DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.463e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.0165	0.011
In_2R_NS	19.5278	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

12831 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6950390	2L_6950390_SNP [dm3] 2L_6950390_SNP [dm6]	G	T	1.841e^-236	3.087e^-231	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12494447	2R_12494447_SNP [dm3] 2R_16606942_SNP [dm6]	G	A	1.841e^-236	3.087e^-231	UPSTREAM CG5065 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12735477	2R_12735477_SNP [dm3] 2R_16847972_SNP [dm6]	T	A	1.841e^-236	3.087e^-231	INTERGENIC
2R	13717819	2R_13717819_SNP [dm3] 2R_17830314_SNP [dm6]	T	A	1.841e^-236	3.087e^-231	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	13832495	2R_13832495_SNP [dm3] 2R_17944990_SNP [dm6]	A	T	1.841e^-236	3.087e^-231	INTERGENIC
2R	14834678	2R_14834678_SNP [dm3] 2R_18947173_SNP [dm6]	T	C	1.841e^-236	3.087e^-231	UPSTREAM sano INTRON sano	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14935448	2R_14935448_SNP [dm3] 2R_19047943_SNP [dm6]	G	T	1.841e^-236	3.087e^-231	INTERGENIC
2R	14937752	2R_14937752_SNP [dm3] 2R_19050247_SNP [dm6]	T	C	1.841e^-236	3.087e^-231	INTERGENIC
2R	15903946	2R_15903946_SNP [dm3] 2R_20016441_SNP [dm6]	G	A	1.841e^-236	3.087e^-231	DOWNSTREAM CR44630 INTERGENIC
2R	16001369	2R_16001369_SNP [dm3] 2R_20113864_SNP [dm6]	A	G	1.841e^-236	3.087e^-231	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	17551819	2R_17551819_SNP [dm3] 2R_21664314_SNP [dm6]	T	C	1.841e^-236	3.087e^-231	UTR_5_PRIME CG42362 & 1 other UPSTREAM CG42362 & 1 other DOWNSTREAM CR44748	TF binding site mE1_TFBS_inv
3L	505318	3L_505318_SNP [dm3] 3L_505318_SNP [dm6]	G	A	8.965e^-230	1.103e^-224	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	24824677	3R_24824677_SNP [dm3] 3R_28998955_SNP [dm6]	C	A	8.965e^-230	1.103e^-224	INTRON wat
3R	24824726	3R_24824726_SNP [dm3] 3R_28999004_SNP [dm6]	C	G	8.965e^-230	1.103e^-224	INTRON wat
3R	7555231	3R_7555231_SNP [dm3] 3R_11729509_SNP [dm6]	C	G	8.965e^-230	1.103e^-224	SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad
2L	12929080	2L_12929080_SNP [dm3] 2L_12929080_SNP [dm6]	C	T	6.347e^-228	3.573e^-223	SYNONYMOUS_CODING ACXE
2L	10083219	2L_10083219_SNP [dm3] 2L_10083219_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTRON CG44153
2L	10083220	2L_10083220_SNP [dm3] 2L_10083220_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	INTRON CG44153
2L	11911448	2L_11911448_DEL [dm3] 2L_11911448_DEL [dm6]	ATA	A	1.395e^-227	3.573e^-223	INTRON Pde1c
2L	11911461	2L_11911461_SNP [dm3] 2L_11911461_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTRON Pde1c
2L	12397755	2L_12397755_SNP [dm3] 2L_12397755_SNP [dm6]	G	C	1.395e^-227	3.573e^-223	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2L	12947093	2L_12947093_SNP [dm3] 2L_12947093_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTERGENIC
2L	13134372	2L_13134372_SNP [dm3] 2L_13134372_SNP [dm6]	G	C	1.395e^-227	3.573e^-223	SYNONYMOUS_CODING CG5122
2L	17287740	2L_17287740_SNP [dm3] 2L_17287740_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	DOWNSTREAM CG15140 INTERGENIC
2L	17289734	2L_17289734_SNP [dm3] 2L_17289734_SNP [dm6]	G	C	1.395e^-227	3.573e^-223	INTERGENIC
2L	17298448	2L_17298448_SNP [dm3] 2L_17298448_SNP [dm6]	A	C	1.395e^-227	3.573e^-223	INTERGENIC
2L	17300392	2L_17300392_SNP [dm3] 2L_17300392_SNP [dm6]	A	G	1.395e^-227	3.573e^-223	INTERGENIC
2L	17300403	2L_17300403_SNP [dm3] 2L_17300403_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTERGENIC
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302602	2L_17302602_SNP [dm3] 2L_17302602_SNP [dm6]	T	A	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302629	2L_17302629_SNP [dm3] 2L_17302629_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17303312	2L_17303312_SNP [dm3] 2L_17303312_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTERGENIC
2L	17307667	2L_17307667_SNP [dm3] 2L_17307667_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	INTERGENIC
2L	17308165	2L_17308165_SNP [dm3] 2L_17308165_SNP [dm6]	A	G	1.395e^-227	3.573e^-223	INTERGENIC
2L	17320165	2L_17320165_SNP [dm3] 2L_17320165_SNP [dm6]	C	T	1.395e^-227	3.573e^-223	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC
2L	17328205	2L_17328205_SNP [dm3] 2L_17328205_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17328400	2L_17328400_SNP [dm3] 2L_17328400_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17328407	2L_17328407_SNP [dm3] 2L_17328407_SNP [dm6]	T	A	1.395e^-227	3.573e^-223	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21009474	2L_21009474_SNP [dm3] 2L_21009474_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	INTRON CG42238	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	21118215	2L_21118215_SNP [dm3] 2L_21118215_SNP [dm6]	C	G	1.395e^-227	3.573e^-223	INTRON Nhe2
2L	7603569	2L_7603569_SNP [dm3] 2L_7603569_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	UPSTREAM CR45370 INTERGENIC
2L	9287980	2L_9287980_SNP [dm3] 2L_9287980_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTRON Ggamma30A
2L	9288437	2L_9288437_SNP [dm3] 2L_9288437_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTRON Ggamma30A
2R	10913638	2R_10913638_SNP [dm3] 2R_15026133_SNP [dm6]	T	A	1.395e^-227	3.573e^-223	DOWNSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12400062	2R_12400062_SNP [dm3] 2R_16512557_SNP [dm6]	T	G	1.395e^-227	3.573e^-223	INTRON Sema-2a
2R	12524025	2R_12524025_SNP [dm3] 2R_16636520_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13833218	2R_13833218_SNP [dm3] 2R_17945713_SNP [dm6]	C	G	1.395e^-227	3.573e^-223	INTERGENIC
2R	16908009	2R_16908009_DEL [dm3] 2R_21020504_DEL [dm6]	AAA	A	1.395e^-227	3.573e^-223	INTRON RIC-3
2R	16908016	2R_16908016_SNP [dm3] 2R_21020511_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	INTRON RIC-3
2R	18895823	2R_18895823_INS [dm3] 2R_23008300_INS [dm6]	A	ACATACATA	1.395e^-227	3.573e^-223	INTRON twi	TF binding site mE1_TFBS_chinmo
2R	3654852	2R_3654852_SNP [dm3] 2R_7767347_SNP [dm6]	A	T	1.395e^-227	3.573e^-223	INTRON CG30497 & 1 other
2R	3658371	2R_3658371_SNP [dm3] 2R_7770866_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	INTRON CG30497 & 1 other
2R	7296150	2R_7296150_SNP [dm3] 2R_11408645_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
2R	7296155	2R_7296155_SNP [dm3] 2R_11408650_SNP [dm6]	C	T	1.395e^-227	3.573e^-223	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
3L	7021362	3L_7021362_SNP [dm3] 3L_7028262_SNP [dm6]	G	T	1.395e^-227	3.573e^-223	INTRON Mp
3L	7021363	3L_7021363_SNP [dm3] 3L_7028263_SNP [dm6]	T	A	1.395e^-227	3.573e^-223	INTRON Mp
3L	7021364	3L_7021364_INS [dm3] 3L_7028264_INS [dm6]	T	TAG	1.395e^-227	3.573e^-223	INTRON Mp
3L	9233509	3L_9233509_SNP [dm3] 3L_9240409_SNP [dm6]	G	A	1.395e^-227	3.573e^-223	INTERGENIC
3R	16721079	3R_16721079_INS [dm3] 3R_20895357_INS [dm6]	T	TGGTAAAAGATGATCGCATT...	1.395e^-227	3.573e^-223	UTR_3_PRIME CG10830
3R	16721106	3R_16721106_INS [dm3] 3R_20895384_INS [dm6]	A	ACG	1.395e^-227	3.573e^-223	UTR_3_PRIME CG10830
3R	16721133	3R_16721133_SNP [dm3] 3R_20895411_SNP [dm6]	A	C	1.395e^-227	3.573e^-223	UTR_3_PRIME CG10830
3R	19468196	3R_19468196_SNP [dm3] 3R_23642474_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	INTRON CG31145	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21617514	3R_21617514_SNP [dm3] 3R_25791792_SNP [dm6]	C	A	1.395e^-227	3.573e^-223	DOWNSTREAM CR43632 EXON CR43631
3R	23729652	3R_23729652_SNP [dm3] 3R_27903930_SNP [dm6]	C	T	1.395e^-227	3.573e^-223	INTRON CG34353
3R	23747395	3R_23747395_SNP [dm3] 3R_27921673_SNP [dm6]	A	G	1.395e^-227	3.573e^-223	SYNONYMOUS_CODING BCAS2 UPSTREAM CG12259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23751698	3R_23751698_SNP [dm3] 3R_27925976_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	SYNONYMOUS_CODING mino UPSTREAM CR45566	TF binding site BDTNP1_TFBS_dl
3R	23760763	3R_23760763_SNP [dm3] 3R_27935041_SNP [dm6]	C	T	1.395e^-227	3.573e^-223	NON_SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23969600	3R_23969600_SNP [dm3] 3R_28143878_SNP [dm6]	C	G	1.395e^-227	3.573e^-223	INTERGENIC
X	2886317	X_2886317_SNP [dm3] X_2992284_SNP [dm6]	T	C	1.395e^-227	3.573e^-223	INTRON kirre
X	3156052	X_3156052_SNP [dm3] X_3262019_SNP [dm6]	C	T	1.395e^-227	3.573e^-223	INTRON dnc
2L	3105754	2L_3105754_SNP [dm3] 2L_3105754_SNP [dm6]	G	A	5.186e^-221	1.141e^-216	INTRON toc
2L	17279672	2L_17279672_SNP [dm3] 2L_17279672_SNP [dm6]	C	T	5.258e^-221	1.141e^-216	UPSTREAM CR45729 INTERGENIC
2L	17282955	2L_17282955_SNP [dm3] 2L_17282955_SNP [dm6]	C	A	5.258e^-221	1.141e^-216	INTERGENIC
2L	17282974	2L_17282974_SNP [dm3] 2L_17282974_SNP [dm6]	T	G	5.258e^-221	1.141e^-216	INTERGENIC
2L	17282977	2L_17282977_SNP [dm3] 2L_17282977_SNP [dm6]	A	T	5.258e^-221	1.141e^-216	INTERGENIC
2L	17283214	2L_17283214_SNP [dm3] 2L_17283214_SNP [dm6]	G	A	5.258e^-221	1.141e^-216	INTERGENIC
2L	17289286	2L_17289286_DEL [dm3] 2L_17289286_DEL [dm6]	TCAAAAATGATTCTTTACGT...	T	5.258e^-221	1.141e^-216	INTERGENIC
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	5.258e^-221	1.141e^-216	INTERGENIC
2L	17330912	2L_17330912_SNP [dm3] 2L_17330912_SNP [dm6]	A	T	5.258e^-221	1.141e^-216	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	5.258e^-221	1.141e^-216	INTERGENIC
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	5.258e^-221	1.141e^-216	INTERGENIC
2L	3628632	2L_3628632_SNP [dm3] 2L_3628632_SNP [dm6]	C	G	5.258e^-221	1.141e^-216	INTRON for	TF binding site BDTNP1_TFBS_twi
2L	8223242	2L_8223242_SNP [dm3] 2L_8223242_SNP [dm6]	T	C	5.258e^-221	1.141e^-216	SYNONYMOUS_CODING Pvr
3R	23969599	3R_23969599_SNP [dm3] 3R_28143877_SNP [dm6]	G	T	5.596e^-221	1.200e^-216	INTERGENIC
2L	13396994	2L_13396994_SNP [dm3] 2L_13396994_SNP [dm6]	C	T	4.135e^-220	6.610e^-216	SYNONYMOUS_CODING CG10859 UPSTREAM CG16957	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10115124	2L_10115124_SNP [dm3] 2L_10115124_SNP [dm6]	T	G	4.852e^-220	6.610e^-216	INTRON CG44153 & 1 other
2L	16230623	2L_16230623_SNP [dm3] 2L_16230623_SNP [dm6]	T	A	4.855e^-220	6.610e^-216	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	17301019	2L_17301019_SNP [dm3] 2L_17301019_SNP [dm6]	T	C	4.855e^-220	6.610e^-216	INTERGENIC
2L	721488	2L_721488_SNP [dm3] 2L_721488_SNP [dm6]	A	T	4.855e^-220	6.610e^-216	INTERGENIC
2L	8132028	2L_8132028_SNP [dm3] 2L_8132028_SNP [dm6]	A	G	4.855e^-220	6.610e^-216	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	8137778	2L_8137778_SNP [dm3] 2L_8137778_SNP [dm6]	T	A	4.855e^-220	6.610e^-216	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	8139036	2L_8139036_SNP [dm3] 2L_8139036_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	8139317	2L_8139317_SNP [dm3] 2L_8139317_SNP [dm6]	C	A	4.855e^-220	6.610e^-216	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	8140678	2L_8140678_SNP [dm3] 2L_8140678_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552 DOWNSTREAM mir-4984	TF binding site mE1_TFBS_cad
2R	20392306	2R_20392306_SNP [dm3] 2R_24504783_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	INTERGENIC
2R	20392829	2R_20392829_SNP [dm3] 2R_24505306_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7724785	3L_7724785_SNP [dm3] 3L_7731685_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo
3L	9230823	3L_9230823_SNP [dm3] 3L_9237723_SNP [dm6]	G	T	4.855e^-220	6.610e^-216	INTERGENIC
3L	9241877	3L_9241877_SNP [dm3] 3L_9248777_SNP [dm6]	T	A	4.855e^-220	6.610e^-216	INTERGENIC
3R	16874784	3R_16874784_SNP [dm3] 3R_21049062_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	UPSTREAM CG7079 DOWNSTREAM CG17279 INTERGENIC
3R	16890484	3R_16890484_SNP [dm3] 3R_21064762_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17104469	3R_17104469_SNP [dm3] 3R_21278747_SNP [dm6]	A	C	4.855e^-220	6.610e^-216	UTR_3_PRIME SIFaR
3R	17104637	3R_17104637_SNP [dm3] 3R_21278915_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	UTR_3_PRIME SIFaR
3R	17104665	3R_17104665_SNP [dm3] 3R_21278943_SNP [dm6]	A	T	4.855e^-220	6.610e^-216	UTR_3_PRIME SIFaR
3R	17104721	3R_17104721_SNP [dm3] 3R_21278999_SNP [dm6]	A	T	4.855e^-220	6.610e^-216	UTR_3_PRIME SIFaR	TF binding site mE1_TFBS_cad
3R	17104749	3R_17104749_SNP [dm3] 3R_21279027_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	UTR_3_PRIME SIFaR	TF binding site mE1_TFBS_cad
3R	17393835	3R_17393835_SNP [dm3] 3R_21568113_SNP [dm6]	T	C	4.855e^-220	6.610e^-216	INTRON CG15498
3R	17824649	3R_17824649_SNP [dm3] 3R_21998927_SNP [dm6]	T	C	4.855e^-220	6.610e^-216	INTRON Eip93F
3R	18600000	3R_18600000_SNP [dm3] 3R_22774278_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	19379900	3R_19379900_SNP [dm3] 3R_23554178_SNP [dm6]	A	G	4.855e^-220	6.610e^-216	DOWNSTREAM CG10164 INTERGENIC
3R	19502650	3R_19502650_SNP [dm3] 3R_23676928_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	UPSTREAM CG13822 INTERGENIC
3R	19966661	3R_19966661_SNP [dm3] 3R_24140939_SNP [dm6]	C	A	4.855e^-220	6.610e^-216	UPSTREAM Kal1 DOWNSTREAM Npc2f INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20334502	3R_20334502_SNP [dm3] 3R_24508780_SNP [dm6]	A	C	4.855e^-220	6.610e^-216	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	20334518	3R_20334518_SNP [dm3] 3R_24508796_SNP [dm6]	C	A	4.855e^-220	6.610e^-216	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	21317648	3R_21317648_SNP [dm3] 3R_25491926_SNP [dm6]	A	G	4.855e^-220	6.610e^-216	SYNONYMOUS_CODING CG5112 UPSTREAM Dhap-at EXON CR44179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21624453	3R_21624453_SNP [dm3] 3R_25798731_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	UPSTREAM CR43847 INTERGENIC
3R	21629545	3R_21629545_SNP [dm3] 3R_25803823_SNP [dm6]	C	G	4.855e^-220	6.610e^-216	INTERGENIC
3R	21643707	3R_21643707_SNP [dm3] 3R_25817985_SNP [dm6]	C	G	4.855e^-220	6.610e^-216	INTERGENIC
3R	21644795	3R_21644795_SNP [dm3] 3R_25819073_SNP [dm6]	A	G	4.855e^-220	6.610e^-216	INTERGENIC
3R	21648321	3R_21648321_SNP [dm3] 3R_25822599_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	INTERGENIC
3R	21649080	3R_21649080_SNP [dm3] 3R_25823358_SNP [dm6]	T	A	4.855e^-220	6.610e^-216	DOWNSTREAM CR44949 INTERGENIC
3R	22567854	3R_22567854_SNP [dm3] 3R_26742132_SNP [dm6]	G	A	4.855e^-220	6.610e^-216	INTERGENIC
3R	23364896	3R_23364896_DEL [dm3] 3R_27539174_DEL [dm6]	TACTTGTGTTCT...	T	4.855e^-220	6.610e^-216	DOWNSTREAM CR44288 INTERGENIC
