DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.287e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	7.2033	0.0273

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2239 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1582522	3L_1582522_INS [dm3] 3L_1582522_INS [dm6]	T	TATTCTCGATCT...	3.356e^-7	0.629	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20104928	2R_20104928_SNP [dm3] 2R_24217405_SNP [dm6]	T	A	2.187e^-6	0.71	INTRON CG30419
2R	12197239	2R_12197239_SNP [dm3] 2R_16309734_SNP [dm6]	C	A	2.396e^-6	0.71	SYNONYMOUS_CODING Nox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	13143609	3L_13143609_SNP [dm3] 3L_13150509_SNP [dm6]	T	C	2.553e^-6	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27068260	3R_27068260_SNP [dm3] 3R_31242538_SNP [dm6]	A	C	3.141e^-6	0.71	INTRON qless
3L	13429237	3L_13429237_SNP [dm3] 3L_13436137_SNP [dm6]	A	G	3.198e^-6	0.71	UPSTREAM CG10713 INTRON CG10154
3L	23099801	3L_23099801_SNP [dm3] 3L_23106701_SNP [dm6]	T	C	3.324e^-6	0.71	INTERGENIC	transposable element FlyBase
3L	1213732	3L_1213732_SNP [dm3] 3L_1213732_SNP [dm6]	C	T	3.580e^-6	0.71	DOWNSTREAM LysE INTRON mwh
3R	16522211	3R_16522211_SNP [dm3] 3R_20696489_SNP [dm6]	T	A	4.004e^-6	0.71	INTRON Oamb
2R	20104951	2R_20104951_SNP [dm3] 2R_24217428_SNP [dm6]	T	G	4.105e^-6	0.71	INTRON CG30419
3L	17384976	3L_17384976_SNP [dm3] 3L_17391876_SNP [dm6]	C	T	4.640e^-6	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19616496	2R_19616496_SNP [dm3] 2R_23728973_SNP [dm6]	T	C	5.032e^-6	0.71	INTRON Sesn
2R	20104911	2R_20104911_SNP [dm3] 2R_24217388_SNP [dm6]	A	T	5.614e^-6	0.71	INTRON CG30419
3R	25927536	3R_25927536_SNP [dm3] 3R_30101814_SNP [dm6]	A	C	5.797e^-6	0.71	INTRON sima
2R	18733175	2R_18733175_SNP [dm3] 2R_22845652_SNP [dm6]	A	G	6.543e^-6	0.71	UPSTREAM CG3649 INTERGENIC
2R	17097733	2R_17097733_SNP [dm3] 2R_21210228_SNP [dm6]	G	A	7.747e^-6	0.71	NON_SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	11064705	2L_11064705_SNP [dm3] 2L_11064705_SNP [dm6]	A	G	7.749e^-6	0.71	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10722606	2L_10722606_SNP [dm3] 2L_10722606_SNP [dm6]	T	A	7.759e^-6	0.71	INTERGENIC
3R	25339792	3R_25339792_SNP [dm3] 3R_29514070_SNP [dm6]	G	A	7.824e^-6	0.71	INTERGENIC
X	15897010	X_15897010_SNP [dm3] X_16002977_SNP [dm6]	G	A	8.866e^-6	0.71	SYNONYMOUS_CODING vap
3L	2122361	3L_2122361_SNP [dm3] 3L_2122361_SNP [dm6]	G	C	8.983e^-6	0.71	DOWNSTREAM zormin INTRON zormin
2L	10722605	2L_10722605_SNP [dm3] 2L_10722605_SNP [dm6]	A	T	9.294e^-6	0.71	INTERGENIC
X	2181049	X_2181049_SNP [dm3] X_2287016_SNP [dm6]	G	A	1.004e^-5	0.71	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	3620737	2R_3620737_DEL [dm3] 2R_7733232_DEL [dm6]	ATTAA	A	1.038e^-5	0.71	INTRON CG18812
2L	4197721	2L_4197721_SNP [dm3] 2L_4197721_SNP [dm6]	T	G	1.062e^-5	0.71	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	11064750	2L_11064750_SNP [dm3] 2L_11064750_SNP [dm6]	G	A	1.068e^-5	0.71	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15804960	2L_15804960_SNP [dm3] 2L_15804960_SNP [dm6]	T	C	1.109e^-5	0.71	INTERGENIC
3R	1455187	3R_1455187_SNP [dm3] 3R_5629465_SNP [dm6]	A	C	1.174e^-5	0.71	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6693733	2R_6693733_SNP [dm3] 2R_10806228_SNP [dm6]	G	A	1.180e^-5	0.71	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18571401	2R_18571401_SNP [dm3] 2R_22683896_SNP [dm6]	G	T	1.186e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	2198157	3L_2198157_SNP [dm3] 3L_2198157_SNP [dm6]	A	C	1.195e^-5	0.71	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2181053	X_2181053_SNP [dm3] X_2287020_SNP [dm6]	A	G	1.311e^-5	0.71	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	1.313e^-5	0.71	INTRON Oamb
3R	18421502	3R_18421502_SNP [dm3] 3R_22595780_SNP [dm6]	T	C	1.321e^-5	0.71	INTRON Efa6
3R	19491075	3R_19491075_SNP [dm3] 3R_23665353_SNP [dm6]	G	C	1.325e^-5	0.71	INTRON CG31145
3L	6099799	3L_6099799_SNP [dm3] 3L_6106699_SNP [dm6]	C	T	1.441e^-5	0.726	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	11064777	2L_11064777_SNP [dm3] 2L_11064777_SNP [dm6]	G	A	1.462e^-5	0.726	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18733143	2R_18733143_SNP [dm3] 2R_22845620_SNP [dm6]	G	A	1.480e^-5	0.726	UPSTREAM CG3649 INTERGENIC
2L	10722537	2L_10722537_SNP [dm3] 2L_10722537_SNP [dm6]	G	C	1.521e^-5	0.726	INTERGENIC
3R	14279635	3R_14279635_SNP [dm3] 3R_18453913_SNP [dm6]	C	T	1.642e^-5	0.726	INTRON fru
X	8529468	X_8529468_INS [dm3] X_8635435_INS [dm6]	G	GCCTG	1.684e^-5	0.726	INTRON oc	TF binding site BDTNP1_TFBS_dl
3R	24234829	3R_24234829_SNP [dm3] 3R_28409107_SNP [dm6]	T	C	1.722e^-5	0.726	INTERGENIC
3L	17384904	3L_17384904_SNP [dm3] 3L_17391804_SNP [dm6]	T	A	1.762e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
2L	3660691	2L_3660691_SNP [dm3] 2L_3660691_SNP [dm6]	T	G	1.773e^-5	0.726	INTERGENIC
3L	17384887	3L_17384887_DEL [dm3] 3L_17391787_DEL [dm6]	ATGTA	A	1.895e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
3R	15957464	3R_15957464_SNP [dm3] 3R_20131742_SNP [dm6]	A	T	1.978e^-5	0.726	INTERGENIC
2L	10722534	2L_10722534_SNP [dm3] 2L_10722534_SNP [dm6]	A	T	2.014e^-5	0.726	INTERGENIC
2L	10722546	2L_10722546_SNP [dm3] 2L_10722546_SNP [dm6]	C	A	2.014e^-5	0.726	INTERGENIC
2L	10722557	2L_10722557_SNP [dm3] 2L_10722557_SNP [dm6]	A	T	2.014e^-5	0.726	INTERGENIC
2L	9098239	2L_9098239_SNP [dm3] 2L_9098239_SNP [dm6]	A	C	2.037e^-5	0.726	DOWNSTREAM CG31609 INTERGENIC
3R	16492915	3R_16492915_SNP [dm3] 3R_20667193_SNP [dm6]	G	A	2.096e^-5	0.726	INTERGENIC
2R	18732933	2R_18732933_SNP [dm3] 2R_22845410_SNP [dm6]	A	G	2.156e^-5	0.726	UPSTREAM CG3649 INTERGENIC
3L	13429313	3L_13429313_SNP [dm3] 3L_13436213_SNP [dm6]	C	T	2.260e^-5	0.726	SPLICE_SITE_REGION CG10154 UPSTREAM CG10713 INTRON CG10154
3R	25927540	3R_25927540_SNP [dm3] 3R_30101818_SNP [dm6]	C	A	2.335e^-5	0.726	INTRON sima
3L	15701717	3L_15701717_SNP [dm3] 3L_15708617_SNP [dm6]	A	G	2.372e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12322466	2R_12322466_SNP [dm3] 2R_16434961_SNP [dm6]	G	A	2.382e^-5	0.726	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11718581	3R_11718581_SNP [dm3] 3R_15892859_SNP [dm6]	A	G	2.383e^-5	0.726	INTRON CG14877
3R	14719851	3R_14719851_SNP [dm3] 3R_18894129_SNP [dm6]	T	C	2.393e^-5	0.726	INTERGENIC
3L	23139005	3L_23139005_SNP [dm3] 3L_23145905_SNP [dm6]	C	A	2.445e^-5	0.726	INTERGENIC
3R	16492916	3R_16492916_SNP [dm3] 3R_20667194_SNP [dm6]	C	T	2.473e^-5	0.726	INTERGENIC
3R	1450109	3R_1450109_SNP [dm3] 3R_5624387_SNP [dm6]	G	A	2.532e^-5	0.726	UPSTREAM RpL13A & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	1539857	X_1539857_SNP [dm3] X_1645824_SNP [dm6]	A	T	2.537e^-5	0.726	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14828801	2R_14828801_SNP [dm3] 2R_18941296_SNP [dm6]	T	C	2.578e^-5	0.726	INTRON sano
3R	1452737	3R_1452737_SNP [dm3] 3R_5627015_SNP [dm6]	C	A	2.662e^-5	0.726	UPSTREAM CG31551 INTERGENIC
3R	27068247	3R_27068247_SNP [dm3] 3R_31242525_SNP [dm6]	A	C	2.675e^-5	0.726	INTRON qless
3L	1592669	3L_1592669_SNP [dm3] 3L_1592669_SNP [dm6]	T	C	2.803e^-5	0.726	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11265791	3L_11265791_SNP [dm3] 3L_11272691_SNP [dm6]	G	A	2.884e^-5	0.726	INTERGENIC
X	6093808	X_6093808_SNP [dm3] X_6199775_SNP [dm6]	C	T	2.923e^-5	0.726	DOWNSTREAM vanin-like INTRON CG43090
2L	3760045	2L_3760045_SNP [dm3] 2L_3760045_SNP [dm6]	C	T	2.985e^-5	0.726	UTR_5_PRIME CG43707 INTRON CG43707
3R	11710135	3R_11710135_SNP [dm3] 3R_15884413_SNP [dm6]	T	G	3.019e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18664391	2R_18664391_DEL [dm3] 2R_22776886_DEL [dm6]	GTGTTGCAG	G	3.040e^-5	0.726	INTRON CG42260
3R	15957455	3R_15957455_SNP [dm3] 3R_20131733_SNP [dm6]	A	T	3.062e^-5	0.726	INTERGENIC
3R	12679491	3R_12679491_SNP [dm3] 3R_16853769_SNP [dm6]	A	C	3.096e^-5	0.726	INTRON iab-8 & 1 other EXON iab-4
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	3.164e^-5	0.726	INTRON Oamb
3L	23093821	3L_23093821_DEL [dm3] 3L_23100721_DEL [dm6]	CGTATCGAG	T	3.193e^-5	0.726	UPSTREAM CkIIalpha INTRON CkIIalpha
3L	17384873	3L_17384873_SNP [dm3] 3L_17391773_SNP [dm6]	T	C	3.288e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
X	15896804	X_15896804_SNP [dm3] X_16002771_SNP [dm6]	A	G	3.301e^-5	0.726	INTRON vap
2R	14997111	2R_14997111_SNP [dm3] 2R_19109606_SNP [dm6]	C	T	3.447e^-5	0.726	INTRON 5-HT1A
2R	10090150	2R_10090150_SNP [dm3] 2R_14202645_SNP [dm6]	T	C	3.490e^-5	0.726	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3434513	X_3434513_SNP [dm3] X_3540480_SNP [dm6]	G	A	3.527e^-5	0.726	INTRON CG32791
3L	23140474	3L_23140474_SNP [dm3] 3L_23147374_SNP [dm6]	C	G	3.569e^-5	0.726	DOWNSTREAM CG32350 INTERGENIC	transposable element FlyBase
3L	2122369	3L_2122369_SNP [dm3] 3L_2122369_SNP [dm6]	T	G	3.582e^-5	0.726	DOWNSTREAM zormin INTRON zormin
X	18414759	X_18414759_SNP [dm3] X_18520726_SNP [dm6]	C	A	3.607e^-5	0.726	UTR_5_PRIME Bx DOWNSTREAM CG6481 & 1 other
3R	11710095	3R_11710095_SNP [dm3] 3R_15884373_SNP [dm6]	G	C	3.617e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8730125	2R_8730125_INS [dm3] 2R_12842620_INS [dm6]	A	AT	3.624e^-5	0.726	UPSTREAM Or49b & 1 other INTERGENIC
3L	14851427	3L_14851427_SNP [dm3] 3L_14858327_SNP [dm6]	G	C	3.662e^-5	0.726	INTRON CG17839
X	10847678	X_10847678_SNP [dm3] X_10953645_SNP [dm6]	T	C	3.815e^-5	0.726	UPSTREAM Myo10A INTRON Myo10A
2R	10090147	2R_10090147_SNP [dm3] 2R_14202642_SNP [dm6]	T	C	3.859e^-5	0.726	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19100728	2R_19100728_DEL [dm3] 2R_23213205_DEL [dm6]	TCAATAAAAGTGTT...	T	3.905e^-5	0.726	INTERGENIC
X	4103583	X_4103583_SNP [dm3] X_4209550_SNP [dm6]	G	T	3.923e^-5	0.726	INTERGENIC
2R	8552061	2R_8552061_SNP [dm3] 2R_12664556_SNP [dm6]	G	A	3.966e^-5	0.726	INTRON nemy
3L	10691838	3L_10691838_SNP [dm3] 3L_10698738_SNP [dm6]	A	G	3.968e^-5	0.726	INTERGENIC
X	15896888	X_15896888_SNP [dm3] X_16002855_SNP [dm6]	C	A	4.096e^-5	0.726	INTRON vap
2L	768180	2L_768180_SNP [dm3] 2L_768180_SNP [dm6]	G	T	4.119e^-5	0.726	INTERGENIC
2R	17024252	2R_17024252_SNP [dm3] 2R_21136747_SNP [dm6]	C	T	4.205e^-5	0.726	INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5893684	3R_5893684_SNP [dm3] 3R_10067962_SNP [dm6]	C	T	4.218e^-5	0.726	NON_SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
2L	10722478	2L_10722478_SNP [dm3] 2L_10722478_SNP [dm6]	A	T	4.312e^-5	0.726	INTERGENIC
3R	15957390	3R_15957390_SNP [dm3] 3R_20131668_SNP [dm6]	A	G	4.341e^-5	0.726	INTERGENIC
2R	18714942	2R_18714942_SNP [dm3] 2R_22827419_SNP [dm6]	G	A	4.395e^-5	0.726	INTRON CG30274 & 1 other
2R	19122168	2R_19122168_SNP [dm3] 2R_23234645_SNP [dm6]	G	A	4.482e^-5	0.726	DOWNSTREAM CG3092 INTERGENIC
X	12805259	X_12805259_SNP [dm3] X_12911226_SNP [dm6]	A	G	4.502e^-5	0.726	INTRON CG4645
2L	1089500	2L_1089500_SNP [dm3] 2L_1089500_SNP [dm6]	C	T	4.517e^-5	0.726	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2912498	2L_2912498_SNP [dm3] 2L_2912498_SNP [dm6]	A	G	4.600e^-5	0.726	INTRON lilli
2R	1547153	2R_1547153_SNP [dm3] 2R_5659648_SNP [dm6]	A	G	4.602e^-5	0.726	INTRON Not3
2R	14114347	2R_14114347_SNP [dm3] 2R_18226842_SNP [dm6]	C	T	4.720e^-5	0.726	DOWNSTREAM CR45311 EXON CR45310
2L	8751674	2L_8751674_SNP [dm3] 2L_8751674_SNP [dm6]	A	T	4.739e^-5	0.726	UPSTREAM CG12438 DOWNSTREAM CG45307 INTERGENIC
2R	18750354	2R_18750354_SNP [dm3] 2R_22862831_SNP [dm6]	T	C	4.747e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11044404	X_11044404_SNP [dm3] X_11150371_SNP [dm6]	C	G	4.763e^-5	0.726	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6096102	3L_6096102_SNP [dm3] 3L_6103002_SNP [dm6]	A	G	4.790e^-5	0.726	INTRON Ets65A
3R	24234745	3R_24234745_SNP [dm3] 3R_28409023_SNP [dm6]	T	C	4.879e^-5	0.726	INTERGENIC
2L	11065138	2L_11065138_SNP [dm3] 2L_11065138_SNP [dm6]	C	A	4.886e^-5	0.726	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5256474	3R_5256474_SNP [dm3] 3R_9430752_SNP [dm6]	G	C	4.943e^-5	0.726	INTRON ps
2L	7760144	2L_7760144_SNP [dm3] 2L_7760144_SNP [dm6]	T	C	4.949e^-5	0.726	INTRON CG7196
3L	23140303	3L_23140303_SNP [dm3] 3L_23147203_SNP [dm6]	A	C	4.982e^-5	0.726	DOWNSTREAM CG32350 INTERGENIC	transposable element FlyBase
3L	23088984	3L_23088984_SNP [dm3] 3L_23095884_SNP [dm6]	C	T	5.008e^-5	0.726	UPSTREAM RpL10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	9799887	X_9799887_SNP [dm3] X_9905854_SNP [dm6]	A	T	5.013e^-5	0.726	INTERGENIC
3R	17453093	3R_17453093_SNP [dm3] 3R_21627371_SNP [dm6]	T	C	5.014e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453096	3R_17453096_SNP [dm3] 3R_21627374_SNP [dm6]	T	A	5.014e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453119	3R_17453119_INS [dm3] 3R_21627397_INS [dm6]	C	TT	5.014e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453176	3R_17453176_SNP [dm3] 3R_21627454_SNP [dm6]	T	C	5.014e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26601684	3R_26601684_SNP [dm3] 3R_30775962_SNP [dm6]	A	G	5.043e^-5	0.726	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22443524	3R_22443524_SNP [dm3] 3R_26617802_SNP [dm6]	G	A	5.048e^-5	0.726	INTERGENIC
2L	1107996	2L_1107996_SNP [dm3] 2L_1107996_SNP [dm6]	G	C	5.053e^-5	0.726	UPSTREAM CG14339 INTRON mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	23115856	3L_23115856_SNP [dm3] 3L_23122756_SNP [dm6]	T	A	5.068e^-5	0.726	INTERGENIC	transposable element FlyBase
2L	2704549	2L_2704549_SNP [dm3] 2L_2704549_SNP [dm6]	T	C	5.070e^-5	0.726	INTRON CG31690
3R	14686141	3R_14686141_SNP [dm3] 3R_18860419_SNP [dm6]	A	G	5.107e^-5	0.726	INTERGENIC
X	3434372	X_3434372_SNP [dm3] X_3540339_SNP [dm6]	G	T	5.148e^-5	0.726	INTRON CG32791
3L	14832232	3L_14832232_SNP [dm3] 3L_14839132_SNP [dm6]	T	G	5.155e^-5	0.726	INTRON CG17839
3R	16492911	3R_16492911_SNP [dm3] 3R_20667189_SNP [dm6]	T	G	5.174e^-5	0.726	INTERGENIC
3R	22443519	3R_22443519_SNP [dm3] 3R_26617797_SNP [dm6]	T	G	5.215e^-5	0.726	INTERGENIC
3L	23115857	3L_23115857_SNP [dm3] 3L_23122757_SNP [dm6]	G	A	5.215e^-5	0.726	INTERGENIC	transposable element FlyBase
3R	17675609	3R_17675609_SNP [dm3] 3R_21849887_SNP [dm6]	C	T	5.278e^-5	0.726	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11064724	2L_11064724_SNP [dm3] 2L_11064724_SNP [dm6]	A	T	5.279e^-5	0.726	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25930542	3R_25930542_SNP [dm3] 3R_30104820_SNP [dm6]	C	G	5.336e^-5	0.726	INTRON sima
2R	17730433	2R_17730433_DEL [dm3] 2R_21842928_DEL [dm6]	TGAAATTT	C	5.440e^-5	0.726	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25747111	3R_25747111_SNP [dm3] 3R_29921389_SNP [dm6]	A	T	5.445e^-5	0.726	UPSTREAM Jon99Ciii INTERGENIC
2R	17730465	2R_17730465_SNP [dm3] 2R_21842960_SNP [dm6]	G	T	5.455e^-5	0.726	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7814184	2R_7814184_SNP [dm3] 2R_11926679_SNP [dm6]	T	C	5.479e^-5	0.726	INTERGENIC
3L	23122302	3L_23122302_SNP [dm3] 3L_23129202_SNP [dm6]	T	A	5.488e^-5	0.726	INTRON CG33217	transposable element FlyBase
3R	22443765	3R_22443765_DEL [dm3] 3R_26618043_DEL [dm6]	CC	C	5.595e^-5	0.726	INTERGENIC
X	18414524	X_18414524_SNP [dm3] X_18520491_SNP [dm6]	T	A	5.655e^-5	0.726	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	577186	3L_577186_SNP [dm3] 3L_577186_SNP [dm6]	C	A	5.742e^-5	0.726	UTR_3_PRIME hipk
3L	23090016	3L_23090016_SNP [dm3] 3L_23096916_SNP [dm6]	T	C	5.750e^-5	0.726	UPSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
2R	10089922	2R_10089922_SNP [dm3] 2R_14202417_SNP [dm6]	A	G	5.781e^-5	0.726	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1313574	3L_1313574_SNP [dm3] 3L_1313574_SNP [dm6]	C	G	5.793e^-5	0.726	UPSTREAM CG9153 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	10869048	2L_10869048_SNP [dm3] 2L_10869048_SNP [dm6]	A	T	5.881e^-5	0.726	INTERGENIC
2L	3760024	2L_3760024_SNP [dm3] 2L_3760024_SNP [dm6]	C	G	5.890e^-5	0.726	UTR_5_PRIME CG43707 INTRON CG43707
3L	23116718	3L_23116718_SNP [dm3] 3L_23123618_SNP [dm6]	G	A	5.924e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18734236	2R_18734236_SNP [dm3] 2R_22846713_SNP [dm6]	C	A	5.946e^-5	0.726	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24140445	3R_24140445_SNP [dm3] 3R_28314723_SNP [dm6]	A	T	5.955e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15523834	3L_15523834_INS [dm3] 3L_15530734_INS [dm6]	C	CTGATGGAC	6.003e^-5	0.726	FRAME_SHIFT CG43248 INTRON CG43248	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	23122197	3L_23122197_SNP [dm3] 3L_23129097_SNP [dm6]	T	C	6.025e^-5	0.726	INTRON CG33217	transposable element FlyBase
3L	17020085	3L_17020085_SNP [dm3] 3L_17026985_SNP [dm6]	C	T	6.053e^-5	0.726	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3L	23137428	3L_23137428_SNP [dm3] 3L_23144328_SNP [dm6]	G	A	6.056e^-5	0.726	INTERGENIC
2L	11065109	2L_11065109_INS [dm3] 2L_11065109_INS [dm6]	A	AC	6.084e^-5	0.726	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13015582	3R_13015582_SNP [dm3] 3R_17189860_SNP [dm6]	A	T	6.127e^-5	0.726	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18414535	X_18414535_SNP [dm3] X_18520502_SNP [dm6]	A	C	6.146e^-5	0.726	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	17453544	3R_17453544_SNP [dm3] 3R_21627822_SNP [dm6]	G	T	6.186e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl
2R	17706102	2R_17706102_SNP [dm3] 2R_21818597_SNP [dm6]	G	T	6.194e^-5	0.726	INTERGENIC	transposable element FlyBase
2R	8734766	2R_8734766_SNP [dm3] 2R_12847261_SNP [dm6]	T	C	6.278e^-5	0.726	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
3L	1193287	3L_1193287_SNP [dm3] 3L_1193287_SNP [dm6]	C	T	6.288e^-5	0.726	UPSTREAM Trh INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18211487	3L_18211487_SNP [dm3] 3L_18218387_SNP [dm6]	T	A	6.322e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17453122	3R_17453122_SNP [dm3] 3R_21627400_SNP [dm6]	C	G	6.371e^-5	0.726	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14686143	3R_14686143_SNP [dm3] 3R_18860421_SNP [dm6]	G	A	6.377e^-5	0.726	INTERGENIC
2R	18750245	2R_18750245_SNP [dm3] 2R_22862722_SNP [dm6]	A	G	6.398e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5219223	2R_5219223_DEL [dm3] 2R_9331718_DEL [dm6]	AG	A	6.469e^-5	0.726	INTRON CG13954 & 1 other
3R	14369024	3R_14369024_SNP [dm3] 3R_18543302_SNP [dm6]	T	C	6.472e^-5	0.726	INTRON fru
2R	5219242	2R_5219242_SNP [dm3] 2R_9331737_SNP [dm6]	A	G	6.545e^-5	0.726	INTRON CG13954 & 1 other
3R	24140442	3R_24140442_SNP [dm3] 3R_28314720_SNP [dm6]	G	C	6.552e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	15896793	X_15896793_SNP [dm3] X_16002760_SNP [dm6]	A	G	6.644e^-5	0.726	INTRON vap
2R	17730486	2R_17730486_SNP [dm3] 2R_21842981_SNP [dm6]	C	A	6.658e^-5	0.726	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6242286	3L_6242286_SNP [dm3] 3L_6249186_SNP [dm6]	T	C	6.679e^-5	0.726	INTRON Best2
X	18414499	X_18414499_SNP [dm3] X_18520466_SNP [dm6]	T	C	6.766e^-5	0.726	DOWNSTREAM CG6481 & 1 other INTRON Bx	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01
3L	17020130	3L_17020130_SNP [dm3] 3L_17027030_SNP [dm6]	C	T	6.848e^-5	0.726	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3R	27089767	3R_27089767_SNP [dm3] 3R_31264045_SNP [dm6]	T	A	6.852e^-5	0.726	DOWNSTREAM CG18673 INTERGENIC
3L	1213585	3L_1213585_SNP [dm3] 3L_1213585_SNP [dm6]	T	C	6.871e^-5	0.726	DOWNSTREAM LysE INTRON mwh
3R	27089835	3R_27089835_SNP [dm3] 3R_31264113_SNP [dm6]	A	T	6.896e^-5	0.726	DOWNSTREAM CG18673 INTERGENIC
2R	8737548	2R_8737548_SNP [dm3] 2R_12850043_SNP [dm6]	T	G	6.919e^-5	0.726	SPLICE_SITE_ACCEPTOR CG17574 SPLICE_SITE_REGION CG17574 DOWNSTREAM CR45468 INTRON CG17574
X	16081845	X_16081845_SNP [dm3] X_16187812_SNP [dm6]	C	A	6.925e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13038068	X_13038068_SNP [dm3] X_13144035_SNP [dm6]	C	T	6.979e^-5	0.727	INTRON CG32645
3R	25927541	3R_25927541_SNP [dm3] 3R_30101819_SNP [dm6]	G	A	7.173e^-5	0.743	INTRON sima
2R	17115676	2R_17115676_SNP [dm3] 2R_21228171_SNP [dm6]	T	C	7.386e^-5	0.749	INTRON ASPP
2R	17683859	2R_17683859_SNP [dm3] 2R_21796354_SNP [dm6]	T	A	7.408e^-5	0.749	UPSTREAM CG34204 INTERGENIC
3L	23097932	3L_23097932_SNP [dm3] 3L_23104832_SNP [dm6]	T	C	7.418e^-5	0.749	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19203920	3L_19203920_SNP [dm3] 3L_19210820_SNP [dm6]	A	G	7.426e^-5	0.749	INTRON fz2	TF binding site mE1_TFBS_Kr
3R	27091111	3R_27091111_SNP [dm3] 3R_31265389_SNP [dm6]	C	G	7.497e^-5	0.749	UPSTREAM ppk24 INTERGENIC
2R	8735731	2R_8735731_SNP [dm3] 2R_12848226_SNP [dm6]	A	G	7.518e^-5	0.749	SYNONYMOUS_CODING CG30486 UPSTREAM antr EXON CR45468
X	3047443	X_3047443_SNP [dm3] X_3153410_SNP [dm6]	C	T	7.533e^-5	0.749	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2704061	2L_2704061_SNP [dm3] 2L_2704061_SNP [dm6]	G	A	7.576e^-5	0.749	INTRON CG31690
3L	571098	3L_571098_SNP [dm3] 3L_571098_SNP [dm6]	G	A	7.583e^-5	0.749	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17730586	2R_17730586_SNP [dm3] 2R_21843081_SNP [dm6]	A	G	7.677e^-5	0.75	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3760037	2L_3760037_SNP [dm3] 2L_3760037_SNP [dm6]	T	C	7.698e^-5	0.75	UTR_5_PRIME CG43707 INTRON CG43707
2R	9170693	2R_9170693_SNP [dm3] 2R_13283188_SNP [dm6]	T	A	7.713e^-5	0.75	INTRON Dh31-R
3L	1193419	3L_1193419_SNP [dm3] 3L_1193419_SNP [dm6]	G	A	7.841e^-5	0.75	UPSTREAM Trh INTERGENIC
2L	7363466	2L_7363466_SNP [dm3] 2L_7363466_SNP [dm6]	C	T	7.850e^-5	0.75	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5855037	2L_5855037_SNP [dm3] 2L_5855037_SNP [dm6]	T	C	7.920e^-5	0.75	INTRON TrissinR	TF binding site mE1_TFBS_HSA
2R	9170903	2R_9170903_SNP [dm3] 2R_13283398_SNP [dm6]	C	A	8.050e^-5	0.75	INTRON Dh31-R
3L	20359189	3L_20359189_SNP [dm3] 3L_20366089_SNP [dm6]	G	A	8.113e^-5	0.75	UPSTREAM Toll-9 INTRON Toll-9	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	4474775	2R_4474775_SNP [dm3] 2R_8587270_SNP [dm6]	T	G	8.117e^-5	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27068267	3R_27068267_SNP [dm3] 3R_31242545_SNP [dm6]	T	C	8.288e^-5	0.75	INTRON qless
3R	16522242	3R_16522242_SNP [dm3] 3R_20696520_SNP [dm6]	G	A	8.309e^-5	0.75	INTRON Oamb
2R	4559862	2R_4559862_SNP [dm3] 2R_8672357_SNP [dm6]	C	G	8.383e^-5	0.75	UTR_5_PRIME Acsl INTRON Acsl
3R	20854334	3R_20854334_SNP [dm3] 3R_25028612_SNP [dm6]	A	G	8.397e^-5	0.75	SYNONYMOUS_CODING Hr96 DOWNSTREAM Smg6
2R	17115678	2R_17115678_SNP [dm3] 2R_21228173_SNP [dm6]	T	C	8.403e^-5	0.75	INTRON ASPP
2R	18867616	2R_18867616_SNP [dm3] 2R_22980093_SNP [dm6]	G	A	8.458e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19038348	2R_19038348_SNP [dm3] 2R_23150825_SNP [dm6]	T	A	8.492e^-5	0.75	INTERGENIC
3L	12524915	3L_12524915_SNP [dm3] 3L_12531815_SNP [dm6]	G	A	8.492e^-5	0.75	INTRON Tsf2	TF binding site mE1_TFBS_sens
3R	17752632	3R_17752632_DEL [dm3] 3R_21926910_DEL [dm6]	AA	A	8.539e^-5	0.75	INTERGENIC
X	1539850	X_1539850_SNP [dm3] X_1645817_SNP [dm6]	C	T	8.614e^-5	0.75	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2L	18631515	2L_18631515_SNP [dm3] 2L_18631515_SNP [dm6]	G	C	8.706e^-5	0.75	INTRON MESR3
3L	10242204	3L_10242204_INS [dm3] 3L_10249104_INS [dm6]	A	ACGTTGTGTTC...	8.713e^-5	0.75	UPSTREAM CR44540 INTERGENIC
3L	11265837	3L_11265837_SNP [dm3] 3L_11272737_SNP [dm6]	T	A	8.771e^-5	0.75	INTERGENIC
3R	25930691	3R_25930691_SNP [dm3] 3R_30104969_SNP [dm6]	C	A	8.857e^-5	0.75	INTRON sima
3R	18558013	3R_18558013_SNP [dm3] 3R_22732291_SNP [dm6]	C	T	8.974e^-5	0.75	UTR_3_PRIME CG45049 DOWNSTREAM Takl2
3L	2597301	3L_2597301_SNP [dm3] 3L_2597301_SNP [dm6]	C	T	8.977e^-5	0.75	NON_SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_cad
2L	9447002	2L_9447002_SNP [dm3] 2L_9447002_SNP [dm6]	A	C	9.031e^-5	0.75	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	10089886	2R_10089886_SNP [dm3] 2R_14202381_SNP [dm6]	G	A	9.035e^-5	0.75	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12705219	3L_12705219_SNP [dm3] 3L_12712119_SNP [dm6]	G	T	9.044e^-5	0.75	INTERGENIC
3L	3367965	3L_3367965_SNP [dm3] 3L_3367965_SNP [dm6]	A	T	9.045e^-5	0.75	UTR_3_PRIME kst
X	10846821	X_10846821_SNP [dm3] X_10952788_SNP [dm6]	C	A	9.049e^-5	0.75	UPSTREAM Rab9Fb INTRON Myo10A
3R	1477419	3R_1477419_SNP [dm3] 3R_5651697_SNP [dm6]	C	A	9.054e^-5	0.75	SYNONYMOUS_CODING Sec23 DOWNSTREAM elm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22173102	2L_22173102_SNP [dm3] 2L_22173102_SNP [dm6]	G	C	9.111e^-5	0.75	INTERGENIC	transposable element FlyBase
3R	25930552	3R_25930552_SNP [dm3] 3R_30104830_SNP [dm6]	T	C	9.128e^-5	0.75	INTRON sima
3L	6695011	3L_6695011_SNP [dm3] 3L_6701911_SNP [dm6]	T	A	9.128e^-5	0.75	INTRON SP1173
3L	1209706	3L_1209706_SNP [dm3] 3L_1209706_SNP [dm6]	G	C	9.151e^-5	0.75	UPSTREAM LysC INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	17730499	2R_17730499_SNP [dm3] 2R_21842994_SNP [dm6]	A	G	9.195e^-5	0.75	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25927893	3R_25927893_SNP [dm3] 3R_30102171_SNP [dm6]	C	T	9.323e^-5	0.75	INTRON sima	TF binding site mE1_TFBS_inv
3L	13143631	3L_13143631_SNP [dm3] 3L_13150531_SNP [dm6]	A	G	9.330e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5227706	2L_5227706_SNP [dm3] 2L_5227706_SNP [dm6]	T	G	9.387e^-5	0.75	INTRON tkv
3R	24234831	3R_24234831_SNP [dm3] 3R_28409109_SNP [dm6]	G	A	9.410e^-5	0.75	INTERGENIC
3L	13143638	3L_13143638_SNP [dm3] 3L_13150538_SNP [dm6]	G	T	9.423e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8551869	2R_8551869_SNP [dm3] 2R_12664364_SNP [dm6]	G	A	9.508e^-5	0.75	INTRON nemy
2R	8552049	2R_8552049_SNP [dm3] 2R_12664544_SNP [dm6]	C	T	9.508e^-5	0.75	INTRON nemy
3R	27089596	3R_27089596_SNP [dm3] 3R_31263874_SNP [dm6]	C	A	9.522e^-5	0.75	UTR_3_PRIME CG18673
2R	14096678	2R_14096678_SNP [dm3] 2R_18209173_SNP [dm6]	T	A	9.546e^-5	0.75	UPSTREAM CR45147 DOWNSTREAM CG30114 INTERGENIC
2L	5255671	2L_5255671_SNP [dm3] 2L_5255671_SNP [dm6]	A	C	9.661e^-5	0.75	INTRON tkv	TF binding site mE1_TFBS_cad
2R	7814298	2R_7814298_SNP [dm3] 2R_11926793_SNP [dm6]	C	T	9.690e^-5	0.75	INTERGENIC
3L	17384944	3L_17384944_SNP [dm3] 3L_17391844_SNP [dm6]	A	G	9.714e^-5	0.75	INTERGENIC	TF binding site mE1_TFBS_kn
2R	19613427	2R_19613427_SNP [dm3] 2R_23725904_SNP [dm6]	T	G	9.729e^-5	0.75	INTRON Sesn
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	9.800e^-5	0.75	INTRON Oamb
X	11044387	X_11044387_SNP [dm3] X_11150354_SNP [dm6]	G	A	9.824e^-5	0.75	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22073529	3R_22073529_SNP [dm3] 3R_26247807_SNP [dm6]	A	G	9.850e^-5	0.75	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	19575466	X_19575466_SNP [dm3] X_19681433_SNP [dm6]	C	A	9.860e^-5	0.75	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7813308	2R_7813308_SNP [dm3] 2R_11925803_SNP [dm6]	T	C	9.948e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	19574301	X_19574301_INS [dm3] X_19680268_INS [dm6]	C	CTAC	9.994e^-5	0.75	INTRON dome	regulatory region REDfly_CRMs
2R	9152501	2R_9152501_SNP [dm3] 2R_13264996_SNP [dm6]	G	A	1.004e^-4	0.75	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
X	3626530	X_3626530_SNP [dm3] X_3732497_SNP [dm6]	C	A	1.010e^-4	0.75	INTRON tlk
3R	19189351	3R_19189351_SNP [dm3] 3R_23363629_SNP [dm6]	T	C	1.010e^-4	0.75	UPSTREAM CG4408 INTERGENIC
3R	24984562	3R_24984562_SNP [dm3] 3R_29158840_SNP [dm6]	C	T	1.010e^-4	0.75	INTRON CG11897	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	13053674	3R_13053674_SNP [dm3] 3R_17227952_SNP [dm6]	G	C	1.021e^-4	0.75	INTERGENIC
3R	4051573	3R_4051573_SNP [dm3] 3R_8225851_SNP [dm6]	C	A	1.025e^-4	0.75	EXON CR45551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13262932	3R_13262932_SNP [dm3] 3R_17437210_SNP [dm6]	G	A	1.031e^-4	0.75	INTRON CG5873
2R	11874222	2R_11874222_SNP [dm3] 2R_15986717_SNP [dm6]	G	T	1.034e^-4	0.75	UPSTREAM CR45021 INTRON Strn-Mlck
2R	20095354	2R_20095354_SNP [dm3] 2R_24207831_SNP [dm6]	A	T	1.034e^-4	0.75	UPSTREAM CG11406 INTRON CG11406
