853	INTRON CG31145	TF binding site mE1_TFBS_inv
3R	21849846	3R_21849846_SNP [dm3] 3R_26024124_SNP [dm6]	A	G	2.887e^-4	0.853	SYNONYMOUS_CODING E_spl_m4-BFM DOWNSTREAM E_spl_m3-HLH	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10174257	2R_10174257_SNP [dm3] 2R_14286752_SNP [dm6]	A	G	2.888e^-4	0.853	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	9135970	3L_9135970_SNP [dm3] 3L_9142870_SNP [dm6]	A	C	2.901e^-4	0.853	UTR_3_PRIME nwk DOWNSTREAM nwk INTRON nwk
3L	13251375	3L_13251375_SNP [dm3] 3L_13258275_SNP [dm6]	T	G	2.901e^-4	0.853	INTRON caps
3R	26805042	3R_26805042_SNP [dm3] 3R_30979320_SNP [dm6]	G	T	2.908e^-4	0.853	INTRON 5-HT7
3R	15295904	3R_15295904_SNP [dm3] 3R_19470182_SNP [dm6]	G	T	2.923e^-4	0.853	INTRON Dys
3L	4510238	3L_4510238_SNP [dm3] 3L_4510238_SNP [dm6]	T	A	2.924e^-4	0.853	DOWNSTREAM Tie INTERGENIC
2L	1672260	2L_1672260_SNP [dm3] 2L_1672260_SNP [dm6]	T	A	2.927e^-4	0.853	INTRON chinmo
2R	17402254	2R_17402254_SNP [dm3] 2R_21514749_SNP [dm6]	C	T	2.927e^-4	0.853	UTR_3_PRIME MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3R	9034295	3R_9034295_SNP [dm3] 3R_13208573_SNP [dm6]	T	A	2.927e^-4	0.853	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11909135	3L_11909135_SNP [dm3] 3L_11916035_SNP [dm6]	T	A	2.935e^-4	0.853	INTRON CG44837
2R	19111512	2R_19111512_DEL [dm3] 2R_23223989_DEL [dm6]	GC	G	2.937e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	832917	3L_832917_SNP [dm3] 3L_832917_SNP [dm6]	C	T	2.940e^-4	0.853	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	833323	3L_833323_SNP [dm3] 3L_833323_SNP [dm6]	C	T	2.940e^-4	0.853	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi28S-3308 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	4512106	3L_4512106_SNP [dm3] 3L_4512106_SNP [dm6]	T	A	2.941e^-4	0.853	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5500931	2L_5500931_SNP [dm3] 2L_5500931_SNP [dm6]	T	C	2.952e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17264375	3L_17264375_SNP [dm3] 3L_17271275_SNP [dm6]	T	A	2.952e^-4	0.853	INTERGENIC
2L	20025904	2L_20025904_INS [dm3] 2L_20025904_INS [dm6]	A	AC	2.955e^-4	0.853	UPSTREAM CG10659 INTERGENIC	transposable element FlyBase
3L	10493188	3L_10493188_SNP [dm3] 3L_10500088_SNP [dm6]	T	A	2.966e^-4	0.853	INTRON A2bp1
3R	26185664	3R_26185664_SNP [dm3] 3R_30359942_SNP [dm6]	G	A	2.968e^-4	0.853	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	14324820	3L_14324820_SNP [dm3] 3L_14331720_SNP [dm6]	A	T	2.970e^-4	0.853	INTRON fz
2L	4197284	2L_4197284_SNP [dm3] 2L_4197284_SNP [dm6]	T	C	2.980e^-4	0.853	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	4907016	2L_4907016_SNP [dm3] 2L_4907016_SNP [dm6]	A	G	2.993e^-4	0.853	UPSTREAM CG2837 INTERGENIC
2R	6727975	2R_6727975_SNP [dm3] 2R_10840470_SNP [dm6]	T	C	3.011e^-4	0.853	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6584626	2L_6584626_SNP [dm3] 2L_6584626_SNP [dm6]	C	T	3.014e^-4	0.853	INTRON CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1580126	3L_1580126_SNP [dm3] 3L_1580126_SNP [dm6]	A	G	3.019e^-4	0.853	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13229114	3L_13229114_SNP [dm3] 3L_13236014_SNP [dm6]	C	T	3.024e^-4	0.853	INTRON caps
X	9910036	X_9910036_SNP [dm3] X_10016003_SNP [dm6]	G	A	3.027e^-4	0.853	UPSTREAM Cht6 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8706915	2L_8706915_SNP [dm3] 2L_8706915_SNP [dm6]	G	A	3.029e^-4	0.853	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3L	4514633	3L_4514633_SNP [dm3] 3L_4514633_SNP [dm6]	T	G	3.041e^-4	0.853	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4512090	3L_4512090_SNP [dm3] 3L_4512090_SNP [dm6]	C	T	3.042e^-4	0.853	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18268861	3R_18268861_SNP [dm3] 3R_22443139_SNP [dm6]	A	G	3.055e^-4	0.853	SYNONYMOUS_CODING CG12499
3R	27083819	3R_27083819_DEL [dm3] 3R_31258097_DEL [dm6]	AT	G	3.055e^-4	0.853	INTRON CG3669
3L	833038	3L_833038_SNP [dm3] 3L_833038_SNP [dm6]	G	T	3.060e^-4	0.853	UPSTREAM snoRNA:Psi28S-3308 DOWNSTREAM snoRNA:Psi18S-1086 INTRON CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	833750	3L_833750_INS [dm3] 3L_833750_INS [dm6]	A	AAAGATTTTATTTTAAGATT...	3.061e^-4	0.853	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18312446	3L_18312446_SNP [dm3] 3L_18319346_SNP [dm6]	A	T	3.062e^-4	0.853	INTERGENIC
3L	15150583	3L_15150583_SNP [dm3] 3L_15157483_SNP [dm6]	T	C	3.063e^-4	0.853	INTRON Msh6	TF binding site mE1_TFBS_sens
X	18973978	X_18973978_SNP [dm3] X_19079945_SNP [dm6]	C	A	3.064e^-4	0.853	INTERGENIC
3R	5206105	3R_5206105_SNP [dm3] 3R_9380383_SNP [dm6]	G	T	3.066e^-4	0.853	INTRON FER	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6531250	2L_6531250_SNP [dm3] 2L_6531250_SNP [dm6]	C	T	3.067e^-4	0.853	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	13201583	X_13201583_SNP [dm3] X_13307550_SNP [dm6]	C	T	3.071e^-4	0.853	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
2L	14165517	2L_14165517_SNP [dm3] 2L_14165517_SNP [dm6]	G	A	3.074e^-4	0.853	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26811009	3R_26811009_INS [dm3] 3R_30985287_INS [dm6]	A	AA	3.085e^-4	0.853	INTRON 5-HT7
3L	12849627	3L_12849627_SNP [dm3] 3L_12856527_SNP [dm6]	C	A	3.088e^-4	0.853	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