3R	23583599	3R_23583599_SNP [dm3] 3R_27757877_SNP [dm6]	G	C	4.855e^-220	6.610e^-216	INTERGENIC
3R	23751566	3R_23751566_SNP [dm3] 3R_27925844_SNP [dm6]	A	G	4.855e^-220	6.610e^-216	UTR_5_PRIME mino UPSTREAM CR45566 DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl
X	3028896	X_3028896_SNP [dm3] X_3134863_SNP [dm6]	A	T	4.855e^-220	6.610e^-216	UPSTREAM N DOWNSTREAM kirre INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl
X	3156596	X_3156596_SNP [dm3] X_3262563_SNP [dm6]	C	T	4.855e^-220	6.610e^-216	INTRON dnc
2L	17299709	2L_17299709_SNP [dm3] 2L_17299709_SNP [dm6]	C	A	4.861e^-220	6.610e^-216	INTERGENIC
2L	11911465	2L_11911465_SNP [dm3] 2L_11911465_SNP [dm6]	C	A	4.884e^-220	6.610e^-216	INTRON Pde1c
2L	12950102	2L_12950102_SNP [dm3] 2L_12950102_SNP [dm6]	T	A	4.981e^-220	6.610e^-216	INTERGENIC
2L	7579995	2L_7579995_SNP [dm3] 2L_7579995_SNP [dm6]	C	A	4.981e^-220	6.610e^-216	INTERGENIC
2L	7589295	2L_7589295_SNP [dm3] 2L_7589295_SNP [dm6]	C	T	4.981e^-220	6.610e^-216	INTERGENIC
2L	17300301	2L_17300301_SNP [dm3] 2L_17300301_SNP [dm6]	A	T	5.231e^-220	6.610e^-216	INTERGENIC
2L	17300388	2L_17300388_SNP [dm3] 2L_17300388_SNP [dm6]	T	C	5.231e^-220	6.610e^-216	INTERGENIC
2L	17302472	2L_17302472_SNP [dm3] 2L_17302472_SNP [dm6]	G	T	5.231e^-220	6.610e^-216	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	17328165	2L_17328165_SNP [dm3] 2L_17328165_SNP [dm6]	C	A	5.231e^-220	6.610e^-216	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9517883	2L_9517883_SNP [dm3] 2L_9517883_SNP [dm6]	C	G	5.231e^-220	6.610e^-216	SYNONYMOUS_CODING CG33298
2L	9518080	2L_9518080_SNP [dm3] 2L_9518080_SNP [dm6]	G	T	5.231e^-220	6.610e^-216	NON_SYNONYMOUS_CODING CG33298
2L	9518444	2L_9518444_SNP [dm3] 2L_9518444_SNP [dm6]	C	T	5.231e^-220	6.610e^-216	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_inv
2R	10298796	2R_10298796_SNP [dm3] 2R_14411291_SNP [dm6]	C	T	5.231e^-220	6.610e^-216	SPLICE_SITE_REGION CG17385 UPSTREAM Sin1 INTRON CG17385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10301344	2R_10301344_SNP [dm3] 2R_14413839_SNP [dm6]	A	G	5.231e^-220	6.610e^-216	UTR_3_PRIME Sin1	TF binding site mE1_TFBS_cad
2R	10302413	2R_10302413_SNP [dm3] 2R_14414908_SNP [dm6]	G	A	5.231e^-220	6.610e^-216	INTERGENIC
2R	10302416	2R_10302416_SNP [dm3] 2R_14414911_SNP [dm6]	A	G	5.231e^-220	6.610e^-216	INTERGENIC
3R	19468510	3R_19468510_SNP [dm3] 3R_23642788_SNP [dm6]	G	T	5.231e^-220	6.610e^-216	INTRON CG31145	TF binding site mE1_TFBS_chinmo
2R	14826686	2R_14826686_SNP [dm3] 2R_18939181_SNP [dm6]	T	G	3.361e^-219	4.218e^-215	INTRON sano
2R	16232312	2R_16232312_SNP [dm3] 2R_20344807_SNP [dm6]	G	T	2.440e^-217	3.041e^-213	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17108306	2R_17108306_SNP [dm3] 2R_21220801_SNP [dm6]	A	G	1.636e^-214	2.025e^-210	NON_SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12473420	2R_12473420_SNP [dm3] 2R_16585915_SNP [dm6]	A	G	1.601e^-213	1.969e^-209	UPSTREAM RpLP2 DOWNSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17282857	2L_17282857_SNP [dm3] 2L_17282857_SNP [dm6]	G	A	1.978e^-213	2.384e^-209	INTERGENIC
2L	8139283	2L_8139283_SNP [dm3] 2L_8139283_SNP [dm6]	A	G	1.978e^-213	2.384e^-209	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	17292237	2L_17292237_SNP [dm3] 2L_17292237_SNP [dm6]	G	T	1.990e^-213	2.384e^-209	UPSTREAM CG6380 INTERGENIC
3L	7203944	3L_7203944_SNP [dm3] 3L_7210844_SNP [dm6]	A	G	1.990e^-213	2.384e^-209	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17283162	2L_17283162_SNP [dm3] 2L_17283162_SNP [dm6]	G	A	2.130e^-213	2.471e^-209	INTERGENIC
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	2.130e^-213	2.471e^-209	INTERGENIC
2L	18744111	2L_18744111_SNP [dm3] 2L_18744111_SNP [dm6]	T	C	2.130e^-213	2.471e^-209	INTERGENIC
2L	18744158	2L_18744158_SNP [dm3] 2L_18744158_SNP [dm6]	T	A	2.130e^-213	2.471e^-209	INTERGENIC
2L	18744159	2L_18744159_SNP [dm3] 2L_18744159_SNP [dm6]	G	T	2.130e^-213	2.471e^-209	INTERGENIC
2L	11459892	2L_11459892_SNP [dm3] 2L_11459892_SNP [dm6]	T	C	2.284e^-213	2.617e^-209	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	2.284e^-213	2.617e^-209	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	23796594	3R_23796594_DEL [dm3] 3R_27970872_DEL [dm6]	AA	A	1.688e^-212	1.751e^-208	INTRON betaTub97EF
2R	10937004	2R_10937004_SNP [dm3] 2R_15049499_SNP [dm6]	T	A	1.690e^-212	1.751e^-208	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5670833	3L_5670833_SNP [dm3] 3L_5677733_SNP [dm6]	C	T	1.690e^-212	1.751e^-208	UPSTREAM sif INTRON sif
2L	14677296	2L_14677296_SNP [dm3] 2L_14677296_SNP [dm6]	A	C	1.691e^-212	1.751e^-208	INTRON osp
2L	14677304	2L_14677304_INS [dm3] 2L_14677304_INS [dm6]	T	TCAAAAGATCTATTAGGT...	1.691e^-212	1.751e^-208	INTRON osp
2L	14790322	2L_14790322_SNP [dm3] 2L_14790322_SNP [dm6]	C	T	1.691e^-212	1.751e^-208	INTERGENIC
2L	721487	2L_721487_SNP [dm3] 2L_721487_SNP [dm6]	A	T	1.691e^-212	1.751e^-208	INTERGENIC
2R	3653630	2R_3653630_SNP [dm3] 2R_7766125_SNP [dm6]	C	A	1.691e^-212	1.751e^-208	INTRON CG30497 & 1 other
2R	817393	2R_817393_SNP [dm3] 2R_4929888_SNP [dm6]	G	A	1.691e^-212	1.751e^-208	INTRON Ir41a
2R	851487	2R_851487_DEL [dm3] 2R_4963982_DEL [dm6]	TT	T	1.691e^-212	1.751e^-208	INTRON Ir41a	transposable element FlyBase
3R	17735005	3R_17735005_SNP [dm3] 3R_21909283_SNP [dm6]	G	T	1.691e^-212	1.751e^-208	INTERGENIC
3R	23751216	3R_23751216_SNP [dm3] 3R_27925494_SNP [dm6]	A	G	1.691e^-212	1.751e^-208	UTR_5_PRIME mino UPSTREAM mino & 1 other DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24641416	3R_24641416_SNP [dm3] 3R_28815694_SNP [dm6]	A	C	1.693e^-212	1.751e^-208	NON_SYNONYMOUS_CODING CG1646 UTR_3_PRIME CG1646	TF binding site mE1_TFBS_cad
2L	17002217	2L_17002217_SNP [dm3] 2L_17002217_SNP [dm6]	A	G	1.700e^-212	1.751e^-208	INTERGENIC
2L	17002222	2L_17002222_SNP [dm3] 2L_17002222_SNP [dm6]	T	G	1.700e^-212	1.751e^-208	INTERGENIC
2L	17331862	2L_17331862_SNP [dm3] 2L_17331862_SNP [dm6]	A	G	1.732e^-212	1.751e^-208	INTERGENIC
2L	2360852	2L_2360852_SNP [dm3] 2L_2360852_SNP [dm6]	C	T	1.732e^-212	1.751e^-208	INTRON Rab5
2L	9309958	2L_9309958_SNP [dm3] 2L_9309958_SNP [dm6]	A	G	1.732e^-212	1.751e^-208	INTERGENIC
X	4530158	X_4530158_SNP [dm3] X_4636125_SNP [dm6]	A	C	1.817e^-212	1.751e^-208	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1602982	2L_1602982_SNP [dm3] 2L_1602982_SNP [dm6]	C	T	1.818e^-212	1.751e^-208	SYNONYMOUS_CODING haf INTRON CG31935
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	1.818e^-212	1.751e^-208	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2338144	2L_2338144_SNP [dm3] 2L_2338144_SNP [dm6]	C	A	1.818e^-212	1.751e^-208	INTRON CG9967 & 1 other
2R	6605415	2R_6605415_SNP [dm3] 2R_10717910_SNP [dm6]	G	T	1.818e^-212	1.751e^-208	INTRON stan
3R	17104676	3R_17104676_SNP [dm3] 3R_21278954_SNP [dm6]	G	A	1.818e^-212	1.751e^-208	UTR_3_PRIME SIFaR
3R	21441821	3R_21441821_SNP [dm3] 3R_25616099_SNP [dm6]	C	A	1.818e^-212	1.751e^-208	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	21631369	3R_21631369_SNP [dm3] 3R_25805647_SNP [dm6]	T	A	1.818e^-212	1.751e^-208	UPSTREAM BG642167 INTERGENIC
X	5007094	X_5007094_SNP [dm3] X_5113061_SNP [dm6]	T	G	1.818e^-212	1.751e^-208	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9288353	2L_9288353_SNP [dm3] 2L_9288353_SNP [dm6]	A	C	1.820e^-212	1.751e^-208	INTRON Ggamma30A
2R	15376945	2R_15376945_SNP [dm3] 2R_19489440_SNP [dm6]	G	C	1.820e^-212	1.751e^-208	INTRON Oseg6
2R	13918642	2R_13918642_SNP [dm3] 2R_18031137_SNP [dm6]	T	C	1.836e^-212	1.751e^-208	INTERGENIC
2L	7580097	2L_7580097_SNP [dm3] 2L_7580097_SNP [dm6]	G	C	1.870e^-212	1.751e^-208	INTERGENIC
2L	7581506	2L_7581506_DEL [dm3] 2L_7581506_DEL [dm6]	TCA	T	1.870e^-212	1.751e^-208	UPSTREAM Spn28B INTERGENIC
2L	7581511	2L_7581511_SNP [dm3] 2L_7581511_SNP [dm6]	A	G	1.870e^-212	1.751e^-208	UPSTREAM Spn28B INTERGENIC
2L	7581514	2L_7581514_DEL [dm3] 2L_7581514_DEL [dm6]	GA	T	1.870e^-212	1.751e^-208	UPSTREAM Spn28B INTERGENIC
2L	7581517	2L_7581517_SNP [dm3] 2L_7581517_SNP [dm6]	G	A	1.870e^-212	1.751e^-208	UPSTREAM Spn28B INTERGENIC
2L	7583389	2L_7583389_SNP [dm3] 2L_7583389_SNP [dm6]	T	G	1.870e^-212	1.751e^-208	DOWNSTREAM Spn28B INTERGENIC
2R	13693223	2R_13693223_DEL [dm3] 2R_17805718_DEL [dm6]	TT	T	2.387e^-212	2.224e^-208	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	732194	3L_732194_DEL [dm3] 3L_732194_DEL [dm6]	ATTTATTTATATA...	A	1.095e^-211	1.015e^-207	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15524603	2R_15524603_INS [dm3] 2R_19637098_INS [dm6]	A	AA	5.360e^-211	4.944e^-207	UPSTREAM mir-4983 & 1 other INTRON CG18367
2R	11960952	2R_11960952_SNP [dm3] 2R_16073447_SNP [dm6]	T	C	5.648e^-211	5.184e^-207	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14825630	2R_14825630_SNP [dm3] 2R_18938125_SNP [dm6]	T	C	5.705e^-211	5.210e^-207	INTRON sano
2R	7066265	2R_7066265_SNP [dm3] 2R_11178760_SNP [dm6]	T	G	6.131e^-211	5.572e^-207	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17435868	2R_17435868_INS [dm3] 2R_21548363_INS [dm6]	A	AGTTTT	7.277e^-209	6.581e^-205	INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13932926	2R_13932926_SNP [dm3] 2R_18045421_SNP [dm6]	C	G	7.352e^-209	6.616e^-205	UPSTREAM CG5770 DOWNSTREAM CG5767 INTERGENIC
2L	8131764	2L_8131764_SNP [dm3] 2L_8131764_SNP [dm6]	C	G	6.820e^-207	6.108e^-203	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16274002	2R_16274002_SNP [dm3] 2R_20386497_SNP [dm6]	G	A	1.793e^-206	1.598e^-202	INTERGENIC
2L	945468	2L_945468_SNP [dm3] 2L_945468_SNP [dm6]	T	G	7.430e^-206	6.545e^-202	INTRON CG4341
2L	17289381	2L_17289381_SNP [dm3] 2L_17289381_SNP [dm6]	C	A	7.450e^-206	6.545e^-202	INTERGENIC
2L	8128898	2L_8128898_INS [dm3] 2L_8128898_INS [dm6]	T	TA	7.450e^-206	6.545e^-202	INTRON CG8668	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	20801554	2L_20801554_DEL [dm3] 2L_20801554_DEL [dm6]	TAT	T	7.994e^-206	6.902e^-202	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8131417	2L_8131417_INS [dm3] 2L_8131417_INS [dm6]	A	AA	7.994e^-206	6.902e^-202	UTR_5_PRIME CG8668	TF binding site BDTNP1_TFBS_da
3R	17560634	3R_17560634_DEL [dm3] 3R_21734912_DEL [dm6]	ATATTCC	A	7.994e^-206	6.902e^-202	DOWNSTREAM Sfp93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18744164	2L_18744164_DEL [dm3] 2L_18744164_DEL [dm6]	TATTTT	T	8.006e^-206	6.902e^-202	INTERGENIC
2L	18744172	2L_18744172_SNP [dm3] 2L_18744172_SNP [dm6]	A	G	8.051e^-206	6.908e^-202	INTERGENIC
2R	8455691	2R_8455691_SNP [dm3] 2R_12568186_SNP [dm6]	A	G	8.102e^-206	6.919e^-202	NON_SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
2L	8780749	2L_8780749_SNP [dm3] 2L_8780749_SNP [dm6]	C	T	8.687e^-206	7.385e^-202	SYNONYMOUS_CODING CG9468	TF binding site mE1_TFBS_cad
X	21263607	X_21263607_SNP [dm3] X_21392580_SNP [dm6]	C	T	5.915e^-205	4.987e^-201	INTERGENIC
3L	11708450	3L_11708450_INS [dm3] 3L_11715350_INS [dm6]	T	TCGGGCT	5.924e^-205	4.987e^-201	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8140302	2L_8140302_SNP [dm3] 2L_8140302_SNP [dm6]	C	G	5.982e^-205	4.987e^-201	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	839119	2R_839119_INS [dm3] 2R_4951614_INS [dm6]	T	TTTCA	5.982e^-205	4.987e^-201	INTRON Ir41a	transposable element FlyBase
2L	8140222	2L_8140222_SNP [dm3] 2L_8140222_SNP [dm6]	T	G	6.002e^-205	4.987e^-201	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	10302801	2R_10302801_SNP [dm3] 2R_14415296_SNP [dm6]	C	T	6.321e^-205	5.182e^-201	INTERGENIC
3R	20225637	3R_20225637_SNP [dm3] 3R_24399915_SNP [dm6]	A	C	6.321e^-205	5.182e^-201	UTR_3_PRIME nAChRalpha1
X	8686766	X_8686766_SNP [dm3] X_8792733_SNP [dm6]	T	A	6.321e^-205	5.182e^-201	INTRON Lim1
2R	16083740	2R_16083740_SNP [dm3] 2R_20196235_SNP [dm6]	A	T	6.358e^-205	5.190e^-201	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22862144	3R_22862144_SNP [dm3] 3R_27036422_SNP [dm6]	T	C	6.424e^-205	5.221e^-201	INTRON RYa-R
2L	9329459	2L_9329459_SNP [dm3] 2L_9329459_SNP [dm6]	G	T	6.492e^-205	5.228e^-201	NON_SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
3L	1404031	3L_1404031_INS [dm3] 3L_1404031_INS [dm6]	A	ACA	6.492e^-205	5.228e^-201	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7579564	2L_7579564_SNP [dm3] 2L_7579564_SNP [dm6]	G	T	6.518e^-205	5.228e^-201	UPSTREAM RapGAP1 INTERGENIC
X	8551479	X_8551479_SNP [dm3] X_8657446_SNP [dm6]	A	C	6.839e^-205	5.449e^-201	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5158489	2R_5158489_SNP [dm3] 2R_9270984_SNP [dm6]	G	T	6.852e^-205	5.449e^-201	UPSTREAM Pkn INTRON Pkn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	5418093	3L_5418093_SNP [dm3] 3L_5424993_SNP [dm6]	T	G	6.903e^-205	5.466e^-201	INTRON CG34391
2R	11621918	2R_11621918_SNP [dm3] 2R_15734413_SNP [dm6]	C	T	1.457e^-200	1.149e^-196	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	12521631	2L_12521631_SNP [dm3] 2L_12521631_SNP [dm6]	A	G	2.118e^-200	1.663e^-196	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12357443	2R_12357443_SNP [dm3] 2R_16469938_SNP [dm6]	G	A	2.096e^-197	1.638e^-193	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1965013	2L_1965013_DEL [dm3] 2L_1965013_DEL [dm6]	CCGAA	C	2.228e^-197	1.734e^-193	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7579565	2L_7579565_SNP [dm3] 2L_7579565_SNP [dm6]	T	G	2.293e^-197	1.777e^-193	UPSTREAM RapGAP1 INTERGENIC
3R	23848635	3R_23848635_DEL [dm3] 3R_28022913_DEL [dm6]	AA	G	1.247e^-196	9.556e^-193	INTERGENIC
3R	20937068	3R_20937068_SNP [dm3] 3R_25111346_SNP [dm6]	A	G	1.248e^-196	9.556e^-193	SYNONYMOUS_CODING CG13650	TF binding site mE1_TFBS_cad
3R	21511655	3R_21511655_SNP [dm3] 3R_25685933_SNP [dm6]	A	G	1.248e^-196	9.556e^-193	SYNONYMOUS_CODING CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	19690443	3R_19690443_SNP [dm3] 3R_23864721_SNP [dm6]	G	A	1.349e^-196	1.024e^-192	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20300319	3R_20300319_INS [dm3] 3R_24474597_INS [dm6]	A	AGCACCA	1.349e^-196	1.024e^-192	INTERGENIC
X	2359566	X_2359566_SNP [dm3] X_2465533_SNP [dm6]	C	A	1.358e^-196	1.027e^-192	INTRON boi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2180162	2R_2180162_SNP [dm3] 2R_6292657_SNP [dm6]	T	G	5.576e^-195	4.198e^-191	INTERGENIC	transposable element FlyBase
3R	25390560	3R_25390560_INS [dm3] 3R_29564838_INS [dm6]	A	ATTCAA	1.471e^-192	1.103e^-188	UTR_3_PRIME Dr
