DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.372e^-19)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.7956	0.0909

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2354 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15868632	2L_15868632_SNP [dm3] 2L_15868632_SNP [dm6]	G	A	4.458e^-7	0.424	INTERGENIC
3L	10865777	3L_10865777_SNP [dm3] 3L_10872677_SNP [dm6]	C	A	5.602e^-7	0.424	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	15868484	2L_15868484_SNP [dm3] 2L_15868484_SNP [dm6]	C	T	1.205e^-6	0.424	INTERGENIC
3L	19411763	3L_19411763_SNP [dm3] 3L_19418663_SNP [dm6]	T	A	1.585e^-6	0.424	INTERGENIC
3L	8910786	3L_8910786_SNP [dm3] 3L_8917686_SNP [dm6]	T	C	2.150e^-6	0.424	INTRON Tsp66E
3L	11808274	3L_11808274_SNP [dm3] 3L_11815174_SNP [dm6]	T	A	2.173e^-6	0.424	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8910787	3L_8910787_SNP [dm3] 3L_8917687_SNP [dm6]	C	A	2.291e^-6	0.424	INTRON Tsp66E
X	18409042	X_18409042_DEL [dm3] X_18515009_DEL [dm6]	TTG	T	2.412e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	18409039	X_18409039_SNP [dm3] X_18515006_SNP [dm6]	G	C	2.715e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	18408998	X_18408998_MNP [dm3] X_18514965_MNP [dm6]	AACAACA	GTGTTGT	2.976e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	11808270	3L_11808270_SNP [dm3] 3L_11815170_SNP [dm6]	C	T	3.188e^-6	0.424	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18409038	X_18409038_SNP [dm3] X_18515005_SNP [dm6]	G	A	3.226e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8910839	3L_8910839_SNP [dm3] 3L_8917739_SNP [dm6]	A	G	3.315e^-6	0.424	INTRON Tsp66E
X	18409115	X_18409115_SNP [dm3] X_18515082_SNP [dm6]	T	G	3.638e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	12258899	X_12258899_SNP [dm3] X_12364866_SNP [dm6]	T	G	3.768e^-6	0.424	INTERGENIC
2L	9851664	2L_9851664_SNP [dm3] 2L_9851664_SNP [dm6]	C	T	3.789e^-6	0.424	INTRON nAChRalpha6
X	18409101	X_18409101_SNP [dm3] X_18515068_SNP [dm6]	G	T	3.842e^-6	0.424	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	15868585	2L_15868585_SNP [dm3] 2L_15868585_SNP [dm6]	G	A	4.286e^-6	0.447	INTERGENIC
2L	15852844	2L_15852844_SNP [dm3] 2L_15852844_SNP [dm6]	C	T	5.169e^-6	0.51	SYNONYMOUS_CODING CG13243
2L	15848700	2L_15848700_DEL [dm3] 2L_15848700_DEL [dm6]	AC	T	5.654e^-6	0.53	INTERGENIC
3L	11808271	3L_11808271_SNP [dm3] 3L_11815171_SNP [dm6]	C	T	6.080e^-6	0.543	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15858972	2L_15858972_SNP [dm3] 2L_15858972_SNP [dm6]	G	A	7.147e^-6	0.577	INTERGENIC
3R	27125958	3R_27125958_SNP [dm3] 3R_31300236_SNP [dm6]	T	A	7.270e^-6	0.577	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10873886	3R_10873886_SNP [dm3] 3R_15048164_SNP [dm6]	G	C	7.379e^-6	0.577	INTERGENIC
2L	15848186	2L_15848186_SNP [dm3] 2L_15848186_SNP [dm6]	T	C	8.983e^-6	0.645	DOWNSTREAM CR43763 INTERGENIC
3L	11074312	3L_11074312_SNP [dm3] 3L_11081212_SNP [dm6]	G	T	8.997e^-6	0.645	NON_SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22275244	2L_22275244_SNP [dm3] 2L_22275244_SNP [dm6]	A	G	9.805e^-6	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
X	7116824	X_7116824_SNP [dm3] X_7222791_SNP [dm6]	T	G	1.055e^-5	0.645	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5511220	3L_5511220_SNP [dm3] 3L_5518120_SNP [dm6]	G	T	1.125e^-5	0.645	INTRON Lkr
X	20929376	X_20929376_SNP [dm3] X_21058349_SNP [dm6]	T	A	1.188e^-5	0.645	INTRON bves
3L	10725362	3L_10725362_SNP [dm3] 3L_10732262_SNP [dm6]	C	T	1.224e^-5	0.645	INTERGENIC
3L	8911051	3L_8911051_SNP [dm3] 3L_8917951_SNP [dm6]	C	T	1.244e^-5	0.645	INTRON Tsp66E
X	7116803	X_7116803_SNP [dm3] X_7222770_SNP [dm6]	C	G	1.311e^-5	0.645	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20928640	X_20928640_SNP [dm3] X_21057613_SNP [dm6]	T	C	1.387e^-5	0.645	INTRON bves	TF binding site BDTNP1_TFBS_dl
2L	11185403	2L_11185403_SNP [dm3] 2L_11185403_SNP [dm6]	G	A	1.532e^-5	0.645	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd
2L	15863502	2L_15863502_SNP [dm3] 2L_15863502_SNP [dm6]	C	T	1.545e^-5	0.645	EXON CR42791
2L	20134973	2L_20134973_SNP [dm3] 2L_20134973_SNP [dm6]	A	G	1.589e^-5	0.645	UPSTREAM CG10651 INTERGENIC
3R	16055981	3R_16055981_SNP [dm3] 3R_20230259_SNP [dm6]	C	A	1.632e^-5	0.645	INTRON Nlg4
2L	15858973	2L_15858973_SNP [dm3] 2L_15858973_SNP [dm6]	A	T	1.633e^-5	0.645	INTERGENIC
X	20926285	X_20926285_SNP [dm3] X_21055258_SNP [dm6]	G	A	1.660e^-5	0.645	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9016270	2L_9016270_DEL [dm3] 2L_9016270_DEL [dm6]	GACCCTTCTATG...	G	1.667e^-5	0.645	INTERGENIC
3L	11079613	3L_11079613_SNP [dm3] 3L_11086513_SNP [dm6]	A	C	1.673e^-5	0.645	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6841299	2L_6841299_SNP [dm3] 2L_6841299_SNP [dm6]	G	A	1.682e^-5	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	18780182	2R_18780182_SNP [dm3] 2R_22892659_SNP [dm6]	T	C	1.684e^-5	0.645	INTRON MED23
X	18409010	X_18409010_SNP [dm3] X_18514977_SNP [dm6]	A	C	1.695e^-5	0.645	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	9861518	3R_9861518_INS [dm3] 3R_14035796_INS [dm6]	A	ATGGATTGATTG...	1.697e^-5	0.645	DOWNSTREAM CG3061 INTRON CG9922	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	15863567	2L_15863567_SNP [dm3] 2L_15863567_SNP [dm6]	C	G	1.705e^-5	0.645	EXON CR42791
2R	19299824	2R_19299824_SNP [dm3] 2R_23412301_SNP [dm6]	A	T	1.766e^-5	0.645	DOWNSTREAM CG9812 INTERGENIC
3L	19411530	3L_19411530_SNP [dm3] 3L_19418430_SNP [dm6]	T	C	1.774e^-5	0.645	INTERGENIC
3R	18756361	3R_18756361_SNP [dm3] 3R_22930639_SNP [dm6]	A	C	1.792e^-5	0.645	INTRON klg
3L	11808683	3L_11808683_SNP [dm3] 3L_11815583_SNP [dm6]	T	C	1.796e^-5	0.645	UPSTREAM CG42255 INTRON CG14130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11808401	3L_11808401_SNP [dm3] 3L_11815301_SNP [dm6]	A	G	1.807e^-5	0.645	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	10170006	2L_10170006_SNP [dm3] 2L_10170006_SNP [dm6]	A	G	1.822e^-5	0.645	INTRON CG44153
2L	15868973	2L_15868973_SNP [dm3] 2L_15868973_SNP [dm6]	G	A	1.905e^-5	0.661	INTERGENIC
2L	19584581	2L_19584581_SNP [dm3] 2L_19584581_SNP [dm6]	T	C	1.975e^-5	0.669	UPSTREAM CG10262 INTRON CG10366	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10520479	3L_10520479_INS [dm3] 3L_10527379_INS [dm6]	A	AA	2.004e^-5	0.669	INTRON A2bp1
X	20929367	X_20929367_INS [dm3] X_21058340_INS [dm6]	T	TCGT	2.044e^-5	0.669	INTRON bves
3L	8910913	3L_8910913_INS [dm3] 3L_8917813_INS [dm6]	C	ATA	2.107e^-5	0.669	INTRON Tsp66E
2R	16803454	2R_16803454_SNP [dm3] 2R_20915949_SNP [dm6]	A	T	2.233e^-5	0.669	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	16803466	2R_16803466_SNP [dm3] 2R_20915961_SNP [dm6]	T	C	2.233e^-5	0.669	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	10528117	3R_10528117_SNP [dm3] 3R_14702395_SNP [dm6]	A	T	2.235e^-5	0.669	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	20928932	X_20928932_SNP [dm3] X_21057905_SNP [dm6]	C	T	2.263e^-5	0.669	INTRON bves
2R	18321312	2R_18321312_SNP [dm3] 2R_22433807_SNP [dm6]	G	T	2.335e^-5	0.669	INTERGENIC
3L	11082238	3L_11082238_SNP [dm3] 3L_11089138_SNP [dm6]	T	A	2.416e^-5	0.669	INTRON JIL-1
2R	17510699	2R_17510699_SNP [dm3] 2R_21623194_SNP [dm6]	T	C	2.476e^-5	0.669	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14119438	3L_14119438_SNP [dm3] 3L_14126338_SNP [dm6]	G	A	2.490e^-5	0.669	INTRON Sox21b
3L	10520224	3L_10520224_SNP [dm3] 3L_10527124_SNP [dm6]	T	C	2.499e^-5	0.669	INTRON A2bp1
3L	10520187	3L_10520187_SNP [dm3] 3L_10527087_SNP [dm6]	C	G	2.551e^-5	0.669	INTRON A2bp1
3R	10528383	3R_10528383_SNP [dm3] 3R_14702661_SNP [dm6]	T	A	2.620e^-5	0.669	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	18109385	2L_18109385_SNP [dm3] 2L_18109385_SNP [dm6]	C	G	2.769e^-5	0.669	INTERGENIC
3R	25425280	3R_25425280_SNP [dm3] 3R_29599558_SNP [dm6]	T	C	2.868e^-5	0.669	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3R	23358836	3R_23358836_SNP [dm3] 3R_27533114_SNP [dm6]	C	A	2.901e^-5	0.669	SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
X	12258832	X_12258832_SNP [dm3] X_12364799_SNP [dm6]	T	C	2.968e^-5	0.669	INTERGENIC
X	20929227	X_20929227_SNP [dm3] X_21058200_SNP [dm6]	C	T	2.982e^-5	0.669	INTRON bves
2R	18317473	2R_18317473_SNP [dm3] 2R_22429968_SNP [dm6]	G	C	2.986e^-5	0.669	DOWNSTREAM ppk12 INTERGENIC
3R	13800577	3R_13800577_SNP [dm3] 3R_17974855_SNP [dm6]	C	T	3.015e^-5	0.669	INTRON cpo
2L	18113256	2L_18113256_SNP [dm3] 2L_18113256_SNP [dm6]	T	C	3.066e^-5	0.669	UPSTREAM CG44476 INTERGENIC
2R	14048701	2R_14048701_SNP [dm3] 2R_18161196_SNP [dm6]	C	T	3.100e^-5	0.669	SYNONYMOUS_CODING CG10915 DOWNSTREAM CG10914	TF binding site mE1_TFBS_sens
3R	10599631	3R_10599631_SNP [dm3] 3R_14773909_SNP [dm6]	G	T	3.121e^-5	0.669	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11082239	3L_11082239_SNP [dm3] 3L_11089139_SNP [dm6]	T	A	3.133e^-5	0.669	INTRON JIL-1
3R	10412466	3R_10412466_SNP [dm3] 3R_14586744_SNP [dm6]	T	G	3.150e^-5	0.669	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15491269	2R_15491269_SNP [dm3] 2R_19603764_SNP [dm6]	A	C	3.178e^-5	0.669	DOWNSTREAM CR44474 INTRON sm EXON CR44473
2R	17510714	2R_17510714_SNP [dm3] 2R_21623209_SNP [dm6]	A	G	3.201e^-5	0.669	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11074191	3L_11074191_SNP [dm3] 3L_11081091_SNP [dm6]	A	T	3.235e^-5	0.669	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20929222	X_20929222_SNP [dm3] X_21058195_SNP [dm6]	C	T	3.264e^-5	0.669	INTRON bves
2L	9851618	2L_9851618_SNP [dm3] 2L_9851618_SNP [dm6]	C	T	3.269e^-5	0.669	INTRON nAChRalpha6
3L	1167052	3L_1167052_SNP [dm3] 3L_1167052_SNP [dm6]	A	T	3.312e^-5	0.669	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11799195	2R_11799195_SNP [dm3] 2R_15911690_SNP [dm6]	G	C	3.334e^-5	0.669	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21008377	X_21008377_SNP [dm3] X_21137350_SNP [dm6]	C	T	3.335e^-5	0.669	SYNONYMOUS_CODING CG34120
3L	11303009	3L_11303009_SNP [dm3] 3L_11309909_SNP [dm6]	A	G	3.387e^-5	0.669	INTERGENIC
3R	14063330	3R_14063330_SNP [dm3] 3R_18237608_SNP [dm6]	A	T	3.393e^-5	0.669	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10543178	3R_10543178_SNP [dm3] 3R_14717456_SNP [dm6]	T	C	3.403e^-5	0.669	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11835317	X_11835317_SNP [dm3] X_11941284_SNP [dm6]	A	G	3.452e^-5	0.669	INTRON cac
2L	10202491	2L_10202491_SNP [dm3] 2L_10202491_SNP [dm6]	A	G	3.483e^-5	0.669	DOWNSTREAM CG34159 & 1 other INTERGENIC
3L	11303021	3L_11303021_SNP [dm3] 3L_11309921_SNP [dm6]	A	C	3.485e^-5	0.669	INTERGENIC
3L	8808862	3L_8808862_DEL [dm3] 3L_8815762_DEL [dm6]	AA	A	3.516e^-5	0.669	INTERGENIC
2L	15867656	2L_15867656_SNP [dm3] 2L_15867656_SNP [dm6]	C	T	3.572e^-5	0.669	INTERGENIC
2R	16727942	2R_16727942_SNP [dm3] 2R_20840437_SNP [dm6]	A	T	3.580e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
3L	10755625	3L_10755625_SNP [dm3] 3L_10762525_SNP [dm6]	T	A	3.596e^-5	0.669	INTERGENIC
3L	24226503	3L_24226503_DEL [dm3] 3L_24233403_DEL [dm6]	TTTTTCTATATTATTTAATT...	T	3.612e^-5	0.669	INTRON Snap25
X	21280598	X_21280598_SNP [dm3] X_21409571_SNP [dm6]	A	G	3.622e^-5	0.669	EXON CR45003
2R	16803316	2R_16803316_SNP [dm3] 2R_20915811_SNP [dm6]	G	A	3.697e^-5	0.669	UPSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	20301642	3R_20301642_SNP [dm3] 3R_24475920_SNP [dm6]	A	T	3.699e^-5	0.669	INTERGENIC
2L	14452593	2L_14452593_SNP [dm3] 2L_14452593_SNP [dm6]	A	T	3.751e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15868793	2L_15868793_SNP [dm3] 2L_15868793_SNP [dm6]	C	T	3.915e^-5	0.669	INTERGENIC
3R	13800917	3R_13800917_SNP [dm3] 3R_17975195_SNP [dm6]	C	T	3.942e^-5	0.669	INTRON cpo
3L	11808335	3L_11808335_SNP [dm3] 3L_11815235_SNP [dm6]	C	A	3.966e^-5	0.669	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	8384906	3L_8384906_SNP [dm3] 3L_8391806_SNP [dm6]	A	C	3.993e^-5	0.669	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11083318	3L_11083318_SNP [dm3] 3L_11090218_SNP [dm6]	A	T	4.013e^-5	0.669	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18323722	2L_18323722_SNP [dm3] 2L_18323722_SNP [dm6]	T	A	4.021e^-5	0.669	INTRON Fas3
3L	10755552	3L_10755552_SNP [dm3] 3L_10762452_SNP [dm6]	C	G	4.130e^-5	0.669	INTERGENIC
3L	12863199	3L_12863199_SNP [dm3] 3L_12870099_SNP [dm6]	A	G	4.146e^-5	0.669	INTERGENIC
3L	24204659	3L_24204659_SNP [dm3] 3L_24211559_SNP [dm6]	C	A	4.172e^-5	0.669	INTRON Snap25	TF binding site mE1_TFBS_inv
2L	14396680	2L_14396680_DEL [dm3] 2L_14396680_DEL [dm6]	ACGTAAGTTGGTAAGAGACA...	A	4.227e^-5	0.669	INTRON elB
3R	9038169	3R_9038169_SNP [dm3] 3R_13212447_SNP [dm6]	G	T	4.232e^-5	0.669	INTRON CG8483
3L	7206186	3L_7206186_SNP [dm3] 3L_7213086_SNP [dm6]	A	G	4.251e^-5	0.669	INTERGENIC
3L	8470875	3L_8470875_SNP [dm3] 3L_8477775_SNP [dm6]	A	T	4.282e^-5	0.669	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15919446	2L_15919446_SNP [dm3] 2L_15919446_SNP [dm6]	A	C	4.288e^-5	0.669	INTRON beat-Ib
2R	14453612	2R_14453612_SNP [dm3] 2R_18566107_SNP [dm6]	A	G	4.351e^-5	0.669	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16980668	2L_16980668_DEL [dm3] 2L_16980668_DEL [dm6]	AT	A	4.439e^-5	0.669	INTRON beat-IIIb
3L	11082617	3L_11082617_SNP [dm3] 3L_11089517_SNP [dm6]	T	C	4.455e^-5	0.669	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4780830	3R_4780830_SNP [dm3] 3R_8955108_SNP [dm6]	T	C	4.540e^-5	0.669	INTRON CG11966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10310712	3R_10310712_SNP [dm3] 3R_14484990_SNP [dm6]	G	A	4.553e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18323728	2L_18323728_SNP [dm3] 2L_18323728_SNP [dm6]	C	T	4.565e^-5	0.669	INTRON Fas3
2L	20134933	2L_20134933_SNP [dm3] 2L_20134933_SNP [dm6]	A	G	4.590e^-5	0.669	UPSTREAM CG10651 INTERGENIC
2L	15868490	2L_15868490_SNP [dm3] 2L_15868490_SNP [dm6]	C	T	4.625e^-5	0.669	INTERGENIC
2L	19471446	2L_19471446_SNP [dm3] 2L_19471446_SNP [dm6]	C	T	4.631e^-5	0.669	UPSTREAM CR45723 EXON CR43839
2L	15927698	2L_15927698_SNP [dm3] 2L_15927698_SNP [dm6]	A	C	4.696e^-5	0.669	INTRON beat-Ib
3L	15057982	3L_15057982_SNP [dm3] 3L_15064882_SNP [dm6]	A	C	4.716e^-5	0.669	UTR_5_PRIME Sytbeta
3R	10337837	3R_10337837_SNP [dm3] 3R_14512115_SNP [dm6]	A	G	4.772e^-5	0.669	SPLICE_SITE_REGION mRpL11 UPSTREAM HtrA2 DOWNSTREAM CG8461 INTRON mRpL11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25427618	3R_25427618_DEL [dm3] 3R_29601896_DEL [dm6]	TACTGGGGATGTGGGTGCCA...	T	4.784e^-5	0.669	INTRON alph
2L	14208686	2L_14208686_DEL [dm3] 2L_14208686_DEL [dm6]	ACA	A	4.789e^-5	0.669	INTRON Dyrk2
3L	1167053	3L_1167053_SNP [dm3] 3L_1167053_SNP [dm6]	C	T	4.807e^-5	0.669	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25427906	3R_25427906_SNP [dm3] 3R_29602184_SNP [dm6]	C	G	4.832e^-5	0.669	INTRON alph
3R	25427877	3R_25427877_SNP [dm3] 3R_29602155_SNP [dm6]	C	G	4.837e^-5	0.669	INTRON alph
3L	11808368	3L_11808368_SNP [dm3] 3L_11815268_SNP [dm6]	G	A	4.857e^-5	0.669	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	15868832	2L_15868832_INS [dm3] 2L_15868832_INS [dm6]	A	AGCTTTCGAACAAAA...	4.887e^-5	0.669	INTERGENIC
2L	15463455	2L_15463455_SNP [dm3] 2L_15463455_SNP [dm6]	C	A	4.962e^-5	0.671	EXON CR44863
2R	18303260	2R_18303260_SNP [dm3] 2R_22415755_SNP [dm6]	C	G	5.083e^-5	0.671	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	15863935	2L_15863935_SNP [dm3] 2L_15863935_SNP [dm6]	T	G	5.084e^-5	0.671	DOWNSTREAM CR42791 & 1 other INTERGENIC
2L	15858733	2L_15858733_SNP [dm3] 2L_15858733_SNP [dm6]	G	T	5.104e^-5	0.671	INTERGENIC
3L	11170007	3L_11170007_DEL [dm3] 3L_11176907_DEL [dm6]	AA	A	5.117e^-5	0.671	DOWNSTREAM GlcAT-P & 1 other INTERGENIC
2L	15422037	2L_15422037_SNP [dm3] 2L_15422037_SNP [dm6]	C	T	5.143e^-5	0.671	INTERGENIC
3L	10755472	3L_10755472_DEL [dm3] 3L_10762372_DEL [dm6]	ATA	A	5.154e^-5	0.671	INTERGENIC
3R	25425100	3R_25425100_SNP [dm3] 3R_29599378_SNP [dm6]	C	T	5.188e^-5	0.671	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
2L	15868865	2L_15868865_INS [dm3] 2L_15868865_INS [dm6]	C	CTTGACCCTGGGTAAAAGTC...	5.256e^-5	0.671	INTERGENIC
3R	18195970	3R_18195970_SNP [dm3] 3R_22370248_SNP [dm6]	A	C	5.260e^-5	0.671	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1983171	3L_1983171_SNP [dm3] 3L_1983171_SNP [dm6]	G	A	5.312e^-5	0.673	INTERGENIC
2R	16803408	2R_16803408_SNP [dm3] 2R_20915903_SNP [dm6]	T	C	5.354e^-5	0.674	UPSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
3L	5272797	3L_5272797_SNP [dm3] 3L_5279697_SNP [dm6]	T	C	5.458e^-5	0.678	INTERGENIC
2L	9851628	2L_9851628_SNP [dm3] 2L_9851628_SNP [dm6]	T	A	5.460e^-5	0.678	INTRON nAChRalpha6
2L	19471435	2L_19471435_SNP [dm3] 2L_19471435_SNP [dm6]	A	G	5.576e^-5	0.688	UPSTREAM CR45723 EXON CR43839
3R	13797375	3R_13797375_SNP [dm3] 3R_17971653_SNP [dm6]	A	G	5.645e^-5	0.69	INTRON cpo
X	7638314	X_7638314_SNP [dm3] X_7744281_SNP [dm6]	T	C	5.664e^-5	0.69	INTERGENIC
2L	15868540	2L_15868540_SNP [dm3] 2L_15868540_SNP [dm6]	A	T	5.699e^-5	0.69	INTERGENIC
3L	14148564	3L_14148564_SNP [dm3] 3L_14155464_SNP [dm6]	A	G	5.770e^-5	0.691	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	7122894	2R_7122894_SNP [dm3] 2R_11235389_SNP [dm6]	A	G	5.836e^-5	0.691	NON_SYNONYMOUS_CODING CG13227 UPSTREAM CG34223 DOWNSTREAM CG13228 & 1 other	TF binding site mE1_TFBS_chinmo
3R	25427761	3R_25427761_SNP [dm3] 3R_29602039_SNP [dm6]	A	T	5.866e^-5	0.691	INTRON alph
3L	19413144	3L_19413144_SNP [dm3] 3L_19420044_SNP [dm6]	A	C	6.010e^-5	0.691	INTERGENIC
2L	18130942	2L_18130942_SNP [dm3] 2L_18130942_SNP [dm6]	T	C	6.034e^-5	0.691	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2R	12234697	2R_12234697_SNP [dm3] 2R_16347192_SNP [dm6]	T	A	6.064e^-5	0.691	SYNONYMOUS_CODING wcd DOWNSTREAM CG15710	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10755550	3L_10755550_SNP [dm3] 3L_10762450_SNP [dm6]	A	G	6.067e^-5	0.691	INTERGENIC
3R	25427816	3R_25427816_SNP [dm3] 3R_29602094_SNP [dm6]	G	A	6.101e^-5	0.691	INTRON alph
2R	18317388	2R_18317388_DEL [dm3] 2R_22429883_DEL [dm6]	TTGAAC	T	6.103e^-5	0.691	DOWNSTREAM ppk12 INTERGENIC
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	6.151e^-5	0.691	DOWNSTREAM aPKC INTRON CG10257
2L	15867689	2L_15867689_SNP [dm3] 2L_15867689_SNP [dm6]	T	C	6.162e^-5	0.691	INTERGENIC
2L	10176749	2L_10176749_SNP [dm3] 2L_10176749_SNP [dm6]	G	T	6.180e^-5	0.691	INTRON CG44153
3R	17015392	3R_17015392_SNP [dm3] 3R_21189670_SNP [dm6]	A	C	6.194e^-5	0.691	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20928834	X_20928834_SNP [dm3] X_21057807_SNP [dm6]	G	T	6.329e^-5	0.696	INTRON bves	TF binding site BDTNP1_TFBS_dl
3R	20301629	3R_20301629_SNP [dm3] 3R_24475907_SNP [dm6]	T	G	6.339e^-5	0.696	INTERGENIC
2L	15868699	2L_15868699_SNP [dm3] 2L_15868699_SNP [dm6]	C	T	6.368e^-5	0.696	INTERGENIC
3L	10755533	3L_10755533_SNP [dm3] 3L_10762433_SNP [dm6]	A	C	6.440e^-5	0.696	INTERGENIC
3L	11303036	3L_11303036_SNP [dm3] 3L_11309936_SNP [dm6]	T	A	6.467e^-5	0.696	INTERGENIC
X	7237815	X_7237815_SNP [dm3] X_7343782_SNP [dm6]	G	T	6.495e^-5	0.696	INTRON CR44357 & 1 other
2R	16226664	2R_16226664_SNP [dm3] 2R_20339159_SNP [dm6]	G	C	6.499e^-5	0.696	INTERGENIC
2L	14187056	2L_14187056_SNP [dm3] 2L_14187056_SNP [dm6]	C	T	6.713e^-5	0.705	SYNONYMOUS_CODING Dyrk2	TF binding site mE1_TFBS_cad
2L	871902	2L_871902_SNP [dm3] 2L_871902_SNP [dm6]	G	T	6.721e^-5	0.705	SYNONYMOUS_CODING PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19859994	3R_19859994_SNP [dm3] 3R_24034272_SNP [dm6]	G	A	6.743e^-5	0.705	DOWNSTREAM Miro & 1 other INTERGENIC
X	19029937	X_19029937_INS [dm3] X_19135904_INS [dm6]	C	CCC	6.746e^-5	0.705	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
3R	23425812	3R_23425812_SNP [dm3] 3R_27600090_SNP [dm6]	T	C	6.794e^-5	0.705	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
2L	15868466	2L_15868466_SNP [dm3] 2L_15868466_SNP [dm6]	T	C	6.838e^-5	0.705	INTERGENIC
3R	10874159	3R_10874159_SNP [dm3] 3R_15048437_SNP [dm6]	T	A	6.853e^-5	0.705	INTERGENIC
3L	2361039	3L_2361039_SNP [dm3] 3L_2361039_SNP [dm6]	G	A	6.940e^-5	0.705	SYNONYMOUS_CODING CG13801
3L	8667934	3L_8667934_SNP [dm3] 3L_8674834_SNP [dm6]	C	A	6.956e^-5	0.705	UPSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11074326	3L_11074326_SNP [dm3] 3L_11081226_SNP [dm6]	G	A	6.989e^-5	0.705	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13800575	3R_13800575_SNP [dm3] 3R_17974853_SNP [dm6]	C	G	7.005e^-5	0.705	INTRON cpo
3L	16962029	3L_16962029_SNP [dm3] 3L_16968929_SNP [dm6]	C	A	7.028e^-5	0.705	DOWNSTREAM Nc73EF INTERGENIC
3R	18756316	3R_18756316_DEL [dm3] 3R_22930594_DEL [dm6]	ACCTAATGCCA...	A	7.081e^-5	0.706	INTRON klg
2R	13337312	2R_13337312_SNP [dm3] 2R_17449807_SNP [dm6]	C	T	7.133e^-5	0.706	NON_SYNONYMOUS_CODING mthl3
3L	11074230	3L_11074230_SNP [dm3] 3L_11081130_SNP [dm6]	T	C	7.166e^-5	0.706	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15404686	2L_15404686_SNP [dm3] 2L_15404686_SNP [dm6]	T	A	7.195e^-5	0.706	INTERGENIC
2R	16238372	2R_16238372_SNP [dm3] 2R_20350867_SNP [dm6]	C	G	7.228e^-5	0.706	INTERGENIC
3R	4719924	3R_4719924_SNP [dm3] 3R_8894202_SNP [dm6]	A	T	7.313e^-5	0.71	INTRON pyd	TF binding site mE1_TFBS_Trl
3L	13049746	3L_13049746_SNP [dm3] 3L_13056646_SNP [dm6]	A	T	7.384e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11082323	3L_11082323_SNP [dm3] 3L_11089223_SNP [dm6]	A	G	7.392e^-5	0.71	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl
X	12258983	X_12258983_SNP [dm3] X_12364950_SNP [dm6]	A	T	7.423e^-5	0.71	INTERGENIC
2L	871887	2L_871887_SNP [dm3] 2L_871887_SNP [dm6]	G	A	7.480e^-5	0.712	SYNONYMOUS_CODING PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11808243	3L_11808243_SNP [dm3] 3L_11815143_SNP [dm6]	C	T	7.621e^-5	0.722	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9822240	3L_9822240_SNP [dm3] 3L_9829140_SNP [dm6]	G	T	7.709e^-5	0.727	UPSTREAM CG43897 INTRON CG43897
3L	1983120	3L_1983120_SNP [dm3] 3L_1983120_SNP [dm6]	C	T	7.774e^-5	0.728	INTERGENIC
3L	13049698	3L_13049698_SNP [dm3] 3L_13056598_SNP [dm6]	T	A	7.850e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9558267	3R_9558267_SNP [dm3] 3R_13732545_SNP [dm6]	C	A	7.933e^-5	0.728	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13049721	3L_13049721_SNP [dm3] 3L_13056621_SNP [dm6]	T	A	7.948e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14322651	2L_14322651_SNP [dm3] 2L_14322651_SNP [dm6]	A	G	7.970e^-5	0.728	NON_SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2R	6931436	2R_6931436_SNP [dm3] 2R_11043931_SNP [dm6]	G	A	8.013e^-5	0.728	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	8.019e^-5	0.728	INTRON A2bp1
3L	19417592	3L_19417592_SNP [dm3] 3L_19424492_SNP [dm6]	C	A	8.036e^-5	0.728	UPSTREAM CR42838 & 1 other DOWNSTREAM CG33255 INTERGENIC
2L	10173036	2L_10173036_SNP [dm3] 2L_10173036_SNP [dm6]	C	T	8.151e^-5	0.735	SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad
3L	11808632	3L_11808632_SNP [dm3] 3L_11815532_SNP [dm6]	C	G	8.229e^-5	0.735	SYNONYMOUS_CODING CG14130 UPSTREAM CG42255	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10861913	3L_10861913_SNP [dm3] 3L_10868813_SNP [dm6]	G	A	8.231e^-5	0.735	INTRON tna
2R	9345613	2R_9345613_SNP [dm3] 2R_13458108_SNP [dm6]	A	G	8.325e^-5	0.735	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11080144	3L_11080144_DEL [dm3] 3L_11087044_DEL [dm6]	AGAGTTGAGCCTGCTCGA...	A	8.334e^-5	0.735	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3R	18706825	3R_18706825_DEL [dm3] 3R_22881103_DEL [dm6]	TA	T	8.360e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1143049	3L_1143049_SNP [dm3] 3L_1143049_SNP [dm6]	A	G	8.387e^-5	0.735	INTRON bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	15731511	2L_15731511_SNP [dm3] 2L_15731511_SNP [dm6]	T	A	8.440e^-5	0.736	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20807355	3R_20807355_SNP [dm3] 3R_24981633_SNP [dm6]	G	T	8.570e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	10165235	2L_10165235_SNP [dm3] 2L_10165235_SNP [dm6]	T	C	8.570e^-5	0.741	INTRON CG44153
2L	871890	2L_871890_SNP [dm3] 2L_871890_SNP [dm6]	C	T	8.637e^-5	0.741	SYNONYMOUS_CODING PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7509310	X_7509310_INS [dm3] X_7615277_INS [dm6]	T	TC	8.692e^-5	0.741	INTRON ct
X	12258912	X_12258912_DEL [dm3] X_12364879_DEL [dm6]	TGCTGCATTAGTGGATT...	T	8.704e^-5	0.741	INTERGENIC
3L	11069704	3L_11069704_SNP [dm3] 3L_11076604_SNP [dm6]	C	A	8.830e^-5	0.741	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
2L	14452558	2L_14452558_SNP [dm3] 2L_14452558_SNP [dm6]	A	C	8.839e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17530600	2R_17530600_SNP [dm3] 2R_21643095_SNP [dm6]	A	T	8.874e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20928177	X_20928177_SNP [dm3] X_21057150_SNP [dm6]	G	T	8.904e^-5	0.741	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	11112297	3R_11112297_SNP [dm3] 3R_15286575_SNP [dm6]	A	G	8.992e^-5	0.741	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7289984	2R_7289984_SNP [dm3] 2R_11402479_SNP [dm6]	C	T	9.011e^-5	0.741	INTERGENIC
2L	18347648	2L_18347648_SNP [dm3] 2L_18347648_SNP [dm6]	T	C	9.026e^-5	0.741	INTRON Fas3
2R	13001563	2R_13001563_SNP [dm3] 2R_17114058_SNP [dm6]	A	G	9.029e^-5	0.741	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14325022	3L_14325022_DEL [dm3] 3L_14331922_DEL [dm6]	GCA	G	9.101e^-5	0.741	INTRON fz
2L	14452556	2L_14452556_SNP [dm3] 2L_14452556_SNP [dm6]	T	A	9.130e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21011267	X_21011267_SNP [dm3] X_21140240_SNP [dm6]	T	A	9.165e^-5	0.741	UTR_3_PRIME CG34120
3L	8841964	3L_8841964_SNP [dm3] 3L_8848864_SNP [dm6]	C	T	9.211e^-5	0.741	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7610771	3R_7610771_SNP [dm3] 3R_11785049_SNP [dm6]	C	T	9.230e^-5	0.741	SYNONYMOUS_CODING CG17360
2R	14476537	2R_14476537_SNP [dm3] 2R_18589032_SNP [dm6]	T	C	9.261e^-5	0.741	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17987425	2R_17987425_DEL [dm3] 2R_22099920_DEL [dm6]	AA	A	9.286e^-5	0.741	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6760835	3R_6760835_SNP [dm3] 3R_10935113_SNP [dm6]	T	G	9.379e^-5	0.744	INTERGENIC
3R	14063375	3R_14063375_SNP [dm3] 3R_18237653_SNP [dm6]	T	A	9.464e^-5	0.744	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7509309	X_7509309_SNP [dm3] X_7615276_SNP [dm6]	A	G	9.485e^-5	0.744	INTRON ct
3L	11690671	3L_11690671_SNP [dm3] 3L_11697571_SNP [dm6]	T	G	9.487e^-5	0.744	SPLICE_SITE_REGION CG6053 UPSTREAM CG11652 INTRON CG6053	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16031750	2R_16031750_SNP [dm3] 2R_20144245_SNP [dm6]	C	T	9.528e^-5	0.744	INTERGENIC
2L	15861706	2L_15861706_SNP [dm3] 2L_15861706_SNP [dm6]	G	T	9.626e^-5	0.744	INTERGENIC
3R	16211342	3R_16211342_SNP [dm3] 3R_20385620_SNP [dm6]	G	A	9.632e^-5	0.744	INTRON Gfrl
2L	14452560	2L_14452560_SNP [dm3] 2L_14452560_SNP [dm6]	A	T	9.736e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24654389	3R_24654389_SNP [dm3] 3R_28828667_SNP [dm6]	T	A	9.738e^-5	0.744	INTRON WASp
2R	2839016	2R_2839016_SNP [dm3] 2R_6951511_SNP [dm6]	A	G	9.777e^-5	0.744	SYNONYMOUS_CODING ppk25 INTRON mim & 1 other
2L	5977476	2L_5977476_SNP [dm3] 2L_5977476_SNP [dm6]	G	T	9.779e^-5	0.744	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15859924	2L_15859924_SNP [dm3] 2L_15859924_SNP [dm6]	T	C	9.811e^-5	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17678315	2R_17678315_SNP [dm3] 2R_21790810_SNP [dm6]	T	A	9.967e^-5	0.744	SYNONYMOUS_CODING lox2
3R	12187032	3R_12187032_SNP [dm3] 3R_16361310_SNP [dm6]	G	T	9.994e^-5	0.744	NON_SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18109779	2L_18109779_SNP [dm3] 2L_18109779_SNP [dm6]	T	C	1.003e^-4	0.744	INTERGENIC
