DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.481e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6905	0.0958
In_3R_Mo	5.0204	0.0813

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3035 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16516810	3R_16516810_SNP [dm3] 3R_20691088_SNP [dm6]	A	C	1.292e^-10	2.384e^-4	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14486560	3R_14486560_SNP [dm3] 3R_18660838_SNP [dm6]	C	T	9.137e^-8	0.067	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	10631641	2L_10631641_SNP [dm3] 2L_10631641_SNP [dm6]	G	A	1.446e^-7	0.067	UPSTREAM CG7329 INTRON CG7329
2R	18292971	2R_18292971_SNP [dm3] 2R_22405466_SNP [dm6]	T	G	1.450e^-7	0.067	INTRON CG6044
3R	16020451	3R_16020451_DEL [dm3] 3R_20194729_DEL [dm6]	AA	C	3.171e^-7	0.117	INTERGENIC
2R	18292924	2R_18292924_SNP [dm3] 2R_22405419_SNP [dm6]	A	G	4.955e^-7	0.117	INTRON CG6044
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	6.005e^-7	0.117	INTRON bru-3
2L	20121375	2L_20121375_SNP [dm3] 2L_20121375_SNP [dm6]	G	C	6.430e^-7	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	16017336	3R_16017336_DEL [dm3] 3R_20191614_DEL [dm6]	TTA	T	6.769e^-7	0.117	INTERGENIC
3R	23685303	3R_23685303_SNP [dm3] 3R_27859581_SNP [dm6]	T	A	8.012e^-7	0.117	INTRON CG34353
3R	19906908	3R_19906908_SNP [dm3] 3R_24081186_SNP [dm6]	A	G	8.464e^-7	0.117	INTRON 4EHP
X	16881674	X_16881674_SNP [dm3] X_16987641_SNP [dm6]	T	A	8.529e^-7	0.117	UPSTREAM CG45002 INTRON CG45002
3R	23684476	3R_23684476_SNP [dm3] 3R_27858754_SNP [dm6]	C	A	1.027e^-6	0.117	INTRON CG34353
3R	23684661	3R_23684661_SNP [dm3] 3R_27858939_SNP [dm6]	G	C	1.027e^-6	0.117	INTRON CG34353
3R	16642119	3R_16642119_SNP [dm3] 3R_20816397_SNP [dm6]	C	T	1.080e^-6	0.117	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
3R	16642159	3R_16642159_SNP [dm3] 3R_20816437_SNP [dm6]	C	T	1.080e^-6	0.117	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
3R	16642166	3R_16642166_SNP [dm3] 3R_20816444_SNP [dm6]	C	T	1.080e^-6	0.117	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
2L	20098873	2L_20098873_SNP [dm3] 2L_20098873_SNP [dm6]	A	T	1.146e^-6	0.117	INTRON Kua	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16642160	3R_16642160_SNP [dm3] 3R_20816438_SNP [dm6]	C	T	1.535e^-6	0.142	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
3R	23681568	3R_23681568_SNP [dm3] 3R_27855846_SNP [dm6]	C	A	1.612e^-6	0.142	INTRON CG34353
3R	23685460	3R_23685460_SNP [dm3] 3R_27859738_SNP [dm6]	G	T	1.616e^-6	0.142	INTRON CG34353
X	5440279	X_5440279_SNP [dm3] X_5546246_SNP [dm6]	C	T	1.985e^-6	0.153	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	16017410	3R_16017410_SNP [dm3] 3R_20191688_SNP [dm6]	G	A	2.038e^-6	0.153	INTERGENIC
3R	23685739	3R_23685739_SNP [dm3] 3R_27860017_SNP [dm6]	C	T	2.253e^-6	0.153	INTRON CG34353
3R	23686464	3R_23686464_SNP [dm3] 3R_27860742_SNP [dm6]	C	T	2.253e^-6	0.153	INTRON CG34353
3R	23686627	3R_23686627_SNP [dm3] 3R_27860905_SNP [dm6]	A	G	2.253e^-6	0.153	INTRON CG34353
3L	564841	3L_564841_DEL [dm3] 3L_564841_DEL [dm6]	TCCT	T	2.429e^-6	0.153	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23688461	3R_23688461_SNP [dm3] 3R_27862739_SNP [dm6]	A	C	2.477e^-6	0.153	INTRON CG34353
3R	23685688	3R_23685688_DEL [dm3] 3R_27859966_DEL [dm6]	TTT	T	2.552e^-6	0.153	INTRON CG34353
X	7717072	X_7717072_SNP [dm3] X_7823039_SNP [dm6]	T	G	2.567e^-6	0.153	INTERGENIC
3R	24109942	3R_24109942_SNP [dm3] 3R_28284220_SNP [dm6]	C	T	2.574e^-6	0.153	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	16017524	3R_16017524_SNP [dm3] 3R_20191802_SNP [dm6]	C	T	3.202e^-6	0.176	INTERGENIC
3R	23684214	3R_23684214_SNP [dm3] 3R_27858492_SNP [dm6]	G	A	3.316e^-6	0.176	INTRON CG34353
3R	23969846	3R_23969846_SNP [dm3] 3R_28144124_SNP [dm6]	A	C	3.426e^-6	0.176	INTERGENIC
3R	25029970	3R_25029970_SNP [dm3] 3R_29204248_SNP [dm6]	A	G	3.583e^-6	0.176	UPSTREAM CG14508 INTERGENIC
3R	24888686	3R_24888686_SNP [dm3] 3R_29062964_SNP [dm6]	G	A	3.632e^-6	0.176	UTR_5_PRIME Cul5 UPSTREAM CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	24888705	3R_24888705_SNP [dm3] 3R_29062983_SNP [dm6]	T	C	3.632e^-6	0.176	UPSTREAM CG11873 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3R	24889111	3R_24889111_SNP [dm3] 3R_29063389_SNP [dm6]	A	T	3.632e^-6	0.176	UPSTREAM CG11873 & 1 other INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1326284	3L_1326284_SNP [dm3] 3L_1326284_SNP [dm6]	A	G	4.028e^-6	0.182	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23969845	3R_23969845_SNP [dm3] 3R_28144123_SNP [dm6]	A	T	4.184e^-6	0.182	INTERGENIC
3R	26170393	3R_26170393_SNP [dm3] 3R_30344671_SNP [dm6]	A	C	4.448e^-6	0.182	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11493089	3R_11493089_SNP [dm3] 3R_15667367_SNP [dm6]	T	C	4.547e^-6	0.182	UPSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24900397	3R_24900397_SNP [dm3] 3R_29074675_SNP [dm6]	G	A	4.986e^-6	0.182	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23919197	3R_23919197_SNP [dm3] 3R_28093475_SNP [dm6]	A	G	5.037e^-6	0.182	INTERGENIC
X	5900006	X_5900006_SNP [dm3] X_6005973_SNP [dm6]	C	T	5.050e^-6	0.182	DOWNSTREAM CR44498 INTERGENIC
3R	22633766	3R_22633766_SNP [dm3] 3R_26808044_SNP [dm6]	G	A	5.101e^-6	0.182	INTRON Tl
3R	23687976	3R_23687976_SNP [dm3] 3R_27862254_SNP [dm6]	C	G	5.334e^-6	0.182	INTRON CG34353
3R	14118819	3R_14118819_SNP [dm3] 3R_18293097_SNP [dm6]	A	G	5.362e^-6	0.182	UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi
3L	15616897	3L_15616897_SNP [dm3] 3L_15623797_SNP [dm6]	G	A	5.425e^-6	0.182	UTR_3_PRIME CG7372 INTRON comm3