3L	12848840	3L_12848840_SNP [dm3] 3L_12855740_SNP [dm6]	A	C	1.509e^-192	1.127e^-188	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15189110	2R_15189110_SNP [dm3] 2R_19301605_SNP [dm6]	G	T	1.438e^-191	1.070e^-187	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	17732877	2R_17732877_SNP [dm3] 2R_21845372_SNP [dm6]	G	T	3.947e^-191	2.924e^-187	INTERGENIC
2R	850247	2R_850247_SNP [dm3] 2R_4962742_SNP [dm6]	C	T	3.886e^-189	2.868e^-185	INTRON Ir41a	transposable element FlyBase
2R	9218910	2R_9218910_SNP [dm3] 2R_13331405_SNP [dm6]	G	T	4.085e^-189	3.002e^-185	INTRON CR44206	TF binding site mE1_TFBS_cad
3R	17253136	3R_17253136_INS [dm3] 3R_21427414_INS [dm6]	T	TCCTGCACT	4.125e^-189	3.020e^-185	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6593176	2L_6593176_SNP [dm3] 2L_6593176_SNP [dm6]	A	G	4.326e^-189	3.154e^-185	INTRON CG11319
3R	21669002	3R_21669002_INS [dm3] 3R_25843280_INS [dm6]	A	ACAA	4.383e^-189	3.184e^-185	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
3R	15216297	3R_15216297_SNP [dm3] 3R_19390575_SNP [dm6]	C	T	3.981e^-183	2.880e^-179	DOWNSTREAM CG3734 INTRON Ino80 & 1 other
3R	27477085	3R_27477085_INS [dm3] 3R_31651363_INS [dm6]	A	AGACA	4.253e^-183	3.065e^-179	INTRON kek6
2L	20383515	2L_20383515_SNP [dm3] 2L_20383515_SNP [dm6]	T	G	2.706e^-182	1.942e^-178	INTERGENIC
2R	805391	2R_805391_INS [dm3] 2R_4917886_INS [dm6]	A	AA	2.728e^-182	1.951e^-178	INTRON Ir41a
2L	7588505	2L_7588505_INS [dm3] 2L_7588505_INS [dm6]	G	GTG	3.266e^-182	2.327e^-178	INTERGENIC
2R	17409688	2R_17409688_SNP [dm3] 2R_21522183_SNP [dm6]	G	A	1.994e^-180	1.415e^-176	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	19074171	2R_19074171_SNP [dm3] 2R_23186648_SNP [dm6]	G	T	1.636e^-175	1.156e^-171	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3156773	X_3156773_SNP [dm3] X_3262740_SNP [dm6]	A	G	1.846e^-175	1.300e^-171	INTRON dnc
2L	22530969	2L_22530969_SNP [dm3] 2L_22638237_SNP [dm6]	C	A	2.038e^-175	1.430e^-171	INTRON CG40006
3L	11934775	3L_11934775_INS [dm3] 3L_11941675_INS [dm6]	A	AATATATGTATACAA...	2.654e^-173	1.855e^-169	UPSTREAM Rpt4R INTERGENIC
X	21911343	X_21911343_SNP [dm3] X_22509507_SNP [dm6]	A	T	5.980e^-166	4.163e^-162	INTERGENIC
X	21041867	X_21041867_SNP [dm3] X_21170840_SNP [dm6]	A	T	1.804e^-150	1.251e^-146	INTERGENIC
X	20391580	X_20391580_SNP [dm3] X_20520553_SNP [dm6]	A	G	6.263e^-144	4.327e^-140	INTRON Tak1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20177402	2R_20177402_SNP [dm3] 2R_24289879_SNP [dm6]	A	G	6.855e^-30	4.549e^-26	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20397393	2R_20397393_SNP [dm3] 2R_24509870_SNP [dm6]	A	G	6.855e^-30	4.549e^-26	UTR_3_PRIME Letm1	TF binding site mE1_TFBS_cad
3L	17355426	3L_17355426_DEL [dm3] 3L_17362326_DEL [dm6]	ACTGACGTTTTCCGTTACGA...	A	6.855e^-30	4.549e^-26	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	16890457	3R_16890457_SNP [dm3] 3R_21064735_SNP [dm6]	A	G	6.855e^-30	4.549e^-26	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16890496	3R_16890496_DEL [dm3] 3R_21064774_DEL [dm6]	TC	T	6.855e^-30	4.549e^-26	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25243803	3R_25243803_SNP [dm3] 3R_29418081_SNP [dm6]	C	T	6.855e^-30	4.549e^-26	INTRON Ptp99A
3R	25245361	3R_25245361_SNP [dm3] 3R_29419639_SNP [dm6]	G	A	6.855e^-30	4.549e^-26	INTRON Ptp99A
3R	25245795	3R_25245795_SNP [dm3] 3R_29420073_SNP [dm6]	A	T	6.855e^-30	4.549e^-26	INTRON Ptp99A
3R	25245796	3R_25245796_SNP [dm3] 3R_29420074_SNP [dm6]	T	A	6.855e^-30	4.549e^-26	INTRON Ptp99A
3R	25245917	3R_25245917_SNP [dm3] 3R_29420195_SNP [dm6]	C	T	6.855e^-30	4.549e^-26	INTRON Ptp99A
3R	26087268	3R_26087268_DEL [dm3] 3R_30261546_DEL [dm6]	CTACTGCCTGGCAT...	C	6.855e^-30	4.549e^-26	INTERGENIC
2R	17935791	2R_17935791_SNP [dm3] 2R_22048286_SNP [dm6]	A	G	4.154e^-29	2.747e^-25	INTERGENIC
3R	25250002	3R_25250002_SNP [dm3] 3R_29424280_SNP [dm6]	T	G	6.036e^-29	3.977e^-25	INTRON Ptp99A
3R	25245792	3R_25245792_SNP [dm3] 3R_29420070_SNP [dm6]	A	G	6.375e^-29	4.156e^-25	INTRON Ptp99A
3R	25247333	3R_25247333_SNP [dm3] 3R_29421611_SNP [dm6]	G	A	6.375e^-29	4.156e^-25	INTRON Ptp99A
3R	26087284	3R_26087284_SNP [dm3] 3R_30261562_SNP [dm6]	C	A	6.375e^-29	4.156e^-25	INTERGENIC
3R	25245806	3R_25245806_SNP [dm3] 3R_29420084_SNP [dm6]	A	T	5.307e^-28	3.447e^-24	INTRON Ptp99A
3R	27026565	3R_27026565_SNP [dm3] 3R_31200843_SNP [dm6]	C	T	5.607e^-28	3.630e^-24	INTRON CG1544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16874802	3R_16874802_SNP [dm3] 3R_21049080_SNP [dm6]	T	A	5.951e^-28	3.839e^-24	UPSTREAM CG7079 DOWNSTREAM CG17279 INTERGENIC
3L	16274679	3L_16274679_SNP [dm3] 3L_16281579_SNP [dm6]	A	T	4.314e^-26	2.773e^-22	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4152465	2L_4152465_SNP [dm3] 2L_4152465_SNP [dm6]	C	A	6.663e^-12	4.268e^-8	INTERGENIC
2L	6700670	2L_6700670_SNP [dm3] 2L_6700670_SNP [dm6]	A	T	7.127e^-11	4.550e^-7	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9517238	2L_9517238_SNP [dm3] 2L_9517238_SNP [dm6]	C	T	1.530e^-10	9.736e^-7	SYNONYMOUS_CODING CG33298
2L	17009261	2L_17009261_SNP [dm3] 2L_17009261_SNP [dm6]	T	A	1.847e^-10	1.167e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6700190	2L_6700190_SNP [dm3] 2L_6700190_SNP [dm6]	C	G	1.847e^-10	1.167e^-6	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14103881	2L_14103881_SNP [dm3] 2L_14103881_SNP [dm6]	G	T	3.775e^-10	2.361e^-6	UPSTREAM CG16879 INTERGENIC
2L	6700797	2L_6700797_SNP [dm3] 2L_6700797_SNP [dm6]	G	C	3.775e^-10	2.361e^-6	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6700799	2L_6700799_SNP [dm3] 2L_6700799_SNP [dm6]	C	T	3.775e^-10	2.361e^-6	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6761395	2R_6761395_SNP [dm3] 2R_10873890_SNP [dm6]	G	T	7.130e^-10	4.443e^-6	UTR_5_PRIME CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2L	10941641	2L_10941641_SNP [dm3] 2L_10941641_SNP [dm6]	C	T	7.242e^-10	4.498e^-6	DOWNSTREAM CR44492 INTRON dpr2
2L	6701039	2L_6701039_SNP [dm3] 2L_6701039_SNP [dm6]	T	C	7.409e^-10	4.571e^-6	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7543222	2L_7543222_SNP [dm3] 2L_7543222_SNP [dm6]	T	A	7.409e^-10	4.571e^-6	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	5048245	2L_5048245_SNP [dm3] 2L_5048245_SNP [dm6]	A	G	1.482e^-9	9.112e^-6	UTR_3_PRIME CG33995 & 3 others
3R	7587957	3R_7587957_DEL [dm3] 3R_11762235_DEL [dm6]	GGAATTAGTG	G	3.143e^-9	1.927e^-5	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8033114	2L_8033114_SNP [dm3] 2L_8033114_SNP [dm6]	C	T	6.986e^-9	4.268e^-5	INTRON CG7367 & 1 other
3L	8454497	3L_8454497_SNP [dm3] 3L_8461397_SNP [dm6]	T	G	1.129e^-8	6.873e^-5	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14280056	2L_14280056_SNP [dm3] 2L_14280056_SNP [dm6]	C	T	1.159e^-8	7.008e^-5	INTRON wb
X	10328772	X_10328772_SNP [dm3] X_10434739_SNP [dm6]	A	C	1.159e^-8	7.008e^-5	INTRON CG32683
2L	17324015	2L_17324015_INS [dm3] 2L_17324015_INS [dm6]	A	AAA	1.301e^-8	7.845e^-5	INTERGENIC
2R	20176011	2R_20176011_SNP [dm3] 2R_24288488_SNP [dm6]	A	G	1.774e^-8	1.062e^-4	SYNONYMOUS_CODING nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15642978	3L_15642978_SNP [dm3] 3L_15649878_SNP [dm6]	A	T	1.774e^-8	1.062e^-4	UPSTREAM Eig71Eb & 2 others DOWNSTREAM CG43083 INTERGENIC
2L	12170121	2L_12170121_SNP [dm3] 2L_12170121_SNP [dm6]	T	A	2.449e^-8	1.325e^-4	UTR_3_PRIME CG31760 UPSTREAM CG17217
2L	14280272	2L_14280272_SNP [dm3] 2L_14280272_SNP [dm6]	G	T	2.449e^-8	1.325e^-4	INTRON wb	TF binding site BDTNP1_TFBS_prd
2L	18760638	2L_18760638_SNP [dm3] 2L_18760638_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	INTERGENIC
2L	18761065	2L_18761065_SNP [dm3] 2L_18761065_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	INTERGENIC
2L	18761087	2L_18761087_SNP [dm3] 2L_18761087_SNP [dm6]	A	G	2.449e^-8	1.325e^-4	INTERGENIC
2L	2655364	2L_2655364_SNP [dm3] 2L_2655364_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	UTR_3_PRIME Or23a UPSTREAM Prosbeta4R2
2L	3105717	2L_3105717_SNP [dm3] 2L_3105717_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	INTRON toc
2L	3387069	2L_3387069_SNP [dm3] 2L_3387069_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2L	3694301	2L_3694301_SNP [dm3] 2L_3694301_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	UPSTREAM Acp24A4 DOWNSTREAM CG43165 & 1 other INTRON CR43364
2L	3953453	2L_3953453_SNP [dm3] 2L_3953453_SNP [dm6]	A	G	2.449e^-8	1.325e^-4	INTRON fred
2L	6213768	2L_6213768_SNP [dm3] 2L_6213768_SNP [dm6]	C	A	2.449e^-8	1.325e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	6213776	2L_6213776_SNP [dm3] 2L_6213776_SNP [dm6]	T	C	2.449e^-8	1.325e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	8589456	2L_8589456_SNP [dm3] 2L_8589456_SNP [dm6]	C	G	2.449e^-8	1.325e^-4	DOWNSTREAM CR43855 INTRON Sema-1a	TF binding site mE1_TFBS_kn
2L	8759002	2L_8759002_SNP [dm3] 2L_8759002_SNP [dm6]	A	C	2.449e^-8	1.325e^-4	INTERGENIC
2L	8759010	2L_8759010_SNP [dm3] 2L_8759010_SNP [dm6]	T	C	2.449e^-8	1.325e^-4	INTERGENIC
2L	8762016	2L_8762016_SNP [dm3] 2L_8762016_SNP [dm6]	T	G	2.449e^-8	1.325e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9886365	2L_9886365_SNP [dm3] 2L_9886365_SNP [dm6]	G	T	2.449e^-8	1.325e^-4	UPSTREAM CR44701 & 1 other INTERGENIC
2R	12797669	2R_12797669_DEL [dm3] 2R_16910164_DEL [dm6]	TCTTTG	T	2.449e^-8	1.325e^-4	INTERGENIC
2R	14456859	2R_14456859_SNP [dm3] 2R_18569354_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	2.449e^-8	1.325e^-4	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7699163	2R_7699163_SNP [dm3] 2R_11811658_SNP [dm6]	C	T	2.449e^-8	1.325e^-4	SYNONYMOUS_CODING ths	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10844553	3L_10844553_SNP [dm3] 3L_10851453_SNP [dm6]	T	A	2.449e^-8	1.325e^-4	UPSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1386218	3L_1386218_SNP [dm3] 3L_1386218_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	NON_SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1442059	3L_1442059_SNP [dm3] 3L_1442059_SNP [dm6]	G	T	2.449e^-8	1.325e^-4	INTRON Ptp61F
3L	504920	3L_504920_SNP [dm3] 3L_504920_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	INTRON klar
3L	9353049	3L_9353049_SNP [dm3] 3L_9359949_SNP [dm6]	C	A	2.449e^-8	1.325e^-4	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	21059297	3R_21059297_SNP [dm3] 3R_25233575_SNP [dm6]	T	G	2.449e^-8	1.325e^-4	DOWNSTREAM CG10420 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21648975	3R_21648975_SNP [dm3] 3R_25823253_SNP [dm6]	A	T	2.449e^-8	1.325e^-4	DOWNSTREAM CR44949 INTERGENIC
3R	24815834	3R_24815834_SNP [dm3] 3R_28990112_SNP [dm6]	A	G	2.449e^-8	1.325e^-4	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24824062	3R_24824062_SNP [dm3] 3R_28998340_SNP [dm6]	C	A	2.449e^-8	1.325e^-4	INTRON wat
3R	24825407	3R_24825407_SNP [dm3] 3R_28999685_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	INTRON wat
X	2975097	X_2975097_SNP [dm3] X_3081064_SNP [dm6]	T	G	2.449e^-8	1.325e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	2975316	X_2975316_SNP [dm3] X_3081283_SNP [dm6]	G	A	2.449e^-8	1.325e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7051644	2L_7051644_SNP [dm3] 2L_7051644_SNP [dm6]	T	C	2.525e^-8	1.362e^-4	SPLICE_SITE_REGION milt SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6699702	2L_6699702_SNP [dm3] 2L_6699702_SNP [dm6]	T	C	2.591e^-8	1.377e^-4	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8217097	2L_8217097_SNP [dm3] 2L_8217097_SNP [dm6]	A	G	2.591e^-8	1.377e^-4	SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349 & 1 other	TF binding site mE1_TFBS_HSA
2L	8217133	2L_8217133_SNP [dm3] 2L_8217133_SNP [dm6]	G	A	2.591e^-8	1.377e^-4	SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349 & 1 other	TF binding site mE1_TFBS_HSA
2L	9539863	2L_9539863_SNP [dm3] 2L_9539863_SNP [dm6]	G	A	2.591e^-8	1.377e^-4	UTR_3_PRIME Oatp30B UPSTREAM CG17855
2R	515711	2R_515711_SNP [dm3] 2R_4628206_SNP [dm6]	G	C	2.591e^-8	1.377e^-4	INTERGENIC
3L	18925624	3L_18925624_SNP [dm3] 3L_18932524_SNP [dm6]	A	T	3.002e^-8	1.557e^-4	INTRON CG32204
X	5006568	X_5006568_DEL [dm3] X_5112535_DEL [dm6]	GGAGA	G	3.140e^-8	1.557e^-4	INTRON rg & 1 other
2R	12022884	2R_12022884_SNP [dm3] 2R_16135379_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	INTRON spin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	20175530	2R_20175530_SNP [dm3] 2R_24288007_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20177151	2R_20177151_SNP [dm3] 2R_24289628_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	SPLICE_SITE_REGION nvy INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177392	2R_20177392_DEL [dm3] 2R_24289869_DEL [dm6]	TCTACTG	AT	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177404	2R_20177404_SNP [dm3] 2R_24289881_SNP [dm6]	A	T	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177405	2R_20177405_SNP [dm3] 2R_24289882_SNP [dm6]	A	G	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177407	2R_20177407_SNP [dm3] 2R_24289884_SNP [dm6]	A	T	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177409	2R_20177409_DEL [dm3] 2R_24289886_DEL [dm6]	AGT	A	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177414	2R_20177414_SNP [dm3] 2R_24289891_SNP [dm6]	G	A	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	20177417	2R_20177417_DEL [dm3] 2R_24289894_DEL [dm6]	AACTATGAACTATT...	A	3.164e^-8	1.557e^-4	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	15869053	3L_15869053_SNP [dm3] 3L_15875953_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	DOWNSTREAM CR44051 INTRON pHCl
3L	16274700	3L_16274700_SNP [dm3] 3L_16281600_SNP [dm6]	G	A	3.164e^-8	1.557e^-4	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16458445	3L_16458445_SNP [dm3] 3L_16465345_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	INTRON CG33158
3R	10000701	3R_10000701_SNP [dm3] 3R_14174979_SNP [dm6]	A	G	3.164e^-8	1.557e^-4	UTR_3_PRIME Dop1R1
3R	25032729	3R_25032729_DEL [dm3] 3R_29207007_DEL [dm6]	CC	A	3.164e^-8	1.557e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25244580	3R_25244580_SNP [dm3] 3R_29418858_SNP [dm6]	T	C	3.164e^-8	1.557e^-4	INTRON Ptp99A
3R	25245875	3R_25245875_SNP [dm3] 3R_29420153_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	INTRON Ptp99A
3R	25246191	3R_25246191_SNP [dm3] 3R_29420469_SNP [dm6]	G	A	3.164e^-8	1.557e^-4	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med
3R	25247136	3R_25247136_SNP [dm3] 3R_29421414_SNP [dm6]	G	A	3.164e^-8	1.557e^-4	INTRON Ptp99A