2L	13893827	2L_13893827_SNP [dm3] 2L_13893827_SNP [dm6]	C	A	1.044e^-4	0.75	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	12524912	3L_12524912_INS [dm3] 3L_12531812_INS [dm6]	A	AC	1.050e^-4	0.75	INTRON Tsf2	TF binding site mE1_TFBS_sens
3R	11868783	3R_11868783_SNP [dm3] 3R_16043061_SNP [dm6]	A	C	1.050e^-4	0.75	UPSTREAM CG10264 INTERGENIC	insulator Insulator_Class_II.mE01
2R	18163969	2R_18163969_SNP [dm3] 2R_22276464_SNP [dm6]	T	G	1.051e^-4	0.75	INTRON dve
2L	15537381	2L_15537381_SNP [dm3] 2L_15537381_SNP [dm6]	C	G	1.052e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24234681	3R_24234681_SNP [dm3] 3R_28408959_SNP [dm6]	T	G	1.057e^-4	0.75	INTERGENIC
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	1.060e^-4	0.75	INTRON CG45002
3L	5465606	3L_5465606_SNP [dm3] 3L_5472506_SNP [dm6]	T	A	1.066e^-4	0.75	INTERGENIC
2R	12342685	2R_12342685_SNP [dm3] 2R_16455180_SNP [dm6]	A	G	1.067e^-4	0.75	INTERGENIC
2L	22175552	2L_22175552_SNP [dm3] 2L_22175552_SNP [dm6]	T	C	1.072e^-4	0.75	SYNONYMOUS_CODING CG3635
3R	13053680	3R_13053680_SNP [dm3] 3R_17227958_SNP [dm6]	T	G	1.073e^-4	0.75	INTERGENIC
3L	5920467	3L_5920467_SNP [dm3] 3L_5927367_SNP [dm6]	G	A	1.076e^-4	0.75	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13143629	3L_13143629_INS [dm3] 3L_13150529_INS [dm6]	G	GGGTCCGTTGG...	1.082e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1151707	2R_1151707_SNP [dm3] 2R_5264202_SNP [dm6]	C	T	1.083e^-4	0.75	INTRON d4	transposable element FlyBase
3R	17203540	3R_17203540_INS [dm3] 3R_21377818_INS [dm6]	A	AA	1.085e^-4	0.75	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11535640	3L_11535640_DEL [dm3] 3L_11542540_DEL [dm6]	TGCTGCT	T	1.089e^-4	0.75	CODON_DELETION Mob2 INTRON Mob2
2R	18750236	2R_18750236_SNP [dm3] 2R_22862713_SNP [dm6]	G	C	1.091e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16949034	2L_16949034_SNP [dm3] 2L_16949034_SNP [dm6]	T	A	1.097e^-4	0.75	INTRON CR44393
3R	23328919	3R_23328919_SNP [dm3] 3R_27503197_SNP [dm6]	G	T	1.097e^-4	0.75	UPSTREAM CG5402 INTERGENIC
X	19575035	X_19575035_SNP [dm3] X_19681002_SNP [dm6]	A	T	1.103e^-4	0.75	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14967587	3R_14967587_SNP [dm3] 3R_19141865_SNP [dm6]	G	A	1.112e^-4	0.75	INTRON Ppcs
2R	14097783	2R_14097783_SNP [dm3] 2R_18210278_SNP [dm6]	C	T	1.115e^-4	0.75	EXON CR45147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1452310	3R_1452310_SNP [dm3] 3R_5626588_SNP [dm6]	G	A	1.119e^-4	0.75	DOWNSTREAM RpL13A INTERGENIC
3R	17799566	3R_17799566_SNP [dm3] 3R_21973844_SNP [dm6]	C	T	1.134e^-4	0.75	INTRON Eip93F
X	3626543	X_3626543_SNP [dm3] X_3732510_SNP [dm6]	T	G	1.142e^-4	0.75	INTRON tlk
3R	10416911	3R_10416911_SNP [dm3] 3R_14591189_SNP [dm6]	A	G	1.146e^-4	0.75	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19574282	X_19574282_MNP [dm3] X_19680249_MNP [dm6]	TTT	AAA	1.153e^-4	0.75	INTRON dome	regulatory region REDfly_CRMs
X	19574296	X_19574296_INS [dm3] X_19680263_INS [dm6]	A	AA	1.153e^-4	0.75	INTRON dome	regulatory region REDfly_CRMs
2L	9444683	2L_9444683_SNP [dm3] 2L_9444683_SNP [dm6]	T	C	1.155e^-4	0.75	INTRON numb
3R	10016827	3R_10016827_SNP [dm3] 3R_14191105_SNP [dm6]	G	C	1.159e^-4	0.75	INTRON Dop1R1
3R	22443561	3R_22443561_SNP [dm3] 3R_26617839_SNP [dm6]	C	T	1.161e^-4	0.75	INTERGENIC
3R	20648933	3R_20648933_SNP [dm3] 3R_24823211_SNP [dm6]	T	C	1.171e^-4	0.75	SYNONYMOUS_CODING niki DOWNSTREAM Saf-B	TF binding site mE1_TFBS_cad
3L	23096890	3L_23096890_SNP [dm3] 3L_23103790_SNP [dm6]	C	A	1.175e^-4	0.75	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
3R	13062023	3R_13062023_SNP [dm3] 3R_17236301_SNP [dm6]	T	C	1.175e^-4	0.75	INTRON beat-IIb
2R	17408774	2R_17408774_SNP [dm3] 2R_21521269_SNP [dm6]	C	G	1.175e^-4	0.75	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288
3R	25747088	3R_25747088_SNP [dm3] 3R_29921366_SNP [dm6]	T	C	1.176e^-4	0.75	UPSTREAM Jon99Ciii INTERGENIC
2R	17683865	2R_17683865_SNP [dm3] 2R_21796360_SNP [dm6]	C	T	1.177e^-4	0.75	UPSTREAM CG34204 INTERGENIC
2R	19048469	2R_19048469_SNP [dm3] 2R_23160946_SNP [dm6]	A	G	1.178e^-4	0.75	SPLICE_SITE_REGION CG9899 INTRON CG9899
2R	19048470	2R_19048470_SNP [dm3] 2R_23160947_SNP [dm6]	G	A	1.178e^-4	0.75	SPLICE_SITE_REGION CG9899 INTRON CG9899
2R	18735115	2R_18735115_SNP [dm3] 2R_22847592_SNP [dm6]	T	C	1.180e^-4	0.75	DOWNSTREAM CG13531 INTRON CG3649	TF binding site mE1_TFBS_cad
2R	9154694	2R_9154694_SNP [dm3] 2R_13267189_SNP [dm6]	A	T	1.188e^-4	0.75	DOWNSTREAM CG42319 & 1 other INTERGENIC
3L	6092254	3L_6092254_SNP [dm3] 3L_6099154_SNP [dm6]	A	T	1.188e^-4	0.75	INTRON Ets65A
X	19574298	X_19574298_SNP [dm3] X_19680265_SNP [dm6]	G	T	1.193e^-4	0.75	INTRON dome	regulatory region REDfly_CRMs
2R	10135727	2R_10135727_SNP [dm3] 2R_14248222_SNP [dm6]	C	A	1.199e^-4	0.75	SYNONYMOUS_CODING Mdr50
2R	9170635	2R_9170635_SNP [dm3] 2R_13283130_SNP [dm6]	C	T	1.202e^-4	0.75	INTRON Dh31-R
2L	10721400	2L_10721400_SNP [dm3] 2L_10721400_SNP [dm6]	G	T	1.220e^-4	0.75	INTERGENIC
3R	15957387	3R_15957387_SNP [dm3] 3R_20131665_SNP [dm6]	C	T	1.221e^-4	0.75	INTERGENIC
3R	16833348	3R_16833348_SNP [dm3] 3R_21007626_SNP [dm6]	G	T	1.224e^-4	0.75	UPSTREAM CG10827 INTRON Calx	TF binding site mE1_TFBS_sbb
3L	6096090	3L_6096090_SNP [dm3] 3L_6102990_SNP [dm6]	T	G	1.248e^-4	0.75	INTRON Ets65A
3L	954888	3L_954888_SNP [dm3] 3L_954888_SNP [dm6]	T	G	1.252e^-4	0.75	INTRON Glut1
3R	15633398	3R_15633398_SNP [dm3] 3R_19807676_SNP [dm6]	A	C	1.256e^-4	0.75	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25747094	3R_25747094_SNP [dm3] 3R_29921372_SNP [dm6]	A	G	1.263e^-4	0.75	UPSTREAM Jon99Ciii INTERGENIC
2L	10721516	2L_10721516_SNP [dm3] 2L_10721516_SNP [dm6]	A	C	1.268e^-4	0.75	INTERGENIC
2R	16394601	2R_16394601_SNP [dm3] 2R_20507096_SNP [dm6]	T	A	1.269e^-4	0.75	UPSTREAM CR44644 DOWNSTREAM CR44645 INTERGENIC
3L	23089375	3L_23089375_DEL [dm3] 3L_23096275_DEL [dm6]	TTTGT	T	1.270e^-4	0.75	UPSTREAM RpL10 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10724005	2L_10724005_SNP [dm3] 2L_10724005_SNP [dm6]	C	T	1.272e^-4	0.75	UPSTREAM CG6431 INTERGENIC
3L	17644125	3L_17644125_DEL [dm3] 3L_17651025_DEL [dm6]	CTTGTTATAAAC...	C	1.276e^-4	0.75	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5449699	2L_5449699_SNP [dm3] 2L_5449699_SNP [dm6]	G	T	1.280e^-4	0.75	INTERGENIC
2R	9314090	2R_9314090_SNP [dm3] 2R_13426585_SNP [dm6]	T	A	1.292e^-4	0.75	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
3L	22249795	3L_22249795_SNP [dm3] 3L_22256695_SNP [dm6]	T	C	1.294e^-4	0.75	INTERGENIC
2L	5140633	2L_5140633_SNP [dm3] 2L_5140633_SNP [dm6]	T	C	1.297e^-4	0.75	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
X	4586018	X_4586018_SNP [dm3] X_4691985_SNP [dm6]	C	T	1.302e^-4	0.75	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	3583289	X_3583289_SNP [dm3] X_3689256_SNP [dm6]	T	A	1.311e^-4	0.75	UPSTREAM Mnt INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2168524	3L_2168524_SNP [dm3] 3L_2168524_SNP [dm6]	T	C	1.317e^-4	0.75	SYNONYMOUS_CODING CG15879
3R	5792487	3R_5792487_SNP [dm3] 3R_9966765_SNP [dm6]	C	T	1.321e^-4	0.75	INTRON Glut4EF
2L	2912691	2L_2912691_SNP [dm3] 2L_2912691_SNP [dm6]	T	C	1.324e^-4	0.75	INTRON lilli
3R	17176577	3R_17176577_SNP [dm3] 3R_21350855_SNP [dm6]	A	C	1.331e^-4	0.75	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20872763	2L_20872763_SNP [dm3] 2L_20872763_SNP [dm6]	T	C	1.333e^-4	0.75	UTR_3_PRIME sky & 1 other DOWNSTREAM sky
2L	13194555	2L_13194555_SNP [dm3] 2L_13194555_SNP [dm6]	A	T	1.338e^-4	0.75	INTRON Edem2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24140417	3R_24140417_SNP [dm3] 3R_28314695_SNP [dm6]	G	C	1.338e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9151369	3R_9151369_SNP [dm3] 3R_13325647_SNP [dm6]	G	T	1.344e^-4	0.75	INTERGENIC
3R	16522241	3R_16522241_SNP [dm3] 3R_20696519_SNP [dm6]	G	A	1.346e^-4	0.75	INTRON Oamb
2L	10721552	2L_10721552_SNP [dm3] 2L_10721552_SNP [dm6]	G	A	1.360e^-4	0.75	INTERGENIC
X	1539744	X_1539744_SNP [dm3] X_1645711_SNP [dm6]	C	T	1.360e^-4	0.75	DOWNSTREAM br INTRON Mur2B & 1 other
2R	18573438	2R_18573438_DEL [dm3] 2R_22685933_DEL [dm6]	TATT	T	1.369e^-4	0.75	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17203892	3R_17203892_SNP [dm3] 3R_21378170_SNP [dm6]	C	T	1.369e^-4	0.75	UPSTREAM mod_mdg4_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	25930605	3R_25930605_SNP [dm3] 3R_30104883_SNP [dm6]	T	C	1.371e^-4	0.75	INTRON sima
3R	19044968	3R_19044968_SNP [dm3] 3R_23219246_SNP [dm6]	T	C	1.381e^-4	0.75	UTR_5_PRIME cnc INTRON cnc
3L	17020069	3L_17020069_SNP [dm3] 3L_17026969_SNP [dm6]	C	A	1.381e^-4	0.75	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3L	1994010	3L_1994010_SNP [dm3] 3L_1994010_SNP [dm6]	A	G	1.381e^-4	0.75	INTERGENIC
2L	507075	2L_507075_SNP [dm3] 2L_507075_SNP [dm6]	T	A	1.385e^-4	0.75	INTRON ush
3L	23089148	3L_23089148_SNP [dm3] 3L_23096048_SNP [dm6]	G	A	1.388e^-4	0.75	UPSTREAM RpL10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17730500	2R_17730500_SNP [dm3] 2R_21842995_SNP [dm6]	A	T	1.389e^-4	0.75	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3509319	3L_3509319_SNP [dm3] 3L_3509319_SNP [dm6]	C	G	1.389e^-4	0.75	UTR_3_PRIME CG42324
2L	4571301	2L_4571301_SNP [dm3] 2L_4571301_SNP [dm6]	A	G	1.391e^-4	0.75	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	394019	2L_394019_SNP [dm3] 2L_394019_SNP [dm6]	A	G	1.392e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18735159	2R_18735159_SNP [dm3] 2R_22847636_SNP [dm6]	A	C	1.392e^-4	0.75	SYNONYMOUS_CODING CG3649 DOWNSTREAM CG13531	TF binding site mE1_TFBS_cad
3R	25928031	3R_25928031_SNP [dm3] 3R_30102309_SNP [dm6]	C	T	1.397e^-4	0.75	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8704793	2L_8704793_SNP [dm3] 2L_8704793_SNP [dm6]	G	T	1.409e^-4	0.75	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992
2R	11869509	2R_11869509_SNP [dm3] 2R_15982004_SNP [dm6]	A	G	1.410e^-4	0.75	SYNONYMOUS_CODING Strn-Mlck
X	20151016	X_20151016_SNP [dm3] X_20279989_SNP [dm6]	G	A	1.417e^-4	0.75	INTERGENIC
3R	15957431	3R_15957431_SNP [dm3] 3R_20131709_SNP [dm6]	G	A	1.419e^-4	0.75	INTERGENIC
2R	14495998	2R_14495998_SNP [dm3] 2R_18608493_SNP [dm6]	A	G	1.420e^-4	0.75	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4445949	2R_4445949_SNP [dm3] 2R_8558444_SNP [dm6]	C	T	1.424e^-4	0.75	EXON CR45308
3R	25747154	3R_25747154_SNP [dm3] 3R_29921432_SNP [dm6]	G	A	1.426e^-4	0.75	UPSTREAM Jon99Ciii INTERGENIC
2R	8734036	2R_8734036_SNP [dm3] 2R_12846531_SNP [dm6]	G	A	1.428e^-4	0.75	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4051349	3R_4051349_SNP [dm3] 3R_8225627_SNP [dm6]	A	C	1.429e^-4	0.75	EXON CR45551	TF binding site mE1_TFBS_cad
2R	9714392	2R_9714392_SNP [dm3] 2R_13826887_SNP [dm6]	A	T	1.434e^-4	0.75	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	2699463	X_2699463_SNP [dm3] X_2805430_SNP [dm6]	G	T	1.436e^-4	0.75	INTRON kirre
3L	17384875	3L_17384875_SNP [dm3] 3L_17391775_SNP [dm6]	A	T	1.444e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_kn
2R	18734274	2R_18734274_SNP [dm3] 2R_22846751_SNP [dm6]	G	A	1.446e^-4	0.75	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15749790	3L_15749790_SNP [dm3] 3L_15756690_SNP [dm6]	C	T	1.452e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8273012	2R_8273012_SNP [dm3] 2R_12385507_SNP [dm6]	A	C	1.453e^-4	0.75	DOWNSTREAM CG8501 INTERGENIC
3R	18611281	3R_18611281_SNP [dm3] 3R_22785559_SNP [dm6]	A	T	1.454e^-4	0.75	INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23098016	3L_23098016_SNP [dm3] 3L_23104916_SNP [dm6]	C	T	1.458e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
X	19577530	X_19577530_SNP [dm3] X_19683497_SNP [dm6]	G	T	1.464e^-4	0.75	UTR_5_PRIME dome UPSTREAM Ubqn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11506596	3L_11506596_SNP [dm3] 3L_11513496_SNP [dm6]	G	C	1.465e^-4	0.75	UPSTREAM CG7512 DOWNSTREAM Sgs3 INTERGENIC
2L	1659171	2L_1659171_SNP [dm3] 2L_1659171_SNP [dm6]	G	T	1.466e^-4	0.75	INTRON chinmo
2L	15537402	2L_15537402_SNP [dm3] 2L_15537402_SNP [dm6]	A	G	1.469e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15548549	3R_15548549_SNP [dm3] 3R_19722827_SNP [dm6]	C	A	1.471e^-4	0.75	INTERGENIC
3L	23088746	3L_23088746_SNP [dm3] 3L_23095646_SNP [dm6]	T	C	1.473e^-4	0.75	UPSTREAM RpL10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	13132520	X_13132520_SNP [dm3] X_13238487_SNP [dm6]	A	C	1.475e^-4	0.75	INTRON mew	TF binding site BDTNP1_TFBS_dl
3R	25926917	3R_25926917_SNP [dm3] 3R_30101195_SNP [dm6]	G	T	1.477e^-4	0.75	INTRON sima	TF binding site mE1_TFBS_D
2R	8549348	2R_8549348_SNP [dm3] 2R_12661843_SNP [dm6]	T	C	1.485e^-4	0.75	UPSTREAM nemy INTRON nemy
3R	16388915	3R_16388915_SNP [dm3] 3R_20563193_SNP [dm6]	G	A	1.486e^-4	0.75	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16081828	X_16081828_SNP [dm3] X_16187795_SNP [dm6]	A	C	1.491e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17452472	3R_17452472_SNP [dm3] 3R_21626750_SNP [dm6]	A	G	1.491e^-4	0.75	UTR_5_PRIME E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12705205	3L_12705205_SNP [dm3] 3L_12712105_SNP [dm6]	C	T	1.497e^-4	0.75	INTERGENIC
3R	17176571	3R_17176571_SNP [dm3] 3R_21350849_SNP [dm6]	G	A	1.501e^-4	0.75	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	23090135	3L_23090135_SNP [dm3] 3L_23097035_SNP [dm6]	T	A	1.503e^-4	0.75	UPSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
X	8005397	X_8005397_SNP [dm3] X_8111364_SNP [dm6]	G	A	1.505e^-4	0.75	INTRON Gclc
2R	12322373	2R_12322373_SNP [dm3] 2R_16434868_SNP [dm6]	C	T	1.515e^-4	0.75	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23117486	3L_23117486_SNP [dm3] 3L_23124386_SNP [dm6]	T	C	1.517e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	3902371	3L_3902371_SNP [dm3] 3L_3902371_SNP [dm6]	G	A	1.521e^-4	0.75	UPSTREAM Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	23097690	3L_23097690_SNP [dm3] 3L_23104590_SNP [dm6]	T	G	1.522e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	11044400	X_11044400_SNP [dm3] X_11150367_SNP [dm6]	A	G	1.524e^-4	0.75	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	13012775	3R_13012775_SNP [dm3] 3R_17187053_SNP [dm6]	C	T	1.525e^-4	0.75	INTRON Mur89F
2R	19289933	2R_19289933_SNP [dm3] 2R_23402410_SNP [dm6]	T	G	1.537e^-4	0.751	UPSTREAM CG3520 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17683830	2R_17683830_SNP [dm3] 2R_21796325_SNP [dm6]	T	C	1.540e^-4	0.751	UPSTREAM CG34204 INTERGENIC
3L	23098122	3L_23098122_SNP [dm3] 3L_23105022_SNP [dm6]	G	A	1.544e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24078329	3R_24078329_SNP [dm3] 3R_28252607_SNP [dm6]	C	A	1.549e^-4	0.751	INTERGENIC
2R	17020179	2R_17020179_DEL [dm3] 2R_21132674_DEL [dm6]	AGTG	A	1.551e^-4	0.751	INTRON Magi	TF binding site mE1_TFBS_chinmo
3R	17773310	3R_17773310_SNP [dm3] 3R_21947588_SNP [dm6]	T	C	1.560e^-4	0.751	INTERGENIC
3L	17384968	3L_17384968_SNP [dm3] 3L_17391868_SNP [dm6]	A	T	1.561e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	8529130	X_8529130_SNP [dm3] X_8635097_SNP [dm6]	A	C	1.562e^-4	0.751	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	20435810	3R_20435810_SNP [dm3] 3R_24610088_SNP [dm6]	T	G	1.566e^-4	0.751	INTRON mld
2R	9140537	2R_9140537_SNP [dm3] 2R_13253032_SNP [dm6]	A	T	1.570e^-4	0.751	SYNONYMOUS_CODING CG4714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11363946	2L_11363946_SNP [dm3] 2L_11363946_SNP [dm6]	G	T	1.574e^-4	0.751	INTRON salr
3R	27089953	3R_27089953_SNP [dm3] 3R_31264231_SNP [dm6]	G	T	1.578e^-4	0.751	DOWNSTREAM CG18673 INTERGENIC
3L	5131999	3L_5131999_SNP [dm3] 3L_5138899_SNP [dm6]	A	G	1.585e^-4	0.751	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25930551	3R_25930551_SNP [dm3] 3R_30104829_SNP [dm6]	T	G	1.586e^-4	0.751	INTRON sima
3R	24140460	3R_24140460_SNP [dm3] 3R_28314738_SNP [dm6]	A	C	1.590e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11365005	2L_11365005_SNP [dm3] 2L_11365005_SNP [dm6]	G	A	1.594e^-4	0.751	UPSTREAM salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26055462	3R_26055462_SNP [dm3] 3R_30229740_SNP [dm6]	C	T	1.607e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	13787570	2L_13787570_SNP [dm3] 2L_13787570_SNP [dm6]	G	T	1.610e^-4	0.751	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10242214	3L_10242214_SNP [dm3] 3L_10249114_SNP [dm6]	T	G	1.612e^-4	0.751	UPSTREAM CR44540 INTERGENIC
X	9858685	X_9858685_SNP [dm3] X_9964652_SNP [dm6]	C	T	1.624e^-4	0.751	SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3R	25926123	3R_25926123_SNP [dm3] 3R_30100401_SNP [dm6]	A	T	1.631e^-4	0.751	INTRON sima	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16887305	3R_16887305_SNP [dm3] 3R_21061583_SNP [dm6]	T	G	1.636e^-4	0.751	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19382561	X_19382561_SNP [dm3] X_19488528_SNP [dm6]	G	A	1.640e^-4	0.751	SYNONYMOUS_CODING pcm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	10721509	2L_10721509_SNP [dm3] 2L_10721509_SNP [dm6]	T	A	1.641e^-4	0.751	INTERGENIC
X	12943965	X_12943965_SNP [dm3] X_13049932_SNP [dm6]	C	G	1.649e^-4	0.751	INTRON rad
2R	4624299	2R_4624299_SNP [dm3] 2R_8736794_SNP [dm6]	A	G	1.651e^-4	0.751	UPSTREAM CG42615 INTRON CG8740
2R	12348741	2R_12348741_SNP [dm3] 2R_16461236_SNP [dm6]	T	G	1.664e^-4	0.751	INTERGENIC
3L	17384729	3L_17384729_SNP [dm3] 3L_17391629_SNP [dm6]	G	T	1.666e^-4	0.751	INTERGENIC
2L	10721493	2L_10721493_DEL [dm3] 2L_10721493_DEL [dm6]	AC	A	1.670e^-4	0.751	INTERGENIC
2L	10723033	2L_10723033_SNP [dm3] 2L_10723033_SNP [dm6]	A	C	1.674e^-4	0.751	INTERGENIC
2R	12512556	2R_12512556_SNP [dm3] 2R_16625051_SNP [dm6]	G	T	1.675e^-4	0.751	DOWNSTREAM Alk & 1 other INTERGENIC
X	11044350	X_11044350_SNP [dm3] X_11150317_SNP [dm6]	G	A	1.675e^-4	0.751	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	11196161	3R_11196161_SNP [dm3] 3R_15370439_SNP [dm6]	C	G	1.678e^-4	0.751	UTR_3_PRIME CG6136 UPSTREAM CG14868 DOWNSTREAM CG6136
3R	16099543	3R_16099543_SNP [dm3] 3R_20273821_SNP [dm6]	A	C	1.680e^-4	0.751	INTRON cic
2R	13731299	2R_13731299_SNP [dm3] 2R_17843794_SNP [dm6]	A	T	1.683e^-4	0.751	UTR_5_PRIME olf186-F DOWNSTREAM grh	TF binding site mE1_TFBS_HSA
X	10835920	X_10835920_SNP [dm3] X_10941887_SNP [dm6]	C	T	1.688e^-4	0.751	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	20095358	2R_20095358_SNP [dm3] 2R_24207835_SNP [dm6]	A	C	1.691e^-4	0.751	UPSTREAM CG11406 INTRON CG11406
2L	5218596	2L_5218596_SNP [dm3] 2L_5218596_SNP [dm6]	C	T	1.691e^-4	0.751	SYNONYMOUS_CODING TpnC25D DOWNSTREAM tkv	TF binding site mE1_TFBS_sens
2R	19506156	2R_19506156_SNP [dm3] 2R_23618633_SNP [dm6]	G	C	1.694e^-4	0.751	INTERGENIC
X	3631199	X_3631199_SNP [dm3] X_3737166_SNP [dm6]	T	A	1.697e^-4	0.751	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12618799	3R_12618799_SNP [dm3] 3R_16793077_SNP [dm6]	A	G	1.698e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18955872	2R_18955872_SNP [dm3] 2R_23068349_SNP [dm6]	T	G	1.708e^-4	0.751	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
2R	18955881	2R_18955881_SNP [dm3] 2R_23068358_SNP [dm6]	A	C	1.708e^-4	0.751	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
2L	16949030	2L_16949030_SNP [dm3] 2L_16949030_SNP [dm6]	A	C	1.711e^-4	0.751	INTRON CR44393
3R	13060166	3R_13060166_SNP [dm3] 3R_17234444_SNP [dm6]	C	G	1.716e^-4	0.751	INTRON beat-IIb
3L	17384727	3L_17384727_SNP [dm3] 3L_17391627_SNP [dm6]	C	T	1.720e^-4	0.751	INTERGENIC
3L	6713204	3L_6713204_SNP [dm3] 3L_6720104_SNP [dm6]	T	G	1.721e^-4	0.751	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
2R	19485780	2R_19485780_SNP [dm3] 2R_23598257_SNP [dm6]	G	T	1.722e^-4	0.751	SYNONYMOUS_CODING apt
2L	13044027	2L_13044027_SNP [dm3] 2L_13044027_SNP [dm6]	T	G	1.726e^-4	0.751	INTRON CG9932
2L	13044038	2L_13044038_SNP [dm3] 2L_13044038_SNP [dm6]	A	G	1.726e^-4	0.751	INTRON CG9932
3R	24140652	3R_24140652_DEL [dm3] 3R_28314930_DEL [dm6]	ACAGGGA	A	1.737e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	10475868	2R_10475868_SNP [dm3] 2R_14588363_SNP [dm6]	A	G	1.746e^-4	0.752	DOWNSTREAM ttv INTERGENIC
3L	12524938	3L_12524938_SNP [dm3] 3L_12531838_SNP [dm6]	C	G	1.748e^-4	0.752	INTRON Tsf2	TF binding site mE1_TFBS_sens
2L	20433070	2L_20433070_SNP [dm3] 2L_20433070_SNP [dm6]	G	C	1.760e^-4	0.752	INTRON CG31688
3R	25935459	3R_25935459_SNP [dm3] 3R_30109737_SNP [dm6]	C	T	1.761e^-4	0.752	SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14775327	2L_14775327_SNP [dm3] 2L_14775327_SNP [dm6]	T	C	1.764e^-4	0.752	UPSTREAM CG4650 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10831085	2R_10831085_SNP [dm3] 2R_14943580_SNP [dm6]	G	T	1.764e^-4	0.752	DOWNSTREAM aPKC INTRON CG10257
2L	8976007	2L_8976007_SNP [dm3] 2L_8976007_SNP [dm6]	T	C	1.765e^-4	0.752	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	20110360	2R_20110360_SNP [dm3] 2R_24222837_SNP [dm6]	T	C	1.769e^-4	0.752	INTRON CG30419
2R	10831074	2R_10831074_SNP [dm3] 2R_14943569_SNP [dm6]	T	C	1.773e^-4	0.752	DOWNSTREAM aPKC INTRON CG10257
3R	17203843	3R_17203843_SNP [dm3] 3R_21378121_SNP [dm6]	C	T	1.774e^-4	0.752	UPSTREAM mod_mdg4_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	16981220	2R_16981220_SNP [dm3] 2R_21093715_SNP [dm6]	C	T	1.777e^-4	0.752	INTRON CG34396
2L	5959793	2L_5959793_SNP [dm3] 2L_5959793_SNP [dm6]	G	C	1.786e^-4	0.752	UTR_3_PRIME Vm26Aa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3807458	2R_3807458_INS [dm3] 2R_7919953_INS [dm6]	A	ATTGA	1.797e^-4	0.752	SPLICE_SITE_REGION Cul1 DOWNSTREAM Or43b INTRON Cul1	TF binding site mE1_TFBS_cad
3L	6100299	3L_6100299_SNP [dm3] 3L_6107199_SNP [dm6]	C	T	1.805e^-4	0.752	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	24060939	3R_24060939_SNP [dm3] 3R_28235217_SNP [dm6]	C	G	1.805e^-4	0.752	INTRON CG34354
3R	17203418	3R_17203418_SNP [dm3] 3R_21377696_SNP [dm6]	T	A	1.817e^-4	0.752	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24878127	3R_24878127_SNP [dm3] 3R_29052405_SNP [dm6]	C	G	1.822e^-4	0.752	UPSTREAM CG11842 DOWNSTREAM CG11841 INTERGENIC
2L	11065112	2L_11065112_SNP [dm3] 2L_11065112_SNP [dm6]	T	A	1.827e^-4	0.752	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4100599	2L_4100599_SNP [dm3] 2L_4100599_SNP [dm6]	C	T	1.833e^-4	0.752	INTRON ed
3L	11424137	3L_11424137_SNP [dm3] 3L_11431037_SNP [dm6]	C	T	1.838e^-4	0.752	INTERGENIC
3R	24081889	3R_24081889_SNP [dm3] 3R_28256167_SNP [dm6]	C	T	1.843e^-4	0.752	INTERGENIC
2L	19475068	2L_19475068_SNP [dm3] 2L_19475068_SNP [dm6]	T	C	1.846e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4098451	3L_4098451_SNP [dm3] 3L_4098451_SNP [dm6]	A	G	1.849e^-4	0.752	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	13060944	3R_13060944_SNP [dm3] 3R_17235222_SNP [dm6]	A	G	1.851e^-4	0.752	INTRON beat-IIb
2L	10721492	2L_10721492_SNP [dm3] 2L_10721492_SNP [dm6]	T	A	1.854e^-4	0.752	INTERGENIC
3R	26864412	3R_26864412_SNP [dm3] 3R_31038690_SNP [dm6]	A	C	1.854e^-4	0.752	UPSTREAM CanA1 INTERGENIC
3R	22072543	3R_22072543_SNP [dm3] 3R_26246821_SNP [dm6]	C	T	1.863e^-4	0.752	INTRON CR42745
2R	8712589	2R_8712589_SNP [dm3] 2R_12825084_SNP [dm6]	C	T	1.866e^-4	0.752	INTERGENIC
2R	15184429	2R_15184429_DEL [dm3] 2R_19296924_DEL [dm6]	AGCTGG	A	1.869e^-4	0.752	INTRON Tab2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5793325	3R_5793325_SNP [dm3] 3R_9967603_SNP [dm6]	G	A	1.870e^-4	0.752	INTRON Glut4EF
3R	13061100	3R_13061100_SNP [dm3] 3R_17235378_SNP [dm6]	T	C	1.871e^-4	0.752	INTRON beat-IIb
X	12943906	X_12943906_SNP [dm3] X_13049873_SNP [dm6]	C	T	1.872e^-4	0.752	INTRON rad
2R	18925373	2R_18925373_SNP [dm3] 2R_23037850_SNP [dm6]	G	C	1.872e^-4	0.752	INTRON twi & 1 other
3R	25803379	3R_25803379_DEL [dm3] 3R_29977657_DEL [dm6]	CGCATAATTTGAATTTCAT...	A	1.873e^-4	0.752	INTERGENIC
3L	15523866	3L_15523866_SNP [dm3] 3L_15530766_SNP [dm6]	T	G	1.877e^-4	0.752	NON_SYNONYMOUS_CODING CG43248 INTRON CG43248	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14231155	2R_14231155_SNP [dm3] 2R_18343650_SNP [dm6]	T	G	1.878e^-4	0.752	INTRON sbb
X	3767027	X_3767027_SNP [dm3] X_3872994_SNP [dm6]	C	T	1.880e^-4	0.752	INTRON CG2930	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	504462	2L_504462_SNP [dm3] 2L_504462_SNP [dm6]	A	C	1.890e^-4	0.752	INTRON ush
3R	25929985	3R_25929985_SNP [dm3] 3R_30104263_SNP [dm6]	C	A	1.895e^-4	0.752	NON_SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
2L	10721425	2L_10721425_INS [dm3] 2L_10721425_INS [dm6]	AAG	TTTA	1.907e^-4	0.752	INTERGENIC
2R	8736754	2R_8736754_INS [dm3] 2R_12849249_INS [dm6]	C	CATC	1.909e^-4	0.752	UPSTREAM CG30486 DOWNSTREAM CG17574 EXON CR45468
3L	955789	3L_955789_SNP [dm3] 3L_955789_SNP [dm6]	T	G	1.914e^-4	0.752	INTRON Glut1
2R	12177565	2R_12177565_SNP [dm3] 2R_16290060_SNP [dm6]	A	G	1.923e^-4	0.752	NON_SYNONYMOUS_CODING JhI-26 EXON CR43730
3L	1361287	3L_1361287_SNP [dm3] 3L_1361287_SNP [dm6]	T	C	1.929e^-4	0.752	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	6095992	3L_6095992_SNP [dm3] 3L_6102892_SNP [dm6]	C	T	1.934e^-4	0.752	INTRON Ets65A
2L	6302849	2L_6302849_SNP [dm3] 2L_6302849_SNP [dm6]	A	G	1.935e^-4	0.752	INTRON Ddr
2R	18926144	2R_18926144_SNP [dm3] 2R_23038621_SNP [dm6]	C	T	1.936e^-4	0.752	INTRON twi & 1 other
3R	1426613	3R_1426613_SNP [dm3] 3R_5600891_SNP [dm6]	C	T	1.936e^-4	0.752	UPSTREAM CG1427 & 1 other INTRON kra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	19616390	2R_19616390_SNP [dm3] 2R_23728867_SNP [dm6]	C	G	1.936e^-4	0.752	INTRON Sesn
3L	11451603	3L_11451603_SNP [dm3] 3L_11458503_SNP [dm6]	C	G	1.939e^-4	0.752	UTR_5_PRIME CG7551 UPSTREAM CG12289
3R	25648563	3R_25648563_SNP [dm3] 3R_29822841_SNP [dm6]	A	G	1.945e^-4	0.752	SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18985878	2R_18985878_SNP [dm3] 2R_23098355_SNP [dm6]	A	G	1.958e^-4	0.752	INTERGENIC
3L	7181639	3L_7181639_SNP [dm3] 3L_7188539_SNP [dm6]	T	G	1.962e^-4	0.752	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
X	3631196	X_3631196_SNP [dm3] X_3737163_SNP [dm6]	A	C	1.964e^-4	0.752	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4444460	2R_4444460_SNP [dm3] 2R_8556955_SNP [dm6]	A	C	1.966e^-4	0.752	INTERGENIC
2L	15537419	2L_15537419_SNP [dm3] 2L_15537419_SNP [dm6]	T	A	1.970e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10721390	2L_10721390_MNP [dm3] 2L_10721390_MNP [dm6]	GGG	AAA	1.970e^-4	0.752	INTERGENIC
3R	14719859	3R_14719859_SNP [dm3] 3R_18894137_SNP [dm6]	T	C	1.975e^-4	0.752	INTERGENIC
2R	12437417	2R_12437417_INS [dm3] 2R_16549912_INS [dm6]	T	TT	1.997e^-4	0.752	INTERGENIC
3R	22074959	3R_22074959_SNP [dm3] 3R_26249237_SNP [dm6]	A	T	1.999e^-4	0.752	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10831088	2R_10831088_SNP [dm3] 2R_14943583_SNP [dm6]	T	C	2.002e^-4	0.752	DOWNSTREAM aPKC INTRON CG10257
X	2826792	X_2826792_SNP [dm3] X_2932759_SNP [dm6]	A	T	2.006e^-4	0.752	DOWNSTREAM CG32793 INTRON kirre
3L	23042280	3L_23042280_SNP [dm3] 3L_23049180_SNP [dm6]	C	T	2.006e^-4	0.752	INTERGENIC	transposable element FlyBase
2L	2703208	2L_2703208_SNP [dm3] 2L_2703208_SNP [dm6]	G	T	2.007e^-4	0.752	INTRON CG31690
2R	1561513	2R_1561513_MNP [dm3] 2R_5674008_MNP [dm6]	CAAT	TTTA	2.009e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	14451871	2R_14451871_DEL [dm3] 2R_18564366_DEL [dm6]	GG	G	2.010e^-4	0.752	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19319604	2R_19319604_SNP [dm3] 2R_23432081_SNP [dm6]	C	A	2.012e^-4	0.752	UPSTREAM CG9815 INTRON CG9815
3L	17384821	3L_17384821_SNP [dm3] 3L_17391721_SNP [dm6]	G	T	2.024e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_kn
2L	4100600	2L_4100600_SNP [dm3] 2L_4100600_SNP [dm6]	A	C	2.028e^-4	0.752	INTRON ed
2L	20802236	2L_20802236_SNP [dm3] 2L_20802236_SNP [dm6]	T	G	2.031e^-4	0.752	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16580079	3R_16580079_SNP [dm3] 3R_20754357_SNP [dm6]	A	C	2.036e^-4	0.752	DOWNSTREAM CG42322 INTRON CG42322	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	12041639	2R_12041639_INS [dm3] 2R_16154134_INS [dm6]	A	AA	2.037e^-4	0.752	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7181855	3L_7181855_SNP [dm3] 3L_7188755_SNP [dm6]	A	C	2.043e^-4	0.752	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17176181	3R_17176181_SNP [dm3] 3R_21350459_SNP [dm6]	G	A	2.044e^-4	0.752	UPSTREAM CG16791 DOWNSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1695202	3L_1695202_SNP [dm3] 3L_1695202_SNP [dm6]	T	C	2.046e^-4	0.752	SYNONYMOUS_CODING CG12011 INTRON CG7991