X	21086744	X_21086744_DEL [dm3] X_21215717_DEL [dm6]	GCC	T	1.003e^-4	0.744	INTRON CG32521
2L	9822575	2L_9822575_SNP [dm3] 2L_9822575_SNP [dm6]	T	G	1.006e^-4	0.744	INTRON nAChRalpha6
X	21086886	X_21086886_SNP [dm3] X_21215859_SNP [dm6]	G	A	1.014e^-4	0.744	INTRON CG32521
3R	10335660	3R_10335660_SNP [dm3] 3R_14509938_SNP [dm6]	G	C	1.017e^-4	0.744	UTR_3_PRIME HtrA2 DOWNSTREAM CR44177	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	7311495	3L_7311495_SNP [dm3] 3L_7318395_SNP [dm6]	C	A	1.017e^-4	0.744	INTERGENIC
3R	10301140	3R_10301140_SNP [dm3] 3R_14475418_SNP [dm6]	G	T	1.029e^-4	0.744	INTRON cv-c
3L	19297636	3L_19297636_SNP [dm3] 3L_19304536_SNP [dm6]	C	T	1.030e^-4	0.744	SYNONYMOUS_CODING pip DOWNSTREAM pip INTRON pip	TF binding site mE1_TFBS_sens
2L	15838483	2L_15838483_SNP [dm3] 2L_15838483_SNP [dm6]	A	G	1.035e^-4	0.744	INTERGENIC
2L	2796690	2L_2796690_SNP [dm3] 2L_2796690_SNP [dm6]	T	A	1.045e^-4	0.744	INTRON Syt1
X	11812858	X_11812858_SNP [dm3] X_11918825_SNP [dm6]	T	A	1.046e^-4	0.744	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3L	7562859	3L_7562859_SNP [dm3] 3L_7569759_SNP [dm6]	G	A	1.049e^-4	0.744	DOWNSTREAM frac INTERGENIC
X	12258978	X_12258978_SNP [dm3] X_12364945_SNP [dm6]	T	C	1.055e^-4	0.744	INTERGENIC
2L	14452578	2L_14452578_SNP [dm3] 2L_14452578_SNP [dm6]	G	A	1.055e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15862647	2L_15862647_SNP [dm3] 2L_15862647_SNP [dm6]	T	G	1.062e^-4	0.744	UPSTREAM CR42791 INTERGENIC
3R	10543173	3R_10543173_INS [dm3] 3R_14717451_INS [dm6]	G	GTTTCTCAGTTTGTATGCCT...	1.074e^-4	0.744	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18315031	2L_18315031_SNP [dm3] 2L_18315031_SNP [dm6]	T	A	1.077e^-4	0.744	UPSTREAM CR44489 INTERGENIC
3L	11083520	3L_11083520_SNP [dm3] 3L_11090420_SNP [dm6]	G	A	1.077e^-4	0.744	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19393569	2L_19393569_SNP [dm3] 2L_19393569_SNP [dm6]	G	A	1.080e^-4	0.744	SYNONYMOUS_CODING CG17544 UPSTREAM CG31798	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3R	18250131	3R_18250131_SNP [dm3] 3R_22424409_SNP [dm6]	G	A	1.080e^-4	0.744	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
2R	17447357	2R_17447357_SNP [dm3] 2R_21559852_SNP [dm6]	T	C	1.086e^-4	0.744	UTR_3_PRIME Egfr DOWNSTREAM CG10440
2L	20146306	2L_20146306_SNP [dm3] 2L_20146306_SNP [dm6]	T	G	1.095e^-4	0.744	INTERGENIC
X	7509406	X_7509406_SNP [dm3] X_7615373_SNP [dm6]	T	G	1.095e^-4	0.744	INTRON ct
3R	16708766	3R_16708766_SNP [dm3] 3R_20883044_SNP [dm6]	G	A	1.110e^-4	0.744	INTERGENIC
3L	7114257	3L_7114257_SNP [dm3] 3L_7121157_SNP [dm6]	C	T	1.110e^-4	0.744	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13814712	2R_13814712_SNP [dm3] 2R_17927207_SNP [dm6]	C	T	1.120e^-4	0.744	DOWNSTREAM Elk INTERGENIC
2L	5402016	2L_5402016_SNP [dm3] 2L_5402016_SNP [dm6]	A	G	1.132e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	14342251	3R_14342251_SNP [dm3] 3R_18516529_SNP [dm6]	C	T	1.134e^-4	0.744	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	19471109	2R_19471109_SNP [dm3] 2R_23583586_SNP [dm6]	G	C	1.135e^-4	0.744	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10520486	3L_10520486_SNP [dm3] 3L_10527386_SNP [dm6]	T	G	1.136e^-4	0.744	INTRON A2bp1
3L	10520487	3L_10520487_SNP [dm3] 3L_10527387_SNP [dm6]	T	A	1.136e^-4	0.744	INTRON A2bp1
3R	8414920	3R_8414920_SNP [dm3] 3R_12589198_SNP [dm6]	A	T	1.141e^-4	0.744	INTRON Octbeta2R	transposable element FlyBase
2L	18323692	2L_18323692_SNP [dm3] 2L_18323692_SNP [dm6]	G	A	1.148e^-4	0.744	INTRON Fas3
2L	17702917	2L_17702917_SNP [dm3] 2L_17702917_SNP [dm6]	C	T	1.150e^-4	0.744	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4779786	3R_4779786_SNP [dm3] 3R_8954064_SNP [dm6]	T	C	1.152e^-4	0.744	INTRON CG11966
3R	25442016	3R_25442016_SNP [dm3] 3R_29616294_SNP [dm6]	C	T	1.152e^-4	0.744	INTRON alph	TF binding site mE1_TFBS_HSA
2L	15868532	2L_15868532_SNP [dm3] 2L_15868532_SNP [dm6]	A	T	1.154e^-4	0.744	INTERGENIC
2L	1633013	2L_1633013_SNP [dm3] 2L_1633013_SNP [dm6]	A	T	1.154e^-4	0.744	INTERGENIC
2L	18113115	2L_18113115_SNP [dm3] 2L_18113115_SNP [dm6]	C	T	1.155e^-4	0.744	INTRON CG44476
2R	16922903	2R_16922903_SNP [dm3] 2R_21035398_SNP [dm6]	C	T	1.159e^-4	0.744	INTERGENIC
X	9918985	X_9918985_SNP [dm3] X_10024952_SNP [dm6]	T	C	1.161e^-4	0.744	INTRON Cht6
3L	13076985	3L_13076985_SNP [dm3] 3L_13083885_SNP [dm6]	G	A	1.165e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	10310820	3R_10310820_SNP [dm3] 3R_14485098_SNP [dm6]	A	T	1.166e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10874144	3R_10874144_SNP [dm3] 3R_15048422_SNP [dm6]	C	T	1.168e^-4	0.744	INTERGENIC
3L	10387528	3L_10387528_SNP [dm3] 3L_10394428_SNP [dm6]	C	A	1.173e^-4	0.744	INTERGENIC
2L	15868762	2L_15868762_SNP [dm3] 2L_15868762_SNP [dm6]	A	T	1.179e^-4	0.744	INTERGENIC
2R	5605965	2R_5605965_SNP [dm3] 2R_9718460_SNP [dm6]	G	T	1.184e^-4	0.744	DOWNSTREAM sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi
3L	11071216	3L_11071216_SNP [dm3] 3L_11078116_SNP [dm6]	G	C	1.184e^-4	0.744	NON_SYNONYMOUS_CODING CG7839 DOWNSTREAM JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19299930	2R_19299930_SNP [dm3] 2R_23412407_SNP [dm6]	T	A	1.185e^-4	0.744	UTR_3_PRIME CG9812
3L	11080059	3L_11080059_SNP [dm3] 3L_11086959_SNP [dm6]	C	A	1.190e^-4	0.744	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
X	20465716	X_20465716_SNP [dm3] X_20594689_SNP [dm6]	G	T	1.198e^-4	0.744	INTRON RunxA
2L	14452604	2L_14452604_SNP [dm3] 2L_14452604_SNP [dm6]	T	A	1.200e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12187882	3R_12187882_SNP [dm3] 3R_16362160_SNP [dm6]	A	T	1.200e^-4	0.744	INTRON CG14880	TF binding site mE1_TFBS_cad
3R	10310917	3R_10310917_SNP [dm3] 3R_14485195_SNP [dm6]	T	G	1.201e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	415326	3L_415326_SNP [dm3] 3L_415326_SNP [dm6]	A	C	1.206e^-4	0.744	INTERGENIC	regulatory region REDfly_CRMs
2L	4564071	2L_4564071_SNP [dm3] 2L_4564071_SNP [dm6]	T	C	1.212e^-4	0.745	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14118978	3L_14118978_SNP [dm3] 3L_14125878_SNP [dm6]	C	T	1.221e^-4	0.747	SYNONYMOUS_CODING Sox21b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15992726	2L_15992726_SNP [dm3] 2L_15992726_SNP [dm6]	A	G	1.225e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12258988	X_12258988_SNP [dm3] X_12364955_SNP [dm6]	G	A	1.231e^-4	0.747	INTERGENIC
2L	6671312	2L_6671312_DEL [dm3] 2L_6671312_DEL [dm6]	AACTA	A	1.234e^-4	0.747	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	11079370	3L_11079370_SNP [dm3] 3L_11086270_SNP [dm6]	A	C	1.235e^-4	0.747	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20929298	X_20929298_SNP [dm3] X_21058271_SNP [dm6]	A	T	1.242e^-4	0.747	INTRON bves
2L	10280996	2L_10280996_SNP [dm3] 2L_10280996_SNP [dm6]	A	G	1.247e^-4	0.747	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
3R	20219766	3R_20219766_DEL [dm3] 3R_24394044_DEL [dm6]	GT	G	1.250e^-4	0.747	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
2R	17989309	2R_17989309_DEL [dm3] 2R_22101804_DEL [dm6]	GAG	G	1.251e^-4	0.747	INTERGENIC
3R	10311580	3R_10311580_SNP [dm3] 3R_14485858_SNP [dm6]	T	C	1.258e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7509396	X_7509396_SNP [dm3] X_7615363_SNP [dm6]	G	A	1.264e^-4	0.747	INTRON ct
2L	10517339	2L_10517339_SNP [dm3] 2L_10517339_SNP [dm6]	T	C	1.269e^-4	0.747	UTR_5_PRIME Lrr47 UPSTREAM Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23425806	3R_23425806_SNP [dm3] 3R_27600084_SNP [dm6]	A	G	1.278e^-4	0.747	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
X	7509433	X_7509433_SNP [dm3] X_7615400_SNP [dm6]	A	G	1.284e^-4	0.747	INTRON ct
2L	14911019	2L_14911019_SNP [dm3] 2L_14911019_SNP [dm6]	G	A	1.292e^-4	0.747	INTRON CG42313
3R	14995902	3R_14995902_SNP [dm3] 3R_19170180_SNP [dm6]	G	T	1.292e^-4	0.747	UTR_3_PRIME sqz
2L	13074012	2L_13074012_SNP [dm3] 2L_13074012_SNP [dm6]	C	T	1.297e^-4	0.747	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10519956	3L_10519956_DEL [dm3] 3L_10526856_DEL [dm6]	TGCTGACT	T	1.300e^-4	0.747	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9685639	2R_9685639_SNP [dm3] 2R_13798134_SNP [dm6]	G	A	1.304e^-4	0.747	INTRON Cpr50Cb
2L	1244160	2L_1244160_SNP [dm3] 2L_1244160_SNP [dm6]	C	T	1.306e^-4	0.747	INTERGENIC
2L	15868782	2L_15868782_SNP [dm3] 2L_15868782_SNP [dm6]	G	T	1.309e^-4	0.747	INTERGENIC
2R	17678309	2R_17678309_SNP [dm3] 2R_21790804_SNP [dm6]	G	A	1.311e^-4	0.747	SYNONYMOUS_CODING lox2
2L	15852781	2L_15852781_SNP [dm3] 2L_15852781_SNP [dm6]	G	A	1.315e^-4	0.747	SYNONYMOUS_CODING CG13243
3R	16055867	3R_16055867_SNP [dm3] 3R_20230145_SNP [dm6]	T	A	1.320e^-4	0.747	INTRON Nlg4
X	20928133	X_20928133_DEL [dm3] X_21057106_DEL [dm6]	ATCGGAAGTCCAA...	A	1.320e^-4	0.747	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	11083266	3L_11083266_SNP [dm3] 3L_11090166_SNP [dm6]	T	A	1.321e^-4	0.747	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15865893	2L_15865893_SNP [dm3] 2L_15865893_SNP [dm6]	T	G	1.324e^-4	0.747	UPSTREAM CG42792 INTERGENIC
2R	7122920	2R_7122920_SNP [dm3] 2R_11235415_SNP [dm6]	C	G	1.327e^-4	0.747	NON_SYNONYMOUS_CODING CG13227 UPSTREAM CG34223 DOWNSTREAM CG13228 & 1 other	TF binding site mE1_TFBS_chinmo
2L	6485631	2L_6485631_SNP [dm3] 2L_6485631_SNP [dm6]	G	T	1.347e^-4	0.756	NON_SYNONYMOUS_CODING DLP
3L	11189581	3L_11189581_SNP [dm3] 3L_11196481_SNP [dm6]	G	T	1.350e^-4	0.756	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2437719	3L_2437719_INS [dm3] 3L_2437719_INS [dm6]	G	GG	1.360e^-4	0.759	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10311620	3R_10311620_SNP [dm3] 3R_14485898_SNP [dm6]	C	A	1.378e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7116771	X_7116771_SNP [dm3] X_7222738_SNP [dm6]	T	C	1.383e^-4	0.767	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8857743	3L_8857743_SNP [dm3] 3L_8864643_SNP [dm6]	A	C	1.399e^-4	0.771	INTRON dally
3R	6760785	3R_6760785_SNP [dm3] 3R_10935063_SNP [dm6]	A	T	1.401e^-4	0.771	INTERGENIC
2L	7161405	2L_7161405_SNP [dm3] 2L_7161405_SNP [dm6]	G	A	1.413e^-4	0.771	INTERGENIC
2R	17212359	2R_17212359_SNP [dm3] 2R_21324854_SNP [dm6]	A	T	1.417e^-4	0.771	UPSTREAM snoRNA:Me28S-A2589a INTRON dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2R	20485434	2R_20485434_SNP [dm3] 2R_24597911_SNP [dm6]	C	A	1.422e^-4	0.771	UPSTREAM CG13587 DOWNSTREAM pio INTERGENIC
3R	16932444	3R_16932444_SNP [dm3] 3R_21106722_SNP [dm6]	G	A	1.440e^-4	0.771	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11303031	3L_11303031_SNP [dm3] 3L_11309931_SNP [dm6]	C	T	1.444e^-4	0.771	INTERGENIC
2L	11951486	2L_11951486_SNP [dm3] 2L_11951486_SNP [dm6]	C	G	1.447e^-4	0.771	DOWNSTREAM CR43314 INTERGENIC
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	1.452e^-4	0.771	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19584265	2L_19584265_SNP [dm3] 2L_19584265_SNP [dm6]	C	T	1.456e^-4	0.771	UTR_5_PRIME CG10366 UPSTREAM CG10262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1141862	3L_1141862_SNP [dm3] 3L_1141862_SNP [dm6]	C	A	1.464e^-4	0.771	UTR_3_PRIME bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	10703073	2L_10703073_DEL [dm3] 2L_10703073_DEL [dm6]	TTTATTT	AC	1.468e^-4	0.771	UPSTREAM CG6415 INTRON Lip2
2R	15441829	2R_15441829_SNP [dm3] 2R_19554324_SNP [dm6]	T	C	1.468e^-4	0.771	INTRON sm
3L	7311521	3L_7311521_SNP [dm3] 3L_7318421_SNP [dm6]	T	G	1.473e^-4	0.771	INTERGENIC
3L	1138203	3L_1138203_SNP [dm3] 3L_1138203_SNP [dm6]	A	T	1.477e^-4	0.771	INTERGENIC
2L	20137475	2L_20137475_SNP [dm3] 2L_20137475_SNP [dm6]	T	C	1.483e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14818682	3R_14818682_SNP [dm3] 3R_18992960_SNP [dm6]	T	C	1.487e^-4	0.771	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	18250224	3R_18250224_SNP [dm3] 3R_22424502_SNP [dm6]	T	C	1.489e^-4	0.771	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
2R	19612255	2R_19612255_SNP [dm3] 2R_23724732_SNP [dm6]	T	C	1.496e^-4	0.771	INTRON Sesn
3L	13470157	3L_13470157_DEL [dm3] 3L_13477057_DEL [dm6]	AACCGT	A	1.501e^-4	0.771	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11303022	3L_11303022_SNP [dm3] 3L_11309922_SNP [dm6]	A	T	1.502e^-4	0.771	INTERGENIC
2L	18094226	2L_18094226_SNP [dm3] 2L_18094226_SNP [dm6]	C	T	1.506e^-4	0.771	INTERGENIC
3R	25427907	3R_25427907_SNP [dm3] 3R_29602185_SNP [dm6]	G	A	1.508e^-4	0.771	INTRON alph
2L	16046551	2L_16046551_SNP [dm3] 2L_16046551_SNP [dm6]	C	T	1.513e^-4	0.771	INTRON BicC & 1 other
2R	13814716	2R_13814716_SNP [dm3] 2R_17927211_SNP [dm6]	T	C	1.514e^-4	0.771	DOWNSTREAM Elk INTERGENIC
X	19586910	X_19586910_SNP [dm3] X_19692877_SNP [dm6]	C	A	1.517e^-4	0.771	SYNONYMOUS_CODING Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10412459	3R_10412459_SNP [dm3] 3R_14586737_SNP [dm6]	T	A	1.524e^-4	0.771	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14452482	2L_14452482_SNP [dm3] 2L_14452482_SNP [dm6]	G	A	1.529e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	744107	2L_744107_SNP [dm3] 2L_744107_SNP [dm6]	T	C	1.530e^-4	0.771	UTR_5_PRIME Eaat2 INTRON Eaat2
2R	3305569	2R_3305569_SNP [dm3] 2R_7418064_SNP [dm6]	C	T	1.533e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16962041	3L_16962041_SNP [dm3] 3L_16968941_SNP [dm6]	T	C	1.535e^-4	0.771	DOWNSTREAM Nc73EF INTERGENIC
3L	20732593	3L_20732593_SNP [dm3] 3L_20739493_SNP [dm6]	T	A	1.537e^-4	0.771	UPSTREAM Gr77a INTRON CG13252
3L	5372832	3L_5372832_SNP [dm3] 3L_5379732_SNP [dm6]	G	A	1.545e^-4	0.771	SYNONYMOUS_CODING Ir64a
3R	22303047	3R_22303047_SNP [dm3] 3R_26477325_SNP [dm6]	G	A	1.546e^-4	0.771	INTRON plum
X	19516005	X_19516005_SNP [dm3] X_19621972_SNP [dm6]	T	A	1.546e^-4	0.771	UTR_3_PRIME NAA20 UPSTREAM CG14221 INTRON NAA20
3R	25442001	3R_25442001_SNP [dm3] 3R_29616279_SNP [dm6]	A	C	1.547e^-4	0.771	INTRON alph
2L	14452476	2L_14452476_SNP [dm3] 2L_14452476_SNP [dm6]	C	A	1.555e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16042646	3L_16042646_SNP [dm3] 3L_16049546_SNP [dm6]	G	A	1.555e^-4	0.771	INTRON th & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17507584	2R_17507584_SNP [dm3] 2R_21620079_SNP [dm6]	G	A	1.561e^-4	0.771	SYNONYMOUS_CODING PTP-ER UPSTREAM clt	TF binding site mE1_TFBS_cad
2L	18108479	2L_18108479_SNP [dm3] 2L_18108479_SNP [dm6]	A	T	1.563e^-4	0.771	INTERGENIC
3R	10326818	3R_10326818_SNP [dm3] 3R_14501096_SNP [dm6]	G	T	1.566e^-4	0.771	INTRON CR44177
2R	9754182	2R_9754182_INS [dm3] 2R_13866677_INS [dm6]	A	AA	1.567e^-4	0.771	INTRON shot
3R	22303044	3R_22303044_SNP [dm3] 3R_26477322_SNP [dm6]	A	T	1.568e^-4	0.771	INTRON plum
X	19029992	X_19029992_SNP [dm3] X_19135959_SNP [dm6]	G	A	1.572e^-4	0.771	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
3L	7028066	3L_7028066_SNP [dm3] 3L_7034966_SNP [dm6]	T	C	1.575e^-4	0.771	SPLICE_SITE_REGION Mp INTRON Mp
2L	15885640	2L_15885640_SNP [dm3] 2L_15885640_SNP [dm6]	C	A	1.607e^-4	0.78	INTERGENIC
2R	17855455	2R_17855455_SNP [dm3] 2R_21967950_SNP [dm6]	T	C	1.608e^-4	0.78	INTRON ppk9
3R	14342260	3R_14342260_SNP [dm3] 3R_18516538_SNP [dm6]	A	G	1.614e^-4	0.78	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	3448415	3R_3448415_SNP [dm3] 3R_7622693_SNP [dm6]	C	A	1.614e^-4	0.78	INTRON CG34127
3R	22302967	3R_22302967_SNP [dm3] 3R_26477245_SNP [dm6]	T	C	1.619e^-4	0.78	SYNONYMOUS_CODING plum
2L	19966379	2L_19966379_SNP [dm3] 2L_19966379_SNP [dm6]	T	A	1.622e^-4	0.78	DOWNSTREAM CG10680 & 1 other INTRON OS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22303064	3R_22303064_SNP [dm3] 3R_26477342_SNP [dm6]	T	G	1.627e^-4	0.78	INTRON plum
3L	19415918	3L_19415918_SNP [dm3] 3L_19422818_SNP [dm6]	A	T	1.636e^-4	0.78	UPSTREAM CG33255 DOWNSTREAM CR32205 INTERGENIC
2R	16803338	2R_16803338_SNP [dm3] 2R_20915833_SNP [dm6]	A	C	1.636e^-4	0.78	UPSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	14899000	3R_14899000_SNP [dm3] 3R_19073278_SNP [dm6]	T	G	1.649e^-4	0.78	INTRON cdi
2L	15868790	2L_15868790_SNP [dm3] 2L_15868790_SNP [dm6]	A	T	1.652e^-4	0.78	INTERGENIC
2R	9658175	2R_9658175_SNP [dm3] 2R_13770670_SNP [dm6]	G	A	1.656e^-4	0.78	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12259307	X_12259307_SNP [dm3] X_12365274_SNP [dm6]	G	A	1.657e^-4	0.78	INTERGENIC
3L	6622374	3L_6622374_SNP [dm3] 3L_6629274_SNP [dm6]	C	T	1.666e^-4	0.78	INTRON GluRIA
3L	6622378	3L_6622378_SNP [dm3] 3L_6629278_SNP [dm6]	T	C	1.666e^-4	0.78	INTRON GluRIA
3R	5395742	3R_5395742_SNP [dm3] 3R_9570020_SNP [dm6]	G	A	1.671e^-4	0.78	DOWNSTREAM CG16789 & 1 other INTRON CG16790	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	19974623	3R_19974623_DEL [dm3] 3R_24148901_DEL [dm6]	TT	T	1.708e^-4	0.78	UTR_5_PRIME Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	11072076	3L_11072076_SNP [dm3] 3L_11078976_SNP [dm6]	C	T	1.711e^-4	0.78	UTR_3_PRIME JIL-1 DOWNSTREAM JIL-1 & 1 other
2L	9250553	2L_9250553_SNP [dm3] 2L_9250553_SNP [dm6]	C	T	1.713e^-4	0.78	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA
3L	10520321	3L_10520321_SNP [dm3] 3L_10527221_SNP [dm6]	G	T	1.716e^-4	0.78	INTRON A2bp1
2L	18113143	2L_18113143_SNP [dm3] 2L_18113143_SNP [dm6]	G	C	1.719e^-4	0.78	START_GAINED CG44476 UTR_5_PRIME CG44476
3R	16931850	3R_16931850_SNP [dm3] 3R_21106128_SNP [dm6]	C	T	1.721e^-4	0.78	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23424923	3R_23424923_SNP [dm3] 3R_27599201_SNP [dm6]	A	G	1.724e^-4	0.78	INTRON dsd
2L	15865753	2L_15865753_SNP [dm3] 2L_15865753_SNP [dm6]	T	A	1.724e^-4	0.78	UPSTREAM CG42792 INTERGENIC
2R	17964874	2R_17964874_SNP [dm3] 2R_22077369_SNP [dm6]	T	C	1.726e^-4	0.78	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17510630	2R_17510630_SNP [dm3] 2R_21623125_SNP [dm6]	G	A	1.729e^-4	0.78	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25337636	3R_25337636_SNP [dm3] 3R_29511914_SNP [dm6]	T	C	1.735e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12188123	3R_12188123_SNP [dm3] 3R_16362401_SNP [dm6]	T	C	1.742e^-4	0.78	NON_SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad
X	12434118	X_12434118_SNP [dm3] X_12540085_SNP [dm6]	A	C	1.764e^-4	0.78	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2R	10789918	2R_10789918_SNP [dm3] 2R_14902413_SNP [dm6]	A	G	1.766e^-4	0.78	UTR_3_PRIME Cyp317a1 INTRON CG10249	TF binding site BDTNP1_TFBS_sna
X	19042418	X_19042418_INS [dm3] X_19148385_INS [dm6]	A	AA	1.771e^-4	0.78	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
2L	1030376	2L_1030376_SNP [dm3] 2L_1030376_SNP [dm6]	C	A	1.773e^-4	0.78	INTRON IA-2
2R	5949907	2R_5949907_SNP [dm3] 2R_10062402_SNP [dm6]	G	A	1.777e^-4	0.78	SYNONYMOUS_CODING magu DOWNSTREAM CG2292
2L	20285277	2L_20285277_SNP [dm3] 2L_20285277_SNP [dm6]	C	T	1.781e^-4	0.78	INTERGENIC
2R	10286573	2R_10286573_SNP [dm3] 2R_14399068_SNP [dm6]	T	A	1.795e^-4	0.78	INTERGENIC
3R	22407288	3R_22407288_SNP [dm3] 3R_26581566_SNP [dm6]	C	A	1.797e^-4	0.78	DOWNSTREAM scrib INTRON scrib
X	20929308	X_20929308_SNP [dm3] X_21058281_SNP [dm6]	A	T	1.800e^-4	0.78	INTRON bves
3L	11189633	3L_11189633_SNP [dm3] 3L_11196533_SNP [dm6]	G	T	1.810e^-4	0.78	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5836698	2R_5836698_SNP [dm3] 2R_9949193_SNP [dm6]	A	T	1.814e^-4	0.78	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11068149	3L_11068149_SNP [dm3] 3L_11075049_SNP [dm6]	G	A	1.820e^-4	0.78	SYNONYMOUS_CODING CG7839 UPSTREAM l_3_01239
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	1.824e^-4	0.78	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
2L	15886102	2L_15886102_SNP [dm3] 2L_15886102_SNP [dm6]	A	G	1.826e^-4	0.78	INTERGENIC
3R	10594069	3R_10594069_SNP [dm3] 3R_14768347_SNP [dm6]	T	A	1.831e^-4	0.78	INTRON jvl
2L	4660703	2L_4660703_SNP [dm3] 2L_4660703_SNP [dm6]	G	T	1.831e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24225692	3L_24225692_SNP [dm3] 3L_24232592_SNP [dm6]	G	A	1.831e^-4	0.78	INTRON Snap25
2L	6678331	2L_6678331_SNP [dm3] 2L_6678331_SNP [dm6]	A	T	1.834e^-4	0.78	UTR_3_PRIME Nhe3 UPSTREAM CG11329 DOWNSTREAM Nhe3 INTRON Nhe3
X	11840091	X_11840091_SNP [dm3] X_11946058_SNP [dm6]	T	A	1.838e^-4	0.78	INTRON cac
X	12258904	X_12258904_SNP [dm3] X_12364871_SNP [dm6]	A	C	1.849e^-4	0.78	INTERGENIC
2L	18347674	2L_18347674_SNP [dm3] 2L_18347674_SNP [dm6]	A	C	1.850e^-4	0.78	INTRON Fas3
2L	15883182	2L_15883182_SNP [dm3] 2L_15883182_SNP [dm6]	T	A	1.852e^-4	0.78	UTR_5_PRIME CG44475
2R	17716463	2R_17716463_SNP [dm3] 2R_21828958_SNP [dm6]	A	C	1.853e^-4	0.78	INTRON CG13492	TF binding site mE1_TFBS_cad
X	20928877	X_20928877_SNP [dm3] X_21057850_SNP [dm6]	G	A	1.854e^-4	0.78	INTRON bves	TF binding site BDTNP1_TFBS_dl
3L	9018948	3L_9018948_DEL [dm3] 3L_9025848_DEL [dm6]	TT	T	1.860e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12195337	2L_12195337_SNP [dm3] 2L_12195337_SNP [dm6]	G	A	1.863e^-4	0.78	INTRON aret
3R	4411779	3R_4411779_SNP [dm3] 3R_8586057_SNP [dm6]	C	A	1.866e^-4	0.78	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	12800147	2L_12800147_SNP [dm3] 2L_12800147_SNP [dm6]	C	G	1.885e^-4	0.78	INTERGENIC
3L	2360223	3L_2360223_SNP [dm3] 3L_2360223_SNP [dm6]	C	A	1.887e^-4	0.78	UPSTREAM CG13801 INTERGENIC
2L	19931994	2L_19931994_SNP [dm3] 2L_19931994_SNP [dm6]	A	G	1.888e^-4	0.78	INTRON sick
3L	16368700	3L_16368700_SNP [dm3] 3L_16375600_SNP [dm6]	A	G	1.894e^-4	0.78	NON_SYNONYMOUS_CODING roq	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11072468	3L_11072468_SNP [dm3] 3L_11079368_SNP [dm6]	T	C	1.898e^-4	0.78	UTR_3_PRIME JIL-1 DOWNSTREAM JIL-1 & 1 other
3R	9877476	3R_9877476_SNP [dm3] 3R_14051754_SNP [dm6]	A	G	1.902e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6916183	2L_6916183_SNP [dm3] 2L_6916183_SNP [dm6]	C	G	1.904e^-4	0.78	NON_SYNONYMOUS_CODING CG32829 DOWNSTREAM nop5 INTRON x16
3R	9861532	3R_9861532_SNP [dm3] 3R_14035810_SNP [dm6]	A	G	1.905e^-4	0.78	DOWNSTREAM CG3061 INTRON CG9922	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	19324728	2R_19324728_SNP [dm3] 2R_23437205_SNP [dm6]	C	T	1.910e^-4	0.78	INTERGENIC
2R	16803366	2R_16803366_SNP [dm3] 2R_20915861_SNP [dm6]	T	C	1.912e^-4	0.78	UPSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	14901339	2R_14901339_SNP [dm3] 2R_19013834_SNP [dm6]	A	G	1.919e^-4	0.78	INTERGENIC
2R	20031643	2R_20031643_SNP [dm3] 2R_24144120_SNP [dm6]	T	G	1.921e^-4	0.78	INTRON Dat
3R	2716608	3R_2716608_SNP [dm3] 3R_6890886_SNP [dm6]	A	G	1.922e^-4	0.78	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	10221754	X_10221754_SNP [dm3] X_10327721_SNP [dm6]	G	A	1.924e^-4	0.78	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15864940	2L_15864940_SNP [dm3] 2L_15864940_SNP [dm6]	A	T	1.928e^-4	0.78	UTR_3_PRIME CG42792 DOWNSTREAM CG42792
2L	15852790	2L_15852790_SNP [dm3] 2L_15852790_SNP [dm6]	G	A	1.938e^-4	0.78	SYNONYMOUS_CODING CG13243
X	20929310	X_20929310_DEL [dm3] X_21058283_DEL [dm6]	TG	T	1.940e^-4	0.78	INTRON bves
2R	20031640	2R_20031640_SNP [dm3] 2R_24144117_SNP [dm6]	C	G	1.943e^-4	0.78	INTRON Dat
X	20929304	X_20929304_SNP [dm3] X_21058277_SNP [dm6]	A	T	1.964e^-4	0.78	INTRON bves
3L	8842028	3L_8842028_SNP [dm3] 3L_8848928_SNP [dm6]	G	C	1.964e^-4	0.78	INTRON dally
2L	15868747	2L_15868747_SNP [dm3] 2L_15868747_SNP [dm6]	A	T	1.966e^-4	0.78	INTERGENIC
3L	11807932	3L_11807932_SNP [dm3] 3L_11814832_SNP [dm6]	A	T	1.974e^-4	0.78	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3455989	3R_3455989_SNP [dm3] 3R_7630267_SNP [dm6]	G	A	1.977e^-4	0.78	INTRON CG34127
2R	20031716	2R_20031716_SNP [dm3] 2R_24144193_SNP [dm6]	G	A	1.985e^-4	0.78	INTRON Dat
3L	4015088	3L_4015088_SNP [dm3] 3L_4015088_SNP [dm6]	T	A	1.986e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	12188496	3R_12188496_SNP [dm3] 3R_16362774_SNP [dm6]	T	G	1.996e^-4	0.78	INTRON CG14880
2L	2723272	2L_2723272_DEL [dm3] 2L_2723272_DEL [dm6]	GTTTA	G	2.004e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15868744	2L_15868744_SNP [dm3] 2L_15868744_SNP [dm6]	C	A	2.010e^-4	0.78	INTERGENIC
3L	17490785	3L_17490785_SNP [dm3] 3L_17497685_SNP [dm6]	G	T	2.019e^-4	0.78	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	18317364	2R_18317364_SNP [dm3] 2R_22429859_SNP [dm6]	A	G	2.021e^-4	0.78	DOWNSTREAM ppk12 INTERGENIC
X	18143534	X_18143534_SNP [dm3] X_18249501_SNP [dm6]	A	T	2.023e^-4	0.78	INTERGENIC
X	18143543	X_18143543_SNP [dm3] X_18249510_SNP [dm6]	G	A	2.023e^-4	0.78	INTERGENIC
3R	8932696	3R_8932696_SNP [dm3] 3R_13106974_SNP [dm6]	A	G	2.024e^-4	0.78	INTRON timeout
3R	17467999	3R_17467999_SNP [dm3] 3R_21642277_SNP [dm6]	G	A	2.037e^-4	0.78	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	13923511	3R_13923511_SNP [dm3] 3R_18097789_SNP [dm6]	T	G	2.043e^-4	0.78	INTRON sr
2L	2723277	2L_2723277_INS [dm3] 2L_2723277_INS [dm6]	A	ATGATGC	2.051e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18195974	3R_18195974_DEL [dm3] 3R_22370252_DEL [dm6]	AT	A	2.056e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14222109	2L_14222109_SNP [dm3] 2L_14222109_SNP [dm6]	T	A	2.062e^-4	0.78	INTRON Dyrk2
2L	18347625	2L_18347625_SNP [dm3] 2L_18347625_SNP [dm6]	A	G	2.067e^-4	0.78	INTRON Fas3
2R	1735860	2R_1735860_SNP [dm3] 2R_5848355_SNP [dm6]	G	A	2.073e^-4	0.78	INTRON dpr12
2L	17713615	2L_17713615_SNP [dm3] 2L_17713615_SNP [dm6]	C	G	2.079e^-4	0.78	INTRON CadN
2R	2986938	2R_2986938_SNP [dm3] 2R_7099433_SNP [dm6]	G	A	2.087e^-4	0.78	INTRON esn
2L	17633608	2L_17633608_SNP [dm3] 2L_17633608_SNP [dm6]	A	C	2.101e^-4	0.78	INTERGENIC
2L	15885858	2L_15885858_SNP [dm3] 2L_15885858_SNP [dm6]	G	T	2.107e^-4	0.78	INTERGENIC
3R	9150386	3R_9150386_DEL [dm3] 3R_13324664_DEL [dm6]	AA	A	2.108e^-4	0.78	INTERGENIC
3R	9150389	3R_9150389_SNP [dm3] 3R_13324667_SNP [dm6]	G	A	2.108e^-4	0.78	INTERGENIC
3R	10298469	3R_10298469_SNP [dm3] 3R_14472747_SNP [dm6]	T	C	2.109e^-4	0.78	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9167764	2L_9167764_SNP [dm3] 2L_9167764_SNP [dm6]	G	T	2.112e^-4	0.78	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8637220	3R_8637220_SNP [dm3] 3R_12811498_SNP [dm6]	G	A	2.128e^-4	0.78	SYNONYMOUS_CODING CG31345
2R	17855461	2R_17855461_SNP [dm3] 2R_21967956_SNP [dm6]	G	A	2.133e^-4	0.78	INTRON ppk9
3L	11303005	3L_11303005_SNP [dm3] 3L_11309905_SNP [dm6]	T	A	2.138e^-4	0.78	INTERGENIC
2R	18317511	2R_18317511_SNP [dm3] 2R_22430006_SNP [dm6]	G	A	2.138e^-4	0.78	DOWNSTREAM ppk12 INTERGENIC
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	2.142e^-4	0.78	INTERGENIC
2L	508878	2L_508878_SNP [dm3] 2L_508878_SNP [dm6]	A	G	2.145e^-4	0.78	INTRON ush
3R	3439656	3R_3439656_SNP [dm3] 3R_7613934_SNP [dm6]	C	T	2.151e^-4	0.78	INTRON CG34127
2L	20591700	2L_20591700_DEL [dm3] 2L_20591700_DEL [dm6]	AA	A	2.155e^-4	0.78	INTRON CR44909
3R	4883157	3R_4883157_SNP [dm3] 3R_9057435_SNP [dm6]	T	A	2.164e^-4	0.78	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	18195831	3R_18195831_SNP [dm3] 3R_22370109_SNP [dm6]	C	T	2.184e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9194541	2L_9194541_SNP [dm3] 2L_9194541_SNP [dm6]	G	C	2.185e^-4	0.78	INTRON tai
2L	11378576	2L_11378576_INS [dm3] 2L_11378576_INS [dm6]	C	CC	2.189e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	18195921	3R_18195921_DEL [dm3] 3R_22370199_DEL [dm6]	TAAAATCATTACCT...	T	2.190e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6485600	2L_6485600_SNP [dm3] 2L_6485600_SNP [dm6]	C	A	2.193e^-4	0.78	SYNONYMOUS_CODING DLP
3L	4005200	3L_4005200_SNP [dm3] 3L_4005200_SNP [dm6]	C	T	2.201e^-4	0.78	UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11173199	3L_11173199_SNP [dm3] 3L_11180099_SNP [dm6]	T	G	2.205e^-4	0.78	INTRON GlcAT-P
X	19946484	X_19946484_SNP [dm3] X_20052451_SNP [dm6]	C	A	2.206e^-4	0.78	UTR_3_PRIME CG9570 INTRON Dop2R
2L	10167366	2L_10167366_SNP [dm3] 2L_10167366_SNP [dm6]	C	T	2.208e^-4	0.78	INTRON CG44153