3R	25250664	3R_25250664_SNP [dm3] 3R_29424942_SNP [dm6]	A	G	3.164e^-8	1.557e^-4	INTRON Ptp99A
3R	26087264	3R_26087264_SNP [dm3] 3R_30261542_SNP [dm6]	G	T	3.164e^-8	1.557e^-4	INTERGENIC
3R	26087265	3R_26087265_SNP [dm3] 3R_30261543_SNP [dm6]	G	C	3.164e^-8	1.557e^-4	INTERGENIC
3R	26087267	3R_26087267_SNP [dm3] 3R_30261545_SNP [dm6]	T	C	3.164e^-8	1.557e^-4	INTERGENIC
3R	26151013	3R_26151013_SNP [dm3] 3R_30325291_SNP [dm6]	A	G	3.164e^-8	1.557e^-4	INTRON hdc
3R	26159255	3R_26159255_SNP [dm3] 3R_30333533_SNP [dm6]	C	G	3.164e^-8	1.557e^-4	INTRON hdc
3R	26424994	3R_26424994_SNP [dm3] 3R_30599272_SNP [dm6]	C	T	3.164e^-8	1.557e^-4	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11132022	3L_11132022_SNP [dm3] 3L_11138922_SNP [dm6]	C	T	3.919e^-8	1.923e^-4	INTRON CG32082
2L	17324010	2L_17324010_SNP [dm3] 2L_17324010_SNP [dm6]	G	T	3.951e^-8	1.933e^-4	INTERGENIC
2L	11943880	2L_11943880_SNP [dm3] 2L_11943880_SNP [dm6]	T	C	4.217e^-8	1.967e^-4	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2L	14280182	2L_14280182_SNP [dm3] 2L_14280182_SNP [dm6]	A	T	4.217e^-8	1.967e^-4	INTRON wb
2L	2123475	2L_2123475_SNP [dm3] 2L_2123475_SNP [dm6]	C	A	4.217e^-8	1.967e^-4	INTERGENIC
2L	5242142	2L_5242142_SNP [dm3] 2L_5242142_SNP [dm6]	C	G	4.217e^-8	1.967e^-4	UPSTREAM tRNA:CR31914 & 1 other INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11672581	2R_11672581_DEL [dm3] 2R_15785076_DEL [dm6]	TA	T	4.217e^-8	1.967e^-4	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20358084	2R_20358084_SNP [dm3] 2R_24470561_SNP [dm6]	G	A	4.217e^-8	1.967e^-4	INTRON CG13579
2R	7065112	2R_7065112_SNP [dm3] 2R_11177607_SNP [dm6]	C	T	4.217e^-8	1.967e^-4	INTRON shn
2R	7696905	2R_7696905_SNP [dm3] 2R_11809400_SNP [dm6]	A	C	4.217e^-8	1.967e^-4	INTRON ths
3R	16540795	3R_16540795_SNP [dm3] 3R_20715073_SNP [dm6]	G	A	4.217e^-8	1.967e^-4	UPSTREAM Oamb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16894554	3R_16894554_SNP [dm3] 3R_21068832_SNP [dm6]	C	T	4.217e^-8	1.967e^-4	SPLICE_SITE_REGION AnxB9 INTRON AnxB9	TF binding site mE1_TFBS_HSA
3R	20975287	3R_20975287_SNP [dm3] 3R_25149565_SNP [dm6]	C	T	4.217e^-8	1.967e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21453592	3R_21453592_SNP [dm3] 3R_25627870_SNP [dm6]	G	A	4.217e^-8	1.967e^-4	UPSTREAM Ssadh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21642357	3R_21642357_SNP [dm3] 3R_25816635_SNP [dm6]	T	C	4.217e^-8	1.967e^-4	DOWNSTREAM CG14354 INTERGENIC
3R	23796542	3R_23796542_SNP [dm3] 3R_27970820_SNP [dm6]	C	T	4.217e^-8	1.967e^-4	INTRON betaTub97EF
3R	23860863	3R_23860863_SNP [dm3] 3R_28035141_SNP [dm6]	A	C	4.217e^-8	1.967e^-4	INTRON CG34362
3R	24827268	3R_24827268_SNP [dm3] 3R_29001546_SNP [dm6]	T	C	4.217e^-8	1.967e^-4	INTRON wat
X	2975246	X_2975246_SNP [dm3] X_3081213_SNP [dm6]	T	A	4.217e^-8	1.967e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3137831	2L_3137831_SNP [dm3] 2L_3137831_SNP [dm6]	C	G	4.220e^-8	1.967e^-4	INTRON toc
2L	3373289	2L_3373289_SNP [dm3] 2L_3373289_SNP [dm6]	T	A	4.233e^-8	1.967e^-4	START_GAINED CG34394 UTR_5_PRIME CG34394 DOWNSTREAM CG15412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	9226503	3L_9226503_SNP [dm3] 3L_9233403_SNP [dm6]	C	A	4.233e^-8	1.967e^-4	INTERGENIC
2L	8759200	2L_8759200_SNP [dm3] 2L_8759200_SNP [dm6]	A	G	4.252e^-8	1.971e^-4	INTERGENIC
2R	7064852	2R_7064852_SNP [dm3] 2R_11177347_SNP [dm6]	T	C	4.289e^-8	1.983e^-4	INTRON shn
2R	10287097	2R_10287097_SNP [dm3] 2R_14399592_SNP [dm6]	C	T	4.338e^-8	2.000e^-4	INTERGENIC
2L	3388070	2L_3388070_SNP [dm3] 2L_3388070_SNP [dm6]	A	C	4.430e^-8	2.013e^-4	UTR_3_PRIME CG42460 UPSTREAM CR45301 & 1 other
2L	8589442	2L_8589442_SNP [dm3] 2L_8589442_SNP [dm6]	G	T	4.430e^-8	2.013e^-4	DOWNSTREAM CR43855 INTRON Sema-1a	TF binding site mE1_TFBS_kn
3L	464851	3L_464851_SNP [dm3] 3L_464851_SNP [dm6]	A	T	4.430e^-8	2.013e^-4	INTRON klar
3L	464971	3L_464971_SNP [dm3] 3L_464971_SNP [dm6]	G	C	4.430e^-8	2.013e^-4	INTRON klar
X	2975350	X_2975350_SNP [dm3] X_3081317_SNP [dm6]	T	A	4.430e^-8	2.013e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20806416	2L_20806416_SNP [dm3] 2L_20806416_SNP [dm6]	C	T	4.452e^-8	2.013e^-4	INTRON CG9328
2L	20806417	2L_20806417_SNP [dm3] 2L_20806417_SNP [dm6]	C	T	4.452e^-8	2.013e^-4	INTRON CG9328
3L	9370082	3L_9370082_SNP [dm3] 3L_9376982_SNP [dm6]	C	T	4.452e^-8	2.013e^-4	SYNONYMOUS_CODING Hsp26 DOWNSTREAM CG4461 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7159598	2L_7159598_DEL [dm3] 2L_7159598_DEL [dm6]	TT	T	4.749e^-8	2.116e^-4	INTERGENIC
3L	19208009	3L_19208009_SNP [dm3] 3L_19214909_SNP [dm6]	T	C	4.749e^-8	2.116e^-4	INTRON fz2
3R	26735279	3R_26735279_SNP [dm3] 3R_30909557_SNP [dm6]	C	A	4.749e^-8	2.116e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26735284	3R_26735284_SNP [dm3] 3R_30909562_SNP [dm6]	C	A	4.749e^-8	2.116e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27537759	3R_27537759_SNP [dm3] 3R_31712037_SNP [dm6]	C	T	4.749e^-8	2.116e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27537766	3R_27537766_SNP [dm3] 3R_31712044_SNP [dm6]	G	C	4.749e^-8	2.116e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14496959	3L_14496959_SNP [dm3] 3L_14503859_SNP [dm6]	T	C	5.065e^-8	2.246e^-4	INTRON bbg
3L	14496962	3L_14496962_INS [dm3] 3L_14503862_INS [dm6]	A	AA	5.065e^-8	2.246e^-4	INTRON bbg
3L	16290200	3L_16290200_SNP [dm3] 3L_16297100_SNP [dm6]	C	T	5.225e^-8	2.301e^-4	INTERGENIC
3L	19437948	3L_19437948_SNP [dm3] 3L_19444848_SNP [dm6]	G	A	5.225e^-8	2.301e^-4	INTRON CG33062
3R	10184508	3R_10184508_SNP [dm3] 3R_14358786_SNP [dm6]	C	T	5.225e^-8	2.301e^-4	SYNONYMOUS_CODING CG31320 INTRON NK7.1
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	5.321e^-8	2.337e^-4	UPSTREAM CG43173 & 1 other INTERGENIC
3L	10115426	3L_10115426_DEL [dm3] 3L_10122326_DEL [dm6]	GC	G	5.571e^-8	2.407e^-4	INTRON dpr6
3L	11708611	3L_11708611_SNP [dm3] 3L_11715511_SNP [dm6]	T	A	5.571e^-8	2.407e^-4	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15629977	3L_15629977_SNP [dm3] 3L_15636877_SNP [dm6]	T	A	5.571e^-8	2.407e^-4	INTRON comm3	TF binding site mE1_TFBS_bab1
3L	16305334	3L_16305334_SNP [dm3] 3L_16312234_SNP [dm6]	T	G	5.571e^-8	2.407e^-4	DOWNSTREAM CR32160 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	17790524	3L_17790524_SNP [dm3] 3L_17797424_SNP [dm6]	A	T	5.571e^-8	2.407e^-4	DOWNSTREAM NUCB1 INTRON CG42816
3R	25032542	3R_25032542_SNP [dm3] 3R_29206820_SNP [dm6]	T	A	5.571e^-8	2.407e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25245727	3R_25245727_SNP [dm3] 3R_29420005_SNP [dm6]	A	G	5.571e^-8	2.407e^-4	INTRON Ptp99A
3L	3107795	3L_3107795_INS [dm3] 3L_3107795_INS [dm6]	A	AT	6.923e^-8	2.903e^-4	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3867723	3L_3867723_SNP [dm3] 3L_3867723_SNP [dm6]	C	G	6.923e^-8	2.903e^-4	INTERGENIC
3R	4151663	3R_4151663_SNP [dm3] 3R_8325941_SNP [dm6]	G	A	6.923e^-8	2.903e^-4	DOWNSTREAM CG7443 INTRON Poxm
3R	6534873	3R_6534873_SNP [dm3] 3R_10709151_SNP [dm6]	G	A	6.923e^-8	2.903e^-4	SYNONYMOUS_CODING CG31373 UPSTREAM CG31278 DOWNSTREAM CG14689
X	11971163	X_11971163_DEL [dm3] X_12077130_DEL [dm6]	CTC	C	6.923e^-8	2.903e^-4	INTRON CR43960 & 1 other
X	12287028	X_12287028_SNP [dm3] X_12392995_SNP [dm6]	T	C	6.923e^-8	2.903e^-4	INTERGENIC
X	12287030	X_12287030_SNP [dm3] X_12392997_SNP [dm6]	T	A	6.923e^-8	2.903e^-4	INTERGENIC
X	12287098	X_12287098_SNP [dm3] X_12393065_SNP [dm6]	A	G	6.923e^-8	2.903e^-4	INTERGENIC
X	12917540	X_12917540_SNP [dm3] X_13023507_SNP [dm6]	A	T	6.923e^-8	2.903e^-4	DOWNSTREAM CG2209 INTRON rad
X	19551969	X_19551969_SNP [dm3] X_19657936_SNP [dm6]	A	C	6.923e^-8	2.903e^-4	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21260595	X_21260595_SNP [dm3] X_21389568_SNP [dm6]	A	C	6.923e^-8	2.903e^-4	SYNONYMOUS_CODING mst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21266220	X_21266220_SNP [dm3] X_21395193_SNP [dm6]	G	A	6.923e^-8	2.903e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8412632	X_8412632_SNP [dm3] X_8518599_SNP [dm6]	T	C	6.923e^-8	2.903e^-4	INTRON Nrg	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25436650	3R_25436650_SNP [dm3] 3R_29610928_SNP [dm6]	C	T	7.022e^-8	2.938e^-4	INTRON alph	TF binding site mE1_TFBS_chinmo
2L	15777870	2L_15777870_SNP [dm3] 2L_15777870_SNP [dm6]	G	A	7.178e^-8	2.968e^-4	INTERGENIC	TF binding site mE1_TFBS_kn
2R	15689573	2R_15689573_SNP [dm3] 2R_19802068_SNP [dm6]	T	C	7.266e^-8	2.968e^-4	UPSTREAM tRNA:K2:56EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	862085	2R_862085_INS [dm3] 2R_4974580_INS [dm6]	A	ATTAGGAA	7.266e^-8	2.968e^-4	INTRON Ir41a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	862087	2R_862087_MNP [dm3] 2R_4974582_MNP [dm6]	CCT	AAG	7.266e^-8	2.968e^-4	INTRON Ir41a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16311527	3R_16311527_SNP [dm3] 3R_20485805_SNP [dm6]	G	C	7.270e^-8	2.968e^-4	DOWNSTREAM CR44400 EXON CR44401
3R	21428299	3R_21428299_SNP [dm3] 3R_25602577_SNP [dm6]	G	A	7.270e^-8	2.968e^-4	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2R	7701521	2R_7701521_SNP [dm3] 2R_11814016_SNP [dm6]	A	G	7.291e^-8	2.968e^-4	UTR_3_PRIME ths
2L	18784575	2L_18784575_SNP [dm3] 2L_18784575_SNP [dm6]	C	G	7.323e^-8	2.968e^-4	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	7.323e^-8	2.968e^-4	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	1993296	2L_1993296_SNP [dm3] 2L_1993296_SNP [dm6]	G	C	7.323e^-8	2.968e^-4	INTERGENIC
2R	18938052	2R_18938052_DEL [dm3] 2R_23050529_DEL [dm6]	TG	T	7.323e^-8	2.968e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	508115	2R_508115_SNP [dm3] 2R_4620610_SNP [dm6]	G	C	7.323e^-8	2.968e^-4	SYNONYMOUS_CODING CG17486 DOWNSTREAM CR44101
2L	9540652	2L_9540652_SNP [dm3] 2L_9540652_SNP [dm6]	A	G	7.354e^-8	2.968e^-4	SYNONYMOUS_CODING CG17855 DOWNSTREAM Oatp30B	TF binding site mE1_TFBS_bab1
2R	523199	2R_523199_SNP [dm3] 2R_4635694_SNP [dm6]	C	G	7.354e^-8	2.968e^-4	INTERGENIC	transposable element FlyBase
2L	13330236	2L_13330236_DEL [dm3] 2L_13330236_DEL [dm6]	TGAATGTAT	T	7.382e^-8	2.968e^-4	INTRON CG43778
2L	15859767	2L_15859767_DEL [dm3] 2L_15859767_DEL [dm6]	GGGCTAAAG	G	7.382e^-8	2.968e^-4	INTERGENIC
2L	18759735	2L_18759735_SNP [dm3] 2L_18759735_SNP [dm6]	T	C	7.382e^-8	2.968e^-4	INTERGENIC
3L	17183465	3L_17183465_SNP [dm3] 3L_17190365_SNP [dm6]	A	G	7.384e^-8	2.968e^-4	INTRON Rbp6
2R	14693535	2R_14693535_SNP [dm3] 2R_18806030_SNP [dm6]	T	C	7.459e^-8	2.991e^-4	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15756144	3L_15756144_SNP [dm3] 3L_15763044_SNP [dm6]	T	A	7.520e^-8	3.004e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11966428	2L_11966428_DEL [dm3] 2L_11966428_DEL [dm6]	TTTCGGT	T	7.620e^-8	3.004e^-4	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11967854	2L_11967854_INS [dm3] 2L_11967854_INS [dm6]	A	AGC	7.620e^-8	3.004e^-4	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9574060	2L_9574060_SNP [dm3] 2L_9574060_SNP [dm6]	G	A	7.620e^-8	3.004e^-4	SYNONYMOUS_CODING Mtpalpha DOWNSTREAM CG3838
3L	733915	3L_733915_SNP [dm3] 3L_733915_SNP [dm6]	G	T	7.620e^-8	3.004e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	21353007	3R_21353007_SNP [dm3] 3R_25527285_SNP [dm6]	C	A	7.620e^-8	3.004e^-4	INTRON msi
3R	24826577	3R_24826577_SNP [dm3] 3R_29000855_SNP [dm6]	T	A	7.620e^-8	3.004e^-4	INTRON wat
X	8551477	X_8551477_SNP [dm3] X_8657444_SNP [dm6]	C	T	7.628e^-8	3.004e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8888316	3R_8888316_SNP [dm3] 3R_13062594_SNP [dm6]	A	G	7.654e^-8	3.004e^-4	UTR_5_PRIME sim INTRON sim
X	2975099	X_2975099_SNP [dm3] X_3081066_SNP [dm6]	T	G	7.654e^-8	3.004e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2R	20097220	2R_20097220_SNP [dm3] 2R_24209697_SNP [dm6]	C	A	7.841e^-8	3.058e^-4	INTERGENIC
3L	12163861	3L_12163861_SNP [dm3] 3L_12170761_SNP [dm6]	C	G	7.841e^-8	3.058e^-4	INTRON Rh7
3L	14496843	3L_14496843_SNP [dm3] 3L_14503743_SNP [dm6]	C	T	7.841e^-8	3.058e^-4	INTRON bbg
3R	26717658	3R_26717658_SNP [dm3] 3R_30891936_SNP [dm6]	C	G	8.371e^-8	3.250e^-4	INTERGENIC
2R	17471693	2R_17471693_SNP [dm3] 2R_21584188_SNP [dm6]	G	A	8.385e^-8	3.250e^-4	NON_SYNONYMOUS_CODING CG30222
3L	15489646	3L_15489646_SNP [dm3] 3L_15496546_SNP [dm6]	T	A	8.385e^-8	3.250e^-4	UPSTREAM CG12355 & 1 other INTERGENIC
3R	25602983	3R_25602983_SNP [dm3] 3R_29777261_SNP [dm6]	G	A	8.596e^-8	3.324e^-4	INTRON kay
2L	10115101	2L_10115101_SNP [dm3] 2L_10115101_SNP [dm6]	G	A	8.910e^-8	3.431e^-4	INTRON CG44153 & 1 other
2L	10115117	2L_10115117_SNP [dm3] 2L_10115117_SNP [dm6]	C	T	8.910e^-8	3.431e^-4	INTRON CG44153 & 1 other
2L	20787318	2L_20787318_SNP [dm3] 2L_20787318_SNP [dm6]	C	A	8.972e^-8	3.448e^-4	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
3L	16394805	3L_16394805_SNP [dm3] 3L_16401705_SNP [dm6]	C	A	9.857e^-8	3.780e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8100589	2L_8100589_DEL [dm3] 2L_8100589_DEL [dm6]	TT	T	9.901e^-8	3.782e^-4	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8100612	2L_8100612_SNP [dm3] 2L_8100612_SNP [dm6]	G	A	9.901e^-8	3.782e^-4	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11119384	3R_11119384_INS [dm3] 3R_15293662_INS [dm6]	C	CAGTTTGATCATATGTTGGT...	1.085e^-7	4.135e^-4	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4945554	X_4945554_SNP [dm3] X_5051521_SNP [dm6]	T	C	1.147e^-7	4.355e^-4	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	8409721	X_8409721_SNP [dm3] X_8515688_SNP [dm6]	G	A	1.147e^-7	4.355e^-4	INTRON CG33181
3R	6620490	3R_6620490_SNP [dm3] 3R_10794768_SNP [dm6]	C	G	1.163e^-7	4.406e^-4	SYNONYMOUS_CODING CG14692
3L	3107793	3L_3107793_SNP [dm3] 3L_3107793_SNP [dm6]	C	T	1.208e^-7	4.559e^-4	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17097699	X_17097699_SNP [dm3] X_17203666_SNP [dm6]	T	C	1.208e^-7	4.559e^-4	SYNONYMOUS_CODING CG5070
2L	15773630	2L_15773630_SNP [dm3] 2L_15773630_SNP [dm6]	A	C	1.235e^-7	4.630e^-4	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
2L	15773632	2L_15773632_SNP [dm3] 2L_15773632_SNP [dm6]	T	A	1.235e^-7	4.630e^-4	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
2L	15773634	2L_15773634_SNP [dm3] 2L_15773634_SNP [dm6]	G	T	1.235e^-7	4.630e^-4	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
3R	12144624	3R_12144624_SNP [dm3] 3R_16318902_SNP [dm6]	G	T	1.245e^-7	4.657e^-4	INTRON Sulf1
3R	24040271	3R_24040271_SNP [dm3] 3R_28214549_SNP [dm6]	A	T	1.252e^-7	4.676e^-4	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