3R	20309921	3R_20309921_SNP [dm3] 3R_24484199_SNP [dm6]	G	A	5.480e^-6	0.182	INTERGENIC
3R	19906839	3R_19906839_SNP [dm3] 3R_24081117_SNP [dm6]	C	G	5.486e^-6	0.182	INTRON 4EHP
X	7931558	X_7931558_SNP [dm3] X_8037525_SNP [dm6]	T	G	5.487e^-6	0.182	UPSTREAM CG2233 DOWNSTREAM fs_1_h INTERGENIC
2L	3954087	2L_3954087_DEL [dm3] 2L_3954087_DEL [dm6]	AGTCTTAAAATCA...	A	5.544e^-6	0.182	INTRON fred
3R	12199421	3R_12199421_SNP [dm3] 3R_16373699_SNP [dm6]	T	A	5.569e^-6	0.182	UPSTREAM CR45193 DOWNSTREAM ss INTERGENIC	TF binding site mE1_TFBS_sens
2L	15523538	2L_15523538_SNP [dm3] 2L_15523538_SNP [dm6]	C	T	5.626e^-6	0.182	EXON CR43761
3R	22289463	3R_22289463_SNP [dm3] 3R_26463741_SNP [dm6]	T	C	5.626e^-6	0.182	INTRON CG5455
2L	3954117	2L_3954117_SNP [dm3] 2L_3954117_SNP [dm6]	C	T	5.651e^-6	0.182	INTRON fred
3R	23681424	3R_23681424_INS [dm3] 3R_27855702_INS [dm6]	T	TT	5.709e^-6	0.182	INTRON CG34353
2L	19949447	2L_19949447_SNP [dm3] 2L_19949447_SNP [dm6]	A	G	6.096e^-6	0.191	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19223386	3R_19223386_SNP [dm3] 3R_23397664_SNP [dm6]	T	G	6.412e^-6	0.194	INTERGENIC
3L	565424	3L_565424_SNP [dm3] 3L_565424_SNP [dm6]	G	A	6.545e^-6	0.194	INTRON hipk
3R	26669699	3R_26669699_SNP [dm3] 3R_30843977_SNP [dm6]	C	T	6.618e^-6	0.194	INTERGENIC
3L	510646	3L_510646_SNP [dm3] 3L_510646_SNP [dm6]	G	T	6.826e^-6	0.194	INTRON klar
3L	510684	3L_510684_SNP [dm3] 3L_510684_SNP [dm6]	G	T	6.826e^-6	0.194	INTRON klar
3R	6281600	3R_6281600_SNP [dm3] 3R_10455878_SNP [dm6]	G	A	6.833e^-6	0.194	INTERGENIC
3L	15286989	3L_15286989_SNP [dm3] 3L_15293889_SNP [dm6]	A	G	7.409e^-6	0.205	INTERGENIC
3L	8974527	3L_8974527_SNP [dm3] 3L_8981427_SNP [dm6]	G	T	7.452e^-6	0.205	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
X	5899924	X_5899924_SNP [dm3] X_6005891_SNP [dm6]	C	A	7.658e^-6	0.205	DOWNSTREAM CR44498 INTERGENIC
3R	14391963	3R_14391963_SNP [dm3] 3R_18566241_SNP [dm6]	T	A	7.670e^-6	0.205	INTERGENIC
3L	6321710	3L_6321710_SNP [dm3] 3L_6328610_SNP [dm6]	T	A	8.187e^-6	0.21	SYNONYMOUS_CODING Or65c DOWNSTREAM CG13300
3L	18483926	3L_18483926_SNP [dm3] 3L_18490826_SNP [dm6]	A	C	8.332e^-6	0.21	INTRON AstC-R2
X	395147	X_395147_SNP [dm3] X_501114_SNP [dm6]	T	G	8.359e^-6	0.21	INTRON svr
3R	11493077	3R_11493077_SNP [dm3] 3R_15667355_SNP [dm6]	T	C	8.370e^-6	0.21	UPSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	3954103	2L_3954103_SNP [dm3] 2L_3954103_SNP [dm6]	C	A	8.573e^-6	0.21	INTRON fred
3R	22269922	3R_22269922_SNP [dm3] 3R_26444200_SNP [dm6]	A	G	8.616e^-6	0.21	INTRON tx
3L	8772489	3L_8772489_SNP [dm3] 3L_8779389_SNP [dm6]	C	T	8.631e^-6	0.21	INTRON Fhos	TF binding site mE1_TFBS_cad
2L	1105262	2L_1105262_SNP [dm3] 2L_1105262_SNP [dm6]	T	A	9.017e^-6	0.216	NON_SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23886152	3R_23886152_SNP [dm3] 3R_28060430_SNP [dm6]	C	G	9.424e^-6	0.22	INTRON CG34362
2R	10149931	2R_10149931_SNP [dm3] 2R_14262426_SNP [dm6]	T	C	9.435e^-6	0.22	INTRON CG8547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9542639	3R_9542639_SNP [dm3] 3R_13716917_SNP [dm6]	C	G	9.786e^-6	0.22	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	14861417	2L_14861417_SNP [dm3] 2L_14861417_SNP [dm6]	G	T	1.007e^-5	0.22	INTERGENIC
3L	13816903	3L_13816903_SNP [dm3] 3L_13823803_SNP [dm6]	T	A	1.007e^-5	0.22	INTERGENIC
3R	17907829	3R_17907829_SNP [dm3] 3R_22082107_SNP [dm6]	A	T	1.021e^-5	0.22	INTRON CG13408
3R	15216297	3R_15216297_DEL [dm3] 3R_19390575_DEL [dm6]	CATT	C	1.025e^-5	0.22	DOWNSTREAM CG3734 INTRON Ino80 & 1 other
2L	5582346	2L_5582346_SNP [dm3] 2L_5582346_SNP [dm6]	T	A	1.031e^-5	0.22	INTERGENIC
2L	5582370	2L_5582370_SNP [dm3] 2L_5582370_SNP [dm6]	C	T	1.031e^-5	0.22	INTERGENIC
2L	3974305	2L_3974305_SNP [dm3] 2L_3974305_SNP [dm6]	A	C	1.039e^-5	0.22	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23277000	3R_23277000_SNP [dm3] 3R_27451278_SNP [dm6]	C	A	1.122e^-5	0.235	INTERGENIC
3R	16017625	3R_16017625_SNP [dm3] 3R_20191903_SNP [dm6]	A	G	1.162e^-5	0.241	INTERGENIC
3R	6281497	3R_6281497_SNP [dm3] 3R_10455775_SNP [dm6]	G	A	1.241e^-5	0.254	INTERGENIC
3R	11191092	3R_11191092_SNP [dm3] 3R_15365370_SNP [dm6]	G	A	1.328e^-5	0.262	INTRON CG34404	TF binding site mE1_TFBS_chinmo
2R	19393610	2R_19393610_SNP [dm3] 2R_23506087_SNP [dm6]	G	A	1.339e^-5	0.262	DOWNSTREAM CR43794 INTERGENIC
3R	23687957	3R_23687957_DEL [dm3] 3R_27862235_DEL [dm6]	AAA	A	1.347e^-5	0.262	INTRON CG34353
2L	20100105	2L_20100105_SNP [dm3] 2L_20100105_SNP [dm6]	A	T	1.356e^-5	0.262	INTRON Kua
2L	13901794	2L_13901794_SNP [dm3] 2L_13901794_SNP [dm6]	C	A	1.361e^-5	0.262	SYNONYMOUS_CODING Smg5
3R	22269947	3R_22269947_DEL [dm3] 3R_26444225_DEL [dm6]	CTTC	C	1.389e^-5	0.262	INTRON tx
3R	22269951	3R_22269951_INS [dm3] 3R_26444229_INS [dm6]	A	AGAAAGTATATACTGCAAAA...	1.389e^-5	0.262	INTRON tx
3R	24021514	3R_24021514_SNP [dm3] 3R_28195792_SNP [dm6]	C	A	1.394e^-5	0.262	INTRON CG34354
X	395162	X_395162_SNP [dm3] X_501129_SNP [dm6]	C	T	1.418e^-5	0.262	INTRON svr
X	395217	X_395217_SNP [dm3] X_501184_SNP [dm6]	T	C	1.418e^-5	0.262	INTRON svr
X	8001692	X_8001692_SNP [dm3] X_8107659_SNP [dm6]	T	G	1.442e^-5	0.263	INTRON Gclc
3R	12118311	3R_12118311_SNP [dm3] 3R_16292589_SNP [dm6]	C	G	1.465e^-5	0.265	INTRON gish	TF binding site mE1_TFBS_cad
3L	22455042	3L_22455042_SNP [dm3] 3L_22461942_SNP [dm6]	C	T	1.586e^-5	0.282	UPSTREAM laza INTERGENIC
3R	20350624	3R_20350624_SNP [dm3] 3R_24524902_SNP [dm6]	A	G	1.588e^-5	0.282	UTR_5_PRIME CG13618