2R	12032990	2R_12032990_SNP [dm3] 2R_16145485_SNP [dm6]	G	T	3.093e^-4	0.853	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
X	21464120	X_21464120_SNP [dm3] X_21593093_SNP [dm6]	T	C	3.093e^-4	0.853	INTERGENIC
2R	18579346	2R_18579346_SNP [dm3] 2R_22691841_SNP [dm6]	A	T	3.096e^-4	0.853	DOWNSTREAM robo EXON CR44764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12168374	2L_12168374_SNP [dm3] 2L_12168374_SNP [dm6]	G	T	3.104e^-4	0.853	SPLICE_SITE_REGION CG31760 INTRON CG31760
X	7317264	X_7317264_SNP [dm3] X_7423231_SNP [dm6]	G	A	3.108e^-4	0.853	INTERGENIC
3R	27075970	3R_27075970_SNP [dm3] 3R_31250248_SNP [dm6]	G	A	3.111e^-4	0.853	INTRON qless
3L	23116957	3L_23116957_INS [dm3] 3L_23123857_INS [dm6]	G	GAGTTAAGTCCGTGATCGAG...	3.111e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
3L	22626160	3L_22626160_SNP [dm3] 3L_22633060_SNP [dm6]	C	T	3.114e^-4	0.853	INTRON CG14459
2L	17529894	2L_17529894_SNP [dm3] 2L_17529894_SNP [dm6]	T	A	3.119e^-4	0.853	NON_SYNONYMOUS_CODING CG15145 UPSTREAM CG15144	TF binding site mE1_TFBS_sens
3L	15139295	3L_15139295_SNP [dm3] 3L_15146195_SNP [dm6]	T	A	3.132e^-4	0.853	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	2566019	3L_2566019_SNP [dm3] 3L_2566019_SNP [dm6]	A	T	3.135e^-4	0.853	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1916836	3R_1916836_SNP [dm3] 3R_6091114_SNP [dm6]	A	G	3.145e^-4	0.853	INTRON Gasp
3R	9034298	3R_9034298_SNP [dm3] 3R_13208576_SNP [dm6]	A	C	3.161e^-4	0.853	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8934187	X_8934187_SNP [dm3] X_9040154_SNP [dm6]	G	A	3.164e^-4	0.853	SYNONYMOUS_CODING CG42388 UTR_5_PRIME CG42388 INTRON CR43836 & 1 other
2L	18186035	2L_18186035_SNP [dm3] 2L_18186035_SNP [dm6]	T	G	3.171e^-4	0.853	UPSTREAM CR44900 INTRON CG42750	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8716744	X_8716744_SNP [dm3] X_8822711_SNP [dm6]	A	T	3.175e^-4	0.853	INTERGENIC
3L	10635503	3L_10635503_SNP [dm3] 3L_10642403_SNP [dm6]	G	A	3.178e^-4	0.853	SYNONYMOUS_CODING CG14154 INTRON CG32066
3L	10750977	3L_10750977_SNP [dm3] 3L_10757877_SNP [dm6]	G	A	3.178e^-4	0.853	INTERGENIC
3R	22959153	3R_22959153_INS [dm3] 3R_27133431_INS [dm6]	C	CCCA	3.182e^-4	0.853	INTRON CG6051
2L	4724435	2L_4724435_INS [dm3] 2L_4724435_INS [dm6]	C	CGAACAAAGTAGTTTGC...	3.184e^-4	0.853	INTERGENIC
3R	13004767	3R_13004767_SNP [dm3] 3R_17179045_SNP [dm6]	A	T	3.185e^-4	0.853	INTRON Mur89F
3R	20207776	3R_20207776_SNP [dm3] 3R_24382054_SNP [dm6]	G	T	3.187e^-4	0.853	DOWNSTREAM CG17780 INTERGENIC
X	19775186	X_19775186_SNP [dm3] X_19881153_SNP [dm6]	G	A	3.187e^-4	0.853	INTRON Hers
3L	15139262	3L_15139262_SNP [dm3] 3L_15146162_SNP [dm6]	A	C	3.191e^-4	0.853	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3R	14085272	3R_14085272_SNP [dm3] 3R_18259550_SNP [dm6]	A	G	3.212e^-4	0.853	INTERGENIC
2R	7089508	2R_7089508_SNP [dm3] 2R_11202003_SNP [dm6]	C	T	3.224e^-4	0.853	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11209442	2L_11209442_SNP [dm3] 2L_11209442_SNP [dm6]	G	T	3.230e^-4	0.853	INTERGENIC	silencer mE1_HDAC_PRE
3R	18025307	3R_18025307_SNP [dm3] 3R_22199585_SNP [dm6]	C	T	3.235e^-4	0.853	INTRON SKIP & 1 other
3R	11309752	3R_11309752_SNP [dm3] 3R_15484030_SNP [dm6]	G	T	3.238e^-4	0.853	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
3L	21925905	3L_21925905_SNP [dm3] 3L_21932805_SNP [dm6]	T	C	3.241e^-4	0.853	DOWNSTREAM mub INTERGENIC
3L	10875035	3L_10875035_SNP [dm3] 3L_10881935_SNP [dm6]	A	T	3.252e^-4	0.853	UPSTREAM CG7949 INTRON CG6409
3L	18841333	3L_18841333_SNP [dm3] 3L_18848233_SNP [dm6]	C	A	3.255e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10826522	3L_10826522_SNP [dm3] 3L_10833422_SNP [dm6]	A	T	3.262e^-4	0.853	INTERGENIC
3R	3149013	3R_3149013_SNP [dm3] 3R_7323291_SNP [dm6]	A	C	3.271e^-4	0.853	INTERGENIC
3L	18210449	3L_18210449_SNP [dm3] 3L_18217349_SNP [dm6]	G	T	3.274e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17020716	3L_17020716_SNP [dm3] 3L_17027616_SNP [dm6]	A	G	3.275e^-4	0.853	UTR_5_PRIME CG7730 DOWNSTREAM Fit2
2R	10013719	2R_10013719_SNP [dm3] 2R_14126214_SNP [dm6]	C	T	3.285e^-4	0.853	INTRON Prosap
2L	4025013	2L_4025013_SNP [dm3] 2L_4025013_SNP [dm6]	C	G	3.287e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22615360	3R_22615360_SNP [dm3] 3R_26789638_SNP [dm6]	A	T	3.288e^-4	0.853	INTERGENIC
2R	12441954	2R_12441954_SNP [dm3] 2R_16554449_SNP [dm6]	T	A	3.294e^-4	0.853	UPSTREAM Syn2 INTRON Syn2
2R	6587359	2R_6587359_SNP [dm3] 2R_10699854_SNP [dm6]	G	A	3.294e^-4	0.853	INTRON stan	TF binding site mE1_TFBS_HSA
3L	5314601	3L_5314601_SNP [dm3] 3L_5321501_SNP [dm6]	G	A	3.295e^-4	0.853	INTERGENIC
3L	20509837	3L_20509837_SNP [dm3] 3L_20516737_SNP [dm6]	T	C	3.296e^-4	0.853	START_GAINED CG5059 UTR_5_PRIME CG5059 INTRON CG5059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14573576	3L_14573576_SNP [dm3] 3L_14580476_SNP [dm6]	T	A	3.297e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11208975	2L_11208975_SNP [dm3] 2L_11208975_SNP [dm6]	A	G	3.298e^-4	0.853	INTERGENIC
2R	1969458	2R_1969458_SNP [dm3] 2R_6081953_SNP [dm6]	A	T	3.304e^-4	0.853	SYNONYMOUS_CODING Ars2 UTR_3_PRIME Ars2