2L	1021697	2L_1021697_SNP [dm3] 2L_1021697_SNP [dm6]	A	G	1.263e^-7	4.698e^-4	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19228720	2R_19228720_SNP [dm3] 2R_23341197_SNP [dm6]	G	A	1.263e^-7	4.698e^-4	INTERGENIC
2L	5841005	2L_5841005_SNP [dm3] 2L_5841005_SNP [dm6]	G	A	1.312e^-7	4.852e^-4	INTRON TrissinR
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	1.312e^-7	4.852e^-4	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	9577335	2L_9577335_SNP [dm3] 2L_9577335_SNP [dm6]	A	G	1.312e^-7	4.852e^-4	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5927942	3L_5927942_DEL [dm3] 3L_5934842_DEL [dm6]	TT	T	1.316e^-7	4.857e^-4	INTRON CG33993
3R	18054248	3R_18054248_DEL [dm3] 3R_22228526_DEL [dm6]	TT	T	1.323e^-7	4.872e^-4	INTRON SKIP
3L	9544910	3L_9544910_SNP [dm3] 3L_9551810_SNP [dm6]	C	G	1.326e^-7	4.872e^-4	INTRON CG42673
2L	10349674	2L_10349674_SNP [dm3] 2L_10349674_SNP [dm6]	A	T	1.330e^-7	4.876e^-4	INTRON CG34367
2R	10527027	2R_10527027_SNP [dm3] 2R_14639522_SNP [dm6]	C	T	1.386e^-7	5.072e^-4	STOP_GAINED CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_inv
2R	13731299	2R_13731299_SNP [dm3] 2R_17843794_SNP [dm6]	A	T	1.429e^-7	5.220e^-4	UTR_5_PRIME olf186-F DOWNSTREAM grh	TF binding site mE1_TFBS_HSA
3R	22823034	3R_22823034_SNP [dm3] 3R_26997312_SNP [dm6]	C	T	1.466e^-7	5.333e^-4	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22823035	3R_22823035_SNP [dm3] 3R_26997313_SNP [dm6]	C	A	1.466e^-7	5.333e^-4	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15462902	3L_15462902_SNP [dm3] 3L_15469802_SNP [dm6]	G	A	1.488e^-7	5.392e^-4	INTERGENIC
3L	20122516	3L_20122516_INS [dm3] 3L_20129416_INS [dm6]	G	GG	1.488e^-7	5.392e^-4	SPLICE_SITE_REGION gig INTRON gig	TF binding site BDTNP1_TFBS_twi
2L	10115104	2L_10115104_SNP [dm3] 2L_10115104_SNP [dm6]	C	A	1.554e^-7	5.601e^-4	INTRON CG44153 & 1 other
2L	9981926	2L_9981926_SNP [dm3] 2L_9981926_SNP [dm6]	C	T	1.554e^-7	5.601e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4517406	2R_4517406_SNP [dm3] 2R_8629901_SNP [dm6]	C	T	1.554e^-7	5.601e^-4	SYNONYMOUS_CODING CG14749 DOWNSTREAM CG8635	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12103557	3L_12103557_SNP [dm3] 3L_12110457_SNP [dm6]	C	T	1.754e^-7	6.309e^-4	INTERGENIC
3R	21500049	3R_21500049_SNP [dm3] 3R_25674327_SNP [dm6]	C	T	1.872e^-7	6.718e^-4	INTRON Lgr3
3L	7103571	3L_7103571_SNP [dm3] 3L_7110471_SNP [dm6]	G	A	1.901e^-7	6.811e^-4	INTRON form3
3L	13459336	3L_13459336_DEL [dm3] 3L_13466236_DEL [dm6]	CC	C	1.997e^-7	7.127e^-4	UTR_3_PRIME CG10089 DOWNSTREAM CG10089 & 1 other
3R	25837363	3R_25837363_SNP [dm3] 3R_30011641_SNP [dm6]	T	C	1.997e^-7	7.127e^-4	INTRON CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15483685	3L_15483685_DEL [dm3] 3L_15490585_DEL [dm6]	CAGATGCCC	C	2.216e^-7	7.892e^-4	INTERGENIC
2R	16501538	2R_16501538_SNP [dm3] 2R_20614033_SNP [dm6]	G	A	2.360e^-7	8.389e^-4	INTRON Hil	TF binding site BDTNP1_TFBS_dl
3R	17689525	3R_17689525_SNP [dm3] 3R_21863803_SNP [dm6]	T	A	2.365e^-7	8.389e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23796608	3R_23796608_SNP [dm3] 3R_27970886_SNP [dm6]	G	T	2.380e^-7	8.428e^-4	INTRON betaTub97EF
2L	9515308	2L_9515308_SNP [dm3] 2L_9515308_SNP [dm6]	C	T	2.415e^-7	8.536e^-4	SPLICE_SITE_REGION CG33298 INTRON CG33298
3R	16890234	3R_16890234_SNP [dm3] 3R_21064512_SNP [dm6]	C	T	2.456e^-7	8.646e^-4	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16890334	3R_16890334_SNP [dm3] 3R_21064612_SNP [dm6]	A	G	2.456e^-7	8.646e^-4	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22863354	3R_22863354_SNP [dm3] 3R_27037632_SNP [dm6]	C	G	2.527e^-7	8.873e^-4	INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	18309003	3R_18309003_SNP [dm3] 3R_22483281_SNP [dm6]	T	C	2.530e^-7	8.873e^-4	SYNONYMOUS_CODING Nrx-1 DOWNSTREAM Nrx-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5879556	2L_5879556_SNP [dm3] 2L_5879556_SNP [dm6]	C	A	2.555e^-7	8.909e^-4	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18002082	3R_18002082_SNP [dm3] 3R_22176360_SNP [dm6]	G	A	2.555e^-7	8.909e^-4	INTRON SKIP
3R	18871879	3R_18871879_SNP [dm3] 3R_23046157_SNP [dm6]	C	A	2.555e^-7	8.909e^-4	INTRON CG17121
2R	15436383	2R_15436383_DEL [dm3] 2R_19548878_DEL [dm6]	GG	G	2.655e^-7	9.222e^-4	INTRON sm
3R	25032733	3R_25032733_SNP [dm3] 3R_29207011_SNP [dm6]	G	A	2.655e^-7	9.222e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20176252	2R_20176252_SNP [dm3] 2R_24288729_SNP [dm6]	G	A	3.365e^-7	0.001	NON_SYNONYMOUS_CODING nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7382464	2R_7382464_SNP [dm3] 2R_11494959_SNP [dm6]	G	T	3.365e^-7	0.001	INTRON inv
3L	16205719	3L_16205719_DEL [dm3] 3L_16212619_DEL [dm6]	ACT	A	3.365e^-7	0.001	DOWNSTREAM CG13073 INTERGENIC
3R	8498410	3R_8498410_SNP [dm3] 3R_12672688_SNP [dm6]	C	T	3.527e^-7	0.001	NON_SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11682988	3L_11682988_SNP [dm3] 3L_11689888_SNP [dm6]	T	A	4.108e^-7	0.001	UTR_3_PRIME Sug & 1 other
2R	9871438	2R_9871438_SNP [dm3] 2R_13983933_SNP [dm6]	C	A	4.200e^-7	0.001	SYNONYMOUS_CODING CG8067 UPSTREAM Ctf4 DOWNSTREAM RN-tre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5027498	2L_5027498_SNP [dm3] 2L_5027498_SNP [dm6]	C	T	5.898e^-7	0.002	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7538379	2L_7538379_SNP [dm3] 2L_7538379_SNP [dm6]	C	T	5.898e^-7	0.002	INTRON RapGAP1
2R	6931436	2R_6931436_SNP [dm3] 2R_11043931_SNP [dm6]	G	A	5.898e^-7	0.002	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13844237	3R_13844237_INS [dm3] 3R_18018515_INS [dm6]	C	CCAACAG	5.908e^-7	0.002	UTR_3_PRIME cpo UPSTREAM DNaseII
X	4124624	X_4124624_INS [dm3] X_4230591_INS [dm6]	G	GAGCC	5.979e^-7	0.002	INTERGENIC
2L	14281064	2L_14281064_SNP [dm3] 2L_14281064_SNP [dm6]	A	G	6.192e^-7	0.002	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	18583792	3R_18583792_DEL [dm3] 3R_22758070_DEL [dm6]	CCACTGGCCATGGTG...	C	6.925e^-7	0.002	DOWNSTREAM CG4725 INTRON Usp12-46 & 1 other
2R	12401343	2R_12401343_INS [dm3] 2R_16513838_INS [dm6]	T	TT	7.590e^-7	0.002	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	6465917	3R_6465917_DEL [dm3] 3R_10640195_DEL [dm6]	AATA	A	7.611e^-7	0.002	UPSTREAM hth EXON CR44018	TF binding site BDTNP1_TFBS_twi
3L	15592513	3L_15592513_SNP [dm3] 3L_15599413_SNP [dm6]	T	C	8.334e^-7	0.002	INTRON RhoGAP71E
3L	14618920	3L_14618920_SNP [dm3] 3L_14625820_SNP [dm6]	T	C	8.602e^-7	0.002	INTRON CG9628	TF binding site BDTNP1_TFBS_dl
3L	15573192	3L_15573192_SNP [dm3] 3L_15580092_SNP [dm6]	A	T	8.602e^-7	0.002	SYNONYMOUS_CODING mrn UPSTREAM CG12301	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7404180	2L_7404180_INS [dm3] 2L_7404180_INS [dm6]	C	CT	9.295e^-7	0.002	INTRON CG5171
2L	14714345	2L_14714345_SNP [dm3] 2L_14714345_SNP [dm6]	A	C	9.730e^-7	0.002	UTR_3_PRIME CG34165
2R	13837381	2R_13837381_SNP [dm3] 2R_17949876_SNP [dm6]	C	A	9.841e^-7	0.002	INTERGENIC
X	4880347	X_4880347_SNP [dm3] X_4986314_SNP [dm6]	A	C	1.017e^-6	0.002	INTRON CR44833	regulatory region REDfly_CRMs
3R	18475212	3R_18475212_SNP [dm3] 3R_22649490_SNP [dm6]	C	T	1.021e^-6	0.002	INTRON CG45058
3L	7203088	3L_7203088_SNP [dm3] 3L_7209988_SNP [dm6]	C	A	1.077e^-6	0.002	INTERGENIC
3L	7203124	3L_7203124_SNP [dm3] 3L_7210024_SNP [dm6]	C	G	1.077e^-6	0.002	INTERGENIC
3L	7203226	3L_7203226_DEL [dm3] 3L_7210126_DEL [dm6]	TCATT	T	1.077e^-6	0.002	INTERGENIC
3L	7203271	3L_7203271_SNP [dm3] 3L_7210171_SNP [dm6]	T	G	1.077e^-6	0.002	INTERGENIC
3L	7203665	3L_7203665_SNP [dm3] 3L_7210565_SNP [dm6]	G	A	1.077e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_inv
2L	3353291	2L_3353291_SNP [dm3] 2L_3353291_SNP [dm6]	C	A	1.241e^-6	0.002	NON_SYNONYMOUS_CODING E23
2L	8759175	2L_8759175_SNP [dm3] 2L_8759175_SNP [dm6]	A	G	1.423e^-6	0.002	INTERGENIC
2L	10521834	2L_10521834_SNP [dm3] 2L_10521834_SNP [dm6]	T	C	1.462e^-6	0.002	INTERGENIC
2R	2822386	2R_2822386_SNP [dm3] 2R_6934881_SNP [dm6]	C	A	1.486e^-6	0.002	NON_SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9802420	2R_9802420_DEL [dm3] 2R_13914915_DEL [dm6]	AA	A	1.486e^-6	0.002	INTRON shot
3R	26982702	3R_26982702_SNP [dm3] 3R_31156980_SNP [dm6]	T	C	1.496e^-6	0.002	INTRON Gycbeta100B
2L	20826580	2L_20826580_SNP [dm3] 2L_20826580_SNP [dm6]	A	G	1.497e^-6	0.002	INTRON CG9331
2L	7487843	2L_7487843_SNP [dm3] 2L_7487843_SNP [dm6]	C	G	1.536e^-6	0.002	INTRON Ziz
2R	9577377	2R_9577377_SNP [dm3] 2R_13689872_SNP [dm6]	T	G	1.587e^-6	0.002	INTRON fas
3L	21373495	3L_21373495_DEL [dm3] 3L_21380395_DEL [dm6]	CCACCCAGCCCCACACCCAA...	C	1.635e^-6	0.002	INTERGENIC
3L	7203468	3L_7203468_SNP [dm3] 3L_7210368_SNP [dm6]	G	A	1.768e^-6	0.002	INTERGENIC
3R	20719702	3R_20719702_SNP [dm3] 3R_24893980_SNP [dm6]	A	G	2.179e^-6	0.002	UPSTREAM CG11069 INTRON CG31121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10149761	2L_10149761_SNP [dm3] 2L_10149761_SNP [dm6]	A	C	2.190e^-6	0.002	INTRON CG44153 & 1 other
2L	10369283	2L_10369283_SNP [dm3] 2L_10369283_SNP [dm6]	G	T	2.190e^-6	0.002	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad
2L	10369543	2L_10369543_SNP [dm3] 2L_10369543_SNP [dm6]	G	A	2.190e^-6	0.002	INTRON rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14430622	2L_14430622_SNP [dm3] 2L_14430622_SNP [dm6]	C	T	2.190e^-6	0.002	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16261678	2L_16261678_SNP [dm3] 2L_16261678_SNP [dm6]	A	G	2.190e^-6	0.002	UTR_5_PRIME twe UPSTREAM CG4935	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
2L	21110183	2L_21110183_SNP [dm3] 2L_21110183_SNP [dm6]	C	T	2.190e^-6	0.002	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
2L	3676935	2L_3676935_SNP [dm3] 2L_3676935_SNP [dm6]	T	A	2.190e^-6	0.002	INTRON CG34340
2L	9918544	2L_9918544_SNP [dm3] 2L_9918544_SNP [dm6]	A	T	2.190e^-6	0.002	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11827054	2R_11827054_SNP [dm3] 2R_15939549_SNP [dm6]	G	A	2.190e^-6	0.002	UPSTREAM Mlf INTRON Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11827079	2R_11827079_SNP [dm3] 2R_15939574_SNP [dm6]	C	T	2.190e^-6	0.002	UPSTREAM Mlf INTRON Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12520522	2R_12520522_SNP [dm3] 2R_16633017_SNP [dm6]	C	T	2.190e^-6	0.002	SPLICE_SITE_REGION Alk INTRON Alk	TF binding site mE1_TFBS_cad
2R	12520556	2R_12520556_SNP [dm3] 2R_16633051_SNP [dm6]	A	G	2.190e^-6	0.002	INTRON Alk	TF binding site mE1_TFBS_cad
2R	12520587	2R_12520587_SNP [dm3] 2R_16633082_SNP [dm6]	A	G	2.190e^-6	0.002	SPLICE_SITE_REGION Alk SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad
2R	12520704	2R_12520704_SNP [dm3] 2R_16633199_SNP [dm6]	C	T	2.190e^-6	0.002	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13191067	2R_13191067_INS [dm3] 2R_17303562_INS [dm6]	T	TAAGACTT	2.190e^-6	0.002	INTRON mbl
2R	13700371	2R_13700371_SNP [dm3] 2R_17812866_SNP [dm6]	T	A	2.190e^-6	0.002	INTRON grh	TF binding site BDTNP1_TFBS_dl
2R	14585780	2R_14585780_SNP [dm3] 2R_18698275_SNP [dm6]	A	C	2.190e^-6	0.002	DOWNSTREAM CG15071 INTRON Sik3
2R	15457606	2R_15457606_SNP [dm3] 2R_19570101_SNP [dm6]	G	T	2.190e^-6	0.002	INTRON sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18618874	2R_18618874_SNP [dm3] 2R_22731369_SNP [dm6]	C	T	2.190e^-6	0.002	SYNONYMOUS_CODING jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4929702	3L_4929702_SNP [dm3] 3L_4929702_SNP [dm6]	A	G	2.190e^-6	0.002	DOWNSTREAM CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	7015001	3L_7015001_SNP [dm3] 3L_7021901_SNP [dm6]	A	G	2.190e^-6	0.002	INTRON Mp
3L	7707279	3L_7707279_SNP [dm3] 3L_7714179_SNP [dm6]	C	T	2.190e^-6	0.002	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7707294	3L_7707294_SNP [dm3] 3L_7714194_SNP [dm6]	T	C	2.190e^-6	0.002	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8327574	3L_8327574_DEL [dm3] 3L_8334474_DEL [dm6]	TT	T	2.190e^-6	0.002	INTERGENIC
3R	16991484	3R_16991484_SNP [dm3] 3R_21165762_SNP [dm6]	A	G	2.190e^-6	0.002	SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
3R	8911727	3R_8911727_SNP [dm3] 3R_13086005_SNP [dm6]	A	C	2.190e^-6	0.002	UPSTREAM CG43063 DOWNSTREAM CR44967 INTERGENIC
3R	8911739	3R_8911739_SNP [dm3] 3R_13086017_SNP [dm6]	A	T	2.190e^-6	0.002	UPSTREAM CG43063 DOWNSTREAM CR44967 INTERGENIC
X	13605040	X_13605040_SNP [dm3] X_13711007_SNP [dm6]	A	C	2.190e^-6	0.002	INTRON CG9940 & 1 other
2L	16981862	2L_16981862_SNP [dm3] 2L_16981862_SNP [dm6]	C	A	2.223e^-6	0.002	UPSTREAM CR44408 DOWNSTREAM CG44406 INTRON beat-IIIb
2L	6948932	2L_6948932_SNP [dm3] 2L_6948932_SNP [dm6]	C	A	2.223e^-6	0.002	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6949027	2L_6949027_SNP [dm3] 2L_6949027_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6949098	2L_6949098_SNP [dm3] 2L_6949098_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6949351	2L_6949351_SNP [dm3] 2L_6949351_SNP [dm6]	T	C	2.223e^-6	0.002	UTR_3_PRIME Gas41 UPSTREAM ihog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6949528	2L_6949528_SNP [dm3] 2L_6949528_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING Gas41 UPSTREAM ihog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6950199	2L_6950199_SNP [dm3] 2L_6950199_SNP [dm6]	T	C	2.223e^-6	0.002	START_GAINED Gas41 UTR_5_PRIME Gas41 UPSTREAM SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2L	6950373	2L_6950373_SNP [dm3] 2L_6950373_SNP [dm6]	T	G	2.223e^-6	0.002	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6950380	2L_6950380_SNP [dm3] 2L_6950380_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6950381	2L_6950381_SNP [dm3] 2L_6950381_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6950400	2L_6950400_SNP [dm3] 2L_6950400_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6950733	2L_6950733_SNP [dm3] 2L_6950733_SNP [dm6]	C	G	2.223e^-6	0.002	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6951233	2L_6951233_SNP [dm3] 2L_6951233_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8027447	2L_8027447_SNP [dm3] 2L_8027447_SNP [dm6]	G	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG7367 DOWNSTREAM Tg
2L	8027471	2L_8027471_SNP [dm3] 2L_8027471_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING CG7367 DOWNSTREAM Tg
2L	8032747	2L_8032747_SNP [dm3] 2L_8032747_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG7367 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8032759	2L_8032759_SNP [dm3] 2L_8032759_SNP [dm6]	T	G	2.223e^-6	0.002	INTRON CG7367 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	10312487	2R_10312487_SNP [dm3] 2R_14424982_SNP [dm6]	A	T	2.223e^-6	0.002	DOWNSTREAM CG17386 INTERGENIC