3L	20160409	3L_20160409_SNP [dm3] 3L_20167309_SNP [dm6]	G	T	1.617e^-5	0.282	INTRON CG42674
3R	13481302	3R_13481302_SNP [dm3] 3R_17655580_SNP [dm6]	T	G	1.624e^-5	0.282	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
X	5439474	X_5439474_SNP [dm3] X_5545441_SNP [dm6]	C	T	1.648e^-5	0.282	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	16196007	X_16196007_SNP [dm3] X_16301974_SNP [dm6]	T	C	1.659e^-5	0.282	INTRON CG3632	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3976475	2L_3976475_DEL [dm3] 2L_3976475_DEL [dm6]	AATA	G	1.665e^-5	0.282	INTRON fred
X	16881757	X_16881757_SNP [dm3] X_16987724_SNP [dm6]	T	C	1.720e^-5	0.286	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA
3R	11281434	3R_11281434_INS [dm3] 3R_15455712_INS [dm6]	C	CCGAGTC	1.740e^-5	0.286	INTRON AdamTS-A
2L	3975828	2L_3975828_SNP [dm3] 2L_3975828_SNP [dm6]	C	T	1.747e^-5	0.286	INTRON fred
3L	10610837	3L_10610837_SNP [dm3] 3L_10617737_SNP [dm6]	T	G	1.856e^-5	0.286	INTERGENIC
3R	16179911	3R_16179911_SNP [dm3] 3R_20354189_SNP [dm6]	G	T	1.932e^-5	0.286	INTERGENIC
X	7931219	X_7931219_SNP [dm3] X_8037186_SNP [dm6]	G	A	1.939e^-5	0.286	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2R	13641555	2R_13641555_SNP [dm3] 2R_17754050_SNP [dm6]	A	C	2.020e^-5	0.286	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13641564	2R_13641564_SNP [dm3] 2R_17754059_SNP [dm6]	G	A	2.020e^-5	0.286	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15547904	2L_15547904_SNP [dm3] 2L_15547904_SNP [dm6]	G	A	2.040e^-5	0.286	SYNONYMOUS_CODING Skadu
2L	15547928	2L_15547928_SNP [dm3] 2L_15547928_SNP [dm6]	A	G	2.040e^-5	0.286	SYNONYMOUS_CODING Skadu
3R	23688530	3R_23688530_SNP [dm3] 3R_27862808_SNP [dm6]	A	C	2.040e^-5	0.286	INTRON CG34353
2L	20105047	2L_20105047_SNP [dm3] 2L_20105047_SNP [dm6]	G	T	2.041e^-5	0.286	UPSTREAM CG13970 INTERGENIC	transposable element FlyBase
2R	16649046	2R_16649046_SNP [dm3] 2R_20761541_SNP [dm6]	A	G	2.058e^-5	0.286	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8094821	X_8094821_SNP [dm3] X_8200788_SNP [dm6]	G	A	2.058e^-5	0.286	INTRON sdt
X	20508540	X_20508540_SNP [dm3] X_20637513_SNP [dm6]	T	G	2.062e^-5	0.286	INTERGENIC
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	2.067e^-5	0.286	INTERGENIC
3L	11537451	3L_11537451_SNP [dm3] 3L_11544351_SNP [dm6]	A	T	2.084e^-5	0.286	INTRON Mob2
X	5899914	X_5899914_DEL [dm3] X_6005881_DEL [dm6]	ATATC	G	2.140e^-5	0.286	DOWNSTREAM CR44498 INTERGENIC
X	394801	X_394801_SNP [dm3] X_500768_SNP [dm6]	A	C	2.141e^-5	0.286	UTR_5_PRIME svr INTRON svr	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	19593350	3R_19593350_SNP [dm3] 3R_23767628_SNP [dm6]	A	C	2.196e^-5	0.286	UPSTREAM CG10375 & 1 other DOWNSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	23025313	3R_23025313_SNP [dm3] 3R_27199591_SNP [dm6]	A	T	2.198e^-5	0.286	INTERGENIC	regulatory region REDfly_CRMs
3R	26170460	3R_26170460_SNP [dm3] 3R_30344738_SNP [dm6]	C	T	2.199e^-5	0.286	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9941262	2L_9941262_SNP [dm3] 2L_9941262_SNP [dm6]	C	A	2.201e^-5	0.286	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619
X	8710594	X_8710594_SNP [dm3] X_8816561_SNP [dm6]	A	C	2.251e^-5	0.286	INTERGENIC
2L	3975425	2L_3975425_SNP [dm3] 2L_3975425_SNP [dm6]	A	G	2.281e^-5	0.286	INTRON fred
2L	3975503	2L_3975503_SNP [dm3] 2L_3975503_SNP [dm6]	G	A	2.281e^-5	0.286	INTRON fred
2L	3975507	2L_3975507_SNP [dm3] 2L_3975507_SNP [dm6]	C	A	2.281e^-5	0.286	INTRON fred
2L	3975990	2L_3975990_SNP [dm3] 2L_3975990_SNP [dm6]	C	A	2.281e^-5	0.286	INTRON fred
2R	5048329	2R_5048329_SNP [dm3] 2R_9160824_SNP [dm6]	G	A	2.281e^-5	0.286	UTR_5_PRIME CG8008 UPSTREAM CR44283 INTRON CG8008
3R	11281415	3R_11281415_SNP [dm3] 3R_15455693_SNP [dm6]	A	G	2.281e^-5	0.286	INTRON AdamTS-A
3R	11281490	3R_11281490_SNP [dm3] 3R_15455768_SNP [dm6]	G	A	2.281e^-5	0.286	INTRON AdamTS-A
3R	11281500	3R_11281500_SNP [dm3] 3R_15455778_SNP [dm6]	T	G	2.281e^-5	0.286	INTRON AdamTS-A
3R	23309217	3R_23309217_SNP [dm3] 3R_27483495_SNP [dm6]	G	A	2.281e^-5	0.286	DOWNSTREAM Cyp6a18 INTERGENIC
3R	5147613	3R_5147613_SNP [dm3] 3R_9321891_SNP [dm6]	A	T	2.281e^-5	0.286	NON_SYNONYMOUS_CODING HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8327234	X_8327234_SNP [dm3] X_8433201_SNP [dm6]	G	C	2.281e^-5	0.286	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other
X	8987513	X_8987513_SNP [dm3] X_9093480_SNP [dm6]	C	T	2.281e^-5	0.286	DOWNSTREAM CG7766 & 1 other INTERGENIC
X	8987580	X_8987580_SNP [dm3] X_9093547_SNP [dm6]	A	T	2.281e^-5	0.286	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8987586	X_8987586_INS [dm3] X_9093553_INS [dm6]	C	CC	2.281e^-5	0.286	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23680932	3R_23680932_SNP [dm3] 3R_27855210_SNP [dm6]	C	T	2.332e^-5	0.289	INTRON CG34353
3R	23680966	3R_23680966_SNP [dm3] 3R_27855244_SNP [dm6]	C	A	2.332e^-5	0.289	INTRON CG34353
2L	3975001	2L_3975001_SNP [dm3] 2L_3975001_SNP [dm6]	C	A	2.393e^-5	0.294	INTRON fred
2L	20096296	2L_20096296_DEL [dm3] 2L_20096296_DEL [dm6]	TT	T	2.485e^-5	0.297	DOWNSTREAM mRpS18B & 1 other INTERGENIC
2R	9831719	2R_9831719_DEL [dm3] 2R_13944214_DEL [dm6]	TGTGTGTATT	T	2.495e^-5	0.297	UTR_3_PRIME AGO1 UPSTREAM DJ-1alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17233703	3R_17233703_SNP [dm3] 3R_21407981_SNP [dm6]	C	T	2.532e^-5	0.297	INTRON CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	17233740	3R_17233740_SNP [dm3] 3R_21408018_SNP [dm6]	T	A	2.532e^-5	0.297	SYNONYMOUS_CODING CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	21225991	X_21225991_SNP [dm3] X_21354964_SNP [dm6]	G	A	2.533e^-5	0.297	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13901817	2L_13901817_SNP [dm3] 2L_13901817_SNP [dm6]	A	G	2.544e^-5	0.297	SYNONYMOUS_CODING Smg5
