DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.287e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	7.2033	0.0273

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2239 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1582522	3L_1582522_INS [dm3] 3L_1582522_INS [dm6]	T	TATTCTCGATCT...	3.356e^-7	0.629	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20104928	2R_20104928_SNP [dm3] 2R_24217405_SNP [dm6]	T	A	2.187e^-6	0.71	INTRON CG30419
2R	12197239	2R_12197239_SNP [dm3] 2R_16309734_SNP [dm6]	C	A	2.396e^-6	0.71	SYNONYMOUS_CODING Nox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	13143609	3L_13143609_SNP [dm3] 3L_13150509_SNP [dm6]	T	C	2.553e^-6	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27068260	3R_27068260_SNP [dm3] 3R_31242538_SNP [dm6]	A	C	3.141e^-6	0.71	INTRON qless
3L	13429237	3L_13429237_SNP [dm3] 3L_13436137_SNP [dm6]	A	G	3.198e^-6	0.71	UPSTREAM CG10713 INTRON CG10154
3L	23099801	3L_23099801_SNP [dm3] 3L_23106701_SNP [dm6]	T	C	3.324e^-6	0.71	INTERGENIC	transposable element FlyBase
3L	1213732	3L_1213732_SNP [dm3] 3L_1213732_SNP [dm6]	C	T	3.580e^-6	0.71	DOWNSTREAM LysE INTRON mwh
3R	16522211	3R_16522211_SNP [dm3] 3R_20696489_SNP [dm6]	T	A	4.004e^-6	0.71	INTRON Oamb
2R	20104951	2R_20104951_SNP [dm3] 2R_24217428_SNP [dm6]	T	G	4.105e^-6	0.71	INTRON CG30419
3L	17384976	3L_17384976_SNP [dm3] 3L_17391876_SNP [dm6]	C	T	4.640e^-6	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19616496	2R_19616496_SNP [dm3] 2R_23728973_SNP [dm6]	T	C	5.032e^-6	0.71	INTRON Sesn
2R	20104911	2R_20104911_SNP [dm3] 2R_24217388_SNP [dm6]	A	T	5.614e^-6	0.71	INTRON CG30419
3R	25927536	3R_25927536_SNP [dm3] 3R_30101814_SNP [dm6]	A	C	5.797e^-6	0.71	INTRON sima
2R	18733175	2R_18733175_SNP [dm3] 2R_22845652_SNP [dm6]	A	G	6.543e^-6	0.71	UPSTREAM CG3649 INTERGENIC
2R	17097733	2R_17097733_SNP [dm3] 2R_21210228_SNP [dm6]	G	A	7.747e^-6	0.71	NON_SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	11064705	2L_11064705_SNP [dm3] 2L_11064705_SNP [dm6]	A	G	7.749e^-6	0.71	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10722606	2L_10722606_SNP [dm3] 2L_10722606_SNP [dm6]	T	A	7.759e^-6	0.71	INTERGENIC
3R	25339792	3R_25339792_SNP [dm3] 3R_29514070_SNP [dm6]	G	A	7.824e^-6	0.71	INTERGENIC
X	15897010	X_15897010_SNP [dm3] X_16002977_SNP [dm6]	G	A	8.866e^-6	0.71	SYNONYMOUS_CODING vap
3L	2122361	3L_2122361_SNP [dm3] 3L_2122361_SNP [dm6]	G	C	8.983e^-6	0.71	DOWNSTREAM zormin INTRON zormin
2L	10722605	2L_10722605_SNP [dm3] 2L_10722605_SNP [dm6]	A	T	9.294e^-6	0.71	INTERGENIC
X	2181049	X_2181049_SNP [dm3] X_2287016_SNP [dm6]	G	A	1.004e^-5	0.71	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	3620737	2R_3620737_DEL [dm3] 2R_7733232_DEL [dm6]	ATTAA	A	1.038e^-5	0.71	INTRON CG18812