X	13609200	X_13609200_SNP [dm3] X_13715167_SNP [dm6]	A	T	2.048e^-4	0.752	SYNONYMOUS_CODING NnaD DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
2R	1562034	2R_1562034_SNP [dm3] 2R_5674529_SNP [dm6]	G	T	2.050e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10475872	2R_10475872_SNP [dm3] 2R_14588367_SNP [dm6]	A	G	2.056e^-4	0.752	DOWNSTREAM ttv INTERGENIC
3L	7707401	3L_7707401_SNP [dm3] 3L_7714301_SNP [dm6]	T	A	2.062e^-4	0.752	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18980446	2R_18980446_SNP [dm3] 2R_23092923_SNP [dm6]	A	G	2.075e^-4	0.752	INTRON CG9876	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	14451883	2R_14451883_SNP [dm3] 2R_18564378_SNP [dm6]	A	C	2.085e^-4	0.752	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4218136	X_4218136_SNP [dm3] X_4324103_SNP [dm6]	C	A	2.086e^-4	0.752	INTRON norpA	TF binding site BDTNP1_TFBS_dl
3R	13053662	3R_13053662_SNP [dm3] 3R_17227940_SNP [dm6]	A	C	2.088e^-4	0.752	INTERGENIC
2R	12322445	2R_12322445_SNP [dm3] 2R_16434940_SNP [dm6]	T	C	2.092e^-4	0.752	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8178280	2L_8178280_SNP [dm3] 2L_8178280_SNP [dm6]	G	A	2.093e^-4	0.752	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6096074	3L_6096074_SNP [dm3] 3L_6102974_SNP [dm6]	C	T	2.101e^-4	0.752	INTRON Ets65A
2R	13074932	2R_13074932_SNP [dm3] 2R_17187427_SNP [dm6]	T	G	2.102e^-4	0.752	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12312564	3L_12312564_DEL [dm3] 3L_12319464_DEL [dm6]	TT	T	2.105e^-4	0.752	INTERGENIC
3R	18597139	3R_18597139_SNP [dm3] 3R_22771417_SNP [dm6]	A	T	2.106e^-4	0.752	NON_SYNONYMOUS_CODING CG43095 UPSTREAM CG43094 INTRON Usp12-46 & 1 other
3L	497636	3L_497636_SNP [dm3] 3L_497636_SNP [dm6]	G	C	2.106e^-4	0.752	INTRON klar
2R	17115469	2R_17115469_SNP [dm3] 2R_21227964_SNP [dm6]	G	A	2.114e^-4	0.752	INTRON ASPP
3L	4526500	3L_4526500_SNP [dm3] 3L_4526500_SNP [dm6]	G	A	2.118e^-4	0.752	INTRON Tie
3L	15130688	3L_15130688_SNP [dm3] 3L_15137588_SNP [dm6]	A	T	2.118e^-4	0.752	UPSTREAM CG12316 DOWNSTREAM Pdi INTERGENIC
3R	17176632	3R_17176632_INS [dm3] 3R_21350910_INS [dm6]	C	CTGTTAC	2.124e^-4	0.752	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12197170	2R_12197170_SNP [dm3] 2R_16309665_SNP [dm6]	A	G	2.125e^-4	0.752	SYNONYMOUS_CODING Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	7779167	X_7779167_SNP [dm3] X_7885134_SNP [dm6]	C	T	2.126e^-4	0.752	INTRON Ir7g
X	10848943	X_10848943_DEL [dm3] X_10954910_DEL [dm6]	TT	T	2.127e^-4	0.752	UTR_5_PRIME Myo10A INTRON Myo10A
3L	957381	3L_957381_INS [dm3] 3L_957381_INS [dm6]	G	GG	2.129e^-4	0.752	INTRON Glut1
2R	8736869	2R_8736869_SNP [dm3] 2R_12849364_SNP [dm6]	G	A	2.130e^-4	0.752	UTR_3_PRIME CG17574 UPSTREAM CG30486 DOWNSTREAM CR45468
3R	22556637	3R_22556637_SNP [dm3] 3R_26730915_SNP [dm6]	G	C	2.137e^-4	0.752	DOWNSTREAM CG14246 INTERGENIC
2R	8736707	2R_8736707_SNP [dm3] 2R_12849202_SNP [dm6]	G	A	2.149e^-4	0.752	UPSTREAM CG30486 DOWNSTREAM CG17574 EXON CR45468
3L	3902618	3L_3902618_SNP [dm3] 3L_3902618_SNP [dm6]	G	A	2.149e^-4	0.752	UTR_5_PRIME Ubi-p63E UPSTREAM Ubi-p63E & 1 other INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4116286	2L_4116286_SNP [dm3] 2L_4116286_SNP [dm6]	C	A	2.150e^-4	0.752	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14775380	2L_14775380_SNP [dm3] 2L_14775380_SNP [dm6]	T	C	2.155e^-4	0.752	UPSTREAM CG4650 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	1561511	2R_1561511_SNP [dm3] 2R_5674006_SNP [dm6]	C	T	2.172e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	13061695	3R_13061695_SNP [dm3] 3R_17235973_SNP [dm6]	G	T	2.173e^-4	0.752	INTRON beat-IIb
2R	20102584	2R_20102584_SNP [dm3] 2R_24215061_SNP [dm6]	C	G	2.181e^-4	0.752	UTR_3_PRIME CG30419	TF binding site mE1_TFBS_chinmo
3R	19520528	3R_19520528_SNP [dm3] 3R_23694806_SNP [dm6]	A	G	2.182e^-4	0.752	UPSTREAM CG10254 DOWNSTREAM CG10252 & 1 other INTRON CG10254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
2L	2703365	2L_2703365_SNP [dm3] 2L_2703365_SNP [dm6]	C	T	2.193e^-4	0.752	INTRON CG31690
2R	2821965	2R_2821965_SNP [dm3] 2R_6934460_SNP [dm6]	C	A	2.197e^-4	0.752	INTRON mim
3L	13429258	3L_13429258_INS [dm3] 3L_13436158_INS [dm6]	A	ACCAAAGTACAAAA...	2.197e^-4	0.752	UPSTREAM CG10713 INTRON CG10154
2R	4440168	2R_4440168_SNP [dm3] 2R_8552663_SNP [dm6]	A	G	2.200e^-4	0.752	UPSTREAM CG12780 INTERGENIC
2R	9176199	2R_9176199_SNP [dm3] 2R_13288694_SNP [dm6]	T	A	2.209e^-4	0.752	INTRON Dh31-R
2L	4571236	2L_4571236_SNP [dm3] 2L_4571236_SNP [dm6]	C	A	2.210e^-4	0.752	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13985017	3L_13985017_DEL [dm3] 3L_13991917_DEL [dm6]	TT	T	2.220e^-4	0.752	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22660325	3R_22660325_SNP [dm3] 3R_26834603_SNP [dm6]	T	C	2.225e^-4	0.752	INTRON Tl
2L	10721416	2L_10721416_SNP [dm3] 2L_10721416_SNP [dm6]	T	A	2.226e^-4	0.752	INTERGENIC
2L	1496604	2L_1496604_SNP [dm3] 2L_1496604_SNP [dm6]	G	A	2.241e^-4	0.752	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
3L	11839412	3L_11839412_SNP [dm3] 3L_11846312_SNP [dm6]	T	A	2.246e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6714957	3L_6714957_SNP [dm3] 3L_6721857_SNP [dm6]	T	C	2.249e^-4	0.752	INTERGENIC
3L	9815678	3L_9815678_SNP [dm3] 3L_9822578_SNP [dm6]	G	T	2.249e^-4	0.752	DOWNSTREAM Ilp5 INTRON CG43897
2R	19289873	2R_19289873_SNP [dm3] 2R_23402350_SNP [dm6]	G	A	2.262e^-4	0.752	UPSTREAM CG3520 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16877520	X_16877520_SNP [dm3] X_16983487_SNP [dm6]	A	G	2.263e^-4	0.752	INTRON CG45002
2R	19037719	2R_19037719_SNP [dm3] 2R_23150196_SNP [dm6]	G	C	2.267e^-4	0.752	INTERGENIC
X	6519192	X_6519192_SNP [dm3] X_6625159_SNP [dm6]	G	A	2.269e^-4	0.752	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	7262779	2R_7262779_SNP [dm3] 2R_11375274_SNP [dm6]	T	C	2.275e^-4	0.752	UTR_5_PRIME CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
3R	17774042	3R_17774042_INS [dm3] 3R_21948320_INS [dm6]	C	CT	2.289e^-4	0.752	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3118223	3L_3118223_SNP [dm3] 3L_3118223_SNP [dm6]	G	T	2.289e^-4	0.752	SYNONYMOUS_CODING prominin-like	TF binding site mE1_TFBS_sens
3R	17453643	3R_17453643_SNP [dm3] 3R_21627921_SNP [dm6]	A	T	2.291e^-4	0.752	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv
3R	6245191	3R_6245191_SNP [dm3] 3R_10419469_SNP [dm6]	G	C	2.294e^-4	0.752	INTERGENIC
3L	17384699	3L_17384699_SNP [dm3] 3L_17391599_SNP [dm6]	T	G	2.298e^-4	0.752	INTERGENIC
3R	25175311	3R_25175311_SNP [dm3] 3R_29349589_SNP [dm6]	A	C	2.305e^-4	0.752	INTERGENIC
2L	10961670	2L_10961670_SNP [dm3] 2L_10961670_SNP [dm6]	G	C	2.307e^-4	0.752	INTRON dpr2
2R	11897746	2R_11897746_SNP [dm3] 2R_16010241_SNP [dm6]	C	A	2.308e^-4	0.752	NON_SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19037883	2R_19037883_INS [dm3] 2R_23150360_INS [dm6]	T	TACTT	2.315e^-4	0.752	INTERGENIC
3L	1499134	3L_1499134_SNP [dm3] 3L_1499134_SNP [dm6]	A	G	2.321e^-4	0.752	SYNONYMOUS_CODING pUf68 UPSTREAM scaRNA:MeU2-48	TF binding site mE1_TFBS_cad
2L	768145	2L_768145_SNP [dm3] 2L_768145_SNP [dm6]	A	G	2.328e^-4	0.752	INTERGENIC
2R	1620809	2R_1620809_SNP [dm3] 2R_5733304_SNP [dm6]	T	G	2.330e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	9576008	2R_9576008_SNP [dm3] 2R_13688503_SNP [dm6]	G	T	2.332e^-4	0.752	INTRON fas
3L	5920465	3L_5920465_SNP [dm3] 3L_5927365_SNP [dm6]	G	T	2.335e^-4	0.752	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17059007	2R_17059007_SNP [dm3] 2R_21171502_SNP [dm6]	C	T	2.339e^-4	0.752	SYNONYMOUS_CODING Xpd UPSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10836767	X_10836767_SNP [dm3] X_10942734_SNP [dm6]	T	C	2.340e^-4	0.752	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	21126285	3L_21126285_SNP [dm3] 3L_21133185_SNP [dm6]	T	A	2.347e^-4	0.752	UTR_3_PRIME CG10566 DOWNSTREAM CG10565	TF binding site mE1_TFBS_cad
2L	6303005	2L_6303005_SNP [dm3] 2L_6303005_SNP [dm6]	T	C	2.363e^-4	0.752	INTRON Ddr
2R	18838252	2R_18838252_SNP [dm3] 2R_22950729_SNP [dm6]	G	A	2.366e^-4	0.752	DOWNSTREAM CR32835 INTERGENIC
3L	6095570	3L_6095570_SNP [dm3] 3L_6102470_SNP [dm6]	G	T	2.369e^-4	0.752	INTRON Ets65A
3L	5132092	3L_5132092_SNP [dm3] 3L_5138992_SNP [dm6]	C	G	2.377e^-4	0.752	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	17461245	3R_17461245_SNP [dm3] 3R_21635523_SNP [dm6]	A	G	2.385e^-4	0.752	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19490104	3R_19490104_SNP [dm3] 3R_23664382_SNP [dm6]	C	T	2.387e^-4	0.752	INTRON CG31145
X	15665035	X_15665035_SNP [dm3] X_15771002_SNP [dm6]	C	T	2.391e^-4	0.752	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2R	1615077	2R_1615077_SNP [dm3] 2R_5727572_SNP [dm6]	A	G	2.391e^-4	0.752	UPSTREAM ap INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	1539883	X_1539883_SNP [dm3] X_1645850_SNP [dm6]	G	A	2.394e^-4	0.752	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8704613	2L_8704613_SNP [dm3] 2L_8704613_SNP [dm6]	C	A	2.398e^-4	0.752	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992
2R	16394607	2R_16394607_SNP [dm3] 2R_20507102_SNP [dm6]	T	A	2.403e^-4	0.752	UPSTREAM CR44644 DOWNSTREAM CR44645 INTERGENIC
3R	24081611	3R_24081611_SNP [dm3] 3R_28255889_SNP [dm6]	G	T	2.403e^-4	0.752	INTERGENIC
2R	12340099	2R_12340099_SNP [dm3] 2R_16452594_SNP [dm6]	C	G	2.404e^-4	0.752	INTERGENIC
2L	6866250	2L_6866250_SNP [dm3] 2L_6866250_SNP [dm6]	T	C	2.405e^-4	0.752	INTRON Nha1
3L	17384964	3L_17384964_SNP [dm3] 3L_17391864_SNP [dm6]	A	C	2.407e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18752584	2R_18752584_SNP [dm3] 2R_22865061_SNP [dm6]	T	A	2.414e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9707752	2L_9707752_SNP [dm3] 2L_9707752_SNP [dm6]	G	A	2.422e^-4	0.752	INTRON pelo
2R	19614817	2R_19614817_SNP [dm3] 2R_23727294_SNP [dm6]	T	C	2.425e^-4	0.752	INTRON Sesn
2R	18864206	2R_18864206_SNP [dm3] 2R_22976683_SNP [dm6]	A	C	2.434e^-4	0.752	INTERGENIC
X	19572598	X_19572598_SNP [dm3] X_19678565_SNP [dm6]	C	A	2.436e^-4	0.752	NON_SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13159457	3L_13159457_SNP [dm3] 3L_13166357_SNP [dm6]	C	A	2.441e^-4	0.752	INTERGENIC
2L	1632978	2L_1632978_DEL [dm3] 2L_1632978_DEL [dm6]	AA	A	2.444e^-4	0.752	INTERGENIC
2R	16585602	2R_16585602_SNP [dm3] 2R_20698097_SNP [dm6]	A	T	2.444e^-4	0.752	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21030257	3R_21030257_SNP [dm3] 3R_25204535_SNP [dm6]	A	G	2.447e^-4	0.752	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	6936251	X_6936251_SNP [dm3] X_7042218_SNP [dm6]	G	A	2.448e^-4	0.752	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_hb
2L	3614397	2L_3614397_SNP [dm3] 2L_3614397_SNP [dm6]	A	G	2.462e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	19037887	2R_19037887_SNP [dm3] 2R_23150364_SNP [dm6]	C	T	2.465e^-4	0.752	INTERGENIC
3L	2096796	3L_2096796_SNP [dm3] 3L_2096796_SNP [dm6]	A	C	2.466e^-4	0.752	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13043964	2L_13043964_SNP [dm3] 2L_13043964_SNP [dm6]	C	T	2.474e^-4	0.752	INTRON CG9932
3L	17641100	3L_17641100_SNP [dm3] 3L_17648000_SNP [dm6]	G	A	2.474e^-4	0.752	UTR_3_PRIME Ndfip
X	3631401	X_3631401_SNP [dm3] X_3737368_SNP [dm6]	A	G	2.478e^-4	0.752	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9766383	2R_9766383_SNP [dm3] 2R_13878878_SNP [dm6]	A	G	2.488e^-4	0.752	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19499546	2R_19499546_SNP [dm3] 2R_23612023_SNP [dm6]	C	G	2.495e^-4	0.752	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13553705	2R_13553705_SNP [dm3] 2R_17666200_SNP [dm6]	T	C	2.499e^-4	0.752	INTRON eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	16975013	2L_16975013_SNP [dm3] 2L_16975013_SNP [dm6]	C	T	2.503e^-4	0.752	INTRON beat-IIIb
2R	15509448	2R_15509448_SNP [dm3] 2R_19621943_SNP [dm6]	G	A	2.505e^-4	0.752	INTRON sm
2L	1592997	2L_1592997_SNP [dm3] 2L_1592997_SNP [dm6]	C	T	2.513e^-4	0.752	INTRON haf
3R	23328896	3R_23328896_SNP [dm3] 3R_27503174_SNP [dm6]	T	C	2.526e^-4	0.752	UPSTREAM CG5402 INTERGENIC
2R	14826753	2R_14826753_SNP [dm3] 2R_18939248_SNP [dm6]	C	A	2.530e^-4	0.752	INTRON sano
2R	14826754	2R_14826754_SNP [dm3] 2R_18939249_SNP [dm6]	T	C	2.530e^-4	0.752	INTRON sano
3R	17187121	3R_17187121_SNP [dm3] 3R_21361399_SNP [dm6]	G	A	2.535e^-4	0.752	UTR_5_PRIME pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	4473440	2R_4473440_SNP [dm3] 2R_8585935_SNP [dm6]	T	C	2.535e^-4	0.752	INTERGENIC
2L	16949104	2L_16949104_SNP [dm3] 2L_16949104_SNP [dm6]	T	A	2.537e^-4	0.752	INTRON CR44393
2R	18274537	2R_18274537_SNP [dm3] 2R_22387032_SNP [dm6]	T	C	2.538e^-4	0.752	UPSTREAM CR44757 INTRON CG13506
2L	5269182	2L_5269182_SNP [dm3] 2L_5269182_SNP [dm6]	G	A	2.539e^-4	0.752	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3R	13061124	3R_13061124_DEL [dm3] 3R_17235402_DEL [dm6]	AT	A	2.543e^-4	0.752	INTRON beat-IIb
2L	10722794	2L_10722794_SNP [dm3] 2L_10722794_SNP [dm6]	A	G	2.544e^-4	0.752	INTERGENIC
3L	10242142	3L_10242142_SNP [dm3] 3L_10249042_SNP [dm6]	T	A	2.547e^-4	0.752	UPSTREAM CR44540 INTERGENIC
3L	1193561	3L_1193561_SNP [dm3] 3L_1193561_SNP [dm6]	T	C	2.553e^-4	0.752	UPSTREAM Trh INTERGENIC
2L	3961982	2L_3961982_SNP [dm3] 2L_3961982_SNP [dm6]	G	T	2.556e^-4	0.752	INTRON fred
2R	8712594	2R_8712594_SNP [dm3] 2R_12825089_SNP [dm6]	A	T	2.558e^-4	0.752	INTERGENIC
X	20953931	X_20953931_SNP [dm3] X_21082904_SNP [dm6]	A	T	2.558e^-4	0.752	DOWNSTREAM bves INTERGENIC
2R	8730215	2R_8730215_SNP [dm3] 2R_12842710_SNP [dm6]	T	G	2.560e^-4	0.752	UTR_5_PRIME Or49b UPSTREAM Cyp9h1
3L	17701285	3L_17701285_SNP [dm3] 3L_17708185_SNP [dm6]	A	G	2.564e^-4	0.752	INTRON Ccn
3L	17645087	3L_17645087_SNP [dm3] 3L_17651987_SNP [dm6]	A	G	2.576e^-4	0.752	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6103096	3L_6103096_SNP [dm3] 3L_6109996_SNP [dm6]	A	G	2.576e^-4	0.752	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	23023430	3L_23023430_SNP [dm3] 3L_23030330_SNP [dm6]	A	C	2.577e^-4	0.752	INTRON nrm
3L	1571977	3L_1571977_SNP [dm3] 3L_1571977_SNP [dm6]	C	T	2.579e^-4	0.752	UTR_5_PRIME CG12004 INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15664981	X_15664981_SNP [dm3] X_15770948_SNP [dm6]	T	C	2.583e^-4	0.752	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3L	17406679	3L_17406679_SNP [dm3] 3L_17413579_SNP [dm6]	T	C	2.586e^-4	0.752	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7779165	X_7779165_SNP [dm3] X_7885132_SNP [dm6]	A	C	2.588e^-4	0.752	INTRON Ir7g
3R	23509959	3R_23509959_SNP [dm3] 3R_27684237_SNP [dm6]	A	T	2.596e^-4	0.752	INTERGENIC
2L	20399956	2L_20399956_SNP [dm3] 2L_20399956_SNP [dm6]	A	G	2.597e^-4	0.752	UPSTREAM CG10947 INTRON CG10947
X	20840893	X_20840893_SNP [dm3] X_20969866_SNP [dm6]	G	A	2.599e^-4	0.752	INTERGENIC
2L	1592767	2L_1592767_SNP [dm3] 2L_1592767_SNP [dm6]	A	G	2.603e^-4	0.752	INTRON haf
3R	11751072	3R_11751072_SNP [dm3] 3R_15925350_SNP [dm6]	A	G	2.606e^-4	0.752	UPSTREAM CG34276 INTRON CG4221
2L	7363459	2L_7363459_SNP [dm3] 2L_7363459_SNP [dm6]	C	G	2.613e^-4	0.752	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	394628	2L_394628_SNP [dm3] 2L_394628_SNP [dm6]	T	C	2.614e^-4	0.752	INTERGENIC
2R	18864961	2R_18864961_INS [dm3] 2R_22977438_INS [dm6]	T	TAT	2.614e^-4	0.752	INTERGENIC
3R	18615938	3R_18615938_SNP [dm3] 3R_22790216_SNP [dm6]	G	C	2.618e^-4	0.752	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16386702	3R_16386702_DEL [dm3] 3R_20560980_DEL [dm6]	GG	G	2.618e^-4	0.752	UTR_5_PRIME CG5191 UPSTREAM CG15922 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6103169	3L_6103169_SNP [dm3] 3L_6110069_SNP [dm6]	A	T	2.618e^-4	0.752	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	7033438	3R_7033438_SNP [dm3] 3R_11207716_SNP [dm6]	C	T	2.624e^-4	0.752	SYNONYMOUS_CODING cu
2R	14877421	2R_14877421_SNP [dm3] 2R_18989916_SNP [dm6]	A	C	2.629e^-4	0.752	INTRON tn
X	3340904	X_3340904_SNP [dm3] X_3446871_SNP [dm6]	T	C	2.630e^-4	0.752	INTRON CR44999 & 1 other
2R	12033825	2R_12033825_SNP [dm3] 2R_16146320_SNP [dm6]	C	T	2.631e^-4	0.752	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
X	3988585	X_3988585_SNP [dm3] X_4094552_SNP [dm6]	T	A	2.635e^-4	0.752	INTERGENIC
3R	25932755	3R_25932755_SNP [dm3] 3R_30107033_SNP [dm6]	A	T	2.637e^-4	0.752	INTRON sima
3R	22594933	3R_22594933_DEL [dm3] 3R_26769211_DEL [dm6]	TTGTGT	C	2.640e^-4	0.752	EXON CR45563
2R	4473366	2R_4473366_SNP [dm3] 2R_8585861_SNP [dm6]	T	G	2.644e^-4	0.752	INTERGENIC
2L	5340865	2L_5340865_SNP [dm3] 2L_5340865_SNP [dm6]	G	C	2.650e^-4	0.752	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_chinmo
3R	20469337	3R_20469337_SNP [dm3] 3R_24643615_SNP [dm6]	C	T	2.653e^-4	0.752	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14781546	3R_14781546_SNP [dm3] 3R_18955824_SNP [dm6]	C	T	2.657e^-4	0.752	INTRON CG42613 & 1 other
3L	577316	3L_577316_SNP [dm3] 3L_577316_SNP [dm6]	C	A	2.660e^-4	0.752	UTR_3_PRIME hipk
3L	1213708	3L_1213708_SNP [dm3] 3L_1213708_SNP [dm6]	G	T	2.661e^-4	0.752	DOWNSTREAM LysE INTRON mwh
3L	14851381	3L_14851381_SNP [dm3] 3L_14858281_SNP [dm6]	G	C	2.662e^-4	0.752	INTRON CG17839
2L	8975636	2L_8975636_SNP [dm3] 2L_8975636_SNP [dm6]	A	G	2.662e^-4	0.752	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	19044965	3R_19044965_SNP [dm3] 3R_23219243_SNP [dm6]	T	G	2.662e^-4	0.752	UTR_5_PRIME cnc INTRON cnc
X	15896880	X_15896880_SNP [dm3] X_16002847_SNP [dm6]	T	A	2.666e^-4	0.752	INTRON vap
3L	20283520	3L_20283520_SNP [dm3] 3L_20290420_SNP [dm6]	C	A	2.671e^-4	0.752	DOWNSTREAM CR43890 INTRON gogo
X	6519179	X_6519179_SNP [dm3] X_6625146_SNP [dm6]	T	A	2.672e^-4	0.752	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	12340069	2R_12340069_SNP [dm3] 2R_16452564_SNP [dm6]	T	G	2.680e^-4	0.752	INTERGENIC
3L	7181663	3L_7181663_SNP [dm3] 3L_7188563_SNP [dm6]	T	A	2.682e^-4	0.752	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
3R	25927340	3R_25927340_SNP [dm3] 3R_30101618_SNP [dm6]	C	T	2.685e^-4	0.752	INTRON sima
2L	1496625	2L_1496625_SNP [dm3] 2L_1496625_SNP [dm6]	G	T	2.687e^-4	0.752	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
X	20018512	X_20018512_SNP [dm3] X_20124479_SNP [dm6]	A	G	2.691e^-4	0.752	INTRON CG34331
2R	2812034	2R_2812034_SNP [dm3] 2R_6924529_SNP [dm6]	C	G	2.693e^-4	0.752	DOWNSTREAM mim INTRON CG3358	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	577424	3L_577424_SNP [dm3] 3L_577424_SNP [dm6]	G	A	2.700e^-4	0.752	UTR_3_PRIME hipk
2L	8240582	2L_8240582_SNP [dm3] 2L_8240582_SNP [dm6]	A	T	2.708e^-4	0.754	STOP_GAINED Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17043466	2R_17043466_SNP [dm3] 2R_21155961_SNP [dm6]	A	G	2.728e^-4	0.757	INTRON CG30389	TF binding site mE1_TFBS_cad
3R	14369027	3R_14369027_SNP [dm3] 3R_18543305_SNP [dm6]	G	A	2.733e^-4	0.757	INTRON fru
2R	8712701	2R_8712701_SNP [dm3] 2R_12825196_SNP [dm6]	A	C	2.734e^-4	0.757	INTERGENIC
X	10846809	X_10846809_SNP [dm3] X_10952776_SNP [dm6]	T	G	2.735e^-4	0.757	UPSTREAM Rab9Fb INTRON Myo10A
3R	12618775	3R_12618775_SNP [dm3] 3R_16793053_SNP [dm6]	G	C	2.745e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14443415	3R_14443415_SNP [dm3] 3R_18617693_SNP [dm6]	G	A	2.749e^-4	0.757	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19678165	2L_19678165_SNP [dm3] 2L_19678165_SNP [dm6]	C	T	2.750e^-4	0.757	INTRON Lar
3L	23097164	3L_23097164_SNP [dm3] 3L_23104064_SNP [dm6]	C	G	2.763e^-4	0.76	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
2L	17517236	2L_17517236_SNP [dm3] 2L_17517236_SNP [dm6]	G	A	2.772e^-4	0.76	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20285024	X_20285024_SNP [dm3] X_20413997_SNP [dm6]	G	A	2.776e^-4	0.76	UPSTREAM CG15459 INTRON CG15458	regulatory region REDfly_CRMs
2L	14775321	2L_14775321_SNP [dm3] 2L_14775321_SNP [dm6]	T	G	2.777e^-4	0.76	UPSTREAM CG4650 INTERGENIC	TF binding site mE1_TFBS_Kr
X	13747356	X_13747356_SNP [dm3] X_13853323_SNP [dm6]	G	C	2.785e^-4	0.76	UTR_3_PRIME mamo
2L	7760128	2L_7760128_SNP [dm3] 2L_7760128_SNP [dm6]	G	A	2.794e^-4	0.76	INTRON CG7196
2R	13269937	2R_13269937_SNP [dm3] 2R_17382432_SNP [dm6]	C	T	2.794e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18926028	2R_18926028_SNP [dm3] 2R_23038505_SNP [dm6]	A	T	2.795e^-4	0.76	INTRON twi & 1 other
2L	1600732	2L_1600732_SNP [dm3] 2L_1600732_SNP [dm6]	C	G	2.797e^-4	0.76	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22659957	3R_22659957_DEL [dm3] 3R_26834235_DEL [dm6]	AA	A	2.802e^-4	0.76	INTRON Tl	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	17453666	3R_17453666_SNP [dm3] 3R_21627944_SNP [dm6]	G	A	2.804e^-4	0.76	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv
3R	10416907	3R_10416907_SNP [dm3] 3R_14591185_SNP [dm6]	G	A	2.811e^-4	0.76	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10721439	2L_10721439_SNP [dm3] 2L_10721439_SNP [dm6]	T	A	2.819e^-4	0.76	INTERGENIC
3L	6100281	3L_6100281_SNP [dm3] 3L_6107181_SNP [dm6]	T	A	2.827e^-4	0.76	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	11224343	2L_11224343_SNP [dm3] 2L_11224343_SNP [dm6]	G	C	2.838e^-4	0.76	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20348361	3L_20348361_DEL [dm3] 3L_20355261_DEL [dm6]	TTT	T	2.841e^-4	0.76	INTRON CG5618	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	15803865	2L_15803865_SNP [dm3] 2L_15803865_SNP [dm6]	A	C	2.842e^-4	0.76	INTERGENIC
3L	6298149	3L_6298149_SNP [dm3] 3L_6305049_SNP [dm6]	C	T	2.844e^-4	0.76	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3R	9939267	3R_9939267_SNP [dm3] 3R_14113545_SNP [dm6]	A	G	2.849e^-4	0.76	SYNONYMOUS_CODING Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26334226	3R_26334226_SNP [dm3] 3R_30508504_SNP [dm6]	A	T	2.856e^-4	0.76	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
X	4117408	X_4117408_SNP [dm3] X_4223375_SNP [dm6]	G	A	2.860e^-4	0.76	DOWNSTREAM CG15570 INTERGENIC
2L	8981959	2L_8981959_SNP [dm3] 2L_8981959_SNP [dm6]	A	G	2.860e^-4	0.76	DOWNSTREAM CG18662 INTRON CG13101
3R	18596482	3R_18596482_SNP [dm3] 3R_22770760_SNP [dm6]	T	A	2.865e^-4	0.76	NON_SYNONYMOUS_CODING CG43094 UPSTREAM CG43093 DOWNSTREAM CG43095 INTRON Usp12-46 & 1 other
3R	24030988	3R_24030988_SNP [dm3] 3R_28205266_SNP [dm6]	C	T	2.868e^-4	0.76	INTRON CG34354
2L	20802193	2L_20802193_SNP [dm3] 2L_20802193_SNP [dm6]	G	A	2.869e^-4	0.76	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18991257	3R_18991257_SNP [dm3] 3R_23165535_SNP [dm6]	T	C	2.871e^-4	0.76	INTERGENIC
X	8707163	X_8707163_SNP [dm3] X_8813130_SNP [dm6]	G	A	2.879e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23116381	3L_23116381_SNP [dm3] 3L_23123281_SNP [dm6]	C	T	2.880e^-4	0.76	INTERGENIC
2R	14826796	2R_14826796_SNP [dm3] 2R_18939291_SNP [dm6]	C	A	2.883e^-4	0.76	INTRON sano
3L	12901375	3L_12901375_SNP [dm3] 3L_12908275_SNP [dm6]	G	A	2.886e^-4	0.76	INTERGENIC
X	6936231	X_6936231_SNP [dm3] X_7042198_SNP [dm6]	A	T	2.898e^-4	0.76	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_hb
X	13132874	X_13132874_SNP [dm3] X_13238841_SNP [dm6]	G	A	2.900e^-4	0.76	INTRON mew	TF binding site BDTNP1_TFBS_dl
3L	23140864	3L_23140864_SNP [dm3] 3L_23147764_SNP [dm6]	C	T	2.900e^-4	0.76	UTR_3_PRIME CG32350
3R	17453335	3R_17453335_SNP [dm3] 3R_21627613_SNP [dm6]	G	C	2.903e^-4	0.76	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2216115	X_2216115_SNP [dm3] X_2322082_SNP [dm6]	A	G	2.903e^-4	0.76	INTRON phl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5676188	2L_5676188_SNP [dm3] 2L_5676188_SNP [dm6]	C	T	2.927e^-4	0.764	INTERGENIC
3L	1203120	3L_1203120_SNP [dm3] 3L_1203120_SNP [dm6]	A	T	2.929e^-4	0.764	UPSTREAM CG32335 DOWNSTREAM CG9119 INTRON mwh
2R	8539173	2R_8539173_SNP [dm3] 2R_12651668_SNP [dm6]	A	G	2.931e^-4	0.764	SYNONYMOUS_CODING CG8778
3L	1313558	3L_1313558_SNP [dm3] 3L_1313558_SNP [dm6]	T	C	2.938e^-4	0.764	UPSTREAM CG9153 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3R	17453597	3R_17453597_SNP [dm3] 3R_21627875_SNP [dm6]	A	G	2.939e^-4	0.764	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	18752587	2R_18752587_DEL [dm3] 2R_22865064_DEL [dm6]	AA	A	2.940e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	3205198	X_3205198_DEL [dm3] X_3311165_DEL [dm6]	AA	A	2.955e^-4	0.766	INTRON dnc
X	6033850	X_6033850_SNP [dm3] X_6139817_SNP [dm6]	A	T	2.980e^-4	0.772	INTRON Ca-alpha1T
3L	17706128	3L_17706128_SNP [dm3] 3L_17713028_SNP [dm6]	A	T	2.984e^-4	0.772	INTRON Ccn
3R	21094610	3R_21094610_SNP [dm3] 3R_25268888_SNP [dm6]	C	A	3.004e^-4	0.774	DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656
X	11682449	X_11682449_SNP [dm3] X_11788416_SNP [dm6]	T	G	3.009e^-4	0.774	UPSTREAM Karl INTRON Karl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25669258	3R_25669258_SNP [dm3] 3R_29843536_SNP [dm6]	G	A	3.013e^-4	0.774	INTRON Cad99C
2R	16981221	2R_16981221_SNP [dm3] 2R_21093716_SNP [dm6]	C	T	3.013e^-4	0.774	INTRON CG34396
3L	5140099	3L_5140099_SNP [dm3] 3L_5146999_SNP [dm6]	G	A	3.018e^-4	0.774	SYNONYMOUS_CODING Aats-ala-m UPSTREAM CG10671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_chinmo
2R	14529135	2R_14529135_SNP [dm3] 2R_18641630_SNP [dm6]	C	T	3.020e^-4	0.774	SPLICE_SITE_REGION SP2637 DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2L	503730	2L_503730_SNP [dm3] 2L_503730_SNP [dm6]	A	T	3.028e^-4	0.774	INTRON ush
2L	14359296	2L_14359296_SNP [dm3] 2L_14359296_SNP [dm6]	T	C	3.032e^-4	0.774	UTR_5_PRIME Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17185668	3R_17185668_SNP [dm3] 3R_21359946_SNP [dm6]	G	A	3.041e^-4	0.774	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16064082	2R_16064082_SNP [dm3] 2R_20176577_SNP [dm6]	T	C	3.046e^-4	0.774	INTERGENIC
X	19704526	X_19704526_SNP [dm3] X_19810493_SNP [dm6]	T	A	3.053e^-4	0.774	INTERGENIC
2L	8240583	2L_8240583_SNP [dm3] 2L_8240583_SNP [dm6]	T	A	3.056e^-4	0.774	NON_SYNONYMOUS_CODING Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	470447	2L_470447_SNP [dm3] 2L_470447_SNP [dm6]	A	G	3.060e^-4	0.774	INTRON CG4297
X	15589011	X_15589011_SNP [dm3] X_15694978_SNP [dm6]	T	C	3.061e^-4	0.774	DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26055456	3R_26055456_SNP [dm3] 3R_30229734_SNP [dm6]	G	A	3.061e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	23083809	3L_23083809_SNP [dm3] 3L_23090709_SNP [dm6]	A	G	3.064e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6100293	3L_6100293_SNP [dm3] 3L_6107193_SNP [dm6]	T	A	3.073e^-4	0.774	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	10840825	X_10840825_SNP [dm3] X_10946792_SNP [dm6]	A	G	3.076e^-4	0.774	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	1558138	2R_1558138_SNP [dm3] 2R_5670633_SNP [dm6]	T	G	3.086e^-4	0.774	DOWNSTREAM CG8245 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	401355	2L_401355_SNP [dm3] 2L_401355_SNP [dm6]	G	A	3.088e^-4	0.774	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
2R	4629302	2R_4629302_SNP [dm3] 2R_8741797_SNP [dm6]	G	C	3.093e^-4	0.774	INTRON CG8740
2R	4632557	2R_4632557_SNP [dm3] 2R_8745052_SNP [dm6]	G	A	3.093e^-4	0.774	UPSTREAM CR44277 INTRON CG8740
2R	17730511	2R_17730511_SNP [dm3] 2R_21843006_SNP [dm6]	G	T	3.094e^-4	0.774	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9154362	2R_9154362_SNP [dm3] 2R_13266857_SNP [dm6]	C	T	3.122e^-4	0.774	DOWNSTREAM CG42319 & 1 other INTERGENIC
2L	1630080	2L_1630080_SNP [dm3] 2L_1630080_SNP [dm6]	T	G	3.124e^-4	0.774	INTERGENIC
2L	1630814	2L_1630814_SNP [dm3] 2L_1630814_SNP [dm6]	C	G	3.124e^-4	0.774	INTERGENIC
2L	1631074	2L_1631074_SNP [dm3] 2L_1631074_SNP [dm6]	T	C	3.124e^-4	0.774	INTERGENIC
X	15665016	X_15665016_SNP [dm3] X_15770983_SNP [dm6]	A	G	3.128e^-4	0.774	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3R	22072535	3R_22072535_SNP [dm3] 3R_26246813_SNP [dm6]	A	T	3.151e^-4	0.774	INTRON CR42745