3L	17019696	3L_17019696_SNP [dm3] 3L_17026596_SNP [dm6]	A	G	3.304e^-4	0.853	NON_SYNONYMOUS_CODING Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2L	3994876	2L_3994876_SNP [dm3] 2L_3994876_SNP [dm6]	C	G	3.309e^-4	0.853	INTERGENIC
3R	9544905	3R_9544905_SNP [dm3] 3R_13719183_SNP [dm6]	T	C	3.313e^-4	0.853	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6469998	2L_6469998_SNP [dm3] 2L_6469998_SNP [dm6]	A	C	3.316e^-4	0.853	INTRON mmy	TF binding site mE1_TFBS_cad
3R	23129397	3R_23129397_SNP [dm3] 3R_27303675_SNP [dm6]	C	A	3.321e^-4	0.853	INTRON CG3339
3R	10653140	3R_10653140_SNP [dm3] 3R_14827418_SNP [dm6]	T	A	3.321e^-4	0.853	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	4573150	2R_4573150_SNP [dm3] 2R_8685645_SNP [dm6]	T	C	3.328e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10515415	3L_10515415_SNP [dm3] 3L_10522315_SNP [dm6]	G	A	3.336e^-4	0.853	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7200677	3L_7200677_SNP [dm3] 3L_7207577_SNP [dm6]	T	A	3.338e^-4	0.853	INTERGENIC
3R	20661700	3R_20661700_SNP [dm3] 3R_24835978_SNP [dm6]	T	C	3.339e^-4	0.853	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
X	14547176	X_14547176_SNP [dm3] X_14653143_SNP [dm6]	C	T	3.339e^-4	0.853	SYNONYMOUS_CODING NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	19464950	3R_19464950_SNP [dm3] 3R_23639228_SNP [dm6]	T	A	3.348e^-4	0.853	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	994897	2L_994897_SNP [dm3] 2L_994897_SNP [dm6]	T	G	3.349e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18842475	3L_18842475_SNP [dm3] 3L_18849375_SNP [dm6]	T	A	3.350e^-4	0.853	INTERGENIC
2L	5876473	2L_5876473_SNP [dm3] 2L_5876473_SNP [dm6]	T	C	3.353e^-4	0.853	INTRON rau
3R	10282433	3R_10282433_SNP [dm3] 3R_14456711_SNP [dm6]	T	A	3.358e^-4	0.853	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10282450	3R_10282450_DEL [dm3] 3R_14456728_DEL [dm6]	CTA	C	3.358e^-4	0.853	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10411610	3R_10411610_SNP [dm3] 3R_14585888_SNP [dm6]	A	T	3.363e^-4	0.853	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24531557	3R_24531557_SNP [dm3] 3R_28705835_SNP [dm6]	C	T	3.364e^-4	0.853	NON_SYNONYMOUS_CODING htt
2L	4282118	2L_4282118_SNP [dm3] 2L_4282118_SNP [dm6]	C	T	3.369e^-4	0.853	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	3496578	3L_3496578_SNP [dm3] 3L_3496578_SNP [dm6]	C	T	3.372e^-4	0.853	INTRON CG42324
2R	18572060	2R_18572060_SNP [dm3] 2R_22684555_SNP [dm6]	A	G	3.373e^-4	0.853	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8171130	3L_8171130_SNP [dm3] 3L_8178030_SNP [dm6]	G	A	3.376e^-4	0.853	DOWNSTREAM mthl7 INTRON Nmt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	839312	3L_839312_SNP [dm3] 3L_839312_SNP [dm6]	C	T	3.377e^-4	0.853	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3L	12081600	3L_12081600_SNP [dm3] 3L_12088500_SNP [dm6]	C	T	3.381e^-4	0.853	UPSTREAM CG17154 INTERGENIC
3L	18121991	3L_18121991_SNP [dm3] 3L_18128891_SNP [dm6]	A	T	3.381e^-4	0.853	DOWNSTREAM Cyp312a1 INTERGENIC
2R	15125833	2R_15125833_SNP [dm3] 2R_19238328_SNP [dm6]	G	A	3.385e^-4	0.853	INTRON cora
3L	1828492	3L_1828492_SNP [dm3] 3L_1828492_SNP [dm6]	G	T	3.385e^-4	0.853	INTRON Cpr62Ba
X	16087355	X_16087355_SNP [dm3] X_16193322_SNP [dm6]	T	A	3.387e^-4	0.853	INTERGENIC
3L	1699741	3L_1699741_SNP [dm3] 3L_1699741_SNP [dm6]	C	T	3.388e^-4	0.853	INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13726695	2L_13726695_SNP [dm3] 2L_13726695_SNP [dm6]	A	G	3.389e^-4	0.853	INTERGENIC
2R	16083816	2R_16083816_SNP [dm3] 2R_20196311_SNP [dm6]	G	A	3.396e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19060427	3R_19060427_SNP [dm3] 3R_23234705_SNP [dm6]	T	C	3.398e^-4	0.853	INTRON CG4467
X	7886676	X_7886676_SNP [dm3] X_7992643_SNP [dm6]	G	A	3.404e^-4	0.853	INTERGENIC
2L	16490868	2L_16490868_DEL [dm3] 2L_16490868_DEL [dm6]	TCTCTC	T	3.408e^-4	0.853	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2L	20030978	2L_20030978_SNP [dm3] 2L_20030978_SNP [dm6]	C	T	3.416e^-4	0.854	INTRON sNPF
3R	26811085	3R_26811085_SNP [dm3] 3R_30985363_SNP [dm6]	G	A	3.423e^-4	0.854	INTRON 5-HT7
3L	18841257	3L_18841257_SNP [dm3] 3L_18848157_SNP [dm6]	C	T	3.426e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	4524941	2R_4524941_SNP [dm3] 2R_8637436_SNP [dm6]	G	A	3.435e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4724393	2L_4724393_SNP [dm3] 2L_4724393_SNP [dm6]	G	C	3.439e^-4	0.854	INTERGENIC
2R	4516155	2R_4516155_SNP [dm3] 2R_8628650_SNP [dm6]	T	A	3.444e^-4	0.854	SYNONYMOUS_CODING CG14749	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2809503	3L_2809503_SNP [dm3] 3L_2809503_SNP [dm6]	A	G	3.446e^-4	0.854	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23257204	3R_23257204_SNP [dm3] 3R_27431482_SNP [dm6]	C	T	3.454e^-4	0.854	INTRON side
2R	8026683	2R_8026683_SNP [dm3] 2R_12139178_SNP [dm6]	C	T	3.457e^-4	0.854	UTR_3_PRIME CG18343 DOWNSTREAM skpB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1
2L	20023861	2L_20023861_SNP [dm3] 2L_20023861_SNP [dm6]	G	A	3.462e^-4	0.854	INTERGENIC
X	15104155	X_15104155_SNP [dm3] X_15210122_SNP [dm6]	C	T	3.465e^-4	0.854	UPSTREAM CG5662 INTERGENIC
3L	18312009	3L_18312009_SNP [dm3] 3L_18318909_SNP [dm6]	A	G	3.468e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12816305	3L_12816305_SNP [dm3] 3L_12823205_SNP [dm6]	T	C	3.476e^-4	0.854	SYNONYMOUS_CODING CG42588