3R	23318921	3R_23318921_SNP [dm3] 3R_27493199_SNP [dm6]	G	C	2.629e^-5	0.297	INTERGENIC
3R	15065650	3R_15065650_INS [dm3] 3R_19239928_INS [dm6]	T	TT	2.678e^-5	0.297	INTRON unc79
3R	26170405	3R_26170405_SNP [dm3] 3R_30344683_SNP [dm6]	T	G	2.730e^-5	0.297	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26170478	3R_26170478_SNP [dm3] 3R_30344756_SNP [dm6]	A	C	2.730e^-5	0.297	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5370115	X_5370115_DEL [dm3] X_5476082_DEL [dm6]	GAAAAGCGG	G	2.736e^-5	0.297	INTRON SPR
X	429255	X_429255_INS [dm3] X_535222_INS [dm6]	T	TTCGTT	2.742e^-5	0.297	INTRON Appl	TF binding site mE1_TFBS_HSA
3R	1717799	3R_1717799_SNP [dm3] 3R_5892077_SNP [dm6]	A	G	2.758e^-5	0.297	INTRON CG34113
3R	6250760	3R_6250760_SNP [dm3] 3R_10425038_SNP [dm6]	C	T	2.768e^-5	0.297	INTERGENIC
3R	11191117	3R_11191117_SNP [dm3] 3R_15365395_SNP [dm6]	G	A	2.821e^-5	0.297	INTRON CG34404	TF binding site mE1_TFBS_chinmo
3R	17920008	3R_17920008_SNP [dm3] 3R_22094286_SNP [dm6]	T	A	2.822e^-5	0.297	INTRON CG5778
3R	17953555	3R_17953555_SNP [dm3] 3R_22127833_SNP [dm6]	A	G	2.843e^-5	0.297	INTRON CG42390
2R	16748674	2R_16748674_SNP [dm3] 2R_20861169_SNP [dm6]	G	A	2.851e^-5	0.297	INTERGENIC
3R	4068029	3R_4068029_SNP [dm3] 3R_8242307_SNP [dm6]	T	C	2.891e^-5	0.297	UTR_3_PRIME CG9636
3L	16412479	3L_16412479_SNP [dm3] 3L_16419379_SNP [dm6]	A	C	2.909e^-5	0.297	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16412488	3L_16412488_SNP [dm3] 3L_16419388_SNP [dm6]	A	T	2.909e^-5	0.297	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20794907	3R_20794907_SNP [dm3] 3R_24969185_SNP [dm6]	G	T	2.909e^-5	0.297	INTERGENIC
3R	20382791	3R_20382791_SNP [dm3] 3R_24557069_SNP [dm6]	A	C	2.928e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20382856	3R_20382856_SNP [dm3] 3R_24557134_SNP [dm6]	A	G	2.928e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20382869	3R_20382869_SNP [dm3] 3R_24557147_SNP [dm6]	T	A	2.928e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20382887	3R_20382887_SNP [dm3] 3R_24557165_SNP [dm6]	C	A	2.928e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20382895	3R_20382895_SNP [dm3] 3R_24557173_SNP [dm6]	A	G	3.019e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20382915	3R_20382915_SNP [dm3] 3R_24557193_SNP [dm6]	G	A	3.019e^-5	0.297	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20101198	2L_20101198_SNP [dm3] 2L_20101198_SNP [dm6]	C	T	3.043e^-5	0.297	INTRON Kua
2L	3954626	2L_3954626_SNP [dm3] 2L_3954626_SNP [dm6]	A	G	3.056e^-5	0.297	INTRON fred
X	18369914	X_18369914_SNP [dm3] X_18475881_SNP [dm6]	A	G	3.079e^-5	0.297	INTRON CG32547
X	16881823	X_16881823_SNP [dm3] X_16987790_SNP [dm6]	G	A	3.085e^-5	0.297	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1105087	2L_1105087_SNP [dm3] 2L_1105087_SNP [dm6]	G	T	3.101e^-5	0.297	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3976460	2L_3976460_SNP [dm3] 2L_3976460_SNP [dm6]	A	C	3.101e^-5	0.297	INTRON fred
2L	882925	2L_882925_SNP [dm3] 2L_882925_SNP [dm6]	C	A	3.116e^-5	0.297	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18613190	X_18613190_SNP [dm3] X_18719157_SNP [dm6]	T	C	3.175e^-5	0.297	INTRON CCKLR-17D1
3R	25096510	3R_25096510_SNP [dm3] 3R_29270788_SNP [dm6]	A	C	3.189e^-5	0.297	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
X	21922353	X_21922353_SNP [dm3] X_22520517_SNP [dm6]	A	G	3.196e^-5	0.297	INTRON CG17600
2L	20090072	2L_20090072_SNP [dm3] 2L_20090072_SNP [dm6]	A	G	3.206e^-5	0.297	NON_SYNONYMOUS_CODING CG10747 DOWNSTREAM neb
X	16881540	X_16881540_SNP [dm3] X_16987507_SNP [dm6]	T	A	3.276e^-5	0.297	UPSTREAM CG45002 INTRON CG45002
3R	18217073	3R_18217073_INS [dm3] 3R_22391351_INS [dm6]	T	TT	3.288e^-5	0.297	DOWNSTREAM CG13857 INTRON CG7059	TF binding site mE1_TFBS_cad
2R	15931061	2R_15931061_SNP [dm3] 2R_20043556_SNP [dm6]	T	C	3.292e^-5	0.297	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19158488	3R_19158488_SNP [dm3] 3R_23332766_SNP [dm6]	C	T	3.292e^-5	0.297	INTRON pnt
3R	19154324	3R_19154324_SNP [dm3] 3R_23328602_SNP [dm6]	T	A	3.296e^-5	0.297	INTRON pnt
3R	25219905	3R_25219905_SNP [dm3] 3R_29394183_SNP [dm6]	T	G	3.308e^-5	0.297	INTRON Ptp99A
X	5899798	X_5899798_SNP [dm3] X_6005765_SNP [dm6]	A	G	3.341e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5899845	X_5899845_SNP [dm3] X_6005812_SNP [dm6]	C	T	3.341e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC
X	5899846	X_5899846_SNP [dm3] X_6005813_SNP [dm6]	G	A	3.341e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC
X	5899854	X_5899854_SNP [dm3] X_6005821_SNP [dm6]	A	G	3.341e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC
X	5899871	X_5899871_SNP [dm3] X_6005838_SNP [dm6]	A	G	3.341e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC
X	5899907	X_5899907_SNP [dm3] X_6005874_SNP [dm6]	T	G	3.342e^-5	0.297	DOWNSTREAM CR44498 INTERGENIC
3R	25395727	3R_25395727_SNP [dm3] 3R_29570005_SNP [dm6]	A	G	3.344e^-5	0.297	INTERGENIC
3R	19158818	3R_19158818_SNP [dm3] 3R_23333096_SNP [dm6]	A	C	3.366e^-5	0.297	INTRON pnt
3R	16179805	3R_16179805_SNP [dm3] 3R_20354083_SNP [dm6]	G	A	3.369e^-5	0.297	INTERGENIC
3R	16179821	3R_16179821_SNP [dm3] 3R_20354099_SNP [dm6]	A	T	3.369e^-5	0.297	INTERGENIC
3R	16179862	3R_16179862_SNP [dm3] 3R_20354140_SNP [dm6]	A	T	3.369e^-5	0.297	INTERGENIC