X	7733567	X_7733567_SNP [dm3] X_7839534_SNP [dm6]	G	A	3.153e^-4	0.774	INTRON CG1402
2R	18866484	2R_18866484_SNP [dm3] 2R_22978961_SNP [dm6]	G	T	3.154e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16092027	3R_16092027_SNP [dm3] 3R_20266305_SNP [dm6]	T	A	3.158e^-4	0.774	INTRON cic
2L	16399486	2L_16399486_SNP [dm3] 2L_16399486_SNP [dm6]	A	T	3.159e^-4	0.774	DOWNSTREAM CG5888 INTERGENIC
2R	3686433	2R_3686433_SNP [dm3] 2R_7798928_SNP [dm6]	A	G	3.162e^-4	0.774	INTRON mus205	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6302850	2L_6302850_SNP [dm3] 2L_6302850_SNP [dm6]	A	G	3.166e^-4	0.774	INTRON Ddr
3R	15110336	3R_15110336_SNP [dm3] 3R_19284614_SNP [dm6]	A	G	3.167e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11624859	2L_11624859_SNP [dm3] 2L_11624859_SNP [dm6]	A	T	3.167e^-4	0.774	UTR_3_PRIME kek2
3L	6096119	3L_6096119_SNP [dm3] 3L_6103019_SNP [dm6]	T	C	3.174e^-4	0.774	INTRON Ets65A
2R	13547791	2R_13547791_SNP [dm3] 2R_17660286_SNP [dm6]	A	C	3.180e^-4	0.774	INTRON CCHa1-R
2R	14537863	2R_14537863_SNP [dm3] 2R_18650358_SNP [dm6]	G	A	3.185e^-4	0.774	INTRON SP2637
2R	18925957	2R_18925957_SNP [dm3] 2R_23038434_SNP [dm6]	T	A	3.189e^-4	0.774	INTRON twi & 1 other
2R	9152901	2R_9152901_SNP [dm3] 2R_13265396_SNP [dm6]	G	T	3.194e^-4	0.774	SPLICE_SITE_REGION CG42319 INTRON CG42319
2L	3215294	2L_3215294_SNP [dm3] 2L_3215294_SNP [dm6]	G	A	3.196e^-4	0.774	INTERGENIC
2R	18663403	2R_18663403_SNP [dm3] 2R_22775898_SNP [dm6]	C	T	3.198e^-4	0.774	INTRON CG42260
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	3.200e^-4	0.774	INTRON CG9932
3L	1455513	3L_1455513_SNP [dm3] 3L_1455513_SNP [dm6]	T	G	3.201e^-4	0.774	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14609196	2R_14609196_SNP [dm3] 2R_18721691_SNP [dm6]	G	C	3.210e^-4	0.774	INTRON Hs3st-A
3R	25809962	3R_25809962_SNP [dm3] 3R_29984240_SNP [dm6]	G	A	3.211e^-4	0.774	INTRON CG7896
2R	4630479	2R_4630479_SNP [dm3] 2R_8742974_SNP [dm6]	A	T	3.212e^-4	0.774	INTRON CG8740
2R	18742646	2R_18742646_SNP [dm3] 2R_22855123_SNP [dm6]	G	C	3.221e^-4	0.774	DOWNSTREAM inaD INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15213330	2R_15213330_SNP [dm3] 2R_19325825_SNP [dm6]	G	A	3.221e^-4	0.774	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25175644	3R_25175644_SNP [dm3] 3R_29349922_SNP [dm6]	G	A	3.222e^-4	0.774	INTERGENIC
2R	2868031	2R_2868031_DEL [dm3] 2R_6980526_DEL [dm6]	TCGCATCGCCCGCCCGGCGG...	T	3.224e^-4	0.774	DOWNSTREAM CR44170 & 1 other INTRON vimar EXON CR44171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1561586	2R_1561586_SNP [dm3] 2R_5674081_SNP [dm6]	A	G	3.228e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	1313634	3L_1313634_SNP [dm3] 3L_1313634_SNP [dm6]	A	G	3.229e^-4	0.774	UPSTREAM CG9153 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2R	4448500	2R_4448500_SNP [dm3] 2R_8560995_SNP [dm6]	G	T	3.230e^-4	0.774	INTERGENIC
X	1162699	X_1162699_SNP [dm3] X_1268666_SNP [dm6]	A	G	3.236e^-4	0.774	INTRON Atf3
X	6688240	X_6688240_SNP [dm3] X_6794207_SNP [dm6]	G	A	3.238e^-4	0.774	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19576461	X_19576461_SNP [dm3] X_19682428_SNP [dm6]	G	A	3.242e^-4	0.774	SYNONYMOUS_CODING dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15317370	3R_15317370_SNP [dm3] 3R_19491648_SNP [dm6]	G	C	3.244e^-4	0.774	UPSTREAM CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	13205700	X_13205700_SNP [dm3] X_13311667_SNP [dm6]	C	A	3.244e^-4	0.774	INTRON IP3K2
3L	17022148	3L_17022148_SNP [dm3] 3L_17029048_SNP [dm6]	G	T	3.256e^-4	0.775	SYNONYMOUS_CODING CG7730 DOWNSTREAM Ilp8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6898663	2L_6898663_SNP [dm3] 2L_6898663_SNP [dm6]	A	C	3.257e^-4	0.775	INTRON Nlg2
3R	25348121	3R_25348121_SNP [dm3] 3R_29522399_SNP [dm6]	T	C	3.290e^-4	0.777	INTERGENIC
3R	13061228	3R_13061228_SNP [dm3] 3R_17235506_SNP [dm6]	G	T	3.291e^-4	0.777	INTRON beat-IIb
2L	20256031	2L_20256031_SNP [dm3] 2L_20256031_SNP [dm6]	T	A	3.296e^-4	0.777	UTR_3_PRIME CG17571	TF binding site mE1_TFBS_chinmo
2L	11065091	2L_11065091_SNP [dm3] 2L_11065091_SNP [dm6]	G	A	3.303e^-4	0.777	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3526729	2R_3526729_SNP [dm3] 2R_7639224_SNP [dm6]	A	G	3.313e^-4	0.777	UTR_5_PRIME CG43340 INTRON CG43340	TF binding site mE1_TFBS_chinmo
2L	9549443	2L_9549443_SNP [dm3] 2L_9549443_SNP [dm6]	A	C	3.313e^-4	0.777	UTR_3_PRIME jp
3R	26275017	3R_26275017_SNP [dm3] 3R_30449295_SNP [dm6]	C	A	3.314e^-4	0.777	INTRON aralar1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8155818	3L_8155818_SNP [dm3] 3L_8162718_SNP [dm6]	T	G	3.328e^-4	0.777	INTRON CG13675
2R	18278125	2R_18278125_SNP [dm3] 2R_22390620_SNP [dm6]	T	C	3.328e^-4	0.777	INTRON CG13506
3L	11465511	3L_11465511_SNP [dm3] 3L_11472411_SNP [dm6]	G	A	3.330e^-4	0.777	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	8712114	2L_8712114_SNP [dm3] 2L_8712114_SNP [dm6]	A	G	3.334e^-4	0.777	INTRON raw
3R	11198009	3R_11198009_SNP [dm3] 3R_15372287_SNP [dm6]	C	T	3.336e^-4	0.777	UPSTREAM CG6136 INTRON Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	20349239	3L_20349239_SNP [dm3] 3L_20356139_SNP [dm6]	C	T	3.336e^-4	0.777	SYNONYMOUS_CODING CG5618 UPSTREAM kin17	TF binding site mE1_TFBS_sens
3R	6430722	3R_6430722_SNP [dm3] 3R_10605000_SNP [dm6]	C	T	3.341e^-4	0.777	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23023435	3L_23023435_SNP [dm3] 3L_23030335_SNP [dm6]	T	A	3.345e^-4	0.777	INTRON nrm
3R	5893702	3R_5893702_SNP [dm3] 3R_10067980_SNP [dm6]	T	C	3.353e^-4	0.777	SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
3L	6989861	3L_6989861_SNP [dm3] 3L_6996761_SNP [dm6]	A	G	3.353e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8239286	3L_8239286_SNP [dm3] 3L_8246186_SNP [dm6]	A	T	3.359e^-4	0.777	INTRON Dscam4
3L	23116550	3L_23116550_SNP [dm3] 3L_23123450_SNP [dm6]	G	A	3.360e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22721489	3R_22721489_SNP [dm3] 3R_26895767_SNP [dm6]	T	C	3.364e^-4	0.777	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	3616503	X_3616503_SNP [dm3] X_3722470_SNP [dm6]	G	T	3.364e^-4	0.777	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6103112	3L_6103112_SNP [dm3] 3L_6110012_SNP [dm6]	A	G	3.364e^-4	0.777	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	1561154	2R_1561154_SNP [dm3] 2R_5673649_SNP [dm6]	A	G	3.365e^-4	0.777	DOWNSTREAM kune INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1561707	2R_1561707_SNP [dm3] 2R_5674202_SNP [dm6]	T	G	3.365e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
2L	5592216	2L_5592216_SNP [dm3] 2L_5592216_SNP [dm6]	C	G	3.370e^-4	0.777	INTERGENIC
2R	13493808	2R_13493808_SNP [dm3] 2R_17606303_SNP [dm6]	C	T	3.386e^-4	0.778	NON_SYNONYMOUS_CODING CG10936
3L	10746323	3L_10746323_SNP [dm3] 3L_10753223_SNP [dm6]	T	C	3.389e^-4	0.778	INTERGENIC
2R	15549851	2R_15549851_SNP [dm3] 2R_19662346_SNP [dm6]	C	T	3.392e^-4	0.778	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	4145574	2L_4145574_SNP [dm3] 2L_4145574_SNP [dm6]	G	A	3.393e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11869099	2R_11869099_SNP [dm3] 2R_15981594_SNP [dm6]	G	A	3.400e^-4	0.778	NON_SYNONYMOUS_CODING Strn-Mlck
3R	8065629	3R_8065629_SNP [dm3] 3R_12239907_SNP [dm6]	T	C	3.404e^-4	0.778	UPSTREAM Cyp313a3 EXON CR44036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	3.406e^-4	0.778	INTRON cu
3R	19563022	3R_19563022_SNP [dm3] 3R_23737300_SNP [dm6]	C	T	3.406e^-4	0.778	INTRON Hmgcr
3R	9337117	3R_9337117_SNP [dm3] 3R_13511395_SNP [dm6]	C	T	3.415e^-4	0.779	INTERGENIC
3R	10016826	3R_10016826_SNP [dm3] 3R_14191104_SNP [dm6]	A	G	3.440e^-4	0.783	INTRON Dop1R1
3L	6716829	3L_6716829_SNP [dm3] 3L_6723729_SNP [dm6]	C	G	3.450e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs
2L	8982322	2L_8982322_SNP [dm3] 2L_8982322_SNP [dm6]	G	A	3.450e^-4	0.783	DOWNSTREAM CG18662 INTRON CG13101
3L	15239174	3L_15239174_SNP [dm3] 3L_15246074_SNP [dm6]	C	A	3.452e^-4	0.783	INTERGENIC
3R	20647762	3R_20647762_SNP [dm3] 3R_24822040_SNP [dm6]	C	T	3.454e^-4	0.783	SYNONYMOUS_CODING Saf-B UTR_3_PRIME Saf-B DOWNSTREAM niki	TF binding site mE1_TFBS_cad
X	16133193	X_16133193_SNP [dm3] X_16239160_SNP [dm6]	G	A	3.467e^-4	0.784	INTERGENIC
2R	12638377	2R_12638377_SNP [dm3] 2R_16750872_SNP [dm6]	T	C	3.471e^-4	0.784	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2R	5219254	2R_5219254_SNP [dm3] 2R_9331749_SNP [dm6]	C	T	3.475e^-4	0.784	INTRON CG13954 & 1 other
3L	11422505	3L_11422505_SNP [dm3] 3L_11429405_SNP [dm6]	A	G	3.477e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4444393	2R_4444393_SNP [dm3] 2R_8556888_SNP [dm6]	G	A	3.479e^-4	0.784	INTERGENIC
2R	14276119	2R_14276119_SNP [dm3] 2R_18388614_SNP [dm6]	T	A	3.501e^-4	0.785	UTR_3_PRIME IM3 UPSTREAM CG16836 DOWNSTREAM IM3
2L	10912805	2L_10912805_SNP [dm3] 2L_10912805_SNP [dm6]	A	T	3.505e^-4	0.785	INTERGENIC
3R	16492881	3R_16492881_SNP [dm3] 3R_20667159_SNP [dm6]	A	C	3.520e^-4	0.785	INTERGENIC
3L	6104134	3L_6104134_SNP [dm3] 3L_6111034_SNP [dm6]	C	G	3.533e^-4	0.785	UPSTREAM Ets65A INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23097157	3L_23097157_SNP [dm3] 3L_23104057_SNP [dm6]	C	T	3.534e^-4	0.785	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
3L	12524924	3L_12524924_SNP [dm3] 3L_12531824_SNP [dm6]	A	G	3.537e^-4	0.785	INTRON Tsf2	TF binding site mE1_TFBS_sens
2R	18449718	2R_18449718_SNP [dm3] 2R_22562213_SNP [dm6]	T	A	3.541e^-4	0.785	UPSTREAM CG11362 & 1 other DOWNSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17504627	3R_17504627_SNP [dm3] 3R_21678905_SNP [dm6]	A	T	3.543e^-4	0.785	INTRON CG31176
2R	17734975	2R_17734975_DEL [dm3] 2R_21847470_DEL [dm6]	CC	T	3.543e^-4	0.785	DOWNSTREAM tRNA:CR30406 INTERGENIC
2L	8982321	2L_8982321_SNP [dm3] 2L_8982321_SNP [dm6]	A	G	3.546e^-4	0.785	DOWNSTREAM CG18662 INTRON CG13101
3L	12509924	3L_12509924_SNP [dm3] 3L_12516824_SNP [dm6]	A	G	3.553e^-4	0.785	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_chinmo
3R	16389320	3R_16389320_SNP [dm3] 3R_20563598_SNP [dm6]	C	T	3.560e^-4	0.785	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13053707	3R_13053707_SNP [dm3] 3R_17227985_SNP [dm6]	A	C	3.561e^-4	0.785	INTERGENIC
3L	4920965	3L_4920965_SNP [dm3] 3L_4920965_SNP [dm6]	A	G	3.562e^-4	0.785	DOWNSTREAM Rh50 INTERGENIC
2R	14278599	2R_14278599_SNP [dm3] 2R_18391094_SNP [dm6]	T	C	3.569e^-4	0.785	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	17461282	3R_17461282_SNP [dm3] 3R_21635560_SNP [dm6]	A	T	3.572e^-4	0.785	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6033836	X_6033836_SNP [dm3] X_6139803_SNP [dm6]	A	G	3.577e^-4	0.785	INTRON Ca-alpha1T
X	20951477	X_20951477_SNP [dm3] X_21080450_SNP [dm6]	A	G	3.584e^-4	0.785	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2122035	3L_2122035_SNP [dm3] 3L_2122035_SNP [dm6]	A	G	3.589e^-4	0.785	DOWNSTREAM zormin INTRON zormin	TF binding site BDTNP1_TFBS_twi
2R	1559139	2R_1559139_SNP [dm3] 2R_5671634_SNP [dm6]	G	A	3.590e^-4	0.785	UPSTREAM kune INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	17176597	3R_17176597_SNP [dm3] 3R_21350875_SNP [dm6]	G	T	3.624e^-4	0.785	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9733884	2R_9733884_SNP [dm3] 2R_13846379_SNP [dm6]	A	T	3.628e^-4	0.785	UPSTREAM CG30484 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14828737	2R_14828737_SNP [dm3] 2R_18941232_SNP [dm6]	G	C	3.634e^-4	0.785	INTRON sano
3L	13429831	3L_13429831_SNP [dm3] 3L_13436731_SNP [dm6]	A	T	3.634e^-4	0.785	INTRON CG10154
2R	2812033	2R_2812033_SNP [dm3] 2R_6924528_SNP [dm6]	A	C	3.643e^-4	0.785	DOWNSTREAM mim INTRON CG3358	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24064314	3R_24064314_SNP [dm3] 3R_28238592_SNP [dm6]	T	C	3.646e^-4	0.785	UTR_3_PRIME CG34354 UPSTREAM CR45041
2R	1561529	2R_1561529_SNP [dm3] 2R_5674024_SNP [dm6]	A	T	3.654e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	20777643	3R_20777643_INS [dm3] 3R_24951921_INS [dm6]	T	TTACACT	3.655e^-4	0.785	INTERGENIC
3R	17875219	3R_17875219_SNP [dm3] 3R_22049497_SNP [dm6]	A	C	3.660e^-4	0.785	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6348735	2R_6348735_INS [dm3] 2R_10461230_INS [dm6]	G	GATTGAGTCAG...	3.664e^-4	0.785	SPLICE_SITE_REGION Galphao INTRON Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17203655	3R_17203655_SNP [dm3] 3R_21377933_SNP [dm6]	A	T	3.667e^-4	0.785	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	10490276	X_10490276_SNP [dm3] X_10596243_SNP [dm6]	C	T	3.672e^-4	0.785	UTR_5_PRIME CG2124 UPSTREAM Hmr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17378260	2R_17378260_INS [dm3] 2R_21490755_INS [dm6]	T	TGTTGTTTATTT...	3.676e^-4	0.785	INTRON Fkbp14
2R	8733325	2R_8733325_SNP [dm3] 2R_12845820_SNP [dm6]	T	C	3.685e^-4	0.785	SYNONYMOUS_CODING CG17575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25803424	3R_25803424_SNP [dm3] 3R_29977702_SNP [dm6]	A	C	3.686e^-4	0.785	INTERGENIC
3R	16997546	3R_16997546_SNP [dm3] 3R_21171824_SNP [dm6]	A	G	3.690e^-4	0.785	INTRON SNF4Agamma
3R	17186786	3R_17186786_SNP [dm3] 3R_21361064_SNP [dm6]	A	G	3.692e^-4	0.785	SYNONYMOUS_CODING pre-mod_mdg4_-T UTR_5_PRIME pre-mod_mdg4_-Z INTRON mod_mdg4_
2L	5592417	2L_5592417_SNP [dm3] 2L_5592417_SNP [dm6]	T	C	3.702e^-4	0.785	INTERGENIC
2R	9148565	2R_9148565_SNP [dm3] 2R_13261060_SNP [dm6]	A	T	3.713e^-4	0.785	INTRON CG42319
3L	1754721	3L_1754721_SNP [dm3] 3L_1754721_SNP [dm6]	G	C	3.720e^-4	0.785	UTR_5_PRIME Cht2 INTRON Cht2
3L	14857065	3L_14857065_SNP [dm3] 3L_14863965_SNP [dm6]	A	T	3.727e^-4	0.785	INTRON CG17839
2L	1089373	2L_1089373_SNP [dm3] 2L_1089373_SNP [dm6]	A	G	3.728e^-4	0.785	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20409312	2R_20409312_SNP [dm3] 2R_24521789_SNP [dm6]	T	C	3.731e^-4	0.785	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8621660	X_8621660_SNP [dm3] X_8727627_SNP [dm6]	T	A	3.742e^-4	0.785	INTERGENIC
3L	11922598	3L_11922598_INS [dm3] 3L_11929498_INS [dm6]	G	GAG	3.743e^-4	0.785	INTRON CG44837 & 1 other
2L	4571235	2L_4571235_SNP [dm3] 2L_4571235_SNP [dm6]	C	A	3.746e^-4	0.785	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14828785	2R_14828785_SNP [dm3] 2R_18941280_SNP [dm6]	T	C	3.756e^-4	0.785	INTRON sano
3L	22348691	3L_22348691_SNP [dm3] 3L_22355591_SNP [dm6]	G	C	3.760e^-4	0.785	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15817656	3R_15817656_SNP [dm3] 3R_19991934_SNP [dm6]	C	A	3.769e^-4	0.785	INTRON Hs6st
X	9797913	X_9797913_SNP [dm3] X_9903880_SNP [dm6]	C	A	3.773e^-4	0.785	INTERGENIC
2R	18165599	2R_18165599_SNP [dm3] 2R_22278094_SNP [dm6]	T	C	3.781e^-4	0.785	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26291193	3R_26291193_SNP [dm3] 3R_30465471_SNP [dm6]	C	T	3.785e^-4	0.785	SYNONYMOUS_CODING CDase UPSTREAM PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	3.786e^-4	0.785	INTRON CG42747
2R	7778636	2R_7778636_SNP [dm3] 2R_11891131_SNP [dm6]	C	A	3.791e^-4	0.785	UPSTREAM Ef1alpha48D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16125029	2R_16125029_SNP [dm3] 2R_20237524_SNP [dm6]	G	T	3.807e^-4	0.785	DOWNSTREAM CG13869 INTRON CG11099
3L	4921049	3L_4921049_SNP [dm3] 3L_4921049_SNP [dm6]	A	G	3.817e^-4	0.785	DOWNSTREAM Rh50 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12571460	2R_12571460_SNP [dm3] 2R_16683955_SNP [dm6]	T	A	3.817e^-4	0.785	UTR_5_PRIME CG30463 INTRON CG30463
3R	11340670	3R_11340670_SNP [dm3] 3R_15514948_SNP [dm6]	A	G	3.818e^-4	0.785	INTERGENIC
2L	8251668	2L_8251668_SNP [dm3] 2L_8251668_SNP [dm6]	T	A	3.821e^-4	0.785	INTRON CG8086
2R	9733885	2R_9733885_SNP [dm3] 2R_13846380_SNP [dm6]	C	T	3.825e^-4	0.785	UPSTREAM CG30484 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18666022	2R_18666022_SNP [dm3] 2R_22778517_SNP [dm6]	C	T	3.827e^-4	0.785	INTRON CG42260
2L	6570140	2L_6570140_SNP [dm3] 2L_6570140_SNP [dm6]	G	T	3.839e^-4	0.785	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9924734	2R_9924734_SNP [dm3] 2R_14037229_SNP [dm6]	T	C	3.840e^-4	0.785	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7181657	3L_7181657_SNP [dm3] 3L_7188557_SNP [dm6]	C	A	3.841e^-4	0.785	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
2R	8990489	2R_8990489_INS [dm3] 2R_13102984_INS [dm6]	T	TT	3.851e^-4	0.785	UPSTREAM CG44341 INTERGENIC
2R	16067514	2R_16067514_SNP [dm3] 2R_20180009_SNP [dm6]	T	C	3.851e^-4	0.785	INTERGENIC
3L	5213333	3L_5213333_SNP [dm3] 3L_5220233_SNP [dm6]	G	T	3.853e^-4	0.785	INTRON shep
2R	15565968	2R_15565968_SNP [dm3] 2R_19678463_SNP [dm6]	A	G	3.854e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6728538	X_6728538_SNP [dm3] X_6834505_SNP [dm6]	C	T	3.855e^-4	0.785	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12524931	3L_12524931_INS [dm3] 3L_12531831_INS [dm6]	A	AA	3.860e^-4	0.785	INTRON Tsf2	TF binding site mE1_TFBS_sens
2R	19619740	2R_19619740_SNP [dm3] 2R_23732217_SNP [dm6]	C	T	3.860e^-4	0.785	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	17019993	3L_17019993_DEL [dm3] 3L_17026893_DEL [dm6]	TGATAGACTCACAACT...	T	3.860e^-4	0.785	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
X	8131116	X_8131116_SNP [dm3] X_8237083_SNP [dm6]	T	A	3.863e^-4	0.785	SYNONYMOUS_CODING sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1227785	3L_1227785_SNP [dm3] 3L_1227785_SNP [dm6]	T	A	3.865e^-4	0.785	NON_SYNONYMOUS_CODING LysS INTRON mwh
3R	17774022	3R_17774022_SNP [dm3] 3R_21948300_SNP [dm6]	C	T	3.871e^-4	0.785	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22658966	3R_22658966_SNP [dm3] 3R_26833244_SNP [dm6]	A	T	3.875e^-4	0.785	INTRON Tl
3L	23089225	3L_23089225_DEL [dm3] 3L_23096125_DEL [dm6]	GGAATGGTCTAGTCTTTTAA...	G	3.886e^-4	0.785	UPSTREAM RpL10 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18926134	2R_18926134_SNP [dm3] 2R_23038611_SNP [dm6]	A	C	3.894e^-4	0.785	INTRON twi & 1 other
3R	17457461	3R_17457461_SNP [dm3] 3R_21631739_SNP [dm6]	G	A	3.897e^-4	0.785	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17457471	3R_17457471_SNP [dm3] 3R_21631749_SNP [dm6]	T	C	3.897e^-4	0.785	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6397837	3L_6397837_SNP [dm3] 3L_6404737_SNP [dm6]	A	G	3.903e^-4	0.785	INTRON CG42747
2L	6901540	2L_6901540_SNP [dm3] 2L_6901540_SNP [dm6]	G	C	3.904e^-4	0.785	UPSTREAM mir-932 INTRON Nlg2
3L	11189581	3L_11189581_SNP [dm3] 3L_11196481_SNP [dm6]	G	T	3.907e^-4	0.785	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5133485	3L_5133485_SNP [dm3] 3L_5140385_SNP [dm6]	C	T	3.911e^-4	0.785	UTR_3_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5255668	2L_5255668_SNP [dm3] 2L_5255668_SNP [dm6]	A	G	3.911e^-4	0.785	INTRON tkv	TF binding site mE1_TFBS_cad
3R	11198002	3R_11198002_SNP [dm3] 3R_15372280_SNP [dm6]	C	T	3.914e^-4	0.785	UPSTREAM CG6136 INTRON Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14363137	3L_14363137_SNP [dm3] 3L_14370037_SNP [dm6]	A	C	3.917e^-4	0.785	UPSTREAM CG13481 INTERGENIC
X	3988580	X_3988580_SNP [dm3] X_4094547_SNP [dm6]	C	G	3.917e^-4	0.785	INTERGENIC
2R	18765639	2R_18765639_SNP [dm3] 2R_22878116_SNP [dm6]	C	T	3.920e^-4	0.785	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
3R	27132179	3R_27132179_SNP [dm3] 3R_31306457_SNP [dm6]	T	A	3.921e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	355471	2L_355471_SNP [dm3] 2L_355471_SNP [dm6]	G	A	3.925e^-4	0.785	UTR_3_PRIME Plc21C UPSTREAM CR45367 DOWNSTREAM Ent1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11182443	2L_11182443_SNP [dm3] 2L_11182443_SNP [dm6]	C	A	3.937e^-4	0.785	INTRON Ca-beta
2L	10102511	2L_10102511_SNP [dm3] 2L_10102511_SNP [dm6]	C	A	3.941e^-4	0.785	INTRON CG44153 & 1 other
2L	4198203	2L_4198203_INS [dm3] 2L_4198203_INS [dm6]	A	AA	3.941e^-4	0.785	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12098741	3R_12098741_SNP [dm3] 3R_16273019_SNP [dm6]	G	A	3.942e^-4	0.785	UTR_5_PRIME gish UPSTREAM Mat89Ba INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15899227	2R_15899227_SNP [dm3] 2R_20011722_SNP [dm6]	T	C	3.943e^-4	0.785	INTERGENIC
3R	25929978	3R_25929978_SNP [dm3] 3R_30104256_SNP [dm6]	A	G	3.943e^-4	0.785	SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
2R	13601187	2R_13601187_SNP [dm3] 2R_17713682_SNP [dm6]	T	C	3.953e^-4	0.785	INTRON CG6424
3L	14065567	3L_14065567_SNP [dm3] 3L_14072467_SNP [dm6]	C	G	3.954e^-4	0.785	SYNONYMOUS_CODING Pex1 DOWNSTREAM CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9173778	2R_9173778_SNP [dm3] 2R_13286273_SNP [dm6]	C	A	3.958e^-4	0.785	INTRON Dh31-R
3R	24082778	3R_24082778_SNP [dm3] 3R_28257056_SNP [dm6]	C	A	3.961e^-4	0.785	INTERGENIC
2R	9177918	2R_9177918_SNP [dm3] 2R_13290413_SNP [dm6]	A	G	3.963e^-4	0.785	INTRON Dh31-R
3L	11143948	3L_11143948_SNP [dm3] 3L_11150848_SNP [dm6]	T	A	3.963e^-4	0.785	UPSTREAM CG6216 INTRON CG32082
2R	15594338	2R_15594338_SNP [dm3] 2R_19706833_SNP [dm6]	A	T	3.966e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_cad
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	3.969e^-4	0.785	INTRON mew	TF binding site BDTNP1_TFBS_dl
3L	1522700	3L_1522700_SNP [dm3] 3L_1522700_SNP [dm6]	G	C	3.970e^-4	0.785	DOWNSTREAM CG12090 INTRON Psa	TF binding site mE1_TFBS_cad
2R	4863773	2R_4863773_DEL [dm3] 2R_8976268_DEL [dm6]	TATCTCCGACGGATCCTTAC...	T	3.971e^-4	0.785	INTRON CG8213
3R	24081777	3R_24081777_SNP [dm3] 3R_28256055_SNP [dm6]	C	T	3.973e^-4	0.785	INTERGENIC
2R	10435059	2R_10435059_SNP [dm3] 2R_14547554_SNP [dm6]	G	T	3.974e^-4	0.785	INTRON ttv
2R	18182284	2R_18182284_SNP [dm3] 2R_22294779_SNP [dm6]	C	T	3.975e^-4	0.785	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
3R	25932321	3R_25932321_SNP [dm3] 3R_30106599_SNP [dm6]	G	C	3.981e^-4	0.785	INTRON sima
2L	8980588	2L_8980588_SNP [dm3] 2L_8980588_SNP [dm6]	A	T	3.985e^-4	0.785	UPSTREAM CG18662 INTRON CG13101
3L	4185504	3L_4185504_SNP [dm3] 3L_4185504_SNP [dm6]	C	A	3.988e^-4	0.785	UPSTREAM Teh3 DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3R	11751392	3R_11751392_SNP [dm3] 3R_15925670_SNP [dm6]	T	C	3.993e^-4	0.785	UPSTREAM CG34276 INTRON CG4221 & 1 other
X	20153929	X_20153929_SNP [dm3] X_20282902_SNP [dm6]	T	C	4.001e^-4	0.785	INTERGENIC
3R	2878783	3R_2878783_SNP [dm3] 3R_7053061_SNP [dm6]	A	T	4.012e^-4	0.785	INTRON Sodh-1
2L	17137994	2L_17137994_SNP [dm3] 2L_17137994_SNP [dm6]	G	A	4.013e^-4	0.785	INTRON beat-IIIa & 1 other
2L	4195508	2L_4195508_SNP [dm3] 2L_4195508_SNP [dm6]	T	C	4.013e^-4	0.785	INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	25931116	3R_25931116_SNP [dm3] 3R_30105394_SNP [dm6]	T	C	4.017e^-4	0.785	INTRON sima
3R	20306158	3R_20306158_SNP [dm3] 3R_24480436_SNP [dm6]	A	T	4.020e^-4	0.785	INTERGENIC
3R	4044866	3R_4044866_SNP [dm3] 3R_8219144_SNP [dm6]	A	G	4.020e^-4	0.785	NON_SYNONYMOUS_CODING CG7800
3R	4049280	3R_4049280_SNP [dm3] 3R_8223558_SNP [dm6]	G	T	4.020e^-4	0.785	INTERGENIC
3R	22072554	3R_22072554_SNP [dm3] 3R_26246832_SNP [dm6]	A	G	4.023e^-4	0.785	INTRON CR42745
2L	9445837	2L_9445837_SNP [dm3] 2L_9445837_SNP [dm6]	A	C	4.024e^-4	0.785	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	4.025e^-4	0.785	INTRON CngA
3R	19621455	3R_19621455_SNP [dm3] 3R_23795733_SNP [dm6]	T	C	4.027e^-4	0.785	INTRON mbc
2R	9148561	2R_9148561_INS [dm3] 2R_13261056_INS [dm6]	A	AA	4.028e^-4	0.785	INTRON CG42319
2R	8579196	2R_8579196_SNP [dm3] 2R_12691691_SNP [dm6]	T	A	4.037e^-4	0.785	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a	TF binding site mE1_TFBS_sens
2R	4435975	2R_4435975_SNP [dm3] 2R_8548470_SNP [dm6]	A	G	4.042e^-4	0.785	INTERGENIC
3L	23136228	3L_23136228_DEL [dm3] 3L_23143128_DEL [dm6]	ATGTGTTGGCAATGCGTGTA...	A	4.042e^-4	0.785	INTERGENIC	transposable element FlyBase
3R	23509649	3R_23509649_SNP [dm3] 3R_27683927_SNP [dm6]	G	A	4.044e^-4	0.785	INTERGENIC
2L	8240633	2L_8240633_SNP [dm3] 2L_8240633_SNP [dm6]	A	C	4.055e^-4	0.785	UPSTREAM Pvr INTRON Spn28F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15088499	3R_15088499_INS [dm3] 3R_19262777_INS [dm6]	C	CCAACTTTTGAC...	4.058e^-4	0.785	INTERGENIC
2L	20475335	2L_20475335_SNP [dm3] 2L_20475335_SNP [dm6]	A	C	4.058e^-4	0.785	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2R	19730181	2R_19730181_SNP [dm3] 2R_23842658_SNP [dm6]	T	A	4.079e^-4	0.785	SYNONYMOUS_CODING shu DOWNSTREAM Snap29	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16962827	3L_16962827_SNP [dm3] 3L_16969727_SNP [dm6]	A	C	4.087e^-4	0.785	UPSTREAM Exn INTERGENIC
2R	9589146	2R_9589146_SNP [dm3] 2R_13701641_SNP [dm6]	C	T	4.090e^-4	0.785	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18752637	2R_18752637_MNP [dm3] 2R_22865114_MNP [dm6]	TGA	ATT	4.096e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25723495	3R_25723495_SNP [dm3] 3R_29897773_SNP [dm6]	C	A	4.098e^-4	0.785	UTR_3_PRIME CG31038 INTRON CG31038
2L	5255685	2L_5255685_SNP [dm3] 2L_5255685_SNP [dm6]	T	A	4.113e^-4	0.785	INTRON tkv	TF binding site mE1_TFBS_cad
2L	20802590	2L_20802590_DEL [dm3] 2L_20802590_DEL [dm6]	TT	T	4.121e^-4	0.785	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1932479	3L_1932479_SNP [dm3] 3L_1932479_SNP [dm6]	A	T	4.130e^-4	0.785	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	918883	2L_918883_SNP [dm3] 2L_918883_SNP [dm6]	A	C	4.132e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15537392	2L_15537392_SNP [dm3] 2L_15537392_SNP [dm6]	T	G	4.137e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19506047	3R_19506047_SNP [dm3] 3R_23680325_SNP [dm6]	G	A	4.137e^-4	0.785	SYNONYMOUS_CODING eIF-3p66 DOWNSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22590782	3L_22590782_SNP [dm3] 3L_22597682_SNP [dm6]	T	A	4.145e^-4	0.785	INTRON CG14459
3R	19492330	3R_19492330_SNP [dm3] 3R_23666608_SNP [dm6]	C	T	4.146e^-4	0.785	INTRON CG31145	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	12437312	2R_12437312_SNP [dm3] 2R_16549807_SNP [dm6]	T	A	4.153e^-4	0.785	INTERGENIC
3R	11197535	3R_11197535_SNP [dm3] 3R_15371813_SNP [dm6]	T	C	4.154e^-4	0.785	START_LOST CG6136 UPSTREAM Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18568352	2R_18568352_SNP [dm3] 2R_22680847_SNP [dm6]	C	T	4.155e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	16821987	3L_16821987_SNP [dm3] 3L_16828887_SNP [dm6]	A	G	4.159e^-4	0.785	START_GAINED CG13024 UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16153554	2R_16153554_SNP [dm3] 2R_20266049_SNP [dm6]	C	T	4.162e^-4	0.785	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18631591	2L_18631591_SNP [dm3] 2L_18631591_SNP [dm6]	A	G	4.162e^-4	0.785	INTRON MESR3
2L	16782048	2L_16782048_SNP [dm3] 2L_16782048_SNP [dm6]	A	T	4.181e^-4	0.785	INTRON Mhc	TF binding site mE1_TFBS_chinmo
X	3912826	X_3912826_SNP [dm3] X_4018793_SNP [dm6]	A	C	4.182e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	24026372	3R_24026372_SNP [dm3] 3R_28200650_SNP [dm6]	T	A	4.182e^-4	0.785	INTRON CG34354
2R	17159243	2R_17159243_SNP [dm3] 2R_21271738_SNP [dm6]	G	A	4.191e^-4	0.785	INTRON Rgk3
2R	19532899	2R_19532899_SNP [dm3] 2R_23645376_SNP [dm6]	G	T	4.193e^-4	0.785	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14373469	3R_14373469_DEL [dm3] 3R_18547747_DEL [dm6]	AAA	C	4.195e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14046238	3L_14046238_SNP [dm3] 3L_14053138_SNP [dm6]	A	G	4.196e^-4	0.785	UPSTREAM CG43986 & 2 others DOWNSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	6286363	2R_6286363_SNP [dm3] 2R_10398858_SNP [dm6]	C	A	4.201e^-4	0.785	INTRON CG42732
3L	11880641	3L_11880641_SNP [dm3] 3L_11887541_SNP [dm6]	C	A	4.205e^-4	0.785	UTR_3_PRIME CG5897 INTRON CG44837
2L	1305442	2L_1305442_SNP [dm3] 2L_1305442_SNP [dm6]	T	C	4.209e^-4	0.785	INTERGENIC
2R	17731488	2R_17731488_SNP [dm3] 2R_21843983_SNP [dm6]	G	A	4.210e^-4	0.785	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15213232	3R_15213232_SNP [dm3] 3R_19387510_SNP [dm6]	T	A	4.210e^-4	0.785	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
3L	1200245	3L_1200245_SNP [dm3] 3L_1200245_SNP [dm6]	T	C	4.210e^-4	0.785	UPSTREAM mwh DOWNSTREAM Aplip1 INTERGENIC