2L	4197721	2L_4197721_SNP [dm3] 2L_4197721_SNP [dm6]	T	G	1.062e^-5	0.71	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	11064750	2L_11064750_SNP [dm3] 2L_11064750_SNP [dm6]	G	A	1.068e^-5	0.71	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15804960	2L_15804960_SNP [dm3] 2L_15804960_SNP [dm6]	T	C	1.109e^-5	0.71	INTERGENIC
3R	1455187	3R_1455187_SNP [dm3] 3R_5629465_SNP [dm6]	A	C	1.174e^-5	0.71	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6693733	2R_6693733_SNP [dm3] 2R_10806228_SNP [dm6]	G	A	1.180e^-5	0.71	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18571401	2R_18571401_SNP [dm3] 2R_22683896_SNP [dm6]	G	T	1.186e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	2198157	3L_2198157_SNP [dm3] 3L_2198157_SNP [dm6]	A	C	1.195e^-5	0.71	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2181053	X_2181053_SNP [dm3] X_2287020_SNP [dm6]	A	G	1.311e^-5	0.71	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	1.313e^-5	0.71	INTRON Oamb
3R	18421502	3R_18421502_SNP [dm3] 3R_22595780_SNP [dm6]	T	C	1.321e^-5	0.71	INTRON Efa6
3R	19491075	3R_19491075_SNP [dm3] 3R_23665353_SNP [dm6]	G	C	1.325e^-5	0.71	INTRON CG31145
3L	6099799	3L_6099799_SNP [dm3] 3L_6106699_SNP [dm6]	C	T	1.441e^-5	0.726	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	11064777	2L_11064777_SNP [dm3] 2L_11064777_SNP [dm6]	G	A	1.462e^-5	0.726	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18733143	2R_18733143_SNP [dm3] 2R_22845620_SNP [dm6]	G	A	1.480e^-5	0.726	UPSTREAM CG3649 INTERGENIC
2L	10722537	2L_10722537_SNP [dm3] 2L_10722537_SNP [dm6]	G	C	1.521e^-5	0.726	INTERGENIC
3R	14279635	3R_14279635_SNP [dm3] 3R_18453913_SNP [dm6]	C	T	1.642e^-5	0.726	INTRON fru
X	8529468	X_8529468_INS [dm3] X_8635435_INS [dm6]	G	GCCTG	1.684e^-5	0.726	INTRON oc	TF binding site BDTNP1_TFBS_dl
3R	24234829	3R_24234829_SNP [dm3] 3R_28409107_SNP [dm6]	T	C	1.722e^-5	0.726	INTERGENIC
3L	17384904	3L_17384904_SNP [dm3] 3L_17391804_SNP [dm6]	T	A	1.762e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
2L	3660691	2L_3660691_SNP [dm3] 2L_3660691_SNP [dm6]	T	G	1.773e^-5	0.726	INTERGENIC
3L	17384887	3L_17384887_DEL [dm3] 3L_17391787_DEL [dm6]	ATGTA	A	1.895e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
3R	15957464	3R_15957464_SNP [dm3] 3R_20131742_SNP [dm6]	A	T	1.978e^-5	0.726	INTERGENIC
2L	10722534	2L_10722534_SNP [dm3] 2L_10722534_SNP [dm6]	A	T	2.014e^-5	0.726	INTERGENIC
2L	10722546	2L_10722546_SNP [dm3] 2L_10722546_SNP [dm6]	C	A	2.014e^-5	0.726	INTERGENIC
2L	10722557	2L_10722557_SNP [dm3] 2L_10722557_SNP [dm6]	A	T	2.014e^-5	0.726	INTERGENIC
2L	9098239	2L_9098239_SNP [dm3] 2L_9098239_SNP [dm6]	A	C	2.037e^-5	0.726	DOWNSTREAM CG31609 INTERGENIC
3R	16492915	3R_16492915_SNP [dm3] 3R_20667193_SNP [dm6]	G	A	2.096e^-5	0.726	INTERGENIC
2R	18732933	2R_18732933_SNP [dm3] 2R_22845410_SNP [dm6]	A	G	2.156e^-5	0.726	UPSTREAM CG3649 INTERGENIC