2R	5835023	2R_5835023_SNP [dm3] 2R_9947518_SNP [dm6]	A	T	2.212e^-4	0.78	INTRON Mef2	TF binding site mE1_TFBS_sens
2L	18120437	2L_18120437_SNP [dm3] 2L_18120437_SNP [dm6]	A	T	2.215e^-4	0.78	INTRON CG5758
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	2.216e^-4	0.78	INTERGENIC
2L	1884631	2L_1884631_INS [dm3] 2L_1884631_INS [dm6]	T	TGAAGAT	2.229e^-4	0.78	UTR_5_PRIME CG7337 UPSTREAM CG15358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19938978	2L_19938978_SNP [dm3] 2L_19938978_SNP [dm6]	T	A	2.232e^-4	0.78	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	14388560	3R_14388560_SNP [dm3] 3R_18562838_SNP [dm6]	A	G	2.245e^-4	0.78	INTERGENIC
X	8440563	X_8440563_SNP [dm3] X_8546530_SNP [dm6]	C	T	2.248e^-4	0.78	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16803499	2R_16803499_SNP [dm3] 2R_20915994_SNP [dm6]	T	C	2.248e^-4	0.78	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	17164498	2R_17164498_SNP [dm3] 2R_21276993_SNP [dm6]	C	T	2.249e^-4	0.78	INTRON Rgk3
2L	19938977	2L_19938977_SNP [dm3] 2L_19938977_SNP [dm6]	G	A	2.251e^-4	0.78	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17740582	2R_17740582_SNP [dm3] 2R_21853077_SNP [dm6]	T	G	2.276e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_cad
X	12260215	X_12260215_SNP [dm3] X_12366182_SNP [dm6]	G	T	2.277e^-4	0.78	INTERGENIC
2L	1200243	2L_1200243_SNP [dm3] 2L_1200243_SNP [dm6]	C	T	2.279e^-4	0.78	NON_SYNONYMOUS_CODING CG43349 UPSTREAM CG5139 & 1 other DOWNSTREAM CG43348
3L	24202282	3L_24202282_SNP [dm3] 3L_24209182_SNP [dm6]	T	C	2.282e^-4	0.78	INTRON Snap25
2R	2987408	2R_2987408_SNP [dm3] 2R_7099903_SNP [dm6]	G	A	2.282e^-4	0.78	INTRON esn
2L	20600915	2L_20600915_SNP [dm3] 2L_20600915_SNP [dm6]	T	C	2.283e^-4	0.78	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12863189	3L_12863189_SNP [dm3] 3L_12870089_SNP [dm6]	T	A	2.286e^-4	0.78	INTERGENIC
3R	17050981	3R_17050981_SNP [dm3] 3R_21225259_SNP [dm6]	T	C	2.289e^-4	0.78	SYNONYMOUS_CODING Nelf-A UPSTREAM CR44265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	11928802	2L_11928802_SNP [dm3] 2L_11928802_SNP [dm6]	A	G	2.291e^-4	0.78	UPSTREAM Pde1c INTERGENIC	TF binding site mE1_TFBS_inv
3L	4008675	3L_4008675_SNP [dm3] 3L_4008675_SNP [dm6]	T	C	2.297e^-4	0.78	INTERGENIC
2R	17211359	2R_17211359_SNP [dm3] 2R_21323854_SNP [dm6]	A	T	2.302e^-4	0.78	UPSTREAM CG30394 INTRON dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	15868743	2L_15868743_SNP [dm3] 2L_15868743_SNP [dm6]	A	G	2.305e^-4	0.78	INTERGENIC
3L	10866805	3L_10866805_SNP [dm3] 3L_10873705_SNP [dm6]	A	G	2.308e^-4	0.78	SYNONYMOUS_CODING tna	TF binding site mE1_TFBS_cad
2L	18323697	2L_18323697_SNP [dm3] 2L_18323697_SNP [dm6]	C	A	2.310e^-4	0.78	INTRON Fas3
3R	18195895	3R_18195895_SNP [dm3] 3R_22370173_SNP [dm6]	A	T	2.323e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14455930	2R_14455930_SNP [dm3] 2R_18568425_SNP [dm6]	T	G	2.329e^-4	0.78	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2106658	3L_2106658_SNP [dm3] 3L_2106658_SNP [dm6]	G	A	2.336e^-4	0.78	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14914304	2L_14914304_SNP [dm3] 2L_14914304_SNP [dm6]	T	G	2.336e^-4	0.78	NON_SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_HSA
2L	19471440	2L_19471440_SNP [dm3] 2L_19471440_SNP [dm6]	C	G	2.337e^-4	0.78	UPSTREAM CR45723 EXON CR43839
2R	9695182	2R_9695182_SNP [dm3] 2R_13807677_SNP [dm6]	A	C	2.341e^-4	0.78	INTRON stj
3R	10527898	3R_10527898_SNP [dm3] 3R_14702176_SNP [dm6]	T	A	2.346e^-4	0.78	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14342216	3R_14342216_SNP [dm3] 3R_18516494_SNP [dm6]	T	C	2.348e^-4	0.78	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	14522727	3R_14522727_SNP [dm3] 3R_18697005_SNP [dm6]	C	T	2.354e^-4	0.78	INTERGENIC
2L	18323682	2L_18323682_SNP [dm3] 2L_18323682_SNP [dm6]	C	G	2.363e^-4	0.78	INTRON Fas3
2R	9695700	2R_9695700_SNP [dm3] 2R_13808195_SNP [dm6]	G	A	2.369e^-4	0.78	INTRON stj
3R	14747634	3R_14747634_SNP [dm3] 3R_18921912_SNP [dm6]	G	C	2.373e^-4	0.78	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl
2L	17713619	2L_17713619_SNP [dm3] 2L_17713619_SNP [dm6]	G	A	2.375e^-4	0.78	INTRON CadN
3R	16170628	3R_16170628_SNP [dm3] 3R_20344906_SNP [dm6]	C	T	2.383e^-4	0.78	INTERGENIC
3R	16166512	3R_16166512_SNP [dm3] 3R_20340790_SNP [dm6]	T	C	2.383e^-4	0.78	INTRON Ir92a	TF binding site mE1_TFBS_cad
2R	13119358	2R_13119358_SNP [dm3] 2R_17231853_SNP [dm6]	A	T	2.384e^-4	0.78	INTRON mbl
2R	13119368	2R_13119368_SNP [dm3] 2R_17231863_SNP [dm6]	G	A	2.384e^-4	0.78	INTRON mbl
2R	13119530	2R_13119530_INS [dm3] 2R_17232025_INS [dm6]	G	GG	2.384e^-4	0.78	INTRON mbl
2R	9695143	2R_9695143_SNP [dm3] 2R_13807638_SNP [dm6]	C	A	2.387e^-4	0.78	INTRON stj
3R	18195884	3R_18195884_SNP [dm3] 3R_22370162_SNP [dm6]	A	C	2.387e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	871971	2L_871971_SNP [dm3] 2L_871971_SNP [dm6]	A	T	2.406e^-4	0.78	SYNONYMOUS_CODING PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	1684235	X_1684235_SNP [dm3] X_1790202_SNP [dm6]	G	T	2.415e^-4	0.78	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
3R	18195888	3R_18195888_SNP [dm3] 3R_22370166_SNP [dm6]	C	T	2.416e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	12594411	X_12594411_INS [dm3] X_12700378_INS [dm6]	T	TAT	2.425e^-4	0.78	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3947989	X_3947989_SNP [dm3] X_4053956_SNP [dm6]	A	G	2.425e^-4	0.78	INTERGENIC
X	18143536	X_18143536_SNP [dm3] X_18249503_SNP [dm6]	G	A	2.431e^-4	0.78	INTERGENIC
2L	6530674	2L_6530674_SNP [dm3] 2L_6530674_SNP [dm6]	T	G	2.433e^-4	0.78	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
3R	19952709	3R_19952709_SNP [dm3] 3R_24126987_SNP [dm6]	T	C	2.436e^-4	0.78	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2L	5921735	2L_5921735_SNP [dm3] 2L_5921735_SNP [dm6]	G	A	2.437e^-4	0.78	UTR_3_PRIME bchs
3L	9479873	3L_9479873_SNP [dm3] 3L_9486773_SNP [dm6]	T	G	2.438e^-4	0.78	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10322850	2L_10322850_SNP [dm3] 2L_10322850_SNP [dm6]	A	T	2.438e^-4	0.78	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	6780868	2L_6780868_SNP [dm3] 2L_6780868_SNP [dm6]	A	T	2.441e^-4	0.78	INTRON nrv1
X	20927621	X_20927621_SNP [dm3] X_21056594_SNP [dm6]	A	G	2.442e^-4	0.78	INTRON bves	TF binding site mE1_TFBS_Trl
2L	18347862	2L_18347862_SNP [dm3] 2L_18347862_SNP [dm6]	G	T	2.442e^-4	0.78	INTRON Fas3
3R	15769546	3R_15769546_SNP [dm3] 3R_19943824_SNP [dm6]	T	A	2.451e^-4	0.78	INTRON Hs6st
2R	7136609	2R_7136609_DEL [dm3] 2R_11249104_DEL [dm6]	TACGCCCACACAAGCTTATT...	T	2.452e^-4	0.78	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
2R	17987460	2R_17987460_SNP [dm3] 2R_22099955_SNP [dm6]	G	T	2.460e^-4	0.78	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16585480	3R_16585480_SNP [dm3] 3R_20759758_SNP [dm6]	A	G	2.461e^-4	0.78	SYNONYMOUS_CODING CG31195 INTRON Syp
2R	15944793	2R_15944793_DEL [dm3] 2R_20057288_DEL [dm6]	TTCC	T	2.464e^-4	0.78	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24219230	3L_24219230_SNP [dm3] 3L_24226130_SNP [dm6]	C	A	2.464e^-4	0.78	INTRON Snap25
3R	25427721	3R_25427721_SNP [dm3] 3R_29601999_SNP [dm6]	G	A	2.472e^-4	0.78	INTRON alph
2L	15875037	2L_15875037_SNP [dm3] 2L_15875037_SNP [dm6]	T	C	2.473e^-4	0.78	INTERGENIC
3L	4045584	3L_4045584_SNP [dm3] 3L_4045584_SNP [dm6]	A	G	2.481e^-4	0.78	INTERGENIC
2L	20321764	2L_20321764_SNP [dm3] 2L_20321764_SNP [dm6]	T	G	2.484e^-4	0.78	INTRON spir	TF binding site mE1_TFBS_cad
2L	14869293	2L_14869293_SNP [dm3] 2L_14869293_SNP [dm6]	A	T	2.488e^-4	0.78	INTERGENIC
3R	18250760	3R_18250760_DEL [dm3] 3R_22425038_DEL [dm6]	CA	C	2.492e^-4	0.78	UPSTREAM pinta DOWNSTREAM CG13847 INTERGENIC
2R	14359261	2R_14359261_SNP [dm3] 2R_18471756_SNP [dm6]	T	A	2.495e^-4	0.78	INTRON CG30116
2R	17215435	2R_17215435_SNP [dm3] 2R_21327930_SNP [dm6]	C	T	2.501e^-4	0.78	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Me28S-A2589b DOWNSTREAM snoRNA:Psi28S-3316b & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14097097	2R_14097097_SNP [dm3] 2R_18209592_SNP [dm6]	C	T	2.510e^-4	0.78	DOWNSTREAM CG30114 EXON CR45147	TF binding site BDTNP1_TFBS_twi
2R	14099020	2R_14099020_SNP [dm3] 2R_18211515_SNP [dm6]	A	T	2.510e^-4	0.78	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8617651	3R_8617651_SNP [dm3] 3R_12791929_SNP [dm6]	T	A	2.515e^-4	0.78	INTERGENIC
3L	13469590	3L_13469590_SNP [dm3] 3L_13476490_SNP [dm6]	C	T	2.520e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10337561	3R_10337561_INS [dm3] 3R_14511839_INS [dm6]	T	TTGC	2.520e^-4	0.78	UTR_5_PRIME mRpL11 UPSTREAM HtrA2 DOWNSTREAM CG8461	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9510462	3R_9510462_INS [dm3] 3R_13684740_INS [dm6]	T	TG	2.526e^-4	0.78	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17748926	2R_17748926_SNP [dm3] 2R_21861421_SNP [dm6]	T	A	2.535e^-4	0.78	NON_SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1143147	3L_1143147_SNP [dm3] 3L_1143147_SNP [dm6]	G	A	2.545e^-4	0.78	INTRON bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	26471417	3R_26471417_SNP [dm3] 3R_30645695_SNP [dm6]	C	A	2.548e^-4	0.78	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
2R	5526431	2R_5526431_SNP [dm3] 2R_9638926_SNP [dm6]	G	T	2.551e^-4	0.78	INTRON Mmp2
2L	4139592	2L_4139592_SNP [dm3] 2L_4139592_SNP [dm6]	G	A	2.551e^-4	0.78	INTERGENIC
3L	11089459	3L_11089459_SNP [dm3] 3L_11096359_SNP [dm6]	A	C	2.557e^-4	0.78	UPSTREAM pncr011:3L & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19874288	2L_19874288_SNP [dm3] 2L_19874288_SNP [dm6]	C	T	2.561e^-4	0.78	INTRON sick
3R	25423330	3R_25423330_SNP [dm3] 3R_29597608_SNP [dm6]	T	C	2.567e^-4	0.78	INTRON alph
2L	5881675	2L_5881675_SNP [dm3] 2L_5881675_SNP [dm6]	C	T	2.571e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17382243	2R_17382243_DEL [dm3] 2R_21494738_DEL [dm6]	GG	G	2.572e^-4	0.78	INTRON Fkbp14
3R	16036527	3R_16036527_SNP [dm3] 3R_20210805_SNP [dm6]	C	T	2.574e^-4	0.78	INTRON Nlg4
3R	15976709	3R_15976709_SNP [dm3] 3R_20150987_SNP [dm6]	C	A	2.574e^-4	0.78	INTERGENIC
2L	4751316	2L_4751316_SNP [dm3] 2L_4751316_SNP [dm6]	G	A	2.580e^-4	0.78	INTRON CG15630
3R	23488509	3R_23488509_SNP [dm3] 3R_27662787_SNP [dm6]	G	A	2.586e^-4	0.78	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5504828	2L_5504828_SNP [dm3] 2L_5504828_SNP [dm6]	C	G	2.598e^-4	0.78	INTERGENIC
X	12260216	X_12260216_SNP [dm3] X_12366183_SNP [dm6]	T	A	2.599e^-4	0.78	INTERGENIC
3R	26471324	3R_26471324_SNP [dm3] 3R_30645602_SNP [dm6]	T	A	2.612e^-4	0.78	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	26471327	3R_26471327_SNP [dm3] 3R_30645605_SNP [dm6]	A	T	2.612e^-4	0.78	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	26471333	3R_26471333_SNP [dm3] 3R_30645611_SNP [dm6]	A	C	2.612e^-4	0.78	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	26471356	3R_26471356_SNP [dm3] 3R_30645634_SNP [dm6]	T	A	2.612e^-4	0.78	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	16801116	X_16801116_INS [dm3] X_16907083_INS [dm6]	C	CTCAAC	2.615e^-4	0.78	INTRON CR44754
3R	10845785	3R_10845785_SNP [dm3] 3R_15020063_SNP [dm6]	C	T	2.617e^-4	0.78	INTERGENIC
3R	23124771	3R_23124771_SNP [dm3] 3R_27299049_SNP [dm6]	C	A	2.622e^-4	0.78	INTRON CG3339
3R	23359627	3R_23359627_SNP [dm3] 3R_27533905_SNP [dm6]	T	C	2.627e^-4	0.78	UTR_3_PRIME CG12885	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14101578	X_14101578_SNP [dm3] X_14207545_SNP [dm6]	G	A	2.632e^-4	0.78	INTRON l_1_G0007 & 1 other
2L	7576517	2L_7576517_SNP [dm3] 2L_7576517_SNP [dm6]	C	T	2.637e^-4	0.78	START_GAINED RapGAP1 UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7509481	X_7509481_SNP [dm3] X_7615448_SNP [dm6]	C	T	2.644e^-4	0.78	INTRON ct
2L	17656099	2L_17656099_SNP [dm3] 2L_17656099_SNP [dm6]	T	A	2.645e^-4	0.78	INTRON CadN
2R	13799295	2R_13799295_INS [dm3] 2R_17911790_INS [dm6]	A	AGGGA	2.647e^-4	0.78	INTRON Elk
2R	14012774	2R_14012774_SNP [dm3] 2R_18125269_SNP [dm6]	G	T	2.656e^-4	0.78	INTRON stau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2848501	2L_2848501_SNP [dm3] 2L_2848501_SNP [dm6]	T	C	2.657e^-4	0.78	DOWNSTREAM CG3104 INTRON CG2983
3R	18195630	3R_18195630_SNP [dm3] 3R_22369908_SNP [dm6]	C	T	2.666e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	19410572	3L_19410572_SNP [dm3] 3L_19417472_SNP [dm6]	A	C	2.668e^-4	0.78	INTERGENIC
3L	5590595	3L_5590595_SNP [dm3] 3L_5597495_SNP [dm6]	T	G	2.675e^-4	0.78	DOWNSTREAM CG5150 INTERGENIC
2L	10183320	2L_10183320_SNP [dm3] 2L_10183320_SNP [dm6]	T	A	2.688e^-4	0.78	INTRON Sur
3R	10599625	3R_10599625_SNP [dm3] 3R_14773903_SNP [dm6]	G	A	2.691e^-4	0.78	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5495232	2L_5495232_SNP [dm3] 2L_5495232_SNP [dm6]	G	A	2.692e^-4	0.78	INTERGENIC
3L	11069707	3L_11069707_SNP [dm3] 3L_11076607_SNP [dm6]	T	G	2.693e^-4	0.78	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
3L	8469435	3L_8469435_SNP [dm3] 3L_8476335_SNP [dm6]	G	A	2.698e^-4	0.78	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1507255	2L_1507255_SNP [dm3] 2L_1507255_SNP [dm6]	A	T	2.701e^-4	0.78	INTERGENIC
3L	9985027	3L_9985027_SNP [dm3] 3L_9991927_SNP [dm6]	C	A	2.706e^-4	0.78	INTRON dpr6
3L	10520521	3L_10520521_SNP [dm3] 3L_10527421_SNP [dm6]	C	T	2.706e^-4	0.78	INTRON A2bp1
2L	1876734	2L_1876734_SNP [dm3] 2L_1876734_SNP [dm6]	C	T	2.706e^-4	0.78	INTRON CG31663
2L	10171960	2L_10171960_SNP [dm3] 2L_10171960_SNP [dm6]	C	A	2.707e^-4	0.78	UPSTREAM CG13137 INTRON CG44153
3L	1141603	3L_1141603_SNP [dm3] 3L_1141603_SNP [dm6]	T	A	2.711e^-4	0.78	UTR_3_PRIME bab2
3L	1141672	3L_1141672_DEL [dm3] 3L_1141672_DEL [dm6]	GTGTGTTTTACG...	G	2.711e^-4	0.78	UTR_3_PRIME bab2
3L	11089425	3L_11089425_SNP [dm3] 3L_11096325_SNP [dm6]	A	G	2.725e^-4	0.78	UPSTREAM pncr011:3L & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19357988	3L_19357988_SNP [dm3] 3L_19364888_SNP [dm6]	A	C	2.728e^-4	0.78	INTRON CG32206
X	11812857	X_11812857_SNP [dm3] X_11918824_SNP [dm6]	T	A	2.733e^-4	0.78	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3L	11807956	3L_11807956_SNP [dm3] 3L_11814856_SNP [dm6]	G	A	2.740e^-4	0.78	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14313839	2R_14313839_SNP [dm3] 2R_18426334_SNP [dm6]	G	A	2.741e^-4	0.78	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1138451	3L_1138451_DEL [dm3] 3L_1138451_DEL [dm6]	TGTCCTCCACCTCCAT...	T	2.754e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3740122	3L_3740122_SNP [dm3] 3L_3740122_SNP [dm6]	A	G	2.758e^-4	0.78	INTRON CG32264
3L	2360593	3L_2360593_SNP [dm3] 3L_2360593_SNP [dm6]	C	T	2.768e^-4	0.78	SYNONYMOUS_CODING CG13801
2R	17512007	2R_17512007_SNP [dm3] 2R_21624502_SNP [dm6]	A	T	2.770e^-4	0.78	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17513352	2R_17513352_SNP [dm3] 2R_21625847_SNP [dm6]	C	G	2.770e^-4	0.78	INTRON mahj	TF binding site mE1_TFBS_sens
2R	8909654	2R_8909654_SNP [dm3] 2R_13022149_SNP [dm6]	T	C	2.772e^-4	0.78	INTERGENIC
3L	10520143	3L_10520143_SNP [dm3] 3L_10527043_SNP [dm6]	A	T	2.782e^-4	0.78	INTRON A2bp1
3R	17718731	3R_17718731_SNP [dm3] 3R_21893009_SNP [dm6]	C	T	2.783e^-4	0.78	INTRON CG6678
3L	3895194	3L_3895194_SNP [dm3] 3L_3895194_SNP [dm6]	A	G	2.783e^-4	0.78	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie
2R	13571616	2R_13571616_DEL [dm3] 2R_17684111_DEL [dm6]	AACATTTAATAAAT...	G	2.787e^-4	0.78	UPSTREAM Sema-1b & 1 other INTRON HPS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14107548	2R_14107548_SNP [dm3] 2R_18220043_SNP [dm6]	A	G	2.796e^-4	0.78	INTERGENIC
3R	19972900	3R_19972900_SNP [dm3] 3R_24147178_SNP [dm6]	A	C	2.800e^-4	0.78	DOWNSTREAM Slimp INTRON Kal1
3L	11082142	3L_11082142_SNP [dm3] 3L_11089042_SNP [dm6]	C	T	2.813e^-4	0.78	INTRON JIL-1
2R	17989269	2R_17989269_SNP [dm3] 2R_22101764_SNP [dm6]	C	A	2.814e^-4	0.78	INTERGENIC
2L	5817551	2L_5817551_SNP [dm3] 2L_5817551_SNP [dm6]	G	A	2.815e^-4	0.78	DOWNSTREAM CG31644 INTERGENIC
3R	26335981	3R_26335981_SNP [dm3] 3R_30510259_SNP [dm6]	C	A	2.816e^-4	0.78	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG34041
2R	19299939	2R_19299939_DEL [dm3] 2R_23412416_DEL [dm6]	TTGCACCTT	T	2.817e^-4	0.78	UTR_3_PRIME CG9812
3L	11173194	3L_11173194_SNP [dm3] 3L_11180094_SNP [dm6]	A	G	2.822e^-4	0.78	INTRON GlcAT-P
3L	13470164	3L_13470164_SNP [dm3] 3L_13477064_SNP [dm6]	T	A	2.824e^-4	0.78	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10887369	2L_10887369_SNP [dm3] 2L_10887369_SNP [dm6]	G	A	2.826e^-4	0.78	DOWNSTREAM CG14071 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	16065917	2R_16065917_SNP [dm3] 2R_20178412_SNP [dm6]	T	A	2.826e^-4	0.78	INTERGENIC
3L	24181159	3L_24181159_SNP [dm3] 3L_24188059_SNP [dm6]	G	A	2.827e^-4	0.78	INTRON Snap25
2L	14910244	2L_14910244_SNP [dm3] 2L_14910244_SNP [dm6]	G	A	2.831e^-4	0.78	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4660748	2L_4660748_SNP [dm3] 2L_4660748_SNP [dm6]	T	C	2.837e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19246280	2L_19246280_SNP [dm3] 2L_19246280_SNP [dm6]	A	G	2.838e^-4	0.78	INTERGENIC
2L	15811422	2L_15811422_SNP [dm3] 2L_15811422_SNP [dm6]	A	G	2.845e^-4	0.78	SYNONYMOUS_CODING CG42876	TF binding site BDTNP1_TFBS_da
X	11840102	X_11840102_SNP [dm3] X_11946069_SNP [dm6]	A	G	2.852e^-4	0.78	INTRON cac
3L	13648578	3L_13648578_SNP [dm3] 3L_13655478_SNP [dm6]	A	G	2.853e^-4	0.78	INTRON bru-3
3R	13798202	3R_13798202_SNP [dm3] 3R_17972480_SNP [dm6]	A	G	2.853e^-4	0.78	INTRON cpo
3R	14994083	3R_14994083_SNP [dm3] 3R_19168361_SNP [dm6]	C	A	2.854e^-4	0.78	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	3755868	2L_3755868_SNP [dm3] 2L_3755868_SNP [dm6]	G	T	2.855e^-4	0.78	INTERGENIC
3R	19756057	3R_19756057_SNP [dm3] 3R_23930335_SNP [dm6]	A	G	2.858e^-4	0.78	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23419037	3R_23419037_SNP [dm3] 3R_27593315_SNP [dm6]	G	T	2.868e^-4	0.78	INTRON CG5639
2L	14318864	2L_14318864_SNP [dm3] 2L_14318864_SNP [dm6]	C	A	2.871e^-4	0.78	INTRON wb	TF binding site mE1_TFBS_bab1
3R	18195851	3R_18195851_DEL [dm3] 3R_22370129_DEL [dm6]	AG	A	2.875e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7450420	3L_7450420_SNP [dm3] 3L_7457320_SNP [dm6]	T	C	2.877e^-4	0.78	SYNONYMOUS_CODING ppk26
3L	1138053	3L_1138053_SNP [dm3] 3L_1138053_SNP [dm6]	G	A	2.885e^-4	0.78	INTERGENIC
X	9773397	X_9773397_SNP [dm3] X_9879364_SNP [dm6]	C	A	2.887e^-4	0.78	UPSTREAM CG9686 DOWNSTREAM CG1468 INTERGENIC
3L	12165626	3L_12165626_SNP [dm3] 3L_12172526_SNP [dm6]	A	G	2.889e^-4	0.78	INTRON Rh7
2L	3458969	2L_3458969_SNP [dm3] 2L_3458969_SNP [dm6]	T	C	2.909e^-4	0.78	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14115393	2R_14115393_SNP [dm3] 2R_18227888_SNP [dm6]	T	G	2.909e^-4	0.78	EXON CR45310 & 1 other
2L	17367056	2L_17367056_SNP [dm3] 2L_17367056_SNP [dm6]	C	T	2.910e^-4	0.78	DOWNSTREAM Lrch INTERGENIC
3L	10758649	3L_10758649_SNP [dm3] 3L_10765549_SNP [dm6]	T	A	2.911e^-4	0.78	INTERGENIC
3L	1147042	3L_1147042_SNP [dm3] 3L_1147042_SNP [dm6]	T	A	2.912e^-4	0.78	INTRON bab2
3L	12072897	3L_12072897_SNP [dm3] 3L_12079797_SNP [dm6]	T	C	2.914e^-4	0.78	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11523369	3L_11523369_SNP [dm3] 3L_11530269_SNP [dm6]	C	T	2.921e^-4	0.78	INTRON Mob2
X	10630526	X_10630526_SNP [dm3] X_10736493_SNP [dm6]	A	G	2.928e^-4	0.78	INTRON CG32676	TF binding site mE1_TFBS_Trl
3L	1141699	3L_1141699_INS [dm3] 3L_1141699_INS [dm6]	T	TTTTTT	2.934e^-4	0.78	UTR_3_PRIME bab2
3L	19415744	3L_19415744_SNP [dm3] 3L_19422644_SNP [dm6]	A	T	2.939e^-4	0.78	DOWNSTREAM CR32205 INTERGENIC
3R	13882091	3R_13882091_SNP [dm3] 3R_18056369_SNP [dm6]	C	T	2.947e^-4	0.78	INTERGENIC
2R	14359527	2R_14359527_SNP [dm3] 2R_18472022_SNP [dm6]	C	T	2.952e^-4	0.78	INTRON CG30116
X	2446249	X_2446249_SNP [dm3] X_2552216_SNP [dm6]	T	C	2.963e^-4	0.78	UTR_5_PRIME Pdfr	TF binding site mE1_TFBS_chinmo
3L	11695090	3L_11695090_SNP [dm3] 3L_11701990_SNP [dm6]	C	G	2.964e^-4	0.78	INTRON CG11658
3L	11808126	3L_11808126_SNP [dm3] 3L_11815026_SNP [dm6]	T	G	2.969e^-4	0.78	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18197580	3R_18197580_SNP [dm3] 3R_22371858_SNP [dm6]	C	T	2.976e^-4	0.78	SYNONYMOUS_CODING PyK UPSTREAM CG7069	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20315765	2L_20315765_SNP [dm3] 2L_20315765_SNP [dm6]	A	G	2.985e^-4	0.78	DOWNSTREAM CR43606 INTRON spir
3L	7450423	3L_7450423_SNP [dm3] 3L_7457323_SNP [dm6]	C	T	2.988e^-4	0.78	SYNONYMOUS_CODING ppk26
2R	14825630	2R_14825630_SNP [dm3] 2R_18938125_SNP [dm6]	T	C	2.988e^-4	0.78	INTRON sano
3L	7301002	3L_7301002_SNP [dm3] 3L_7307902_SNP [dm6]	C	A	2.996e^-4	0.78	INTRON unc-13-4A
3L	2360391	3L_2360391_SNP [dm3] 3L_2360391_SNP [dm6]	T	G	2.999e^-4	0.78	UPSTREAM CG13801 INTERGENIC
3R	9558211	3R_9558211_INS [dm3] 3R_13732489_INS [dm6]	G	GTGCA	3.001e^-4	0.78	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	22275225	2L_22275225_SNP [dm3] 2L_22275225_SNP [dm6]	G	A	3.007e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6959212	3L_6959212_SNP [dm3] 3L_6966112_SNP [dm6]	G	A	3.008e^-4	0.78	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3527851	2R_3527851_SNP [dm3] 2R_7640346_SNP [dm6]	T	C	3.010e^-4	0.78	SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad
2R	19611949	2R_19611949_SNP [dm3] 2R_23724426_SNP [dm6]	C	A	3.011e^-4	0.78	INTRON Sesn
2L	22227845	2L_22227845_SNP [dm3] 2L_22227845_SNP [dm6]	C	A	3.017e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15287648	2L_15287648_SNP [dm3] 2L_15287648_SNP [dm6]	C	A	3.024e^-4	0.78	INTERGENIC
3R	10690294	3R_10690294_SNP [dm3] 3R_14864572_SNP [dm6]	C	A	3.025e^-4	0.78	INTRON btsz
2R	9693773	2R_9693773_SNP [dm3] 2R_13806268_SNP [dm6]	A	C	3.029e^-4	0.78	UTR_5_PRIME stj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	19812098	3L_19812098_SNP [dm3] 3L_19818998_SNP [dm6]	T	C	3.038e^-4	0.78	UPSTREAM Deaf1 INTRON Deaf1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	17743581	3R_17743581_INS [dm3] 3R_21917859_INS [dm6]	A	ACAAATACTTATGAGTCCA...	3.039e^-4	0.78	INTERGENIC
2L	10003460	2L_10003460_SNP [dm3] 2L_10003460_SNP [dm6]	A	T	3.041e^-4	0.78	UPSTREAM SoYb & 2 others DOWNSTREAM CR44873 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2L	9917515	2L_9917515_SNP [dm3] 2L_9917515_SNP [dm6]	G	A	3.044e^-4	0.78	SYNONYMOUS_CODING CG5885 DOWNSTREAM yip2	TF binding site BDTNP1_TFBS_dl
3R	10873801	3R_10873801_SNP [dm3] 3R_15048079_SNP [dm6]	G	T	3.049e^-4	0.78	INTERGENIC
2L	16596185	2L_16596185_INS [dm3] 2L_16596185_INS [dm6]	C	CC	3.050e^-4	0.78	INTRON CG42389
2R	7342603	2R_7342603_SNP [dm3] 2R_11455098_SNP [dm6]	A	G	3.053e^-4	0.78	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7609597	3R_7609597_SNP [dm3] 3R_11783875_SNP [dm6]	T	A	3.056e^-4	0.78	SYNONYMOUS_CODING CG17360	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14388547	3R_14388547_SNP [dm3] 3R_18562825_SNP [dm6]	T	A	3.057e^-4	0.78	INTERGENIC
2L	19966514	2L_19966514_SNP [dm3] 2L_19966514_SNP [dm6]	C	T	3.061e^-4	0.78	UPSTREAM OS9 DOWNSTREAM CG10680 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18107995	2L_18107995_SNP [dm3] 2L_18107995_SNP [dm6]	T	A	3.063e^-4	0.78	INTERGENIC
3R	10696539	3R_10696539_SNP [dm3] 3R_14870817_SNP [dm6]	C	T	3.064e^-4	0.78	INTRON btsz
X	7512050	X_7512050_SNP [dm3] X_7618017_SNP [dm6]	C	T	3.065e^-4	0.78	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5383352	2L_5383352_SNP [dm3] 2L_5383352_SNP [dm6]	T	A	3.065e^-4	0.78	INTERGENIC
X	5054894	X_5054894_SNP [dm3] X_5160861_SNP [dm6]	C	T	3.078e^-4	0.78	INTRON rg & 1 other
2L	14222116	2L_14222116_SNP [dm3] 2L_14222116_SNP [dm6]	T	C	3.080e^-4	0.78	INTRON Dyrk2
X	20742169	X_20742169_SNP [dm3] X_20871142_SNP [dm6]	T	C	3.082e^-4	0.78	INTRON shakB
3R	15012707	3R_15012707_SNP [dm3] 3R_19186985_SNP [dm6]	C	T	3.084e^-4	0.78	INTRON CG31475	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15465905	2R_15465905_SNP [dm3] 2R_19578400_SNP [dm6]	A	G	3.093e^-4	0.78	INTRON sm
3L	14179369	3L_14179369_SNP [dm3] 3L_14186269_SNP [dm6]	T	A	3.093e^-4	0.78	UTR_3_PRIME nan	TF binding site mE1_TFBS_cad
3R	25316734	3R_25316734_SNP [dm3] 3R_29491012_SNP [dm6]	T	C	3.095e^-4	0.78	UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11090243	3L_11090243_MNP [dm3] 3L_11097143_MNP [dm6]	TGAG	CTCA	3.105e^-4	0.78	UPSTREAM CG6279 DOWNSTREAM CG6272 INTRON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15874883	2L_15874883_SNP [dm3] 2L_15874883_SNP [dm6]	C	A	3.115e^-4	0.78	INTERGENIC
3R	12226081	3R_12226081_SNP [dm3] 3R_16400359_SNP [dm6]	G	T	3.118e^-4	0.78	INTRON ss	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	11252621	3R_11252621_SNP [dm3] 3R_15426899_SNP [dm6]	G	A	3.120e^-4	0.78	UPSTREAM CG6118 INTRON CG6118
2L	4660844	2L_4660844_SNP [dm3] 2L_4660844_SNP [dm6]	A	G	3.127e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	22303030	3R_22303030_SNP [dm3] 3R_26477308_SNP [dm6]	G	A	3.131e^-4	0.78	SPLICE_SITE_REGION plum INTRON plum
3R	9822558	3R_9822558_SNP [dm3] 3R_13996836_SNP [dm6]	G	T	3.135e^-4	0.78	INTRON rdx
2R	12234658	2R_12234658_SNP [dm3] 2R_16347153_SNP [dm6]	T	C	3.137e^-4	0.78	SYNONYMOUS_CODING wcd DOWNSTREAM CG15710	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	17989270	2R_17989270_SNP [dm3] 2R_22101765_SNP [dm6]	T	G	3.137e^-4	0.78	INTERGENIC
2L	20135015	2L_20135015_SNP [dm3] 2L_20135015_SNP [dm6]	G	A	3.140e^-4	0.78	UPSTREAM CG10651 INTERGENIC
3R	19974117	3R_19974117_SNP [dm3] 3R_24148395_SNP [dm6]	T	C	3.142e^-4	0.78	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	19947983	2L_19947983_SNP [dm3] 2L_19947983_SNP [dm6]	T	G	3.152e^-4	0.78	INTRON sick
X	4333796	X_4333796_SNP [dm3] X_4439763_SNP [dm6]	G	A	3.157e^-4	0.78	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	12187884	3R_12187884_SNP [dm3] 3R_16362162_SNP [dm6]	G	C	3.159e^-4	0.78	INTRON CG14880	TF binding site mE1_TFBS_cad
2R	5075294	2R_5075294_SNP [dm3] 2R_9187789_SNP [dm6]	G	A	3.162e^-4	0.78	UTR_3_PRIME CG8026 & 1 other INTRON CG8026 & 1 other
3L	13648577	3L_13648577_SNP [dm3] 3L_13655477_SNP [dm6]	T	G	3.164e^-4	0.78	INTRON bru-3
2R	14359522	2R_14359522_SNP [dm3] 2R_18472017_SNP [dm6]	A	T	3.172e^-4	0.78	INTRON CG30116
2R	19370754	2R_19370754_SNP [dm3] 2R_23483231_SNP [dm6]	C	T	3.172e^-4	0.78	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	5986296	2L_5986296_SNP [dm3] 2L_5986296_SNP [dm6]	T	G	3.175e^-4	0.78	UPSTREAM ifc DOWNSTREAM eIF-4a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb
2R	15396652	2R_15396652_SNP [dm3] 2R_19509147_SNP [dm6]	A	C	3.176e^-4	0.78	SYNONYMOUS_CODING Ir56b UPSTREAM Ir56c
2R	10286581	2R_10286581_SNP [dm3] 2R_14399076_SNP [dm6]	A	T	3.185e^-4	0.78	INTERGENIC
X	15175032	X_15175032_SNP [dm3] X_15280999_SNP [dm6]	T	C	3.185e^-4	0.78	INTERGENIC
2L	4137763	2L_4137763_SNP [dm3] 2L_4137763_SNP [dm6]	A	G	3.187e^-4	0.78	INTERGENIC
3R	9558214	3R_9558214_SNP [dm3] 3R_13732492_SNP [dm6]	A	T	3.197e^-4	0.78	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18872855	X_18872855_DEL [dm3] X_18978822_DEL [dm6]	TT	T	3.199e^-4	0.78	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7289924	2R_7289924_SNP [dm3] 2R_11402419_SNP [dm6]	C	T	3.200e^-4	0.78	INTERGENIC
X	4699444	X_4699444_INS [dm3] X_4805411_INS [dm6]	A	AACCAGTCCCCCCCAATA...	3.201e^-4	0.78	UPSTREAM CG2861 DOWNSTREAM CR45516 INTERGENIC
2R	18373197	2R_18373197_SNP [dm3] 2R_22485692_SNP [dm6]	A	C	3.203e^-4	0.78	NON_SYNONYMOUS_CODING CG4554
3R	10527652	3R_10527652_SNP [dm3] 3R_14701930_SNP [dm6]	G	A	3.204e^-4	0.78	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12165617	3L_12165617_SNP [dm3] 3L_12172517_SNP [dm6]	C	G	3.216e^-4	0.78	INTRON Rh7
2L	1795609	2L_1795609_SNP [dm3] 2L_1795609_SNP [dm6]	A	C	3.216e^-4	0.78	UPSTREAM Gr22a INTERGENIC