2R	13545576	2R_13545576_SNP [dm3] 2R_17658071_SNP [dm6]	A	G	4.216e^-4	0.785	INTRON CCHa1-R
3R	13061233	3R_13061233_SNP [dm3] 3R_17235511_SNP [dm6]	G	C	4.218e^-4	0.785	INTRON beat-IIb

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.038e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.05734

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.4002	0.0672
In_3R_P	9.1422	0.0103

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2140 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	5433045	3L_5433045_SNP [dm3] 3L_5439945_SNP [dm6]	G	A	1.637e^-7	0.072	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
X	8552865	X_8552865_SNP [dm3] X_8658832_SNP [dm6]	T	A	1.892e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552784	X_8552784_SNP [dm3] X_8658751_SNP [dm6]	A	T	2.762e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552725	X_8552725_SNP [dm3] X_8658692_SNP [dm6]	T	C	2.860e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552872	X_8552872_SNP [dm3] X_8658839_SNP [dm6]	T	G	3.218e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	18381047	2L_18381047_SNP [dm3] 2L_18381047_SNP [dm6]	G	A	3.307e^-7	0.072	INTRON Fas3
X	8552892	X_8552892_SNP [dm3] X_8658859_SNP [dm6]	G	A	3.821e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552866	X_8552866_DEL [dm3] X_8658833_DEL [dm6]	AAG	A	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552877	X_8552877_DEL [dm3] X_8658844_DEL [dm6]	GAAGT	G	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552886	X_8552886_MNP [dm3] X_8658853_MNP [dm6]	GAG	AGA	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552782	X_8552782_SNP [dm3] X_8658749_SNP [dm6]	A	T	4.221e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552775	X_8552775_SNP [dm3] X_8658742_SNP [dm6]	C	A	4.582e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	5.623e^-7	0.081	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552862	X_8552862_SNP [dm3] X_8658829_SNP [dm6]	G	T	1.398e^-6	0.154	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12279333	3R_12279333_SNP [dm3] 3R_16453611_SNP [dm6]	G	T	1.426e^-6	0.154	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279648	3R_12279648_SNP [dm3] 3R_16453926_SNP [dm6]	A	T	1.426e^-6	0.154	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12276081	3R_12276081_SNP [dm3] 3R_16450359_SNP [dm6]	G	T	1.477e^-6	0.154	INTRON Pak3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279507	3R_12279507_SNP [dm3] 3R_16453785_SNP [dm6]	G	C	1.512e^-6	0.154	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279649	3R_12279649_SNP [dm3] 3R_16453927_SNP [dm6]	A	T	1.564e^-6	0.154	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15559469	2L_15559469_SNP [dm3] 2L_15559469_SNP [dm6]	A	G	2.627e^-6	0.246	INTRON kek3
2L	15557665	2L_15557665_SNP [dm3] 2L_15557665_SNP [dm6]	C	T	3.653e^-6	0.326	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18623067	2L_18623067_SNP [dm3] 2L_18623067_SNP [dm6]	A	G	4.130e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	18623115	2L_18623115_SNP [dm3] 2L_18623115_SNP [dm6]	G	C	4.379e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	18623601	2L_18623601_SNP [dm3] 2L_18623601_SNP [dm6]	T	G	4.380e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16812446	X_16812446_SNP [dm3] X_16918413_SNP [dm6]	C	G	4.743e^-6	0.356	INTRON CG4928
2L	18623342	2L_18623342_SNP [dm3] 2L_18623342_SNP [dm6]	C	T	5.981e^-6	0.398	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
X	14469384	X_14469384_SNP [dm3] X_14575351_SNP [dm6]	G	A	6.019e^-6	0.398	INTERGENIC
3R	21097050	3R_21097050_SNP [dm3] 3R_25271328_SNP [dm6]	T	A	6.097e^-6	0.398	UPSTREAM CG11891 INTRON CG11889 & 1 other
3R	16168961	3R_16168961_SNP [dm3] 3R_20343239_SNP [dm6]	C	A	6.150e^-6	0.398	INTRON Ir92a
3R	12270408	3R_12270408_SNP [dm3] 3R_16444686_SNP [dm6]	A	T	6.469e^-6	0.404	NON_SYNONYMOUS_CODING CG14882 DOWNSTREAM Pak3
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	7.059e^-6	0.427	DOWNSTREAM aPKC INTRON CG10257
3R	2616217	3R_2616217_SNP [dm3] 3R_6790495_SNP [dm6]	C	T	7.958e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	15710745	X_15710745_SNP [dm3] X_15816712_SNP [dm6]	T	G	7.961e^-6	0.432	INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21111449	X_21111449_SNP [dm3] X_21240422_SNP [dm6]	T	C	8.035e^-6	0.432	INTRON CG32521
3L	11884715	3L_11884715_SNP [dm3] 3L_11891615_SNP [dm6]	A	T	8.056e^-6	0.432	INTRON CG44837
3L	11537771	3L_11537771_SNP [dm3] 3L_11544671_SNP [dm6]	T	C	9.550e^-6	0.498	INTRON Mob2
3R	12271487	3R_12271487_SNP [dm3] 3R_16445765_SNP [dm6]	C	G	1.081e^-5	0.545	UTR_3_PRIME Pak3 DOWNSTREAM CG14882 & 1 other
2L	15557797	2L_15557797_SNP [dm3] 2L_15557797_SNP [dm6]	G	A	1.108e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17080807	3R_17080807_SNP [dm3] 3R_21255085_SNP [dm6]	G	T	1.153e^-5	0.545	INTRON ETHR
2L	14852125	2L_14852125_SNP [dm3] 2L_14852125_SNP [dm6]	C	A	1.207e^-5	0.545	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14851961	2L_14851961_INS [dm3] 2L_14851961_INS [dm6]	A	AATGC	1.209e^-5	0.545	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15557729	2L_15557729_SNP [dm3] 2L_15557729_SNP [dm6]	C	T	1.223e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15557649	2L_15557649_DEL [dm3] 2L_15557649_DEL [dm6]	GAAC	CGT	1.258e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5125487	2R_5125487_SNP [dm3] 2R_9237982_SNP [dm6]	T	C	1.307e^-5	0.545	SYNONYMOUS_CODING Cyp4p2 INTRON hig
3R	11126463	3R_11126463_INS [dm3] 3R_15300741_INS [dm6]	C	CC	1.308e^-5	0.545	SPLICE_SITE_REGION Tm1 INTRON Tm1
3R	7142674	3R_7142674_SNP [dm3] 3R_11316952_SNP [dm6]	G	C	1.389e^-5	0.558	INTERGENIC
X	14475330	X_14475330_SNP [dm3] X_14581297_SNP [dm6]	A	G	1.399e^-5	0.558	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
2R	16677959	2R_16677959_SNP [dm3] 2R_20790454_SNP [dm6]	T	A	1.500e^-5	0.565	UTR_3_PRIME CG43677 UPSTREAM CG43667
2R	10825235	2R_10825235_SNP [dm3] 2R_14937730_SNP [dm6]	C	G	1.523e^-5	0.565	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2L	15885372	2L_15885372_SNP [dm3] 2L_15885372_SNP [dm6]	T	C	1.525e^-5	0.565	INTERGENIC
2L	11833549	2L_11833549_DEL [dm3] 2L_11833549_DEL [dm6]	ATTTAAATAA	A	1.537e^-5	0.565	UPSTREAM CG45011 INTRON Pde1c
2L	1595022	2L_1595022_INS [dm3] 2L_1595022_INS [dm6]	T	TA	1.608e^-5	0.57	UTR_3_PRIME CG31935 INTRON haf
2L	906539	2L_906539_SNP [dm3] 2L_906539_SNP [dm6]	G	A	1.649e^-5	0.57	INTERGENIC
3L	12706512	3L_12706512_SNP [dm3] 3L_12713412_SNP [dm6]	G	A	1.684e^-5	0.57	INTERGENIC
2R	10825241	2R_10825241_SNP [dm3] 2R_14937736_SNP [dm6]	C	T	1.711e^-5	0.57	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
X	12249519	X_12249519_SNP [dm3] X_12355486_SNP [dm6]	A	G	1.751e^-5	0.57	INTERGENIC
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	1.766e^-5	0.57	INTRON Tgi
2L	15557740	2L_15557740_SNP [dm3] 2L_15557740_SNP [dm6]	G	A	1.774e^-5	0.57	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15557782	2L_15557782_SNP [dm3] 2L_15557782_SNP [dm6]	G	A	1.816e^-5	0.57	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15861923	3L_15861923_SNP [dm3] 3L_15868823_SNP [dm6]	T	C	1.823e^-5	0.57	INTRON pHCl
2L	14852123	2L_14852123_SNP [dm3] 2L_14852123_SNP [dm6]	A	C	1.981e^-5	0.589	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22098264	X_22098264_SNP [dm3] X_22696428_SNP [dm6]	C	T	2.013e^-5	0.589	INTRON CR44997
2L	15559445	2L_15559445_SNP [dm3] 2L_15559445_SNP [dm6]	C	T	2.110e^-5	0.589	INTRON kek3
3L	12706525	3L_12706525_SNP [dm3] 3L_12713425_SNP [dm6]	T	A	2.110e^-5	0.589	INTERGENIC
3R	12098034	3R_12098034_SNP [dm3] 3R_16272312_SNP [dm6]	A	G	2.201e^-5	0.589	NON_SYNONYMOUS_CODING Mat89Ba UPSTREAM gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15306660	3R_15306660_INS [dm3] 3R_19480938_INS [dm6]	T	TTT	2.239e^-5	0.589	INTRON Dys	TF binding site mE1_TFBS_sens
2R	17864226	2R_17864226_SNP [dm3] 2R_21976721_SNP [dm6]	C	T	2.246e^-5	0.589	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
2L	11008900	2L_11008900_SNP [dm3] 2L_11008900_SNP [dm6]	T	C	2.274e^-5	0.589	DOWNSTREAM Art8 INTRON Nup154
X	11917686	X_11917686_SNP [dm3] X_12023653_SNP [dm6]	C	T	2.305e^-5	0.589	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
2L	14852137	2L_14852137_SNP [dm3] 2L_14852137_SNP [dm6]	A	C	2.336e^-5	0.589	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	11917685	X_11917685_SNP [dm3] X_12023652_SNP [dm6]	A	T	2.346e^-5	0.589	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
2L	19792506	2L_19792506_SNP [dm3] 2L_19792506_SNP [dm6]	C	A	2.355e^-5	0.589	UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43 INTRON CG10466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15397811	3R_15397811_SNP [dm3] 3R_19572089_SNP [dm6]	T	A	2.386e^-5	0.589	INTRON Dys
3R	15333675	3R_15333675_SNP [dm3] 3R_19507953_SNP [dm6]	G	T	2.424e^-5	0.589	INTRON Dys
3L	7301002	3L_7301002_SNP [dm3] 3L_7307902_SNP [dm6]	C	A	2.427e^-5	0.589	INTRON unc-13-4A
3R	13963473	3R_13963473_SNP [dm3] 3R_18137751_SNP [dm6]	A	G	2.448e^-5	0.589	INTERGENIC
3R	13250995	3R_13250995_SNP [dm3] 3R_17425273_SNP [dm6]	C	A	2.449e^-5	0.589	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	12706516	3L_12706516_SNP [dm3] 3L_12713416_SNP [dm6]	T	G	2.449e^-5	0.589	INTERGENIC
3L	11538220	3L_11538220_SNP [dm3] 3L_11545120_SNP [dm6]	G	A	2.598e^-5	0.617	INTRON Mob2
3L	13228633	3L_13228633_SNP [dm3] 3L_13235533_SNP [dm6]	T	A	2.646e^-5	0.62	INTRON caps
2R	16679143	2R_16679143_SNP [dm3] 2R_20791638_SNP [dm6]	C	G	2.763e^-5	0.635	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
3R	2622675	3R_2622675_SNP [dm3] 3R_6796953_SNP [dm6]	C	T	2.797e^-5	0.635	INTRON Dfd	TF binding site mE1_TFBS_cnc
2L	14852138	2L_14852138_SNP [dm3] 2L_14852138_SNP [dm6]	C	A	2.870e^-5	0.635	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14852148	2L_14852148_SNP [dm3] 2L_14852148_SNP [dm6]	T	A	2.872e^-5	0.635	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10835193	2L_10835193_SNP [dm3] 2L_10835193_SNP [dm6]	A	G	2.876e^-5	0.635	INTRON Nos
3R	2916101	3R_2916101_SNP [dm3] 3R_7090379_SNP [dm6]	C	T	2.916e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1 transposable element FlyBase
2L	14852126	2L_14852126_SNP [dm3] 2L_14852126_SNP [dm6]	G	T	2.983e^-5	0.639	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14592284	3R_14592284_SNP [dm3] 3R_18766562_SNP [dm6]	G	A	3.000e^-5	0.639	INTRON CG7720
3L	16019568	3L_16019568_SNP [dm3] 3L_16026468_SNP [dm6]	C	T	3.050e^-5	0.641	INTRON Notum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16679041	2R_16679041_SNP [dm3] 2R_20791536_SNP [dm6]	C	T	3.091e^-5	0.641	UTR_3_PRIME CG43668 UPSTREAM CG43677
3R	2595257	3R_2595257_SNP [dm3] 3R_6769535_SNP [dm6]	G	A	3.108e^-5	0.641	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	1659171	2L_1659171_SNP [dm3] 2L_1659171_SNP [dm6]	G	T	3.179e^-5	0.641	INTRON chinmo
2R	16677943	2R_16677943_SNP [dm3] 2R_20790438_SNP [dm6]	G	T	3.236e^-5	0.641	UTR_3_PRIME CG43677 UPSTREAM CG43667
2R	14453838	2R_14453838_SNP [dm3] 2R_18566333_SNP [dm6]	G	T	3.254e^-5	0.641	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21075779	X_21075779_DEL [dm3] X_21204752_DEL [dm6]	ATG	A	3.255e^-5	0.641	DOWNSTREAM CG32521 INTERGENIC
2R	16678949	2R_16678949_SNP [dm3] 2R_20791444_SNP [dm6]	G	A	3.283e^-5	0.641	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
3R	27832814	3R_27832814_SNP [dm3] 3R_32007092_SNP [dm6]	A	C	3.347e^-5	0.642	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14851583	2L_14851583_SNP [dm3] 2L_14851583_SNP [dm6]	A	T	3.353e^-5	0.642	UTR_5_PRIME CG15279	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16679043	2R_16679043_SNP [dm3] 2R_20791538_SNP [dm6]	A	T	3.637e^-5	0.672	UTR_3_PRIME CG43668 UPSTREAM CG43677
X	5001494	X_5001494_SNP [dm3] X_5107461_SNP [dm6]	T	C	3.691e^-5	0.672	INTRON rg & 1 other
3L	1368332	3L_1368332_SNP [dm3] 3L_1368332_SNP [dm6]	A	T	3.723e^-5	0.672	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25638750	3R_25638750_SNP [dm3] 3R_29813028_SNP [dm6]	T	G	3.746e^-5	0.672	INTRON ca	TF binding site mE1_TFBS_chinmo
X	14470152	X_14470152_SNP [dm3] X_14576119_SNP [dm6]	G	A	3.769e^-5	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17737079	3L_17737079_SNP [dm3] 3L_17743979_SNP [dm6]	T	G	3.811e^-5	0.672	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2L	1620922	2L_1620922_SNP [dm3] 2L_1620922_SNP [dm6]	G	A	3.823e^-5	0.672	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10835164	2L_10835164_SNP [dm3] 2L_10835164_SNP [dm6]	C	T	3.827e^-5	0.672	INTRON Nos
2L	10198752	2L_10198752_INS [dm3] 2L_10198752_INS [dm6]	A	ATACCA	3.833e^-5	0.672	UTR_5_PRIME Sur DOWNSTREAM Ripalpha
2L	14849460	2L_14849460_SNP [dm3] 2L_14849460_SNP [dm6]	G	A	3.893e^-5	0.676	UPSTREAM CG15279 INTRON CG15279
X	14475556	X_14475556_SNP [dm3] X_14581523_SNP [dm6]	C	T	3.927e^-5	0.676	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	666350	2L_666350_DEL [dm3] 2L_666350_DEL [dm6]	ACGAC	A	3.986e^-5	0.68	INTRON ds
3R	2604150	3R_2604150_SNP [dm3] 3R_6778428_SNP [dm6]	G	A	4.093e^-5	0.686	DOWNSTREAM CR42721 INTRON CR42721 EXON CR43435
3R	2593472	3R_2593472_SNP [dm3] 3R_6767750_SNP [dm6]	T	C	4.112e^-5	0.686	INTRON CR42721
2L	14849449	2L_14849449_SNP [dm3] 2L_14849449_SNP [dm6]	T	A	4.165e^-5	0.686	UPSTREAM CG15279 INTRON CG15279
3R	20440372	3R_20440372_INS [dm3] 3R_24614650_INS [dm6]	T	TG	4.181e^-5	0.686	INTRON mld
3R	27832813	3R_27832813_SNP [dm3] 3R_32007091_SNP [dm6]	G	A	4.204e^-5	0.686	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5125514	2R_5125514_SNP [dm3] 2R_9238009_SNP [dm6]	C	T	4.306e^-5	0.696	SYNONYMOUS_CODING Cyp4p2 INTRON hig
2R	16680234	2R_16680234_SNP [dm3] 2R_20792729_SNP [dm6]	A	G	4.416e^-5	0.708	UPSTREAM CG15225 & 1 other INTERGENIC
3L	18824762	3L_18824762_SNP [dm3] 3L_18831662_SNP [dm6]	G	A	4.519e^-5	0.713	INTRON Indy
3R	3297725	3R_3297725_SNP [dm3] 3R_7472003_SNP [dm6]	G	A	4.524e^-5	0.713	DOWNSTREAM tRNA:V3b:84Dc & 2 others INTERGENIC
2L	1113989	2L_1113989_SNP [dm3] 2L_1113989_SNP [dm6]	G	T	4.578e^-5	0.715	UTR_3_PRIME CG14340 DOWNSTREAM Pino
3L	17737053	3L_17737053_INS [dm3] 3L_17743953_INS [dm6]	A	AA	4.642e^-5	0.72	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	13250989	3R_13250989_SNP [dm3] 3R_17425267_SNP [dm6]	A	G	4.698e^-5	0.722	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	2602591	3R_2602591_SNP [dm3] 3R_6776869_SNP [dm6]	A	G	4.756e^-5	0.723	DOWNSTREAM mir-993 INTRON CR42721 EXON CR42721
2L	666329	2L_666329_DEL [dm3] 2L_666329_DEL [dm6]	ATGGCAAAGTGGTGGACAAC...	A	4.840e^-5	0.723	INTRON ds
2L	19792536	2L_19792536_SNP [dm3] 2L_19792536_SNP [dm6]	C	T	4.889e^-5	0.723	SYNONYMOUS_CODING CG10466 UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	7716521	X_7716521_SNP [dm3] X_7822488_SNP [dm6]	G	A	4.902e^-5	0.723	INTERGENIC
3L	17737072	3L_17737072_SNP [dm3] 3L_17743972_SNP [dm6]	C	T	4.950e^-5	0.723	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2L	14847378	2L_14847378_SNP [dm3] 2L_14847378_SNP [dm6]	C	T	5.041e^-5	0.723	INTRON CG15279
2R	21010016	2R_21010016_SNP [dm3] 2R_25122493_SNP [dm6]	C	G	5.049e^-5	0.723	INTRON lov
3L	17484190	3L_17484190_SNP [dm3] 3L_17491090_SNP [dm6]	G	C	5.115e^-5	0.723	INTRON Oatp74D
3R	11246737	3R_11246737_SNP [dm3] 3R_15421015_SNP [dm6]	A	G	5.133e^-5	0.723	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	18623081	2L_18623081_SNP [dm3] 2L_18623081_SNP [dm6]	A	C	5.168e^-5	0.723	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2R	14575305	2R_14575305_SNP [dm3] 2R_18687800_SNP [dm6]	T	C	5.181e^-5	0.723	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10346595	X_10346595_SNP [dm3] X_10452562_SNP [dm6]	C	A	5.198e^-5	0.723	UPSTREAM CG32683 INTRON CG32683
2R	7886679	2R_7886679_DEL [dm3] 2R_11999174_DEL [dm6]	GG	G	5.206e^-5	0.723	INTERGENIC
3R	12088211	3R_12088211_SNP [dm3] 3R_16262489_SNP [dm6]	C	T	5.301e^-5	0.731	SYNONYMOUS_CODING bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14847779	2L_14847779_SNP [dm3] 2L_14847779_SNP [dm6]	G	C	5.367e^-5	0.735	INTRON CG15279
2L	14866296	2L_14866296_SNP [dm3] 2L_14866296_SNP [dm6]	T	C	5.469e^-5	0.741	INTERGENIC
2R	16685399	2R_16685399_SNP [dm3] 2R_20797894_SNP [dm6]	G	A	5.492e^-5	0.741	INTERGENIC
2L	7289524	2L_7289524_SNP [dm3] 2L_7289524_SNP [dm6]	T	A	5.535e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10966143	X_10966143_SNP [dm3] X_11072110_SNP [dm6]	A	G	5.874e^-5	0.767	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2L	14849446	2L_14849446_INS [dm3] 2L_14849446_INS [dm6]	T	TAAGG	5.879e^-5	0.767	UPSTREAM CG15279 INTRON CG15279
3L	17739452	3L_17739452_SNP [dm3] 3L_17746352_SNP [dm6]	T	C	5.892e^-5	0.767	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3912121	3L_3912121_SNP [dm3] 3L_3912121_SNP [dm6]	G	A	6.049e^-5	0.767	INTRON Eip63F-1
2R	16678951	2R_16678951_SNP [dm3] 2R_20791446_SNP [dm6]	G	C	6.110e^-5	0.767	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
3L	12890726	3L_12890726_SNP [dm3] 3L_12897626_SNP [dm6]	C	A	6.114e^-5	0.767	INTERGENIC
X	16893076	X_16893076_SNP [dm3] X_16999043_SNP [dm6]	A	C	6.142e^-5	0.767	INTRON CG45002
2L	7276018	2L_7276018_SNP [dm3] 2L_7276018_SNP [dm6]	T	A	6.163e^-5	0.767	UTR_5_PRIME Wnt4	TF binding site BDTNP1_TFBS_da
2R	16680297	2R_16680297_SNP [dm3] 2R_20792792_SNP [dm6]	A	T	6.192e^-5	0.767	UPSTREAM CG15225 & 1 other INTERGENIC
2L	14849451	2L_14849451_INS [dm3] 2L_14849451_INS [dm6]	A	AATAATTGCTCAGATATACT...	6.202e^-5	0.767	UPSTREAM CG15279 INTRON CG15279
3R	3309697	3R_3309697_SNP [dm3] 3R_7483975_SNP [dm6]	T	C	6.203e^-5	0.767	INTERGENIC
2R	16680311	2R_16680311_SNP [dm3] 2R_20792806_SNP [dm6]	A	G	6.215e^-5	0.767	UPSTREAM CG15225 & 1 other INTERGENIC
3L	3912387	3L_3912387_SNP [dm3] 3L_3912387_SNP [dm6]	G	A	6.316e^-5	0.774	INTRON Eip63F-1
X	14475717	X_14475717_SNP [dm3] X_14581684_SNP [dm6]	G	A	6.360e^-5	0.775	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
3L	13345329	3L_13345329_SNP [dm3] 3L_13352229_SNP [dm6]	G	A	6.411e^-5	0.775	SYNONYMOUS_CODING CG17687
3L	13386156	3L_13386156_SNP [dm3] 3L_13393056_SNP [dm6]	T	C	6.444e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	1595025	2L_1595025_SNP [dm3] 2L_1595025_SNP [dm6]	T	G	6.510e^-5	0.777	UTR_3_PRIME CG31935 INTRON haf
3L	16019570	3L_16019570_SNP [dm3] 3L_16026470_SNP [dm6]	T	C	6.616e^-5	0.777	INTRON Notum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15333669	3R_15333669_SNP [dm3] 3R_19507947_SNP [dm6]	G	C	6.669e^-5	0.777	INTRON Dys
2L	11833825	2L_11833825_SNP [dm3] 2L_11833825_SNP [dm6]	C	T	6.699e^-5	0.777	UPSTREAM CG45011 & 1 other INTRON Pde1c
X	12249573	X_12249573_SNP [dm3] X_12355540_SNP [dm6]	C	T	6.770e^-5	0.777	INTERGENIC
2R	17530985	2R_17530985_SNP [dm3] 2R_21643480_SNP [dm6]	A	C	6.777e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16660610	2R_16660610_SNP [dm3] 2R_20773105_SNP [dm6]	T	A	6.795e^-5	0.777	UPSTREAM CG13443 INTERGENIC
2L	14855322	2L_14855322_SNP [dm3] 2L_14855322_SNP [dm6]	C	G	6.801e^-5	0.777	INTERGENIC
3R	25897992	3R_25897992_SNP [dm3] 3R_30072270_SNP [dm6]	C	T	6.865e^-5	0.777	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	14574893	2R_14574893_SNP [dm3] 2R_18687388_SNP [dm6]	T	A	6.925e^-5	0.777	UTR_5_PRIME CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16118173	2L_16118173_SNP [dm3] 2L_16118173_SNP [dm6]	A	G	6.958e^-5	0.777	INTERGENIC
2L	14849398	2L_14849398_SNP [dm3] 2L_14849398_SNP [dm6]	G	A	6.975e^-5	0.777	UPSTREAM CG15279 INTRON CG15279
3R	2604643	3R_2604643_SNP [dm3] 3R_6778921_SNP [dm6]	C	T	7.003e^-5	0.777	INTRON CR42721 EXON CR43435
3R	18417894	3R_18417894_SNP [dm3] 3R_22592172_SNP [dm6]	C	G	7.124e^-5	0.782	INTRON Efa6	TF binding site BDTNP1_TFBS_dl
2R	4931400	2R_4931400_SNP [dm3] 2R_9043895_SNP [dm6]	G	A	7.126e^-5	0.782	SYNONYMOUS_CODING PPO2 DOWNSTREAM CG13743	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14848714	2L_14848714_SNP [dm3] 2L_14848714_SNP [dm6]	C	G	7.200e^-5	0.785	SYNONYMOUS_CODING CG15279
2R	13571616	2R_13571616_DEL [dm3] 2R_17684111_DEL [dm6]	AACATTTAATAAAT...	G	7.300e^-5	0.788	UPSTREAM Sema-1b & 1 other INTRON HPS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14847382	2L_14847382_SNP [dm3] 2L_14847382_SNP [dm6]	C	A	7.308e^-5	0.788	INTRON CG15279
3R	14523881	3R_14523881_SNP [dm3] 3R_18698159_SNP [dm6]	A	G	7.422e^-5	0.788	INTERGENIC
2L	11833828	2L_11833828_SNP [dm3] 2L_11833828_SNP [dm6]	G	A	7.473e^-5	0.788	UPSTREAM CG45011 & 1 other INTRON Pde1c
2R	17550285	2R_17550285_SNP [dm3] 2R_21662780_SNP [dm6]	A	T	7.479e^-5	0.788	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
2R	18670646	2R_18670646_SNP [dm3] 2R_22783141_SNP [dm6]	G	C	7.505e^-5	0.788	INTRON CG42260
2L	10535421	2L_10535421_SNP [dm3] 2L_10535421_SNP [dm6]	T	C	7.556e^-5	0.788	SYNONYMOUS_CODING CG18302
3L	22930843	3L_22930843_SNP [dm3] 3L_22937743_SNP [dm6]	A	G	7.568e^-5	0.788	INTERGENIC
2R	14127941	2R_14127941_SNP [dm3] 2R_18240436_SNP [dm6]	G	A	7.615e^-5	0.788	INTERGENIC
3R	16169024	3R_16169024_DEL [dm3] 3R_20343302_DEL [dm6]	ATGTGAAGAT	A	7.649e^-5	0.788	INTRON Ir92a
3L	5433082	3L_5433082_SNP [dm3] 3L_5439982_SNP [dm6]	A	G	7.742e^-5	0.788	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
2R	16679083	2R_16679083_INS [dm3] 2R_20791578_INS [dm6]	T	TT	7.795e^-5	0.788	UPSTREAM CG43677 INTRON CG43668
3R	14279635	3R_14279635_SNP [dm3] 3R_18453913_SNP [dm6]	C	T	7.808e^-5	0.788	INTRON fru
3L	17744071	3L_17744071_SNP [dm3] 3L_17750971_SNP [dm6]	A	G	7.817e^-5	0.788	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18707356	2R_18707356_SNP [dm3] 2R_22819851_SNP [dm6]	T	C	7.995e^-5	0.8	SYNONYMOUS_CODING CG30271	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5539193	2L_5539193_SNP [dm3] 2L_5539193_SNP [dm6]	C	A	8.034e^-5	0.8	UTR_5_PRIME CG14015 DOWNSTREAM Hel25E
3L	18833843	3L_18833843_SNP [dm3] 3L_18840743_SNP [dm6]	T	A	8.089e^-5	0.8	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10834527	2L_10834527_SNP [dm3] 2L_10834527_SNP [dm6]	G	C	8.132e^-5	0.8	INTRON Nos
2L	15569124	2L_15569124_SNP [dm3] 2L_15569124_SNP [dm6]	C	T	8.163e^-5	0.8	INTRON kek3
X	12249508	X_12249508_SNP [dm3] X_12355475_SNP [dm6]	A	G	8.393e^-5	0.8	INTERGENIC
2L	15075425	2L_15075425_SNP [dm3] 2L_15075425_SNP [dm6]	C	G	8.437e^-5	0.8	UTR_5_PRIME CG15270 INTRON CG15270
3L	18833979	3L_18833979_SNP [dm3] 3L_18840879_SNP [dm6]	C	A	8.445e^-5	0.8	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5868067	X_5868067_SNP [dm3] X_5974034_SNP [dm6]	G	A	8.502e^-5	0.8	INTRON Grip
3R	18148436	3R_18148436_SNP [dm3] 3R_22322714_SNP [dm6]	T	A	8.507e^-5	0.8	INTRON CG34377
3L	17736978	3L_17736978_SNP [dm3] 3L_17743878_SNP [dm6]	G	C	8.510e^-5	0.8	INTRON Ccn
2L	18623423	2L_18623423_SNP [dm3] 2L_18623423_SNP [dm6]	G	C	8.523e^-5	0.8	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10835177	2L_10835177_INS [dm3] 2L_10835177_INS [dm6]	A	AGAA	8.532e^-5	0.8	INTRON Nos
3L	10704682	3L_10704682_SNP [dm3] 3L_10711582_SNP [dm6]	C	T	8.553e^-5	0.8	INTERGENIC
2R	16680221	2R_16680221_SNP [dm3] 2R_20792716_SNP [dm6]	G	A	8.588e^-5	0.8	UPSTREAM CG15225 & 1 other INTERGENIC
2R	3090596	2R_3090596_SNP [dm3] 2R_7203091_SNP [dm6]	A	C	8.724e^-5	0.8	INTRON pk
2L	14865998	2L_14865998_SNP [dm3] 2L_14865998_SNP [dm6]	A	G	8.739e^-5	0.8	INTERGENIC
X	14720557	X_14720557_SNP [dm3] X_14826524_SNP [dm6]	A	T	8.740e^-5	0.8	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	906543	2L_906543_SNP [dm3] 2L_906543_SNP [dm6]	A	C	8.894e^-5	0.8	INTERGENIC
2L	14844900	2L_14844900_SNP [dm3] 2L_14844900_SNP [dm6]	C	A	8.928e^-5	0.8	DOWNSTREAM CG15279 INTERGENIC
2L	15569528	2L_15569528_SNP [dm3] 2L_15569528_SNP [dm6]	C	A	8.960e^-5	0.8	INTRON kek3
2L	18623447	2L_18623447_SNP [dm3] 2L_18623447_SNP [dm6]	G	T	9.002e^-5	0.8	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15309458	3R_15309458_SNP [dm3] 3R_19483736_SNP [dm6]	C	A	9.027e^-5	0.8	INTRON Dys
X	19050203	X_19050203_SNP [dm3] X_19156170_SNP [dm6]	G	A	9.073e^-5	0.8	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8269271	2L_8269271_SNP [dm3] 2L_8269271_SNP [dm6]	G	A	9.082e^-5	0.8	INTRON Btk29A
2L	3717956	2L_3717956_SNP [dm3] 2L_3717956_SNP [dm6]	T	A	9.123e^-5	0.8	UPSTREAM Shaw & 1 other INTERGENIC
2L	18434415	2L_18434415_DEL [dm3] 2L_18434415_DEL [dm6]	AA	A	9.126e^-5	0.8	DOWNSTREAM CR44488 INTERGENIC
2R	16453092	2R_16453092_SNP [dm3] 2R_20565587_SNP [dm6]	C	G	9.133e^-5	0.8	INTRON qsm
X	626600	X_626600_SNP [dm3] X_732567_SNP [dm6]	G	T	9.197e^-5	0.802	INTRON sdk
2L	5269182	2L_5269182_SNP [dm3] 2L_5269182_SNP [dm6]	G	A	9.348e^-5	0.802	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3R	9559820	3R_9559820_SNP [dm3] 3R_13734098_SNP [dm6]	G	T	9.381e^-5	0.802	INTRON CG34383
X	8552611	X_8552611_INS [dm3] X_8658578_INS [dm6]	A	ATG	9.459e^-5	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13707956	2R_13707956_SNP [dm3] 2R_17820451_SNP [dm6]	T	C	9.464e^-5	0.802	INTRON grh	transposable element FlyBase
3L	5281356	3L_5281356_SNP [dm3] 3L_5288256_SNP [dm6]	G	T	9.557e^-5	0.802	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15569519	2L_15569519_SNP [dm3] 2L_15569519_SNP [dm6]	C	G	9.561e^-5	0.802	INTRON kek3
2L	15801502	2L_15801502_SNP [dm3] 2L_15801502_SNP [dm6]	A	G	9.568e^-5	0.802	INTERGENIC
2L	10980473	2L_10980473_SNP [dm3] 2L_10980473_SNP [dm6]	A	T	9.590e^-5	0.802	SYNONYMOUS_CODING SCAR	TF binding site mE1_TFBS_cad
3L	2611964	3L_2611964_SNP [dm3] 3L_2611964_SNP [dm6]	G	A	9.596e^-5	0.802	SYNONYMOUS_CODING Pxn
3R	2604922	3R_2604922_SNP [dm3] 3R_6779200_SNP [dm6]	C	T	9.716e^-5	0.802	UPSTREAM CR43435 INTRON CR42721
2R	17027033	2R_17027033_SNP [dm3] 2R_21139528_SNP [dm6]	A	G	9.755e^-5	0.802	INTRON Magi
3R	18332285	3R_18332285_SNP [dm3] 3R_22506563_SNP [dm6]	G	A	9.794e^-5	0.802	INTRON Octbeta1R
X	5012873	X_5012873_DEL [dm3] X_5118840_DEL [dm6]	ACCATGCTC	A	9.799e^-5	0.802	INTRON rg & 1 other
X	5012882	X_5012882_INS [dm3] X_5118849_INS [dm6]	G	GTTGTAT	9.799e^-5	0.802	INTRON rg & 1 other
3R	8068091	3R_8068091_SNP [dm3] 3R_12242369_SNP [dm6]	T	C	9.924e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3717950	2L_3717950_SNP [dm3] 2L_3717950_SNP [dm6]	T	G	1.002e^-4	0.814	UPSTREAM Shaw & 1 other INTERGENIC
3R	3309643	3R_3309643_INS [dm3] 3R_7483921_INS [dm6]	T	TG	1.021e^-4	0.817	INTERGENIC
2L	15569498	2L_15569498_SNP [dm3] 2L_15569498_SNP [dm6]	C	G	1.030e^-4	0.817	INTRON kek3
2L	16118061	2L_16118061_SNP [dm3] 2L_16118061_SNP [dm6]	C	T	1.030e^-4	0.817	INTERGENIC
3R	10981584	3R_10981584_SNP [dm3] 3R_15155862_SNP [dm6]	C	G	1.031e^-4	0.817	INTRON Gyc88E
2R	16679021	2R_16679021_SNP [dm3] 2R_20791516_SNP [dm6]	G	T	1.043e^-4	0.817	UTR_3_PRIME CG43668 UPSTREAM CG43677
3R	8068106	3R_8068106_SNP [dm3] 3R_12242384_SNP [dm6]	A	C	1.049e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9548033	2R_9548033_SNP [dm3] 2R_13660528_SNP [dm6]	T	C	1.056e^-4	0.817	DOWNSTREAM CG6209 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16614987	X_16614987_SNP [dm3] X_16720954_SNP [dm6]	T	C	1.056e^-4	0.817	UPSTREAM CG32572 INTRON CG34325
2L	17344451	2L_17344451_SNP [dm3] 2L_17344451_SNP [dm6]	C	T	1.066e^-4	0.817	INTERGENIC
2L	7027332	2L_7027332_SNP [dm3] 2L_7027332_SNP [dm6]	C	A	1.071e^-4	0.817	UTR_5_PRIME CG31908 UPSTREAM CG3476 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14852884	2L_14852884_SNP [dm3] 2L_14852884_SNP [dm6]	T	C	1.074e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24716250	3R_24716250_SNP [dm3] 3R_28890528_SNP [dm6]	A	G	1.074e^-4	0.817	INTRON Doa
2R	8161079	2R_8161079_INS [dm3] 2R_12273574_INS [dm6]	C	CC	1.075e^-4	0.817	INTRON Cam
X	10465290	X_10465290_SNP [dm3] X_10571257_SNP [dm6]	C	T	1.115e^-4	0.817	INTRON spri
X	16087351	X_16087351_SNP [dm3] X_16193318_SNP [dm6]	T	A	1.119e^-4	0.817	INTERGENIC
2R	16679116	2R_16679116_SNP [dm3] 2R_20791611_SNP [dm6]	A	G	1.124e^-4	0.817	UPSTREAM CG43677 INTRON CG43668
2L	7027161	2L_7027161_SNP [dm3] 2L_7027161_SNP [dm6]	A	C	1.124e^-4	0.817	UTR_5_PRIME CG31908 UPSTREAM CG3476 INTRON CG31908	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22310669	3R_22310669_SNP [dm3] 3R_26484947_SNP [dm6]	A	T	1.128e^-4	0.817	INTRON plum