3L	13429313	3L_13429313_SNP [dm3] 3L_13436213_SNP [dm6]	C	T	2.260e^-5	0.726	SPLICE_SITE_REGION CG10154 UPSTREAM CG10713 INTRON CG10154
3R	25927540	3R_25927540_SNP [dm3] 3R_30101818_SNP [dm6]	C	A	2.335e^-5	0.726	INTRON sima
3L	15701717	3L_15701717_SNP [dm3] 3L_15708617_SNP [dm6]	A	G	2.372e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12322466	2R_12322466_SNP [dm3] 2R_16434961_SNP [dm6]	G	A	2.382e^-5	0.726	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11718581	3R_11718581_SNP [dm3] 3R_15892859_SNP [dm6]	A	G	2.383e^-5	0.726	INTRON CG14877
3R	14719851	3R_14719851_SNP [dm3] 3R_18894129_SNP [dm6]	T	C	2.393e^-5	0.726	INTERGENIC
3L	23139005	3L_23139005_SNP [dm3] 3L_23145905_SNP [dm6]	C	A	2.445e^-5	0.726	INTERGENIC
3R	16492916	3R_16492916_SNP [dm3] 3R_20667194_SNP [dm6]	C	T	2.473e^-5	0.726	INTERGENIC
3R	1450109	3R_1450109_SNP [dm3] 3R_5624387_SNP [dm6]	G	A	2.532e^-5	0.726	UPSTREAM RpL13A & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	1539857	X_1539857_SNP [dm3] X_1645824_SNP [dm6]	A	T	2.537e^-5	0.726	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14828801	2R_14828801_SNP [dm3] 2R_18941296_SNP [dm6]	T	C	2.578e^-5	0.726	INTRON sano
3R	1452737	3R_1452737_SNP [dm3] 3R_5627015_SNP [dm6]	C	A	2.662e^-5	0.726	UPSTREAM CG31551 INTERGENIC
3R	27068247	3R_27068247_SNP [dm3] 3R_31242525_SNP [dm6]	A	C	2.675e^-5	0.726	INTRON qless
3L	1592669	3L_1592669_SNP [dm3] 3L_1592669_SNP [dm6]	T	C	2.803e^-5	0.726	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11265791	3L_11265791_SNP [dm3] 3L_11272691_SNP [dm6]	G	A	2.884e^-5	0.726	INTERGENIC
X	6093808	X_6093808_SNP [dm3] X_6199775_SNP [dm6]	C	T	2.923e^-5	0.726	DOWNSTREAM vanin-like INTRON CG43090
2L	3760045	2L_3760045_SNP [dm3] 2L_3760045_SNP [dm6]	C	T	2.985e^-5	0.726	UTR_5_PRIME CG43707 INTRON CG43707
3R	11710135	3R_11710135_SNP [dm3] 3R_15884413_SNP [dm6]	T	G	3.019e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18664391	2R_18664391_DEL [dm3] 2R_22776886_DEL [dm6]	GTGTTGCAG	G	3.040e^-5	0.726	INTRON CG42260
3R	15957455	3R_15957455_SNP [dm3] 3R_20131733_SNP [dm6]	A	T	3.062e^-5	0.726	INTERGENIC
3R	12679491	3R_12679491_SNP [dm3] 3R_16853769_SNP [dm6]	A	C	3.096e^-5	0.726	INTRON iab-8 & 1 other EXON iab-4
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	3.164e^-5	0.726	INTRON Oamb
3L	23093821	3L_23093821_DEL [dm3] 3L_23100721_DEL [dm6]	CGTATCGAG	T	3.193e^-5	0.726	UPSTREAM CkIIalpha INTRON CkIIalpha
3L	17384873	3L_17384873_SNP [dm3] 3L_17391773_SNP [dm6]	T	C	3.288e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_kn
X	15896804	X_15896804_SNP [dm3] X_16002771_SNP [dm6]	A	G	3.301e^-5	0.726	INTRON vap
2R	14997111	2R_14997111_SNP [dm3] 2R_19109606_SNP [dm6]	C	T	3.447e^-5	0.726	INTRON 5-HT1A