3R	11319451	3R_11319451_SNP [dm3] 3R_15493729_SNP [dm6]	A	G	3.483e^-4	0.854	UPSTREAM CG5213 DOWNSTREAM CG5205 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10160469	2R_10160469_SNP [dm3] 2R_14272964_SNP [dm6]	C	T	3.488e^-4	0.854	SYNONYMOUS_CODING conv
X	4534149	X_4534149_SNP [dm3] X_4640116_SNP [dm6]	G	A	3.491e^-4	0.854	SYNONYMOUS_CODING CG3081	TF binding site mE1_TFBS_chinmo
2R	10980255	2R_10980255_SNP [dm3] 2R_15092750_SNP [dm6]	G	A	3.492e^-4	0.854	DOWNSTREAM CR44457 INTERGENIC
3R	19607546	3R_19607546_SNP [dm3] 3R_23781824_SNP [dm6]	G	T	3.503e^-4	0.854	UTR_5_PRIME mbc UPSTREAM Nup98-96	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27567225	3R_27567225_SNP [dm3] 3R_31741503_SNP [dm6]	T	C	3.505e^-4	0.854	INTRON Ef1alpha100E	TF binding site mE1_TFBS_chinmo
3L	1350774	3L_1350774_SNP [dm3] 3L_1350774_SNP [dm6]	T	C	3.506e^-4	0.854	UPSTREAM 312 & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	17019875	3L_17019875_SNP [dm3] 3L_17026775_SNP [dm6]	T	C	3.510e^-4	0.854	SYNONYMOUS_CODING Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3R	26852266	3R_26852266_DEL [dm3] 3R_31026544_DEL [dm6]	AGAGTGCGCCTAAGTGTGCG...	A	3.510e^-4	0.854	INTERGENIC
3L	10873754	3L_10873754_SNP [dm3] 3L_10880654_SNP [dm6]	C	T	3.518e^-4	0.855	DOWNSTREAM CG6409 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4282119	2L_4282119_SNP [dm3] 2L_4282119_SNP [dm6]	T	C	3.536e^-4	0.856	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	18270656	2L_18270656_SNP [dm3] 2L_18270656_SNP [dm6]	T	G	3.540e^-4	0.856	INTRON CG42750
2L	5977496	2L_5977496_SNP [dm3] 2L_5977496_SNP [dm6]	G	A	3.541e^-4	0.856	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10171149	2R_10171149_SNP [dm3] 2R_14283644_SNP [dm6]	T	C	3.543e^-4	0.856	INTRON Ih
3L	707775	3L_707775_SNP [dm3] 3L_707775_SNP [dm6]	T	C	3.544e^-4	0.856	DOWNSTREAM CkIIalpha-i3 INTRON CG13895	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	14244818	2L_14244818_SNP [dm3] 2L_14244818_SNP [dm6]	A	C	3.551e^-4	0.856	INTERGENIC
2L	3338477	2L_3338477_SNP [dm3] 2L_3338477_SNP [dm6]	T	A	3.557e^-4	0.856	INTRON E23	TF binding site mE1_TFBS_Trl
3R	18268972	3R_18268972_SNP [dm3] 3R_22443250_SNP [dm6]	C	T	3.568e^-4	0.858	SYNONYMOUS_CODING CG12499
X	13723102	X_13723102_SNP [dm3] X_13829069_SNP [dm6]	A	G	3.575e^-4	0.858	SYNONYMOUS_CODING jub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18611031	3L_18611031_SNP [dm3] 3L_18617931_SNP [dm6]	T	G	3.576e^-4	0.858	UTR_5_PRIME CG4174 & 1 other UPSTREAM CG13380 & 1 other DOWNSTREAM not	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10828010	3L_10828010_DEL [dm3] 3L_10834910_DEL [dm6]	AGATTGCA	A	3.585e^-4	0.858	INTERGENIC
X	2440667	X_2440667_INS [dm3] X_2546634_INS [dm6]	T	TTCCTAAT	3.590e^-4	0.858	INTERGENIC
X	12183261	X_12183261_SNP [dm3] X_12289228_SNP [dm6]	T	A	3.608e^-4	0.858	INTRON Ten-a
X	19158441	X_19158441_SNP [dm3] X_19264408_SNP [dm6]	G	A	3.614e^-4	0.858	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1368869	3L_1368869_DEL [dm3] 3L_1368869_DEL [dm6]	AA	A	3.623e^-4	0.858	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9412857	3L_9412857_DEL [dm3] 3L_9419757_DEL [dm6]	GATATGG	G	3.625e^-4	0.858	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15795434	3L_15795434_SNP [dm3] 3L_15802334_SNP [dm6]	C	T	3.627e^-4	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	5265722	3R_5265722_SNP [dm3] 3R_9440000_SNP [dm6]	T	C	3.634e^-4	0.858	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12237473	X_12237473_SNP [dm3] X_12343440_SNP [dm6]	C	T	3.635e^-4	0.858	INTERGENIC
3R	9400969	3R_9400969_SNP [dm3] 3R_13575247_SNP [dm6]	G	T	3.637e^-4	0.858	EXON CR43848
3R	21915866	3R_21915866_SNP [dm3] 3R_26090144_SNP [dm6]	A	T	3.638e^-4	0.858	INTRON dys	regulatory region REDfly_CRMs
2L	15280751	2L_15280751_SNP [dm3] 2L_15280751_SNP [dm6]	C	T	3.640e^-4	0.858	DOWNSTREAM CR45349 INTERGENIC
2L	888717	2L_888717_INS [dm3] 2L_888717_INS [dm6]	AG	TTA	3.643e^-4	0.858	INTERGENIC
2L	888723	2L_888723_SNP [dm3] 2L_888723_SNP [dm6]	C	T	3.643e^-4	0.858	INTERGENIC
X	20958897	X_20958897_SNP [dm3] X_21087870_SNP [dm6]	G	A	3.658e^-4	0.859	INTERGENIC
3L	1364150	3L_1364150_SNP [dm3] 3L_1364150_SNP [dm6]	C	T	3.658e^-4	0.859	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3L	10635494	3L_10635494_SNP [dm3] 3L_10642394_SNP [dm6]	C	T	3.663e^-4	0.859	SYNONYMOUS_CODING CG14154 INTRON CG32066
2L	12211614	2L_12211614_DEL [dm3] 2L_12211614_DEL [dm6]	CGGGAGGCAAG...	TT	3.666e^-4	0.859	INTRON aret
3R	18363418	3R_18363418_SNP [dm3] 3R_22537696_SNP [dm6]	A	C	3.670e^-4	0.859	INTRON CG5326
X	16069926	X_16069926_SNP [dm3] X_16175893_SNP [dm6]	G	A	3.673e^-4	0.859	INTERGENIC
2L	8846121	2L_8846121_SNP [dm3] 2L_8846121_SNP [dm6]	G	T	3.683e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8935665	X_8935665_DEL [dm3] X_9041632_DEL [dm6]	AA	A	3.709e^-4	0.86	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5968538	X_5968538_SNP [dm3] X_6074505_SNP [dm6]	T	G	3.713e^-4	0.86	INTRON Tsp5D
3L	15150670	3L_15150670_SNP [dm3] 3L_15157570_SNP [dm6]	G	A	3.719e^-4	0.86	SYNONYMOUS_CODING Msh6	TF binding site mE1_TFBS_sens
2R	17636959	2R_17636959_SNP [dm3] 2R_21749454_SNP [dm6]	T	C	3.720e^-4	0.86	INTERGENIC
3L	7200626	3L_7200626_SNP [dm3] 3L_7207526_SNP [dm6]	C	G	3.721e^-4	0.86	INTERGENIC