3R	9877791	3R_9877791_INS [dm3] 3R_14052069_INS [dm6]	T	TTT	3.226e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18195902	3R_18195902_SNP [dm3] 3R_22370180_SNP [dm6]	T	G	3.231e^-4	0.78	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10301123	3R_10301123_SNP [dm3] 3R_14475401_SNP [dm6]	A	T	3.234e^-4	0.78	INTRON cv-c
3R	14240207	3R_14240207_SNP [dm3] 3R_18414485_SNP [dm6]	T	C	3.241e^-4	0.78	UTR_3_PRIME fru DOWNSTREAM fru
X	14637496	X_14637496_SNP [dm3] X_14743463_SNP [dm6]	A	G	3.248e^-4	0.78	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14912758	2L_14912758_SNP [dm3] 2L_14912758_SNP [dm6]	A	G	3.256e^-4	0.78	INTRON CG42313
3L	14185189	3L_14185189_SNP [dm3] 3L_14192089_SNP [dm6]	A	G	3.260e^-4	0.78	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	14716995	2R_14716995_SNP [dm3] 2R_18829490_SNP [dm6]	A	T	3.261e^-4	0.78	UTR_5_PRIME CG15097 UPSTREAM CG15082
X	1425011	X_1425011_SNP [dm3] X_1530978_SNP [dm6]	G	A	3.263e^-4	0.78	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	14829525	2R_14829525_SNP [dm3] 2R_18942020_SNP [dm6]	C	T	3.266e^-4	0.78	INTRON sano
2R	14828732	2R_14828732_SNP [dm3] 2R_18941227_SNP [dm6]	C	A	3.268e^-4	0.78	INTRON sano
3R	14818520	3R_14818520_SNP [dm3] 3R_18992798_SNP [dm6]	G	T	3.269e^-4	0.78	INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	16040012	3L_16040012_SNP [dm3] 3L_16046912_SNP [dm6]	A	T	3.270e^-4	0.78	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18347703	2L_18347703_SNP [dm3] 2L_18347703_SNP [dm6]	A	T	3.272e^-4	0.78	INTRON Fas3
2R	17512408	2R_17512408_SNP [dm3] 2R_21624903_SNP [dm6]	A	C	3.274e^-4	0.78	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	1684231	X_1684231_SNP [dm3] X_1790198_SNP [dm6]	T	C	3.277e^-4	0.78	SYNONYMOUS_CODING CG32806 INTRON CG42666
3R	25427028	3R_25427028_SNP [dm3] 3R_29601306_SNP [dm6]	T	C	3.284e^-4	0.78	UPSTREAM CG7568 INTRON alph
3L	12996594	3L_12996594_SNP [dm3] 3L_13003494_SNP [dm6]	G	A	3.289e^-4	0.78	INTERGENIC
X	8907725	X_8907725_SNP [dm3] X_9013692_SNP [dm6]	C	A	3.297e^-4	0.78	UTR_5_PRIME rdgA INTRON rdgA & 1 other
2L	18323688	2L_18323688_SNP [dm3] 2L_18323688_SNP [dm6]	C	T	3.300e^-4	0.78	INTRON Fas3
2R	18373196	2R_18373196_SNP [dm3] 2R_22485691_SNP [dm6]	G	T	3.302e^-4	0.78	SYNONYMOUS_CODING CG4554
2R	9695178	2R_9695178_SNP [dm3] 2R_13807673_SNP [dm6]	T	G	3.305e^-4	0.78	INTRON stj
2L	9161684	2L_9161684_SNP [dm3] 2L_9161684_SNP [dm6]	C	T	3.306e^-4	0.78	SYNONYMOUS_CODING CG32982
X	17084772	X_17084772_SNP [dm3] X_17190739_SNP [dm6]	G	T	3.308e^-4	0.78	INTRON baz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19397337	3L_19397337_SNP [dm3] 3L_19404237_SNP [dm6]	A	G	3.310e^-4	0.78	INTRON CG32206
2L	15928770	2L_15928770_SNP [dm3] 2L_15928770_SNP [dm6]	A	G	3.314e^-4	0.78	INTRON beat-Ib
2R	18146489	2R_18146489_SNP [dm3] 2R_22258984_SNP [dm6]	G	A	3.317e^-4	0.78	INTRON dve
2R	14113702	2R_14113702_SNP [dm3] 2R_18226197_SNP [dm6]	G	A	3.317e^-4	0.78	UPSTREAM CR45310 INTERGENIC
X	9100379	X_9100379_SNP [dm3] X_9206346_SNP [dm6]	A	T	3.321e^-4	0.78	UTR_3_PRIME CG12119
3R	15976619	3R_15976619_SNP [dm3] 3R_20150897_SNP [dm6]	T	C	3.322e^-4	0.78	INTERGENIC
2R	18585958	2R_18585958_SNP [dm3] 2R_22698453_SNP [dm6]	A	G	3.322e^-4	0.78	SPLICE_SITE_REGION robo SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1139314	3L_1139314_SNP [dm3] 3L_1139314_SNP [dm6]	A	T	3.324e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12243356	3L_12243356_SNP [dm3] 3L_12250256_SNP [dm6]	G	A	3.324e^-4	0.78	INTRON app
3R	2183992	3R_2183992_SNP [dm3] 3R_6358270_SNP [dm6]	A	G	3.325e^-4	0.78	NON_SYNONYMOUS_CODING Pak INTRON Pak	TF binding site mE1_TFBS_cad
X	12259003	X_12259003_SNP [dm3] X_12364970_SNP [dm6]	G	A	3.325e^-4	0.78	INTERGENIC
3L	1137781	3L_1137781_SNP [dm3] 3L_1137781_SNP [dm6]	A	C	3.328e^-4	0.78	INTERGENIC
3L	12918533	3L_12918533_SNP [dm3] 3L_12925433_SNP [dm6]	A	T	3.328e^-4	0.78	INTERGENIC
X	21916339	X_21916339_SNP [dm3] X_22514503_SNP [dm6]	A	C	3.335e^-4	0.78	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
3L	5469875	3L_5469875_SNP [dm3] 3L_5476775_SNP [dm6]	A	G	3.347e^-4	0.78	INTERGENIC
3R	8414860	3R_8414860_SNP [dm3] 3R_12589138_SNP [dm6]	T	C	3.352e^-4	0.78	INTRON Octbeta2R	transposable element FlyBase
2L	19410348	2L_19410348_SNP [dm3] 2L_19410348_SNP [dm6]	T	G	3.359e^-4	0.78	SYNONYMOUS_CODING Pax
3L	8327795	3L_8327795_SNP [dm3] 3L_8334695_SNP [dm6]	C	G	3.360e^-4	0.78	INTERGENIC
3L	19660549	3L_19660549_SNP [dm3] 3L_19667449_SNP [dm6]	T	A	3.371e^-4	0.78	INTERGENIC
3R	18250155	3R_18250155_SNP [dm3] 3R_22424433_SNP [dm6]	T	C	3.377e^-4	0.78	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
3R	14681707	3R_14681707_SNP [dm3] 3R_18855985_SNP [dm6]	G	T	3.381e^-4	0.78	INTERGENIC
3R	26078636	3R_26078636_SNP [dm3] 3R_30252914_SNP [dm6]	G	T	3.381e^-4	0.78	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7509242	X_7509242_DEL [dm3] X_7615209_DEL [dm6]	AGCATGT	A	3.382e^-4	0.78	INTRON ct
2L	17375336	2L_17375336_SNP [dm3] 2L_17375336_SNP [dm6]	T	A	3.385e^-4	0.78	INTRON Lrch	TF binding site BDTNP1_TFBS_da
2R	4192804	2R_4192804_DEL [dm3] 2R_8305299_DEL [dm6]	TCA	T	3.390e^-4	0.78	DOWNSTREAM CR44447 INTERGENIC
3L	18958448	3L_18958448_SNP [dm3] 3L_18965348_SNP [dm6]	T	A	3.398e^-4	0.78	INTERGENIC
3R	17087635	3R_17087635_SNP [dm3] 3R_21261913_SNP [dm6]	G	T	3.402e^-4	0.78	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8911030	3L_8911030_SNP [dm3] 3L_8917930_SNP [dm6]	C	T	3.411e^-4	0.78	INTRON Tsp66E
X	12259043	X_12259043_SNP [dm3] X_12365010_SNP [dm6]	G	A	3.414e^-4	0.78	INTERGENIC
X	16775102	X_16775102_SNP [dm3] X_16881069_SNP [dm6]	T	C	3.418e^-4	0.78	UPSTREAM CG4872 INTERGENIC
2L	16526884	2L_16526884_SNP [dm3] 2L_16526884_SNP [dm6]	T	C	3.419e^-4	0.78	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	18114032	2L_18114032_SNP [dm3] 2L_18114032_SNP [dm6]	G	C	3.420e^-4	0.78	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	18642324	2R_18642324_SNP [dm3] 2R_22754819_SNP [dm6]	G	A	3.428e^-4	0.78	UPSTREAM CG13526 INTRON CG42260
3R	19860072	3R_19860072_SNP [dm3] 3R_24034350_SNP [dm6]	T	A	3.430e^-4	0.78	DOWNSTREAM Miro & 1 other INTERGENIC
3L	17779007	3L_17779007_SNP [dm3] 3L_17785907_SNP [dm6]	A	T	3.438e^-4	0.78	UPSTREAM CR44668 INTERGENIC
2R	6024166	2R_6024166_SNP [dm3] 2R_10136661_SNP [dm6]	G	A	3.440e^-4	0.78	SYNONYMOUS_CODING gem UPSTREAM CG12917
3R	15170532	3R_15170532_SNP [dm3] 3R_19344810_SNP [dm6]	A	G	3.441e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	18968936	3L_18968936_SNP [dm3] 3L_18975836_SNP [dm6]	A	G	3.444e^-4	0.78	INTERGENIC
3R	10864631	3R_10864631_SNP [dm3] 3R_15038909_SNP [dm6]	G	A	3.448e^-4	0.78	DOWNSTREAM RpL10Aa EXON CR44944	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10301121	3R_10301121_SNP [dm3] 3R_14475399_SNP [dm6]	G	A	3.449e^-4	0.78	INTRON cv-c
2R	6279401	2R_6279401_SNP [dm3] 2R_10391896_SNP [dm6]	C	T	3.457e^-4	0.78	INTRON CG42732
X	8003242	X_8003242_SNP [dm3] X_8109209_SNP [dm6]	T	A	3.459e^-4	0.78	INTRON Gclc
3R	2716528	3R_2716528_SNP [dm3] 3R_6890806_SNP [dm6]	A	T	3.459e^-4	0.78	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	10755487	3L_10755487_SNP [dm3] 3L_10762387_SNP [dm6]	A	G	3.459e^-4	0.78	INTERGENIC
X	9453737	X_9453737_SNP [dm3] X_9559704_SNP [dm6]	G	A	3.468e^-4	0.78	SYNONYMOUS_CODING Cubn
3R	25312146	3R_25312146_SNP [dm3] 3R_29486424_SNP [dm6]	C	T	3.469e^-4	0.78	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
2L	1795652	2L_1795652_SNP [dm3] 2L_1795652_SNP [dm6]	G	A	3.472e^-4	0.78	UPSTREAM Gr22a INTERGENIC
3L	1032042	3L_1032042_SNP [dm3] 3L_1032042_SNP [dm6]	T	A	3.474e^-4	0.78	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14119480	3L_14119480_SNP [dm3] 3L_14126380_SNP [dm6]	A	T	3.475e^-4	0.78	INTRON Sox21b
2L	4660701	2L_4660701_SNP [dm3] 2L_4660701_SNP [dm6]	A	C	3.480e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16042677	3R_16042677_SNP [dm3] 3R_20216955_SNP [dm6]	G	C	3.487e^-4	0.78	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18347692	2L_18347692_SNP [dm3] 2L_18347692_SNP [dm6]	T	G	3.488e^-4	0.78	INTRON Fas3
3R	10690291	3R_10690291_SNP [dm3] 3R_14864569_SNP [dm6]	G	C	3.488e^-4	0.78	INTRON btsz
2L	10202495	2L_10202495_SNP [dm3] 2L_10202495_SNP [dm6]	G	A	3.490e^-4	0.78	DOWNSTREAM CG34159 & 1 other INTERGENIC
X	19037821	X_19037821_SNP [dm3] X_19143788_SNP [dm6]	A	C	3.494e^-4	0.78	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_sna
2L	20806416	2L_20806416_SNP [dm3] 2L_20806416_SNP [dm6]	C	T	3.495e^-4	0.78	INTRON CG9328
2R	13130908	2R_13130908_SNP [dm3] 2R_17243403_SNP [dm6]	T	C	3.502e^-4	0.78	INTRON mbl
3L	17490778	3L_17490778_SNP [dm3] 3L_17497678_SNP [dm6]	A	G	3.513e^-4	0.78	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	12195374	2L_12195374_SNP [dm3] 2L_12195374_SNP [dm6]	A	C	3.520e^-4	0.78	INTRON aret
X	4742685	X_4742685_SNP [dm3] X_4848652_SNP [dm6]	C	T	3.524e^-4	0.78	INTRON CG42594
3L	11692740	3L_11692740_SNP [dm3] 3L_11699640_SNP [dm6]	C	T	3.527e^-4	0.78	UTR_3_PRIME CG11658 UPSTREAM CG6053 DOWNSTREAM CG11658
2R	6931639	2R_6931639_SNP [dm3] 2R_11044134_SNP [dm6]	T	C	3.529e^-4	0.78	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12177751	2L_12177751_SNP [dm3] 2L_12177751_SNP [dm6]	A	G	3.534e^-4	0.78	UTR_5_PRIME atilla INTRON aret	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8615133	2R_8615133_INS [dm3] 2R_12727628_INS [dm6]	A	AG	3.535e^-4	0.78	INTRON CG42663
2R	17926849	2R_17926849_SNP [dm3] 2R_22039344_SNP [dm6]	G	A	3.536e^-4	0.78	INTRON CG34370
2L	15918357	2L_15918357_SNP [dm3] 2L_15918357_SNP [dm6]	A	G	3.553e^-4	0.78	DOWNSTREAM CG13244 INTRON beat-Ib
3R	13798230	3R_13798230_DEL [dm3] 3R_17972508_DEL [dm6]	GCGTAAACAG	G	3.553e^-4	0.78	INTRON cpo
2L	10096702	2L_10096702_SNP [dm3] 2L_10096702_SNP [dm6]	C	G	3.555e^-4	0.78	INTRON CG44153 & 1 other
2L	10096703	2L_10096703_SNP [dm3] 2L_10096703_SNP [dm6]	C	A	3.555e^-4	0.78	INTRON CG44153 & 1 other
3L	10358972	3L_10358972_SNP [dm3] 3L_10365872_SNP [dm6]	T	C	3.564e^-4	0.78	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	19386332	3L_19386332_DEL [dm3] 3L_19393232_DEL [dm6]	TTCAGT	T	3.568e^-4	0.78	INTRON CG32206
2R	1574723	2R_1574723_DEL [dm3] 2R_5687218_DEL [dm6]	TT	T	3.578e^-4	0.78	INTRON scaf
2L	14906591	2L_14906591_SNP [dm3] 2L_14906591_SNP [dm6]	A	G	3.580e^-4	0.78	DOWNSTREAM CG42313 INTERGENIC
2L	6485630	2L_6485630_SNP [dm3] 2L_6485630_SNP [dm6]	A	G	3.588e^-4	0.78	NON_SYNONYMOUS_CODING DLP
X	3204172	X_3204172_INS [dm3] X_3310139_INS [dm6]	C	CCACGCCCCTCCAC...	3.591e^-4	0.78	INTRON dnc
3R	23429650	3R_23429650_SNP [dm3] 3R_27603928_SNP [dm6]	C	T	3.595e^-4	0.78	INTRON dsd
2L	5383350	2L_5383350_INS [dm3] 2L_5383350_INS [dm6]	T	TA	3.599e^-4	0.78	INTERGENIC
2R	13255757	2R_13255757_SNP [dm3] 2R_17368252_SNP [dm6]	A	T	3.603e^-4	0.78	INTRON mbl	TF binding site BDTNP1_TFBS_dl
3L	8898347	3L_8898347_SNP [dm3] 3L_8905247_SNP [dm6]	A	G	3.610e^-4	0.78	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
3R	10310873	3R_10310873_SNP [dm3] 3R_14485151_SNP [dm6]	A	G	3.612e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17247051	3R_17247051_SNP [dm3] 3R_21421329_SNP [dm6]	C	A	3.613e^-4	0.78	INTRON lbl	TF binding site mE1_TFBS_cad
2L	14900326	2L_14900326_SNP [dm3] 2L_14900326_SNP [dm6]	G	C	3.624e^-4	0.78	INTERGENIC
2R	19371674	2R_19371674_SNP [dm3] 2R_23484151_SNP [dm6]	C	T	3.626e^-4	0.78	INTRON CG43795
2R	3307134	2R_3307134_SNP [dm3] 2R_7419629_SNP [dm6]	G	T	3.627e^-4	0.78	START_GAINED so UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17887729	2R_17887729_SNP [dm3] 2R_22000224_SNP [dm6]	G	A	3.628e^-4	0.78	INTRON CG34370
3R	21264028	3R_21264028_SNP [dm3] 3R_25438306_SNP [dm6]	A	T	3.631e^-4	0.78	INTRON Fur1
3R	19974237	3R_19974237_SNP [dm3] 3R_24148515_SNP [dm6]	C	T	3.634e^-4	0.78	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3R	16576636	3R_16576636_DEL [dm3] 3R_20750914_DEL [dm6]	TTT	T	3.636e^-4	0.78	INTRON CG42322
2L	11928786	2L_11928786_SNP [dm3] 2L_11928786_SNP [dm6]	C	G	3.637e^-4	0.78	UPSTREAM Pde1c INTERGENIC	TF binding site mE1_TFBS_inv
2L	20600951	2L_20600951_SNP [dm3] 2L_20600951_SNP [dm6]	C	T	3.639e^-4	0.78	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12361422	2R_12361422_SNP [dm3] 2R_16473917_SNP [dm6]	A	T	3.643e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1305455	3L_1305455_SNP [dm3] 3L_1305455_SNP [dm6]	G	C	3.654e^-4	0.78	UTR_3_PRIME CG2277 DOWNSTREAM CG9149
3L	8467042	3L_8467042_SNP [dm3] 3L_8473942_SNP [dm6]	G	T	3.659e^-4	0.78	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4468151	3L_4468151_SNP [dm3] 3L_4468151_SNP [dm6]	A	C	3.659e^-4	0.78	INTERGENIC
2L	6539225	2L_6539225_SNP [dm3] 2L_6539225_SNP [dm6]	A	T	3.661e^-4	0.78	INTRON eya
3L	11808109	3L_11808109_SNP [dm3] 3L_11815009_SNP [dm6]	A	T	3.662e^-4	0.78	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18412054	3R_18412054_SNP [dm3] 3R_22586332_SNP [dm6]	G	A	3.665e^-4	0.78	SYNONYMOUS_CODING btn DOWNSTREAM CG6937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18412111	3R_18412111_SNP [dm3] 3R_22586389_SNP [dm6]	T	A	3.665e^-4	0.78	NON_SYNONYMOUS_CODING btn DOWNSTREAM CG6937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15311952	2L_15311952_SNP [dm3] 2L_15311952_SNP [dm6]	A	C	3.671e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
2R	11811658	2R_11811658_SNP [dm3] 2R_15924153_SNP [dm6]	G	A	3.675e^-4	0.78	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2R	19107618	2R_19107618_DEL [dm3] 2R_23220095_DEL [dm6]	GG	G	3.676e^-4	0.78	INTERGENIC
3L	11090240	3L_11090240_SNP [dm3] 3L_11097140_SNP [dm6]	T	G	3.677e^-4	0.78	UPSTREAM CG6279 DOWNSTREAM CG6272 INTRON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15868834	2L_15868834_SNP [dm3] 2L_15868834_SNP [dm6]	T	A	3.685e^-4	0.78	INTERGENIC
X	14502368	X_14502368_SNP [dm3] X_14608335_SNP [dm6]	C	A	3.696e^-4	0.78	INTRON NetA
3L	16052940	3L_16052940_SNP [dm3] 3L_16059840_SNP [dm6]	G	A	3.697e^-4	0.78	INTRON Mbs
3R	12187600	3R_12187600_SNP [dm3] 3R_16361878_SNP [dm6]	C	T	3.702e^-4	0.78	NON_SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10450715	X_10450715_SNP [dm3] X_10556682_SNP [dm6]	C	T	3.703e^-4	0.78	UTR_5_PRIME spri INTRON spri
2L	14523885	2L_14523885_DEL [dm3] 2L_14523885_DEL [dm6]	ATTTTTAATTT...	A	3.705e^-4	0.78	UPSTREAM CG33648 INTERGENIC
3L	14118588	3L_14118588_SNP [dm3] 3L_14125488_SNP [dm6]	G	C	3.706e^-4	0.78	SYNONYMOUS_CODING Sox21b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15711106	2R_15711106_SNP [dm3] 2R_19823601_SNP [dm6]	G	A	3.711e^-4	0.78	INTERGENIC
2L	10181637	2L_10181637_SNP [dm3] 2L_10181637_SNP [dm6]	C	T	3.721e^-4	0.78	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10170198	2L_10170198_SNP [dm3] 2L_10170198_SNP [dm6]	A	T	3.726e^-4	0.78	INTRON CG44153
X	15175017	X_15175017_SNP [dm3] X_15280984_SNP [dm6]	T	G	3.730e^-4	0.78	INTERGENIC
3R	11165004	3R_11165004_SNP [dm3] 3R_15339282_SNP [dm6]	C	A	3.745e^-4	0.78	DOWNSTREAM Sra-1 INTRON CG6218	TF binding site mE1_TFBS_sens
2L	9304100	2L_9304100_SNP [dm3] 2L_9304100_SNP [dm6]	A	G	3.761e^-4	0.78	DOWNSTREAM CR42844 INTERGENIC
2L	508808	2L_508808_SNP [dm3] 2L_508808_SNP [dm6]	G	T	3.762e^-4	0.78	INTRON ush
X	14637497	X_14637497_SNP [dm3] X_14743464_SNP [dm6]	A	G	3.763e^-4	0.78	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3462592	3R_3462592_SNP [dm3] 3R_7636870_SNP [dm6]	A	G	3.765e^-4	0.78	INTRON CG34127
X	7511324	X_7511324_SNP [dm3] X_7617291_SNP [dm6]	G	C	3.767e^-4	0.78	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10271378	2R_10271378_SNP [dm3] 2R_14383873_SNP [dm6]	G	A	3.772e^-4	0.78	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da
3L	24182401	3L_24182401_SNP [dm3] 3L_24189301_SNP [dm6]	A	C	3.775e^-4	0.78	INTRON Snap25
X	20929572	X_20929572_SNP [dm3] X_21058545_SNP [dm6]	A	T	3.779e^-4	0.78	INTRON bves
3L	13049594	3L_13049594_SNP [dm3] 3L_13056494_SNP [dm6]	G	A	3.785e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3438347	3R_3438347_SNP [dm3] 3R_7612625_SNP [dm6]	A	T	3.788e^-4	0.78	INTRON CG34127
X	5921906	X_5921906_SNP [dm3] X_6027873_SNP [dm6]	T	C	3.795e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13470026	3L_13470026_SNP [dm3] 3L_13476926_SNP [dm6]	A	T	3.799e^-4	0.78	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17836771	2R_17836771_SNP [dm3] 2R_21949266_SNP [dm6]	T	C	3.802e^-4	0.78	INTERGENIC
3R	10412350	3R_10412350_SNP [dm3] 3R_14586628_SNP [dm6]	A	G	3.809e^-4	0.78	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22076409	3R_22076409_SNP [dm3] 3R_26250687_SNP [dm6]	A	T	3.809e^-4	0.78	INTRON CR42745
3L	1138918	3L_1138918_SNP [dm3] 3L_1138918_SNP [dm6]	C	T	3.811e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	2716195	3R_2716195_SNP [dm3] 3R_6890473_SNP [dm6]	A	T	3.823e^-4	0.78	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	4441984	3R_4441984_SNP [dm3] 3R_8616262_SNP [dm6]	G	A	3.825e^-4	0.78	INTRON 5-HT2B
2L	16465012	2L_16465012_SNP [dm3] 2L_16465012_SNP [dm6]	T	A	3.828e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs
2L	15818744	2L_15818744_SNP [dm3] 2L_15818744_SNP [dm6]	T	A	3.849e^-4	0.78	INTERGENIC
2R	15466047	2R_15466047_SNP [dm3] 2R_19578542_SNP [dm6]	C	G	3.851e^-4	0.78	INTRON sm
3L	13049597	3L_13049597_SNP [dm3] 3L_13056497_SNP [dm6]	A	G	3.854e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11812959	X_11812959_SNP [dm3] X_11918926_SNP [dm6]	A	T	3.857e^-4	0.78	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
2L	20137412	2L_20137412_DEL [dm3] 2L_20137412_DEL [dm6]	ACCAACATGCCGTGA...	A	3.863e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15442359	2L_15442359_SNP [dm3] 2L_15442359_SNP [dm6]	T	G	3.873e^-4	0.78	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26367623	3R_26367623_SNP [dm3] 3R_30541901_SNP [dm6]	T	A	3.874e^-4	0.78	INTRON tmod
2L	9490945	2L_9490945_SNP [dm3] 2L_9490945_SNP [dm6]	A	T	3.879e^-4	0.78	DOWNSTREAM Gdi INTERGENIC
2R	14103866	2R_14103866_SNP [dm3] 2R_18216361_SNP [dm6]	A	G	3.879e^-4	0.78	INTERGENIC
3R	14747790	3R_14747790_SNP [dm3] 3R_18922068_SNP [dm6]	T	C	3.880e^-4	0.78	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	18414542	3R_18414542_SNP [dm3] 3R_22588820_SNP [dm6]	G	A	3.886e^-4	0.78	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18250854	3R_18250854_SNP [dm3] 3R_22425132_SNP [dm6]	T	A	3.894e^-4	0.78	UPSTREAM pinta DOWNSTREAM CG13847 INTERGENIC
2R	16430354	2R_16430354_SNP [dm3] 2R_20542849_SNP [dm6]	A	T	3.895e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16400065	3R_16400065_SNP [dm3] 3R_20574343_SNP [dm6]	G	A	3.896e^-4	0.78	UPSTREAM snoRNA:Psi18S-301 DOWNSTREAM TFAM INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	7354047	3R_7354047_SNP [dm3] 3R_11528325_SNP [dm6]	C	A	3.897e^-4	0.78	INTERGENIC
3L	11075283	3L_11075283_SNP [dm3] 3L_11082183_SNP [dm6]	G	A	3.901e^-4	0.78	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad
3L	13321683	3L_13321683_SNP [dm3] 3L_13328583_SNP [dm6]	C	G	3.901e^-4	0.78	UPSTREAM CG14113 INTERGENIC
2R	16356531	2R_16356531_SNP [dm3] 2R_20469026_SNP [dm6]	G	T	3.902e^-4	0.78	INTRON CG12484
2R	14107496	2R_14107496_SNP [dm3] 2R_18219991_SNP [dm6]	A	G	3.909e^-4	0.78	INTERGENIC
2R	10390534	2R_10390534_SNP [dm3] 2R_14503029_SNP [dm6]	G	C	3.911e^-4	0.78	SYNONYMOUS_CODING Cpsf160 UPSTREAM Asx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	5714110	X_5714110_SNP [dm3] X_5820077_SNP [dm6]	T	C	3.916e^-4	0.78	INTRON CG15765
3R	19952735	3R_19952735_SNP [dm3] 3R_24127013_SNP [dm6]	T	A	3.919e^-4	0.78	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2L	10068295	2L_10068295_SNP [dm3] 2L_10068295_SNP [dm6]	C	G	3.924e^-4	0.78	SYNONYMOUS_CODING CG44153
2L	2462646	2L_2462646_SNP [dm3] 2L_2462646_SNP [dm6]	T	A	3.928e^-4	0.78	INTRON tRNA:Y1:22Fa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	21264022	3R_21264022_SNP [dm3] 3R_25438300_SNP [dm6]	A	C	3.930e^-4	0.78	INTRON Fur1
2L	19175348	2L_19175348_SNP [dm3] 2L_19175348_SNP [dm6]	G	A	3.939e^-4	0.78	UTR_3_PRIME brat INTRON brat
3L	7200472	3L_7200472_SNP [dm3] 3L_7207372_SNP [dm6]	G	A	3.939e^-4	0.78	INTERGENIC
3R	13801216	3R_13801216_SNP [dm3] 3R_17975494_SNP [dm6]	C	T	3.945e^-4	0.78	INTRON cpo
3R	10384150	3R_10384150_SNP [dm3] 3R_14558428_SNP [dm6]	T	C	3.948e^-4	0.78	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11303019	3L_11303019_SNP [dm3] 3L_11309919_SNP [dm6]	G	T	3.957e^-4	0.78	INTERGENIC
2R	18654758	2R_18654758_SNP [dm3] 2R_22767253_SNP [dm6]	T	G	3.959e^-4	0.78	INTRON CG42260
3L	12995705	3L_12995705_SNP [dm3] 3L_13002605_SNP [dm6]	A	C	3.964e^-4	0.78	INTERGENIC
3L	6952710	3L_6952710_SNP [dm3] 3L_6959610_SNP [dm6]	C	T	3.971e^-4	0.78	UTR_3_PRIME sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo
3L	5494071	3L_5494071_SNP [dm3] 3L_5500971_SNP [dm6]	A	G	3.971e^-4	0.78	DOWNSTREAM CR44518 & 1 other INTERGENIC
2R	13803207	2R_13803207_SNP [dm3] 2R_17915702_SNP [dm6]	C	A	3.972e^-4	0.78	INTRON Elk
2R	6933322	2R_6933322_SNP [dm3] 2R_11045817_SNP [dm6]	C	T	3.973e^-4	0.78	INTRON luna
2L	17780743	2L_17780743_SNP [dm3] 2L_17780743_SNP [dm6]	G	A	3.980e^-4	0.78	INTERGENIC
3L	2602749	3L_2602749_SNP [dm3] 3L_2602749_SNP [dm6]	T	G	3.983e^-4	0.78	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11086877	3L_11086877_SNP [dm3] 3L_11093777_SNP [dm6]	G	T	3.992e^-4	0.78	NON_SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	3217056	2R_3217056_SNP [dm3] 2R_7329551_SNP [dm6]	T	C	3.993e^-4	0.78	SYNONYMOUS_CODING Dscam1 INTRON CR45129
X	15175019	X_15175019_SNP [dm3] X_15280986_SNP [dm6]	T	A	4.006e^-4	0.78	INTERGENIC
3L	13625689	3L_13625689_SNP [dm3] 3L_13632589_SNP [dm6]	T	A	4.019e^-4	0.78	INTRON bru-3
2L	11854276	2L_11854276_SNP [dm3] 2L_11854276_SNP [dm6]	T	C	4.025e^-4	0.78	DOWNSTREAM CG42751 INTRON Pde1c
2L	16051667	2L_16051667_SNP [dm3] 2L_16051667_SNP [dm6]	C	T	4.030e^-4	0.78	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2R	3215723	2R_3215723_SNP [dm3] 2R_7328218_SNP [dm6]	C	G	4.034e^-4	0.78	INTRON CR45129 & 1 other
2L	16456836	2L_16456836_SNP [dm3] 2L_16456836_SNP [dm6]	G	T	4.044e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs
2L	6671666	2L_6671666_INS [dm3] 2L_6671666_INS [dm6]	G	GG	4.051e^-4	0.78	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	24179099	3L_24179099_SNP [dm3] 3L_24185999_SNP [dm6]	A	C	4.063e^-4	0.78	INTRON Snap25
2L	17636637	2L_17636637_SNP [dm3] 2L_17636637_SNP [dm6]	G	A	4.070e^-4	0.78	INTERGENIC
2R	17989281	2R_17989281_SNP [dm3] 2R_22101776_SNP [dm6]	T	A	4.073e^-4	0.78	INTERGENIC
2L	17783828	2L_17783828_SNP [dm3] 2L_17783828_SNP [dm6]	A	G	4.074e^-4	0.78	INTERGENIC
2R	18539050	2R_18539050_SNP [dm3] 2R_22651545_SNP [dm6]	G	A	4.076e^-4	0.78	SYNONYMOUS_CODING nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22537542	3R_22537542_SNP [dm3] 3R_26711820_SNP [dm6]	G	C	4.091e^-4	0.78	INTRON amon
3L	7311411	3L_7311411_SNP [dm3] 3L_7318311_SNP [dm6]	C	T	4.097e^-4	0.78	INTERGENIC
3L	1386069	3L_1386069_SNP [dm3] 3L_1386069_SNP [dm6]	C	T	4.097e^-4	0.78	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14357962	3R_14357962_SNP [dm3] 3R_18532240_SNP [dm6]	A	G	4.101e^-4	0.78	INTRON fru
2L	6678305	2L_6678305_SNP [dm3] 2L_6678305_SNP [dm6]	G	A	4.106e^-4	0.78	UTR_3_PRIME Nhe3 UPSTREAM CG11329 INTRON Nhe3
3R	26335946	3R_26335946_DEL [dm3] 3R_30510224_DEL [dm6]	CCTTTAAGTC	C	4.108e^-4	0.78	UTR_3_PRIME PH4alphaNE2 DOWNSTREAM CG34041
3L	5251831	3L_5251831_SNP [dm3] 3L_5258731_SNP [dm6]	G	A	4.112e^-4	0.78	INTRON shep
2R	17836719	2R_17836719_SNP [dm3] 2R_21949214_SNP [dm6]	T	C	4.115e^-4	0.78	INTERGENIC
3L	14255728	3L_14255728_SNP [dm3] 3L_14262628_SNP [dm6]	A	T	4.116e^-4	0.78	INTERGENIC
2L	18113383	2L_18113383_SNP [dm3] 2L_18113383_SNP [dm6]	C	T	4.117e^-4	0.78	UPSTREAM CG44476 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14904839	2L_14904839_SNP [dm3] 2L_14904839_SNP [dm6]	A	C	4.121e^-4	0.78	INTERGENIC
2L	11702547	2L_11702547_SNP [dm3] 2L_11702547_SNP [dm6]	T	G	4.122e^-4	0.78	INTERGENIC
3L	10793936	3L_10793936_SNP [dm3] 3L_10800836_SNP [dm6]	A	G	4.122e^-4	0.78	UPSTREAM CG12523 INTERGENIC	TF binding site mE1_TFBS_cad
X	12260200	X_12260200_SNP [dm3] X_12366167_SNP [dm6]	T	C	4.124e^-4	0.78	INTERGENIC
2L	20114349	2L_20114349_SNP [dm3] 2L_20114349_SNP [dm6]	C	T	4.126e^-4	0.78	INTERGENIC
2R	14589903	2R_14589903_SNP [dm3] 2R_18702398_SNP [dm6]	A	T	4.130e^-4	0.78	DOWNSTREAM Sik3 INTRON Sik3
2R	12461954	2R_12461954_SNP [dm3] 2R_16574449_SNP [dm6]	C	T	4.141e^-4	0.78	DOWNSTREAM CG8317 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	20742486	X_20742486_SNP [dm3] X_20871459_SNP [dm6]	G	A	4.143e^-4	0.78	INTRON shakB
3R	6542668	3R_6542668_SNP [dm3] 3R_10716946_SNP [dm6]	T	C	4.147e^-4	0.78	INTERGENIC
2L	4660757	2L_4660757_SNP [dm3] 2L_4660757_SNP [dm6]	C	A	4.147e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2723340	2L_2723340_DEL [dm3] 2L_2723340_DEL [dm6]	AATAA	A	4.150e^-4	0.78	INTERGENIC
2L	5522539	2L_5522539_SNP [dm3] 2L_5522539_SNP [dm6]	G	A	4.158e^-4	0.78	SYNONYMOUS_CODING CG7371
2L	19966378	2L_19966378_SNP [dm3] 2L_19966378_SNP [dm6]	C	A	4.162e^-4	0.78	DOWNSTREAM CG10680 & 1 other INTRON OS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5107162	2L_5107162_SNP [dm3] 2L_5107162_SNP [dm6]	G	A	4.165e^-4	0.78	INTRON Msp300	TF binding site mE1_TFBS_Trl
2L	14323010	2L_14323010_SNP [dm3] 2L_14323010_SNP [dm6]	A	G	4.170e^-4	0.78	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3R	26922219	3R_26922219_SNP [dm3] 3R_31096497_SNP [dm6]	A	T	4.184e^-4	0.78	INTRON CG11317
3L	8384729	3L_8384729_SNP [dm3] 3L_8391629_SNP [dm6]	C	A	4.185e^-4	0.78	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10301720	3R_10301720_SNP [dm3] 3R_14475998_SNP [dm6]	G	A	4.186e^-4	0.78	INTRON cv-c
2L	18347569	2L_18347569_SNP [dm3] 2L_18347569_SNP [dm6]	T	A	4.191e^-4	0.78	INTRON Fas3
2L	973549	2L_973549_SNP [dm3] 2L_973549_SNP [dm6]	T	C	4.198e^-4	0.78	INTERGENIC
2R	20031638	2R_20031638_SNP [dm3] 2R_24144115_SNP [dm6]	G	A	4.198e^-4	0.78	INTRON Dat
2R	14563752	2R_14563752_INS [dm3] 2R_18676247_INS [dm6]	C	CTGCT	4.199e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13001449	2R_13001449_SNP [dm3] 2R_17113944_SNP [dm6]	G	A	4.202e^-4	0.78	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad
2L	7594713	2L_7594713_SNP [dm3] 2L_7594713_SNP [dm6]	G	A	4.208e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18979680	3R_18979680_SNP [dm3] 3R_23153958_SNP [dm6]	T	A	4.210e^-4	0.78	SYNONYMOUS_CODING unk
2R	9754184	2R_9754184_SNP [dm3] 2R_13866679_SNP [dm6]	G	A	4.214e^-4	0.78	INTRON shot
3L	11081969	3L_11081969_SNP [dm3] 3L_11088869_SNP [dm6]	G	C	4.214e^-4	0.78	INTRON JIL-1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.691e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.6441	0.0219

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1952 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15868484	2L_15868484_SNP [dm3] 2L_15868484_SNP [dm6]	C	T	8.963e^-7	0.567	INTERGENIC
2L	15868632	2L_15868632_SNP [dm3] 2L_15868632_SNP [dm6]	G	A	1.120e^-6	0.567	INTERGENIC
3L	12863199	3L_12863199_SNP [dm3] 3L_12870099_SNP [dm6]	A	G	1.173e^-6	0.567	INTERGENIC
2L	15868793	2L_15868793_SNP [dm3] 2L_15868793_SNP [dm6]	C	T	1.901e^-6	0.567	INTERGENIC
2R	17864358	2R_17864358_SNP [dm3] 2R_21976853_SNP [dm6]	T	C	1.911e^-6	0.567	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304	TF binding site mE1_TFBS_sens
3L	18678134	3L_18678134_SNP [dm3] 3L_18685034_SNP [dm6]	A	T	1.989e^-6	0.567	NON_SYNONYMOUS_CODING Cyp12c1 UPSTREAM Chmp1	TF binding site mE1_TFBS_sens
X	21280598	X_21280598_SNP [dm3] X_21409571_SNP [dm6]	A	G	2.117e^-6	0.567	EXON CR45003
3R	16539594	3R_16539594_SNP [dm3] 3R_20713872_SNP [dm6]	A	C	4.247e^-6	0.801	INTRON Oamb	TF binding site BDTNP1_TFBS_dl