2R	10090150	2R_10090150_SNP [dm3] 2R_14202645_SNP [dm6]	T	C	3.490e^-5	0.726	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3434513	X_3434513_SNP [dm3] X_3540480_SNP [dm6]	G	A	3.527e^-5	0.726	INTRON CG32791
3L	23140474	3L_23140474_SNP [dm3] 3L_23147374_SNP [dm6]	C	G	3.569e^-5	0.726	DOWNSTREAM CG32350 INTERGENIC	transposable element FlyBase
3L	2122369	3L_2122369_SNP [dm3] 3L_2122369_SNP [dm6]	T	G	3.582e^-5	0.726	DOWNSTREAM zormin INTRON zormin
X	18414759	X_18414759_SNP [dm3] X_18520726_SNP [dm6]	C	A	3.607e^-5	0.726	UTR_5_PRIME Bx DOWNSTREAM CG6481 & 1 other
3R	11710095	3R_11710095_SNP [dm3] 3R_15884373_SNP [dm6]	G	C	3.617e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8730125	2R_8730125_INS [dm3] 2R_12842620_INS [dm6]	A	AT	3.624e^-5	0.726	UPSTREAM Or49b & 1 other INTERGENIC
3L	14851427	3L_14851427_SNP [dm3] 3L_14858327_SNP [dm6]	G	C	3.662e^-5	0.726	INTRON CG17839
X	10847678	X_10847678_SNP [dm3] X_10953645_SNP [dm6]	T	C	3.815e^-5	0.726	UPSTREAM Myo10A INTRON Myo10A
2R	10090147	2R_10090147_SNP [dm3] 2R_14202642_SNP [dm6]	T	C	3.859e^-5	0.726	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19100728	2R_19100728_DEL [dm3] 2R_23213205_DEL [dm6]	TCAATAAAAGTGTT...	T	3.905e^-5	0.726	INTERGENIC
X	4103583	X_4103583_SNP [dm3] X_4209550_SNP [dm6]	G	T	3.923e^-5	0.726	INTERGENIC
2R	8552061	2R_8552061_SNP [dm3] 2R_12664556_SNP [dm6]	G	A	3.966e^-5	0.726	INTRON nemy
3L	10691838	3L_10691838_SNP [dm3] 3L_10698738_SNP [dm6]	A	G	3.968e^-5	0.726	INTERGENIC
X	15896888	X_15896888_SNP [dm3] X_16002855_SNP [dm6]	C	A	4.096e^-5	0.726	INTRON vap
2L	768180	2L_768180_SNP [dm3] 2L_768180_SNP [dm6]	G	T	4.119e^-5	0.726	INTERGENIC
2R	17024252	2R_17024252_SNP [dm3] 2R_21136747_SNP [dm6]	C	T	4.205e^-5	0.726	INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5893684	3R_5893684_SNP [dm3] 3R_10067962_SNP [dm6]	C	T	4.218e^-5	0.726	NON_SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
2L	10722478	2L_10722478_SNP [dm3] 2L_10722478_SNP [dm6]	A	T	4.312e^-5	0.726	INTERGENIC
3R	15957390	3R_15957390_SNP [dm3] 3R_20131668_SNP [dm6]	A	G	4.341e^-5	0.726	INTERGENIC
2R	18714942	2R_18714942_SNP [dm3] 2R_22827419_SNP [dm6]	G	A	4.395e^-5	0.726	INTRON CG30274 & 1 other
2R	19122168	2R_19122168_SNP [dm3] 2R_23234645_SNP [dm6]	G	A	4.482e^-5	0.726	DOWNSTREAM CG3092 INTERGENIC

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.038e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.05734

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.4002	0.0672
In_3R_P	9.1422	0.0103

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2140 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	5433045	3L_5433045_SNP [dm3] 3L_5439945_SNP [dm6]	G	A	1.637e^-7	0.072	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