2R	4526229	2R_4526229_SNP [dm3] 2R_8638724_SNP [dm6]	C	T	3.723e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10411636	3R_10411636_INS [dm3] 3R_14585914_INS [dm6]	A	AA	3.730e^-4	0.86	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9379108	2L_9379108_DEL [dm3] 2L_9379108_DEL [dm6]	GG	T	3.732e^-4	0.86	INTRON Shawl
2L	8710004	2L_8710004_SNP [dm3] 2L_8710004_SNP [dm6]	G	A	3.733e^-4	0.86	UTR_3_PRIME raw UPSTREAM Hnf4	TF binding site mE1_TFBS_HSA
3R	15868944	3R_15868944_SNP [dm3] 3R_20043222_SNP [dm6]	A	G	3.737e^-4	0.86	SPLICE_SITE_REGION Indy-2 & 1 other INTRON CG17193 & 2 others
3R	27567281	3R_27567281_SNP [dm3] 3R_31741559_SNP [dm6]	A	G	3.738e^-4	0.86	INTRON Ef1alpha100E	TF binding site mE1_TFBS_chinmo
X	6052536	X_6052536_SNP [dm3] X_6158503_SNP [dm6]	T	A	3.739e^-4	0.86	INTRON Ca-alpha1T	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15127877	2R_15127877_SNP [dm3] 2R_19240372_SNP [dm6]	G	A	3.745e^-4	0.86	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10024163	2R_10024163_SNP [dm3] 2R_14136658_SNP [dm6]	C	A	3.748e^-4	0.86	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26811050	3R_26811050_SNP [dm3] 3R_30985328_SNP [dm6]	C	T	3.764e^-4	0.862	INTRON 5-HT7
2L	16226229	2L_16226229_SNP [dm3] 2L_16226229_SNP [dm6]	G	T	3.775e^-4	0.862	INTERGENIC
2L	11758638	2L_11758638_SNP [dm3] 2L_11758638_SNP [dm6]	T	C	3.779e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16924157	X_16924157_SNP [dm3] X_17030124_SNP [dm6]	A	G	3.781e^-4	0.862	INTRON CG45002
2L	11573239	2L_11573239_SNP [dm3] 2L_11573239_SNP [dm6]	T	A	3.789e^-4	0.862	INTERGENIC
2L	8719285	2L_8719285_SNP [dm3] 2L_8719285_SNP [dm6]	T	C	3.793e^-4	0.862	INTRON raw
2L	20497282	2L_20497282_SNP [dm3] 2L_20497282_SNP [dm6]	A	G	3.798e^-4	0.862	INTERGENIC
2L	9249854	2L_9249854_SNP [dm3] 2L_9249854_SNP [dm6]	C	G	3.799e^-4	0.862	UTR_3_PRIME tai DOWNSTREAM aust
2R	12957761	2R_12957761_SNP [dm3] 2R_17070256_SNP [dm6]	T	G	3.801e^-4	0.862	NON_SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad
X	4970581	X_4970581_SNP [dm3] X_5076548_SNP [dm6]	T	A	3.801e^-4	0.862	UTR_3_PRIME CG32767
3L	10515323	3L_10515323_SNP [dm3] 3L_10522223_SNP [dm6]	C	T	3.811e^-4	0.862	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14111487	2L_14111487_SNP [dm3] 2L_14111487_SNP [dm6]	T	C	3.811e^-4	0.862	UPSTREAM CG31769 INTERGENIC
3R	24866337	3R_24866337_SNP [dm3] 3R_29040615_SNP [dm6]	G	A	3.815e^-4	0.862	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11807120	2L_11807120_INS [dm3] 2L_11807120_INS [dm6]	A	AA	3.820e^-4	0.862	INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1672256	2L_1672256_SNP [dm3] 2L_1672256_SNP [dm6]	T	A	3.829e^-4	0.863	INTRON chinmo
2R	5212202	2R_5212202_SNP [dm3] 2R_9324697_SNP [dm6]	G	A	3.836e^-4	0.864	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18025314	3R_18025314_SNP [dm3] 3R_22199592_SNP [dm6]	G	A	3.842e^-4	0.864	INTRON SKIP & 1 other
3R	26581998	3R_26581998_SNP [dm3] 3R_30756276_SNP [dm6]	A	G	3.848e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18867028	3R_18867028_SNP [dm3] 3R_23041306_SNP [dm6]	C	T	3.851e^-4	0.864	UPSTREAM CG13838 EXON CR44226	TF binding site BDTNP1_TFBS_twi
2L	2396289	2L_2396289_SNP [dm3] 2L_2396289_SNP [dm6]	C	T	3.855e^-4	0.864	INTRON VGlut
2L	5500910	2L_5500910_SNP [dm3] 2L_5500910_SNP [dm6]	A	G	3.861e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12965697	2R_12965697_SNP [dm3] 2R_17078192_SNP [dm6]	A	G	3.869e^-4	0.864	INTRON CG30460	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	10405562	3R_10405562_SNP [dm3] 3R_14579840_SNP [dm6]	A	T	3.872e^-4	0.864	INTRON stumps	TF binding site mE1_TFBS_Trl
3R	27762356	3R_27762356_SNP [dm3] 3R_31936634_SNP [dm6]	C	A	3.878e^-4	0.864	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	13268530	2R_13268530_SNP [dm3] 2R_17381025_SNP [dm6]	G	C	3.880e^-4	0.864	INTERGENIC
3L	10225261	3L_10225261_SNP [dm3] 3L_10232161_SNP [dm6]	C	T	3.896e^-4	0.865	INTERGENIC
3L	10225269	3L_10225269_SNP [dm3] 3L_10232169_SNP [dm6]	G	T	3.896e^-4	0.865	INTERGENIC
3R	26524669	3R_26524669_SNP [dm3] 3R_30698947_SNP [dm6]	C	A	3.901e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9625049	X_9625049_SNP [dm3] X_9731016_SNP [dm6]	G	C	3.918e^-4	0.865	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23733585	3R_23733585_SNP [dm3] 3R_27907863_SNP [dm6]	C	A	3.936e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20511772	3L_20511772_SNP [dm3] 3L_20518672_SNP [dm6]	T	C	3.942e^-4	0.865	DOWNSTREAM mTerf3 INTRON CG5059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9938205	3R_9938205_SNP [dm3] 3R_14112483_SNP [dm6]	T	A	3.947e^-4	0.865	UTR_3_PRIME Kif19A UPSTREAM CG14357
3L	18563929	3L_18563929_SNP [dm3] 3L_18570829_SNP [dm6]	A	C	3.951e^-4	0.865	INTRON AstC-R1
2R	15820342	2R_15820342_SNP [dm3] 2R_19932837_SNP [dm6]	C	T	3.957e^-4	0.865	INTERGENIC
X	19429438	X_19429438_SNP [dm3] X_19535405_SNP [dm6]	T	C	3.971e^-4	0.865	INTRON CG32532
3R	18268924	3R_18268924_SNP [dm3] 3R_22443202_SNP [dm6]	A	G	3.974e^-4	0.865	SYNONYMOUS_CODING CG12499
2R	10171094	2R_10171094_SNP [dm3] 2R_14283589_SNP [dm6]	A	G	3.983e^-4	0.865	INTRON Ih