2R	16404920	2R_16404920_SNP [dm3] 2R_20517415_SNP [dm6]	T	C	1.128e^-4	0.817	INTERGENIC
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	1.131e^-4	0.817	INTRON CG17600
2L	7027460	2L_7027460_SNP [dm3] 2L_7027460_SNP [dm6]	T	A	1.132e^-4	0.817	UPSTREAM CG3476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3717919	2L_3717919_SNP [dm3] 2L_3717919_SNP [dm6]	T	A	1.138e^-4	0.817	UPSTREAM Shaw & 1 other INTERGENIC
2L	3717922	2L_3717922_SNP [dm3] 2L_3717922_SNP [dm6]	C	T	1.138e^-4	0.817	UPSTREAM Shaw & 1 other INTERGENIC
3R	14584800	3R_14584800_SNP [dm3] 3R_18759078_SNP [dm6]	G	A	1.140e^-4	0.817	UPSTREAM CG14299 DOWNSTREAM CG7720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	14866159	2L_14866159_SNP [dm3] 2L_14866159_SNP [dm6]	C	T	1.142e^-4	0.817	INTERGENIC
2R	10756107	2R_10756107_SNP [dm3] 2R_14868602_SNP [dm6]	G	A	1.143e^-4	0.817	INTRON Inr-a	TF binding site mE1_TFBS_cad
3R	17080815	3R_17080815_SNP [dm3] 3R_21255093_SNP [dm6]	T	C	1.148e^-4	0.817	INTRON ETHR
2R	16678065	2R_16678065_SNP [dm3] 2R_20790560_SNP [dm6]	T	A	1.154e^-4	0.817	STOP_GAINED CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3R	12238896	3R_12238896_SNP [dm3] 3R_16413174_SNP [dm6]	T	C	1.173e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	2776763	X_2776763_DEL [dm3] X_2882730_DEL [dm6]	TGTTGTTGTT	T	1.176e^-4	0.817	CODON_DELETION CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	13593372	3R_13593372_SNP [dm3] 3R_17767650_SNP [dm6]	C	G	1.182e^-4	0.817	DOWNSTREAM CG43102 INTERGENIC
2L	891275	2L_891275_SNP [dm3] 2L_891275_SNP [dm6]	T	C	1.183e^-4	0.817	INTERGENIC
3R	19800472	3R_19800472_SNP [dm3] 3R_23974750_SNP [dm6]	T	C	1.194e^-4	0.817	SYNONYMOUS_CODING CG31140 DOWNSTREAM CG31140 INTRON CG31140	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3319041	3R_3319041_SNP [dm3] 3R_7493319_SNP [dm6]	C	A	1.195e^-4	0.817	UPSTREAM CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3319042	3R_3319042_SNP [dm3] 3R_7493320_SNP [dm6]	A	C	1.195e^-4	0.817	UPSTREAM CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11544582	3L_11544582_SNP [dm3] 3L_11551482_SNP [dm6]	C	T	1.207e^-4	0.817	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	968198	2L_968198_SNP [dm3] 2L_968198_SNP [dm6]	A	G	1.211e^-4	0.817	INTERGENIC
2L	19716262	2L_19716262_SNP [dm3] 2L_19716262_SNP [dm6]	G	T	1.211e^-4	0.817	INTRON Lar
2R	13510467	2R_13510467_SNP [dm3] 2R_17622962_SNP [dm6]	C	A	1.231e^-4	0.817	INTRON CG10936
3R	13593191	3R_13593191_SNP [dm3] 3R_17767469_SNP [dm6]	T	C	1.239e^-4	0.817	DOWNSTREAM CG43102 INTERGENIC
3R	27656244	3R_27656244_SNP [dm3] 3R_31830522_SNP [dm6]	G	T	1.246e^-4	0.817	INTRON RhoGAP100F
3R	15390433	3R_15390433_INS [dm3] 3R_19564711_INS [dm6]	G	GTG	1.253e^-4	0.817	INTRON Dys
2L	5269055	2L_5269055_SNP [dm3] 2L_5269055_SNP [dm6]	C	T	1.257e^-4	0.817	SPLICE_SITE_REGION Cyp4ac3 SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
X	5012893	X_5012893_SNP [dm3] X_5118860_SNP [dm6]	G	A	1.264e^-4	0.817	INTRON rg & 1 other
2R	6568641	2R_6568641_SNP [dm3] 2R_10681136_SNP [dm6]	T	C	1.266e^-4	0.817	INTRON stan	TF binding site mE1_TFBS_Trl
3R	24716217	3R_24716217_SNP [dm3] 3R_28890495_SNP [dm6]	G	A	1.267e^-4	0.817	INTRON Doa
3R	24716260	3R_24716260_SNP [dm3] 3R_28890538_SNP [dm6]	T	A	1.267e^-4	0.817	INTRON Doa
3R	24716389	3R_24716389_SNP [dm3] 3R_28890667_SNP [dm6]	C	T	1.267e^-4	0.817	INTRON Doa
3L	18833477	3L_18833477_SNP [dm3] 3L_18840377_SNP [dm6]	C	T	1.270e^-4	0.817	UTR_5_PRIME Indy INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17080817	3R_17080817_SNP [dm3] 3R_21255095_SNP [dm6]	A	G	1.276e^-4	0.817	INTRON ETHR
X	10870271	X_10870271_SNP [dm3] X_10976238_SNP [dm6]	G	T	1.286e^-4	0.817	INTRON CG42339
3R	2600118	3R_2600118_SNP [dm3] 3R_6774396_SNP [dm6]	C	T	1.287e^-4	0.817	INTRON CR42721	TF binding site mE1_TFBS_cad
X	20484696	X_20484696_SNP [dm3] X_20613669_SNP [dm6]	T	A	1.289e^-4	0.817	INTRON RunxA
X	20484697	X_20484697_SNP [dm3] X_20613670_SNP [dm6]	C	T	1.289e^-4	0.817	INTRON RunxA
2L	15559636	2L_15559636_SNP [dm3] 2L_15559636_SNP [dm6]	A	C	1.307e^-4	0.817	INTRON kek3
2L	10835202	2L_10835202_SNP [dm3] 2L_10835202_SNP [dm6]	G	C	1.313e^-4	0.817	INTRON Nos
2L	5302611	2L_5302611_SNP [dm3] 2L_5302611_SNP [dm6]	T	C	1.319e^-4	0.817	INTRON vri
3L	11652860	3L_11652860_SNP [dm3] 3L_11659760_SNP [dm6]	C	T	1.320e^-4	0.817	INTRON CG32085
X	19427843	X_19427843_DEL [dm3] X_19533810_DEL [dm6]	GATCAGCAG	G	1.330e^-4	0.817	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18612577	2L_18612577_SNP [dm3] 2L_18612577_SNP [dm6]	T	C	1.335e^-4	0.817	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15324193	X_15324193_SNP [dm3] X_15430160_SNP [dm6]	G	A	1.339e^-4	0.817	INTRON Cngl
3R	20569723	3R_20569723_SNP [dm3] 3R_24744001_SNP [dm6]	C	T	1.340e^-4	0.817	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
3R	24716143	3R_24716143_SNP [dm3] 3R_28890421_SNP [dm6]	A	G	1.342e^-4	0.817	INTRON Doa	TF binding site BDTNP1_TFBS_dl
X	21932663	X_21932663_SNP [dm3] X_22530827_SNP [dm6]	G	A	1.345e^-4	0.817	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15869157	2L_15869157_SNP [dm3] 2L_15869157_SNP [dm6]	C	T	1.346e^-4	0.817	INTERGENIC
2L	1595034	2L_1595034_INS [dm3] 2L_1595034_INS [dm6]	A	AGCTGAAA	1.355e^-4	0.817	UTR_3_PRIME CG31935 INTRON haf
2R	12361481	2R_12361481_SNP [dm3] 2R_16473976_SNP [dm6]	G	C	1.356e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15553423	2L_15553423_SNP [dm3] 2L_15553423_SNP [dm6]	C	T	1.357e^-4	0.817	INTRON kek3
2L	16118165	2L_16118165_DEL [dm3] 2L_16118165_DEL [dm6]	AG	A	1.357e^-4	0.817	INTERGENIC
2L	16118183	2L_16118183_SNP [dm3] 2L_16118183_SNP [dm6]	G	T	1.357e^-4	0.817	INTERGENIC
X	20484693	X_20484693_SNP [dm3] X_20613666_SNP [dm6]	C	T	1.358e^-4	0.817	INTRON RunxA
3L	13468985	3L_13468985_SNP [dm3] 3L_13475885_SNP [dm6]	A	C	1.367e^-4	0.817	INTERGENIC
2L	6114630	2L_6114630_SNP [dm3] 2L_6114630_SNP [dm6]	A	C	1.372e^-4	0.817	INTRON stai
2R	16677314	2R_16677314_SNP [dm3] 2R_20789809_SNP [dm6]	T	C	1.383e^-4	0.817	NON_SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2L	15883182	2L_15883182_SNP [dm3] 2L_15883182_SNP [dm6]	T	A	1.384e^-4	0.817	UTR_5_PRIME CG44475
3R	6883408	3R_6883408_SNP [dm3] 3R_11057686_SNP [dm6]	G	T	1.385e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17874788	2R_17874788_SNP [dm3] 2R_21987283_SNP [dm6]	G	A	1.385e^-4	0.817	UTR_3_PRIME CG34370 UPSTREAM CG30401
X	20484700	X_20484700_INS [dm3] X_20613673_INS [dm6]	T	TTTAAGGTTTAGATG...	1.385e^-4	0.817	INTRON RunxA
X	20484706	X_20484706_SNP [dm3] X_20613679_SNP [dm6]	T	C	1.385e^-4	0.817	INTRON RunxA
3R	8816107	3R_8816107_SNP [dm3] 3R_12990385_SNP [dm6]	T	C	1.388e^-4	0.817	SYNONYMOUS_CODING CG31342 UTR_3_PRIME CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14767662	X_14767662_SNP [dm3] X_14873629_SNP [dm6]	T	C	1.388e^-4	0.817	INTRON Flo2
3L	10242377	3L_10242377_SNP [dm3] 3L_10249277_SNP [dm6]	T	C	1.393e^-4	0.817	UPSTREAM CR44540 INTERGENIC
3R	18332266	3R_18332266_SNP [dm3] 3R_22506544_SNP [dm6]	G	C	1.396e^-4	0.817	INTRON Octbeta1R
X	5869210	X_5869210_SNP [dm3] X_5975177_SNP [dm6]	T	C	1.404e^-4	0.817	INTRON Grip
3R	14592323	3R_14592323_SNP [dm3] 3R_18766601_SNP [dm6]	T	C	1.417e^-4	0.817	INTRON CG7720
3L	17735697	3L_17735697_SNP [dm3] 3L_17742597_SNP [dm6]	G	A	1.432e^-4	0.817	DOWNSTREAM CG7460 INTRON Ccn
3R	24715933	3R_24715933_SNP [dm3] 3R_28890211_SNP [dm6]	C	T	1.436e^-4	0.817	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16172262	3L_16172262_SNP [dm3] 3L_16179162_SNP [dm6]	A	C	1.438e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18332288	3R_18332288_SNP [dm3] 3R_22506566_SNP [dm6]	A	T	1.443e^-4	0.817	INTRON Octbeta1R
2R	3345614	2R_3345614_SNP [dm3] 2R_7458109_SNP [dm6]	G	A	1.456e^-4	0.817	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8865763	3L_8865763_SNP [dm3] 3L_8872663_SNP [dm6]	C	T	1.465e^-4	0.817	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	16228489	2L_16228489_SNP [dm3] 2L_16228489_SNP [dm6]	C	G	1.465e^-4	0.817	INTERGENIC
2L	16228498	2L_16228498_SNP [dm3] 2L_16228498_SNP [dm6]	A	T	1.465e^-4	0.817	INTERGENIC
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	1.469e^-4	0.817	NON_SYNONYMOUS_CODING CG17360
X	5868965	X_5868965_SNP [dm3] X_5974932_SNP [dm6]	T	A	1.470e^-4	0.817	INTRON Grip
2R	10825433	2R_10825433_SNP [dm3] 2R_14937928_SNP [dm6]	G	A	1.472e^-4	0.817	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14846766	2L_14846766_SNP [dm3] 2L_14846766_SNP [dm6]	C	T	1.479e^-4	0.817	INTRON CG15279
3L	17737033	3L_17737033_SNP [dm3] 3L_17743933_SNP [dm6]	T	G	1.480e^-4	0.817	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	11197221	3R_11197221_SNP [dm3] 3R_15371499_SNP [dm6]	A	G	1.482e^-4	0.817	SYNONYMOUS_CODING CG6136 UPSTREAM Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6153693	2R_6153693_SNP [dm3] 2R_10266188_SNP [dm6]	A	G	1.504e^-4	0.817	START_GAINED CG12910 UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910
2R	16678955	2R_16678955_DEL [dm3] 2R_20791450_DEL [dm6]	AA	A	1.505e^-4	0.817	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
2R	16678958	2R_16678958_SNP [dm3] 2R_20791453_SNP [dm6]	G	C	1.505e^-4	0.817	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
X	5868970	X_5868970_SNP [dm3] X_5974937_SNP [dm6]	A	T	1.507e^-4	0.817	INTRON Grip
3R	21945895	3R_21945895_SNP [dm3] 3R_26120173_SNP [dm6]	T	G	1.509e^-4	0.817	INTRON CG31324
2L	11400338	2L_11400338_SNP [dm3] 2L_11400338_SNP [dm6]	T	C	1.509e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
2L	14868886	2L_14868886_SNP [dm3] 2L_14868886_SNP [dm6]	C	T	1.509e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	2600703	3R_2600703_SNP [dm3] 3R_6774981_SNP [dm6]	G	T	1.514e^-4	0.817	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	16118057	2L_16118057_DEL [dm3] 2L_16118057_DEL [dm6]	CCA	C	1.515e^-4	0.817	INTERGENIC
X	10265582	X_10265582_SNP [dm3] X_10371549_SNP [dm6]	G	T	1.522e^-4	0.817	DOWNSTREAM CG32686 INTRON CG17841
2R	3090669	2R_3090669_SNP [dm3] 2R_7203164_SNP [dm6]	G	T	1.531e^-4	0.817	INTRON pk
3L	15662486	3L_15662486_SNP [dm3] 3L_15669386_SNP [dm6]	A	T	1.537e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11865979	2L_11865979_SNP [dm3] 2L_11865979_SNP [dm6]	C	T	1.542e^-4	0.817	INTRON Pde1c
3R	13410747	3R_13410747_SNP [dm3] 3R_17585025_SNP [dm6]	C	G	1.550e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8031997	3L_8031997_SNP [dm3] 3L_8038897_SNP [dm6]	G	A	1.552e^-4	0.817	INTRON nmo	TF binding site mE1_TFBS_inv
2R	5652860	2R_5652860_SNP [dm3] 2R_9765355_SNP [dm6]	C	A	1.567e^-4	0.817	SYNONYMOUS_CODING trpl UPSTREAM CR44205	TF binding site mE1_TFBS_inv
2L	18617130	2L_18617130_SNP [dm3] 2L_18617130_SNP [dm6]	A	T	1.574e^-4	0.817	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11926055	2R_11926055_SNP [dm3] 2R_16038550_SNP [dm6]	T	C	1.575e^-4	0.817	INTRON SP2353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21097054	3R_21097054_SNP [dm3] 3R_25271332_SNP [dm6]	T	A	1.579e^-4	0.817	UPSTREAM CG11891 INTRON CG11889 & 1 other
2R	8277585	2R_8277585_SNP [dm3] 2R_12390080_SNP [dm6]	C	A	1.580e^-4	0.817	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	11651098	2R_11651098_SNP [dm3] 2R_15763593_SNP [dm6]	C	T	1.584e^-4	0.817	SPLICE_SITE_REGION Zasp52 INTRON Zasp52
2L	7161405	2L_7161405_SNP [dm3] 2L_7161405_SNP [dm6]	G	A	1.586e^-4	0.817	INTERGENIC
X	16896146	X_16896146_SNP [dm3] X_17002113_SNP [dm6]	G	C	1.588e^-4	0.817	INTRON CG45002
3R	13638797	3R_13638797_SNP [dm3] 3R_17813075_SNP [dm6]	T	C	1.588e^-4	0.817	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	16695130	2R_16695130_SNP [dm3] 2R_20807625_SNP [dm6]	C	T	1.589e^-4	0.817	INTERGENIC
2L	11008401	2L_11008401_SNP [dm3] 2L_11008401_SNP [dm6]	G	A	1.590e^-4	0.817	SYNONYMOUS_CODING Nup154
3R	14592332	3R_14592332_MNP [dm3] 3R_18766610_MNP [dm6]	CGG	GAT	1.605e^-4	0.817	INTRON CG7720
X	13311593	X_13311593_SNP [dm3] X_13417560_SNP [dm6]	T	A	1.608e^-4	0.817	INTRON Set2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10727152	3R_10727152_SNP [dm3] 3R_14901430_SNP [dm6]	A	C	1.611e^-4	0.817	SYNONYMOUS_CODING RpS5b DOWNSTREAM VhaPPA1-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10962456	2L_10962456_SNP [dm3] 2L_10962456_SNP [dm6]	C	T	1.613e^-4	0.817	INTRON dpr2
2L	11832393	2L_11832393_DEL [dm3] 2L_11832393_DEL [dm6]	TAGAAGATGT	A	1.621e^-4	0.817	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7716342	X_7716342_SNP [dm3] X_7822309_SNP [dm6]	T	C	1.623e^-4	0.817	INTERGENIC
3L	7755476	3L_7755476_SNP [dm3] 3L_7762376_SNP [dm6]	C	T	1.627e^-4	0.817	SYNONYMOUS_CODING Hn UTR_5_PRIME Hn DOWNSTREAM Clk	TF binding site mE1_TFBS_sens
3L	17736545	3L_17736545_SNP [dm3] 3L_17743445_SNP [dm6]	C	A	1.633e^-4	0.817	DOWNSTREAM CG7460 INTRON Ccn
3L	6618307	3L_6618307_SNP [dm3] 3L_6625207_SNP [dm6]	T	A	1.636e^-4	0.817	INTRON GluRIA
2R	17542439	2R_17542439_SNP [dm3] 2R_21654934_SNP [dm6]	C	T	1.639e^-4	0.817	INTRON CG10082	TF binding site mE1_TFBS_cad
2L	5302612	2L_5302612_SNP [dm3] 2L_5302612_SNP [dm6]	A	T	1.643e^-4	0.817	INTRON vri
2R	14316124	2R_14316124_SNP [dm3] 2R_18428619_SNP [dm6]	C	T	1.644e^-4	0.817	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15559256	2L_15559256_SNP [dm3] 2L_15559256_SNP [dm6]	T	C	1.647e^-4	0.817	INTRON kek3
2L	14844884	2L_14844884_DEL [dm3] 2L_14844884_DEL [dm6]	GGG	G	1.649e^-4	0.817	DOWNSTREAM CG15279 INTERGENIC
X	13311420	X_13311420_SNP [dm3] X_13417387_SNP [dm6]	A	G	1.658e^-4	0.817	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15334577	3R_15334577_SNP [dm3] 3R_19508855_SNP [dm6]	C	T	1.669e^-4	0.817	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15324300	X_15324300_SNP [dm3] X_15430267_SNP [dm6]	G	A	1.673e^-4	0.817	INTRON Cngl
2L	3869220	2L_3869220_SNP [dm3] 2L_3869220_SNP [dm6]	G	A	1.677e^-4	0.817	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97	TF binding site mE1_TFBS_sens
3L	8865690	3L_8865690_SNP [dm3] 3L_8872590_SNP [dm6]	A	C	1.685e^-4	0.817	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	16049333	2L_16049333_SNP [dm3] 2L_16049333_SNP [dm6]	G	T	1.689e^-4	0.817	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13482735	2L_13482735_SNP [dm3] 2L_13482735_SNP [dm6]	C	G	1.719e^-4	0.817	INTRON CG42784
2L	17790758	2L_17790758_SNP [dm3] 2L_17790758_SNP [dm6]	C	G	1.721e^-4	0.817	INTRON CadN2
3R	2632778	3R_2632778_SNP [dm3] 3R_6807056_SNP [dm6]	T	C	1.724e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	21132948	3L_21132948_SNP [dm3] 3L_21139848_SNP [dm6]	A	C	1.724e^-4	0.817	INTRON Ac78C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11114677	2L_11114677_SNP [dm3] 2L_11114677_SNP [dm6]	C	G	1.729e^-4	0.817	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7149502	3R_7149502_SNP [dm3] 3R_11323780_SNP [dm6]	C	A	1.733e^-4	0.817	INTERGENIC
3R	22752598	3R_22752598_SNP [dm3] 3R_26926876_SNP [dm6]	T	C	1.735e^-4	0.817	INTRON sda
2L	20854801	2L_20854801_SNP [dm3] 2L_20854801_SNP [dm6]	C	T	1.742e^-4	0.817	INTRON twit
3R	22752842	3R_22752842_SNP [dm3] 3R_26927120_SNP [dm6]	C	T	1.745e^-4	0.817	INTRON sda
3R	3295568	3R_3295568_SNP [dm3] 3R_7469846_SNP [dm6]	T	C	1.748e^-4	0.817	INTERGENIC
2R	8333138	2R_8333138_SNP [dm3] 2R_12445633_SNP [dm6]	T	A	1.756e^-4	0.817	INTRON Dyb
3L	18833356	3L_18833356_SNP [dm3] 3L_18840256_SNP [dm6]	G	A	1.757e^-4	0.817	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	20316216	3R_20316216_DEL [dm3] 3R_24490494_DEL [dm6]	TT	T	1.766e^-4	0.817	INTRON nAChRalpha2
3L	12632387	3L_12632387_SNP [dm3] 3L_12639287_SNP [dm6]	C	A	1.781e^-4	0.817	INTRON CR32111
3R	8811375	3R_8811375_SNP [dm3] 3R_12985653_SNP [dm6]	C	A	1.789e^-4	0.817	UPSTREAM CG31342 DOWNSTREAM Paip2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16679094	2R_16679094_SNP [dm3] 2R_20791589_SNP [dm6]	C	G	1.795e^-4	0.817	UPSTREAM CG43677 INTRON CG43668
2R	10674704	2R_10674704_SNP [dm3] 2R_14787199_SNP [dm6]	C	T	1.800e^-4	0.817	INTRON kn
2R	14983874	2R_14983874_DEL [dm3] 2R_19096369_DEL [dm6]	TT	T	1.806e^-4	0.817	UPSTREAM Ir56a INTRON 5-HT1A
3L	13386103	3L_13386103_SNP [dm3] 3L_13393003_SNP [dm6]	G	A	1.808e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7024386	2L_7024386_SNP [dm3] 2L_7024386_SNP [dm6]	A	T	1.814e^-4	0.817	UPSTREAM ade3 DOWNSTREAM CG31908 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15157293	3L_15157293_SNP [dm3] 3L_15164193_SNP [dm6]	T	C	1.815e^-4	0.817	UPSTREAM CG7011 INTERGENIC
2R	18749544	2R_18749544_SNP [dm3] 2R_22862021_SNP [dm6]	G	A	1.816e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19274506	3L_19274506_SNP [dm3] 3L_19281406_SNP [dm6]	T	A	1.821e^-4	0.817	UTR_3_PRIME Gbs-76A UPSTREAM CG14089 DOWNSTREAM Gbs-76A
3L	3912140	3L_3912140_SNP [dm3] 3L_3912140_SNP [dm6]	A	T	1.832e^-4	0.817	INTRON Eip63F-1
2R	4800785	2R_4800785_SNP [dm3] 2R_8913280_SNP [dm6]	G	A	1.833e^-4	0.817	INTRON Pgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	18379576	2R_18379576_SNP [dm3] 2R_22492071_SNP [dm6]	T	A	1.839e^-4	0.817	UPSTREAM CG4610 DOWNSTREAM CG4554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14552254	3R_14552254_SNP [dm3] 3R_18726532_SNP [dm6]	T	C	1.843e^-4	0.817	UPSTREAM CG7714 INTRON Cha
X	14474495	X_14474495_SNP [dm3] X_14580462_SNP [dm6]	T	A	1.844e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4953502	2L_4953502_SNP [dm3] 2L_4953502_SNP [dm6]	A	G	1.844e^-4	0.817	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
3L	3912092	3L_3912092_SNP [dm3] 3L_3912092_SNP [dm6]	T	G	1.845e^-4	0.817	INTRON Eip63F-1
3L	9198775	3L_9198775_SNP [dm3] 3L_9205675_SNP [dm6]	A	T	1.846e^-4	0.817	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	14847879	2L_14847879_SNP [dm3] 2L_14847879_SNP [dm6]	A	G	1.853e^-4	0.817	INTRON CG15279
3R	14355149	3R_14355149_SNP [dm3] 3R_18529427_SNP [dm6]	T	G	1.865e^-4	0.817	INTRON fru
X	8553018	X_8553018_SNP [dm3] X_8658985_SNP [dm6]	C	T	1.868e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	2593376	3R_2593376_SNP [dm3] 3R_6767654_SNP [dm6]	C	A	1.871e^-4	0.817	DOWNSTREAM CR44930 INTRON CR42721	TF binding site mE1_TFBS_cad
2L	1620919	2L_1620919_SNP [dm3] 2L_1620919_SNP [dm6]	A	G	1.876e^-4	0.817	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15557835	2L_15557835_SNP [dm3] 2L_15557835_SNP [dm6]	T	C	1.879e^-4	0.817	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11012733	3L_11012733_SNP [dm3] 3L_11019633_SNP [dm6]	C	T	1.882e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	1.889e^-4	0.817	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10704681	3L_10704681_SNP [dm3] 3L_10711581_SNP [dm6]	G	C	1.899e^-4	0.817	INTERGENIC
3L	15643423	3L_15643423_SNP [dm3] 3L_15650323_SNP [dm6]	A	T	1.901e^-4	0.817	UPSTREAM Eig71Ea & 1 other INTRON Eig71Eb
3R	5423486	3R_5423486_SNP [dm3] 3R_9597764_SNP [dm6]	T	C	1.909e^-4	0.817	INTRON CG8312
X	14476436	X_14476436_SNP [dm3] X_14582403_SNP [dm6]	G	A	1.914e^-4	0.817	DOWNSTREAM CG14414 INTRON mRpS25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15557811	2L_15557811_SNP [dm3] 2L_15557811_SNP [dm6]	T	C	1.919e^-4	0.817	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11037411	2R_11037411_SNP [dm3] 2R_15149906_SNP [dm6]	C	G	1.927e^-4	0.817	DOWNSTREAM CG7544 INTERGENIC
3R	26255580	3R_26255580_SNP [dm3] 3R_30429858_SNP [dm6]	C	T	1.928e^-4	0.817	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2708417	3R_2708417_DEL [dm3] 3R_6882695_DEL [dm6]	ACAAACAAAA	A	1.929e^-4	0.817	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	10835216	2L_10835216_INS [dm3] 2L_10835216_INS [dm6]	A	AAA	1.932e^-4	0.817	INTRON Nos
3R	16718467	3R_16718467_SNP [dm3] 3R_20892745_SNP [dm6]	G	T	1.937e^-4	0.817	EXON CR44947
X	7719349	X_7719349_SNP [dm3] X_7825316_SNP [dm6]	T	C	1.938e^-4	0.817	UPSTREAM CG1402 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13311583	X_13311583_SNP [dm3] X_13417550_SNP [dm6]	G	A	1.941e^-4	0.817	INTRON Set2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20569681	3R_20569681_SNP [dm3] 3R_24743959_SNP [dm6]	T	A	1.947e^-4	0.817	INTRON tok	TF binding site mE1_TFBS_cad
2R	18657063	2R_18657063_SNP [dm3] 2R_22769558_SNP [dm6]	C	T	1.948e^-4	0.817	INTRON CG42260
3R	12354466	3R_12354466_SNP [dm3] 3R_16528744_SNP [dm6]	T	C	1.955e^-4	0.817	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14591471	3R_14591471_SNP [dm3] 3R_18765749_SNP [dm6]	C	T	1.955e^-4	0.817	INTRON CG7720
3R	2589074	3R_2589074_INS [dm3] 3R_6763352_INS [dm6]	A	ATAGAGATACTCAGA...	1.955e^-4	0.817	UPSTREAM Ama & 1 other INTRON Ama EXON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2L	16118140	2L_16118140_SNP [dm3] 2L_16118140_SNP [dm6]	T	G	1.956e^-4	0.817	INTERGENIC
2L	5269178	2L_5269178_SNP [dm3] 2L_5269178_SNP [dm6]	A	G	1.956e^-4	0.817	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
2L	1620917	2L_1620917_INS [dm3] 2L_1620917_INS [dm6]	T	TG	1.958e^-4	0.817	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16688299	2R_16688299_SNP [dm3] 2R_20800794_SNP [dm6]	G	C	1.962e^-4	0.817	INTERGENIC
2R	14575306	2R_14575306_SNP [dm3] 2R_18687801_SNP [dm6]	G	T	1.964e^-4	0.817	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16660640	2R_16660640_SNP [dm3] 2R_20773135_SNP [dm6]	G	T	1.965e^-4	0.817	UPSTREAM CG13443 INTERGENIC
2L	16884637	2L_16884637_SNP [dm3] 2L_16884637_SNP [dm6]	T	G	1.969e^-4	0.817	INTRON CG31743 & 1 other
3R	14353448	3R_14353448_SNP [dm3] 3R_18527726_SNP [dm6]	T	C	1.969e^-4	0.817	INTRON fru
3R	12966121	3R_12966121_SNP [dm3] 3R_17140399_SNP [dm6]	G	A	1.975e^-4	0.817	SYNONYMOUS_CODING CG5265 DOWNSTREAM TwdlW	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2757062	2R_2757062_SNP [dm3] 2R_6869557_SNP [dm6]	A	G	1.980e^-4	0.817	INTRON coro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12785725	3L_12785725_SNP [dm3] 3L_12792625_SNP [dm6]	C	T	1.984e^-4	0.817	INTRON Atg1 & 1 other
3R	11246733	3R_11246733_SNP [dm3] 3R_15421011_SNP [dm6]	C	T	1.984e^-4	0.817	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2R	8339979	2R_8339979_SNP [dm3] 2R_12452474_SNP [dm6]	C	T	2.007e^-4	0.817	UTR_3_PRIME Dyb UPSTREAM Lac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	14979294	2L_14979294_SNP [dm3] 2L_14979294_SNP [dm6]	T	C	2.026e^-4	0.817	INTRON mol
X	14474620	X_14474620_SNP [dm3] X_14580587_SNP [dm6]	T	C	2.026e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2722721	3L_2722721_SNP [dm3] 3L_2722721_SNP [dm6]	C	T	2.036e^-4	0.817	NON_SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25852565	3R_25852565_SNP [dm3] 3R_30026843_SNP [dm6]	C	T	2.038e^-4	0.817	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
2R	14574620	2R_14574620_SNP [dm3] 2R_18687115_SNP [dm6]	T	C	2.043e^-4	0.817	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8551097	X_8551097_SNP [dm3] X_8657064_SNP [dm6]	G	T	2.047e^-4	0.817	INTERGENIC
2R	16704023	2R_16704023_SNP [dm3] 2R_20816518_SNP [dm6]	A	G	2.054e^-4	0.817	INTERGENIC
2L	20877795	2L_20877795_SNP [dm3] 2L_20877795_SNP [dm6]	A	G	2.061e^-4	0.817	INTRON sky & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3297858	3R_3297858_SNP [dm3] 3R_7472136_SNP [dm6]	A	G	2.066e^-4	0.817	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
3R	13053229	3R_13053229_SNP [dm3] 3R_17227507_SNP [dm6]	C	A	2.066e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24088067	3R_24088067_SNP [dm3] 3R_28262345_SNP [dm6]	A	T	2.069e^-4	0.817	DOWNSTREAM CG43125 INTERGENIC
3R	2617072	3R_2617072_SNP [dm3] 3R_6791350_SNP [dm6]	T	A	2.077e^-4	0.817	UPSTREAM Dfd INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11476503	3R_11476503_SNP [dm3] 3R_15650781_SNP [dm6]	G	A	2.079e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13386237	3L_13386237_SNP [dm3] 3L_13393137_SNP [dm6]	G	T	2.084e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	14563922	X_14563922_SNP [dm3] X_14669889_SNP [dm6]	G	A	2.089e^-4	0.817	INTERGENIC
3R	24088061	3R_24088061_INS [dm3] 3R_28262339_INS [dm6]	C	CC	2.095e^-4	0.817	DOWNSTREAM CG43125 INTERGENIC
2R	6531614	2R_6531614_SNP [dm3] 2R_10644109_SNP [dm6]	A	C	2.105e^-4	0.817	INTRON Git	TF binding site mE1_TFBS_HSA
2R	17874789	2R_17874789_SNP [dm3] 2R_21987284_SNP [dm6]	A	G	2.110e^-4	0.817	UTR_3_PRIME CG34370 UPSTREAM CG30401
3R	2600557	3R_2600557_SNP [dm3] 3R_6774835_SNP [dm6]	G	C	2.114e^-4	0.817	INTRON CR42721	TF binding site mE1_TFBS_cad
X	5868981	X_5868981_SNP [dm3] X_5974948_SNP [dm6]	T	A	2.122e^-4	0.817	INTRON Grip
2R	5862376	2R_5862376_SNP [dm3] 2R_9974871_SNP [dm6]	T	C	2.126e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21248710	3L_21248710_SNP [dm3] 3L_21255610_SNP [dm6]	G	C	2.132e^-4	0.817	INTRON Eip78C
3L	13386246	3L_13386246_SNP [dm3] 3L_13393146_SNP [dm6]	C	T	2.135e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	2569839	3R_2569839_SNP [dm3] 3R_6744117_SNP [dm6]	C	G	2.136e^-4	0.817	UTR_5_PRIME zen2 UPSTREAM zen2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11651130	2R_11651130_SNP [dm3] 2R_15763625_SNP [dm6]	G	A	2.136e^-4	0.817	INTRON Zasp52
2R	8179526	2R_8179526_SNP [dm3] 2R_12292021_SNP [dm6]	A	G	2.145e^-4	0.817	INTRON CG42700
2L	15558005	2L_15558005_SNP [dm3] 2L_15558005_SNP [dm6]	T	A	2.153e^-4	0.817	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2346819	3R_2346819_SNP [dm3] 3R_6521097_SNP [dm6]	A	T	2.159e^-4	0.817	INTERGENIC
X	14475290	X_14475290_SNP [dm3] X_14581257_SNP [dm6]	A	G	2.165e^-4	0.817	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
2L	7027514	2L_7027514_SNP [dm3] 2L_7027514_SNP [dm6]	T	A	2.172e^-4	0.817	UPSTREAM CG3476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	16066779	2L_16066779_SNP [dm3] 2L_16066779_SNP [dm6]	C	T	2.172e^-4	0.817	INTRON beat-Ia
2L	16118118	2L_16118118_SNP [dm3] 2L_16118118_SNP [dm6]	C	T	2.178e^-4	0.817	INTERGENIC
3R	14444879	3R_14444879_SNP [dm3] 3R_18619157_SNP [dm6]	C	T	2.187e^-4	0.817	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
3R	20316181	3R_20316181_SNP [dm3] 3R_24490459_SNP [dm6]	G	A	2.189e^-4	0.817	INTRON nAChRalpha2
2R	20217823	2R_20217823_SNP [dm3] 2R_24330300_SNP [dm6]	G	A	2.192e^-4	0.817	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	3295570	3R_3295570_SNP [dm3] 3R_7469848_SNP [dm6]	C	T	2.205e^-4	0.817	INTERGENIC
3R	3295571	3R_3295571_SNP [dm3] 3R_7469849_SNP [dm6]	A	T	2.205e^-4	0.817	INTERGENIC
3R	12098022	3R_12098022_SNP [dm3] 3R_16272300_SNP [dm6]	T	A	2.207e^-4	0.817	NON_SYNONYMOUS_CODING Mat89Ba UPSTREAM gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1620934	2L_1620934_SNP [dm3] 2L_1620934_SNP [dm6]	G	A	2.212e^-4	0.817	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10835182	2L_10835182_SNP [dm3] 2L_10835182_SNP [dm6]	T	G	2.212e^-4	0.817	INTRON Nos
3R	2594946	3R_2594946_SNP [dm3] 3R_6769224_SNP [dm6]	A	T	2.212e^-4	0.817	INTRON CR42721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5868086	X_5868086_DEL [dm3] X_5974053_DEL [dm6]	TT	T	2.213e^-4	0.817	INTRON Grip
2R	16679880	2R_16679880_SNP [dm3] 2R_20792375_SNP [dm6]	T	A	2.214e^-4	0.817	UPSTREAM CG15225 & 1 other INTERGENIC
3R	16200741	3R_16200741_INS [dm3] 3R_20375019_INS [dm6]	T	TT	2.216e^-4	0.817	INTERGENIC
2L	13537734	2L_13537734_SNP [dm3] 2L_13537734_SNP [dm6]	A	G	2.219e^-4	0.817	INTRON B4
3R	20315835	3R_20315835_SNP [dm3] 3R_24490113_SNP [dm6]	G	C	2.220e^-4	0.817	INTRON nAChRalpha2
2L	16205315	2L_16205315_SNP [dm3] 2L_16205315_SNP [dm6]	T	C	2.234e^-4	0.817	INTERGENIC
2L	11832443	2L_11832443_SNP [dm3] 2L_11832443_SNP [dm6]	G	T	2.237e^-4	0.817	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6248067	2R_6248067_SNP [dm3] 2R_10360562_SNP [dm6]	A	T	2.237e^-4	0.817	NON_SYNONYMOUS_CODING CG43396 INTRON CG42732
2R	17299304	2R_17299304_SNP [dm3] 2R_21411799_SNP [dm6]	T	C	2.241e^-4	0.817	INTRON Sdc
3L	5375691	3L_5375691_SNP [dm3] 3L_5382591_SNP [dm6]	T	G	2.243e^-4	0.817	SYNONYMOUS_CODING Ir64a
3R	3715959	3R_3715959_DEL [dm3] 3R_7890237_DEL [dm6]	AGTATG	A	2.251e^-4	0.817	DOWNSTREAM CG10092 INTRON mRpS9