X	8552865	X_8552865_SNP [dm3] X_8658832_SNP [dm6]	T	A	1.892e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552784	X_8552784_SNP [dm3] X_8658751_SNP [dm6]	A	T	2.762e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552725	X_8552725_SNP [dm3] X_8658692_SNP [dm6]	T	C	2.860e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552872	X_8552872_SNP [dm3] X_8658839_SNP [dm6]	T	G	3.218e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	18381047	2L_18381047_SNP [dm3] 2L_18381047_SNP [dm6]	G	A	3.307e^-7	0.072	INTRON Fas3
X	8552892	X_8552892_SNP [dm3] X_8658859_SNP [dm6]	G	A	3.821e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552866	X_8552866_DEL [dm3] X_8658833_DEL [dm6]	AAG	A	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552877	X_8552877_DEL [dm3] X_8658844_DEL [dm6]	GAAGT	G	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552886	X_8552886_MNP [dm3] X_8658853_MNP [dm6]	GAG	AGA	4.000e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8552782	X_8552782_SNP [dm3] X_8658749_SNP [dm6]	A	T	4.221e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552775	X_8552775_SNP [dm3] X_8658742_SNP [dm6]	C	A	4.582e^-7	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	5.623e^-7	0.081	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8552862	X_8552862_SNP [dm3] X_8658829_SNP [dm6]	G	T	1.398e^-6	0.154	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12279333	3R_12279333_SNP [dm3] 3R_16453611_SNP [dm6]	G	T	1.426e^-6	0.154	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279648	3R_12279648_SNP [dm3] 3R_16453926_SNP [dm6]	A	T	1.426e^-6	0.154	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12276081	3R_12276081_SNP [dm3] 3R_16450359_SNP [dm6]	G	T	1.477e^-6	0.154	INTRON Pak3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279507	3R_12279507_SNP [dm3] 3R_16453785_SNP [dm6]	G	C	1.512e^-6	0.154	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279649	3R_12279649_SNP [dm3] 3R_16453927_SNP [dm6]	A	T	1.564e^-6	0.154	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15559469	2L_15559469_SNP [dm3] 2L_15559469_SNP [dm6]	A	G	2.627e^-6	0.246	INTRON kek3
2L	15557665	2L_15557665_SNP [dm3] 2L_15557665_SNP [dm6]	C	T	3.653e^-6	0.326	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18623067	2L_18623067_SNP [dm3] 2L_18623067_SNP [dm6]	A	G	4.130e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	18623115	2L_18623115_SNP [dm3] 2L_18623115_SNP [dm6]	G	C	4.379e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	18623601	2L_18623601_SNP [dm3] 2L_18623601_SNP [dm6]	T	G	4.380e^-6	0.342	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16812446	X_16812446_SNP [dm3] X_16918413_SNP [dm6]	C	G	4.743e^-6	0.356	INTRON CG4928
2L	18623342	2L_18623342_SNP [dm3] 2L_18623342_SNP [dm6]	C	T	5.981e^-6	0.398	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
X	14469384	X_14469384_SNP [dm3] X_14575351_SNP [dm6]	G	A	6.019e^-6	0.398	INTERGENIC