3R	16179880	3R_16179880_SNP [dm3] 3R_20354158_SNP [dm6]	C	T	3.369e^-5	0.297	INTERGENIC
3R	16179901	3R_16179901_SNP [dm3] 3R_20354179_SNP [dm6]	T	C	3.369e^-5	0.297	INTERGENIC
3R	16179974	3R_16179974_SNP [dm3] 3R_20354252_SNP [dm6]	G	A	3.369e^-5	0.297	INTERGENIC
2L	9352772	2L_9352772_SNP [dm3] 2L_9352772_SNP [dm6]	A	T	3.408e^-5	0.298	INTERGENIC
3R	19842652	3R_19842652_SNP [dm3] 3R_24016930_SNP [dm6]	G	A	3.408e^-5	0.298	INTRON KrT95D
2L	20112685	2L_20112685_SNP [dm3] 2L_20112685_SNP [dm6]	T	C	3.434e^-5	0.299	INTERGENIC	transposable element FlyBase
3R	20382859	3R_20382859_SNP [dm3] 3R_24557137_SNP [dm6]	G	T	3.447e^-5	0.299	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16649156	2R_16649156_SNP [dm3] 2R_20761651_SNP [dm6]	G	A	3.515e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19446579	X_19446579_INS [dm3] X_19552546_INS [dm6]	C	CG	3.549e^-5	0.305	DOWNSTREAM mir-973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20092421	2L_20092421_SNP [dm3] 2L_20092421_SNP [dm6]	G	A	3.640e^-5	0.31	SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	10901664	X_10901664_SNP [dm3] X_11007631_SNP [dm6]	G	T	3.663e^-5	0.31	INTRON CG42339
2R	10314552	2R_10314552_SNP [dm3] 2R_14427047_SNP [dm6]	G	A	3.685e^-5	0.31	DOWNSTREAM phyl INTERGENIC
2R	10314556	2R_10314556_INS [dm3] 2R_14427051_INS [dm6]	A	AT	3.685e^-5	0.31	DOWNSTREAM phyl INTERGENIC
2L	3976469	2L_3976469_SNP [dm3] 2L_3976469_SNP [dm6]	T	A	3.746e^-5	0.314	INTRON fred
3R	23318759	3R_23318759_SNP [dm3] 3R_27493037_SNP [dm6]	G	C	3.800e^-5	0.317	INTERGENIC
3R	21180252	3R_21180252_DEL [dm3] 3R_25354530_DEL [dm6]	ATGTA	A	3.864e^-5	0.318	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	882856	2L_882856_SNP [dm3] 2L_882856_SNP [dm6]	G	A	3.917e^-5	0.318	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26669693	3R_26669693_SNP [dm3] 3R_30843971_SNP [dm6]	A	G	3.949e^-5	0.318	INTERGENIC
3R	16514372	3R_16514372_SNP [dm3] 3R_20688650_SNP [dm6]	C	T	3.950e^-5	0.318	DOWNSTREAM Oamb INTERGENIC
2L	3179954	2L_3179954_SNP [dm3] 2L_3179954_SNP [dm6]	A	G	3.970e^-5	0.318	INTRON CG34393
X	21921575	X_21921575_SNP [dm3] X_22519739_SNP [dm6]	A	G	3.978e^-5	0.318	INTRON CG17600
3R	22288727	3R_22288727_SNP [dm3] 3R_26463005_SNP [dm6]	C	G	4.007e^-5	0.318	INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23886130	3R_23886130_SNP [dm3] 3R_28060408_SNP [dm6]	C	A	4.038e^-5	0.318	INTRON CG34362
3R	19673516	3R_19673516_SNP [dm3] 3R_23847794_SNP [dm6]	A	G	4.041e^-5	0.318	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16881836	X_16881836_SNP [dm3] X_16987803_SNP [dm6]	C	T	4.045e^-5	0.318	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16881547	X_16881547_SNP [dm3] X_16987514_SNP [dm6]	T	A	4.049e^-5	0.318	UPSTREAM CG45002 INTRON CG45002
X	16881667	X_16881667_SNP [dm3] X_16987634_SNP [dm6]	T	G	4.049e^-5	0.318	UPSTREAM CG45002 INTRON CG45002
X	16881695	X_16881695_SNP [dm3] X_16987662_SNP [dm6]	T	A	4.049e^-5	0.318	UPSTREAM CG45002 INTRON CG45002
3R	26474478	3R_26474478_SNP [dm3] 3R_30648756_SNP [dm6]	A	G	4.055e^-5	0.318	UPSTREAM CG34432 & 1 other INTERGENIC
3L	15755168	3L_15755168_SNP [dm3] 3L_15762068_SNP [dm6]	A	C	4.064e^-5	0.318	INTERGENIC
3R	15403647	3R_15403647_SNP [dm3] 3R_19577925_SNP [dm6]	A	C	4.152e^-5	0.323	INTRON Dys
2L	20105166	2L_20105166_INS [dm3] 2L_20105166_INS [dm6]	G	GTGATCGG	4.201e^-5	0.326	INTERGENIC	transposable element FlyBase
3R	16179853	3R_16179853_SNP [dm3] 3R_20354131_SNP [dm6]	A	T	4.230e^-5	0.327	INTERGENIC
3R	24110102	3R_24110102_SNP [dm3] 3R_28284380_SNP [dm6]	A	G	4.347e^-5	0.33	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	24110177	3R_24110177_SNP [dm3] 3R_28284455_SNP [dm6]	A	T	4.347e^-5	0.33	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	24110231	3R_24110231_SNP [dm3] 3R_28284509_SNP [dm6]	A	T	4.347e^-5	0.33	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	4.347e^-5	0.33	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15435372	3R_15435372_SNP [dm3] 3R_19609650_SNP [dm6]	A	C	4.372e^-5	0.331	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
2L	20105257	2L_20105257_SNP [dm3] 2L_20105257_SNP [dm6]	C	G	4.393e^-5	0.331	INTERGENIC	transposable element FlyBase
2R	18913067	2R_18913067_SNP [dm3] 2R_23025544_SNP [dm6]	T	A	4.419e^-5	0.331	INTRON twi & 1 other
3L	621018	3L_621018_SNP [dm3] 3L_621018_SNP [dm6]	A	C	4.447e^-5	0.331	UTR_3_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	20086429	2L_20086429_SNP [dm3] 2L_20086429_SNP [dm6]	A	C	4.469e^-5	0.331	INTRON neb	TF binding site BDTNP1_TFBS_dl
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	4.504e^-5	0.331	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2862131	3R_2862131_SNP [dm3] 3R_7036409_SNP [dm6]	C	T	4.536e^-5	0.331	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21922362	X_21922362_SNP [dm3] X_22520526_SNP [dm6]	C	G	4.613e^-5	0.331	INTRON CG17600
2L	11108423	2L_11108423_SNP [dm3] 2L_11108423_SNP [dm6]	G	T	4.630e^-5	0.331	SYNONYMOUS_CODING l_2_gd1	TF binding site mE1_TFBS_chinmo
2L	560493	2L_560493_SNP [dm3] 2L_560493_SNP [dm6]	G	T	4.631e^-5	0.331	UTR_3_PRIME CG2789 UPSTREAM rempA DOWNSTREAM CG11835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15306332	3R_15306332_SNP [dm3] 3R_19480610_SNP [dm6]	A	G	4.643e^-5	0.331	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20090043	2L_20090043_SNP [dm3] 2L_20090043_SNP [dm6]	C	G	4.650e^-5	0.331	NON_SYNONYMOUS_CODING CG10747 DOWNSTREAM neb