2R	10578128	2R_10578128_SNP [dm3] 2R_14690623_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON mspo
2R	10584130	2R_10584130_SNP [dm3] 2R_14696625_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON mspo
2R	10874173	2R_10874173_DEL [dm3] 2R_14986668_DEL [dm6]	TT	T	2.223e^-6	0.002	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10874235	2R_10874235_SNP [dm3] 2R_14986730_SNP [dm6]	C	T	2.223e^-6	0.002	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10874243	2R_10874243_SNP [dm3] 2R_14986738_SNP [dm6]	A	G	2.223e^-6	0.002	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10876484	2R_10876484_SNP [dm3] 2R_14988979_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG7639 INTRON pcs	TF binding site mE1_TFBS_sens
2R	10888116	2R_10888116_SNP [dm3] 2R_15000611_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10958464	2R_10958464_SNP [dm3] 2R_15070959_SNP [dm6]	C	G	2.223e^-6	0.002	INTERGENIC
2R	10958602	2R_10958602_SNP [dm3] 2R_15071097_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	10961037	2R_10961037_DEL [dm3] 2R_15073532_DEL [dm6]	AC	A	2.223e^-6	0.002	INTERGENIC
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	2.223e^-6	0.002	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	11141160	2R_11141160_SNP [dm3] 2R_15253655_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON scb
2R	11142594	2R_11142594_SNP [dm3] 2R_15255089_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON scb	TF binding site mE1_TFBS_cad
2R	11142647	2R_11142647_SNP [dm3] 2R_15255142_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2R	11191124	2R_11191124_SNP [dm3] 2R_15303619_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON Trpm
2R	11191125	2R_11191125_SNP [dm3] 2R_15303620_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON Trpm
2R	11191190	2R_11191190_SNP [dm3] 2R_15303685_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON Trpm
2R	11191201	2R_11191201_SNP [dm3] 2R_15303696_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON Trpm
2R	11192518	2R_11192518_SNP [dm3] 2R_15305013_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON Trpm
2R	11192672	2R_11192672_SNP [dm3] 2R_15305167_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON Trpm
2R	11276363	2R_11276363_SNP [dm3] 2R_15388858_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	11276634	2R_11276634_SNP [dm3] 2R_15389129_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC
2R	11278513	2R_11278513_SNP [dm3] 2R_15391008_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	11304749	2R_11304749_SNP [dm3] 2R_15417244_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG43729
2R	11315285	2R_11315285_SNP [dm3] 2R_15427780_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG34188 INTRON CG43729
2R	11328911	2R_11328911_SNP [dm3] 2R_15441406_SNP [dm6]	G	C	2.223e^-6	0.002	INTRON CG43729
2R	11390710	2R_11390710_SNP [dm3] 2R_15503205_SNP [dm6]	A	C	2.223e^-6	0.002	NON_SYNONYMOUS_CODING Ir52b UPSTREAM Ir52c
2R	11391501	2R_11391501_SNP [dm3] 2R_15503996_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2R	11391509	2R_11391509_SNP [dm3] 2R_15504004_SNP [dm6]	G	T	2.223e^-6	0.002	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2R	11425350	2R_11425350_SNP [dm3] 2R_15537845_SNP [dm6]	G	T	2.223e^-6	0.002	UPSTREAM CG30467 DOWNSTREAM CG30471 INTERGENIC
2R	11434754	2R_11434754_SNP [dm3] 2R_15547249_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG8192	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11434762	2R_11434762_DEL [dm3] 2R_15547257_DEL [dm6]	TT	T	2.223e^-6	0.002	INTRON CG8192	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11442387	2R_11442387_SNP [dm3] 2R_15554882_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM CG12963 INTERGENIC
2R	11466907	2R_11466907_DEL [dm3] 2R_15579402_DEL [dm6]	TGTC	CAG	2.223e^-6	0.002	INTERGENIC
2R	11481881	2R_11481881_SNP [dm3] 2R_15594376_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	11483409	2R_11483409_SNP [dm3] 2R_15595904_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC
2R	11484429	2R_11484429_SNP [dm3] 2R_15596924_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC
2R	11484434	2R_11484434_SNP [dm3] 2R_15596929_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	11498171	2R_11498171_SNP [dm3] 2R_15610666_SNP [dm6]	G	T	2.223e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11498225	2R_11498225_SNP [dm3] 2R_15610720_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11502092	2R_11502092_SNP [dm3] 2R_15614587_SNP [dm6]	C	T	2.223e^-6	0.002	START_GAINED CG42524 UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11502756	2R_11502756_SNP [dm3] 2R_15615251_SNP [dm6]	A	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11502761	2R_11502761_SNP [dm3] 2R_15615256_SNP [dm6]	T	A	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG42524
2R	11554224	2R_11554224_SNP [dm3] 2R_15666719_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11554335	2R_11554335_SNP [dm3] 2R_15666830_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11580458	2R_11580458_SNP [dm3] 2R_15692953_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG30087 DOWNSTREAM CG30088 EXON CR44372	TF binding site BDTNP1_TFBS_dl
2R	11600062	2R_11600062_SNP [dm3] 2R_15712557_SNP [dm6]	T	C	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG30083
2R	11619199	2R_11619199_SNP [dm3] 2R_15731694_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG30089
2R	11693042	2R_11693042_INS [dm3] 2R_15805537_INS [dm6]	C	CCATAC	2.223e^-6	0.002	INTRON tun & 1 other
2R	11727793	2R_11727793_SNP [dm3] 2R_15840288_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	11733910	2R_11733910_SNP [dm3] 2R_15846405_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON tun & 1 other
2R	11743058	2R_11743058_SNP [dm3] 2R_15855553_SNP [dm6]	A	C	2.223e^-6	0.002	UTR_3_PRIME tun UPSTREAM CG12970 DOWNSTREAM tun
2R	11846879	2R_11846879_SNP [dm3] 2R_15959374_SNP [dm6]	G	A	2.223e^-6	0.002	DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11870577	2R_11870577_SNP [dm3] 2R_15983072_SNP [dm6]	T	G	2.223e^-6	0.002	SYNONYMOUS_CODING Strn-Mlck
2R	11870600	2R_11870600_SNP [dm3] 2R_15983095_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING Strn-Mlck
2R	11888197	2R_11888197_SNP [dm3] 2R_16000692_SNP [dm6]	T	C	2.223e^-6	0.002	UPSTREAM CG8370 & 1 other INTRON ATPCL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	11946551	2R_11946551_DEL [dm3] 2R_16059046_DEL [dm6]	CGGCAGGAGGAGCCGAGGC...	G	2.223e^-6	0.002
2R	11965271	2R_11965271_SNP [dm3] 2R_16077766_SNP [dm6]	G	C	2.223e^-6	0.002	DOWNSTREAM CR43415 INTERGENIC
2R	12007439	2R_12007439_INS [dm3] 2R_16119934_INS [dm6]	T	TTT	2.223e^-6	0.002	UPSTREAM Jhe DOWNSTREAM Jhedup INTRON Jhe
2R	12009154	2R_12009154_SNP [dm3] 2R_16121649_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Jhe
2R	12009443	2R_12009443_SNP [dm3] 2R_16121938_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON Jhe
2R	12009452	2R_12009452_SNP [dm3] 2R_16121947_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON Jhe
2R	12014271	2R_12014271_SNP [dm3] 2R_16126766_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON spin
2R	12021565	2R_12021565_SNP [dm3] 2R_16134060_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON spin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12032080	2R_12032080_SNP [dm3] 2R_16144575_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Aats-cys
2R	12032110	2R_12032110_SNP [dm3] 2R_16144605_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Aats-cys
2R	12032479	2R_12032479_SNP [dm3] 2R_16144974_SNP [dm6]	C	T	2.223e^-6	0.002	SPLICE_SITE_REGION Aats-cys DOWNSTREAM Ext2 INTRON Aats-cys
2R	12032543	2R_12032543_SNP [dm3] 2R_16145038_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
2R	12036334	2R_12036334_SNP [dm3] 2R_16148829_SNP [dm6]	A	T	2.223e^-6	0.002	UTR_3_PRIME CG10731 UPSTREAM Ext2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12036424	2R_12036424_DEL [dm3] 2R_16148919_DEL [dm6]	TA	T	2.223e^-6	0.002	UTR_3_PRIME CG10731 UPSTREAM Ext2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12036670	2R_12036670_SNP [dm3] 2R_16149165_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12036915	2R_12036915_SNP [dm3] 2R_16149410_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12037051	2R_12037051_SNP [dm3] 2R_16149546_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12037171	2R_12037171_SNP [dm3] 2R_16149666_SNP [dm6]	A	C	2.223e^-6	0.002	UTR_5_PRIME CG10731 UPSTREAM Ext2 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12037236	2R_12037236_SNP [dm3] 2R_16149731_SNP [dm6]	C	T	2.223e^-6	0.002	UTR_5_PRIME CG10731 UPSTREAM lbk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12037343	2R_12037343_SNP [dm3] 2R_16149838_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12037385	2R_12037385_SNP [dm3] 2R_16149880_SNP [dm6]	G	T	2.223e^-6	0.002	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2R	12037507	2R_12037507_SNP [dm3] 2R_16150002_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12037559	2R_12037559_SNP [dm3] 2R_16150054_SNP [dm6]	T	C	2.223e^-6	0.002	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12037867	2R_12037867_INS [dm3] 2R_16150362_INS [dm6]	A	AA	2.223e^-6	0.002	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	12038026	2R_12038026_SNP [dm3] 2R_16150521_SNP [dm6]	A	G	2.223e^-6	0.002	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12038186	2R_12038186_SNP [dm3] 2R_16150681_SNP [dm6]	T	A	2.223e^-6	0.002	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12040561	2R_12040561_SNP [dm3] 2R_16153056_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON lbk
2R	12040730	2R_12040730_SNP [dm3] 2R_16153225_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON lbk
2R	12058743	2R_12058743_SNP [dm3] 2R_16171238_SNP [dm6]	C	T	2.223e^-6	0.002	UTR_3_PRIME Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12059023	2R_12059023_SNP [dm3] 2R_16171518_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12060960	2R_12060960_SNP [dm3] 2R_16173455_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	12061569	2R_12061569_SNP [dm3] 2R_16174064_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	12061570	2R_12061570_INS [dm3] 2R_16174065_INS [dm6]	A	AA	2.223e^-6	0.002	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	12063382	2R_12063382_SNP [dm3] 2R_16175877_SNP [dm6]	G	C	2.223e^-6	0.002	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	12065524	2R_12065524_SNP [dm3] 2R_16178019_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM Lis-1 INTRON Ptp52F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12138967	2R_12138967_SNP [dm3] 2R_16251462_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CngA
2R	12138972	2R_12138972_SNP [dm3] 2R_16251467_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON CngA
2R	12138973	2R_12138973_SNP [dm3] 2R_16251468_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON CngA
2R	12138978	2R_12138978_SNP [dm3] 2R_16251473_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CngA
2R	12139591	2R_12139591_SNP [dm3] 2R_16252086_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CngA
2R	12149272	2R_12149272_SNP [dm3] 2R_16261767_SNP [dm6]	C	G	2.223e^-6	0.002	DOWNSTREAM fidipidine INTERGENIC
2R	12156028	2R_12156028_SNP [dm3] 2R_16268523_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Khc	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12158108	2R_12158108_SNP [dm3] 2R_16270603_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Khc	TF binding site mE1_TFBS_Trl
2R	12158184	2R_12158184_SNP [dm3] 2R_16270679_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON Khc	TF binding site mE1_TFBS_Trl
2R	12158199	2R_12158199_SNP [dm3] 2R_16270694_SNP [dm6]	A	T	2.223e^-6	0.002	INTRON Khc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12163706	2R_12163706_SNP [dm3] 2R_16276201_SNP [dm6]	A	G	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG33017
2R	12163713	2R_12163713_SNP [dm3] 2R_16276208_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG33017
2R	12167604	2R_12167604_INS [dm3] 2R_16280099_INS [dm6]	A	AT	2.223e^-6	0.002	UTR_5_PRIME CG15704 UPSTREAM CG15705
2R	12167972	2R_12167972_SNP [dm3] 2R_16280467_SNP [dm6]	T	G	2.223e^-6	0.002	UTR_3_PRIME CG15704 UPSTREAM CG15705
2R	12168267	2R_12168267_INS [dm3] 2R_16280762_INS [dm6]	A	ACA	2.223e^-6	0.002	UPSTREAM CG15705 DOWNSTREAM CG15704 & 1 other INTERGENIC
2R	12175448	2R_12175448_SNP [dm3] 2R_16287943_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
2R	12189401	2R_12189401_SNP [dm3] 2R_16301896_SNP [dm6]	C	A	2.223e^-6	0.002	EXON CR45232	TF binding site mE1_TFBS_chinmo
2R	12189810	2R_12189810_SNP [dm3] 2R_16302305_SNP [dm6]	C	T	2.223e^-6	0.002	EXON CR45232	TF binding site BDTNP1_TFBS_dl
2R	12197343	2R_12197343_SNP [dm3] 2R_16309838_SNP [dm6]	G	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING Nox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv
2R	12198784	2R_12198784_SNP [dm3] 2R_16311279_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Nox	TF binding site mE1_TFBS_chinmo
2R	12250523	2R_12250523_SNP [dm3] 2R_16363018_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG6262 DOWNSTREAM CG15711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12250529	2R_12250529_SNP [dm3] 2R_16363024_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG6262 DOWNSTREAM CG15711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12250830	2R_12250830_SNP [dm3] 2R_16363325_SNP [dm6]	G	A	2.223e^-6	0.002	UTR_3_PRIME CG6262 DOWNSTREAM CG15711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12273773	2R_12273773_SNP [dm3] 2R_16386268_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12273842	2R_12273842_SNP [dm3] 2R_16386337_SNP [dm6]	C	G	2.223e^-6	0.002	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12324148	2R_12324148_SNP [dm3] 2R_16436643_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM CG7848 INTERGENIC
2R	12324182	2R_12324182_SNP [dm3] 2R_16436677_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM CG7848 INTERGENIC
2R	12325430	2R_12325430_SNP [dm3] 2R_16437925_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	12334454	2R_12334454_SNP [dm3] 2R_16446949_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG15925