3R	21097050	3R_21097050_SNP [dm3] 3R_25271328_SNP [dm6]	T	A	6.097e^-6	0.398	UPSTREAM CG11891 INTRON CG11889 & 1 other
3R	16168961	3R_16168961_SNP [dm3] 3R_20343239_SNP [dm6]	C	A	6.150e^-6	0.398	INTRON Ir92a
3R	12270408	3R_12270408_SNP [dm3] 3R_16444686_SNP [dm6]	A	T	6.469e^-6	0.404	NON_SYNONYMOUS_CODING CG14882 DOWNSTREAM Pak3
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	7.059e^-6	0.427	DOWNSTREAM aPKC INTRON CG10257
3R	2616217	3R_2616217_SNP [dm3] 3R_6790495_SNP [dm6]	C	T	7.958e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	15710745	X_15710745_SNP [dm3] X_15816712_SNP [dm6]	T	G	7.961e^-6	0.432	INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21111449	X_21111449_SNP [dm3] X_21240422_SNP [dm6]	T	C	8.035e^-6	0.432	INTRON CG32521
3L	11884715	3L_11884715_SNP [dm3] 3L_11891615_SNP [dm6]	A	T	8.056e^-6	0.432	INTRON CG44837
3L	11537771	3L_11537771_SNP [dm3] 3L_11544671_SNP [dm6]	T	C	9.550e^-6	0.498	INTRON Mob2
3R	12271487	3R_12271487_SNP [dm3] 3R_16445765_SNP [dm6]	C	G	1.081e^-5	0.545	UTR_3_PRIME Pak3 DOWNSTREAM CG14882 & 1 other
2L	15557797	2L_15557797_SNP [dm3] 2L_15557797_SNP [dm6]	G	A	1.108e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17080807	3R_17080807_SNP [dm3] 3R_21255085_SNP [dm6]	G	T	1.153e^-5	0.545	INTRON ETHR
2L	14852125	2L_14852125_SNP [dm3] 2L_14852125_SNP [dm6]	C	A	1.207e^-5	0.545	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14851961	2L_14851961_INS [dm3] 2L_14851961_INS [dm6]	A	AATGC	1.209e^-5	0.545	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15557729	2L_15557729_SNP [dm3] 2L_15557729_SNP [dm6]	C	T	1.223e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15557649	2L_15557649_DEL [dm3] 2L_15557649_DEL [dm6]	GAAC	CGT	1.258e^-5	0.545	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5125487	2R_5125487_SNP [dm3] 2R_9237982_SNP [dm6]	T	C	1.307e^-5	0.545	SYNONYMOUS_CODING Cyp4p2 INTRON hig
3R	11126463	3R_11126463_INS [dm3] 3R_15300741_INS [dm6]	C	CC	1.308e^-5	0.545	SPLICE_SITE_REGION Tm1 INTRON Tm1
3R	7142674	3R_7142674_SNP [dm3] 3R_11316952_SNP [dm6]	G	C	1.389e^-5	0.558	INTERGENIC
X	14475330	X_14475330_SNP [dm3] X_14581297_SNP [dm6]	A	G	1.399e^-5	0.558	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
2R	16677959	2R_16677959_SNP [dm3] 2R_20790454_SNP [dm6]	T	A	1.500e^-5	0.565	UTR_3_PRIME CG43677 UPSTREAM CG43667
2R	10825235	2R_10825235_SNP [dm3] 2R_14937730_SNP [dm6]	C	G	1.523e^-5	0.565	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2L	15885372	2L_15885372_SNP [dm3] 2L_15885372_SNP [dm6]	T	C	1.525e^-5	0.565	INTERGENIC
2L	11833549	2L_11833549_DEL [dm3] 2L_11833549_DEL [dm6]	ATTTAAATAA	A	1.537e^-5	0.565	UPSTREAM CG45011 INTRON Pde1c
2L	1595022	2L_1595022_INS [dm3] 2L_1595022_INS [dm6]	T	TA	1.608e^-5	0.57	UTR_3_PRIME CG31935 INTRON haf
2L	906539	2L_906539_SNP [dm3] 2L_906539_SNP [dm6]	G	A	1.649e^-5	0.57	INTERGENIC