2R	14825724	2R_14825724_SNP [dm3] 2R_18938219_SNP [dm6]	T	C	4.506e^-6	0.801	INTRON sano
2R	14826150	2R_14826150_SNP [dm3] 2R_18938645_SNP [dm6]	C	T	4.569e^-6	0.801	INTRON sano
3L	11170007	3L_11170007_DEL [dm3] 3L_11176907_DEL [dm6]	AA	A	4.696e^-6	0.801	DOWNSTREAM GlcAT-P & 1 other INTERGENIC
2L	15868585	2L_15868585_SNP [dm3] 2L_15868585_SNP [dm6]	G	A	5.601e^-6	0.801	INTERGENIC
2R	20521605	2R_20521605_SNP [dm3] 2R_24634082_SNP [dm6]	G	T	6.580e^-6	0.801	INTRON CG13594
3L	12856352	3L_12856352_SNP [dm3] 3L_12863252_SNP [dm6]	A	G	7.382e^-6	0.801	UPSTREAM CG10943 INTERGENIC
X	12293020	X_12293020_SNP [dm3] X_12398987_SNP [dm6]	A	T	7.603e^-6	0.801	INTERGENIC
2L	15868790	2L_15868790_SNP [dm3] 2L_15868790_SNP [dm6]	A	T	8.319e^-6	0.801	INTERGENIC
2L	15868540	2L_15868540_SNP [dm3] 2L_15868540_SNP [dm6]	A	T	9.321e^-6	0.801	INTERGENIC
3L	12597207	3L_12597207_SNP [dm3] 3L_12604107_SNP [dm6]	C	A	9.451e^-6	0.801	INTERGENIC
2L	15868699	2L_15868699_SNP [dm3] 2L_15868699_SNP [dm6]	C	T	1.012e^-5	0.801	INTERGENIC
3R	16578188	3R_16578188_SNP [dm3] 3R_20752466_SNP [dm6]	G	T	1.014e^-5	0.801	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
2L	15868762	2L_15868762_SNP [dm3] 2L_15868762_SNP [dm6]	A	T	1.051e^-5	0.801	INTERGENIC
2R	14825630	2R_14825630_SNP [dm3] 2R_18938125_SNP [dm6]	T	C	1.059e^-5	0.801	INTRON sano
2R	6463148	2R_6463148_SNP [dm3] 2R_10575643_SNP [dm6]	C	T	1.089e^-5	0.801	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13301368	2R_13301368_SNP [dm3] 2R_17413863_SNP [dm6]	T	C	1.098e^-5	0.801	DOWNSTREAM cnk & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15867689	2L_15867689_SNP [dm3] 2L_15867689_SNP [dm6]	T	C	1.213e^-5	0.801	INTERGENIC
2R	14825585	2R_14825585_SNP [dm3] 2R_18938080_SNP [dm6]	C	A	1.381e^-5	0.801	INTRON sano
3L	14248742	3L_14248742_SNP [dm3] 3L_14255642_SNP [dm6]	A	T	1.390e^-5	0.801	INTERGENIC
3L	13486721	3L_13486721_SNP [dm3] 3L_13493621_SNP [dm6]	C	G	1.411e^-5	0.801	INTRON Tgi
3L	3703184	3L_3703184_SNP [dm3] 3L_3703184_SNP [dm6]	G	T	1.417e^-5	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17987425	2R_17987425_DEL [dm3] 2R_22099920_DEL [dm6]	AA	A	1.420e^-5	0.801	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18732933	2R_18732933_SNP [dm3] 2R_22845410_SNP [dm6]	A	G	1.437e^-5	0.801	UPSTREAM CG3649 INTERGENIC
3L	13692739	3L_13692739_SNP [dm3] 3L_13699639_SNP [dm6]	T	G	1.442e^-5	0.801	INTRON bru-3
2L	15868532	2L_15868532_SNP [dm3] 2L_15868532_SNP [dm6]	A	T	1.514e^-5	0.801	INTERGENIC
3L	3702072	3L_3702072_INS [dm3] 3L_3702072_INS [dm6]	G	GG	1.524e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15868782	2L_15868782_SNP [dm3] 2L_15868782_SNP [dm6]	G	T	1.537e^-5	0.801	INTERGENIC
3L	13468478	3L_13468478_SNP [dm3] 3L_13475378_SNP [dm6]	T	A	1.633e^-5	0.801	UPSTREAM CG10089 INTERGENIC
2L	10327347	2L_10327347_SNP [dm3] 2L_10327347_SNP [dm6]	G	C	1.907e^-5	0.801	SYNONYMOUS_CODING RnrL DOWNSTREAM CG5375	TF binding site mE1_TFBS_sens
2L	15868984	2L_15868984_SNP [dm3] 2L_15868984_SNP [dm6]	C	T	1.930e^-5	0.801	INTERGENIC
2L	15868747	2L_15868747_SNP [dm3] 2L_15868747_SNP [dm6]	A	T	1.932e^-5	0.801	INTERGENIC
2L	15869702	2L_15869702_SNP [dm3] 2L_15869702_SNP [dm6]	A	G	1.962e^-5	0.801	INTERGENIC
2L	15867801	2L_15867801_SNP [dm3] 2L_15867801_SNP [dm6]	G	A	1.977e^-5	0.801	INTERGENIC
2R	12792795	2R_12792795_INS [dm3] 2R_16905290_INS [dm6]	A	AA	2.140e^-5	0.801	INTERGENIC
3L	5272797	3L_5272797_SNP [dm3] 3L_5279697_SNP [dm6]	T	C	2.155e^-5	0.801	INTERGENIC
2L	15868744	2L_15868744_SNP [dm3] 2L_15868744_SNP [dm6]	C	A	2.172e^-5	0.801	INTERGENIC
3L	12863189	3L_12863189_SNP [dm3] 3L_12870089_SNP [dm6]	T	A	2.189e^-5	0.801	INTERGENIC
2L	9964668	2L_9964668_SNP [dm3] 2L_9964668_SNP [dm6]	G	A	2.233e^-5	0.801	SYNONYMOUS_CODING Dref UPSTREAM CG5850	TF binding site mE1_TFBS_sens
X	10840825	X_10840825_SNP [dm3] X_10946792_SNP [dm6]	A	G	2.333e^-5	0.801	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	17762258	3L_17762258_SNP [dm3] 3L_17769158_SNP [dm6]	T	A	2.337e^-5	0.801	INTERGENIC
2L	9999781	2L_9999781_SNP [dm3] 2L_9999781_SNP [dm6]	G	T	2.349e^-5	0.801	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	14097058	3L_14097058_SNP [dm3] 3L_14103958_SNP [dm6]	C	T	2.425e^-5	0.801	UTR_3_PRIME Sox21a
3L	15059768	3L_15059768_SNP [dm3] 3L_15066668_SNP [dm6]	G	A	2.497e^-5	0.801	UTR_3_PRIME cp309	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13814716	2R_13814716_SNP [dm3] 2R_17927211_SNP [dm6]	T	C	2.520e^-5	0.801	DOWNSTREAM Elk INTERGENIC
2R	20581084	2R_20581084_SNP [dm3] 2R_24693561_SNP [dm6]	A	T	2.538e^-5	0.801	UTR_5_PRIME ST6Gal INTRON ST6Gal	TF binding site mE1_TFBS_cad
2L	9999789	2L_9999789_SNP [dm3] 2L_9999789_SNP [dm6]	G	A	2.541e^-5	0.801	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2R	16912505	2R_16912505_SNP [dm3] 2R_21025000_SNP [dm6]	T	A	2.613e^-5	0.801	UPSTREAM CG9350 DOWNSTREAM RIC-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	2.646e^-5	0.801	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19297636	3L_19297636_SNP [dm3] 3L_19304536_SNP [dm6]	C	T	2.742e^-5	0.801	SYNONYMOUS_CODING pip DOWNSTREAM pip INTRON pip	TF binding site mE1_TFBS_sens
3L	13486704	3L_13486704_SNP [dm3] 3L_13493604_SNP [dm6]	A	T	2.773e^-5	0.801	INTRON Tgi
3L	5824830	3L_5824830_DEL [dm3] 3L_5831730_DEL [dm6]	CACTTTCGGGCCAC...	C	2.901e^-5	0.801	INTRON vn
3R	18021584	3R_18021584_SNP [dm3] 3R_22195862_SNP [dm6]	T	A	2.967e^-5	0.801	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15868727	2L_15868727_SNP [dm3] 2L_15868727_SNP [dm6]	C	T	2.972e^-5	0.801	INTERGENIC
2R	17530985	2R_17530985_SNP [dm3] 2R_21643480_SNP [dm6]	A	C	2.995e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10003197	2L_10003197_SNP [dm3] 2L_10003197_SNP [dm6]	C	A	3.019e^-5	0.801	UPSTREAM SoYb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	12666719	3L_12666719_SNP [dm3] 3L_12673619_SNP [dm6]	C	T	3.070e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15013093	3R_15013093_SNP [dm3] 3R_19187371_SNP [dm6]	T	C	3.180e^-5	0.801	INTRON CG31475	TF binding site mE1_TFBS_inv
3R	15013089	3R_15013089_INS [dm3] 3R_19187367_INS [dm6]	T	TT	3.185e^-5	0.801	INTRON CG31475	TF binding site mE1_TFBS_inv
X	3047443	X_3047443_SNP [dm3] X_3153410_SNP [dm6]	C	T	3.228e^-5	0.801	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19909070	3R_19909070_SNP [dm3] 3R_24083348_SNP [dm6]	G	A	3.238e^-5	0.801	INTRON 4EHP
2L	9999758	2L_9999758_SNP [dm3] 2L_9999758_SNP [dm6]	A	C	3.239e^-5	0.801	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2L	10381226	2L_10381226_SNP [dm3] 2L_10381226_SNP [dm6]	G	C	3.246e^-5	0.801	NON_SYNONYMOUS_CODING gny
2L	15867656	2L_15867656_SNP [dm3] 2L_15867656_SNP [dm6]	C	T	3.249e^-5	0.801	INTERGENIC
2L	4654543	2L_4654543_SNP [dm3] 2L_4654543_SNP [dm6]	G	A	3.285e^-5	0.801	INTERGENIC
2R	14826753	2R_14826753_SNP [dm3] 2R_18939248_SNP [dm6]	C	A	3.333e^-5	0.801	INTRON sano
2R	14826754	2R_14826754_SNP [dm3] 2R_18939249_SNP [dm6]	T	C	3.333e^-5	0.801	INTRON sano
3R	18021570	3R_18021570_SNP [dm3] 3R_22195848_SNP [dm6]	G	A	3.371e^-5	0.801	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12276081	3R_12276081_SNP [dm3] 3R_16450359_SNP [dm6]	G	T	3.391e^-5	0.801	INTRON Pak3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15868832	2L_15868832_INS [dm3] 2L_15868832_INS [dm6]	A	AGCTTTCGAACAAAA...	3.458e^-5	0.801	INTERGENIC
X	10832847	X_10832847_SNP [dm3] X_10938814_SNP [dm6]	C	T	3.458e^-5	0.801	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5466544	3L_5466544_SNP [dm3] 3L_5473444_SNP [dm6]	A	T	3.484e^-5	0.801	INTERGENIC
2L	15868490	2L_15868490_SNP [dm3] 2L_15868490_SNP [dm6]	C	T	3.572e^-5	0.801	INTERGENIC
2L	14470624	2L_14470624_SNP [dm3] 2L_14470624_SNP [dm6]	G	C	3.579e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14470628	2L_14470628_SNP [dm3] 2L_14470628_SNP [dm6]	T	G	3.579e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10239989	3L_10239989_SNP [dm3] 3L_10246889_SNP [dm6]	T	C	3.619e^-5	0.801	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	16401587	X_16401587_SNP [dm3] X_16507554_SNP [dm6]	T	C	3.645e^-5	0.801	INTRON para
3L	16966858	3L_16966858_SNP [dm3] 3L_16973758_SNP [dm6]	T	G	3.686e^-5	0.801	INTRON Exn
2R	20520271	2R_20520271_SNP [dm3] 2R_24632748_SNP [dm6]	T	C	3.742e^-5	0.801	NON_SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787	TF binding site mE1_TFBS_cad
2R	13301361	2R_13301361_SNP [dm3] 2R_17413856_SNP [dm6]	G	A	3.791e^-5	0.801	DOWNSTREAM cnk & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15869629	2L_15869629_SNP [dm3] 2L_15869629_SNP [dm6]	G	A	3.804e^-5	0.801	INTERGENIC
3L	8910787	3L_8910787_SNP [dm3] 3L_8917687_SNP [dm6]	C	A	3.817e^-5	0.801	INTRON Tsp66E
2L	15865893	2L_15865893_SNP [dm3] 2L_15865893_SNP [dm6]	T	G	3.846e^-5	0.801	UPSTREAM CG42792 INTERGENIC
3L	15064572	3L_15064572_INS [dm3] 3L_15071472_INS [dm6]	T	TT	3.938e^-5	0.812	INTRON cp309
2L	7210058	2L_7210058_SNP [dm3] 2L_7210058_SNP [dm6]	C	A	4.040e^-5	0.823	INTRON CG13784
3R	13333079	3R_13333079_SNP [dm3] 3R_17507357_SNP [dm6]	C	T	4.176e^-5	0.823	INTERGENIC
2L	1595196	2L_1595196_SNP [dm3] 2L_1595196_SNP [dm6]	T	C	4.214e^-5	0.823	SYNONYMOUS_CODING CG31935 INTRON haf
2R	5075294	2R_5075294_SNP [dm3] 2R_9187789_SNP [dm6]	G	A	4.242e^-5	0.823	UTR_3_PRIME CG8026 & 1 other INTRON CG8026 & 1 other
3R	9038169	3R_9038169_SNP [dm3] 3R_13212447_SNP [dm6]	G	T	4.309e^-5	0.823	INTRON CG8483
X	3726887	X_3726887_SNP [dm3] X_3832854_SNP [dm6]	C	T	4.380e^-5	0.823	INTRON ec	TF binding site mE1_TFBS_chinmo
3R	17725847	3R_17725847_SNP [dm3] 3R_21900125_SNP [dm6]	C	T	4.447e^-5	0.823	INTRON CG6678
3L	14352648	3L_14352648_INS [dm3] 3L_14359548_INS [dm6]	A	AA	4.514e^-5	0.823	INTRON fz
3R	17001909	3R_17001909_SNP [dm3] 3R_21176187_SNP [dm6]	T	G	4.541e^-5	0.823	INTRON SNF4Agamma
2L	11940135	2L_11940135_SNP [dm3] 2L_11940135_SNP [dm6]	T	A	4.602e^-5	0.823	DOWNSTREAM Or33c INTERGENIC
2L	15868865	2L_15868865_INS [dm3] 2L_15868865_INS [dm6]	C	CTTGACCCTGGGTAAAAGTC...	4.636e^-5	0.823	INTERGENIC
3R	17771287	3R_17771287_SNP [dm3] 3R_21945565_SNP [dm6]	C	A	4.652e^-5	0.823	INTERGENIC
2R	17471335	2R_17471335_SNP [dm3] 2R_21583830_SNP [dm6]	G	A	4.715e^-5	0.823	NON_SYNONYMOUS_CODING CG30222
3R	10301123	3R_10301123_SNP [dm3] 3R_14475401_SNP [dm6]	A	T	4.740e^-5	0.823	INTRON cv-c
3L	10725362	3L_10725362_SNP [dm3] 3L_10732262_SNP [dm6]	C	T	4.836e^-5	0.823	INTERGENIC
3R	15013065	3R_15013065_SNP [dm3] 3R_19187343_SNP [dm6]	C	T	4.860e^-5	0.823	INTRON CG31475	TF binding site mE1_TFBS_inv
2L	15869060	2L_15869060_SNP [dm3] 2L_15869060_SNP [dm6]	C	T	4.884e^-5	0.823	INTERGENIC
3L	3795119	3L_3795119_SNP [dm3] 3L_3795119_SNP [dm6]	A	T	4.895e^-5	0.823	UPSTREAM CG32264 INTRON CG32264
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	4.979e^-5	0.823	DOWNSTREAM aPKC INTRON CG10257
3R	16538756	3R_16538756_SNP [dm3] 3R_20713034_SNP [dm6]	T	A	5.037e^-5	0.823	INTRON Oamb
X	12258899	X_12258899_SNP [dm3] X_12364866_SNP [dm6]	T	G	5.077e^-5	0.823	INTERGENIC
3L	14097891	3L_14097891_SNP [dm3] 3L_14104791_SNP [dm6]	G	A	5.149e^-5	0.823	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13691261	3L_13691261_SNP [dm3] 3L_13698161_SNP [dm6]	G	T	5.165e^-5	0.823	INTRON bru-3
2L	15868954	2L_15868954_INS [dm3] 2L_15868954_INS [dm6]	T	GTATC	5.210e^-5	0.823	INTERGENIC
2R	14829496	2R_14829496_SNP [dm3] 2R_18941991_SNP [dm6]	G	T	5.210e^-5	0.823	INTRON sano
2L	15868951	2L_15868951_SNP [dm3] 2L_15868951_SNP [dm6]	C	T	5.266e^-5	0.823	INTERGENIC
2R	18700824	2R_18700824_SNP [dm3] 2R_22813319_SNP [dm6]	C	T	5.293e^-5	0.823	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_cad
2L	15868973	2L_15868973_SNP [dm3] 2L_15868973_SNP [dm6]	G	A	5.294e^-5	0.823	INTERGENIC
X	10842920	X_10842920_SNP [dm3] X_10948887_SNP [dm6]	A	T	5.325e^-5	0.823	INTRON Myo10A
2R	9658123	2R_9658123_SNP [dm3] 2R_13770618_SNP [dm6]	T	C	5.337e^-5	0.823	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10301121	3R_10301121_SNP [dm3] 3R_14475399_SNP [dm6]	G	A	5.370e^-5	0.823	INTRON cv-c
3R	18758719	3R_18758719_SNP [dm3] 3R_22932997_SNP [dm6]	G	C	5.396e^-5	0.823	INTRON klg
2R	17023742	2R_17023742_SNP [dm3] 2R_21136237_SNP [dm6]	G	T	5.490e^-5	0.826	INTRON Magi	TF binding site mE1_TFBS_sens
3L	8910786	3L_8910786_SNP [dm3] 3L_8917686_SNP [dm6]	T	C	5.531e^-5	0.826	INTRON Tsp66E
2L	1724540	2L_1724540_SNP [dm3] 2L_1724540_SNP [dm6]	T	A	5.548e^-5	0.826	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15868743	2L_15868743_SNP [dm3] 2L_15868743_SNP [dm6]	A	G	5.594e^-5	0.826	INTERGENIC
3R	16577992	3R_16577992_SNP [dm3] 3R_20752270_SNP [dm6]	T	A	5.648e^-5	0.827	INTRON CG42322
2R	14518365	2R_14518365_SNP [dm3] 2R_18630860_SNP [dm6]	G	A	5.803e^-5	0.844	SYNONYMOUS_CODING CG5482
3R	16539661	3R_16539661_SNP [dm3] 3R_20713939_SNP [dm6]	A	T	5.865e^-5	0.844	INTRON Oamb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11169962	3L_11169962_SNP [dm3] 3L_11176862_SNP [dm6]	A	C	5.906e^-5	0.844	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
3R	25684349	3R_25684349_SNP [dm3] 3R_29858627_SNP [dm6]	T	A	5.961e^-5	0.844	SYNONYMOUS_CODING CG7824 DOWNSTREAM CR31032	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	13468330	3L_13468330_SNP [dm3] 3L_13475230_SNP [dm6]	T	C	5.982e^-5	0.844	UPSTREAM CG10089 INTERGENIC
2R	14516372	2R_14516372_SNP [dm3] 2R_18628867_SNP [dm6]	G	A	6.081e^-5	0.849	SYNONYMOUS_CODING Eip55E DOWNSTREAM CG5482	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4050074	3L_4050074_SNP [dm3] 3L_4050074_SNP [dm6]	T	C	6.113e^-5	0.849	INTRON CG1136	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16989429	3L_16989429_SNP [dm3] 3L_16996329_SNP [dm6]	C	A	6.157e^-5	0.849	NON_SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad
2R	17097733	2R_17097733_SNP [dm3] 2R_21210228_SNP [dm6]	G	A	6.262e^-5	0.851	NON_SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
X	16401601	X_16401601_INS [dm3] X_16507568_INS [dm6]	G	GA	6.280e^-5	0.851	INTRON para
3L	17779007	3L_17779007_SNP [dm3] 3L_17785907_SNP [dm6]	A	T	6.350e^-5	0.851	UPSTREAM CR44668 INTERGENIC
2L	15868466	2L_15868466_SNP [dm3] 2L_15868466_SNP [dm6]	T	C	6.366e^-5	0.851	INTERGENIC
3R	12800933	3R_12800933_SNP [dm3] 3R_16975211_SNP [dm6]	T	A	6.399e^-5	0.851	UTR_5_PRIME VhaM9.7-d DOWNSTREAM Actn3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17001441	3R_17001441_SNP [dm3] 3R_21175719_SNP [dm6]	A	C	6.564e^-5	0.866	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
2R	14828732	2R_14828732_SNP [dm3] 2R_18941227_SNP [dm6]	C	A	6.602e^-5	0.866	INTRON sano
2R	4103099	2R_4103099_SNP [dm3] 2R_8215594_SNP [dm6]	T	C	6.735e^-5	0.877	INTRON LRP1
3L	1069905	3L_1069905_SNP [dm3] 3L_1069905_SNP [dm6]	T	C	6.918e^-5	0.879	INTRON bab1
2L	14451454	2L_14451454_INS [dm3] 2L_14451454_INS [dm6]	T	TT	7.008e^-5	0.879	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	18021578	3R_18021578_SNP [dm3] 3R_22195856_SNP [dm6]	G	A	7.119e^-5	0.879	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12155443	2R_12155443_SNP [dm3] 2R_16267938_SNP [dm6]	C	A	7.216e^-5	0.879	SYNONYMOUS_CODING Khc DOWNSTREAM csul	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	11066128	2R_11066128_SNP [dm3] 2R_15178623_SNP [dm6]	G	C	7.223e^-5	0.879	INTRON igl
3L	3479834	3L_3479834_SNP [dm3] 3L_3479834_SNP [dm6]	T	C	7.263e^-5	0.879	INTRON CG42324
2L	6953727	2L_6953727_SNP [dm3] 2L_6953727_SNP [dm6]	A	G	7.299e^-5	0.879	SPLICE_SITE_REGION SA DOWNSTREAM CG13775 INTRON SA	TF binding site mE1_TFBS_sens
2R	20521568	2R_20521568_DEL [dm3] 2R_24634045_DEL [dm6]	AGATTCGTAAAACTTTCAAC...	A	7.310e^-5	0.879	INTRON CG13594
2R	1392336	2R_1392336_SNP [dm3] 2R_5504831_SNP [dm6]	G	A	7.328e^-5	0.879	INTRON CG30438 & 1 other
3L	7311521	3L_7311521_SNP [dm3] 3L_7318421_SNP [dm6]	T	G	7.342e^-5	0.879	INTERGENIC
2L	12371266	2L_12371266_SNP [dm3] 2L_12371266_SNP [dm6]	G	A	7.343e^-5	0.879	INTRON bru-2
3L	3790184	3L_3790184_SNP [dm3] 3L_3790184_SNP [dm6]	T	C	7.346e^-5	0.879	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	6768655	2L_6768655_SNP [dm3] 2L_6768655_SNP [dm6]	T	C	7.446e^-5	0.879	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2L	14451500	2L_14451500_SNP [dm3] 2L_14451500_SNP [dm6]	A	G	7.461e^-5	0.879	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	21340410	X_21340410_SNP [dm3] X_21469383_SNP [dm6]	G	A	7.465e^-5	0.879	UPSTREAM CR45508 INTERGENIC
3R	15013092	3R_15013092_SNP [dm3] 3R_19187370_SNP [dm6]	T	G	7.500e^-5	0.879	INTRON CG31475	TF binding site mE1_TFBS_inv
3L	4824720	3L_4824720_SNP [dm3] 3L_4824720_SNP [dm6]	G	A	7.805e^-5	0.909	INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18094226	2L_18094226_SNP [dm3] 2L_18094226_SNP [dm6]	C	T	7.936e^-5	0.919	INTERGENIC
2R	3733805	2R_3733805_INS [dm3] 2R_7846300_INS [dm6]	C	CGGC	7.986e^-5	0.919	INTRON Dgk
3R	22870789	3R_22870789_INS [dm3] 3R_27045067_INS [dm6]	A	AA	8.040e^-5	0.919	INTRON RYa-R
3L	13468443	3L_13468443_SNP [dm3] 3L_13475343_SNP [dm6]	T	A	8.084e^-5	0.919	UPSTREAM CG10089 INTERGENIC
X	10840807	X_10840807_SNP [dm3] X_10946774_SNP [dm6]	T	C	8.194e^-5	0.926	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	6460133	2R_6460133_SNP [dm3] 2R_10572628_SNP [dm6]	A	T	8.304e^-5	0.932	INTRON psq
3R	10543141	3R_10543141_SNP [dm3] 3R_14717419_SNP [dm6]	G	A	8.503e^-5	0.932	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	7342603	2R_7342603_SNP [dm3] 2R_11455098_SNP [dm6]	A	G	8.569e^-5	0.932	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19516005	X_19516005_SNP [dm3] X_19621972_SNP [dm6]	T	A	8.580e^-5	0.932	UTR_3_PRIME NAA20 UPSTREAM CG14221 INTRON NAA20
3L	708602	3L_708602_SNP [dm3] 3L_708602_SNP [dm6]	C	A	8.581e^-5	0.932	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	25684267	3R_25684267_SNP [dm3] 3R_29858545_SNP [dm6]	C	T	8.670e^-5	0.932	NON_SYNONYMOUS_CODING CG7824 DOWNSTREAM CR31032	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_ttk
X	3726670	X_3726670_SNP [dm3] X_3832637_SNP [dm6]	G	C	8.768e^-5	0.932	INTRON ec
3R	17771283	3R_17771283_DEL [dm3] 3R_21945561_DEL [dm6]	AA	A	8.804e^-5	0.932	INTERGENIC
2L	2008617	2L_2008617_SNP [dm3] 2L_2008617_SNP [dm6]	T	A	8.821e^-5	0.932	UPSTREAM tRNA:CR31943 & 1 other DOWNSTREAM CR45712 INTRON Nplp4	TF binding site mE1_TFBS_cad
3L	11507013	3L_11507013_SNP [dm3] 3L_11513913_SNP [dm6]	A	T	8.841e^-5	0.932	DOWNSTREAM Sgs3 INTRON CG7512
2L	14452604	2L_14452604_SNP [dm3] 2L_14452604_SNP [dm6]	T	A	8.886e^-5	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9812033	2L_9812033_SNP [dm3] 2L_9812033_SNP [dm6]	G	A	9.056e^-5	0.932	INTRON nAChRalpha6
X	10047278	X_10047278_SNP [dm3] X_10153245_SNP [dm6]	A	G	9.109e^-5	0.932	UPSTREAM CG12645 INTRON CR44894
2L	15868926	2L_15868926_SNP [dm3] 2L_15868926_SNP [dm6]	T	G	9.149e^-5	0.932	INTERGENIC
3R	14584366	3R_14584366_SNP [dm3] 3R_18758644_SNP [dm6]	C	T	9.236e^-5	0.932	NON_SYNONYMOUS_CODING CG14299 DOWNSTREAM CG7720	TF binding site mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_Ubx
2L	895896	2L_895896_SNP [dm3] 2L_895896_SNP [dm6]	C	G	9.288e^-5	0.932	INTERGENIC
X	16260799	X_16260799_SNP [dm3] X_16366766_SNP [dm6]	A	T	9.486e^-5	0.932	UTR_3_PRIME nonA INTRON nonA
X	10832837	X_10832837_SNP [dm3] X_10938804_SNP [dm6]	A	G	9.503e^-5	0.932	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10832842	X_10832842_SNP [dm3] X_10938809_SNP [dm6]	T	A	9.503e^-5	0.932	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13876191	2R_13876191_SNP [dm3] 2R_17988686_SNP [dm6]	C	A	9.540e^-5	0.932	INTRON dpr13
2R	18852798	2R_18852798_SNP [dm3] 2R_22965275_SNP [dm6]	C	A	9.644e^-5	0.932	INTERGENIC
2R	14295458	2R_14295458_SNP [dm3] 2R_18407953_SNP [dm6]	G	C	9.675e^-5	0.932	NON_SYNONYMOUS_CODING GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
3L	18672007	3L_18672007_SNP [dm3] 3L_18678907_SNP [dm6]	T	C	9.725e^-5	0.932	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18672008	3L_18672008_SNP [dm3] 3L_18678908_SNP [dm6]	G	A	9.725e^-5	0.932	INTERGENIC	TF binding site mE1_TFBS_sens
3L	2917758	3L_2917758_SNP [dm3] 3L_2917758_SNP [dm6]	T	G	9.744e^-5	0.932	INTRON Shab
3L	5023306	3L_5023306_DEL [dm3] 3L_5023306_DEL [dm6]	TTCAAA	T	9.831e^-5	0.932	INTRON Con
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	9.846e^-5	0.932	INTRON mspo
X	4619869	X_4619869_SNP [dm3] X_4725836_SNP [dm6]	T	C	9.920e^-5	0.932	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
3L	10733540	3L_10733540_SNP [dm3] 3L_10740440_SNP [dm6]	T	G	9.940e^-5	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6463247	2R_6463247_SNP [dm3] 2R_10575742_SNP [dm6]	T	C	1.003e^-4	0.932	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9804343	2L_9804343_SNP [dm3] 2L_9804343_SNP [dm6]	T	C	1.005e^-4	0.932	INTRON nAChRalpha6
2R	6157481	2R_6157481_SNP [dm3] 2R_10269976_SNP [dm6]	T	C	1.006e^-4	0.932	DOWNSTREAM CG12910 INTRON CAP
3L	7311495	3L_7311495_SNP [dm3] 3L_7318395_SNP [dm6]	C	A	1.015e^-4	0.932	INTERGENIC
2R	5050119	2R_5050119_SNP [dm3] 2R_9162614_SNP [dm6]	T	G	1.017e^-4	0.932	UTR_3_PRIME CG8046 DOWNSTREAM CR44283
2L	15848700	2L_15848700_DEL [dm3] 2L_15848700_DEL [dm6]	AC	T	1.017e^-4	0.932	INTERGENIC
X	7547131	X_7547131_SNP [dm3] X_7653098_SNP [dm6]	C	T	1.019e^-4	0.932	INTRON ct
2R	13814712	2R_13814712_SNP [dm3] 2R_17927207_SNP [dm6]	C	T	1.022e^-4	0.932	DOWNSTREAM Elk INTERGENIC
3R	13655284	3R_13655284_SNP [dm3] 3R_17829562_SNP [dm6]	A	G	1.023e^-4	0.932	INTRON tinc
X	13204570	X_13204570_SNP [dm3] X_13310537_SNP [dm6]	A	T	1.025e^-4	0.932	INTRON IP3K2
3L	21645724	3L_21645724_SNP [dm3] 3L_21652624_SNP [dm6]	G	A	1.031e^-4	0.932	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	3477139	3L_3477139_SNP [dm3] 3L_3477139_SNP [dm6]	A	G	1.034e^-4	0.932	INTRON CG42324
2R	15139746	2R_15139746_SNP [dm3] 2R_19252241_SNP [dm6]	T	A	1.038e^-4	0.932	UPSTREAM CG33454 DOWNSTREAM CG33453 INTERGENIC
2R	14423807	2R_14423807_SNP [dm3] 2R_18536302_SNP [dm6]	T	A	1.038e^-4	0.932	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18687849	3L_18687849_SNP [dm3] 3L_18694749_SNP [dm6]	T	A	1.043e^-4	0.932	UPSTREAM CR43987 INTRON CG6893
X	11192889	X_11192889_SNP [dm3] X_11298856_SNP [dm6]	A	T	1.058e^-4	0.939	INTRON CG44422
3R	13889851	3R_13889851_INS [dm3] 3R_18064129_INS [dm6]	G	GTTCTTGGG	1.064e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	6061032	2R_6061032_SNP [dm3] 2R_10173527_SNP [dm6]	T	C	1.067e^-4	0.939	INTRON KCNQ
2L	14451505	2L_14451505_SNP [dm3] 2L_14451505_SNP [dm6]	G	A	1.073e^-4	0.94	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	1695268	2R_1695268_SNP [dm3] 2R_5807763_SNP [dm6]	C	A	1.084e^-4	0.942	INTRON dpr12	TF binding site BDTNP1_TFBS_hb
2L	9999872	2L_9999872_SNP [dm3] 2L_9999872_SNP [dm6]	C	T	1.085e^-4	0.942	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	9641659	3L_9641659_SNP [dm3] 3L_9648559_SNP [dm6]	T	G	1.092e^-4	0.943	INTRON fry & 1 other
X	7308782	X_7308782_SNP [dm3] X_7414749_SNP [dm6]	T	C	1.096e^-4	0.943	DOWNSTREAM CG42705 INTERGENIC
3L	18683745	3L_18683745_SNP [dm3] 3L_18690645_SNP [dm6]	A	G	1.110e^-4	0.943	INTERGENIC
2L	15852844	2L_15852844_SNP [dm3] 2L_15852844_SNP [dm6]	C	T	1.111e^-4	0.943	SYNONYMOUS_CODING CG13243
3R	15328784	3R_15328784_SNP [dm3] 3R_19503062_SNP [dm6]	T	G	1.124e^-4	0.943	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
X	3658776	X_3658776_SNP [dm3] X_3764743_SNP [dm6]	G	T	1.131e^-4	0.943	INTRON tlk
2R	17864226	2R_17864226_SNP [dm3] 2R_21976721_SNP [dm6]	C	T	1.136e^-4	0.943	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
4	164606	4_164606_SNP [dm3] 4_143980_SNP [dm6]	C	A	1.142e^-4	0.943	DOWNSTREAM CG32000 INTERGENIC	transposable element FlyBase
3L	17762060	3L_17762060_DEL [dm3] 3L_17768960_DEL [dm6]	CC	C	1.143e^-4	0.943	INTERGENIC
2R	5075321	2R_5075321_SNP [dm3] 2R_9187816_SNP [dm6]	A	T	1.147e^-4	0.943	UTR_3_PRIME CG8026 & 1 other INTRON CG8026 & 1 other
3L	5273741	3L_5273741_SNP [dm3] 3L_5280641_SNP [dm6]	T	G	1.153e^-4	0.943	INTERGENIC
2R	5935651	2R_5935651_INS [dm3] 2R_10048146_INS [dm6]	A	AA	1.157e^-4	0.943	UPSTREAM CoVIIc INTRON oys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16715301	3L_16715301_SNP [dm3] 3L_16722201_SNP [dm6]	G	A	1.160e^-4	0.943	SPLICE_SITE_REGION Dab INTRON Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19175348	2L_19175348_SNP [dm3] 2L_19175348_SNP [dm6]	G	A	1.163e^-4	0.943	UTR_3_PRIME brat INTRON brat
2R	13343323	2R_13343323_SNP [dm3] 2R_17455818_SNP [dm6]	G	A	1.167e^-4	0.943	SYNONYMOUS_CODING robls54B UPSTREAM robl DOWNSTREAM CG10764	TF binding site BDTNP1_TFBS_dl
2L	9999674	2L_9999674_SNP [dm3] 2L_9999674_SNP [dm6]	A	G	1.167e^-4	0.943	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	8910839	3L_8910839_SNP [dm3] 3L_8917739_SNP [dm6]	A	G	1.171e^-4	0.943	INTRON Tsp66E
3L	5466530	3L_5466530_SNP [dm3] 3L_5473430_SNP [dm6]	G	A	1.178e^-4	0.944	INTERGENIC
2R	14825602	2R_14825602_SNP [dm3] 2R_18938097_SNP [dm6]	C	G	1.188e^-4	0.944	INTRON sano
2R	16753782	2R_16753782_SNP [dm3] 2R_20866277_SNP [dm6]	A	G	1.199e^-4	0.944	SYNONYMOUS_CODING CG15227	TF binding site mE1_TFBS_sens
3L	15157293	3L_15157293_SNP [dm3] 3L_15164193_SNP [dm6]	T	C	1.203e^-4	0.944	UPSTREAM CG7011 INTERGENIC
2L	11891442	2L_11891442_SNP [dm3] 2L_11891442_SNP [dm6]	C	T	1.208e^-4	0.944	INTRON Pde1c
3L	3790189	3L_3790189_SNP [dm3] 3L_3790189_SNP [dm6]	G	A	1.217e^-4	0.944	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	7974941	3L_7974941_SNP [dm3] 3L_7981841_SNP [dm6]	G	C	1.231e^-4	0.944	INTRON nmo	TF binding site mE1_TFBS_Kr
2R	10090609	2R_10090609_SNP [dm3] 2R_14203104_SNP [dm6]	T	C	1.251e^-4	0.944	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15868974	2L_15868974_SNP [dm3] 2L_15868974_SNP [dm6]	G	C	1.269e^-4	0.944	INTERGENIC
2R	16753692	2R_16753692_SNP [dm3] 2R_20866187_SNP [dm6]	A	T	1.288e^-4	0.944	SYNONYMOUS_CODING CG15227
X	3870987	X_3870987_SNP [dm3] X_3976954_SNP [dm6]	C	A	1.291e^-4	0.944	INTERGENIC
2R	9440435	2R_9440435_SNP [dm3] 2R_13552930_SNP [dm6]	C	G	1.303e^-4	0.944	UPSTREAM CG33156 INTRON CG33156
2L	15868812	2L_15868812_SNP [dm3] 2L_15868812_SNP [dm6]	A	C	1.312e^-4	0.944	INTERGENIC
3R	17771255	3R_17771255_SNP [dm3] 3R_21945533_SNP [dm6]	G	C	1.324e^-4	0.944	INTERGENIC
3R	19564688	3R_19564688_SNP [dm3] 3R_23738966_SNP [dm6]	T	C	1.326e^-4	0.944	INTRON Hmgcr
3R	19729608	3R_19729608_SNP [dm3] 3R_23903886_SNP [dm6]	T	C	1.338e^-4	0.944	INTRON sba
3L	11575814	3L_11575814_SNP [dm3] 3L_11582714_SNP [dm6]	C	T	1.338e^-4	0.944	NON_SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
2R	17471853	2R_17471853_DEL [dm3] 2R_21584348_DEL [dm6]	AACA	A	1.339e^-4	0.944	UTR_3_PRIME CG30222 INTRON CG30222
3L	2849846	3L_2849846_SNP [dm3] 3L_2849846_SNP [dm6]	A	G	1.348e^-4	0.944	INTRON CG43444	TF binding site mE1_TFBS_cad
2L	14452574	2L_14452574_SNP [dm3] 2L_14452574_SNP [dm6]	T	G	1.350e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15853320	3R_15853320_SNP [dm3] 3R_20027598_SNP [dm6]	C	A	1.355e^-4	0.944	NON_SYNONYMOUS_CODING CG4424 UPSTREAM CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18680360	3L_18680360_DEL [dm3] 3L_18687260_DEL [dm6]	TTTTCTTACCGCT...	T	1.356e^-4	0.944	UPSTREAM Cyp12c1 INTERGENIC
2L	10271888	2L_10271888_SNP [dm3] 2L_10271888_SNP [dm6]	T	C	1.358e^-4	0.944	NON_SYNONYMOUS_CODING trk DOWNSTREAM Utx & 1 other	TF binding site mE1_TFBS_sens
X	10832823	X_10832823_SNP [dm3] X_10938790_SNP [dm6]	G	A	1.360e^-4	0.944	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4776832	3L_4776832_SNP [dm3] 3L_4776832_SNP [dm6]	A	T	1.362e^-4	0.944	INTRON RhoGEF64C
2R	16531559	2R_16531559_SNP [dm3] 2R_20644054_SNP [dm6]	T	A	1.366e^-4	0.944	UTR_5_PRIME DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	17725643	3R_17725643_SNP [dm3] 3R_21899921_SNP [dm6]	A	G	1.367e^-4	0.944	INTRON CG6678