3R	3297938	3R_3297938_SNP [dm3] 3R_7472216_SNP [dm6]	T	A	2.263e^-4	0.817	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
X	16896895	X_16896895_SNP [dm3] X_17002862_SNP [dm6]	G	A	2.273e^-4	0.817	INTRON CG45002
3R	15390435	3R_15390435_SNP [dm3] 3R_19564713_SNP [dm6]	T	G	2.277e^-4	0.817	INTRON Dys
X	14476867	X_14476867_SNP [dm3] X_14582834_SNP [dm6]	A	G	2.279e^-4	0.817	SYNONYMOUS_CODING mRpS25 UPSTREAM nmdyn-D6 DOWNSTREAM CG14414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12319149	3R_12319149_SNP [dm3] 3R_16493427_SNP [dm6]	G	T	2.287e^-4	0.817	INTRON Cad89D
2L	14910244	2L_14910244_SNP [dm3] 2L_14910244_SNP [dm6]	G	A	2.292e^-4	0.817	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3081352	X_3081352_SNP [dm3] X_3187319_SNP [dm6]	A	T	2.294e^-4	0.817	INTRON dnc
3R	18019897	3R_18019897_SNP [dm3] 3R_22194175_SNP [dm6]	G	C	2.296e^-4	0.817	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad
3R	15333751	3R_15333751_SNP [dm3] 3R_19508029_SNP [dm6]	A	G	2.296e^-4	0.817	INTRON Dys
3R	3294726	3R_3294726_SNP [dm3] 3R_7469004_SNP [dm6]	A	G	2.297e^-4	0.817	UPSTREAM CR44934 INTERGENIC
3R	2604912	3R_2604912_SNP [dm3] 3R_6779190_SNP [dm6]	G	A	2.314e^-4	0.817	UPSTREAM CR43435 INTRON CR42721
X	14474158	X_14474158_SNP [dm3] X_14580125_SNP [dm6]	C	T	2.316e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	21310710	X_21310710_SNP [dm3] X_21439683_SNP [dm6]	G	A	2.331e^-4	0.817	INTRON CG42343	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15950078	3R_15950078_SNP [dm3] 3R_20124356_SNP [dm6]	C	T	2.332e^-4	0.817	INTERGENIC
2R	17635775	2R_17635775_SNP [dm3] 2R_21748270_SNP [dm6]	C	G	2.338e^-4	0.817	INTERGENIC
2L	8172639	2L_8172639_SNP [dm3] 2L_8172639_SNP [dm6]	G	T	2.338e^-4	0.817	INTRON Piezo
3R	2605862	3R_2605862_SNP [dm3] 3R_6780140_SNP [dm6]	T	G	2.341e^-4	0.817	DOWNSTREAM CR42721 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15556587	2L_15556587_DEL [dm3] 2L_15556587_DEL [dm6]	AAAA	A	2.342e^-4	0.817	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2699997	3R_2699997_SNP [dm3] 3R_6874275_SNP [dm6]	G	C	2.348e^-4	0.817	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	14854798	2L_14854798_SNP [dm3] 2L_14854798_SNP [dm6]	A	G	2.351e^-4	0.817	INTERGENIC
2L	15556579	2L_15556579_SNP [dm3] 2L_15556579_SNP [dm6]	T	C	2.354e^-4	0.817	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13012216	2R_13012216_SNP [dm3] 2R_17124711_SNP [dm6]	A	T	2.361e^-4	0.817	UPSTREAM Amy-d & 1 other DOWNSTREAM CR45272 INTERGENIC
2L	11134008	2L_11134008_SNP [dm3] 2L_11134008_SNP [dm6]	A	G	2.372e^-4	0.817	SYNONYMOUS_CODING CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12502900	3L_12502900_SNP [dm3] 3L_12509800_SNP [dm6]	C	A	2.379e^-4	0.817	SYNONYMOUS_CODING sti
3R	2603747	3R_2603747_SNP [dm3] 3R_6778025_SNP [dm6]	C	T	2.389e^-4	0.817	DOWNSTREAM CR43435 & 1 other INTRON CR42721
3L	13386143	3L_13386143_DEL [dm3] 3L_13393043_DEL [dm6]	CC	C	2.395e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	17735700	3L_17735700_SNP [dm3] 3L_17742600_SNP [dm6]	C	T	2.398e^-4	0.817	DOWNSTREAM CG7460 INTRON Ccn
2L	4377926	2L_4377926_SNP [dm3] 2L_4377926_SNP [dm6]	C	T	2.402e^-4	0.817	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14134338	3R_14134338_SNP [dm3] 3R_18308616_SNP [dm6]	G	A	2.402e^-4	0.817	INTRON PKD
2L	8141932	2L_8141932_SNP [dm3] 2L_8141932_SNP [dm6]	T	G	2.404e^-4	0.817	UPSTREAM mir-4984 INTRON CG8552
X	15324279	X_15324279_SNP [dm3] X_15430246_SNP [dm6]	A	T	2.418e^-4	0.817	INTRON Cngl
2L	15826093	2L_15826093_SNP [dm3] 2L_15826093_SNP [dm6]	T	C	2.418e^-4	0.817	INTERGENIC
2R	9552637	2R_9552637_SNP [dm3] 2R_13665132_SNP [dm6]	T	C	2.429e^-4	0.817	UTR_5_PRIME CG13337 INTRON fas
2L	17687372	2L_17687372_SNP [dm3] 2L_17687372_SNP [dm6]	G	A	2.430e^-4	0.817	INTRON CadN
3R	6335833	3R_6335833_SNP [dm3] 3R_10510111_SNP [dm6]	A	G	2.431e^-4	0.817	UTR_3_PRIME hth
3L	13159836	3L_13159836_SNP [dm3] 3L_13166736_SNP [dm6]	C	T	2.441e^-4	0.817	INTERGENIC
3R	13593387	3R_13593387_SNP [dm3] 3R_17767665_SNP [dm6]	G	A	2.442e^-4	0.817	DOWNSTREAM CG43102 INTERGENIC
3R	26630953	3R_26630953_SNP [dm3] 3R_30805231_SNP [dm6]	T	C	2.448e^-4	0.817	INTRON wts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14299338	2R_14299338_SNP [dm3] 2R_18411833_SNP [dm6]	T	A	2.462e^-4	0.817	UPSTREAM Dp1 & 1 other INTRON imd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	14847510	2L_14847510_SNP [dm3] 2L_14847510_SNP [dm6]	G	A	2.468e^-4	0.817	INTRON CG15279
3R	16516868	3R_16516868_SNP [dm3] 3R_20691146_SNP [dm6]	C	T	2.470e^-4	0.817	INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16678828	2R_16678828_SNP [dm3] 2R_20791323_SNP [dm6]	G	T	2.472e^-4	0.817	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
3L	9227687	3L_9227687_SNP [dm3] 3L_9234587_SNP [dm6]	C	T	2.472e^-4	0.817	DOWNSTREAM CG4483 INTERGENIC
X	18966091	X_18966091_SNP [dm3] X_19072058_SNP [dm6]	C	T	2.473e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	7285194	2L_7285194_SNP [dm3] 2L_7285194_SNP [dm6]	G	T	2.473e^-4	0.817	INTERGENIC
2L	17812962	2L_17812962_SNP [dm3] 2L_17812962_SNP [dm6]	A	G	2.475e^-4	0.817	UPSTREAM CG42830 INTRON CadN2
3R	11197535	3R_11197535_SNP [dm3] 3R_15371813_SNP [dm6]	T	C	2.478e^-4	0.817	START_LOST CG6136 UPSTREAM Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2593104	3R_2593104_SNP [dm3] 3R_6767382_SNP [dm6]	A	C	2.482e^-4	0.817	DOWNSTREAM CR44930 INTRON CR42721	TF binding site mE1_TFBS_cad
3R	17401225	3R_17401225_SNP [dm3] 3R_21575503_SNP [dm6]	G	A	2.483e^-4	0.817	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2733857	3L_2733857_SNP [dm3] 3L_2733857_SNP [dm6]	C	A	2.483e^-4	0.817	INTRON Mrtf
3R	11978651	3R_11978651_SNP [dm3] 3R_16152929_SNP [dm6]	A	G	2.491e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12552921	3L_12552921_SNP [dm3] 3L_12559821_SNP [dm6]	G	C	2.492e^-4	0.817	INTRON sowah
X	16568186	X_16568186_SNP [dm3] X_16674153_SNP [dm6]	C	A	2.494e^-4	0.817	INTRON CG13012
3R	2593073	3R_2593073_SNP [dm3] 3R_6767351_SNP [dm6]	G	A	2.514e^-4	0.817	DOWNSTREAM CR44930 INTRON CR42721	TF binding site mE1_TFBS_cad
3L	18847070	3L_18847070_SNP [dm3] 3L_18853970_SNP [dm6]	C	G	2.517e^-4	0.817	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16893129	X_16893129_SNP [dm3] X_16999096_SNP [dm6]	A	T	2.532e^-4	0.817	INTRON CG45002
2R	18053153	2R_18053153_SNP [dm3] 2R_22165648_SNP [dm6]	T	C	2.533e^-4	0.817	INTRON a
X	14473333	X_14473333_SNP [dm3] X_14579300_SNP [dm6]	T	C	2.544e^-4	0.817	INTERGENIC
2L	19761407	2L_19761407_SNP [dm3] 2L_19761407_SNP [dm6]	A	C	2.550e^-4	0.817	DOWNSTREAM fbp & 1 other INTERGENIC
X	8631659	X_8631659_SNP [dm3] X_8737626_SNP [dm6]	G	T	2.552e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	2612085	3L_2612085_DEL [dm3] 3L_2612085_DEL [dm6]	TGCGATT	T	2.552e^-4	0.817	INTRON Pxn
3L	9370388	3L_9370388_INS [dm3] 3L_9377288_INS [dm6]	A	TT	2.554e^-4	0.817	UTR_5_PRIME Hsp26 UPSTREAM CR43481 DOWNSTREAM CG4461 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13199390	2R_13199390_SNP [dm3] 2R_17311885_SNP [dm6]	A	T	2.563e^-4	0.817	INTRON mbl
2L	2083501	2L_2083501_SNP [dm3] 2L_2083501_SNP [dm6]	G	C	2.565e^-4	0.817	INTRON dpr3 EXON CR44055
3R	22721453	3R_22721453_SNP [dm3] 3R_26895731_SNP [dm6]	T	C	2.566e^-4	0.817	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	7607180	3R_7607180_SNP [dm3] 3R_11781458_SNP [dm6]	G	T	2.572e^-4	0.817	UTR_3_PRIME CG17360 DOWNSTREAM CR45595	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16901770	3L_16901770_SNP [dm3] 3L_16908670_SNP [dm6]	A	C	2.573e^-4	0.817	INTRON Lmpt
3R	24088064	3R_24088064_SNP [dm3] 3R_28262342_SNP [dm6]	A	T	2.581e^-4	0.817	DOWNSTREAM CG43125 INTERGENIC
3L	7146802	3L_7146802_SNP [dm3] 3L_7153702_SNP [dm6]	G	T	2.583e^-4	0.817	INTRON corn	TF binding site BDTNP1_TFBS_twi
3L	13486721	3L_13486721_SNP [dm3] 3L_13493621_SNP [dm6]	C	G	2.584e^-4	0.817	INTRON Tgi
X	16812419	X_16812419_SNP [dm3] X_16918386_SNP [dm6]	T	G	2.584e^-4	0.817	INTRON CG4928
2L	7288207	2L_7288207_SNP [dm3] 2L_7288207_SNP [dm6]	T	A	2.586e^-4	0.817	INTERGENIC
X	20935409	X_20935409_SNP [dm3] X_21064382_SNP [dm6]	T	C	2.586e^-4	0.817	UPSTREAM CG32512 INTRON bves & 1 other
3L	15331635	3L_15331635_SNP [dm3] 3L_15338535_SNP [dm6]	G	A	2.594e^-4	0.817	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4236880	2R_4236880_SNP [dm3] 2R_8349375_SNP [dm6]	A	T	2.600e^-4	0.817	INTRON pdm3
2L	15825122	2L_15825122_SNP [dm3] 2L_15825122_SNP [dm6]	G	T	2.600e^-4	0.817	INTERGENIC
3R	19782504	3R_19782504_SNP [dm3] 3R_23956782_SNP [dm6]	A	T	2.602e^-4	0.817	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
2L	17783828	2L_17783828_SNP [dm3] 2L_17783828_SNP [dm6]	A	G	2.611e^-4	0.817	INTERGENIC
3L	18824957	3L_18824957_SNP [dm3] 3L_18831857_SNP [dm6]	T	C	2.612e^-4	0.817	INTRON Indy
2R	9658123	2R_9658123_SNP [dm3] 2R_13770618_SNP [dm6]	T	C	2.623e^-4	0.817	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12348739	2R_12348739_SNP [dm3] 2R_16461234_SNP [dm6]	G	T	2.630e^-4	0.817	INTERGENIC
3R	16940427	3R_16940427_SNP [dm3] 3R_21114705_SNP [dm6]	C	T	2.632e^-4	0.817	INTRON Rab11
3R	23640336	3R_23640336_SNP [dm3] 3R_27814614_SNP [dm6]	G	A	2.633e^-4	0.817	INTRON CG34353
X	14297232	X_14297232_SNP [dm3] X_14403199_SNP [dm6]	G	A	2.645e^-4	0.817	INTRON dpr8
3L	957381	3L_957381_INS [dm3] 3L_957381_INS [dm6]	G	GG	2.645e^-4	0.817	INTRON Glut1
3L	8877773	3L_8877773_SNP [dm3] 3L_8884673_SNP [dm6]	T	A	2.654e^-4	0.817	INTRON dally
3R	14592349	3R_14592349_SNP [dm3] 3R_18766627_SNP [dm6]	G	C	2.656e^-4	0.817	INTRON CG7720
3R	14592356	3R_14592356_SNP [dm3] 3R_18766634_SNP [dm6]	G	T	2.656e^-4	0.817	INTRON CG7720
3L	17464744	3L_17464744_SNP [dm3] 3L_17471644_SNP [dm6]	G	A	2.656e^-4	0.817	INTRON CG7589
2R	13873978	2R_13873978_SNP [dm3] 2R_17986473_SNP [dm6]	T	A	2.657e^-4	0.817	INTRON dpr13
2L	16049330	2L_16049330_SNP [dm3] 2L_16049330_SNP [dm6]	G	A	2.674e^-4	0.817	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15553708	2L_15553708_SNP [dm3] 2L_15553708_SNP [dm6]	C	G	2.675e^-4	0.817	INTRON kek3
X	14474626	X_14474626_SNP [dm3] X_14580593_SNP [dm6]	A	T	2.676e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25781092	3R_25781092_SNP [dm3] 3R_29955370_SNP [dm6]	C	G	2.682e^-4	0.817	INTRON TkR99D
3L	6618248	3L_6618248_SNP [dm3] 3L_6625148_SNP [dm6]	A	G	2.683e^-4	0.817	INTRON GluRIA
3L	17738324	3L_17738324_SNP [dm3] 3L_17745224_SNP [dm6]	T	A	2.692e^-4	0.817	UTR_3_PRIME CG6034 INTRON Ccn
3R	3297953	3R_3297953_SNP [dm3] 3R_7472231_SNP [dm6]	T	C	2.692e^-4	0.817	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18633588	2L_18633588_SNP [dm3] 2L_18633588_SNP [dm6]	A	T	2.702e^-4	0.817	INTRON MESR3
2R	2900025	2R_2900025_SNP [dm3] 2R_7012520_SNP [dm6]	A	G	2.703e^-4	0.817	UTR_5_PRIME Tsp42Ee UPSTREAM Tsp42Ed INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20771179	2L_20771179_SNP [dm3] 2L_20771179_SNP [dm6]	A	G	2.704e^-4	0.817	SYNONYMOUS_CODING cad	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7285811	2L_7285811_SNP [dm3] 2L_7285811_SNP [dm6]	T	A	2.704e^-4	0.817	INTERGENIC
3R	2594245	3R_2594245_SNP [dm3] 3R_6768523_SNP [dm6]	G	T	2.707e^-4	0.817	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	1510613	2L_1510613_SNP [dm3] 2L_1510613_SNP [dm6]	C	A	2.722e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12251261	X_12251261_SNP [dm3] X_12357228_SNP [dm6]	A	C	2.727e^-4	0.817	INTERGENIC
X	22098261	X_22098261_SNP [dm3] X_22696425_SNP [dm6]	A	C	2.728e^-4	0.817	INTRON CR44997
2L	15556585	2L_15556585_SNP [dm3] 2L_15556585_SNP [dm6]	C	T	2.729e^-4	0.817	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8877760	3L_8877760_SNP [dm3] 3L_8884660_SNP [dm6]	T	C	2.738e^-4	0.817	INTRON dally
2L	7161867	2L_7161867_SNP [dm3] 2L_7161867_SNP [dm6]	C	G	2.746e^-4	0.817	INTERGENIC
3R	2593549	3R_2593549_SNP [dm3] 3R_6767827_SNP [dm6]	G	C	2.747e^-4	0.817	INTRON CR42721
3L	18831182	3L_18831182_SNP [dm3] 3L_18838082_SNP [dm6]	C	A	2.755e^-4	0.817	INTRON Indy	TF binding site mE1_TFBS_zfh1
3L	12404374	3L_12404374_SNP [dm3] 3L_12411274_SNP [dm6]	A	G	2.787e^-4	0.817	INTRON CG32103
2R	18687256	2R_18687256_SNP [dm3] 2R_22799751_SNP [dm6]	T	A	2.789e^-4	0.817	INTRON blw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	17687538	2L_17687538_SNP [dm3] 2L_17687538_SNP [dm6]	A	C	2.794e^-4	0.817	INTRON CadN
3R	6883407	3R_6883407_SNP [dm3] 3R_11057685_SNP [dm6]	G	A	2.796e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4544472	X_4544472_SNP [dm3] X_4650439_SNP [dm6]	G	A	2.798e^-4	0.817	SYNONYMOUS_CODING Cbp80 UPSTREAM Torsin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14474188	X_14474188_SNP [dm3] X_14580155_SNP [dm6]	G	A	2.806e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	14474509	X_14474509_SNP [dm3] X_14580476_SNP [dm6]	G	T	2.807e^-4	0.817	UPSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3109380	3R_3109380_SNP [dm3] 3R_7283658_SNP [dm6]	T	C	2.809e^-4	0.817	INTRON rn
3R	21945797	3R_21945797_SNP [dm3] 3R_26120075_SNP [dm6]	G	A	2.817e^-4	0.817	INTRON CG31324
2L	20430564	2L_20430564_SNP [dm3] 2L_20430564_SNP [dm6]	G	T	2.824e^-4	0.817	INTRON CG31688
3R	25269021	3R_25269021_DEL [dm3] 3R_29443299_DEL [dm6]	GG	G	2.828e^-4	0.817	INTRON Ptp99A
X	16897041	X_16897041_SNP [dm3] X_17003008_SNP [dm6]	C	G	2.829e^-4	0.817	INTRON CG45002
2L	15556583	2L_15556583_SNP [dm3] 2L_15556583_SNP [dm6]	T	C	2.829e^-4	0.817	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16168942	3R_16168942_SNP [dm3] 3R_20343220_SNP [dm6]	A	G	2.830e^-4	0.817	INTRON Ir92a
3R	18148441	3R_18148441_SNP [dm3] 3R_22322719_SNP [dm6]	T	C	2.835e^-4	0.817	INTRON CG34377
2R	18654758	2R_18654758_SNP [dm3] 2R_22767253_SNP [dm6]	T	G	2.836e^-4	0.817	INTRON CG42260
2L	15568713	2L_15568713_SNP [dm3] 2L_15568713_SNP [dm6]	G	A	2.839e^-4	0.817	INTRON kek3
2L	15568714	2L_15568714_SNP [dm3] 2L_15568714_SNP [dm6]	T	A	2.839e^-4	0.817	INTRON kek3
2L	11832587	2L_11832587_SNP [dm3] 2L_11832587_SNP [dm6]	G	C	2.846e^-4	0.817	INTRON Pde1c	TF binding site mE1_TFBS_HSA
2R	16679061	2R_16679061_SNP [dm3] 2R_20791556_SNP [dm6]	G	A	2.847e^-4	0.817	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
2R	11805274	2R_11805274_SNP [dm3] 2R_15917769_SNP [dm6]	T	C	2.855e^-4	0.817	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	11805302	2R_11805302_DEL [dm3] 2R_15917797_DEL [dm6]	TA	T	2.855e^-4	0.817	INTRON sli	TF binding site mE1_TFBS_cad
3R	3306037	3R_3306037_SNP [dm3] 3R_7480315_SNP [dm6]	C	A	2.882e^-4	0.817	INTERGENIC
3R	9752224	3R_9752224_SNP [dm3] 3R_13926502_SNP [dm6]	C	T	2.883e^-4	0.817	INTERGENIC
3R	14592355	3R_14592355_SNP [dm3] 3R_18766633_SNP [dm6]	G	A	2.885e^-4	0.817	INTRON CG7720
2R	17120613	2R_17120613_SNP [dm3] 2R_21233108_SNP [dm6]	C	T	2.885e^-4	0.817	INTRON ASPP
3L	13386157	3L_13386157_INS [dm3] 3L_13393057_INS [dm6]	C	CTAC	2.890e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	3295658	3R_3295658_DEL [dm3] 3R_7469936_DEL [dm6]	AGAGCAAA	A	2.892e^-4	0.817	INTERGENIC
3R	9137336	3R_9137336_SNP [dm3] 3R_13311614_SNP [dm6]	G	A	2.893e^-4	0.817	SYNONYMOUS_CODING CG32473
2R	17499322	2R_17499322_SNP [dm3] 2R_21611817_SNP [dm6]	T	G	2.895e^-4	0.817	INTRON CG15673
X	9761674	X_9761674_SNP [dm3] X_9867641_SNP [dm6]	A	C	2.898e^-4	0.817	DOWNSTREAM CG45060 & 1 other INTERGENIC
2L	12077626	2L_12077626_SNP [dm3] 2L_12077626_SNP [dm6]	A	G	2.900e^-4	0.817	SYNONYMOUS_CODING CG14947	regulatory region REDfly_CRMs
2R	1014671	2R_1014671_SNP [dm3] 2R_5127166_SNP [dm6]	A	G	2.911e^-4	0.817	UPSTREAM CR43256 INTRON gus	transposable element FlyBase
2R	14423903	2R_14423903_SNP [dm3] 2R_18536398_SNP [dm6]	C	T	2.914e^-4	0.817	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16229913	2L_16229913_SNP [dm3] 2L_16229913_SNP [dm6]	T	A	2.914e^-4	0.817	INTERGENIC
X	1539744	X_1539744_SNP [dm3] X_1645711_SNP [dm6]	C	T	2.921e^-4	0.817	DOWNSTREAM br INTRON Mur2B & 1 other
2L	7287447	2L_7287447_SNP [dm3] 2L_7287447_SNP [dm6]	C	A	2.929e^-4	0.817	INTERGENIC
2R	16343771	2R_16343771_SNP [dm3] 2R_20456266_SNP [dm6]	A	G	2.932e^-4	0.817	INTRON CG12484
3L	13386154	3L_13386154_SNP [dm3] 3L_13393054_SNP [dm6]	C	A	2.934e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	2604632	3R_2604632_INS [dm3] 3R_6778910_INS [dm6]	A	AGGT	2.935e^-4	0.817	INTRON CR42721 EXON CR43435
3R	2604636	3R_2604636_INS [dm3] 3R_6778914_INS [dm6]	T	AA	2.935e^-4	0.817	INTRON CR42721 EXON CR43435
3L	17388998	3L_17388998_SNP [dm3] 3L_17395898_SNP [dm6]	C	G	2.939e^-4	0.817	DOWNSTREAM blot INTERGENIC
2R	14983880	2R_14983880_SNP [dm3] 2R_19096375_SNP [dm6]	T	C	2.942e^-4	0.817	UPSTREAM Ir56a INTRON 5-HT1A
3L	1368283	3L_1368283_SNP [dm3] 3L_1368283_SNP [dm6]	G	A	2.942e^-4	0.817	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6618242	3L_6618242_SNP [dm3] 3L_6625142_SNP [dm6]	G	A	2.944e^-4	0.817	INTRON GluRIA
3L	11537742	3L_11537742_DEL [dm3] 3L_11544642_DEL [dm6]	CGAAC	C	2.950e^-4	0.817	INTRON Mob2
3R	3309874	3R_3309874_SNP [dm3] 3R_7484152_SNP [dm6]	T	G	2.962e^-4	0.817	INTERGENIC
2R	16678826	2R_16678826_SNP [dm3] 2R_20791321_SNP [dm6]	G	A	2.971e^-4	0.817	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
2R	10032826	2R_10032826_SNP [dm3] 2R_14145321_SNP [dm6]	C	A	2.975e^-4	0.817	DOWNSTREAM mir-989 INTERGENIC
3L	8031998	3L_8031998_SNP [dm3] 3L_8038898_SNP [dm6]	A	G	2.981e^-4	0.817	INTRON nmo	TF binding site mE1_TFBS_inv
2R	6896442	2R_6896442_SNP [dm3] 2R_11008937_SNP [dm6]	C	T	2.989e^-4	0.817	INTRON luna	TF binding site mE1_TFBS_inv
3R	17938459	3R_17938459_SNP [dm3] 3R_22112737_SNP [dm6]	A	T	2.990e^-4	0.817	UPSTREAM Ir94a INTERGENIC
3L	6618303	3L_6618303_SNP [dm3] 3L_6625203_SNP [dm6]	C	T	2.992e^-4	0.817	INTRON GluRIA
3L	3755208	3L_3755208_SNP [dm3] 3L_3755208_SNP [dm6]	T	C	2.994e^-4	0.817	UPSTREAM ppk27 INTRON CG32264
2L	14839669	2L_14839669_SNP [dm3] 2L_14839669_SNP [dm6]	T	G	2.998e^-4	0.817	DOWNSTREAM CR43805 INTERGENIC
3R	12174698	3R_12174698_SNP [dm3] 3R_16348976_SNP [dm6]	C	A	3.003e^-4	0.817	UTR_5_PRIME CG14879 UPSTREAM Manf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6271830	2R_6271830_SNP [dm3] 2R_10384325_SNP [dm6]	T	G	3.005e^-4	0.817	INTRON CG42732
3L	1903357	3L_1903357_SNP [dm3] 3L_1903357_SNP [dm6]	A	T	3.009e^-4	0.817	INTRON CG1887
X	16897038	X_16897038_SNP [dm3] X_17003005_SNP [dm6]	A	G	3.010e^-4	0.817	INTRON CG45002
3R	7377713	3R_7377713_SNP [dm3] 3R_11551991_SNP [dm6]	A	T	3.012e^-4	0.817	INTERGENIC
3R	3708140	3R_3708140_SNP [dm3] 3R_7882418_SNP [dm6]	T	C	3.020e^-4	0.817	INTRON CG17816
X	8513324	X_8513324_SNP [dm3] X_8619291_SNP [dm6]	T	A	3.022e^-4	0.817	INTERGENIC
3R	27832715	3R_27832715_SNP [dm3] 3R_32006993_SNP [dm6]	C	T	3.022e^-4	0.817	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11526479	3L_11526479_INS [dm3] 3L_11533379_INS [dm6]	C	CC	3.031e^-4	0.817	INTRON Mob2
2L	14847480	2L_14847480_SNP [dm3] 2L_14847480_SNP [dm6]	A	G	3.032e^-4	0.817	INTRON CG15279
2R	14575311	2R_14575311_SNP [dm3] 2R_18687806_SNP [dm6]	G	C	3.032e^-4	0.817	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10835220	2L_10835220_SNP [dm3] 2L_10835220_SNP [dm6]	A	T	3.048e^-4	0.817	INTRON Nos
3R	22753126	3R_22753126_SNP [dm3] 3R_26927404_SNP [dm6]	A	G	3.053e^-4	0.817	INTRON sda
3L	8865745	3L_8865745_SNP [dm3] 3L_8872645_SNP [dm6]	A	G	3.055e^-4	0.817	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	8258332	2L_8258332_SNP [dm3] 2L_8258332_SNP [dm6]	A	G	3.057e^-4	0.817	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC
2L	6249182	2L_6249182_SNP [dm3] 2L_6249182_SNP [dm6]	G	A	3.058e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	10141662	3R_10141662_SNP [dm3] 3R_14315940_SNP [dm6]	G	A	3.059e^-4	0.817	UPSTREAM pr-set7 DOWNSTREAM Crz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14845076	2L_14845076_INS [dm3] 2L_14845076_INS [dm6]	A	ATGTA	3.059e^-4	0.817	UTR_3_PRIME CG15279
2R	16684645	2R_16684645_SNP [dm3] 2R_20797140_SNP [dm6]	T	C	3.063e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13577874	3L_13577874_SNP [dm3] 3L_13584774_SNP [dm6]	G	C	3.078e^-4	0.817	INTRON bru-3
3R	12087946	3R_12087946_SNP [dm3] 3R_16262224_SNP [dm6]	A	C	3.090e^-4	0.817	INTRON bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11341758	3L_11341758_SNP [dm3] 3L_11348658_SNP [dm6]	T	A	3.094e^-4	0.817	DOWNSTREAM CR45251 INTERGENIC
3L	3599859	3L_3599859_SNP [dm3] 3L_3599859_SNP [dm6]	A	C	3.096e^-4	0.817	INTRON Eip63E
3R	15309504	3R_15309504_INS [dm3] 3R_19483782_INS [dm6]	C	CACC	3.113e^-4	0.817	INTRON Dys
X	20005188	X_20005188_SNP [dm3] X_20111155_SNP [dm6]	T	C	3.115e^-4	0.817	UPSTREAM karr INTERGENIC	transposable element FlyBase
2R	6533305	2R_6533305_SNP [dm3] 2R_10645800_SNP [dm6]	A	T	3.116e^-4	0.817	UTR_5_PRIME Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	15554498	2L_15554498_SNP [dm3] 2L_15554498_SNP [dm6]	C	T	3.120e^-4	0.817	INTRON kek3
2R	4186610	2R_4186610_SNP [dm3] 2R_8299105_SNP [dm6]	C	T	3.122e^-4	0.817	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23985413	3R_23985413_SNP [dm3] 3R_28159691_SNP [dm6]	G	C	3.126e^-4	0.817	INTRON CG34354
2L	3792996	2L_3792996_SNP [dm3] 2L_3792996_SNP [dm6]	T	A	3.127e^-4	0.817	NON_SYNONYMOUS_CODING CG3921
2L	3793001	2L_3793001_SNP [dm3] 2L_3793001_SNP [dm6]	G	A	3.127e^-4	0.817	SYNONYMOUS_CODING CG3921
2L	7107785	2L_7107785_SNP [dm3] 2L_7107785_SNP [dm6]	G	A	3.127e^-4	0.817	INTRON Pvf3
3L	2722995	3L_2722995_SNP [dm3] 3L_2722995_SNP [dm6]	G	T	3.130e^-4	0.817	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14575297	2R_14575297_SNP [dm3] 2R_18687792_SNP [dm6]	C	T	3.135e^-4	0.817	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2079930	2L_2079930_SNP [dm3] 2L_2079930_SNP [dm6]	T	C	3.135e^-4	0.817	UTR_5_PRIME CG12674 INTRON dpr3
3L	17738224	3L_17738224_INS [dm3] 3L_17745124_INS [dm6]	G	GG	3.140e^-4	0.817	DOWNSTREAM CG6034 INTRON Ccn
X	7718311	X_7718311_SNP [dm3] X_7824278_SNP [dm6]	A	T	3.153e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1620928	2L_1620928_SNP [dm3] 2L_1620928_SNP [dm6]	A	C	3.157e^-4	0.817	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24716037	3R_24716037_SNP [dm3] 3R_28890315_SNP [dm6]	C	T	3.159e^-4	0.817	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10208123	3R_10208123_SNP [dm3] 3R_14382401_SNP [dm6]	G	A	3.163e^-4	0.817	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1078717	2L_1078717_SNP [dm3] 2L_1078717_SNP [dm6]	C	T	3.166e^-4	0.817	SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	940891	2L_940891_DEL [dm3] 2L_940891_DEL [dm6]	AAAA	C	3.175e^-4	0.817	INTRON CG4341
3L	12062870	3L_12062870_SNP [dm3] 3L_12069770_SNP [dm6]	C	T	3.175e^-4	0.817	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	3970331	X_3970331_SNP [dm3] X_4076298_SNP [dm6]	C	A	3.189e^-4	0.817	UTR_5_PRIME CG43689
3L	10195382	3L_10195382_SNP [dm3] 3L_10202282_SNP [dm6]	C	T	3.190e^-4	0.817	UPSTREAM ect INTERGENIC
2L	14296401	2L_14296401_SNP [dm3] 2L_14296401_SNP [dm6]	G	A	3.196e^-4	0.817	INTRON wb
3R	14539578	3R_14539578_SNP [dm3] 3R_18713856_SNP [dm6]	A	G	3.199e^-4	0.817	SYNONYMOUS_CODING VAChT INTRON Cha
3R	20569679	3R_20569679_SNP [dm3] 3R_24743957_SNP [dm6]	A	G	3.199e^-4	0.817	INTRON tok	TF binding site mE1_TFBS_cad
3L	5305123	3L_5305123_SNP [dm3] 3L_5312023_SNP [dm6]	C	G	3.201e^-4	0.817	INTERGENIC
2R	17530812	2R_17530812_SNP [dm3] 2R_21643307_SNP [dm6]	A	C	3.202e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12785411	3R_12785411_SNP [dm3] 3R_16959689_SNP [dm6]	A	T	3.205e^-4	0.817	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16678461	2R_16678461_SNP [dm3] 2R_20790956_SNP [dm6]	G	A	3.217e^-4	0.817	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2R	14349082	2R_14349082_SNP [dm3] 2R_18461577_SNP [dm6]	T	G	3.222e^-4	0.817	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2L	17344458	2L_17344458_SNP [dm3] 2L_17344458_SNP [dm6]	C	A	3.223e^-4	0.817	INTERGENIC
3R	6464511	3R_6464511_SNP [dm3] 3R_10638789_SNP [dm6]	C	T	3.224e^-4	0.817	UTR_5_PRIME hth UPSTREAM CR44018	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14575320	2R_14575320_SNP [dm3] 2R_18687815_SNP [dm6]	C	A	3.230e^-4	0.817	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12631047	3L_12631047_SNP [dm3] 3L_12637947_SNP [dm6]	A	G	3.234e^-4	0.817	INTRON CR32111
2R	5838521	2R_5838521_SNP [dm3] 2R_9951016_SNP [dm6]	G	A	3.241e^-4	0.817	INTRON Mef2
2L	21945912	2L_21945912_SNP [dm3] 2L_21945912_SNP [dm6]	G	A	3.244e^-4	0.817	INTERGENIC
3L	23488047	3L_23488047_SNP [dm3] 3L_23494947_SNP [dm6]	G	T	3.251e^-4	0.817	INTERGENIC	transposable element FlyBase
3R	11197377	3R_11197377_SNP [dm3] 3R_15371655_SNP [dm6]	A	G	3.253e^-4	0.817	SYNONYMOUS_CODING CG6136 UPSTREAM Ccm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2709606	3R_2709606_SNP [dm3] 3R_6883884_SNP [dm6]	T	A	3.264e^-4	0.817	INTRON CR44931	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	2607870	2R_2607870_SNP [dm3] 2R_6720365_SNP [dm6]	A	T	3.265e^-4	0.817	UPSTREAM Zip42C.2 DOWNSTREAM l_2_01289 INTERGENIC
3R	12290450	3R_12290450_SNP [dm3] 3R_16464728_SNP [dm6]	T	C	3.272e^-4	0.817	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	3286503	3R_3286503_SNP [dm3] 3R_7460781_SNP [dm6]	A	T	3.273e^-4	0.817	INTERGENIC
3L	13386148	3L_13386148_INS [dm3] 3L_13393048_INS [dm6]	C	CTCC	3.273e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	22960103	3L_22960103_SNP [dm3] 3L_22967003_SNP [dm6]	G	A	3.275e^-4	0.817	INTERGENIC
2R	20318270	2R_20318270_SNP [dm3] 2R_24430747_SNP [dm6]	C	T	3.281e^-4	0.817	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
3R	2771504	3R_2771504_SNP [dm3] 3R_6945782_SNP [dm6]	A	T	3.284e^-4	0.817	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22136258	X_22136258_SNP [dm3] X_22734422_SNP [dm6]	T	C	3.285e^-4	0.817	INTRON CR44997
3L	18831176	3L_18831176_SNP [dm3] 3L_18838076_SNP [dm6]	A	T	3.292e^-4	0.817	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	18983214	X_18983214_SNP [dm3] X_19089181_SNP [dm6]	G	A	3.302e^-4	0.817	INTERGENIC
3R	3298118	3R_3298118_SNP [dm3] 3R_7472396_SNP [dm6]	C	T	3.305e^-4	0.817	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21916464	X_21916464_SNP [dm3] X_22514628_SNP [dm6]	C	T	3.306e^-4	0.817	UPSTREAM CG17600 EXON CR43962	TF binding site BDTNP1_TFBS_dl
3L	10695331	3L_10695331_SNP [dm3] 3L_10702231_SNP [dm6]	C	T	3.307e^-4	0.817	INTERGENIC
3L	6727421	3L_6727421_SNP [dm3] 3L_6734321_SNP [dm6]	C	T	3.309e^-4	0.817	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13302421	3L_13302421_SNP [dm3] 3L_13309321_SNP [dm6]	C	T	3.310e^-4	0.817	INTERGENIC
2L	11121169	2L_11121169_SNP [dm3] 2L_11121169_SNP [dm6]	G	A	3.313e^-4	0.817	SYNONYMOUS_CODING CG14921 UPSTREAM CG6230	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14574421	2R_14574421_SNP [dm3] 2R_18686916_SNP [dm6]	T	C	3.320e^-4	0.817	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7287662	2L_7287662_SNP [dm3] 2L_7287662_SNP [dm6]	G	C	3.321e^-4	0.817	INTERGENIC
3R	20569682	3R_20569682_SNP [dm3] 3R_24743960_SNP [dm6]	A	C	3.329e^-4	0.817	INTRON tok	TF binding site mE1_TFBS_cad
3R	16709130	3R_16709130_SNP [dm3] 3R_20883408_SNP [dm6]	C	T	3.330e^-4	0.817	INTERGENIC
3R	3268127	3R_3268127_SNP [dm3] 3R_7442405_SNP [dm6]	A	G	3.336e^-4	0.817	DOWNSTREAM CG14598 INTERGENIC
2L	11120305	2L_11120305_SNP [dm3] 2L_11120305_SNP [dm6]	C	G	3.341e^-4	0.817	START_GAINED CG6230 UTR_5_PRIME CG6230 DOWNSTREAM CG14921	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8816655	3R_8816655_SNP [dm3] 3R_12990933_SNP [dm6]	A	T	3.347e^-4	0.817	UTR_3_PRIME CG31342 DOWNSTREAM yellow-f	TF binding site mE1_TFBS_cad
3R	2829302	3R_2829302_SNP [dm3] 3R_7003580_SNP [dm6]	A	G	3.348e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17861530	3R_17861530_SNP [dm3] 3R_22035808_SNP [dm6]	T	G	3.350e^-4	0.817	UTR_5_PRIME pit UPSTREAM scaRNA:MeU5-G38 DOWNSTREAM Fadd INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18704471	3R_18704471_SNP [dm3] 3R_22878749_SNP [dm6]	C	T	3.353e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19813585	2L_19813585_SNP [dm3] 2L_19813585_SNP [dm6]	T	G	3.362e^-4	0.817	DOWNSTREAM CG13962 & 1 other INTRON sick