3L	12706512	3L_12706512_SNP [dm3] 3L_12713412_SNP [dm6]	G	A	1.684e^-5	0.57	INTERGENIC
2R	10825241	2R_10825241_SNP [dm3] 2R_14937736_SNP [dm6]	C	T	1.711e^-5	0.57	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
X	12249519	X_12249519_SNP [dm3] X_12355486_SNP [dm6]	A	G	1.751e^-5	0.57	INTERGENIC
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	1.766e^-5	0.57	INTRON Tgi
2L	15557740	2L_15557740_SNP [dm3] 2L_15557740_SNP [dm6]	G	A	1.774e^-5	0.57	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15557782	2L_15557782_SNP [dm3] 2L_15557782_SNP [dm6]	G	A	1.816e^-5	0.57	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15861923	3L_15861923_SNP [dm3] 3L_15868823_SNP [dm6]	T	C	1.823e^-5	0.57	INTRON pHCl
2L	14852123	2L_14852123_SNP [dm3] 2L_14852123_SNP [dm6]	A	C	1.981e^-5	0.589	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22098264	X_22098264_SNP [dm3] X_22696428_SNP [dm6]	C	T	2.013e^-5	0.589	INTRON CR44997
2L	15559445	2L_15559445_SNP [dm3] 2L_15559445_SNP [dm6]	C	T	2.110e^-5	0.589	INTRON kek3
3L	12706525	3L_12706525_SNP [dm3] 3L_12713425_SNP [dm6]	T	A	2.110e^-5	0.589	INTERGENIC
3R	12098034	3R_12098034_SNP [dm3] 3R_16272312_SNP [dm6]	A	G	2.201e^-5	0.589	NON_SYNONYMOUS_CODING Mat89Ba UPSTREAM gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15306660	3R_15306660_INS [dm3] 3R_19480938_INS [dm6]	T	TTT	2.239e^-5	0.589	INTRON Dys	TF binding site mE1_TFBS_sens
2R	17864226	2R_17864226_SNP [dm3] 2R_21976721_SNP [dm6]	C	T	2.246e^-5	0.589	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
2L	11008900	2L_11008900_SNP [dm3] 2L_11008900_SNP [dm6]	T	C	2.274e^-5	0.589	DOWNSTREAM Art8 INTRON Nup154
X	11917686	X_11917686_SNP [dm3] X_12023653_SNP [dm6]	C	T	2.305e^-5	0.589	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
2L	14852137	2L_14852137_SNP [dm3] 2L_14852137_SNP [dm6]	A	C	2.336e^-5	0.589	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	11917685	X_11917685_SNP [dm3] X_12023652_SNP [dm6]	A	T	2.346e^-5	0.589	UTR_3_PRIME Usp7 DOWNSTREAM Tango4
2L	19792506	2L_19792506_SNP [dm3] 2L_19792506_SNP [dm6]	C	A	2.355e^-5	0.589	UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43 INTRON CG10466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15397811	3R_15397811_SNP [dm3] 3R_19572089_SNP [dm6]	T	A	2.386e^-5	0.589	INTRON Dys
3R	15333675	3R_15333675_SNP [dm3] 3R_19507953_SNP [dm6]	G	T	2.424e^-5	0.589	INTRON Dys
3L	7301002	3L_7301002_SNP [dm3] 3L_7307902_SNP [dm6]	C	A	2.427e^-5	0.589	INTRON unc-13-4A
3R	13963473	3R_13963473_SNP [dm3] 3R_18137751_SNP [dm6]	A	G	2.448e^-5	0.589	INTERGENIC
3R	13250995	3R_13250995_SNP [dm3] 3R_17425273_SNP [dm6]	C	A	2.449e^-5	0.589	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	12706516	3L_12706516_SNP [dm3] 3L_12713416_SNP [dm6]	T	G	2.449e^-5	0.589	INTERGENIC
3L	11538220	3L_11538220_SNP [dm3] 3L_11545120_SNP [dm6]	G	A	2.598e^-5	0.617	INTRON Mob2