2L	17588827	2L_17588827_SNP [dm3] 2L_17588827_SNP [dm6]	G	T	3.984e^-4	0.865	UPSTREAM Oli & 1 other DOWNSTREAM CR44410 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20958880	X_20958880_SNP [dm3] X_21087853_SNP [dm6]	A	T	3.986e^-4	0.865	INTERGENIC
2R	10515414	2R_10515414_SNP [dm3] 2R_14627909_SNP [dm6]	A	G	3.987e^-4	0.865	INTERGENIC
3L	14376148	3L_14376148_SNP [dm3] 3L_14383048_SNP [dm6]	T	C	3.989e^-4	0.865	UTR_3_PRIME CG43120
3R	9860652	3R_9860652_SNP [dm3] 3R_14034930_SNP [dm6]	C	G	3.992e^-4	0.865	UTR_3_PRIME CG3061 DOWNSTREAM CG9922
2R	6399637	2R_6399637_SNP [dm3] 2R_10512132_SNP [dm6]	G	T	4.002e^-4	0.865	INTRON lola
3L	10225290	3L_10225290_SNP [dm3] 3L_10232190_SNP [dm6]	C	G	4.006e^-4	0.865	INTERGENIC
2L	7219444	2L_7219444_DEL [dm3] 2L_7219444_DEL [dm6]	CACAC	C	4.008e^-4	0.865	UTR_5_PRIME CG13784 DOWNSTREAM ico INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12926056	2R_12926056_SNP [dm3] 2R_17038551_SNP [dm6]	T	C	4.016e^-4	0.865	UPSTREAM CR45144 INTRON RhoGEF2
3L	18426656	3L_18426656_SNP [dm3] 3L_18433556_SNP [dm6]	G	C	4.019e^-4	0.865	INTERGENIC
3R	23145885	3R_23145885_SNP [dm3] 3R_27320163_SNP [dm6]	C	T	4.021e^-4	0.865	DOWNSTREAM CR44287 INTRON CG3339
3L	8913270	3L_8913270_DEL [dm3] 3L_8920170_DEL [dm6]	CTC	C	4.025e^-4	0.865	INTRON Tsp66E
3L	19618936	3L_19618936_SNP [dm3] 3L_19625836_SNP [dm6]	G	A	4.028e^-4	0.865	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_sens
2L	17518604	2L_17518604_SNP [dm3] 2L_17518604_SNP [dm6]	C	T	4.031e^-4	0.865	SYNONYMOUS_CODING Dhc36C
2L	5440821	2L_5440821_SNP [dm3] 2L_5440821_SNP [dm6]	T	A	4.041e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9920814	2R_9920814_SNP [dm3] 2R_14033309_SNP [dm6]	C	A	4.044e^-4	0.865	INTRON mam
2R	10595927	2R_10595927_DEL [dm3] 2R_14708422_DEL [dm6]	TT	T	4.044e^-4	0.865	INTRON mspo
3R	9922337	3R_9922337_SNP [dm3] 3R_14096615_SNP [dm6]	A	C	4.045e^-4	0.865	SYNONYMOUS_CODING CCHa1 DOWNSTREAM CG9920
3L	10705827	3L_10705827_DEL [dm3] 3L_10712727_DEL [dm6]	TTTCTA	T	4.047e^-4	0.865	INTERGENIC
3L	834113	3L_834113_SNP [dm3] 3L_834113_SNP [dm6]	C	T	4.050e^-4	0.865	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14080205	2L_14080205_SNP [dm3] 2L_14080205_SNP [dm6]	C	A	4.050e^-4	0.865	INTRON nAChRalpha5
2R	8372838	2R_8372838_SNP [dm3] 2R_12485333_SNP [dm6]	C	T	4.055e^-4	0.865	SYNONYMOUS_CODING Dh44-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17143910	3R_17143910_SNP [dm3] 3R_21318188_SNP [dm6]	C	A	4.056e^-4	0.865	DOWNSTREAM CG16791 & 1 other INTERGENIC
2R	11002073	2R_11002073_SNP [dm3] 2R_15114568_SNP [dm6]	C	A	4.059e^-4	0.865	UPSTREAM chn INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15191174	2L_15191174_SNP [dm3] 2L_15191174_SNP [dm6]	C	T	4.063e^-4	0.865	INTRON CG4168
2L	16104474	2L_16104474_SNP [dm3] 2L_16104474_SNP [dm6]	G	T	4.065e^-4	0.865	INTERGENIC
X	14433286	X_14433286_SNP [dm3] X_14539253_SNP [dm6]	C	A	4.067e^-4	0.865	INTERGENIC
2R	16861818	2R_16861818_SNP [dm3] 2R_20974313_SNP [dm6]	T	A	4.069e^-4	0.865	UPSTREAM CG15649 INTERGENIC
3R	16960366	3R_16960366_SNP [dm3] 3R_21134644_SNP [dm6]	C	T	4.075e^-4	0.865	SYNONYMOUS_CODING Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	1229659	3L_1229659_SNP [dm3] 3L_1229659_SNP [dm6]	G	A	4.080e^-4	0.865	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_chinmo
3L	1350805	3L_1350805_SNP [dm3] 3L_1350805_SNP [dm6]	T	A	4.106e^-4	0.865	UPSTREAM 312 & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	11245719	2R_11245719_SNP [dm3] 2R_15358214_SNP [dm6]	T	C	4.107e^-4	0.865	SYNONYMOUS_CODING unc-5	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	9407804	3R_9407804_SNP [dm3] 3R_13582082_SNP [dm6]	A	G	4.119e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20482078	2L_20482078_DEL [dm3] 2L_20482078_DEL [dm6]	CC	C	4.123e^-4	0.865	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10515467	3L_10515467_SNP [dm3] 3L_10522367_SNP [dm6]	A	C	4.129e^-4	0.865	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3932174	2L_3932174_SNP [dm3] 2L_3932174_SNP [dm6]	T	G	4.138e^-4	0.865	INTRON fred
3R	26830152	3R_26830152_SNP [dm3] 3R_31004430_SNP [dm6]	A	G	4.139e^-4	0.865	INTRON 5-HT7
3L	4147188	3L_4147188_SNP [dm3] 3L_4147188_SNP [dm6]	T	G	4.141e^-4	0.865	INTERGENIC
X	9910166	X_9910166_SNP [dm3] X_10016133_SNP [dm6]	G	C	4.146e^-4	0.865	UPSTREAM Cht6 INTERGENIC
3R	22732744	3R_22732744_SNP [dm3] 3R_26907022_SNP [dm6]	A	C	4.148e^-4	0.865	INTRON T48	regulatory region REDfly_CRMs
X	14197046	X_14197046_SNP [dm3] X_14303013_SNP [dm6]	A	G	4.149e^-4	0.865	INTERGENIC
2L	8845993	2L_8845993_SNP [dm3] 2L_8845993_SNP [dm6]	C	T	4.155e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14244844	2L_14244844_SNP [dm3] 2L_14244844_SNP [dm6]	T	G	4.156e^-4	0.865	INTERGENIC
2L	3811824	2L_3811824_SNP [dm3] 2L_3811824_SNP [dm6]	G	A	4.161e^-4	0.865	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	708567	3L_708567_SNP [dm3] 3L_708567_SNP [dm6]	G	A	4.161e^-4	0.865	UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	3602713	2R_3602713_SNP [dm3] 2R_7715208_SNP [dm6]	C	T	4.167e^-4	0.865	INTRON CG1946
2L	15283526	2L_15283526_SNP [dm3] 2L_15283526_SNP [dm6]	C	G	4.181e^-4	0.865	INTERGENIC
X	21901847	X_21901847_SNP [dm3] X_22500011_SNP [dm6]	T	C	4.183e^-4	0.865	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7103790	2L_7103790_SNP [dm3] 2L_7103790_SNP [dm6]	A	C	4.183e^-4	0.865	INTRON Pvf3