2L	4115935	2L_4115935_SNP [dm3] 2L_4115935_SNP [dm6]	G	T	1.375e^-4	0.944	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	7059580	2R_7059580_SNP [dm3] 2R_11172075_SNP [dm6]	C	T	1.376e^-4	0.944	UTR_5_PRIME CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
3R	10301140	3R_10301140_SNP [dm3] 3R_14475418_SNP [dm6]	G	T	1.381e^-4	0.944	INTRON cv-c
3L	11543861	3L_11543861_SNP [dm3] 3L_11550761_SNP [dm6]	T	C	1.383e^-4	0.944	INTRON Mob2	TF binding site mE1_TFBS_Trl
3R	9038179	3R_9038179_SNP [dm3] 3R_13212457_SNP [dm6]	T	C	1.392e^-4	0.944	INTRON CG8483
3R	15332575	3R_15332575_SNP [dm3] 3R_19506853_SNP [dm6]	A	T	1.406e^-4	0.944	SYNONYMOUS_CODING Dys
X	10448763	X_10448763_SNP [dm3] X_10554730_SNP [dm6]	A	T	1.423e^-4	0.944	INTRON spri
X	3725240	X_3725240_SNP [dm3] X_3831207_SNP [dm6]	C	T	1.424e^-4	0.944	UTR_3_PRIME CG2901 INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17762101	3L_17762101_DEL [dm3] 3L_17769001_DEL [dm6]	TTTA	T	1.426e^-4	0.944	INTERGENIC
3R	15332496	3R_15332496_SNP [dm3] 3R_19506774_SNP [dm6]	G	T	1.426e^-4	0.944	INTRON Dys
X	10448749	X_10448749_SNP [dm3] X_10554716_SNP [dm6]	A	G	1.430e^-4	0.944	INTRON spri
3R	17725765	3R_17725765_SNP [dm3] 3R_21900043_SNP [dm6]	T	A	1.430e^-4	0.944	INTRON CG6678
3L	16230069	3L_16230069_SNP [dm3] 3L_16236969_SNP [dm6]	A	T	1.433e^-4	0.944	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
X	3726604	X_3726604_SNP [dm3] X_3832571_SNP [dm6]	T	C	1.433e^-4	0.944	INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	5103603	2L_5103603_INS [dm3] 2L_5103603_INS [dm6]	T	TT	1.440e^-4	0.944	SPLICE_SITE_REGION Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	1.441e^-4	0.944	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18679656	3L_18679656_SNP [dm3] 3L_18686556_SNP [dm6]	G	T	1.447e^-4	0.944	UPSTREAM Cyp12c1 INTERGENIC
3R	17771064	3R_17771064_SNP [dm3] 3R_21945342_SNP [dm6]	A	G	1.448e^-4	0.944	INTERGENIC
3R	23663322	3R_23663322_SNP [dm3] 3R_27837600_SNP [dm6]	T	C	1.473e^-4	0.944	INTRON CG34353
3L	3634034	3L_3634034_SNP [dm3] 3L_3634034_SNP [dm6]	A	C	1.474e^-4	0.944	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12472690	2L_12472690_SNP [dm3] 2L_12472690_SNP [dm6]	C	T	1.475e^-4	0.944	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15545946	3R_15545946_SNP [dm3] 3R_19720224_SNP [dm6]	A	T	1.477e^-4	0.944	INTERGENIC
2R	8488075	2R_8488075_SNP [dm3] 2R_12600570_SNP [dm6]	A	T	1.479e^-4	0.944	INTRON Amph
3R	17931593	3R_17931593_SNP [dm3] 3R_22105871_SNP [dm6]	C	T	1.504e^-4	0.944	DOWNSTREAM CG13407 INTRON CG5778
X	7309193	X_7309193_SNP [dm3] X_7415160_SNP [dm6]	C	T	1.531e^-4	0.944	DOWNSTREAM CG42705 INTERGENIC
X	7309228	X_7309228_SNP [dm3] X_7415195_SNP [dm6]	G	A	1.531e^-4	0.944	DOWNSTREAM CG42705 INTERGENIC
X	7309296	X_7309296_SNP [dm3] X_7415263_SNP [dm6]	T	C	1.531e^-4	0.944	DOWNSTREAM CG42705 INTERGENIC
3L	8213694	3L_8213694_SNP [dm3] 3L_8220594_SNP [dm6]	C	T	1.540e^-4	0.944	INTERGENIC
X	11168951	X_11168951_SNP [dm3] X_11274918_SNP [dm6]	A	T	1.542e^-4	0.944	INTRON CG44422
2R	19874850	2R_19874850_DEL [dm3] 2R_23987327_DEL [dm6]	CTTTTA	C	1.542e^-4	0.944	SPLICE_SITE_REGION Phm DOWNSTREAM CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15861706	2L_15861706_SNP [dm3] 2L_15861706_SNP [dm6]	G	T	1.548e^-4	0.944	INTERGENIC
2R	3733905	2R_3733905_SNP [dm3] 2R_7846400_SNP [dm6]	T	C	1.549e^-4	0.944	INTRON Dgk
X	19001039	X_19001039_SNP [dm3] X_19107006_SNP [dm6]	C	G	1.551e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14096893	3L_14096893_INS [dm3] 3L_14103793_INS [dm6]	T	TAATA	1.555e^-4	0.944	UTR_3_PRIME Sox21a
2R	20586148	2R_20586148_SNP [dm3] 2R_24698625_SNP [dm6]	T	C	1.558e^-4	0.944	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2R	5937252	2R_5937252_SNP [dm3] 2R_10049747_SNP [dm6]	A	C	1.576e^-4	0.944	SPLICE_SITE_REGION CoVIIc UPSTREAM CG44296 INTRON CoVIIc	TF binding site BDTNP1_TFBS_dl
2L	15868729	2L_15868729_SNP [dm3] 2L_15868729_SNP [dm6]	A	G	1.578e^-4	0.944	INTERGENIC
2R	16912468	2R_16912468_SNP [dm3] 2R_21024963_SNP [dm6]	A	C	1.581e^-4	0.944	UPSTREAM CG9350 DOWNSTREAM RIC-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7977005	X_7977005_SNP [dm3] X_8082972_SNP [dm6]	A	C	1.583e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16963918	2L_16963918_SNP [dm3] 2L_16963918_SNP [dm6]	C	T	1.587e^-4	0.944	INTERGENIC
3L	11169031	3L_11169031_SNP [dm3] 3L_11175931_SNP [dm6]	A	G	1.607e^-4	0.944	UTR_3_PRIME CG14142	TF binding site mE1_TFBS_cad
2L	925776	2L_925776_SNP [dm3] 2L_925776_SNP [dm6]	C	T	1.612e^-4	0.944	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10832848	X_10832848_SNP [dm3] X_10938815_SNP [dm6]	C	T	1.618e^-4	0.944	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13814727	2R_13814727_SNP [dm3] 2R_17927222_SNP [dm6]	A	G	1.623e^-4	0.944	DOWNSTREAM Elk INTERGENIC
2L	5025186	2L_5025186_DEL [dm3] 2L_5025186_DEL [dm6]	AGCGAAAAATGTGAATCCCC...	A	1.623e^-4	0.944	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	16822057	3L_16822057_SNP [dm3] 3L_16828957_SNP [dm6]	G	A	1.625e^-4	0.944	UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3795140	3L_3795140_SNP [dm3] 3L_3795140_SNP [dm6]	C	A	1.630e^-4	0.944	UPSTREAM CG32264 INTRON CG32264
2L	9999656	2L_9999656_SNP [dm3] 2L_9999656_SNP [dm6]	C	A	1.636e^-4	0.944	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2R	15565382	2R_15565382_SNP [dm3] 2R_19677877_SNP [dm6]	G	A	1.649e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3862382	2L_3862382_SNP [dm3] 2L_3862382_SNP [dm6]	G	T	1.650e^-4	0.944	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	25684331	3R_25684331_SNP [dm3] 3R_29858609_SNP [dm6]	C	G	1.660e^-4	0.944	NON_SYNONYMOUS_CODING CG7824 DOWNSTREAM CR31032	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	27783604	3R_27783604_SNP [dm3] 3R_31957882_SNP [dm6]	G	T	1.663e^-4	0.944	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1366515	2L_1366515_SNP [dm3] 2L_1366515_SNP [dm6]	T	A	1.672e^-4	0.944	INTERGENIC
3L	4827780	3L_4827780_SNP [dm3] 3L_4827780_SNP [dm6]	T	C	1.677e^-4	0.944	SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo
2R	10727583	2R_10727583_SNP [dm3] 2R_14840078_SNP [dm6]	A	C	1.691e^-4	0.944	INTERGENIC
2R	13799295	2R_13799295_INS [dm3] 2R_17911790_INS [dm6]	A	AGGGA	1.693e^-4	0.944	INTRON Elk
X	8223238	X_8223238_SNP [dm3] X_8329205_SNP [dm6]	G	C	1.703e^-4	0.944	INTRON nAChRalpha3
3R	20167709	3R_20167709_SNP [dm3] 3R_24341987_SNP [dm6]	C	G	1.711e^-4	0.944	UPSTREAM Ms INTRON Ms
3R	16042677	3R_16042677_SNP [dm3] 3R_20216955_SNP [dm6]	G	C	1.715e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4138799	2R_4138799_SNP [dm3] 2R_8251294_SNP [dm6]	C	T	1.715e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7492065	2R_7492065_SNP [dm3] 2R_11604560_SNP [dm6]	C	T	1.722e^-4	0.944	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	10381181	2L_10381181_SNP [dm3] 2L_10381181_SNP [dm6]	C	T	1.725e^-4	0.944	SYNONYMOUS_CODING gny
3L	9489494	3L_9489494_SNP [dm3] 3L_9496394_SNP [dm6]	C	T	1.727e^-4	0.944	SYNONYMOUS_CODING path	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12958458	2L_12958458_SNP [dm3] 2L_12958458_SNP [dm6]	C	G	1.738e^-4	0.944	INTERGENIC
3L	3790192	3L_3790192_SNP [dm3] 3L_3790192_SNP [dm6]	A	T	1.745e^-4	0.944	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
3R	15326379	3R_15326379_DEL [dm3] 3R_19500657_DEL [dm6]	TT	T	1.750e^-4	0.944	INTRON Dys
2R	10632632	2R_10632632_SNP [dm3] 2R_14745127_SNP [dm6]	T	C	1.751e^-4	0.944	UPSTREAM Dro INTRON CG12858
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	1.754e^-4	0.944	INTRON Tgi
2R	16452739	2R_16452739_DEL [dm3] 2R_20565234_DEL [dm6]	AA	A	1.757e^-4	0.944	INTRON qsm
2L	2007687	2L_2007687_SNP [dm3] 2L_2007687_SNP [dm6]	T	A	1.766e^-4	0.944	UPSTREAM CG15353 & 1 other EXON CR45712
2L	7556340	2L_7556340_INS [dm3] 2L_7556340_INS [dm6]	T	TT	1.771e^-4	0.944	INTRON RapGAP1
3R	17688144	3R_17688144_SNP [dm3] 3R_21862422_SNP [dm6]	C	T	1.774e^-4	0.944	UPSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10535421	2L_10535421_SNP [dm3] 2L_10535421_SNP [dm6]	T	C	1.790e^-4	0.944	SYNONYMOUS_CODING CG18302
2L	3762537	2L_3762537_SNP [dm3] 2L_3762537_SNP [dm6]	C	T	1.797e^-4	0.944	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5244876	3L_5244876_SNP [dm3] 3L_5251776_SNP [dm6]	T	A	1.801e^-4	0.944	INTRON shep	TF binding site mE1_TFBS_inv
2L	3765835	2L_3765835_SNP [dm3] 2L_3765835_SNP [dm6]	G	T	1.803e^-4	0.944	UTR_3_PRIME CG43703 UPSTREAM CG43707 INTRON CG43707	TF binding site mE1_TFBS_Trl
2L	11934865	2L_11934865_SNP [dm3] 2L_11934865_SNP [dm6]	G	A	1.806e^-4	0.944	NON_SYNONYMOUS_CODING Or33a
2R	9658158	2R_9658158_SNP [dm3] 2R_13770653_SNP [dm6]	G	A	1.808e^-4	0.944	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12174698	3R_12174698_SNP [dm3] 3R_16348976_SNP [dm6]	C	A	1.809e^-4	0.944	UTR_5_PRIME CG14879 UPSTREAM Manf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19958728	3L_19958728_SNP [dm3] 3L_19965628_SNP [dm6]	A	T	1.814e^-4	0.944	INTRON Ac76E
3L	2982749	3L_2982749_SNP [dm3] 3L_2982749_SNP [dm6]	C	T	1.818e^-4	0.944	SYNONYMOUS_CODING CG2107
X	16156923	X_16156923_SNP [dm3] X_16262890_SNP [dm6]	T	C	1.820e^-4	0.944	INTERGENIC
3R	7220062	3R_7220062_SNP [dm3] 3R_11394340_SNP [dm6]	T	C	1.828e^-4	0.944	UTR_3_PRIME pros
2L	11890382	2L_11890382_SNP [dm3] 2L_11890382_SNP [dm6]	C	A	1.829e^-4	0.944	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5474010	3L_5474010_SNP [dm3] 3L_5480910_SNP [dm6]	C	T	1.830e^-4	0.944	NON_SYNONYMOUS_CODING CG4835
3R	15013076	3R_15013076_SNP [dm3] 3R_19187354_SNP [dm6]	C	T	1.834e^-4	0.944	INTRON CG31475	TF binding site mE1_TFBS_inv
2R	13814731	2R_13814731_SNP [dm3] 2R_17927226_SNP [dm6]	C	T	1.848e^-4	0.944	DOWNSTREAM Elk INTERGENIC
3R	20587826	3R_20587826_INS [dm3] 3R_24762104_INS [dm6]	A	ACTCAAAA	1.864e^-4	0.944	INTRON AstA
2R	7121759	2R_7121759_SNP [dm3] 2R_11234254_SNP [dm6]	T	A	1.869e^-4	0.944	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218 & 1 other
2L	11932610	2L_11932610_SNP [dm3] 2L_11932610_SNP [dm6]	C	T	1.872e^-4	0.944	INTERGENIC
2R	18296222	2R_18296222_DEL [dm3] 2R_22408717_DEL [dm6]	AG	A	1.876e^-4	0.944	UTR_5_PRIME ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10047262	X_10047262_SNP [dm3] X_10153229_SNP [dm6]	A	G	1.881e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
3R	6724640	3R_6724640_SNP [dm3] 3R_10898918_SNP [dm6]	G	C	1.886e^-4	0.944	UPSTREAM CR45578 INTERGENIC
X	16156921	X_16156921_SNP [dm3] X_16262888_SNP [dm6]	G	A	1.892e^-4	0.944	INTERGENIC
3R	18572360	3R_18572360_SNP [dm3] 3R_22746638_SNP [dm6]	T	C	1.893e^-4	0.944	SYNONYMOUS_CODING CG17141 DOWNSTREAM HP1c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15328901	3R_15328901_SNP [dm3] 3R_19503179_SNP [dm6]	G	C	1.899e^-4	0.944	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2L	15862647	2L_15862647_SNP [dm3] 2L_15862647_SNP [dm6]	T	G	1.911e^-4	0.944	UPSTREAM CR42791 INTERGENIC
3L	5133599	3L_5133599_SNP [dm3] 3L_5140499_SNP [dm6]	A	C	1.914e^-4	0.944	SYNONYMOUS_CODING CG10672 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9497112	X_9497112_SNP [dm3] X_9603079_SNP [dm6]	G	A	1.914e^-4	0.944	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17510699	2R_17510699_SNP [dm3] 2R_21623194_SNP [dm6]	T	C	1.931e^-4	0.944	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12173890	2R_12173890_SNP [dm3] 2R_16286385_SNP [dm6]	A	G	1.931e^-4	0.944	SYNONYMOUS_CODING CG9068 UPSTREAM CR43728
2R	12086916	2R_12086916_SNP [dm3] 2R_16199411_SNP [dm6]	C	T	1.932e^-4	0.944	UTR_3_PRIME CG44243 DOWNSTREAM shark & 2 others
2L	3810758	2L_3810758_SNP [dm3] 2L_3810758_SNP [dm6]	T	G	1.935e^-4	0.944	DOWNSTREAM CG3407 & 1 other INTERGENIC
2R	13742528	2R_13742528_INS [dm3] 2R_17855023_INS [dm6]	T	TTA	1.943e^-4	0.944	UPSTREAM olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10683340	2R_10683340_SNP [dm3] 2R_14795835_SNP [dm6]	C	G	1.964e^-4	0.944	INTRON kn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	17154281	3R_17154281_SNP [dm3] 3R_21328559_SNP [dm6]	G	A	1.965e^-4	0.944	INTRON CG16791
3R	22813772	3R_22813772_SNP [dm3] 3R_26988050_SNP [dm6]	A	T	1.965e^-4	0.944	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
2L	14452578	2L_14452578_SNP [dm3] 2L_14452578_SNP [dm6]	G	A	1.977e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16049401	2L_16049401_SNP [dm3] 2L_16049401_SNP [dm6]	C	A	1.978e^-4	0.944	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20153044	X_20153044_SNP [dm3] X_20282017_SNP [dm6]	C	T	1.984e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17931604	3R_17931604_SNP [dm3] 3R_22105882_SNP [dm6]	G	T	1.989e^-4	0.944	DOWNSTREAM CG13407 INTRON CG5778
3L	1592790	3L_1592790_SNP [dm3] 3L_1592790_SNP [dm6]	C	T	1.991e^-4	0.944	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	14119438	3L_14119438_SNP [dm3] 3L_14126338_SNP [dm6]	G	A	2.008e^-4	0.944	INTRON Sox21b
3R	9367891	3R_9367891_SNP [dm3] 3R_13542169_SNP [dm6]	T	C	2.014e^-4	0.944	INTERGENIC
3L	10710623	3L_10710623_SNP [dm3] 3L_10717523_SNP [dm6]	A	C	2.019e^-4	0.944	INTERGENIC
3L	3810047	3L_3810047_SNP [dm3] 3L_3810047_SNP [dm6]	G	T	2.028e^-4	0.944	SYNONYMOUS_CODING CG32262 DOWNSTREAM IntS10 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6016596	3L_6016596_SNP [dm3] 3L_6023496_SNP [dm6]	C	T	2.040e^-4	0.944	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl
2R	15136437	2R_15136437_SNP [dm3] 2R_19248932_SNP [dm6]	C	T	2.043e^-4	0.944	UPSTREAM wbl INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_inv
3L	13470164	3L_13470164_SNP [dm3] 3L_13477064_SNP [dm6]	T	A	2.048e^-4	0.944	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16922903	2R_16922903_SNP [dm3] 2R_21035398_SNP [dm6]	C	T	2.054e^-4	0.944	INTERGENIC
X	20929376	X_20929376_SNP [dm3] X_21058349_SNP [dm6]	T	A	2.059e^-4	0.944	INTRON bves
2L	19205118	2L_19205118_SNP [dm3] 2L_19205118_SNP [dm6]	G	A	2.068e^-4	0.944	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	18409010	X_18409010_SNP [dm3] X_18514977_SNP [dm6]	A	C	2.073e^-4	0.944	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	10047292	X_10047292_SNP [dm3] X_10153259_SNP [dm6]	A	T	2.081e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
2L	925759	2L_925759_SNP [dm3] 2L_925759_SNP [dm6]	C	T	2.083e^-4	0.944	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	133884	4_133884_SNP [dm3] 4_113258_SNP [dm6]	T	G	2.092e^-4	0.944	UTR_3_PRIME pan
2L	14470650	2L_14470650_SNP [dm3] 2L_14470650_SNP [dm6]	G	C	2.098e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11252588	3R_11252588_SNP [dm3] 3R_15426866_SNP [dm6]	C	T	2.113e^-4	0.944	UTR_5_PRIME CG6118 INTRON CG6118
2L	15869306	2L_15869306_SNP [dm3] 2L_15869306_SNP [dm6]	T	G	2.129e^-4	0.944	INTERGENIC
X	10448492	X_10448492_SNP [dm3] X_10554459_SNP [dm6]	T	C	2.133e^-4	0.944	INTRON spri
3R	19729625	3R_19729625_SNP [dm3] 3R_23903903_SNP [dm6]	T	G	2.136e^-4	0.944	INTRON sba
2R	14295475	2R_14295475_SNP [dm3] 2R_18407970_SNP [dm6]	G	A	2.138e^-4	0.944	SYNONYMOUS_CODING GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
X	14234067	X_14234067_SNP [dm3] X_14340034_SNP [dm6]	T	A	2.139e^-4	0.944	INTRON dpr8
2L	14451447	2L_14451447_SNP [dm3] 2L_14451447_SNP [dm6]	T	C	2.144e^-4	0.944	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	18298413	2R_18298413_SNP [dm3] 2R_22410908_SNP [dm6]	G	A	2.147e^-4	0.944	SYNONYMOUS_CODING qkr58E-3 UPSTREAM Mes4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7595239	2L_7595239_SNP [dm3] 2L_7595239_SNP [dm6]	T	C	2.150e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9900354	3L_9900354_SNP [dm3] 3L_9907254_SNP [dm6]	A	T	2.185e^-4	0.944	UPSTREAM CG34356 INTERGENIC
X	21916339	X_21916339_SNP [dm3] X_22514503_SNP [dm6]	A	C	2.187e^-4	0.944	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
2R	4499600	2R_4499600_SNP [dm3] 2R_8612095_SNP [dm6]	T	A	2.187e^-4	0.944	UTR_3_PRIME rgr DOWNSTREAM rgr INTRON CG8642
2R	16330030	2R_16330030_SNP [dm3] 2R_20442525_SNP [dm6]	A	C	2.188e^-4	0.944	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	15868834	2L_15868834_SNP [dm3] 2L_15868834_SNP [dm6]	T	A	2.191e^-4	0.944	INTERGENIC
2L	2896213	2L_2896213_SNP [dm3] 2L_2896213_SNP [dm6]	T	C	2.192e^-4	0.944	INTRON lilli	TF binding site BDTNP1_TFBS_dl
X	19501635	X_19501635_SNP [dm3] X_19607602_SNP [dm6]	C	T	2.209e^-4	0.944	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	19359921	3L_19359921_SNP [dm3] 3L_19366821_SNP [dm6]	T	A	2.218e^-4	0.944	INTRON CG32206
2R	11989334	2R_11989334_SNP [dm3] 2R_16101829_SNP [dm6]	C	G	2.227e^-4	0.944	SPLICE_SITE_REGION CG8414 UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl
2R	18733143	2R_18733143_SNP [dm3] 2R_22845620_SNP [dm6]	G	A	2.230e^-4	0.944	UPSTREAM CG3649 INTERGENIC
2R	18498535	2R_18498535_SNP [dm3] 2R_22611030_SNP [dm6]	G	T	2.238e^-4	0.944	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7308919	X_7308919_SNP [dm3] X_7414886_SNP [dm6]	T	C	2.240e^-4	0.944	DOWNSTREAM CG42705 INTERGENIC
2L	12959604	2L_12959604_SNP [dm3] 2L_12959604_SNP [dm6]	C	T	2.242e^-4	0.944	INTERGENIC
3L	5281401	3L_5281401_SNP [dm3] 3L_5288301_SNP [dm6]	A	G	2.248e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18397470	3L_18397470_SNP [dm3] 3L_18404370_SNP [dm6]	C	G	2.258e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs
X	20929367	X_20929367_INS [dm3] X_21058340_INS [dm6]	T	TCGT	2.260e^-4	0.944	INTRON bves
3L	683565	3L_683565_SNP [dm3] 3L_683565_SNP [dm6]	G	A	2.269e^-4	0.944	NON_SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	16963878	2L_16963878_SNP [dm3] 2L_16963878_SNP [dm6]	A	T	2.274e^-4	0.944	INTERGENIC
3L	12084728	3L_12084728_SNP [dm3] 3L_12091628_SNP [dm6]	C	A	2.281e^-4	0.944	INTERGENIC
2R	18852793	2R_18852793_SNP [dm3] 2R_22965270_SNP [dm6]	G	A	2.288e^-4	0.944	INTERGENIC
3R	12150906	3R_12150906_SNP [dm3] 3R_16325184_SNP [dm6]	A	T	2.292e^-4	0.944	UPSTREAM CG17929 DOWNSTREAM CG6901 INTRON Sulf1
2R	12155734	2R_12155734_SNP [dm3] 2R_16268229_SNP [dm6]	C	T	2.302e^-4	0.944	SYNONYMOUS_CODING Khc	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20695394	2L_20695394_SNP [dm3] 2L_20695394_SNP [dm6]	T	G	2.303e^-4	0.944	INTRON Hr38	TF binding site mE1_TFBS_sens
3R	11307523	3R_11307523_SNP [dm3] 3R_15481801_SNP [dm6]	T	A	2.311e^-4	0.944	UPSTREAM CG14870 INTERGENIC
2R	10727585	2R_10727585_SNP [dm3] 2R_14840080_SNP [dm6]	A	G	2.316e^-4	0.944	INTERGENIC
X	21340952	X_21340952_SNP [dm3] X_21469925_SNP [dm6]	G	T	2.320e^-4	0.944	INTERGENIC
2L	14452593	2L_14452593_SNP [dm3] 2L_14452593_SNP [dm6]	A	T	2.325e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20518412	2R_20518412_SNP [dm3] 2R_24630889_SNP [dm6]	A	G	2.328e^-4	0.944	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	2.331e^-4	0.944	INTRON CG34391
X	10047280	X_10047280_SNP [dm3] X_10153247_SNP [dm6]	T	A	2.332e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
3R	19836945	3R_19836945_SNP [dm3] 3R_24011223_SNP [dm6]	A	T	2.333e^-4	0.944	INTRON KrT95D
2R	1762091	2R_1762091_SNP [dm3] 2R_5874586_SNP [dm6]	A	T	2.335e^-4	0.944	INTERGENIC
X	4860126	X_4860126_SNP [dm3] X_4966093_SNP [dm6]	C	G	2.335e^-4	0.944	INTRON CR44833	regulatory region REDfly_CRMs
2R	16600298	2R_16600298_SNP [dm3] 2R_20712793_SNP [dm6]	G	C	2.336e^-4	0.944	INTRON dpr
X	16401489	X_16401489_SNP [dm3] X_16507456_SNP [dm6]	C	G	2.337e^-4	0.944	INTRON para
X	10047276	X_10047276_SNP [dm3] X_10153243_SNP [dm6]	C	A	2.344e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
3R	11125701	3R_11125701_SNP [dm3] 3R_15299979_SNP [dm6]	T	C	2.345e^-4	0.944	INTRON Tm1
X	5885166	X_5885166_SNP [dm3] X_5991133_SNP [dm6]	C	T	2.349e^-4	0.944	SYNONYMOUS_CODING CG5966	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1612440	2L_1612440_SNP [dm3] 2L_1612440_SNP [dm6]	C	T	2.355e^-4	0.944	UTR_3_PRIME CG14352 & 1 other DOWNSTREAM RFeSP	TF binding site mE1_TFBS_inv
2R	17930823	2R_17930823_DEL [dm3] 2R_22043318_DEL [dm6]	CGCGTGGGCGAAGCCACC...	C	2.368e^-4	0.944	UPSTREAM PpD5 INTERGENIC
2R	17510630	2R_17510630_SNP [dm3] 2R_21623125_SNP [dm6]	G	A	2.374e^-4	0.944	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13814724	2R_13814724_SNP [dm3] 2R_17927219_SNP [dm6]	A	C	2.375e^-4	0.944	DOWNSTREAM Elk INTERGENIC
X	11259976	X_11259976_SNP [dm3] X_11365943_SNP [dm6]	C	A	2.382e^-4	0.944	INTRON hop
3L	10806574	3L_10806574_SNP [dm3] 3L_10813474_SNP [dm6]	T	G	2.386e^-4	0.944	INTERGENIC
2L	11932386	2L_11932386_SNP [dm3] 2L_11932386_SNP [dm6]	C	T	2.391e^-4	0.944	INTERGENIC
2L	5025185	2L_5025185_SNP [dm3] 2L_5025185_SNP [dm6]	C	T	2.392e^-4	0.944	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	6770200	2L_6770200_SNP [dm3] 2L_6770200_SNP [dm6]	T	C	2.393e^-4	0.944	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3L	16822708	3L_16822708_SNP [dm3] 3L_16829608_SNP [dm6]	G	A	2.396e^-4	0.944	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3850968	2L_3850968_SNP [dm3] 2L_3850968_SNP [dm6]	C	T	2.399e^-4	0.944	UPSTREAM CR45451 INTERGENIC
3L	12659892	3L_12659892_SNP [dm3] 3L_12666792_SNP [dm6]	G	A	2.415e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7950845	3L_7950845_SNP [dm3] 3L_7957745_SNP [dm6]	T	C	2.416e^-4	0.944	INTERGENIC
4	86587	4_86587_DEL [dm3] 4_65961_DEL [dm6]	AA	A	2.432e^-4	0.944	UPSTREAM snoRNA:CD-24 DOWNSTREAM RpS3A INTRON RpS3A
2R	20370153	2R_20370153_SNP [dm3] 2R_24482630_SNP [dm6]	C	G	2.438e^-4	0.944	INTRON CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20370232	2R_20370232_SNP [dm3] 2R_24482709_SNP [dm6]	C	T	2.438e^-4	0.944	INTRON CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18393582	2L_18393582_SNP [dm3] 2L_18393582_SNP [dm6]	A	T	2.440e^-4	0.944	DOWNSTREAM Fas3 INTERGENIC
2R	15719183	2R_15719183_SNP [dm3] 2R_19831678_SNP [dm6]	C	G	2.450e^-4	0.944	UTR_3_PRIME Toll-7
2R	8317556	2R_8317556_SNP [dm3] 2R_12430051_SNP [dm6]	T	C	2.451e^-4	0.944	SYNONYMOUS_CODING Nup54 UPSTREAM CG43204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10047271	X_10047271_SNP [dm3] X_10153238_SNP [dm6]	C	A	2.463e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
2L	10535508	2L_10535508_SNP [dm3] 2L_10535508_SNP [dm6]	A	G	2.471e^-4	0.944	SYNONYMOUS_CODING CG18302
3L	13469211	3L_13469211_SNP [dm3] 3L_13476111_SNP [dm6]	A	G	2.472e^-4	0.944	INTERGENIC
3R	13655317	3R_13655317_SNP [dm3] 3R_17829595_SNP [dm6]	C	T	2.473e^-4	0.944	INTRON tinc
3R	13889856	3R_13889856_SNP [dm3] 3R_18064134_SNP [dm6]	T	A	2.473e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	20495239	3R_20495239_SNP [dm3] 3R_24669517_SNP [dm6]	C	T	2.477e^-4	0.944	INTRON slo	regulatory region REDfly_CRMs
3R	14063330	3R_14063330_SNP [dm3] 3R_18237608_SNP [dm6]	A	T	2.477e^-4	0.944	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1383550	3L_1383550_SNP [dm3] 3L_1383550_SNP [dm6]	A	C	2.482e^-4	0.944	INTRON Ptp61F & 1 other
2L	6953721	2L_6953721_SNP [dm3] 2L_6953721_SNP [dm6]	T	C	2.488e^-4	0.944	SYNONYMOUS_CODING SA DOWNSTREAM CG13775	TF binding site mE1_TFBS_sens
2R	18890294	2R_18890294_SNP [dm3] 2R_23002771_SNP [dm6]	C	T	2.491e^-4	0.944	INTRON twi
2R	20370946	2R_20370946_SNP [dm3] 2R_24483423_SNP [dm6]	A	G	2.509e^-4	0.944	SYNONYMOUS_CODING CG13579
2R	13123741	2R_13123741_SNP [dm3] 2R_17236236_SNP [dm6]	T	C	2.516e^-4	0.944	INTRON mbl
2L	15848186	2L_15848186_SNP [dm3] 2L_15848186_SNP [dm6]	T	C	2.517e^-4	0.944	DOWNSTREAM CR43763 INTERGENIC
2R	4500277	2R_4500277_SNP [dm3] 2R_8612772_SNP [dm6]	T	A	2.521e^-4	0.944	DOWNSTREAM rgr INTRON CG8642
3R	6721540	3R_6721540_SNP [dm3] 3R_10895818_SNP [dm6]	T	C	2.540e^-4	0.944	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3L	12084748	3L_12084748_SNP [dm3] 3L_12091648_SNP [dm6]	C	T	2.544e^-4	0.944	INTERGENIC
3R	17931594	3R_17931594_SNP [dm3] 3R_22105872_SNP [dm6]	T	C	2.544e^-4	0.944	DOWNSTREAM CG13407 INTRON CG5778
2R	1393106	2R_1393106_DEL [dm3] 2R_5505601_DEL [dm6]	CATATGC	C	2.545e^-4	0.944	INTRON CG30438 & 1 other
3R	17931607	3R_17931607_SNP [dm3] 3R_22105885_SNP [dm6]	T	A	2.552e^-4	0.944	DOWNSTREAM CG13407 INTRON CG5778
X	3660200	X_3660200_SNP [dm3] X_3766167_SNP [dm6]	G	A	2.554e^-4	0.944	INTRON tlk
3L	14248767	3L_14248767_SNP [dm3] 3L_14255667_SNP [dm6]	G	A	2.556e^-4	0.944	INTERGENIC
2R	1766156	2R_1766156_SNP [dm3] 2R_5878651_SNP [dm6]	A	G	2.558e^-4	0.944	DOWNSTREAM CG44438 INTERGENIC	transposable element FlyBase
3R	9725435	3R_9725435_SNP [dm3] 3R_13899713_SNP [dm6]	C	A	2.569e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	15329303	3R_15329303_SNP [dm3] 3R_19503581_SNP [dm6]	A	C	2.574e^-4	0.944	UPSTREAM Dys INTRON Dys
3R	17725789	3R_17725789_SNP [dm3] 3R_21900067_SNP [dm6]	T	A	2.578e^-4	0.944	INTRON CG6678
3R	16522027	3R_16522027_SNP [dm3] 3R_20696305_SNP [dm6]	T	G	2.584e^-4	0.944	INTRON Oamb
3L	15157311	3L_15157311_SNP [dm3] 3L_15164211_SNP [dm6]	A	G	2.588e^-4	0.944	UPSTREAM CG7011 INTERGENIC
3L	18679262	3L_18679262_SNP [dm3] 3L_18686162_SNP [dm6]	A	G	2.599e^-4	0.944	SYNONYMOUS_CODING Cyp12c1
3L	23447244	3L_23447244_SNP [dm3] 3L_23454144_SNP [dm6]	G	C	2.602e^-4	0.944	INTERGENIC
X	20154075	X_20154075_MNP [dm3] X_20283048_MNP [dm6]	TGGTA	GCTCC	2.606e^-4	0.944	INTERGENIC
3R	4862141	3R_4862141_SNP [dm3] 3R_9036419_SNP [dm6]	C	A	2.607e^-4	0.944	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19133016	2R_19133016_SNP [dm3] 2R_23245493_SNP [dm6]	A	C	2.609e^-4	0.944	UPSTREAM yip3 INTERGENIC
2L	11629094	2L_11629094_SNP [dm3] 2L_11629094_SNP [dm6]	T	A	2.620e^-4	0.944	INTERGENIC
2L	5789181	2L_5789181_SNP [dm3] 2L_5789181_SNP [dm6]	C	G	2.628e^-4	0.944	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13389766	3R_13389766_SNP [dm3] 3R_17564044_SNP [dm6]	T	C	2.632e^-4	0.944	INTRON Hmx
3R	20587712	3R_20587712_SNP [dm3] 3R_24761990_SNP [dm6]	C	A	2.636e^-4	0.944	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14451118	2L_14451118_SNP [dm3] 2L_14451118_SNP [dm6]	C	A	2.654e^-4	0.944	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	18700171	2R_18700171_SNP [dm3] 2R_22812666_SNP [dm6]	T	C	2.660e^-4	0.944	INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13663604	2R_13663604_SNP [dm3] 2R_17776099_SNP [dm6]	G	A	2.663e^-4	0.944	SPLICE_SITE_REGION fab1 & 1 other INTRON fab1 & 1 other	TF binding site mE1_TFBS_cad
2R	13663605	2R_13663605_SNP [dm3] 2R_17776100_SNP [dm6]	G	A	2.663e^-4	0.944	SPLICE_SITE_REGION fab1 & 1 other INTRON fab1 & 1 other	TF binding site mE1_TFBS_cad
2L	10380827	2L_10380827_SNP [dm3] 2L_10380827_SNP [dm6]	A	G	2.663e^-4	0.944	DOWNSTREAM dpr19 INTRON gny	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2R	19963287	2R_19963287_SNP [dm3] 2R_24075764_SNP [dm6]	C	T	2.667e^-4	0.944	UTR_3_PRIME Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A
3L	16822861	3L_16822861_SNP [dm3] 3L_16829761_SNP [dm6]	C	T	2.668e^-4	0.944	UPSTREAM CG13024 INTERGENIC
3L	4827792	3L_4827792_SNP [dm3] 3L_4827792_SNP [dm6]	T	C	2.679e^-4	0.944	SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo
3R	7222702	3R_7222702_SNP [dm3] 3R_11396980_SNP [dm6]	A	G	2.679e^-4	0.944	UTR_3_PRIME pros	TF binding site mE1_TFBS_HSA
3R	12717720	3R_12717720_SNP [dm3] 3R_16891998_SNP [dm6]	G	A	2.691e^-4	0.944	UPSTREAM CR43617 & 1 other INTRON iab-8 EXON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9162978	2L_9162978_SNP [dm3] 2L_9162978_SNP [dm6]	A	G	2.704e^-4	0.944	INTRON CG32982
2R	14826796	2R_14826796_SNP [dm3] 2R_18939291_SNP [dm6]	C	A	2.704e^-4	0.944	INTRON sano
2R	18317473	2R_18317473_SNP [dm3] 2R_22429968_SNP [dm6]	G	C	2.706e^-4	0.944	DOWNSTREAM ppk12 INTERGENIC
2L	9454157	2L_9454157_SNP [dm3] 2L_9454157_SNP [dm6]	G	A	2.722e^-4	0.944	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	10239883	3L_10239883_SNP [dm3] 3L_10246783_SNP [dm6]	T	C	2.737e^-4	0.944	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	663844	2L_663844_SNP [dm3] 2L_663844_SNP [dm6]	C	T	2.741e^-4	0.944	INTRON ds