X	17297872	X_17297872_SNP [dm3] X_17403839_SNP [dm6]	G	A	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297883	X_17297883_SNP [dm3] X_17403850_SNP [dm6]	T	A	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297884	X_17297884_SNP [dm3] X_17403851_SNP [dm6]	G	A	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297885	X_17297885_INS [dm3] X_17403852_INS [dm6]	A	AA	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297889	X_17297889_SNP [dm3] X_17403856_SNP [dm6]	A	G	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297896	X_17297896_SNP [dm3] X_17403863_SNP [dm6]	A	C	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297905	X_17297905_DEL [dm3] X_17403872_DEL [dm6]	TACAAT	C	4.704e^-5	0.331	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	23718778	3R_23718778_SNP [dm3] 3R_27893056_SNP [dm6]	A	G	4.774e^-5	0.333	INTRON CG34353
3R	25623493	3R_25623493_SNP [dm3] 3R_29797771_SNP [dm6]	A	G	4.913e^-5	0.333	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1104670	2L_1104670_SNP [dm3] 2L_1104670_SNP [dm6]	A	G	4.933e^-5	0.333	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5236447	3R_5236447_SNP [dm3] 3R_9410725_SNP [dm6]	A	G	4.963e^-5	0.333	UTR_3_PRIME Task7 UPSTREAM betaTub85D
3L	510716	3L_510716_SNP [dm3] 3L_510716_SNP [dm6]	A	G	4.980e^-5	0.333	INTRON klar
3R	16179806	3R_16179806_SNP [dm3] 3R_20354084_SNP [dm6]	G	A	5.010e^-5	0.333	INTERGENIC
3R	16179861	3R_16179861_SNP [dm3] 3R_20354139_SNP [dm6]	G	C	5.010e^-5	0.333	INTERGENIC
3R	15216293	3R_15216293_DEL [dm3] 3R_19390571_DEL [dm6]	CA	G	5.016e^-5	0.333	DOWNSTREAM CG3734 INTRON Ino80 & 1 other
2R	5399269	2R_5399269_SNP [dm3] 2R_9511764_SNP [dm6]	C	A	5.017e^-5	0.333	INTRON brp
3R	16179797	3R_16179797_SNP [dm3] 3R_20354075_SNP [dm6]	G	A	5.037e^-5	0.333	INTERGENIC
2R	9245008	2R_9245008_INS [dm3] 2R_13357503_INS [dm6]	A	AT	5.037e^-5	0.333	INTERGENIC
2R	7386878	2R_7386878_SNP [dm3] 2R_11499373_SNP [dm6]	G	A	5.044e^-5	0.333	INTRON inv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	17297877	X_17297877_SNP [dm3] X_17403844_SNP [dm6]	C	T	5.057e^-5	0.333	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	17407583	2L_17407583_SNP [dm3] 2L_17407583_SNP [dm6]	A	G	5.059e^-5	0.333	SYNONYMOUS_CODING CLIP-190	TF binding site mE1_TFBS_sens
3L	479928	3L_479928_DEL [dm3] 3L_479928_DEL [dm6]	TATGT	T	5.066e^-5	0.333	INTRON klar
X	21920167	X_21920167_SNP [dm3] X_22518331_SNP [dm6]	C	A	5.066e^-5	0.333	INTRON CG17600
X	7718387	X_7718387_SNP [dm3] X_7824354_SNP [dm6]	C	T	5.124e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8869448	3L_8869448_SNP [dm3] 3L_8876348_SNP [dm6]	T	C	5.148e^-5	0.333	INTRON dally
3R	18252651	3R_18252651_SNP [dm3] 3R_22426929_SNP [dm6]	G	C	5.154e^-5	0.333	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5440010	X_5440010_SNP [dm3] X_5545977_SNP [dm6]	C	T	5.158e^-5	0.333	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	20753107	3L_20753107_SNP [dm3] 3L_20760007_SNP [dm6]	T	C	5.166e^-5	0.333	DOWNSTREAM CG43251 INTERGENIC
X	5440300	X_5440300_SNP [dm3] X_5546267_SNP [dm6]	A	T	5.199e^-5	0.333	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15065524	3R_15065524_SNP [dm3] 3R_19239802_SNP [dm6]	G	T	5.218e^-5	0.333	INTRON unc79	TF binding site mE1_TFBS_bab1
3R	15065676	3R_15065676_SNP [dm3] 3R_19239954_SNP [dm6]	A	C	5.218e^-5	0.333	INTRON unc79
3R	15065684	3R_15065684_SNP [dm3] 3R_19239962_SNP [dm6]	A	G	5.218e^-5	0.333	INTRON unc79
3R	25268104	3R_25268104_SNP [dm3] 3R_29442382_SNP [dm6]	A	G	5.221e^-5	0.333	INTRON Ptp99A
3R	25268109	3R_25268109_SNP [dm3] 3R_29442387_SNP [dm6]	G	A	5.221e^-5	0.333	INTRON Ptp99A
3L	15532661	3L_15532661_SNP [dm3] 3L_15539561_SNP [dm6]	G	A	5.279e^-5	0.336	INTRON CrebA
2L	14056127	2L_14056127_SNP [dm3] 2L_14056127_SNP [dm6]	G	T	5.352e^-5	0.337	INTRON nAChRalpha5
3R	9585018	3R_9585018_SNP [dm3] 3R_13759296_SNP [dm6]	G	T	5.357e^-5	0.337	NON_SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22270013	3R_22270013_SNP [dm3] 3R_26444291_SNP [dm6]	T	G	5.382e^-5	0.337	INTRON tx
2L	1105402	2L_1105402_SNP [dm3] 2L_1105402_SNP [dm6]	A	G	5.402e^-5	0.337	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18612876	X_18612876_SNP [dm3] X_18718843_SNP [dm6]	G	C	5.424e^-5	0.337	INTRON CCKLR-17D1
3R	21467266	3R_21467266_SNP [dm3] 3R_25641544_SNP [dm6]	C	T	5.468e^-5	0.337	INTRON jigr1
3R	25108997	3R_25108997_SNP [dm3] 3R_29283275_SNP [dm6]	G	A	5.513e^-5	0.337	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	5899964	X_5899964_SNP [dm3] X_6005931_SNP [dm6]	G	A	5.560e^-5	0.337	DOWNSTREAM CR44498 INTERGENIC
2R	8326703	2R_8326703_SNP [dm3] 2R_12439198_SNP [dm6]	T	G	5.563e^-5	0.337	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23698667	3R_23698667_SNP [dm3] 3R_27872945_SNP [dm6]	G	C	5.643e^-5	0.337	UPSTREAM CG12426 INTRON CG34353
3R	15435318	3R_15435318_SNP [dm3] 3R_19609596_SNP [dm6]	T	C	5.659e^-5	0.337	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
3R	25034726	3R_25034726_DEL [dm3] 3R_29209004_DEL [dm6]	ATTGA	A	5.725e^-5	0.337	INTERGENIC
3R	20309961	3R_20309961_SNP [dm3] 3R_24484239_SNP [dm6]	C	G	5.752e^-5	0.337	INTERGENIC
3R	20309963	3R_20309963_INS [dm3] 3R_24484241_INS [dm6]	T	TTGATTCTT	5.752e^-5	0.337	INTERGENIC
3R	20309965	3R_20309965_SNP [dm3] 3R_24484243_SNP [dm6]	C	G	5.752e^-5	0.337	INTERGENIC
3R	20310010	3R_20310010_INS [dm3] 3R_24484288_INS [dm6]	A	AAGCGCAACATAAA...	5.752e^-5	0.337	INTERGENIC
3R	20310014	3R_20310014_SNP [dm3] 3R_24484292_SNP [dm6]	A	C	5.752e^-5	0.337	INTERGENIC
3L	6057311	3L_6057311_SNP [dm3] 3L_6064211_SNP [dm6]	C	T	5.778e^-5	0.337	INTERGENIC
3R	23362277	3R_23362277_DEL [dm3] 3R_27536555_DEL [dm6]	TT	T	5.783e^-5	0.337	EXON CR44289