3L	15309636	3L_15309636_SNP [dm3] 3L_15316536_SNP [dm6]	G	A	4.189e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26581259	3R_26581259_SNP [dm3] 3R_30755537_SNP [dm6]	G	A	4.209e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11480593	2R_11480593_SNP [dm3] 2R_15593088_SNP [dm6]	T	C	4.214e^-4	0.865	INTERGENIC
2R	18703187	2R_18703187_SNP [dm3] 2R_22815682_SNP [dm6]	G	C	4.222e^-4	0.865	UPSTREAM CG30271 INTRON stl
2R	18703188	2R_18703188_SNP [dm3] 2R_22815683_SNP [dm6]	T	C	4.222e^-4	0.865	UPSTREAM CG30271 INTRON stl
2L	5561232	2L_5561232_SNP [dm3] 2L_5561232_SNP [dm6]	A	T	4.222e^-4	0.865	SYNONYMOUS_CODING GluRIIB
3R	18990339	3R_18990339_SNP [dm3] 3R_23164617_SNP [dm6]	A	C	4.232e^-4	0.865	INTERGENIC
3R	16039893	3R_16039893_SNP [dm3] 3R_20214171_SNP [dm6]	T	C	4.237e^-4	0.865	INTRON Nlg4
3L	10225308	3L_10225308_SNP [dm3] 3L_10232208_SNP [dm6]	C	T	4.245e^-4	0.865	INTERGENIC
3R	26647139	3R_26647139_SNP [dm3] 3R_30821417_SNP [dm6]	G	T	4.255e^-4	0.865	INTRON cindr	TF binding site BDTNP1_TFBS_z
3R	9861490	3R_9861490_SNP [dm3] 3R_14035768_SNP [dm6]	C	A	4.260e^-4	0.865	DOWNSTREAM CG3061 INTRON CG9922	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	15869288	3R_15869288_SNP [dm3] 3R_20043566_SNP [dm6]	C	G	4.266e^-4	0.865	INTRON CG17193 & 2 others
3L	15150563	3L_15150563_SNP [dm3] 3L_15157463_SNP [dm6]	G	A	4.274e^-4	0.865	INTRON Msh6	TF binding site mE1_TFBS_sens
3R	26480192	3R_26480192_SNP [dm3] 3R_30654470_SNP [dm6]	T	A	4.280e^-4	0.865	INTERGENIC
3L	14676329	3L_14676329_SNP [dm3] 3L_14683229_SNP [dm6]	G	T	4.280e^-4	0.865	INTRON ome
3R	7007647	3R_7007647_SNP [dm3] 3R_11181925_SNP [dm6]	C	G	4.286e^-4	0.865	INTERGENIC
X	10848525	X_10848525_SNP [dm3] X_10954492_SNP [dm6]	G	T	4.293e^-4	0.865	START_GAINED Myo10A UTR_5_PRIME Myo10A INTRON Myo10A
X	19437616	X_19437616_SNP [dm3] X_19543583_SNP [dm6]	C	T	4.320e^-4	0.865	INTRON CG32532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6756549	2R_6756549_INS [dm3] 2R_10869044_INS [dm6]	A	AAATACA	4.321e^-4	0.865	INTRON CG30015
3R	3051132	3R_3051132_SNP [dm3] 3R_7225410_SNP [dm6]	A	G	4.330e^-4	0.865	INTRON CG14608
3R	18363518	3R_18363518_SNP [dm3] 3R_22537796_SNP [dm6]	T	A	4.334e^-4	0.865	INTRON CG5326
2R	18863441	2R_18863441_SNP [dm3] 2R_22975918_SNP [dm6]	A	T	4.335e^-4	0.865	INTERGENIC
2L	8722537	2L_8722537_SNP [dm3] 2L_8722537_SNP [dm6]	C	G	4.340e^-4	0.865	INTRON raw
2L	5881398	2L_5881398_SNP [dm3] 2L_5881398_SNP [dm6]	G	T	4.346e^-4	0.865	INTERGENIC
3L	2713410	3L_2713410_SNP [dm3] 3L_2713410_SNP [dm6]	T	G	4.346e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16536721	X_16536721_SNP [dm3] X_16642688_SNP [dm6]	C	T	4.348e^-4	0.865	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16006309	3R_16006309_SNP [dm3] 3R_20180587_SNP [dm6]	G	T	4.360e^-4	0.865	INTERGENIC
2L	14244885	2L_14244885_SNP [dm3] 2L_14244885_SNP [dm6]	G	A	4.365e^-4	0.865	INTERGENIC
2L	18270670	2L_18270670_SNP [dm3] 2L_18270670_SNP [dm6]	A	C	4.369e^-4	0.865	INTRON CG42750
3L	15736850	3L_15736850_SNP [dm3] 3L_15743750_SNP [dm6]	C	A	4.374e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14334593	3R_14334593_SNP [dm3] 3R_18508871_SNP [dm6]	C	T	4.382e^-4	0.865	INTRON fru
2R	11879749	2R_11879749_SNP [dm3] 2R_15992244_SNP [dm6]	T	A	4.387e^-4	0.865	NON_SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	21688216	2L_21688216_SNP [dm3] 2L_21688216_SNP [dm6]	A	C	4.396e^-4	0.865	INTRON CG31619
X	7317163	X_7317163_SNP [dm3] X_7423130_SNP [dm6]	T	A	4.400e^-4	0.865	DOWNSTREAM CG9657 INTERGENIC
3R	12998657	3R_12998657_SNP [dm3] 3R_17172935_SNP [dm6]	T	A	4.404e^-4	0.865	INTRON Mur89F
3R	25130909	3R_25130909_SNP [dm3] 3R_29305187_SNP [dm6]	A	C	4.408e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25594269	3R_25594269_SNP [dm3] 3R_29768547_SNP [dm6]	T	A	4.410e^-4	0.865	INTRON kay
3R	14256844	3R_14256844_SNP [dm3] 3R_18431122_SNP [dm6]	T	C	4.411e^-4	0.865	DOWNSTREAM fru INTRON fru
3L	12898271	3L_12898271_SNP [dm3] 3L_12905171_SNP [dm6]	A	T	4.411e^-4	0.865	INTERGENIC
X	12499856	X_12499856_SNP [dm3] X_12605823_SNP [dm6]	A	T	4.411e^-4	0.865	SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3L	10907816	3L_10907816_INS [dm3] 3L_10914716_INS [dm6]	A	AA	4.416e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3488219	X_3488219_SNP [dm3] X_3594186_SNP [dm6]	G	A	4.419e^-4	0.865	INTRON AstA-R1
2R	19123860	2R_19123860_SNP [dm3] 2R_23236337_SNP [dm6]	T	C	4.421e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9920807	2R_9920807_SNP [dm3] 2R_14033302_SNP [dm6]	C	A	4.423e^-4	0.865	INTRON mam
2R	9920810	2R_9920810_SNP [dm3] 2R_14033305_SNP [dm6]	C	A	4.423e^-4	0.865	INTRON mam
X	13996334	X_13996334_SNP [dm3] X_14102301_SNP [dm6]	C	A	4.424e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3051965	2R_3051965_SNP [dm3] 2R_7164460_SNP [dm6]	G	T	4.430e^-4	0.865	INTRON pk
3R	13012735	3R_13012735_SNP [dm3] 3R_17187013_SNP [dm6]	A	G	4.451e^-4	0.865	INTRON Mur89F
2L	14215605	2L_14215605_SNP [dm3] 2L_14215605_SNP [dm6]	C	T	4.452e^-4	0.865	INTRON Dyrk2
3R	12996226	3R_12996226_SNP [dm3] 3R_17170504_SNP [dm6]	T	A	4.454e^-4	0.865	INTRON Mur89F