2R	12336262	2R_12336262_SNP [dm3] 2R_16448757_SNP [dm6]	C	A	2.223e^-6	0.002	INTERGENIC
2R	12342715	2R_12342715_SNP [dm3] 2R_16455210_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	12343675	2R_12343675_SNP [dm3] 2R_16456170_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	12345664	2R_12345664_SNP [dm3] 2R_16458159_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	12345679	2R_12345679_DEL [dm3] 2R_16458174_DEL [dm6]	TT	T	2.223e^-6	0.002	INTERGENIC
2R	12346890	2R_12346890_SNP [dm3] 2R_16459385_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	12359705	2R_12359705_SNP [dm3] 2R_16472200_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	12396694	2R_12396694_SNP [dm3] 2R_16509189_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Sema-2a
2R	12396695	2R_12396695_SNP [dm3] 2R_16509190_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Sema-2a
2R	12398537	2R_12398537_SNP [dm3] 2R_16511032_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Sema-2a
2R	12401390	2R_12401390_SNP [dm3] 2R_16513885_SNP [dm6]	G	T	2.223e^-6	0.002	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	12416004	2R_12416004_SNP [dm3] 2R_16528499_SNP [dm6]	A	T	2.223e^-6	0.002	INTRON Sema-2a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12417560	2R_12417560_SNP [dm3] 2R_16530055_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON Sema-2a
2R	12422211	2R_12422211_SNP [dm3] 2R_16534706_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422216	2R_12422216_INS [dm3] 2R_16534711_INS [dm6]	A	AGTTTGGGCAGTTTGTG...	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422219	2R_12422219_INS [dm3] 2R_16534714_INS [dm6]	C	CAGTT	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422233	2R_12422233_SNP [dm3] 2R_16534728_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422235	2R_12422235_SNP [dm3] 2R_16534730_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422240	2R_12422240_DEL [dm3] 2R_16534735_DEL [dm6]	AA	T	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422251	2R_12422251_INS [dm3] 2R_16534746_INS [dm6]	A	AGGAAA	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422254	2R_12422254_SNP [dm3] 2R_16534749_SNP [dm6]	A	C	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422291	2R_12422291_SNP [dm3] 2R_16534786_SNP [dm6]	A	C	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422305	2R_12422305_INS [dm3] 2R_16534800_INS [dm6]	A	AATTCA	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422318	2R_12422318_SNP [dm3] 2R_16534813_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12422337	2R_12422337_SNP [dm3] 2R_16534832_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM loopin-1 INTERGENIC
2R	12442430	2R_12442430_SNP [dm3] 2R_16554925_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON Syn2
2R	12448088	2R_12448088_SNP [dm3] 2R_16560583_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING DAT
2R	12450599	2R_12450599_SNP [dm3] 2R_16563094_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON DAT
2R	12456387	2R_12456387_SNP [dm3] 2R_16568882_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	12457903	2R_12457903_SNP [dm3] 2R_16570398_SNP [dm6]	A	G	2.223e^-6	0.002	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12458376	2R_12458376_SNP [dm3] 2R_16570871_SNP [dm6]	A	G	2.223e^-6	0.002	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12469681	2R_12469681_SNP [dm3] 2R_16582176_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12483529	2R_12483529_SNP [dm3] 2R_16596024_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG8303
2R	12494421	2R_12494421_SNP [dm3] 2R_16606916_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM CG5065 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12494440	2R_12494440_SNP [dm3] 2R_16606935_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM CG5065 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12498090	2R_12498090_SNP [dm3] 2R_16610585_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG5065
2R	12504801	2R_12504801_SNP [dm3] 2R_16617296_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM CG5065 INTRON CG5065
2R	12523747	2R_12523747_SNP [dm3] 2R_16636242_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON CG30463
2R	12581298	2R_12581298_SNP [dm3] 2R_16693793_SNP [dm6]	C	T	2.223e^-6	0.002	DOWNSTREAM CG5210 INTRON CG30463
2R	12581300	2R_12581300_SNP [dm3] 2R_16693795_SNP [dm6]	G	A	2.223e^-6	0.002	DOWNSTREAM CG5210 INTRON CG30463
2R	12601741	2R_12601741_SNP [dm3] 2R_16714236_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG30463
2R	12602298	2R_12602298_SNP [dm3] 2R_16714793_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON CG30463
2R	12602331	2R_12602331_SNP [dm3] 2R_16714826_SNP [dm6]	A	C	2.223e^-6	0.002	INTRON CG30463
2R	12641671	2R_12641671_SNP [dm3] 2R_16754166_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	12647373	2R_12647373_SNP [dm3] 2R_16759868_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING unc-104
2R	12676082	2R_12676082_SNP [dm3] 2R_16788577_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING CG5522
2R	12724037	2R_12724037_SNP [dm3] 2R_16836532_SNP [dm6]	T	C	2.223e^-6	0.002	EXON CR43650
2R	12735557	2R_12735557_SNP [dm3] 2R_16848052_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	12735610	2R_12735610_SNP [dm3] 2R_16848105_SNP [dm6]	A	C	2.223e^-6	0.002	UPSTREAM CR44467 INTERGENIC
2R	12766211	2R_12766211_SNP [dm3] 2R_16878706_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON CG8910
2R	12773464	2R_12773464_SNP [dm3] 2R_16885959_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CG8910
2R	12789963	2R_12789963_SNP [dm3] 2R_16902458_SNP [dm6]	C	A	2.223e^-6	0.002	DOWNSTREAM inaC INTERGENIC
2R	12799397	2R_12799397_SNP [dm3] 2R_16911892_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	12829722	2R_12829722_SNP [dm3] 2R_16942217_SNP [dm6]	A	G	2.223e^-6	0.002	SPLICE_SITE_REGION Pkc53E INTRON Pkc53E
2R	12900437	2R_12900437_DEL [dm3] 2R_17012932_DEL [dm6]	AAA	A	2.223e^-6	0.002	INTRON Ehbp1
2R	12900698	2R_12900698_SNP [dm3] 2R_17013193_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON Ehbp1
2R	12905319	2R_12905319_SNP [dm3] 2R_17017814_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CG8963	TF binding site BDTNP1_TFBS_dl
2R	12937587	2R_12937587_SNP [dm3] 2R_17050082_SNP [dm6]	A	C	2.223e^-6	0.002	SYNONYMOUS_CODING CG9646	TF binding site mE1_TFBS_cad
2R	12948819	2R_12948819_SNP [dm3] 2R_17061314_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG8950	TF binding site mE1_TFBS_chinmo
2R	12962789	2R_12962789_SNP [dm3] 2R_17075284_SNP [dm6]	G	C	2.223e^-6	0.002	INTRON CG30460	TF binding site mE1_TFBS_cad
2R	12967988	2R_12967988_SNP [dm3] 2R_17080483_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON CG30460
2R	12968372	2R_12968372_SNP [dm3] 2R_17080867_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON CG30460
2R	12969307	2R_12969307_SNP [dm3] 2R_17081802_SNP [dm6]	T	C	2.223e^-6	0.002	UTR_5_PRIME CG30460
2R	12969312	2R_12969312_SNP [dm3] 2R_17081807_SNP [dm6]	C	T	2.223e^-6	0.002	UTR_5_PRIME CG30460
2R	12969323	2R_12969323_SNP [dm3] 2R_17081818_SNP [dm6]	T	C	2.223e^-6	0.002	START_GAINED CG30460 UTR_5_PRIME CG30460
2R	12974667	2R_12974667_SNP [dm3] 2R_17087162_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG30460
2R	12987333	2R_12987333_SNP [dm3] 2R_17099828_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM CG30456 & 1 other INTERGENIC
2R	12988448	2R_12988448_SNP [dm3] 2R_17100943_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG30456
2R	12989145	2R_12989145_SNP [dm3] 2R_17101640_SNP [dm6]	G	T	2.223e^-6	0.002	INTRON CG30456	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12990232	2R_12990232_SNP [dm3] 2R_17102727_SNP [dm6]	G	A	2.223e^-6	0.002	UTR_5_PRIME CG30456 UPSTREAM CG30456	TF binding site mE1_TFBS_cad
2R	13004251	2R_13004251_SNP [dm3] 2R_17116746_SNP [dm6]	A	C	2.223e^-6	0.002	INTERGENIC
2R	13004273	2R_13004273_DEL [dm3] 2R_17116768_DEL [dm6]	ATC	A	2.223e^-6	0.002	INTERGENIC
2R	13004307	2R_13004307_SNP [dm3] 2R_17116802_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	13013888	2R_13013888_SNP [dm3] 2R_17126383_SNP [dm6]	G	A	2.223e^-6	0.002	DOWNSTREAM CG15605 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13014417	2R_13014417_SNP [dm3] 2R_17126912_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING CG15605 DOWNSTREAM Amy-d
2R	13019021	2R_13019021_SNP [dm3] 2R_17131516_SNP [dm6]	T	A	2.223e^-6	0.002	EXON CR45273
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	2.223e^-6	0.002	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2R	13057658	2R_13057658_SNP [dm3] 2R_17170153_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13057664	2R_13057664_SNP [dm3] 2R_17170159_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13072967	2R_13072967_SNP [dm3] 2R_17185462_SNP [dm6]	C	A	2.223e^-6	0.002	EXON CR44387
2R	13073029	2R_13073029_SNP [dm3] 2R_17185524_SNP [dm6]	C	T	2.223e^-6	0.002	EXON CR44387
2R	13073040	2R_13073040_SNP [dm3] 2R_17185535_SNP [dm6]	T	A	2.223e^-6	0.002	EXON CR44387
2R	13081963	2R_13081963_SNP [dm3] 2R_17194458_SNP [dm6]	T	G	2.223e^-6	0.002	UPSTREAM CG10950 INTERGENIC
2R	13081965	2R_13081965_SNP [dm3] 2R_17194460_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM CG10950 INTERGENIC
2R	13094921	2R_13094921_SNP [dm3] 2R_17207416_SNP [dm6]	G	C	2.223e^-6	0.002	INTERGENIC
2R	13094942	2R_13094942_SNP [dm3] 2R_17207437_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	13106278	2R_13106278_SNP [dm3] 2R_17218773_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON mbl
2R	13106313	2R_13106313_SNP [dm3] 2R_17218808_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON mbl
2R	13194633	2R_13194633_SNP [dm3] 2R_17307128_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON mbl & 1 other
2R	13194657	2R_13194657_SNP [dm3] 2R_17307152_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON mbl EXON CR43661
2R	13221603	2R_13221603_SNP [dm3] 2R_17334098_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON mbl
2R	13221645	2R_13221645_SNP [dm3] 2R_17334140_SNP [dm6]	A	C	2.223e^-6	0.002	INTRON mbl
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON mbl
2R	13221670	2R_13221670_SNP [dm3] 2R_17334165_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON mbl
2R	13228336	2R_13228336_SNP [dm3] 2R_17340831_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON mbl
2R	13242047	2R_13242047_SNP [dm3] 2R_17354542_SNP [dm6]	C	T	2.223e^-6	0.002	DOWNSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13258120	2R_13258120_SNP [dm3] 2R_17370615_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON mbl
2R	13319246	2R_13319246_SNP [dm3] 2R_17431741_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING Lhr UPSTREAM Bap55 DOWNSTREAM EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13365219	2R_13365219_SNP [dm3] 2R_17477714_SNP [dm6]	G	A	2.223e^-6	0.002	UTR_3_PRIME CG43110 UPSTREAM veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13372735	2R_13372735_SNP [dm3] 2R_17485230_SNP [dm6]	T	C	2.223e^-6	0.002	START_GAINED CG43110 UTR_5_PRIME CG43110 INTRON NT5E-2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13443263	2R_13443263_SNP [dm3] 2R_17555758_SNP [dm6]	C	T	2.223e^-6	0.002	UTR_3_PRIME MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	13449510	2R_13449510_SNP [dm3] 2R_17562005_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING Klp54D	TF binding site mE1_TFBS_HSA
2R	13467311	2R_13467311_SNP [dm3] 2R_17579806_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING Dcr-2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	13520390	2R_13520390_SNP [dm3] 2R_17632885_SNP [dm6]	C	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13520418	2R_13520418_SNP [dm3] 2R_17632913_SNP [dm6]	T	A	2.223e^-6	0.002	NON_SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13521547	2R_13521547_SNP [dm3] 2R_17634042_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING Oxp UPSTREAM rhi INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13521669	2R_13521669_SNP [dm3] 2R_17634164_SNP [dm6]	C	T	2.223e^-6	0.002	UTR_5_PRIME Oxp UPSTREAM rhi INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13521744	2R_13521744_SNP [dm3] 2R_17634239_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM rhi & 1 other INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13525441	2R_13525441_SNP [dm3] 2R_17637936_SNP [dm6]	T	G	2.223e^-6	0.002	INTRON CG10936
2R	13525442	2R_13525442_SNP [dm3] 2R_17637937_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON CG10936
2R	13528532	2R_13528532_SNP [dm3] 2R_17641027_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	13528680	2R_13528680_SNP [dm3] 2R_17641175_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	13532288	2R_13532288_SNP [dm3] 2R_17644783_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	13535602	2R_13535602_SNP [dm3] 2R_17648097_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA
2R	13538611	2R_13538611_SNP [dm3] 2R_17651106_SNP [dm6]	G	A	2.223e^-6	0.002	SPLICE_SITE_REGION CCHa1-R INTRON CCHa1-R	TF binding site mE1_TFBS_inv
2R	13548706	2R_13548706_SNP [dm3] 2R_17661201_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON CCHa1-R
2R	13548708	2R_13548708_DEL [dm3] 2R_17661203_DEL [dm6]	TT	T	2.223e^-6	0.002	INTRON CCHa1-R
2R	13548712	2R_13548712_SNP [dm3] 2R_17661207_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CCHa1-R
2R	13548731	2R_13548731_SNP [dm3] 2R_17661226_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CCHa1-R
2R	13548742	2R_13548742_SNP [dm3] 2R_17661237_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CCHa1-R
2R	13548884	2R_13548884_SNP [dm3] 2R_17661379_SNP [dm6]	G	C	2.223e^-6	0.002	INTRON CCHa1-R
2R	13549387	2R_13549387_SNP [dm3] 2R_17661882_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON CCHa1-R
2R	13549424	2R_13549424_DEL [dm3] 2R_17661919_DEL [dm6]	ACAATA	A	2.223e^-6	0.002	INTRON CCHa1-R
2R	13549434	2R_13549434_SNP [dm3] 2R_17661929_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON CCHa1-R
2R	13554673	2R_13554673_SNP [dm3] 2R_17667168_SNP [dm6]	C	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13563410	2R_13563410_SNP [dm3] 2R_17675905_SNP [dm6]	A	G	2.223e^-6	0.002	SPLICE_SITE_REGION Sema-1b INTRON Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13568456	2R_13568456_SNP [dm3] 2R_17680951_SNP [dm6]	A	C	2.223e^-6	0.002	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13572272	2R_13572272_SNP [dm3] 2R_17684767_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM CG42561 INTRON HPS4	TF binding site BDTNP1_TFBS_hb mE1_TFBS_hkb