X	21919437	X_21919437_DEL [dm3] X_22517601_DEL [dm6]	AACCCGATTGAGCA...	A	5.798e^-5	0.337	INTRON CG17600
3R	25030065	3R_25030065_SNP [dm3] 3R_29204343_SNP [dm6]	C	T	5.813e^-5	0.337	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5899811	X_5899811_SNP [dm3] X_6005778_SNP [dm6]	T	C	5.833e^-5	0.337	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	379490	X_379490_SNP [dm3] X_485457_SNP [dm6]	A	G	5.853e^-5	0.337	NON_SYNONYMOUS_CODING CG18273	TF binding site mE1_TFBS_sens
X	393153	X_393153_SNP [dm3] X_499120_SNP [dm6]	C	T	5.853e^-5	0.337	UPSTREAM svr INTRON svr EXON CR44892	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8564767	3L_8564767_SNP [dm3] 3L_8571667_SNP [dm6]	T	G	5.904e^-5	0.337	SPLICE_SITE_REGION rhea UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
X	18612910	X_18612910_SNP [dm3] X_18718877_SNP [dm6]	G	A	5.906e^-5	0.337	INTRON CCKLR-17D1
X	18612997	X_18612997_SNP [dm3] X_18718964_SNP [dm6]	G	T	5.948e^-5	0.337	INTRON CCKLR-17D1
X	8789870	X_8789870_SNP [dm3] X_8895837_SNP [dm6]	G	A	5.958e^-5	0.337	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2R	5399270	2R_5399270_SNP [dm3] 2R_9511765_SNP [dm6]	A	C	6.000e^-5	0.337	INTRON brp
X	5899800	X_5899800_SNP [dm3] X_6005767_SNP [dm6]	A	G	6.002e^-5	0.337	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17907839	3R_17907839_SNP [dm3] 3R_22082117_SNP [dm6]	G	T	6.027e^-5	0.337	INTRON CG13408
3R	3257673	3R_3257673_SNP [dm3] 3R_7431951_SNP [dm6]	G	A	6.093e^-5	0.337	INTERGENIC
2L	3179778	2L_3179778_SNP [dm3] 2L_3179778_SNP [dm6]	T	C	6.094e^-5	0.337	INTRON CG34393
3R	27140765	3R_27140765_SNP [dm3] 3R_31315043_SNP [dm6]	A	G	6.126e^-5	0.337	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9452359	2R_9452359_SNP [dm3] 2R_13564854_SNP [dm6]	C	G	6.161e^-5	0.337	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	24899265	3R_24899265_SNP [dm3] 3R_29073543_SNP [dm6]	A	G	6.181e^-5	0.337	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20745407	3R_20745407_SNP [dm3] 3R_24919685_SNP [dm6]	T	G	6.184e^-5	0.337	INTRON CG11168
X	16880148	X_16880148_SNP [dm3] X_16986115_SNP [dm6]	C	A	6.191e^-5	0.337	INTRON CG45002
X	5899968	X_5899968_SNP [dm3] X_6005935_SNP [dm6]	G	A	6.205e^-5	0.337	DOWNSTREAM CR44498 INTERGENIC
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	6.211e^-5	0.337	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24994503	3R_24994503_DEL [dm3] 3R_29168781_DEL [dm6]	ATATG	A	6.239e^-5	0.337	INTRON CG11898
3R	19534626	3R_19534626_SNP [dm3] 3R_23708904_SNP [dm6]	C	G	6.275e^-5	0.337	DOWNSTREAM CG31414 INTERGENIC
2L	20086410	2L_20086410_SNP [dm3] 2L_20086410_SNP [dm6]	G	T	6.283e^-5	0.337	INTRON neb	TF binding site BDTNP1_TFBS_dl
2L	20089813	2L_20089813_SNP [dm3] 2L_20089813_SNP [dm6]	C	T	6.283e^-5	0.337	UTR_3_PRIME CG10747 DOWNSTREAM neb
2L	20090975	2L_20090975_SNP [dm3] 2L_20090975_SNP [dm6]	A	T	6.283e^-5	0.337	UPSTREAM CG10721 INTRON CG10747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20092424	2L_20092424_SNP [dm3] 2L_20092424_SNP [dm6]	C	G	6.283e^-5	0.337	NON_SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20092872	2L_20092872_SNP [dm3] 2L_20092872_SNP [dm6]	C	T	6.283e^-5	0.337	SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20093202	2L_20093202_SNP [dm3] 2L_20093202_SNP [dm6]	G	A	6.283e^-5	0.337	UTR_3_PRIME Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	20093298	2L_20093298_SNP [dm3] 2L_20093298_SNP [dm6]	C	G	6.283e^-5	0.337	UPSTREAM nesd DOWNSTREAM CG10721 INTRON Taf13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	20094059	2L_20094059_SNP [dm3] 2L_20094059_SNP [dm6]	A	G	6.283e^-5	0.337	UTR_5_PRIME nesd UPSTREAM nesd & 1 other DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	20099085	2L_20099085_SNP [dm3] 2L_20099085_SNP [dm6]	G	C	6.283e^-5	0.337	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
2L	20099155	2L_20099155_SNP [dm3] 2L_20099155_SNP [dm6]	C	T	6.283e^-5	0.337	START_GAINED Kua UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
2L	20099632	2L_20099632_SNP [dm3] 2L_20099632_SNP [dm6]	C	T	6.283e^-5	0.337	INTRON Kua	TF binding site BDTNP1_TFBS_dl
2L	20103400	2L_20103400_SNP [dm3] 2L_20103400_SNP [dm6]	C	G	6.283e^-5	0.337	UTR_3_PRIME CG13970 DOWNSTREAM Kua
3R	17455886	3R_17455886_SNP [dm3] 3R_21630164_SNP [dm6]	T	G	6.393e^-5	0.341	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21088877	X_21088877_SNP [dm3] X_21217850_SNP [dm6]	G	C	6.425e^-5	0.341	UPSTREAM CG32523 INTRON CG32521
3L	506477	3L_506477_SNP [dm3] 3L_506477_SNP [dm6]	C	A	6.448e^-5	0.341	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	18166617	X_18166617_DEL [dm3] X_18272584_DEL [dm6]	AT	A	6.463e^-5	0.341	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24928007	3R_24928007_SNP [dm3] 3R_29102285_SNP [dm6]	G	A	6.486e^-5	0.341	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25627563	3R_25627563_SNP [dm3] 3R_29801841_SNP [dm6]	G	A	6.505e^-5	0.341	UTR_3_PRIME CG7834 DOWNSTREAM Ice	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24808773	3R_24808773_SNP [dm3] 3R_28983051_SNP [dm6]	C	A	6.528e^-5	0.341	INTERGENIC
3R	24808826	3R_24808826_SNP [dm3] 3R_28983104_SNP [dm6]	G	A	6.528e^-5	0.341	INTERGENIC
3R	26669592	3R_26669592_SNP [dm3] 3R_30843870_SNP [dm6]	C	T	6.537e^-5	0.341	INTERGENIC
3R	26669608	3R_26669608_SNP [dm3] 3R_30843886_SNP [dm6]	T	C	6.537e^-5	0.341	INTERGENIC
2R	19297599	2R_19297599_SNP [dm3] 2R_23410076_SNP [dm6]	C	T	6.557e^-5	0.341	INTERGENIC