2R	20313138	2R_20313138_SNP [dm3] 2R_24425615_SNP [dm6]	A	C	3.363e^-4	0.817	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12552888	3L_12552888_SNP [dm3] 3L_12559788_SNP [dm6]	C	A	3.367e^-4	0.817	INTRON sowah
2L	10535508	2L_10535508_SNP [dm3] 2L_10535508_SNP [dm6]	A	G	3.375e^-4	0.817	SYNONYMOUS_CODING CG18302
2R	801965	2R_801965_SNP [dm3] 2R_4914460_SNP [dm6]	T	C	3.375e^-4	0.817	INTERGENIC	transposable element FlyBase
2R	19561173	2R_19561173_SNP [dm3] 2R_23673650_SNP [dm6]	C	T	3.377e^-4	0.817	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18379479	2R_18379479_SNP [dm3] 2R_22491974_SNP [dm6]	G	A	3.379e^-4	0.817	UTR_3_PRIME CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5534425	2L_5534425_SNP [dm3] 2L_5534425_SNP [dm6]	T	C	3.379e^-4	0.817	SYNONYMOUS_CODING Cap-D3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16118172	2L_16118172_SNP [dm3] 2L_16118172_SNP [dm6]	C	A	3.380e^-4	0.817	INTERGENIC
2L	5518780	2L_5518780_SNP [dm3] 2L_5518780_SNP [dm6]	C	T	3.382e^-4	0.817	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9559817	3R_9559817_SNP [dm3] 3R_13734095_SNP [dm6]	A	G	3.392e^-4	0.817	INTRON CG34383
X	21077037	X_21077037_SNP [dm3] X_21206010_SNP [dm6]	T	C	3.392e^-4	0.817	SYNONYMOUS_CODING CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17635765	2R_17635765_SNP [dm3] 2R_21748260_SNP [dm6]	A	T	3.393e^-4	0.817	INTERGENIC
3R	4752032	3R_4752032_DEL [dm3] 3R_8926310_DEL [dm6]	TT	T	3.397e^-4	0.817	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18537420	2L_18537420_SNP [dm3] 2L_18537420_SNP [dm6]	A	G	3.401e^-4	0.817	SYNONYMOUS_CODING Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18379523	2R_18379523_SNP [dm3] 2R_22492018_SNP [dm6]	A	T	3.401e^-4	0.817	UTR_3_PRIME CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5865901	2R_5865901_SNP [dm3] 2R_9978396_SNP [dm6]	G	T	3.402e^-4	0.817	UPSTREAM eve EXON CR43948	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	16023968	2L_16023968_DEL [dm3] 2L_16023968_DEL [dm6]	GG	G	3.411e^-4	0.817	INTRON beat-Ic
2R	15594780	2R_15594780_SNP [dm3] 2R_19707275_SNP [dm6]	G	A	3.432e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18379485	2R_18379485_SNP [dm3] 2R_22491980_SNP [dm6]	A	T	3.440e^-4	0.817	UTR_3_PRIME CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14751814	2L_14751814_SNP [dm3] 2L_14751814_SNP [dm6]	T	C	3.441e^-4	0.817	INTERGENIC
2L	15556796	2L_15556796_SNP [dm3] 2L_15556796_SNP [dm6]	G	A	3.442e^-4	0.817	INTRON kek3	TF binding site mE1_TFBS_HSA
3L	10239558	3L_10239558_SNP [dm3] 3L_10246458_SNP [dm6]	T	C	3.447e^-4	0.817	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
2R	18697237	2R_18697237_SNP [dm3] 2R_22809732_SNP [dm6]	G	C	3.457e^-4	0.817	INTRON stl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16718466	3R_16718466_SNP [dm3] 3R_20892744_SNP [dm6]	T	A	3.461e^-4	0.817	EXON CR44947
3R	9301952	3R_9301952_SNP [dm3] 3R_13476230_SNP [dm6]	G	C	3.469e^-4	0.817	INTERGENIC
2L	793417	2L_793417_DEL [dm3] 2L_793417_DEL [dm6]	GGGCGGGAAA	G	3.470e^-4	0.817	INTERGENIC
3L	17736914	3L_17736914_SNP [dm3] 3L_17743814_SNP [dm6]	T	C	3.472e^-4	0.817	INTRON Ccn
3R	11439013	3R_11439013_SNP [dm3] 3R_15613291_SNP [dm6]	G	T	3.480e^-4	0.817	INTERGENIC
2R	16660627	2R_16660627_SNP [dm3] 2R_20773122_SNP [dm6]	A	G	3.483e^-4	0.817	UPSTREAM CG13443 INTERGENIC
2R	16660632	2R_16660632_SNP [dm3] 2R_20773127_SNP [dm6]	G	T	3.483e^-4	0.817	UPSTREAM CG13443 INTERGENIC
3L	3003074	3L_3003074_SNP [dm3] 3L_3003074_SNP [dm6]	T	A	3.489e^-4	0.817	UPSTREAM FMRFaR INTRON FMRFaR
2L	4232170	2L_4232170_SNP [dm3] 2L_4232170_SNP [dm6]	T	C	3.489e^-4	0.817	INTERGENIC
2R	20318279	2R_20318279_DEL [dm3] 2R_24430756_DEL [dm6]	CTGCTGATTAAGGCTGATTA...	TGGCTGATTAGGG...	3.489e^-4	0.817	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
3R	25909570	3R_25909570_SNP [dm3] 3R_30083848_SNP [dm6]	C	G	3.490e^-4	0.817	INTRON sima	TF binding site mE1_TFBS_Trl
3R	7119383	3R_7119383_SNP [dm3] 3R_11293661_SNP [dm6]	G	C	3.495e^-4	0.817	INTRON CR31386
3R	17471144	3R_17471144_SNP [dm3] 3R_21645422_SNP [dm6]	T	C	3.503e^-4	0.817	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	2594814	3R_2594814_SNP [dm3] 3R_6769092_SNP [dm6]	T	A	3.503e^-4	0.817	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14854502	3L_14854502_SNP [dm3] 3L_14861402_SNP [dm6]	C	T	3.506e^-4	0.817	INTRON CG17839
2L	11192264	2L_11192264_SNP [dm3] 2L_11192264_SNP [dm6]	G	T	3.508e^-4	0.817	INTRON Ca-beta
3L	15643558	3L_15643558_SNP [dm3] 3L_15650458_SNP [dm6]	T	C	3.512e^-4	0.817	UTR_3_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other
3R	2771501	3R_2771501_SNP [dm3] 3R_6945779_SNP [dm6]	C	T	3.518e^-4	0.817	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16312155	2L_16312155_SNP [dm3] 2L_16312155_SNP [dm6]	A	G	3.520e^-4	0.817	SYNONYMOUS_CODING fzy DOWNSTREAM cact	TF binding site mE1_TFBS_sens
2R	12884685	2R_12884685_SNP [dm3] 2R_16997180_SNP [dm6]	C	T	3.522e^-4	0.817	SYNONYMOUS_CODING ste24c UTR_5_PRIME CG30461 UPSTREAM CG30461
3R	2600226	3R_2600226_SNP [dm3] 3R_6774504_SNP [dm6]	A	G	3.528e^-4	0.817	INTRON CR42721	TF binding site mE1_TFBS_cad
2R	14827687	2R_14827687_SNP [dm3] 2R_18940182_SNP [dm6]	G	A	3.529e^-4	0.817	INTRON sano
3R	16200926	3R_16200926_SNP [dm3] 3R_20375204_SNP [dm6]	T	A	3.534e^-4	0.817	INTERGENIC
2L	11832430	2L_11832430_INS [dm3] 2L_11832430_INS [dm6]	T	TT	3.535e^-4	0.817	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2754137	2R_2754137_SNP [dm3] 2R_6866632_SNP [dm6]	C	T	3.539e^-4	0.817	INTRON coro
3L	2048994	3L_2048994_SNP [dm3] 3L_2048994_SNP [dm6]	C	T	3.539e^-4	0.817	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
2L	5269255	2L_5269255_SNP [dm3] 2L_5269255_SNP [dm6]	G	A	3.545e^-4	0.817	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
3R	21945796	3R_21945796_SNP [dm3] 3R_26120074_SNP [dm6]	A	C	3.546e^-4	0.817	INTRON CG31324
2R	14575397	2R_14575397_SNP [dm3] 2R_18687892_SNP [dm6]	T	G	3.546e^-4	0.817	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14779469	2R_14779469_SNP [dm3] 2R_18891964_SNP [dm6]	G	A	3.548e^-4	0.817	INTRON sano
2R	5838549	2R_5838549_SNP [dm3] 2R_9951044_SNP [dm6]	T	C	3.548e^-4	0.817	INTRON Mef2
3L	11526445	3L_11526445_SNP [dm3] 3L_11533345_SNP [dm6]	G	A	3.550e^-4	0.817	INTRON Mob2
2L	18769251	2L_18769251_SNP [dm3] 2L_18769251_SNP [dm6]	T	G	3.551e^-4	0.817	INTRON ham
3L	5377551	3L_5377551_SNP [dm3] 3L_5384451_SNP [dm6]	G	T	3.554e^-4	0.817	INTERGENIC
X	20941887	X_20941887_SNP [dm3] X_21070860_SNP [dm6]	G	A	3.557e^-4	0.817	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16660575	2R_16660575_SNP [dm3] 2R_20773070_SNP [dm6]	G	T	3.558e^-4	0.817	UPSTREAM CG13443 INTERGENIC
2R	16660611	2R_16660611_INS [dm3] 2R_20773106_INS [dm6]	T	TAGAATGCTGCA...	3.558e^-4	0.817	UPSTREAM CG13443 INTERGENIC
2R	9609124	2R_9609124_SNP [dm3] 2R_13721619_SNP [dm6]	T	G	3.558e^-4	0.817	INTRON fas
3L	6798101	3L_6798101_SNP [dm3] 3L_6805001_SNP [dm6]	T	C	3.564e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
3L	14636336	3L_14636336_SNP [dm3] 3L_14643236_SNP [dm6]	G	C	3.568e^-4	0.817	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	15557857	2L_15557857_SNP [dm3] 2L_15557857_SNP [dm6]	T	A	3.568e^-4	0.817	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3755451	2L_3755451_DEL [dm3] 2L_3755451_DEL [dm6]	CAC	C	3.569e^-4	0.817	DOWNSTREAM CG10019 INTERGENIC
3R	9019292	3R_9019292_SNP [dm3] 3R_13193570_SNP [dm6]	C	A	3.575e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3702072	3L_3702072_INS [dm3] 3L_3702072_INS [dm6]	G	GG	3.576e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9227688	3L_9227688_SNP [dm3] 3L_9234588_SNP [dm6]	T	C	3.577e^-4	0.817	DOWNSTREAM CG4483 INTERGENIC
2L	8142512	2L_8142512_SNP [dm3] 2L_8142512_SNP [dm6]	C	A	3.585e^-4	0.817	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
3L	14854103	3L_14854103_SNP [dm3] 3L_14861003_SNP [dm6]	C	T	3.587e^-4	0.817	INTRON CG17839
2R	18775966	2R_18775966_SNP [dm3] 2R_22888443_SNP [dm6]	C	T	3.594e^-4	0.817	UPSTREAM MED23 DOWNSTREAM asrij INTRON Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6568640	2R_6568640_SNP [dm3] 2R_10681135_SNP [dm6]	C	G	3.597e^-4	0.817	INTRON stan	TF binding site mE1_TFBS_Trl
3L	12394330	3L_12394330_INS [dm3] 3L_12401230_INS [dm6]	G	GG	3.610e^-4	0.817	INTRON Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10965372	X_10965372_SNP [dm3] X_11071339_SNP [dm6]	C	T	3.617e^-4	0.817	DOWNSTREAM sev INTERGENIC
2L	15568624	2L_15568624_SNP [dm3] 2L_15568624_SNP [dm6]	A	G	3.621e^-4	0.817	INTRON kek3
3R	17471142	3R_17471142_SNP [dm3] 3R_21645420_SNP [dm6]	G	T	3.625e^-4	0.817	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7637036	2L_7637036_SNP [dm3] 2L_7637036_SNP [dm6]	C	T	3.628e^-4	0.817	DOWNSTREAM CR44799 EXON CR44800	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	5392354	X_5392354_SNP [dm3] X_5498321_SNP [dm6]	A	T	3.633e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7053848	3L_7053848_SNP [dm3] 3L_7060748_SNP [dm6]	A	G	3.636e^-4	0.817	INTRON CG8641
2R	5838673	2R_5838673_SNP [dm3] 2R_9951168_SNP [dm6]	T	A	3.638e^-4	0.817	INTRON Mef2
2L	11114452	2L_11114452_SNP [dm3] 2L_11114452_SNP [dm6]	C	T	3.643e^-4	0.817	SYNONYMOUS_CODING Gr32a	TF binding site mE1_TFBS_cad
3R	15951112	3R_15951112_SNP [dm3] 3R_20125390_SNP [dm6]	G	C	3.644e^-4	0.817	INTERGENIC
2R	14574525	2R_14574525_SNP [dm3] 2R_18687020_SNP [dm6]	T	A	3.645e^-4	0.817	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17318751	2R_17318751_SNP [dm3] 2R_21431246_SNP [dm6]	G	A	3.650e^-4	0.817	INTRON Sdc
X	14483663	X_14483663_SNP [dm3] X_14589630_SNP [dm6]	T	C	3.650e^-4	0.817	INTRON CG9413
3R	27835525	3R_27835525_SNP [dm3] 3R_32009803_SNP [dm6]	C	G	3.650e^-4	0.817	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	6989566	2L_6989566_SNP [dm3] 2L_6989566_SNP [dm6]	C	T	3.659e^-4	0.817	INTRON uif
3R	10734698	3R_10734698_SNP [dm3] 3R_14908976_SNP [dm6]	T	G	3.662e^-4	0.817	INTERGENIC
2R	16660624	2R_16660624_SNP [dm3] 2R_20773119_SNP [dm6]	G	A	3.663e^-4	0.817	UPSTREAM CG13443 INTERGENIC
3R	3025044	3R_3025044_SNP [dm3] 3R_7199322_SNP [dm6]	C	T	3.668e^-4	0.817	UTR_3_PRIME lap DOWNSTREAM lap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	3025054	3R_3025054_SNP [dm3] 3R_7199332_SNP [dm6]	C	T	3.668e^-4	0.817	UTR_3_PRIME lap DOWNSTREAM lap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14355736	3R_14355736_SNP [dm3] 3R_18530014_SNP [dm6]	C	T	3.678e^-4	0.818	INTRON fru
2L	12238110	2L_12238110_SNP [dm3] 2L_12238110_SNP [dm6]	A	G	3.684e^-4	0.819	INTRON aret
2R	5120631	2R_5120631_SNP [dm3] 2R_9233126_SNP [dm6]	C	T	3.699e^-4	0.82	INTRON hig	TF binding site mE1_TFBS_cad
3R	20316050	3R_20316050_SNP [dm3] 3R_24490328_SNP [dm6]	G	A	3.705e^-4	0.82	INTRON nAChRalpha2
2R	14575406	2R_14575406_INS [dm3] 2R_18687901_INS [dm6]	T	TAT	3.706e^-4	0.82	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20318271	2R_20318271_SNP [dm3] 2R_24430748_SNP [dm6]	C	A	3.710e^-4	0.82	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
3R	15946474	3R_15946474_SNP [dm3] 3R_20120752_SNP [dm6]	A	T	3.710e^-4	0.82	UPSTREAM Gr92a INTERGENIC
2L	21111466	2L_21111466_SNP [dm3] 2L_21111466_SNP [dm6]	G	C	3.724e^-4	0.822	INTRON Nhe2
2L	1932277	2L_1932277_SNP [dm3] 2L_1932277_SNP [dm6]	C	T	3.760e^-4	0.829	INTRON CG7337
3L	10704687	3L_10704687_SNP [dm3] 3L_10711587_SNP [dm6]	T	G	3.773e^-4	0.83	INTERGENIC
3R	16200835	3R_16200835_SNP [dm3] 3R_20375113_SNP [dm6]	A	T	3.776e^-4	0.83	INTERGENIC
3L	18182581	3L_18182581_SNP [dm3] 3L_18189481_SNP [dm6]	C	T	3.778e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10835209	2L_10835209_SNP [dm3] 2L_10835209_SNP [dm6]	A	G	3.783e^-4	0.83	INTRON Nos
3R	18575060	3R_18575060_SNP [dm3] 3R_22749338_SNP [dm6]	A	G	3.790e^-4	0.83	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna
3R	2600499	3R_2600499_SNP [dm3] 3R_6774777_SNP [dm6]	A	G	3.790e^-4	0.83	INTRON CR42721	TF binding site mE1_TFBS_cad
3R	3297914	3R_3297914_SNP [dm3] 3R_7472192_SNP [dm6]	A	T	3.796e^-4	0.83	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
2R	6644723	2R_6644723_SNP [dm3] 2R_10757218_SNP [dm6]	T	A	3.808e^-4	0.831	NON_SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16679089	2R_16679089_SNP [dm3] 2R_20791584_SNP [dm6]	C	G	3.823e^-4	0.831	UPSTREAM CG43677 INTRON CG43668
X	21119055	X_21119055_SNP [dm3] X_21248028_SNP [dm6]	C	T	3.837e^-4	0.831	INTRON CG32521
2L	15344499	2L_15344499_SNP [dm3] 2L_15344499_SNP [dm6]	G	A	3.842e^-4	0.831	INTERGENIC
2L	15557912	2L_15557912_SNP [dm3] 2L_15557912_SNP [dm6]	G	A	3.844e^-4	0.831	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1620926	2L_1620926_SNP [dm3] 2L_1620926_SNP [dm6]	A	T	3.847e^-4	0.831	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14734381	3L_14734381_SNP [dm3] 3L_14741281_SNP [dm6]	T	G	3.851e^-4	0.831	INTRON ome
X	20936725	X_20936725_SNP [dm3] X_21065698_SNP [dm6]	T	A	3.854e^-4	0.831	INTRON bves & 1 other
2R	14589399	2R_14589399_SNP [dm3] 2R_18701894_SNP [dm6]	A	T	3.855e^-4	0.831	DOWNSTREAM Sik3 INTRON Sik3
3R	3097978	3R_3097978_SNP [dm3] 3R_7272256_SNP [dm6]	C	G	3.855e^-4	0.831	DOWNSTREAM rn INTRON CG10032
3R	3097987	3R_3097987_SNP [dm3] 3R_7272265_SNP [dm6]	C	G	3.855e^-4	0.831	DOWNSTREAM rn INTRON CG10032
3R	15330166	3R_15330166_SNP [dm3] 3R_19504444_SNP [dm6]	C	A	3.861e^-4	0.831	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3878199	2L_3878199_SNP [dm3] 2L_3878199_SNP [dm6]	A	G	3.866e^-4	0.831	INTRON capu
2L	15825089	2L_15825089_SNP [dm3] 2L_15825089_SNP [dm6]	T	A	3.868e^-4	0.831	INTERGENIC
3L	2733994	3L_2733994_SNP [dm3] 3L_2733994_SNP [dm6]	C	A	3.873e^-4	0.831	INTRON Mrtf
X	15989793	X_15989793_SNP [dm3] X_16095760_SNP [dm6]	G	T	3.874e^-4	0.831	INTRON CG42354 & 1 other
2L	18180952	2L_18180952_SNP [dm3] 2L_18180952_SNP [dm6]	A	G	3.886e^-4	0.831	UTR_3_PRIME CG7180 DOWNSTREAM CG7180 INTRON CG42750
2R	10346457	2R_10346457_SNP [dm3] 2R_14458952_SNP [dm6]	G	A	3.892e^-4	0.831	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11104331	2L_11104331_SNP [dm3] 2L_11104331_SNP [dm6]	T	A	3.895e^-4	0.831	INTRON Reps
3L	19265524	3L_19265524_SNP [dm3] 3L_19272424_SNP [dm6]	G	A	3.897e^-4	0.831	SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3R	3058237	3R_3058237_SNP [dm3] 3R_7232515_SNP [dm6]	G	A	3.898e^-4	0.831	INTRON CG14608
3L	12760577	3L_12760577_SNP [dm3] 3L_12767477_SNP [dm6]	T	C	3.900e^-4	0.831	SYNONYMOUS_CODING CG32113 DOWNSTREAM Hip1
2R	13100945	2R_13100945_DEL [dm3] 2R_17213440_DEL [dm6]	ATAAG	A	3.907e^-4	0.831	INTERGENIC
2R	15328077	2R_15328077_SNP [dm3] 2R_19440572_SNP [dm6]	T	G	3.913e^-4	0.831	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	12785458	3R_12785458_SNP [dm3] 3R_16959736_SNP [dm6]	T	G	3.913e^-4	0.831	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11885984	3L_11885984_SNP [dm3] 3L_11892884_SNP [dm6]	T	A	3.915e^-4	0.831	INTRON CG44837
3R	15330964	3R_15330964_SNP [dm3] 3R_19505242_SNP [dm6]	T	C	3.923e^-4	0.831	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3303125	3R_3303125_SNP [dm3] 3R_7477403_SNP [dm6]	A	T	3.925e^-4	0.831	INTERGENIC
X	5745300	X_5745300_DEL [dm3] X_5851267_DEL [dm6]	TT	T	3.932e^-4	0.831	INTERGENIC
2R	20987988	2R_20987988_SNP [dm3] 2R_25100465_SNP [dm6]	A	C	3.946e^-4	0.833	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17189150	2R_17189150_SNP [dm3] 2R_21301645_SNP [dm6]	T	C	3.951e^-4	0.833	UPSTREAM CG42672 INTRON CG42672
3L	13385977	3L_13385977_SNP [dm3] 3L_13392877_SNP [dm6]	T	A	3.953e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13571604	2R_13571604_SNP [dm3] 2R_17684099_SNP [dm6]	C	A	3.956e^-4	0.833	UPSTREAM Sema-1b & 1 other INTRON HPS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3850578	2R_3850578_SNP [dm3] 2R_7963073_SNP [dm6]	T	C	3.967e^-4	0.833	SYNONYMOUS_CODING nito	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	20916697	3R_20916697_SNP [dm3] 3R_25090975_SNP [dm6]	C	T	3.975e^-4	0.833	INTERGENIC
3R	6459008	3R_6459008_DEL [dm3] 3R_10633286_DEL [dm6]	CC	C	3.988e^-4	0.833	INTRON hth	TF binding site mE1_TFBS_chinmo
3L	10025111	3L_10025111_DEL [dm3] 3L_10032011_DEL [dm6]	TT	T	3.990e^-4	0.833	INTRON dpr6
X	20938456	X_20938456_SNP [dm3] X_21067429_SNP [dm6]	C	T	3.995e^-4	0.833	UTR_5_PRIME CG32512 INTRON bves
2L	7161432	2L_7161432_SNP [dm3] 2L_7161432_SNP [dm6]	T	G	4.006e^-4	0.833	INTERGENIC
3R	3031436	3R_3031436_SNP [dm3] 3R_7205714_SNP [dm6]	G	A	4.008e^-4	0.833	INTERGENIC
3L	3817378	3L_3817378_SNP [dm3] 3L_3817378_SNP [dm6]	C	G	4.013e^-4	0.833	INTRON Scsalpha
2R	10756099	2R_10756099_SNP [dm3] 2R_14868594_SNP [dm6]	A	T	4.016e^-4	0.833	INTRON Inr-a	TF binding site mE1_TFBS_cad
3L	2733801	3L_2733801_SNP [dm3] 3L_2733801_SNP [dm6]	C	G	4.028e^-4	0.833	INTRON Mrtf
2R	14574475	2R_14574475_SNP [dm3] 2R_18686970_SNP [dm6]	G	A	4.029e^-4	0.833	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3715966	3R_3715966_INS [dm3] 3R_7890244_INS [dm6]	A	ACATAC	4.032e^-4	0.833	DOWNSTREAM CG10092 INTRON mRpS9
3R	2884046	3R_2884046_SNP [dm3] 3R_7058324_SNP [dm6]	A	G	4.038e^-4	0.833	UPSTREAM dj INTRON CG1979
2R	9926031	2R_9926031_SNP [dm3] 2R_14038526_SNP [dm6]	T	A	4.038e^-4	0.833	INTRON mam
3R	20569722	3R_20569722_SNP [dm3] 3R_24744000_SNP [dm6]	C	T	4.040e^-4	0.833	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
2L	12007440	2L_12007440_SNP [dm3] 2L_12007440_SNP [dm6]	A	C	4.049e^-4	0.833	UPSTREAM Rh5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	3298213	3R_3298213_SNP [dm3] 3R_7472491_SNP [dm6]	C	T	4.051e^-4	0.833	SYNONYMOUS_CODING CG1142 UPSTREAM tRNA:V3b:84Dc DOWNSTREAM scaRNA:MeU5-C46	TF binding site BDTNP1_TFBS_dl
3L	11887414	3L_11887414_SNP [dm3] 3L_11894314_SNP [dm6]	G	C	4.051e^-4	0.833	INTRON CG44837
2L	14979317	2L_14979317_SNP [dm3] 2L_14979317_SNP [dm6]	G	T	4.058e^-4	0.833	INTRON mol
3L	3909195	3L_3909195_SNP [dm3] 3L_3909195_SNP [dm6]	C	G	4.065e^-4	0.833	DOWNSTREAM Eip63F-1 INTRON mge	TF binding site mE1_TFBS_HSA
2L	1238932	2L_1238932_SNP [dm3] 2L_1238932_SNP [dm6]	A	G	4.066e^-4	0.833	INTERGENIC
2L	666201	2L_666201_SNP [dm3] 2L_666201_SNP [dm6]	T	A	4.067e^-4	0.833	INTRON ds	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2592593	3R_2592593_DEL [dm3] 3R_6766871_DEL [dm6]	AAAAATGTTGTCGAACTTTT...	A	4.069e^-4	0.833	UPSTREAM CR42721 DOWNSTREAM CR44930 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17915865	2L_17915865_DEL [dm3] 2L_17915865_DEL [dm6]	AG	A	4.083e^-4	0.833	UPSTREAM CG43271 INTERGENIC
3L	13386210	3L_13386210_SNP [dm3] 3L_13393110_SNP [dm6]	A	G	4.086e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	1244763	2L_1244763_SNP [dm3] 2L_1244763_SNP [dm6]	G	A	4.090e^-4	0.833	INTERGENIC
2L	4450825	2L_4450825_SNP [dm3] 2L_4450825_SNP [dm6]	A	T	4.091e^-4	0.833	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
2L	3960793	2L_3960793_SNP [dm3] 2L_3960793_SNP [dm6]	A	C	4.092e^-4	0.833	INTRON fred
3L	12467590	3L_12467590_SNP [dm3] 3L_12474490_SNP [dm6]	G	A	4.096e^-4	0.833	UTR_3_PRIME CG10663 DOWNSTREAM CG10663 & 1 other
2R	10344155	2R_10344155_SNP [dm3] 2R_14456650_SNP [dm6]	C	G	4.104e^-4	0.833	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16066768	2L_16066768_SNP [dm3] 2L_16066768_SNP [dm6]	T	C	4.105e^-4	0.833	INTRON beat-Ia
2R	4119812	2R_4119812_SNP [dm3] 2R_8232307_SNP [dm6]	G	T	4.107e^-4	0.833	UTR_5_PRIME dpn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2754134	2R_2754134_SNP [dm3] 2R_6866629_SNP [dm6]	C	T	4.109e^-4	0.833	INTRON coro
3R	25349881	3R_25349881_SNP [dm3] 3R_29524159_SNP [dm6]	G	A	4.119e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6100606	3R_6100606_SNP [dm3] 3R_10274884_SNP [dm6]	A	C	4.120e^-4	0.833	INTRON CG43143
3L	16746967	3L_16746967_SNP [dm3] 3L_16753867_SNP [dm6]	T	C	4.129e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17859837	3R_17859837_SNP [dm3] 3R_22034115_SNP [dm6]	A	C	4.130e^-4	0.833	SYNONYMOUS_CODING CG45099 UTR_5_PRIME CG6015 UPSTREAM pit & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14848828	2L_14848828_SNP [dm3] 2L_14848828_SNP [dm6]	A	G	4.132e^-4	0.833	SYNONYMOUS_CODING CG15279
2R	7985544	2R_7985544_SNP [dm3] 2R_12098039_SNP [dm6]	T	C	4.132e^-4	0.833	INTRON jeb
3L	17020085	3L_17020085_SNP [dm3] 3L_17026985_SNP [dm6]	C	T	4.152e^-4	0.833	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3L	15643517	3L_15643517_SNP [dm3] 3L_15650417_SNP [dm6]	C	T	4.158e^-4	0.833	UTR_3_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other
X	19346507	X_19346507_SNP [dm3] X_19452474_SNP [dm6]	C	A	4.158e^-4	0.833	INTRON kek5	TF binding site mE1_TFBS_chinmo
2L	15556586	2L_15556586_SNP [dm3] 2L_15556586_SNP [dm6]	A	C	4.158e^-4	0.833	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2600101	3R_2600101_DEL [dm3] 3R_6774379_DEL [dm6]	TCACTT	T	4.159e^-4	0.833	INTRON CR42721	TF binding site mE1_TFBS_cad
3L	7977706	3L_7977706_SNP [dm3] 3L_7984606_SNP [dm6]	T	C	4.160e^-4	0.833	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13228716	3L_13228716_SNP [dm3] 3L_13235616_SNP [dm6]	C	T	4.163e^-4	0.833	INTRON caps
3R	15330862	3R_15330862_SNP [dm3] 3R_19505140_SNP [dm6]	A	G	4.169e^-4	0.834	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10198728	2L_10198728_SNP [dm3] 2L_10198728_SNP [dm6]	T	A	4.180e^-4	0.835	START_GAINED Sur UTR_5_PRIME Sur DOWNSTREAM Ripalpha
3R	10605513	3R_10605513_SNP [dm3] 3R_14779791_SNP [dm6]	T	C	4.187e^-4	0.835	INTRON jvl
3L	2437470	3L_2437470_SNP [dm3] 3L_2437470_SNP [dm6]	G	A	4.192e^-4	0.835	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20440782	3L_20440782_SNP [dm3] 3L_20447682_SNP [dm6]	A	T	4.193e^-4	0.835	INTRON CG5910	enhancer mE1_CBP_Enhancers
2L	11116278	2L_11116278_SNP [dm3] 2L_11116278_SNP [dm6]	C	T	4.213e^-4	0.838	DOWNSTREAM Gr32a INTRON CG6230	TF binding site mE1_TFBS_cad
3R	23592020	3R_23592020_SNP [dm3] 3R_27766298_SNP [dm6]	C	T	4.219e^-4	0.838	INTERGENIC
3L	17737115	3L_17737115_SNP [dm3] 3L_17744015_SNP [dm6]	G	C	4.221e^-4	0.838	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	10831088	2R_10831088_SNP [dm3] 2R_14943583_SNP [dm6]	T	C	4.225e^-4	0.838	DOWNSTREAM aPKC INTRON CG10257
3R	17938440	3R_17938440_SNP [dm3] 3R_22112718_SNP [dm6]	C	G	4.235e^-4	0.838	UPSTREAM Ir94a INTERGENIC
X	7716795	X_7716795_DEL [dm3] X_7822762_DEL [dm6]	GTCATG	G	4.242e^-4	0.838	INTERGENIC
2R	18749420	2R_18749420_SNP [dm3] 2R_22861897_SNP [dm6]	G	A	4.255e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10198730	2L_10198730_SNP [dm3] 2L_10198730_SNP [dm6]	T	A	4.257e^-4	0.838	UTR_5_PRIME Sur DOWNSTREAM Ripalpha
3R	3078578	3R_3078578_SNP [dm3] 3R_7252856_SNP [dm6]	C	T	4.257e^-4	0.838	SYNONYMOUS_CODING Gld UPSTREAM Obp84a	TF binding site mE1_TFBS_cad
2L	16118088	2L_16118088_SNP [dm3] 2L_16118088_SNP [dm6]	T	A	4.259e^-4	0.838	INTERGENIC
3R	16707274	3R_16707274_SNP [dm3] 3R_20881552_SNP [dm6]	T	A	4.260e^-4	0.838	INTERGENIC
3L	17741195	3L_17741195_SNP [dm3] 3L_17748095_SNP [dm6]	A	G	4.260e^-4	0.838	UTR_3_PRIME Ccn DOWNSTREAM Adgf-B
3R	22167024	3R_22167024_SNP [dm3] 3R_26341302_SNP [dm6]	T	C	4.298e^-4	0.842	INTRON CG33970
X	16898701	X_16898701_SNP [dm3] X_17004668_SNP [dm6]	T	A	4.303e^-4	0.842	INTRON CG45002
2L	16548119	2L_16548119_SNP [dm3] 2L_16548119_SNP [dm6]	A	G	4.303e^-4	0.842	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	5269051	2L_5269051_SNP [dm3] 2L_5269051_SNP [dm6]	T	C	4.304e^-4	0.842	SPLICE_SITE_REGION Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3L	13386096	3L_13386096_MNP [dm3] 3L_13392996_MNP [dm6]	AGGT	CATC	4.307e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10316473	3R_10316473_DEL [dm3] 3R_14490751_DEL [dm6]	TT	T	4.309e^-4	0.842	INTERGENIC
2L	14979304	2L_14979304_SNP [dm3] 2L_14979304_SNP [dm6]	A	G	4.318e^-4	0.842	INTRON mol
3R	16522211	3R_16522211_SNP [dm3] 3R_20696489_SNP [dm6]	T	A	4.319e^-4	0.842	INTRON Oamb
3L	23548041	3L_23548041_SNP [dm3] 3L_23554941_SNP [dm6]	C	G	4.321e^-4	0.842	UPSTREAM AGO3 INTRON AGO3
2L	14870586	2L_14870586_SNP [dm3] 2L_14870586_SNP [dm6]	G	A	4.344e^-4	0.843	UTR_3_PRIME CG4480 DOWNSTREAM CG4480
2L	14674625	2L_14674625_SNP [dm3] 2L_14674625_SNP [dm6]	G	A	4.345e^-4	0.843	INTRON osp
2L	5582324	2L_5582324_SNP [dm3] 2L_5582324_SNP [dm6]	T	C	4.355e^-4	0.843	INTERGENIC
2L	11116286	2L_11116286_SNP [dm3] 2L_11116286_SNP [dm6]	C	A	4.356e^-4	0.843	DOWNSTREAM Gr32a INTRON CG6230	TF binding site mE1_TFBS_cad
3L	5984605	3L_5984605_SNP [dm3] 3L_5991505_SNP [dm6]	T	G	4.363e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3091183	3R_3091183_SNP [dm3] 3R_7265461_SNP [dm6]	T	G	4.376e^-4	0.843	UTR_5_PRIME Gld UPSTREAM Syt4
X	10891107	X_10891107_SNP [dm3] X_10997074_SNP [dm6]	G	C	4.380e^-4	0.843	INTRON CG42339
2L	20840917	2L_20840917_SNP [dm3] 2L_20840917_SNP [dm6]	T	G	4.381e^-4	0.843	UTR_5_PRIME CG31676	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8655020	3L_8655020_SNP [dm3] 3L_8661920_SNP [dm6]	G	T	4.389e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	12631022	3L_12631022_SNP [dm3] 3L_12637922_SNP [dm6]	A	G	4.392e^-4	0.843	INTRON CR32111
3R	27858372	3R_27858372_SNP [dm3] 3R_32032650_SNP [dm6]	A	G	4.395e^-4	0.843	INTERGENIC
X	2857152	X_2857152_SNP [dm3] X_2963119_SNP [dm6]	T	A	4.398e^-4	0.843	INTRON kirre & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25013528	3R_25013528_SNP [dm3] 3R_29187806_SNP [dm6]	C	T	4.400e^-4	0.843	INTRON CG14509
3L	7146090	3L_7146090_SNP [dm3] 3L_7152990_SNP [dm6]	T	A	4.402e^-4	0.843	INTRON corn
2R	10167480	2R_10167480_SNP [dm3] 2R_14279975_SNP [dm6]	A	T	4.405e^-4	0.843	INTRON Ih
2R	17554332	2R_17554332_SNP [dm3] 2R_21666827_SNP [dm6]	T	A	4.411e^-4	0.843	UTR_5_PRIME CG42365 DOWNSTREAM CG42362 & 6 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8179332	2R_8179332_SNP [dm3] 2R_12291827_SNP [dm6]	A	C	4.415e^-4	0.843	INTRON CG42700
X	15324194	X_15324194_SNP [dm3] X_15430161_SNP [dm6]	G	A	4.418e^-4	0.843	INTRON Cngl
3L	3010402	3L_3010402_SNP [dm3] 3L_3010402_SNP [dm6]	G	A	4.420e^-4	0.843	UTR_3_PRIME FMRFaR
2L	5594375	2L_5594375_SNP [dm3] 2L_5594375_SNP [dm6]	A	C	4.426e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14431610	2R_14431610_SNP [dm3] 2R_18544105_SNP [dm6]	C	G	4.428e^-4	0.843	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
2R	14574754	2R_14574754_SNP [dm3] 2R_18687249_SNP [dm6]	A	G	4.429e^-4	0.843	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9609131	2R_9609131_SNP [dm3] 2R_13721626_SNP [dm6]	G	A	4.433e^-4	0.843	INTRON fas
2R	14313870	2R_14313870_SNP [dm3] 2R_18426365_SNP [dm6]	A	T	4.435e^-4	0.843	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3310075	3R_3310075_SNP [dm3] 3R_7484353_SNP [dm6]	G	A	4.446e^-4	0.844	INTERGENIC
2L	5269057	2L_5269057_SNP [dm3] 2L_5269057_SNP [dm6]	A	G	4.452e^-4	0.844	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
2R	11650653	2R_11650653_SNP [dm3] 2R_15763148_SNP [dm6]	C	G	4.459e^-4	0.844	UTR_3_PRIME Zasp52
3L	3010404	3L_3010404_SNP [dm3] 3L_3010404_SNP [dm6]	C	T	4.465e^-4	0.844	UTR_3_PRIME FMRFaR
3R	12785400	3R_12785400_SNP [dm3] 3R_16959678_SNP [dm6]	C	T	4.467e^-4	0.844	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20563442	3L_20563442_SNP [dm3] 3L_20570342_SNP [dm6]	A	G	4.468e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5259553	X_5259553_DEL [dm3] X_5365520_DEL [dm6]	AC	A	4.471e^-4	0.844	UTR_5_PRIME SK INTRON SK
3R	15326379	3R_15326379_DEL [dm3] 3R_19500657_DEL [dm6]	TT	T	4.487e^-4	0.846	INTRON Dys
2R	18379571	2R_18379571_SNP [dm3] 2R_22492066_SNP [dm6]	T	C	4.491e^-4	0.846	UPSTREAM CG4610 DOWNSTREAM CG4554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10831074	2R_10831074_SNP [dm3] 2R_14943569_SNP [dm6]	T	C	4.506e^-4	0.846	DOWNSTREAM aPKC INTRON CG10257
3R	2595125	3R_2595125_SNP [dm3] 3R_6769403_SNP [dm6]	C	A	4.516e^-4	0.846	INTRON CR42721	TF binding site mE1_TFBS_cad
3L	12889923	3L_12889923_SNP [dm3] 3L_12896823_SNP [dm6]	G	C	4.519e^-4	0.846	INTERGENIC
3R	3307292	3R_3307292_SNP [dm3] 3R_7481570_SNP [dm6]	G	T	4.521e^-4	0.846	INTERGENIC

By genomic position
Variant impact
Gene name

Circadian_Per_MESA phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results