3R	15329192	3R_15329192_SNP [dm3] 3R_19503470_SNP [dm6]	A	G	2.742e^-4	0.944	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3R	10543173	3R_10543173_INS [dm3] 3R_14717451_INS [dm6]	G	GTTTCTCAGTTTGTATGCCT...	2.757e^-4	0.944	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17510714	2R_17510714_SNP [dm3] 2R_21623209_SNP [dm6]	A	G	2.767e^-4	0.944	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10835193	2L_10835193_SNP [dm3] 2L_10835193_SNP [dm6]	A	G	2.775e^-4	0.944	INTRON Nos
2L	20051826	2L_20051826_SNP [dm3] 2L_20051826_SNP [dm6]	T	C	2.776e^-4	0.944	INTRON sNPF
3L	17342421	3L_17342421_SNP [dm3] 3L_17349321_SNP [dm6]	G	C	2.789e^-4	0.944	INTRON Mip	TF binding site BDTNP1_TFBS_dl
X	10047325	X_10047325_SNP [dm3] X_10153292_SNP [dm6]	C	T	2.790e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	2.805e^-4	0.944	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5704271	3L_5704271_SNP [dm3] 3L_5711171_SNP [dm6]	A	G	2.812e^-4	0.944	INTRON sif
3L	18687860	3L_18687860_SNP [dm3] 3L_18694760_SNP [dm6]	C	T	2.832e^-4	0.944	SPLICE_SITE_REGION CG6893 UPSTREAM CR43987 INTRON CG6893
2R	16922771	2R_16922771_SNP [dm3] 2R_21035266_SNP [dm6]	C	T	2.843e^-4	0.944	INTERGENIC
2R	13814743	2R_13814743_SNP [dm3] 2R_17927238_SNP [dm6]	T	C	2.846e^-4	0.944	DOWNSTREAM Elk INTERGENIC
3R	20167722	3R_20167722_SNP [dm3] 3R_24342000_SNP [dm6]	G	A	2.853e^-4	0.944	UPSTREAM Ms INTRON Ms
X	10883491	X_10883491_SNP [dm3] X_10989458_SNP [dm6]	G	T	2.862e^-4	0.944	INTRON CG42339
3L	8542205	3L_8542205_DEL [dm3] 3L_8549105_DEL [dm6]	GAAG	G	2.862e^-4	0.944	INTRON rhea	TF binding site BDTNP1_TFBS_twi
X	10047304	X_10047304_SNP [dm3] X_10153271_SNP [dm6]	A	G	2.870e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
2R	18700172	2R_18700172_SNP [dm3] 2R_22812667_SNP [dm6]	C	T	2.873e^-4	0.944	INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19833079	2L_19833079_SNP [dm3] 2L_19833079_SNP [dm6]	A	G	2.881e^-4	0.944	INTRON sick
3L	11163145	3L_11163145_SNP [dm3] 3L_11170045_SNP [dm6]	T	C	2.883e^-4	0.944	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	13535338	3R_13535338_SNP [dm3] 3R_17709616_SNP [dm6]	G	A	2.886e^-4	0.944	INTRON osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14018226	2R_14018226_SNP [dm3] 2R_18130721_SNP [dm6]	A	G	2.891e^-4	0.944	UTR_3_PRIME Hsf DOWNSTREAM Dip3
X	8079686	X_8079686_SNP [dm3] X_8185653_SNP [dm6]	T	A	2.896e^-4	0.944	INTRON sdt
3L	8474442	3L_8474442_SNP [dm3] 3L_8481342_SNP [dm6]	G	A	2.903e^-4	0.944	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8470875	3L_8470875_SNP [dm3] 3L_8477775_SNP [dm6]	A	T	2.906e^-4	0.944	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15499445	X_15499445_SNP [dm3] X_15605412_SNP [dm6]	T	C	2.908e^-4	0.944	INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	13205158	X_13205158_SNP [dm3] X_13311125_SNP [dm6]	T	C	2.912e^-4	0.944	INTRON IP3K2
2L	11352911	2L_11352911_SNP [dm3] 2L_11352911_SNP [dm6]	T	G	2.915e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	10090612	2R_10090612_SNP [dm3] 2R_14203107_SNP [dm6]	T	C	2.916e^-4	0.944	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16919935	2R_16919935_SNP [dm3] 2R_21032430_SNP [dm6]	A	T	2.919e^-4	0.944	INTERGENIC
2L	10051208	2L_10051208_SNP [dm3] 2L_10051208_SNP [dm6]	A	G	2.922e^-4	0.944	UPSTREAM CR44874 DOWNSTREAM CG33301 INTERGENIC
3R	9365938	3R_9365938_SNP [dm3] 3R_13540216_SNP [dm6]	C	A	2.928e^-4	0.944	INTERGENIC
2R	17098380	2R_17098380_DEL [dm3] 2R_21210875_DEL [dm6]	ACA	A	2.928e^-4	0.944	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	1393105	2R_1393105_SNP [dm3] 2R_5505600_SNP [dm6]	G	C	2.929e^-4	0.944	INTRON CG30438 & 1 other
3L	10821774	3L_10821774_DEL [dm3] 3L_10828674_DEL [dm6]	AA	A	2.934e^-4	0.944	INTERGENIC
3L	19418953	3L_19418953_SNP [dm3] 3L_19425853_SNP [dm6]	G	T	2.950e^-4	0.944	DOWNSTREAM CR42838 INTERGENIC
X	10047324	X_10047324_SNP [dm3] X_10153291_SNP [dm6]	G	A	2.952e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
3L	11855813	3L_11855813_SNP [dm3] 3L_11862713_SNP [dm6]	T	A	2.956e^-4	0.944	SYNONYMOUS_CODING CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14097889	3L_14097889_SNP [dm3] 3L_14104789_SNP [dm6]	C	A	2.959e^-4	0.944	NON_SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3584749	3L_3584749_SNP [dm3] 3L_3584749_SNP [dm6]	G	C	2.967e^-4	0.944	INTRON Eip63E
3R	19471309	3R_19471309_SNP [dm3] 3R_23645587_SNP [dm6]	A	T	2.973e^-4	0.944	INTRON CG31145	TF binding site mE1_TFBS_chinmo
2L	15859924	2L_15859924_SNP [dm3] 2L_15859924_SNP [dm6]	T	C	2.976e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12152505	3R_12152505_SNP [dm3] 3R_16326783_SNP [dm6]	C	T	2.983e^-4	0.944	SYNONYMOUS_CODING CG17929 INTRON Sulf1
2R	12155491	2R_12155491_SNP [dm3] 2R_16267986_SNP [dm6]	T	C	2.994e^-4	0.944	SYNONYMOUS_CODING Khc	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	20807355	3R_20807355_SNP [dm3] 3R_24981633_SNP [dm6]	G	T	2.999e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12958903	2L_12958903_DEL [dm3] 2L_12958903_DEL [dm6]	TCCT	T	2.999e^-4	0.944	INTERGENIC
2L	18759659	2L_18759659_SNP [dm3] 2L_18759659_SNP [dm6]	A	G	3.004e^-4	0.944	INTERGENIC
2R	17550285	2R_17550285_SNP [dm3] 2R_21662780_SNP [dm6]	A	T	3.006e^-4	0.944	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
3L	13691281	3L_13691281_SNP [dm3] 3L_13698181_SNP [dm6]	G	T	3.008e^-4	0.944	INTRON bru-3
X	3726617	X_3726617_SNP [dm3] X_3832584_SNP [dm6]	G	C	3.012e^-4	0.944	INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	11372906	2L_11372906_SNP [dm3] 2L_11372906_SNP [dm6]	C	T	3.021e^-4	0.944	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo
X	7308371	X_7308371_INS [dm3] X_7414338_INS [dm6]	T	TATTTT	3.026e^-4	0.944	UTR_3_PRIME CG42705 DOWNSTREAM CG42705
2R	9914177	2R_9914177_SNP [dm3] 2R_14026672_SNP [dm6]	A	G	3.028e^-4	0.944	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	3590313	3L_3590313_SNP [dm3] 3L_3590313_SNP [dm6]	C	T	3.030e^-4	0.944	INTRON Eip63E
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	3.032e^-4	0.944	DOWNSTREAM CG42322 INTRON CG42322
2R	12086762	2R_12086762_SNP [dm3] 2R_16199257_SNP [dm6]	A	G	3.033e^-4	0.944	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark	TF binding site mE1_TFBS_cad
3R	16918199	3R_16918199_SNP [dm3] 3R_21092477_SNP [dm6]	A	C	3.040e^-4	0.944	INTRON RhoGAP93B & 1 other
2L	11030650	2L_11030650_SNP [dm3] 2L_11030650_SNP [dm6]	T	G	3.046e^-4	0.944	UTR_3_PRIME Samuel INTRON Samuel	TF binding site mE1_TFBS_cad
2L	4116286	2L_4116286_SNP [dm3] 2L_4116286_SNP [dm6]	C	A	3.048e^-4	0.944	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25533916	3R_25533916_SNP [dm3] 3R_29708194_SNP [dm6]	T	C	3.052e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16036527	3R_16036527_SNP [dm3] 3R_20210805_SNP [dm6]	C	T	3.062e^-4	0.944	INTRON Nlg4
X	21279478	X_21279478_SNP [dm3] X_21408451_SNP [dm6]	T	G	3.064e^-4	0.944	DOWNSTREAM CR45003 INTERGENIC
3R	13637922	3R_13637922_SNP [dm3] 3R_17812200_SNP [dm6]	G	A	3.067e^-4	0.944	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	16320023	2R_16320023_SNP [dm3] 2R_20432518_SNP [dm6]	A	G	3.072e^-4	0.944	INTRON CG12484
2L	7220321	2L_7220321_SNP [dm3] 2L_7220321_SNP [dm6]	A	G	3.081e^-4	0.944	UPSTREAM CR44989 & 1 other DOWNSTREAM ico INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11313164	2R_11313164_SNP [dm3] 2R_15425659_SNP [dm6]	T	A	3.095e^-4	0.944	UTR_5_PRIME CG43729 INTRON CG43729	TF binding site mE1_TFBS_HSA
4	64737	4_64737_SNP [dm3] 4_44111_SNP [dm6]	C	G	3.098e^-4	0.944	UPSTREAM CR44440 & 1 other DOWNSTREAM CR45124 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4387612	3R_4387612_SNP [dm3] 3R_8561890_SNP [dm6]	A	G	3.115e^-4	0.944	UPSTREAM CG31460 & 1 other DOWNSTREAM mRpS18A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	9369593	3R_9369593_INS [dm3] 3R_13543871_INS [dm6]	T	TAAAGTAAAG	3.119e^-4	0.944	DOWNSTREAM CG31337 INTERGENIC
3L	18681788	3L_18681788_SNP [dm3] 3L_18688688_SNP [dm6]	G	A	3.126e^-4	0.944	INTERGENIC
2R	16912754	2R_16912754_SNP [dm3] 2R_21025249_SNP [dm6]	T	A	3.127e^-4	0.944	DOWNSTREAM RIC-3 INTRON CG9350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
X	10047311	X_10047311_SNP [dm3] X_10153278_SNP [dm6]	C	A	3.128e^-4	0.944	UPSTREAM CG12645 INTRON CR44894
2R	20561199	2R_20561199_SNP [dm3] 2R_24673676_SNP [dm6]	G	C	3.138e^-4	0.944	DOWNSTREAM Mmp1 INTRON Mmp1
2R	20565324	2R_20565324_SNP [dm3] 2R_24677801_SNP [dm6]	A	G	3.138e^-4	0.944	INTRON Mmp1
3R	17725651	3R_17725651_SNP [dm3] 3R_21899929_SNP [dm6]	A	T	3.160e^-4	0.944	INTRON CG6678
3L	14741923	3L_14741923_SNP [dm3] 3L_14748823_SNP [dm6]	T	C	3.160e^-4	0.944	SYNONYMOUS_CODING CG42507 UTR_3_PRIME Trl DOWNSTREAM ome	TF binding site mE1_TFBS_chinmo
2L	2897122	2L_2897122_INS [dm3] 2L_2897122_INS [dm6]	T	TT	3.172e^-4	0.944	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14116860	3L_14116860_SNP [dm3] 3L_14123760_SNP [dm6]	G	C	3.176e^-4	0.944	INTRON Sox21b
3L	3076530	3L_3076530_SNP [dm3] 3L_3076530_SNP [dm6]	A	G	3.179e^-4	0.944	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17855405	2R_17855405_SNP [dm3] 2R_21967900_SNP [dm6]	G	A	3.181e^-4	0.944	SYNONYMOUS_CODING ppk9
3R	10298469	3R_10298469_SNP [dm3] 3R_14472747_SNP [dm6]	T	C	3.182e^-4	0.944	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9183704	3L_9183704_SNP [dm3] 3L_9190604_SNP [dm6]	G	A	3.191e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4524941	2R_4524941_SNP [dm3] 2R_8637436_SNP [dm6]	G	A	3.195e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7293244	3L_7293244_SNP [dm3] 3L_7300144_SNP [dm6]	T	G	3.199e^-4	0.944	INTRON unc-13-4A
3L	6796747	3L_6796747_SNP [dm3] 3L_6803647_SNP [dm6]	G	C	3.201e^-4	0.944	INTERGENIC
2L	15868157	2L_15868157_SNP [dm3] 2L_15868157_SNP [dm6]	G	A	3.203e^-4	0.944	INTERGENIC
3L	19415918	3L_19415918_SNP [dm3] 3L_19422818_SNP [dm6]	A	T	3.206e^-4	0.944	UPSTREAM CG33255 DOWNSTREAM CR32205 INTERGENIC
2L	4650836	2L_4650836_SNP [dm3] 2L_4650836_SNP [dm6]	A	G	3.208e^-4	0.944	UPSTREAM CG3355 INTERGENIC
3R	12279333	3R_12279333_SNP [dm3] 3R_16453611_SNP [dm6]	G	T	3.215e^-4	0.944	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279648	3R_12279648_SNP [dm3] 3R_16453926_SNP [dm6]	A	T	3.215e^-4	0.944	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15499437	X_15499437_SNP [dm3] X_15605404_SNP [dm6]	C	A	3.223e^-4	0.944	INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25280762	3R_25280762_SNP [dm3] 3R_29455040_SNP [dm6]	G	T	3.225e^-4	0.944	INTRON Ptp99A
2L	15969520	2L_15969520_SNP [dm3] 2L_15969520_SNP [dm6]	A	C	3.228e^-4	0.944	INTERGENIC
3L	18580026	3L_18580026_SNP [dm3] 3L_18586926_SNP [dm6]	T	A	3.241e^-4	0.944	INTERGENIC
3L	19645823	3L_19645823_SNP [dm3] 3L_19652723_SNP [dm6]	A	C	3.242e^-4	0.944	NON_SYNONYMOUS_CODING tey	TF binding site mE1_TFBS_cad
2R	15715135	2R_15715135_SNP [dm3] 2R_19827630_SNP [dm6]	C	T	3.248e^-4	0.944	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19029937	X_19029937_INS [dm3] X_19135904_INS [dm6]	C	CCC	3.250e^-4	0.944	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
3L	1700469	3L_1700469_SNP [dm3] 3L_1700469_SNP [dm6]	T	A	3.252e^-4	0.944	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14104459	3L_14104459_INS [dm3] 3L_14111359_INS [dm6]	T	TT	3.259e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18506050	2L_18506050_SNP [dm3] 2L_18506050_SNP [dm6]	T	C	3.259e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19833096	2L_19833096_SNP [dm3] 2L_19833096_SNP [dm6]	T	C	3.260e^-4	0.944	INTRON sick
2L	12952180	2L_12952180_SNP [dm3] 2L_12952180_SNP [dm6]	A	T	3.263e^-4	0.944	INTERGENIC
3L	1938706	3L_1938706_INS [dm3] 3L_1938706_INS [dm6]	C	CC	3.267e^-4	0.944	UTR_5_PRIME CG5687 DOWNSTREAM CR44536
3R	9537249	3R_9537249_SNP [dm3] 3R_13711527_SNP [dm6]	A	C	3.267e^-4	0.944	NON_SYNONYMOUS_CODING primo-2 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11917686	X_11917686_SNP [dm3] X_12023653_SNP [dm6]	C	T	3.274e^-4	0.944	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
3R	12270408	3R_12270408_SNP [dm3] 3R_16444686_SNP [dm6]	A	T	3.278e^-4	0.944	NON_SYNONYMOUS_CODING CG14882 DOWNSTREAM Pak3
2R	12155722	2R_12155722_SNP [dm3] 2R_16268217_SNP [dm6]	G	A	3.282e^-4	0.944	SYNONYMOUS_CODING Khc	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10515823	2R_10515823_SNP [dm3] 2R_14628318_SNP [dm6]	G	A	3.285e^-4	0.944	INTERGENIC
2L	14833820	2L_14833820_SNP [dm3] 2L_14833820_SNP [dm6]	T	G	3.288e^-4	0.944	INTERGENIC
2L	12957810	2L_12957810_SNP [dm3] 2L_12957810_SNP [dm6]	T	C	3.299e^-4	0.944	INTERGENIC
3R	25122963	3R_25122963_SNP [dm3] 3R_29297241_SNP [dm6]	C	T	3.301e^-4	0.944	UPSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	16159518	X_16159518_SNP [dm3] X_16265485_SNP [dm6]	T	G	3.305e^-4	0.944	SYNONYMOUS_CODING CG12507
3L	13470157	3L_13470157_DEL [dm3] 3L_13477057_DEL [dm6]	AACCGT	A	3.308e^-4	0.944	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18021628	3R_18021628_SNP [dm3] 3R_22195906_SNP [dm6]	C	T	3.312e^-4	0.944	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8468240	3L_8468240_SNP [dm3] 3L_8475140_SNP [dm6]	C	T	3.319e^-4	0.944	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13655493	3R_13655493_SNP [dm3] 3R_17829771_SNP [dm6]	T	C	3.320e^-4	0.944	INTRON tinc
2R	7342819	2R_7342819_SNP [dm3] 2R_11455314_SNP [dm6]	A	T	3.331e^-4	0.944	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20154043	X_20154043_SNP [dm3] X_20283016_SNP [dm6]	G	C	3.335e^-4	0.944	INTERGENIC
2R	10090767	2R_10090767_DEL [dm3] 2R_14203262_DEL [dm6]	AC	A	3.343e^-4	0.944	INTRON Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10556724	3L_10556724_SNP [dm3] 3L_10563624_SNP [dm6]	A	C	3.345e^-4	0.944	INTRON A2bp1
2L	16049421	2L_16049421_DEL [dm3] 2L_16049421_DEL [dm6]	AA	A	3.351e^-4	0.944	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20580540	2R_20580540_SNP [dm3] 2R_24693017_SNP [dm6]	C	T	3.353e^-4	0.944	NON_SYNONYMOUS_CODING ST6Gal	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3658783	X_3658783_SNP [dm3] X_3764750_SNP [dm6]	G	A	3.357e^-4	0.944	INTRON tlk
3L	2544395	3L_2544395_DEL [dm3] 3L_2544395_DEL [dm6]	CCGTTTCTACT...	C	3.367e^-4	0.944	INTRON Spn
2L	7217165	2L_7217165_SNP [dm3] 2L_7217165_SNP [dm6]	G	T	3.367e^-4	0.944	INTRON CG13784	TF binding site BDTNP1_TFBS_Med
X	20929227	X_20929227_SNP [dm3] X_21058200_SNP [dm6]	C	T	3.369e^-4	0.944	INTRON bves
3R	20587726	3R_20587726_SNP [dm3] 3R_24762004_SNP [dm6]	G	T	3.398e^-4	0.944	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9850577	3L_9850577_SNP [dm3] 3L_9857477_SNP [dm6]	A	T	3.401e^-4	0.944	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12279649	3R_12279649_SNP [dm3] 3R_16453927_SNP [dm6]	A	T	3.410e^-4	0.944	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19870250	2R_19870250_SNP [dm3] 2R_23982727_SNP [dm6]	A	T	3.420e^-4	0.944	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	14614585	X_14614585_SNP [dm3] X_14720552_SNP [dm6]	T	C	3.423e^-4	0.944	INTRON NetB
2R	10346857	2R_10346857_SNP [dm3] 2R_14459352_SNP [dm6]	A	T	3.426e^-4	0.944	INTRON Oaz
3R	19673875	3R_19673875_DEL [dm3] 3R_23848153_DEL [dm6]	AT	C	3.440e^-4	0.944	INTRON CG34355	TF binding site mE1_TFBS_cad
3L	11575813	3L_11575813_SNP [dm3] 3L_11582713_SNP [dm6]	G	C	3.441e^-4	0.944	NON_SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3L	3763539	3L_3763539_SNP [dm3] 3L_3763539_SNP [dm6]	A	G	3.444e^-4	0.944	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17725810	3R_17725810_SNP [dm3] 3R_21900088_SNP [dm6]	T	C	3.445e^-4	0.944	INTRON CG6678
2L	18130942	2L_18130942_SNP [dm3] 2L_18130942_SNP [dm6]	T	C	3.449e^-4	0.944	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3R	9038132	3R_9038132_SNP [dm3] 3R_13212410_SNP [dm6]	G	C	3.451e^-4	0.944	INTRON CG8483
2L	6950373	2L_6950373_SNP [dm3] 2L_6950373_SNP [dm6]	T	G	3.458e^-4	0.944	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11227272	2L_11227272_SNP [dm3] 2L_11227272_SNP [dm6]	A	C	3.459e^-4	0.944	INTRON ab
3R	15329965	3R_15329965_SNP [dm3] 3R_19504243_SNP [dm6]	G	C	3.480e^-4	0.944	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20485434	2R_20485434_SNP [dm3] 2R_24597911_SNP [dm6]	C	A	3.482e^-4	0.944	UPSTREAM CG13587 DOWNSTREAM pio INTERGENIC
3R	10543178	3R_10543178_SNP [dm3] 3R_14717456_SNP [dm6]	T	C	3.482e^-4	0.944	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19575351	2R_19575351_SNP [dm3] 2R_23687828_SNP [dm6]	T	G	3.488e^-4	0.944	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
X	17478660	X_17478660_SNP [dm3] X_17584627_SNP [dm6]	T	C	3.490e^-4	0.944	INTRON CG12991
2R	5293203	2R_5293203_DEL [dm3] 2R_9405698_DEL [dm6]	AA	A	3.501e^-4	0.944	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13181603	3L_13181603_DEL [dm3] 3L_13188503_DEL [dm6]	AAAG	A	3.506e^-4	0.944	INTERGENIC
X	6856639	X_6856639_SNP [dm3] X_6962606_SNP [dm6]	C	A	3.507e^-4	0.944	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site mE1_TFBS_chinmo
2L	20862615	2L_20862615_SNP [dm3] 2L_20862615_SNP [dm6]	T	G	3.508e^-4	0.944	EXON CR9337
3L	2740411	3L_2740411_SNP [dm3] 3L_2740411_SNP [dm6]	G	A	3.510e^-4	0.944	DOWNSTREAM Acp62F INTRON Mrtf
2L	5929673	2L_5929673_SNP [dm3] 2L_5929673_SNP [dm6]	A	T	3.521e^-4	0.944	INTRON dsf
2R	7148510	2R_7148510_SNP [dm3] 2R_11261005_SNP [dm6]	G	T	3.525e^-4	0.944	DOWNSTREAM Cpr47Ed INTERGENIC
2R	18732982	2R_18732982_SNP [dm3] 2R_22845459_SNP [dm6]	C	T	3.529e^-4	0.944	UPSTREAM CG3649 INTERGENIC
2L	8876730	2L_8876730_SNP [dm3] 2L_8876730_SNP [dm6]	C	T	3.530e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	16829326	3L_16829326_SNP [dm3] 3L_16836226_SNP [dm6]	G	T	3.544e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16597460	2L_16597460_SNP [dm3] 2L_16597460_SNP [dm6]	G	A	3.544e^-4	0.944	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18889414	2R_18889414_SNP [dm3] 2R_23001891_SNP [dm6]	T	C	3.551e^-4	0.944	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7342898	2R_7342898_SNP [dm3] 2R_11455393_SNP [dm6]	T	G	3.556e^-4	0.944	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12354466	3R_12354466_SNP [dm3] 3R_16528744_SNP [dm6]	T	C	3.573e^-4	0.944	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13277732	2L_13277732_SNP [dm3] 2L_13277732_SNP [dm6]	A	T	3.575e^-4	0.944	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12668373	3L_12668373_SNP [dm3] 3L_12675273_SNP [dm6]	T	A	3.582e^-4	0.944	INTERGENIC
3L	2559068	3L_2559068_SNP [dm3] 3L_2559068_SNP [dm6]	T	G	3.586e^-4	0.944	INTRON msn
2R	20485564	2R_20485564_SNP [dm3] 2R_24598041_SNP [dm6]	T	A	3.589e^-4	0.944	NON_SYNONYMOUS_CODING CG13587 DOWNSTREAM pio
2R	14408186	2R_14408186_SNP [dm3] 2R_18520681_SNP [dm6]	G	A	3.593e^-4	0.944	INTRON CG43066	TF binding site mE1_TFBS_chinmo
3R	11142212	3R_11142212_SNP [dm3] 3R_15316490_SNP [dm6]	C	T	3.593e^-4	0.944	START_GAINED CG14866 UTR_5_PRIME CG14866	TF binding site mE1_TFBS_HSA
2R	20519006	2R_20519006_SNP [dm3] 2R_24631483_SNP [dm6]	G	A	3.595e^-4	0.944	NON_SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787
2R	10346831	2R_10346831_SNP [dm3] 2R_14459326_SNP [dm6]	G	C	3.599e^-4	0.944	INTRON Oaz
2R	18733175	2R_18733175_SNP [dm3] 2R_22845652_SNP [dm6]	A	G	3.601e^-4	0.944	UPSTREAM CG3649 INTERGENIC
2R	9184372	2R_9184372_SNP [dm3] 2R_13296867_SNP [dm6]	T	C	3.611e^-4	0.944	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
3R	12279507	3R_12279507_SNP [dm3] 3R_16453785_SNP [dm6]	G	C	3.617e^-4	0.944	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19876095	2R_19876095_SNP [dm3] 2R_23988572_SNP [dm6]	C	T	3.618e^-4	0.944	UPSTREAM Pask & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	6077571	2R_6077571_SNP [dm3] 2R_10190066_SNP [dm6]	T	C	3.621e^-4	0.944	INTRON KCNQ
2L	20473061	2L_20473061_SNP [dm3] 2L_20473061_SNP [dm6]	G	A	3.626e^-4	0.944	NON_SYNONYMOUS_CODING CG43233 UTR_3_PRIME CG43233 INTRON CR44980
3L	5824800	3L_5824800_INS [dm3] 3L_5831700_INS [dm6]	T	TT	3.626e^-4	0.944	INTRON vn
3L	11163142	3L_11163142_SNP [dm3] 3L_11170042_SNP [dm6]	G	C	3.631e^-4	0.944	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20578215	2R_20578215_SNP [dm3] 2R_24690692_SNP [dm6]	T	G	3.634e^-4	0.944	DOWNSTREAM ST6Gal INTERGENIC
2R	11066182	2R_11066182_INS [dm3] 2R_15178677_INS [dm6]	C	CA	3.638e^-4	0.944	INTRON igl
2R	18750245	2R_18750245_SNP [dm3] 2R_22862722_SNP [dm6]	A	G	3.638e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7604610	X_7604610_SNP [dm3] X_7710577_SNP [dm6]	G	T	3.640e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6558785	3L_6558785_SNP [dm3] 3L_6565685_SNP [dm6]	T	C	3.644e^-4	0.944	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15540106	3L_15540106_SNP [dm3] 3L_15547006_SNP [dm6]	G	C	3.646e^-4	0.944	INTRON CrebA
2L	11909023	2L_11909023_SNP [dm3] 2L_11909023_SNP [dm6]	G	C	3.649e^-4	0.944	INTRON Pde1c
2L	18385607	2L_18385607_SNP [dm3] 2L_18385607_SNP [dm6]	G	A	3.652e^-4	0.944	INTRON Fas3
2R	3733917	2R_3733917_SNP [dm3] 2R_7846412_SNP [dm6]	T	A	3.659e^-4	0.944	INTRON Dgk
2L	18356390	2L_18356390_SNP [dm3] 2L_18356390_SNP [dm6]	C	T	3.661e^-4	0.944	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	19548119	2R_19548119_SNP [dm3] 2R_23660596_SNP [dm6]	T	G	3.667e^-4	0.944	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9959167	2L_9959167_SNP [dm3] 2L_9959167_SNP [dm6]	T	C	3.668e^-4	0.944	NON_SYNONYMOUS_CODING CG4658 DOWNSTREAM CG5850 & 1 other INTRON CG4658
3R	21373552	3R_21373552_SNP [dm3] 3R_25547830_SNP [dm6]	G	C	3.670e^-4	0.944	INTRON msi
3L	5252043	3L_5252043_SNP [dm3] 3L_5258943_SNP [dm6]	T	A	3.697e^-4	0.944	INTRON shep
3L	5824828	3L_5824828_SNP [dm3] 3L_5831728_SNP [dm6]	C	T	3.702e^-4	0.944	INTRON vn
2R	20519712	2R_20519712_SNP [dm3] 2R_24632189_SNP [dm6]	G	A	3.723e^-4	0.944	NON_SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787	TF binding site mE1_TFBS_cad
3L	8628082	3L_8628082_SNP [dm3] 3L_8634982_SNP [dm6]	C	T	3.727e^-4	0.944	UPSTREAM Cdc6 INTRON Zasp66
2L	10835177	2L_10835177_INS [dm3] 2L_10835177_INS [dm6]	A	AGAA	3.729e^-4	0.944	INTRON Nos
2L	10835182	2L_10835182_SNP [dm3] 2L_10835182_SNP [dm6]	T	G	3.729e^-4	0.944	INTRON Nos
2L	9964079	2L_9964079_SNP [dm3] 2L_9964079_SNP [dm6]	G	A	3.739e^-4	0.944	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
3R	7358010	3R_7358010_SNP [dm3] 3R_11532288_SNP [dm6]	C	A	3.756e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20929310	X_20929310_DEL [dm3] X_21058283_DEL [dm6]	TG	T	3.757e^-4	0.944	INTRON bves
3L	9479873	3L_9479873_SNP [dm3] 3L_9486773_SNP [dm6]	T	G	3.762e^-4	0.944	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7269310	2R_7269310_SNP [dm3] 2R_11381805_SNP [dm6]	A	G	3.763e^-4	0.944	SYNONYMOUS_CODING Sod3
3L	13150318	3L_13150318_SNP [dm3] 3L_13157218_SNP [dm6]	C	T	3.770e^-4	0.944	INTERGENIC
2R	15951994	2R_15951994_SNP [dm3] 2R_20064489_SNP [dm6]	C	T	3.777e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	1393382	2R_1393382_SNP [dm3] 2R_5505877_SNP [dm6]	T	A	3.779e^-4	0.944	INTRON CG30438 & 1 other
2L	3862334	2L_3862334_SNP [dm3] 2L_3862334_SNP [dm6]	A	C	3.782e^-4	0.944	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16917799	3R_16917799_SNP [dm3] 3R_21092077_SNP [dm6]	G	T	3.789e^-4	0.944	INTRON RhoGAP93B & 1 other
3R	16042693	3R_16042693_SNP [dm3] 3R_20216971_SNP [dm6]	G	A	3.793e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11176963	2L_11176963_SNP [dm3] 2L_11176963_SNP [dm6]	A	C	3.793e^-4	0.944	INTRON Ca-beta
3R	16042447	3R_16042447_SNP [dm3] 3R_20216725_SNP [dm6]	A	T	3.794e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16042509	3R_16042509_SNP [dm3] 3R_20216787_SNP [dm6]	T	C	3.794e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16042511	3R_16042511_SNP [dm3] 3R_20216789_SNP [dm6]	G	C	3.794e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14589930	2R_14589930_SNP [dm3] 2R_18702425_SNP [dm6]	C	T	3.801e^-4	0.944	DOWNSTREAM Sik3 INTRON Sik3	TF binding site mE1_TFBS_HSA
3L	6796482	3L_6796482_SNP [dm3] 3L_6803382_SNP [dm6]	T	A	3.802e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
X	10431252	X_10431252_SNP [dm3] X_10537219_SNP [dm6]	A	G	3.806e^-4	0.944	INTRON spri	TF binding site mE1_TFBS_inv
3R	19836898	3R_19836898_SNP [dm3] 3R_24011176_SNP [dm6]	G	T	3.809e^-4	0.944	INTRON KrT95D
2L	3134377	2L_3134377_SNP [dm3] 2L_3134377_SNP [dm6]	A	G	3.819e^-4	0.944	INTRON toc
3L	385388	3L_385388_SNP [dm3] 3L_385388_SNP [dm6]	G	A	3.821e^-4	0.944	INTRON trh
2R	13301257	2R_13301257_SNP [dm3] 2R_17413752_SNP [dm6]	G	A	3.828e^-4	0.944	UTR_3_PRIME Prosalpha5 DOWNSTREAM cnk	TF binding site mE1_TFBS_HSA
2L	7483966	2L_7483966_SNP [dm3] 2L_7483966_SNP [dm6]	A	C	3.840e^-4	0.944	INTRON Ziz
2R	10716177	2R_10716177_SNP [dm3] 2R_14828672_SNP [dm6]	T	C	3.846e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14592332	3R_14592332_MNP [dm3] 3R_18766610_MNP [dm6]	CGG	GAT	3.849e^-4	0.944	INTRON CG7720
2R	17374665	2R_17374665_SNP [dm3] 2R_21487160_SNP [dm6]	G	T	3.856e^-4	0.944	DOWNSTREAM Fkbp14 & 1 other INTERGENIC
3R	19277528	3R_19277528_SNP [dm3] 3R_23451806_SNP [dm6]	A	G	3.858e^-4	0.944	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
3R	9066054	3R_9066054_SNP [dm3] 3R_13240332_SNP [dm6]	G	A	3.865e^-4	0.944	INTRON Ace
3R	13800577	3R_13800577_SNP [dm3] 3R_17974855_SNP [dm6]	C	T	3.868e^-4	0.944	INTRON cpo
X	20153929	X_20153929_SNP [dm3] X_20282902_SNP [dm6]	T	C	3.869e^-4	0.944	INTERGENIC
2R	1392847	2R_1392847_SNP [dm3] 2R_5505342_SNP [dm6]	G	T	3.875e^-4	0.944	INTRON CG30438 & 1 other
3R	17771306	3R_17771306_SNP [dm3] 3R_21945584_SNP [dm6]	A	T	3.877e^-4	0.944	INTERGENIC
X	10448808	X_10448808_SNP [dm3] X_10554775_SNP [dm6]	G	T	3.880e^-4	0.944	INTRON spri
2L	10488712	2L_10488712_SNP [dm3] 2L_10488712_SNP [dm6]	T	C	3.887e^-4	0.944	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22885960	3R_22885960_SNP [dm3] 3R_27060238_SNP [dm6]	C	T	3.893e^-4	0.944	INTRON Nep5
2L	10835220	2L_10835220_SNP [dm3] 2L_10835220_SNP [dm6]	A	T	3.894e^-4	0.944	INTRON Nos
3R	10866601	3R_10866601_SNP [dm3] 3R_15040879_SNP [dm6]	A	G	3.902e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8440563	X_8440563_SNP [dm3] X_8546530_SNP [dm6]	C	T	3.902e^-4	0.944	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14614796	X_14614796_SNP [dm3] X_14720763_SNP [dm6]	C	T	3.904e^-4	0.944	INTRON NetB
3R	23648961	3R_23648961_SNP [dm3] 3R_27823239_SNP [dm6]	C	T	3.905e^-4	0.944	INTRON CG34353
3R	13936744	3R_13936744_SNP [dm3] 3R_18111022_SNP [dm6]	A	G	3.906e^-4	0.944	INTRON sr	TF binding site mE1_TFBS_HSA
2R	10074949	2R_10074949_SNP [dm3] 2R_14187444_SNP [dm6]	A	G	3.911e^-4	0.944	INTRON CG30069
3R	21373550	3R_21373550_SNP [dm3] 3R_25547828_SNP [dm6]	A	T	3.915e^-4	0.944	INTRON msi
3L	11575809	3L_11575809_SNP [dm3] 3L_11582709_SNP [dm6]	A	T	3.920e^-4	0.944	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3R	19564670	3R_19564670_SNP [dm3] 3R_23738948_SNP [dm6]	C	A	3.925e^-4	0.944	INTRON Hmgcr
3L	13149990	3L_13149990_INS [dm3] 3L_13156890_INS [dm6]	C	CATGGCCACAATTTACTTCA...	3.929e^-4	0.944	INTERGENIC
2L	14452560	2L_14452560_SNP [dm3] 2L_14452560_SNP [dm6]	A	T	3.931e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13638797	3R_13638797_SNP [dm3] 3R_17813075_SNP [dm6]	T	C	3.932e^-4	0.944	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	18296090	2R_18296090_SNP [dm3] 2R_22408585_SNP [dm6]	G	A	3.935e^-4	0.944	UTR_5_PRIME ventrally-expressed-protein-D UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1996567	2L_1996567_SNP [dm3] 2L_1996567_SNP [dm6]	G	C	3.940e^-4	0.944	DOWNSTREAM CG33543 INTERGENIC