3L	830013	3L_830013_DEL [dm3] 3L_830013_DEL [dm6]	TAT	T	4.472e^-4	0.865	UPSTREAM CR45184 & 1 other DOWNSTREAM snoRNA:Me28S-A771 INTRON CG13900 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9042253	2L_9042253_SNP [dm3] 2L_9042253_SNP [dm6]	T	C	4.478e^-4	0.865	INTERGENIC
2L	3306973	2L_3306973_SNP [dm3] 2L_3306973_SNP [dm6]	A	G	4.487e^-4	0.865	INTRON CG3277
3R	14334604	3R_14334604_SNP [dm3] 3R_18508882_SNP [dm6]	G	A	4.493e^-4	0.865	INTRON fru
3L	7450423	3L_7450423_SNP [dm3] 3L_7457323_SNP [dm6]	C	T	4.495e^-4	0.865	SYNONYMOUS_CODING ppk26
3R	15892579	3R_15892579_SNP [dm3] 3R_20066857_SNP [dm6]	A	G	4.495e^-4	0.865	INTERGENIC
3R	20343544	3R_20343544_SNP [dm3] 3R_24517822_SNP [dm6]	G	A	4.495e^-4	0.865	NON_SYNONYMOUS_CODING CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4512144	3L_4512144_SNP [dm3] 3L_4512144_SNP [dm6]	T	C	4.499e^-4	0.865	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14244874	2L_14244874_SNP [dm3] 2L_14244874_SNP [dm6]	A	T	4.503e^-4	0.865	INTERGENIC
X	8934802	X_8934802_SNP [dm3] X_9040769_SNP [dm6]	G	C	4.506e^-4	0.865	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
3R	22732523	3R_22732523_INS [dm3] 3R_26906801_INS [dm6]	G	GG	4.507e^-4	0.865	INTRON T48	regulatory region REDfly_CRMs
3L	6250580	3L_6250580_DEL [dm3] 3L_6257480_DEL [dm6]	AA	A	4.509e^-4	0.865	UTR_3_PRIME CG10163 UPSTREAM Best2	TF binding site mE1_TFBS_HSA
3L	10515669	3L_10515669_SNP [dm3] 3L_10522569_SNP [dm6]	T	G	4.511e^-4	0.865	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3195442	2R_3195442_SNP [dm3] 2R_7307937_SNP [dm6]	A	T	4.512e^-4	0.865	INTERGENIC
3L	8172284	3L_8172284_SNP [dm3] 3L_8179184_SNP [dm6]	C	T	4.513e^-4	0.865	SYNONYMOUS_CODING mthl7 UPSTREAM Nmt
3R	24567514	3R_24567514_SNP [dm3] 3R_28741792_SNP [dm6]	G	C	4.514e^-4	0.865	INTRON AstA-R2
3L	958606	3L_958606_SNP [dm3] 3L_958606_SNP [dm6]	C	T	4.519e^-4	0.865	INTRON Glut1	TF binding site mE1_TFBS_Trl
2R	19111583	2R_19111583_SNP [dm3] 2R_23224060_SNP [dm6]	G	A	4.524e^-4	0.865	INTERGENIC
X	19652289	X_19652289_SNP [dm3] X_19758256_SNP [dm6]	C	T	4.526e^-4	0.865	SYNONYMOUS_CODING Pmp70 DOWNSTREAM CG12702	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13269028	2R_13269028_SNP [dm3] 2R_17381523_SNP [dm6]	A	G	4.532e^-4	0.865	INTERGENIC
3R	10655672	3R_10655672_SNP [dm3] 3R_14829950_SNP [dm6]	G	T	4.534e^-4	0.865	INTRON btsz
2L	20026017	2L_20026017_SNP [dm3] 2L_20026017_SNP [dm6]	G	A	4.537e^-4	0.865	UPSTREAM CG10659 INTERGENIC	transposable element FlyBase
3R	26068952	3R_26068952_SNP [dm3] 3R_30243230_SNP [dm6]	C	A	4.543e^-4	0.865	UTR_5_PRIME CG9737 DOWNSTREAM CG9733
2L	11573570	2L_11573570_SNP [dm3] 2L_11573570_SNP [dm6]	T	C	4.550e^-4	0.865	INTERGENIC
3R	8160839	3R_8160839_SNP [dm3] 3R_12335117_SNP [dm6]	A	C	4.556e^-4	0.865	UPSTREAM CR44941 INTERGENIC
3R	1931107	3R_1931107_SNP [dm3] 3R_6105385_SNP [dm6]	T	C	4.565e^-4	0.865	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
3L	18165584	3L_18165584_SNP [dm3] 3L_18172484_SNP [dm6]	A	G	4.572e^-4	0.865	INTRON W
3R	19612731	3R_19612731_SNP [dm3] 3R_23787009_SNP [dm6]	G	A	4.575e^-4	0.865	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12425888	2R_12425888_SNP [dm3] 2R_16538383_SNP [dm6]	C	T	4.579e^-4	0.865	INTERGENIC
2R	12425902	2R_12425902_SNP [dm3] 2R_16538397_SNP [dm6]	T	C	4.579e^-4	0.865	INTERGENIC
2L	6582468	2L_6582468_DEL [dm3] 2L_6582468_DEL [dm6]	AA	A	4.579e^-4	0.865	INTRON CG11319
3R	18498074	3R_18498074_SNP [dm3] 3R_22672352_SNP [dm6]	T	A	4.580e^-4	0.865	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14245031	2L_14245031_SNP [dm3] 2L_14245031_SNP [dm6]	G	A	4.584e^-4	0.865	INTERGENIC
3L	7032347	3L_7032347_INS [dm3] 3L_7039247_INS [dm6]	T	TCATC	4.585e^-4	0.865	INTRON Mp	TF binding site BDTNP1_TFBS_twi
3L	7032350	3L_7032350_INS [dm3] 3L_7039250_INS [dm6]	G	CTGTATCA	4.585e^-4	0.865	INTRON Mp	TF binding site BDTNP1_TFBS_twi
3L	7032352	3L_7032352_SNP [dm3] 3L_7039252_SNP [dm6]	A	C	4.585e^-4	0.865	INTRON Mp	TF binding site BDTNP1_TFBS_twi
3R	8834442	3R_8834442_SNP [dm3] 3R_13008720_SNP [dm6]	A	G	4.587e^-4	0.865	SYNONYMOUS_CODING CG8031 DOWNSTREAM CG7518
3L	13833196	3L_13833196_SNP [dm3] 3L_13840096_SNP [dm6]	A	G	4.591e^-4	0.865	DOWNSTREAM CG8757 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9840355	2L_9840355_SNP [dm3] 2L_9840355_SNP [dm6]	T	A	4.591e^-4	0.865	INTRON nAChRalpha6
3L	19620899	3L_19620899_SNP [dm3] 3L_19627799_SNP [dm6]	A	G	4.592e^-4	0.865	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12734460	3L_12734460_SNP [dm3] 3L_12741360_SNP [dm6]	T	C	4.607e^-4	0.865	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3L	20892713	3L_20892713_SNP [dm3] 3L_20899613_SNP [dm6]	G	A	4.607e^-4	0.865	INTERGENIC
3R	15073874	3R_15073874_SNP [dm3] 3R_19248152_SNP [dm6]	T	C	4.611e^-4	0.865	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2L	18271050	2L_18271050_SNP [dm3] 2L_18271050_SNP [dm6]	C	A	4.622e^-4	0.865	UTR_5_PRIME CG42750
2R	8344017	2R_8344017_SNP [dm3] 2R_12456512_SNP [dm6]	T	G	4.628e^-4	0.865	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9122860	2L_9122860_SNP [dm3] 2L_9122860_SNP [dm6]	G	T	4.632e^-4	0.865	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20125452	2R_20125452_SNP [dm3] 2R_24237929_SNP [dm6]	C	G	4.635e^-4	0.865	EXON CR44827

By genomic position
Variant impact
Gene name

Rhythmicity_Index phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results