3L	13228633	3L_13228633_SNP [dm3] 3L_13235533_SNP [dm6]	T	A	2.646e^-5	0.62	INTRON caps
2R	16679143	2R_16679143_SNP [dm3] 2R_20791638_SNP [dm6]	C	G	2.763e^-5	0.635	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
3R	2622675	3R_2622675_SNP [dm3] 3R_6796953_SNP [dm6]	C	T	2.797e^-5	0.635	INTRON Dfd	TF binding site mE1_TFBS_cnc
2L	14852138	2L_14852138_SNP [dm3] 2L_14852138_SNP [dm6]	C	A	2.870e^-5	0.635	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14852148	2L_14852148_SNP [dm3] 2L_14852148_SNP [dm6]	T	A	2.872e^-5	0.635	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10835193	2L_10835193_SNP [dm3] 2L_10835193_SNP [dm6]	A	G	2.876e^-5	0.635	INTRON Nos
3R	2916101	3R_2916101_SNP [dm3] 3R_7090379_SNP [dm6]	C	T	2.916e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1 transposable element FlyBase
2L	14852126	2L_14852126_SNP [dm3] 2L_14852126_SNP [dm6]	G	T	2.983e^-5	0.639	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14592284	3R_14592284_SNP [dm3] 3R_18766562_SNP [dm6]	G	A	3.000e^-5	0.639	INTRON CG7720
3L	16019568	3L_16019568_SNP [dm3] 3L_16026468_SNP [dm6]	C	T	3.050e^-5	0.641	INTRON Notum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16679041	2R_16679041_SNP [dm3] 2R_20791536_SNP [dm6]	C	T	3.091e^-5	0.641	UTR_3_PRIME CG43668 UPSTREAM CG43677
3R	2595257	3R_2595257_SNP [dm3] 3R_6769535_SNP [dm6]	G	A	3.108e^-5	0.641	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	1659171	2L_1659171_SNP [dm3] 2L_1659171_SNP [dm6]	G	T	3.179e^-5	0.641	INTRON chinmo
2R	16677943	2R_16677943_SNP [dm3] 2R_20790438_SNP [dm6]	G	T	3.236e^-5	0.641	UTR_3_PRIME CG43677 UPSTREAM CG43667
2R	14453838	2R_14453838_SNP [dm3] 2R_18566333_SNP [dm6]	G	T	3.254e^-5	0.641	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21075779	X_21075779_DEL [dm3] X_21204752_DEL [dm6]	ATG	A	3.255e^-5	0.641	DOWNSTREAM CG32521 INTERGENIC
2R	16678949	2R_16678949_SNP [dm3] 2R_20791444_SNP [dm6]	G	A	3.283e^-5	0.641	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
3R	27832814	3R_27832814_SNP [dm3] 3R_32007092_SNP [dm6]	A	C	3.347e^-5	0.642	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14851583	2L_14851583_SNP [dm3] 2L_14851583_SNP [dm6]	A	T	3.353e^-5	0.642	UTR_5_PRIME CG15279	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16679043	2R_16679043_SNP [dm3] 2R_20791538_SNP [dm6]	A	T	3.637e^-5	0.672	UTR_3_PRIME CG43668 UPSTREAM CG43677
X	5001494	X_5001494_SNP [dm3] X_5107461_SNP [dm6]	T	C	3.691e^-5	0.672	INTRON rg & 1 other

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By genomic position
Variant impact
Gene name

Circadian_Per_MESA phenotype

Phenotype distribution and association to known covariates

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Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results