3L	1069914	3L_1069914_SNP [dm3] 3L_1069914_SNP [dm6]	G	A	3.943e^-4	0.944	INTRON bab1
3L	8873469	3L_8873469_SNP [dm3] 3L_8880369_SNP [dm6]	C	T	3.946e^-4	0.944	INTRON dally
3R	9725275	3R_9725275_SNP [dm3] 3R_13899553_SNP [dm6]	T	A	3.947e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	15727362	3L_15727362_SNP [dm3] 3L_15734262_SNP [dm6]	C	T	3.956e^-4	0.944	INTERGENIC
2L	14452556	2L_14452556_SNP [dm3] 2L_14452556_SNP [dm6]	T	A	3.961e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17757263	3L_17757263_SNP [dm3] 3L_17764163_SNP [dm6]	G	C	3.965e^-4	0.944	UPSTREAM Adgf-A & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10326818	3R_10326818_SNP [dm3] 3R_14501096_SNP [dm6]	G	T	3.974e^-4	0.944	INTRON CR44177
3L	2358373	3L_2358373_SNP [dm3] 3L_2358373_SNP [dm6]	T	C	3.976e^-4	0.944	INTERGENIC
2L	3862223	2L_3862223_SNP [dm3] 2L_3862223_SNP [dm6]	A	G	3.980e^-4	0.944	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15345058	3R_15345058_DEL [dm3] 3R_19519336_DEL [dm6]	ACCAAGAC	A	3.982e^-4	0.944	INTRON Dys
3L	13691392	3L_13691392_SNP [dm3] 3L_13698292_SNP [dm6]	C	A	3.984e^-4	0.944	INTRON bru-3
3R	16042466	3R_16042466_SNP [dm3] 3R_20216744_SNP [dm6]	G	T	3.989e^-4	0.944	INTRON Nlg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11514646	3L_11514646_SNP [dm3] 3L_11521546_SNP [dm6]	C	G	3.990e^-4	0.944	SYNONYMOUS_CODING CG11714 UPSTREAM Fuca
2L	10495680	2L_10495680_SNP [dm3] 2L_10495680_SNP [dm6]	T	C	3.993e^-4	0.944	INTRON Myo31DF
2R	14829799	2R_14829799_INS [dm3] 2R_18942294_INS [dm6]	G	GTGTCG	3.997e^-4	0.944	INTRON sano
2L	7627114	2L_7627114_SNP [dm3] 2L_7627114_SNP [dm6]	A	C	4.002e^-4	0.944	INTERGENIC
2L	2723982	2L_2723982_SNP [dm3] 2L_2723982_SNP [dm6]	A	C	4.006e^-4	0.944	INTERGENIC
3R	8557753	3R_8557753_SNP [dm3] 3R_12732031_SNP [dm6]	G	T	4.008e^-4	0.944	INTERGENIC
3L	17355692	3L_17355692_SNP [dm3] 3L_17362592_SNP [dm6]	C	G	4.010e^-4	0.944	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	9557598	3L_9557598_SNP [dm3] 3L_9564498_SNP [dm6]	G	T	4.029e^-4	0.944	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13814744	2R_13814744_SNP [dm3] 2R_17927239_SNP [dm6]	G	A	4.030e^-4	0.944	DOWNSTREAM Elk INTERGENIC
2R	9440448	2R_9440448_DEL [dm3] 2R_13552943_DEL [dm6]	TTACTATGTTT...	T	4.030e^-4	0.944	UPSTREAM CG33156 INTRON CG33156
3R	9815593	3R_9815593_SNP [dm3] 3R_13989871_SNP [dm6]	C	T	4.031e^-4	0.944	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14854502	3L_14854502_SNP [dm3] 3L_14861402_SNP [dm6]	C	T	4.032e^-4	0.944	INTRON CG17839
3L	15057496	3L_15057496_SNP [dm3] 3L_15064396_SNP [dm6]	T	G	4.038e^-4	0.944	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12084742	3L_12084742_SNP [dm3] 3L_12091642_SNP [dm6]	C	G	4.041e^-4	0.944	INTERGENIC
X	10448818	X_10448818_SNP [dm3] X_10554785_SNP [dm6]	A	T	4.044e^-4	0.944	INTRON spri
X	7859871	X_7859871_SNP [dm3] X_7965838_SNP [dm6]	G	T	4.044e^-4	0.944	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	12360274	3R_12360274_SNP [dm3] 3R_16534552_SNP [dm6]	G	A	4.054e^-4	0.944	INTRON CG42342	TF binding site mE1_TFBS_HSA
2L	20862654	2L_20862654_DEL [dm3] 2L_20862654_DEL [dm6]	GCGTT	G	4.064e^-4	0.944	EXON CR9337
3L	2983717	3L_2983717_SNP [dm3] 3L_2983717_SNP [dm6]	A	G	4.066e^-4	0.944	DOWNSTREAM CG2107 INTERGENIC
3L	14239986	3L_14239986_INS [dm3] 3L_14246886_INS [dm6]	T	TGAT	4.074e^-4	0.944	EXON CR44560
3R	16580046	3R_16580046_SNP [dm3] 3R_20754324_SNP [dm6]	T	C	4.075e^-4	0.944	DOWNSTREAM CG42322 INTRON CG42322	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14452558	2L_14452558_SNP [dm3] 2L_14452558_SNP [dm6]	A	C	4.076e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10821914	3L_10821914_SNP [dm3] 3L_10828814_SNP [dm6]	C	T	4.081e^-4	0.944	INTERGENIC
3L	1032042	3L_1032042_SNP [dm3] 3L_1032042_SNP [dm6]	T	A	4.083e^-4	0.944	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11192890	X_11192890_SNP [dm3] X_11298857_SNP [dm6]	A	C	4.086e^-4	0.944	INTRON CG44422
2R	18373453	2R_18373453_SNP [dm3] 2R_22485948_SNP [dm6]	C	T	4.088e^-4	0.944	INTRON CG4554
2R	18317388	2R_18317388_DEL [dm3] 2R_22429883_DEL [dm6]	TTGAAC	T	4.106e^-4	0.944	DOWNSTREAM ppk12 INTERGENIC
3L	13718453	3L_13718453_INS [dm3] 3L_13725353_INS [dm6]	A	AC	4.109e^-4	0.944	INTRON bru-3
3R	27805227	3R_27805227_SNP [dm3] 3R_31979505_SNP [dm6]	G	A	4.112e^-4	0.944	INTRON heph & 1 other
3R	8755229	3R_8755229_SNP [dm3] 3R_12929507_SNP [dm6]	T	C	4.113e^-4	0.944	INTRON beat-Vb
3L	1516093	3L_1516093_SNP [dm3] 3L_1516093_SNP [dm6]	C	T	4.120e^-4	0.944	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	25787280	3R_25787280_SNP [dm3] 3R_29961558_SNP [dm6]	G	A	4.124e^-4	0.944	INTRON TkR99D
3L	18854721	3L_18854721_SNP [dm3] 3L_18861621_SNP [dm6]	C	A	4.125e^-4	0.944	DOWNSTREAM mir-315 INTERGENIC
3R	18972428	3R_18972428_INS [dm3] 3R_23146706_INS [dm6]	G	GGATG	4.131e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9964083	2L_9964083_SNP [dm3] 2L_9964083_SNP [dm6]	T	A	4.133e^-4	0.944	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
3L	16040539	3L_16040539_INS [dm3] 3L_16047439_INS [dm6]	T	TGTAT	4.139e^-4	0.944	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6261488	2L_6261488_SNP [dm3] 2L_6261488_SNP [dm6]	C	A	4.142e^-4	0.944	INTRON Ddr
3R	17208980	3R_17208980_SNP [dm3] 3R_21383258_SNP [dm6]	T	C	4.149e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs
2L	11951487	2L_11951487_SNP [dm3] 2L_11951487_SNP [dm6]	C	T	4.149e^-4	0.944	DOWNSTREAM CR43314 INTERGENIC
2R	19406049	2R_19406049_SNP [dm3] 2R_23518526_SNP [dm6]	G	A	4.194e^-4	0.944	INTERGENIC
3L	12219670	3L_12219670_SNP [dm3] 3L_12226570_SNP [dm6]	G	A	4.195e^-4	0.944	INTRON app
3R	14274789	3R_14274789_SNP [dm3] 3R_18449067_SNP [dm6]	T	C	4.197e^-4	0.944	INTRON fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	7308389	X_7308389_SNP [dm3] X_7414356_SNP [dm6]	T	G	4.200e^-4	0.944	UTR_3_PRIME CG42705 DOWNSTREAM CG42705
3R	21908059	3R_21908059_SNP [dm3] 3R_26082337_SNP [dm6]	T	C	4.201e^-4	0.944	INTRON dys	TF binding site mE1_TFBS_cad
3R	15331276	3R_15331276_SNP [dm3] 3R_19505554_SNP [dm6]	A	T	4.212e^-4	0.944	INTRON Dys
3L	11575824	3L_11575824_DEL [dm3] 3L_11582724_DEL [dm6]	ATCC	A	4.215e^-4	0.944	UPSTREAM CG33269
2R	14826686	2R_14826686_SNP [dm3] 2R_18939181_SNP [dm6]	T	G	4.220e^-4	0.944	INTRON sano
2L	18752523	2L_18752523_SNP [dm3] 2L_18752523_SNP [dm6]	A	G	4.224e^-4	0.944	INTERGENIC
3L	19304080	3L_19304080_SNP [dm3] 3L_19310980_SNP [dm6]	A	G	4.225e^-4	0.944	NON_SYNONYMOUS_CODING pip INTRON pip	TF binding site mE1_TFBS_sens
X	11917685	X_11917685_SNP [dm3] X_12023652_SNP [dm6]	A	T	4.229e^-4	0.944	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
3L	7736749	3L_7736749_DEL [dm3] 3L_7743649_DEL [dm6]	ATATAAAGA	GCACC	4.235e^-4	0.944	UPSTREAM Snmp2 INTRON CG32373
3R	10292153	3R_10292153_SNP [dm3] 3R_14466431_SNP [dm6]	G	T	4.238e^-4	0.944	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	912335	2L_912335_SNP [dm3] 2L_912335_SNP [dm6]	T	A	4.244e^-4	0.944	DOWNSTREAM CR44061 INTERGENIC
2R	12637529	2R_12637529_SNP [dm3] 2R_16750024_SNP [dm6]	T	G	4.245e^-4	0.944	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
3L	17753542	3L_17753542_SNP [dm3] 3L_17760442_SNP [dm6]	C	T	4.248e^-4	0.944	SYNONYMOUS_CODING CG32181 DOWNSTREAM CG32182 INTRON Adgf-A & 1 other
3R	25225319	3R_25225319_SNP [dm3] 3R_29399597_SNP [dm6]	G	C	4.249e^-4	0.944	INTRON Ptp99A
2R	12057200	2R_12057200_SNP [dm3] 2R_16169695_SNP [dm6]	G	A	4.257e^-4	0.944	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk
2L	19833075	2L_19833075_SNP [dm3] 2L_19833075_SNP [dm6]	A	C	4.263e^-4	0.944	INTRON sick
2R	17926849	2R_17926849_SNP [dm3] 2R_22039344_SNP [dm6]	G	A	4.270e^-4	0.944	INTRON CG34370
2L	20389274	2L_20389274_SNP [dm3] 2L_20389274_SNP [dm6]	A	T	4.279e^-4	0.944	INTRON CG10947
2R	12093195	2R_12093195_SNP [dm3] 2R_16205690_SNP [dm6]	C	T	4.282e^-4	0.944	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
X	16896146	X_16896146_SNP [dm3] X_17002113_SNP [dm6]	G	C	4.301e^-4	0.944	INTRON CG45002
2L	16525881	2L_16525881_SNP [dm3] 2L_16525881_SNP [dm6]	G	C	4.324e^-4	0.944	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	14117137	3L_14117137_SNP [dm3] 3L_14124037_SNP [dm6]	G	A	4.326e^-4	0.944	INTRON Sox21b
2R	12639158	2R_12639158_SNP [dm3] 2R_16751653_SNP [dm6]	C	T	4.331e^-4	0.944	UTR_3_PRIME unc-104 UPSTREAM Acp53C14c
3L	10113122	3L_10113122_SNP [dm3] 3L_10120022_SNP [dm6]	T	A	4.336e^-4	0.944	INTRON dpr6
2L	7576517	2L_7576517_SNP [dm3] 2L_7576517_SNP [dm6]	C	T	4.339e^-4	0.944	START_GAINED RapGAP1 UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9558267	3R_9558267_SNP [dm3] 3R_13732545_SNP [dm6]	C	A	4.339e^-4	0.944	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4282441	X_4282441_DEL [dm3] X_4388408_DEL [dm6]	AGTTTAAGTCTA...	A	4.345e^-4	0.944	INTRON CR32773
3L	10886213	3L_10886213_SNP [dm3] 3L_10893113_SNP [dm6]	A	G	4.351e^-4	0.944	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	20929308	X_20929308_SNP [dm3] X_21058281_SNP [dm6]	A	T	4.352e^-4	0.944	INTRON bves
3L	14324956	3L_14324956_SNP [dm3] 3L_14331856_SNP [dm6]	C	T	4.357e^-4	0.944	INTRON fz
3L	17704178	3L_17704178_SNP [dm3] 3L_17711078_SNP [dm6]	G	A	4.361e^-4	0.944	UTR_5_PRIME Ccn	TF binding site BDTNP1_TFBS_twi
X	9006596	X_9006596_SNP [dm3] X_9112563_SNP [dm6]	T	A	4.363e^-4	0.944	INTRON AP-1gamma
3R	18021633	3R_18021633_SNP [dm3] 3R_22195911_SNP [dm6]	C	T	4.367e^-4	0.944	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12258904	X_12258904_SNP [dm3] X_12364871_SNP [dm6]	A	C	4.380e^-4	0.944	INTERGENIC
2L	5456463	2L_5456463_SNP [dm3] 2L_5456463_SNP [dm6]	G	A	4.387e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7200472	3L_7200472_SNP [dm3] 3L_7207372_SNP [dm6]	G	A	4.389e^-4	0.944	INTERGENIC
2R	13340948	2R_13340948_SNP [dm3] 2R_17453443_SNP [dm6]	G	A	4.391e^-4	0.944	NON_SYNONYMOUS_CODING CG10764 UPSTREAM mthl3
3R	16539573	3R_16539573_SNP [dm3] 3R_20713851_SNP [dm6]	A	G	4.391e^-4	0.944	INTRON Oamb	TF binding site BDTNP1_TFBS_dl
3L	10821770	3L_10821770_SNP [dm3] 3L_10828670_SNP [dm6]	A	T	4.393e^-4	0.944	INTERGENIC
2R	17471460	2R_17471460_SNP [dm3] 2R_21583955_SNP [dm6]	C	T	4.403e^-4	0.944	SYNONYMOUS_CODING CG30222
X	11308485	X_11308485_SNP [dm3] X_11414452_SNP [dm6]	A	T	4.405e^-4	0.944	INTRON Gr10a	TF binding site BDTNP1_TFBS_da
3R	17676788	3R_17676788_SNP [dm3] 3R_21851066_SNP [dm6]	G	A	4.407e^-4	0.944	UTR_3_PRIME glec
X	15667705	X_15667705_SNP [dm3] X_15773672_SNP [dm6]	G	A	4.429e^-4	0.944	NON_SYNONYMOUS_CODING CG43672 DOWNSTREAM CG33172	TF binding site mE1_TFBS_sens
X	889517	X_889517_SNP [dm3] X_995484_SNP [dm6]	A	G	4.430e^-4	0.944	INTERGENIC
2R	1390884	2R_1390884_SNP [dm3] 2R_5503379_SNP [dm6]	G	A	4.432e^-4	0.944	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	15332717	3R_15332717_SNP [dm3] 3R_19506995_SNP [dm6]	G	A	4.434e^-4	0.944	SPLICE_SITE_REGION Dys INTRON Dys
2R	20489178	2R_20489178_SNP [dm3] 2R_24601655_SNP [dm6]	G	A	4.437e^-4	0.944	UTR_3_PRIME CG3548 UPSTREAM CG3565	TF binding site mE1_TFBS_chinmo
2R	6073753	2R_6073753_SNP [dm3] 2R_10186248_SNP [dm6]	C	T	4.439e^-4	0.944	INTRON KCNQ
3R	14259509	3R_14259509_SNP [dm3] 3R_18433787_SNP [dm6]	T	A	4.440e^-4	0.944	INTRON fru
3R	4801478	3R_4801478_SNP [dm3] 3R_8975756_SNP [dm6]	G	A	4.443e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6724553	3R_6724553_INS [dm3] 3R_10898831_INS [dm6]	A	ACCTTTGTTAGTA...	4.446e^-4	0.944	UPSTREAM CR45578 INTERGENIC
2R	14901339	2R_14901339_SNP [dm3] 2R_19013834_SNP [dm6]	A	G	4.446e^-4	0.944	INTERGENIC
2L	11908118	2L_11908118_SNP [dm3] 2L_11908118_SNP [dm6]	A	G	4.452e^-4	0.944	INTRON Pde1c
2L	11908120	2L_11908120_SNP [dm3] 2L_11908120_SNP [dm6]	A	T	4.452e^-4	0.944	INTRON Pde1c
3L	14400954	3L_14400954_SNP [dm3] 3L_14407854_SNP [dm6]	T	A	4.453e^-4	0.944	INTRON stwl
3R	14117695	3R_14117695_SNP [dm3] 3R_18291973_SNP [dm6]	A	C	4.471e^-4	0.944	UPSTREAM l_3_05822 INTRON l_3_05822
3L	5274047	3L_5274047_SNP [dm3] 3L_5280947_SNP [dm6]	G	T	4.472e^-4	0.944	INTERGENIC
2R	13683939	2R_13683939_SNP [dm3] 2R_17796434_SNP [dm6]	A	C	4.475e^-4	0.944	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2796690	2L_2796690_SNP [dm3] 2L_2796690_SNP [dm6]	T	A	4.485e^-4	0.944	INTRON Syt1
3R	20219766	3R_20219766_DEL [dm3] 3R_24394044_DEL [dm6]	GT	G	4.490e^-4	0.944	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
2R	19297375	2R_19297375_SNP [dm3] 2R_23409852_SNP [dm6]	T	A	4.497e^-4	0.944	INTERGENIC
3L	18851408	3L_18851408_SNP [dm3] 3L_18858308_SNP [dm6]	A	G	4.498e^-4	0.944	DOWNSTREAM CR45388 INTERGENIC
3L	8468156	3L_8468156_SNP [dm3] 3L_8475056_SNP [dm6]	G	A	4.499e^-4	0.944	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23648973	3R_23648973_SNP [dm3] 3R_27823251_SNP [dm6]	G	C	4.513e^-4	0.944	INTRON CG34353
X	2947538	X_2947538_SNP [dm3] X_3053505_SNP [dm6]	A	C	4.515e^-4	0.944	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7977706	3L_7977706_SNP [dm3] 3L_7984606_SNP [dm6]	T	C	4.516e^-4	0.944	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12597197	3L_12597197_SNP [dm3] 3L_12604097_SNP [dm6]	A	G	4.520e^-4	0.944	INTERGENIC
3R	23419037	3R_23419037_SNP [dm3] 3R_27593315_SNP [dm6]	G	T	4.529e^-4	0.944	INTRON CG5639
2R	20520531	2R_20520531_SNP [dm3] 2R_24633008_SNP [dm6]	G	C	4.533e^-4	0.944	UPSTREAM CR43787 DOWNSTREAM Cyp9c1 INTRON CG13594
2L	18099929	2L_18099929_SNP [dm3] 2L_18099929_SNP [dm6]	T	C	4.533e^-4	0.944	INTERGENIC
2R	20591017	2R_20591017_SNP [dm3] 2R_24703494_SNP [dm6]	C	T	4.534e^-4	0.944	INTRON Mid1
2R	20606032	2R_20606032_DEL [dm3] 2R_24718509_DEL [dm6]	TATTCAGAACTTTTGCCGAG...	T	4.534e^-4	0.944	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19833083	2L_19833083_SNP [dm3] 2L_19833083_SNP [dm6]	T	C	4.543e^-4	0.944	INTRON sick
X	19668305	X_19668305_DEL [dm3] X_19774272_DEL [dm6]	GAAACCAAG	G	4.543e^-4	0.944	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16526884	2L_16526884_SNP [dm3] 2L_16526884_SNP [dm6]	T	C	4.547e^-4	0.944	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	13690637	3L_13690637_DEL [dm3] 3L_13697537_DEL [dm6]	AT	A	4.549e^-4	0.944	INTRON bru-3
2L	3762601	2L_3762601_SNP [dm3] 2L_3762601_SNP [dm6]	A	T	4.552e^-4	0.944	INTRON CG43707	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7308261	X_7308261_INS [dm3] X_7414228_INS [dm6]	T	TCCTTATTTT	4.565e^-4	0.944	UTR_3_PRIME CG42705 DOWNSTREAM CG42704
2L	5390050	2L_5390050_SNP [dm3] 2L_5390050_SNP [dm6]	G	A	4.567e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6953773	2L_6953773_SNP [dm3] 2L_6953773_SNP [dm6]	C	T	4.567e^-4	0.944	DOWNSTREAM CG13775 INTRON SA
2R	17019507	2R_17019507_SNP [dm3] 2R_21132002_SNP [dm6]	G	A	4.569e^-4	0.944	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25675105	3R_25675105_SNP [dm3] 3R_29849383_SNP [dm6]	C	G	4.569e^-4	0.944	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
X	19091570	X_19091570_DEL [dm3] X_19197537_DEL [dm6]	TT	T	4.571e^-4	0.944	UTR_3_PRIME CG7990
3R	16808299	3R_16808299_DEL [dm3] 3R_20982577_DEL [dm6]	GG	G	4.573e^-4	0.944	INTRON Calx
2R	9910040	2R_9910040_SNP [dm3] 2R_14022535_SNP [dm6]	A	T	4.579e^-4	0.944	INTRON mam
2L	14840315	2L_14840315_SNP [dm3] 2L_14840315_SNP [dm6]	C	T	4.582e^-4	0.944	DOWNSTREAM CR43805 INTERGENIC
3R	19083032	3R_19083032_SNP [dm3] 3R_23257310_SNP [dm6]	T	C	4.585e^-4	0.944	SYNONYMOUS_CODING wda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12675769	2R_12675769_SNP [dm3] 2R_16788264_SNP [dm6]	G	A	4.607e^-4	0.944	SPLICE_SITE_REGION CG5522 INTRON CG5522
2R	17002535	2R_17002535_SNP [dm3] 2R_21115030_SNP [dm6]	C	G	4.608e^-4	0.944	INTRON ktub
3L	13354320	3L_13354320_SNP [dm3] 3L_13361220_SNP [dm6]	C	A	4.609e^-4	0.944	INTERGENIC
3L	1517923	3L_1517923_SNP [dm3] 3L_1517923_SNP [dm6]	C	T	4.613e^-4	0.944	UTR_5_PRIME Psa UPSTREAM cue INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17725653	3R_17725653_SNP [dm3] 3R_21899931_SNP [dm6]	A	G	4.618e^-4	0.944	INTRON CG6678
3R	8987499	3R_8987499_SNP [dm3] 3R_13161777_SNP [dm6]	G	C	4.620e^-4	0.944	INTRON timeout
3L	5591827	3L_5591827_SNP [dm3] 3L_5598727_SNP [dm6]	G	A	4.624e^-4	0.944	SYNONYMOUS_CODING CG10591
2R	17542439	2R_17542439_SNP [dm3] 2R_21654934_SNP [dm6]	C	T	4.626e^-4	0.944	INTRON CG10082	TF binding site mE1_TFBS_cad
3R	18572357	3R_18572357_SNP [dm3] 3R_22746635_SNP [dm6]	G	A	4.634e^-4	0.944	SYNONYMOUS_CODING CG17141 DOWNSTREAM HP1c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13691297	3L_13691297_SNP [dm3] 3L_13698197_SNP [dm6]	A	G	4.635e^-4	0.944	INTRON bru-3
3L	15157255	3L_15157255_SNP [dm3] 3L_15164155_SNP [dm6]	C	T	4.641e^-4	0.944	UPSTREAM CG7011 INTERGENIC
3L	14214488	3L_14214488_DEL [dm3] 3L_14221388_DEL [dm6]	TCT	T	4.645e^-4	0.944	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15328671	3R_15328671_SNP [dm3] 3R_19502949_SNP [dm6]	C	T	4.647e^-4	0.944	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3L	19335172	3L_19335172_SNP [dm3] 3L_19342072_SNP [dm6]	C	T	4.667e^-4	0.944	UTR_3_PRIME CG32206
2L	15992726	2L_15992726_SNP [dm3] 2L_15992726_SNP [dm6]	A	G	4.673e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9913951	2R_9913951_SNP [dm3] 2R_14026446_SNP [dm6]	T	A	4.675e^-4	0.944	INTRON mam
3R	17001438	3R_17001438_SNP [dm3] 3R_21175716_SNP [dm6]	A	G	4.676e^-4	0.944	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
3L	11661895	3L_11661895_SNP [dm3] 3L_11668795_SNP [dm6]	A	T	4.679e^-4	0.944	INTRON CG32085
X	21866455	X_21866455_SNP [dm3] X_22464619_SNP [dm6]	T	C	4.683e^-4	0.944	SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	8463648	3L_8463648_SNP [dm3] 3L_8470548_SNP [dm6]	C	G	4.693e^-4	0.944	INTRON Gug
3R	3598022	3R_3598022_SNP [dm3] 3R_7772300_SNP [dm6]	T	C	4.694e^-4	0.944	UPSTREAM CG11286 INTERGENIC
2R	13221794	2R_13221794_INS [dm3] 2R_17334289_INS [dm6]	A	AA	4.697e^-4	0.944	INTRON mbl
2R	10442016	2R_10442016_SNP [dm3] 2R_14554511_SNP [dm6]	T	G	4.699e^-4	0.944	UPSTREAM CG43919 INTRON ttv
3L	13542437	3L_13542437_SNP [dm3] 3L_13549337_SNP [dm6]	T	G	4.699e^-4	0.944	INTRON bru-3
3L	13470026	3L_13470026_SNP [dm3] 3L_13476926_SNP [dm6]	A	T	4.701e^-4	0.944	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9954404	2R_9954404_SNP [dm3] 2R_14066899_SNP [dm6]	A	G	4.707e^-4	0.944	INTRON Prosap
X	21093204	X_21093204_SNP [dm3] X_21222177_SNP [dm6]	C	A	4.714e^-4	0.944	INTRON CG32521
2L	3762574	2L_3762574_DEL [dm3] 2L_3762574_DEL [dm6]	TGAC	A	4.715e^-4	0.944	INTRON CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17725874	3R_17725874_SNP [dm3] 3R_21900152_SNP [dm6]	G	C	4.717e^-4	0.944	INTRON CG6678
3L	8466275	3L_8466275_SNP [dm3] 3L_8473175_SNP [dm6]	C	T	4.719e^-4	0.944	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad
X	15499413	X_15499413_SNP [dm3] X_15605380_SNP [dm6]	G	A	4.720e^-4	0.944	INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23445989	3L_23445989_SNP [dm3] 3L_23452889_SNP [dm6]	A	C	4.729e^-4	0.944	INTERGENIC
2L	5666691	2L_5666691_SNP [dm3] 2L_5666691_SNP [dm6]	T	C	4.733e^-4	0.944	INTRON Hsp60C
3L	1561369	3L_1561369_DEL [dm3] 3L_1561369_DEL [dm6]	TGCT	T	4.738e^-4	0.944	CODON_DELETION CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21922645	3R_21922645_SNP [dm3] 3R_26096923_SNP [dm6]	G	A	4.762e^-4	0.944	INTRON dys	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2L	16435879	2L_16435879_SNP [dm3] 2L_16435879_SNP [dm6]	C	T	4.765e^-4	0.944	INTRON CG5888
3R	23727615	3R_23727615_SNP [dm3] 3R_27901893_SNP [dm6]	A	C	4.777e^-4	0.944	INTRON CG34353
3R	17725776	3R_17725776_SNP [dm3] 3R_21900054_SNP [dm6]	T	C	4.781e^-4	0.944	INTRON CG6678
X	16401519	X_16401519_SNP [dm3] X_16507486_SNP [dm6]	C	A	4.789e^-4	0.944	INTRON para
3R	13397812	3R_13397812_SNP [dm3] 3R_17572090_SNP [dm6]	G	A	4.793e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	14592349	3R_14592349_SNP [dm3] 3R_18766627_SNP [dm6]	G	C	4.795e^-4	0.944	INTRON CG7720
3R	14592356	3R_14592356_SNP [dm3] 3R_18766634_SNP [dm6]	G	T	4.795e^-4	0.944	INTRON CG7720
2L	7690370	2L_7690370_SNP [dm3] 2L_7690370_SNP [dm6]	G	T	4.797e^-4	0.944	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1 & 1 other
3L	4013744	3L_4013744_SNP [dm3] 3L_4013744_SNP [dm6]	T	G	4.799e^-4	0.944	INTERGENIC
2R	9943601	2R_9943601_SNP [dm3] 2R_14056096_SNP [dm6]	T	A	4.805e^-4	0.944	INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19133238	2R_19133238_SNP [dm3] 2R_23245715_SNP [dm6]	G	A	4.812e^-4	0.944	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
2R	9494213	2R_9494213_SNP [dm3] 2R_13606708_SNP [dm6]	T	C	4.818e^-4	0.944	INTERGENIC
3R	4862102	3R_4862102_SNP [dm3] 3R_9036380_SNP [dm6]	G	A	4.820e^-4	0.944	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9039212	3R_9039212_SNP [dm3] 3R_13213490_SNP [dm6]	C	A	4.821e^-4	0.944	INTRON CG8483
3R	19448491	3R_19448491_SNP [dm3] 3R_23622769_SNP [dm6]	T	A	4.822e^-4	0.944	INTRON CG31145	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20827205	3R_20827205_SNP [dm3] 3R_25001483_SNP [dm6]	A	G	4.825e^-4	0.944	SYNONYMOUS_CODING tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4347360	X_4347360_SNP [dm3] X_4453327_SNP [dm6]	A	G	4.827e^-4	0.944	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26391634	3R_26391634_SNP [dm3] 3R_30565912_SNP [dm6]	G	A	4.842e^-4	0.944	INTRON tmod
3L	7311490	3L_7311490_SNP [dm3] 3L_7318390_SNP [dm6]	A	C	4.851e^-4	0.944	INTERGENIC
X	3661082	X_3661082_SNP [dm3] X_3767049_SNP [dm6]	C	G	4.863e^-4	0.944	INTRON tlk
3L	4086368	3L_4086368_SNP [dm3] 3L_4086368_SNP [dm6]	A	G	4.872e^-4	0.944	UPSTREAM Gad1 INTRON Gad1
3R	25460197	3R_25460197_SNP [dm3] 3R_29634475_SNP [dm6]	T	A	4.877e^-4	0.944	INTRON Dop1R2
3R	10293408	3R_10293408_SNP [dm3] 3R_14467686_SNP [dm6]	G	C	4.878e^-4	0.944	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17678315	2R_17678315_SNP [dm3] 2R_21790810_SNP [dm6]	T	A	4.885e^-4	0.944	SYNONYMOUS_CODING lox2
2R	19370754	2R_19370754_SNP [dm3] 2R_23483231_SNP [dm6]	C	T	4.885e^-4	0.944	INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	15855800	3R_15855800_SNP [dm3] 3R_20030078_SNP [dm6]	G	A	4.885e^-4	0.944	SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9850590	3L_9850590_SNP [dm3] 3L_9857490_SNP [dm6]	T	G	4.889e^-4	0.944	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18956820	3R_18956820_INS [dm3] 3R_23131098_INS [dm6]	A	AGCAACAACA	4.890e^-4	0.944	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14452482	2L_14452482_SNP [dm3] 2L_14452482_SNP [dm6]	G	A	4.897e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	273021	4_273021_SNP [dm3] 4_252395_SNP [dm6]	G	C	4.898e^-4	0.944	INTRON dpr7
2L	1710429	2L_1710429_SNP [dm3] 2L_1710429_SNP [dm6]	T	G	4.901e^-4	0.944	UPSTREAM mRpL48 & 1 other DOWNSTREAM frtz INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17512408	2R_17512408_SNP [dm3] 2R_21624903_SNP [dm6]	A	C	4.906e^-4	0.944	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12115365	2L_12115365_SNP [dm3] 2L_12115365_SNP [dm6]	T	G	4.909e^-4	0.944	INTRON CG17211
2R	8498770	2R_8498770_SNP [dm3] 2R_12611265_SNP [dm6]	T	C	4.923e^-4	0.944	UTR_3_PRIME Amph
2R	1735860	2R_1735860_SNP [dm3] 2R_5848355_SNP [dm6]	G	A	4.932e^-4	0.944	INTRON dpr12
3L	5465770	3L_5465770_SNP [dm3] 3L_5472670_SNP [dm6]	G	A	4.935e^-4	0.944	INTERGENIC
2R	16333687	2R_16333687_SNP [dm3] 2R_20446182_SNP [dm6]	G	A	4.936e^-4	0.944	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	8573222	2L_8573222_SNP [dm3] 2L_8573222_SNP [dm6]	C	T	4.939e^-4	0.944	INTRON Sema-1a
2R	9929397	2R_9929397_SNP [dm3] 2R_14041892_SNP [dm6]	A	G	4.940e^-4	0.944	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	9773426	X_9773426_SNP [dm3] X_9879393_SNP [dm6]	C	T	4.943e^-4	0.944	UPSTREAM CG9686 DOWNSTREAM CG1468 INTERGENIC
3R	21920407	3R_21920407_SNP [dm3] 3R_26094685_SNP [dm6]	C	A	4.960e^-4	0.944	UPSTREAM CR44319 INTRON dys	regulatory region REDfly_CRMs
2R	12441049	2R_12441049_SNP [dm3] 2R_16553544_SNP [dm6]	A	G	4.960e^-4	0.944	INTRON Syn2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5704454	3L_5704454_SNP [dm3] 3L_5711354_SNP [dm6]	T	C	4.961e^-4	0.944	INTRON sif
3R	16575865	3R_16575865_SNP [dm3] 3R_20750143_SNP [dm6]	T	G	4.973e^-4	0.944	INTRON CG42322
2L	11934259	2L_11934259_SNP [dm3] 2L_11934259_SNP [dm6]	T	A	4.975e^-4	0.944	UPSTREAM Or33a INTERGENIC
3R	15329725	3R_15329725_SNP [dm3] 3R_19504003_SNP [dm6]	G	A	4.978e^-4	0.944	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	14829497	2R_14829497_SNP [dm3] 2R_18941992_SNP [dm6]	C	T	4.984e^-4	0.944	INTRON sano
3L	14097813	3L_14097813_SNP [dm3] 3L_14104713_SNP [dm6]	A	C	4.988e^-4	0.944	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1603354	2L_1603354_SNP [dm3] 2L_1603354_SNP [dm6]	G	A	4.996e^-4	0.944	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7949546	3L_7949546_SNP [dm3] 3L_7956446_SNP [dm6]	T	G	4.996e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8911051	3L_8911051_SNP [dm3] 3L_8917951_SNP [dm6]	C	T	5.011e^-4	0.944	INTRON Tsp66E
3R	6465109	3R_6465109_SNP [dm3] 3R_10639387_SNP [dm6]	A	C	5.019e^-4	0.944	UTR_5_PRIME hth EXON CR44018	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	6937092	2L_6937092_SNP [dm3] 2L_6937092_SNP [dm6]	C	T	5.020e^-4	0.944	INTRON CG18304
3R	9145428	3R_9145428_INS [dm3] 3R_13319706_INS [dm6]	T	TCGTGGTCTGGGTT...	5.031e^-4	0.944	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12115287	2L_12115287_SNP [dm3] 2L_12115287_SNP [dm6]	A	C	5.037e^-4	0.944	INTRON CG17211
2R	10713032	2R_10713032_SNP [dm3] 2R_14825527_SNP [dm6]	T	C	5.038e^-4	0.944	INTERGENIC
2R	2876612	2R_2876612_SNP [dm3] 2R_6989107_SNP [dm6]	A	T	5.047e^-4	0.944	DOWNSTREAM CG17002 INTERGENIC
3R	14592355	3R_14592355_SNP [dm3] 3R_18766633_SNP [dm6]	G	A	5.053e^-4	0.944	INTRON CG7720
3R	15435481	3R_15435481_SNP [dm3] 3R_19609759_SNP [dm6]	T	C	5.059e^-4	0.944	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
2R	7269316	2R_7269316_SNP [dm3] 2R_11381811_SNP [dm6]	G	A	5.061e^-4	0.944	SYNONYMOUS_CODING Sod3
2R	17547682	2R_17547682_DEL [dm3] 2R_21660177_DEL [dm6]	GATTTACAAGTATGCAACAT...	G	5.061e^-4	0.944	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14705868	2R_14705868_SNP [dm3] 2R_18818363_SNP [dm6]	A	G	5.076e^-4	0.944	INTERGENIC
2L	2512103	2L_2512103_SNP [dm3] 2L_2512103_SNP [dm6]	C	T	5.077e^-4	0.944	INTERGENIC
X	8520580	X_8520580_SNP [dm3] X_8626547_SNP [dm6]	C	G	5.091e^-4	0.944	INTERGENIC
2L	20862623	2L_20862623_SNP [dm3] 2L_20862623_SNP [dm6]	G	T	5.099e^-4	0.944	EXON CR9337
3L	16822094	3L_16822094_SNP [dm3] 3L_16828994_SNP [dm6]	A	C	5.108e^-4	0.944	UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4167733	3L_4167733_INS [dm3] 3L_4167733_INS [dm6]	T	TC	5.108e^-4	0.944	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	12193333	2R_12193333_SNP [dm3] 2R_16305828_SNP [dm6]	C	T	5.113e^-4	0.944	EXON CR45232
3R	14551505	3R_14551505_SNP [dm3] 3R_18725783_SNP [dm6]	G	A	5.120e^-4	0.944	NON_SYNONYMOUS_CODING CG7714 INTRON Cha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9056176	3R_9056176_SNP [dm3] 3R_13230454_SNP [dm6]	A	T	5.126e^-4	0.944	INTRON Ace
X	11087194	X_11087194_SNP [dm3] X_11193161_SNP [dm6]	A	G	5.129e^-4	0.944	EXON CR44765
2R	17512007	2R_17512007_SNP [dm3] 2R_21624502_SNP [dm6]	A	T	5.131e^-4	0.944	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17513352	2R_17513352_SNP [dm3] 2R_21625847_SNP [dm6]	C	G	5.131e^-4	0.944	INTRON mahj	TF binding site mE1_TFBS_sens
2L	14452476	2L_14452476_SNP [dm3] 2L_14452476_SNP [dm6]	C	A	5.134e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19428817	3L_19428817_SNP [dm3] 3L_19435717_SNP [dm6]	C	T	5.160e^-4	0.944	INTERGENIC
2L	8803954	2L_8803954_SNP [dm3] 2L_8803954_SNP [dm6]	A	C	5.161e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Circadian_Per_ChiSq phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results