2R	13573147	2R_13573147_SNP [dm3] 2R_17685642_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM CG42562 DOWNSTREAM CG42561 INTRON HPS4
2R	13573566	2R_13573566_SNP [dm3] 2R_17686061_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4 & 1 other
2R	13573567	2R_13573567_SNP [dm3] 2R_17686062_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4 & 1 other
2R	13589068	2R_13589068_SNP [dm3] 2R_17701563_SNP [dm6]	T	G	2.223e^-6	0.002	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others INTRON Uhg1
2R	13593193	2R_13593193_SNP [dm3] 2R_17705688_SNP [dm6]	T	G	2.223e^-6	0.002	INTRON CG6424
2R	13629077	2R_13629077_SNP [dm3] 2R_17741572_SNP [dm6]	T	C	2.223e^-6	0.002	SYNONYMOUS_CODING CG4996	TF binding site mE1_TFBS_sens
2R	13629116	2R_13629116_SNP [dm3] 2R_17741611_SNP [dm6]	G	C	2.223e^-6	0.002	SYNONYMOUS_CODING CG4996	TF binding site mE1_TFBS_sens
2R	13629168	2R_13629168_SNP [dm3] 2R_17741663_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CG4996
2R	13629187	2R_13629187_SNP [dm3] 2R_17741682_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG4996
2R	13629249	2R_13629249_SNP [dm3] 2R_17741744_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING CG4996
2R	13642442	2R_13642442_SNP [dm3] 2R_17754937_SNP [dm6]	G	T	2.223e^-6	0.002	NON_SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13642786	2R_13642786_SNP [dm3] 2R_17755281_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13664846	2R_13664846_SNP [dm3] 2R_17777341_SNP [dm6]	G	A	2.223e^-6	0.002	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
2R	13673457	2R_13673457_SNP [dm3] 2R_17785952_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM aft INTERGENIC
2R	13673949	2R_13673949_SNP [dm3] 2R_17786444_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING aft
2R	13676774	2R_13676774_SNP [dm3] 2R_17789269_SNP [dm6]	A	G	2.223e^-6	0.002	UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13676835	2R_13676835_SNP [dm3] 2R_17789330_SNP [dm6]	G	A	2.223e^-6	0.002	UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13676889	2R_13676889_INS [dm3] 2R_17789384_INS [dm6]	A	AA	2.223e^-6	0.002	UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13681713	2R_13681713_SNP [dm3] 2R_17794208_SNP [dm6]	C	A	2.223e^-6	0.002	UTR_5_PRIME Dhit	TF binding site mE1_TFBS_Trl
2R	13687460	2R_13687460_SNP [dm3] 2R_17799955_SNP [dm6]	A	T	2.223e^-6	0.002	UTR_3_PRIME Dhit DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13710470	2R_13710470_SNP [dm3] 2R_17822965_SNP [dm6]	T	G	2.223e^-6	0.002	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi transposable element FlyBase
2R	13710683	2R_13710683_SNP [dm3] 2R_17823178_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	13715638	2R_13715638_SNP [dm3] 2R_17828133_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON grh
2R	13724742	2R_13724742_SNP [dm3] 2R_17837237_SNP [dm6]	G	C	2.223e^-6	0.002	INTRON grh
2R	13734263	2R_13734263_DEL [dm3] 2R_17846758_DEL [dm6]	GG	G	2.223e^-6	0.002	UTR_5_PRIME olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	13737066	2R_13737066_SNP [dm3] 2R_17849561_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737071	2R_13737071_SNP [dm3] 2R_17849566_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737080	2R_13737080_SNP [dm3] 2R_17849575_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737085	2R_13737085_SNP [dm3] 2R_17849580_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737089	2R_13737089_INS [dm3] 2R_17849584_INS [dm6]	T	TTGAAAT	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737096	2R_13737096_SNP [dm3] 2R_17849591_SNP [dm6]	C	A	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737126	2R_13737126_SNP [dm3] 2R_17849621_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737141	2R_13737141_SNP [dm3] 2R_17849636_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737149	2R_13737149_SNP [dm3] 2R_17849644_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737192	2R_13737192_SNP [dm3] 2R_17849687_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737282	2R_13737282_INS [dm3] 2R_17849777_INS [dm6]	A	ATGTA	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737286	2R_13737286_SNP [dm3] 2R_17849781_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737287	2R_13737287_SNP [dm3] 2R_17849782_SNP [dm6]	A	C	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737333	2R_13737333_SNP [dm3] 2R_17849828_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737471	2R_13737471_SNP [dm3] 2R_17849966_SNP [dm6]	A	C	2.223e^-6	0.002	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737489	2R_13737489_SNP [dm3] 2R_17849984_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737493	2R_13737493_SNP [dm3] 2R_17849988_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13737496	2R_13737496_SNP [dm3] 2R_17849991_SNP [dm6]	C	A	2.223e^-6	0.002	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13740659	2R_13740659_SNP [dm3] 2R_17853154_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13740698	2R_13740698_SNP [dm3] 2R_17853193_SNP [dm6]	G	T	2.223e^-6	0.002	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13740701	2R_13740701_SNP [dm3] 2R_17853196_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13751616	2R_13751616_SNP [dm3] 2R_17864111_SNP [dm6]	C	G	2.223e^-6	0.002	NON_SYNONYMOUS_CODING thr
2R	13770685	2R_13770685_SNP [dm3] 2R_17883180_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM CG30110 INTRON Elk
2R	13777373	2R_13777373_SNP [dm3] 2R_17889868_SNP [dm6]	A	C	2.223e^-6	0.002	SYNONYMOUS_CODING PPO1 INTRON Elk
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	2.223e^-6	0.002	UTR_5_PRIME PPO1 INTRON Elk
2R	13778018	2R_13778018_SNP [dm3] 2R_17890513_SNP [dm6]	C	G	2.223e^-6	0.002	UPSTREAM PPO1 INTRON Elk
2R	13784139	2R_13784139_INS [dm3] 2R_17896634_INS [dm6]	G	TAA	2.223e^-6	0.002	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13788851	2R_13788851_SNP [dm3] 2R_17901346_SNP [dm6]	A	T	2.223e^-6	0.002	INTRON Elk
2R	13796005	2R_13796005_SNP [dm3] 2R_17908500_SNP [dm6]	C	T	2.223e^-6	0.002	SYNONYMOUS_CODING Elk
2R	13798944	2R_13798944_SNP [dm3] 2R_17911439_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON Elk
2R	13800451	2R_13800451_SNP [dm3] 2R_17912946_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Elk
2R	13800864	2R_13800864_SNP [dm3] 2R_17913359_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON Elk
2R	13800885	2R_13800885_SNP [dm3] 2R_17913380_SNP [dm6]	C	G	2.223e^-6	0.002	INTRON Elk
2R	13803597	2R_13803597_SNP [dm3] 2R_17916092_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON Elk
2R	13816239	2R_13816239_SNP [dm3] 2R_17928734_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	13817942	2R_13817942_SNP [dm3] 2R_17930437_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	13818122	2R_13818122_SNP [dm3] 2R_17930617_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC
2R	13818192	2R_13818192_SNP [dm3] 2R_17930687_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	13822520	2R_13822520_SNP [dm3] 2R_17935015_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	13822544	2R_13822544_SNP [dm3] 2R_17935039_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	13822699	2R_13822699_SNP [dm3] 2R_17935194_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	13832560	2R_13832560_SNP [dm3] 2R_17945055_SNP [dm6]	C	A	2.223e^-6	0.002	INTERGENIC
2R	13840439	2R_13840439_SNP [dm3] 2R_17952934_SNP [dm6]	C	A	2.223e^-6	0.002	INTERGENIC
2R	13847020	2R_13847020_SNP [dm3] 2R_17959515_SNP [dm6]	C	G	2.223e^-6	0.002	INTERGENIC
2R	13859107	2R_13859107_SNP [dm3] 2R_17971602_SNP [dm6]	T	G	2.223e^-6	0.002	INTERGENIC
2R	13859921	2R_13859921_SNP [dm3] 2R_17972416_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	13861292	2R_13861292_SNP [dm3] 2R_17973787_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	2.223e^-6	0.002	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	2.223e^-6	0.002	INTRON dpr13
2R	13867810	2R_13867810_SNP [dm3] 2R_17980305_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON dpr13
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON dpr13
2R	13872437	2R_13872437_SNP [dm3] 2R_17984932_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON dpr13
2R	13874371	2R_13874371_SNP [dm3] 2R_17986866_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON dpr13
2R	13875343	2R_13875343_SNP [dm3] 2R_17987838_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON dpr13
2R	13878748	2R_13878748_SNP [dm3] 2R_17991243_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON dpr13
2R	13881626	2R_13881626_SNP [dm3] 2R_17994121_SNP [dm6]	A	T	2.223e^-6	0.002	INTRON dpr13
2R	13894310	2R_13894310_SNP [dm3] 2R_18006805_SNP [dm6]	T	G	2.223e^-6	0.002	DOWNSTREAM CR44419 INTRON dpr13
2R	13896962	2R_13896962_SNP [dm3] 2R_18009457_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC
2R	13898117	2R_13898117_SNP [dm3] 2R_18010612_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13904002	2R_13904002_SNP [dm3] 2R_18016497_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	13905177	2R_13905177_SNP [dm3] 2R_18017672_SNP [dm6]	T	C	2.223e^-6	0.002	UPSTREAM CG5084 INTERGENIC
2R	13942953	2R_13942953_SNP [dm3] 2R_18055448_SNP [dm6]	T	A	2.223e^-6	0.002	DOWNSTREAM CG10912 & 1 other INTERGENIC
2R	13945517	2R_13945517_SNP [dm3] 2R_18058012_SNP [dm6]	T	C	2.223e^-6	0.002	UPSTREAM CG10912 EXON CR45314
2R	13946159	2R_13946159_SNP [dm3] 2R_18058654_SNP [dm6]	A	T	2.223e^-6	0.002	EXON CR45314
2R	13947827	2R_13947827_SNP [dm3] 2R_18060322_SNP [dm6]	A	G	2.223e^-6	0.002	INTERGENIC
2R	13947926	2R_13947926_SNP [dm3] 2R_18060421_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	13950631	2R_13950631_SNP [dm3] 2R_18063126_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG34386
2R	13959560	2R_13959560_SNP [dm3] 2R_18072055_SNP [dm6]	G	T	2.223e^-6	0.002	INTRON CG34386
2R	13959561	2R_13959561_SNP [dm3] 2R_18072056_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG34386
2R	13979780	2R_13979780_SNP [dm3] 2R_18092275_SNP [dm6]	C	T	2.223e^-6	0.002	INTRON CG34386
2R	14029867	2R_14029867_SNP [dm3] 2R_18142362_SNP [dm6]	T	C	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14029900	2R_14029900_SNP [dm3] 2R_18142395_SNP [dm6]	T	A	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14030013	2R_14030013_SNP [dm3] 2R_18142508_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2R	14030014	2R_14030014_SNP [dm3] 2R_18142509_SNP [dm6]	A	C	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2R	14030251	2R_14030251_SNP [dm3] 2R_18142746_SNP [dm6]	C	A	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14030256	2R_14030256_SNP [dm3] 2R_18142751_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14030363	2R_14030363_SNP [dm3] 2R_18142858_SNP [dm6]	C	T	2.223e^-6	0.002	UPSTREAM snoRNA:Psi18S-1347b & 1 other INTRON pAbp EXON snoRNA:Psi18S-1347a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14030789	2R_14030789_SNP [dm3] 2R_18143284_SNP [dm6]	C	A	2.223e^-6	0.002	DOWNSTREAM snoRNA:Psi18S-1347a & 1 other INTRON pAbp EXON snoRNA:Psi18S-1347c	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14039764	2R_14039764_SNP [dm3] 2R_18152259_SNP [dm6]	C	G	2.223e^-6	0.002	SYNONYMOUS_CODING adp UPSTREAM CG5742	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	2.223e^-6	0.002	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14073211	2R_14073211_SNP [dm3] 2R_18185706_SNP [dm6]	A	G	2.223e^-6	0.002	SYNONYMOUS_CODING CG33958
2R	14078575	2R_14078575_SNP [dm3] 2R_18191070_SNP [dm6]	G	A	2.223e^-6	0.002	INTRON CG33958
2R	14079325	2R_14079325_SNP [dm3] 2R_18191820_SNP [dm6]	T	C	2.223e^-6	0.002	INTRON CG33958
2R	14079339	2R_14079339_SNP [dm3] 2R_18191834_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG33958
2R	14079340	2R_14079340_SNP [dm3] 2R_18191835_SNP [dm6]	A	G	2.223e^-6	0.002	INTRON CG33958
2R	14079352	2R_14079352_SNP [dm3] 2R_18191847_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CG33958
2R	14079364	2R_14079364_SNP [dm3] 2R_18191859_SNP [dm6]	T	A	2.223e^-6	0.002	INTRON CG33958
2R	14091384	2R_14091384_SNP [dm3] 2R_18203879_SNP [dm6]	G	C	2.223e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14093808	2R_14093808_SNP [dm3] 2R_18206303_SNP [dm6]	T	C	2.223e^-6	0.002	INTERGENIC
2R	14113691	2R_14113691_SNP [dm3] 2R_18226186_SNP [dm6]	G	T	2.223e^-6	0.002	UPSTREAM CR45310 INTERGENIC
2R	14113702	2R_14113702_SNP [dm3] 2R_18226197_SNP [dm6]	G	A	2.223e^-6	0.002	UPSTREAM CR45310 INTERGENIC
2R	14118151	2R_14118151_SNP [dm3] 2R_18230646_SNP [dm6]	A	T	2.223e^-6	0.002	EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
2R	14144017	2R_14144017_SNP [dm3] 2R_18256512_SNP [dm6]	A	T	2.223e^-6	0.002	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14144023	2R_14144023_SNP [dm3] 2R_18256518_SNP [dm6]	A	G	2.223e^-6	0.002	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14152440	2R_14152440_SNP [dm3] 2R_18264935_SNP [dm6]	G	T	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14152482	2R_14152482_SNP [dm3] 2R_18264977_SNP [dm6]	C	T	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14152581	2R_14152581_SNP [dm3] 2R_18265076_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14152586	2R_14152586_SNP [dm3] 2R_18265081_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14152660	2R_14152660_SNP [dm3] 2R_18265155_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC
2R	14152668	2R_14152668_SNP [dm3] 2R_18265163_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	14152672	2R_14152672_SNP [dm3] 2R_18265167_SNP [dm6]	G	T	2.223e^-6	0.002	INTERGENIC
2R	14152674	2R_14152674_SNP [dm3] 2R_18265169_SNP [dm6]	A	T	2.223e^-6	0.002	INTERGENIC
2R	14152678	2R_14152678_SNP [dm3] 2R_18265173_SNP [dm6]	T	A	2.223e^-6	0.002	INTERGENIC
2R	14152686	2R_14152686_INS [dm3] 2R_18265181_INS [dm6]	A	AA	2.223e^-6	0.002	INTERGENIC
2R	14152708	2R_14152708_DEL [dm3] 2R_18265203_DEL [dm6]	TTTT	CAC	2.223e^-6	0.002	INTERGENIC
2R	14152931	2R_14152931_SNP [dm3] 2R_18265426_SNP [dm6]	G	A	2.223e^-6	0.002	INTERGENIC

By genomic position
Variant impact
Gene name

pc_MB_Beta_Abnormal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results