2L	6493667	2L_6493667_SNP [dm3] 2L_6493667_SNP [dm6]	C	T	6.588e^-5	0.341	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21177967	3R_21177967_SNP [dm3] 3R_25352245_SNP [dm6]	G	T	6.589e^-5	0.341	INTRON Fur1
2L	20105175	2L_20105175_SNP [dm3] 2L_20105175_SNP [dm6]	G	C	6.698e^-5	0.345	INTERGENIC	transposable element FlyBase
3R	20539562	3R_20539562_SNP [dm3] 3R_24713840_SNP [dm6]	C	T	6.722e^-5	0.345	UPSTREAM CG13627 INTRON CG13627
3R	20350931	3R_20350931_SNP [dm3] 3R_24525209_SNP [dm6]	G	A	6.758e^-5	0.346	INTRON CG13618
3L	601620	3L_601620_SNP [dm3] 3L_601620_SNP [dm6]	T	C	6.819e^-5	0.348	INTRON CG13893
X	5899862	X_5899862_SNP [dm3] X_6005829_SNP [dm6]	C	A	6.854e^-5	0.348	DOWNSTREAM CR44498 INTERGENIC
X	3196585	X_3196585_DEL [dm3] X_3302552_DEL [dm6]	TATT	T	6.890e^-5	0.348	INTRON dnc
2L	20104207	2L_20104207_INS [dm3] 2L_20104207_INS [dm6]	A	ATTTATTA	6.922e^-5	0.348	UPSTREAM CG13970 DOWNSTREAM Kua INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17920027	3R_17920027_SNP [dm3] 3R_22094305_SNP [dm6]	A	G	6.976e^-5	0.348	INTRON CG5778
3R	17920038	3R_17920038_SNP [dm3] 3R_22094316_SNP [dm6]	A	T	6.976e^-5	0.348	INTRON CG5778
3R	24897487	3R_24897487_SNP [dm3] 3R_29071765_SNP [dm6]	G	A	6.997e^-5	0.348	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	24900244	3R_24900244_SNP [dm3] 3R_29074522_SNP [dm6]	T	C	6.997e^-5	0.348	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21095806	X_21095806_DEL [dm3] X_21224779_DEL [dm6]	GGCCGTAAATAGAGTGA...	G	7.008e^-5	0.348	INTRON CG32521	TF binding site mE1_TFBS_inv
2L	890221	2L_890221_SNP [dm3] 2L_890221_SNP [dm6]	G	C	7.009e^-5	0.348	INTERGENIC
X	4850298	X_4850298_SNP [dm3] X_4956265_SNP [dm6]	G	A	7.044e^-5	0.348	DOWNSTREAM Ptp4E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
X	4850300	X_4850300_DEL [dm3] X_4956267_DEL [dm6]	TC	T	7.044e^-5	0.348	DOWNSTREAM Ptp4E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	13552478	3L_13552478_SNP [dm3] 3L_13559378_SNP [dm6]	C	A	7.121e^-5	0.348	INTRON bru-3
2L	14062113	2L_14062113_SNP [dm3] 2L_14062113_SNP [dm6]	G	C	7.142e^-5	0.348	INTRON nAChRalpha5
3R	15403579	3R_15403579_SNP [dm3] 3R_19577857_SNP [dm6]	T	G	7.149e^-5	0.348	INTRON Dys
3R	22758752	3R_22758752_SNP [dm3] 3R_26933030_SNP [dm6]	A	T	7.175e^-5	0.348	INTRON sda
3R	22758757	3R_22758757_SNP [dm3] 3R_26933035_SNP [dm6]	G	C	7.175e^-5	0.348	INTRON sda
3R	22758759	3R_22758759_SNP [dm3] 3R_26933037_SNP [dm6]	A	T	7.175e^-5	0.348	INTRON sda
3R	22758760	3R_22758760_SNP [dm3] 3R_26933038_SNP [dm6]	C	A	7.175e^-5	0.348	INTRON sda
2R	9244427	2R_9244427_SNP [dm3] 2R_13356922_SNP [dm6]	G	C	7.182e^-5	0.348	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12345087	3L_12345087_SNP [dm3] 3L_12351987_SNP [dm6]	T	C	7.182e^-5	0.348	UPSTREAM CrzR INTERGENIC
2L	2717137	2L_2717137_SNP [dm3] 2L_2717137_SNP [dm6]	G	C	7.198e^-5	0.348	INTRON CG31690
2R	6329163	2R_6329163_SNP [dm3] 2R_10441658_SNP [dm6]	C	G	7.288e^-5	0.351	INTRON Galphao	TF binding site mE1_TFBS_cad
X	392340	X_392340_SNP [dm3] X_498307_SNP [dm6]	C	T	7.399e^-5	0.356	UPSTREAM CR44891 & 1 other INTRON svr EXON CR44892
2L	1104652	2L_1104652_SNP [dm3] 2L_1104652_SNP [dm6]	T	C	7.464e^-5	0.358	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9354747	2L_9354747_SNP [dm3] 2L_9354747_SNP [dm6]	C	G	7.490e^-5	0.358	INTERGENIC
X	16881683	X_16881683_SNP [dm3] X_16987650_SNP [dm6]	C	T	7.541e^-5	0.358	UPSTREAM CG45002 INTRON CG45002
3R	2971785	3R_2971785_SNP [dm3] 3R_7146063_SNP [dm6]	C	A	7.543e^-5	0.358	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
2L	20104243	2L_20104243_SNP [dm3] 2L_20104243_SNP [dm6]	C	A	7.550e^-5	0.358	UPSTREAM CG13970 DOWNSTREAM Kua INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10089492	X_10089492_SNP [dm3] X_10195459_SNP [dm6]	C	T	7.603e^-5	0.359	DOWNSTREAM CG43902 INTRON CR44894
3L	18201193	3L_18201193_SNP [dm3] 3L_18208093_SNP [dm6]	G	A	7.656e^-5	0.359	INTERGENIC
3L	18201225	3L_18201225_SNP [dm3] 3L_18208125_SNP [dm6]	A	G	7.656e^-5	0.359	INTERGENIC
3L	18201331	3L_18201331_MNP [dm3] 3L_18208231_MNP [dm6]	AGT	GTC	7.656e^-5	0.359	INTERGENIC
3L	13627827	3L_13627827_SNP [dm3] 3L_13634727_SNP [dm6]	A	C	7.701e^-5	0.361	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
3L	8425450	3L_8425450_SNP [dm3] 3L_8432350_SNP [dm6]	A	G	7.769e^-5	0.363	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
2L	5269139	2L_5269139_SNP [dm3] 2L_5269139_SNP [dm6]	A	T	7.840e^-5	0.363	SPLICE_SITE_REGION Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3R	9574384	3R_9574384_SNP [dm3] 3R_13748662_SNP [dm6]	G	C	7.842e^-5	0.363	INTRON CG34383
2L	20086283	2L_20086283_SNP [dm3] 2L_20086283_SNP [dm6]	A	G	7.843e^-5	0.363	INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3976459	2L_3976459_SNP [dm3] 2L_3976459_SNP [dm6]	T	A	7.865e^-5	0.363	INTRON fred
2L	3976466	2L_3976466_SNP [dm3] 2L_3976466_SNP [dm6]	T	A	7.865e^-5	0.363	INTRON fred
3R	18196253	3R_18196253_INS [dm3] 3R_22370531_INS [dm6]	T	TT	7.911e^-5	0.364	INTRON PyK	TF binding site mE1_TFBS_chinmo
X	5899807	X_5899807_SNP [dm3] X_6005774_SNP [dm6]	G	T	7.927e^-5	0.364	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5032109	3R_5032109_SNP [dm3] 3R_9206387_SNP [dm6]	G	A	7.942e^-5	0.364	INTRON pum
2L	3179829	2L_3179829_SNP [dm3] 2L_3179829_SNP [dm6]	T	C	7.974e^-5	0.364	INTRON CG34393
X	17250044	X_17250044_SNP [dm3] X_17356011_SNP [dm6]	C	T	8.087e^-5	0.367	INTERGENIC
3R	20310015	3R_20310015_SNP [dm3] 3R_24484293_SNP [dm6]	T	G	8.097e^-5	0.367	INTERGENIC
3L	22835296	3L_22835296_SNP [dm3] 3L_22842196_SNP [dm6]	A	G	8.110e^-5	0.367	DOWNSTREAM CR45659 INTERGENIC
2L	4045591	2L_4045591_SNP [dm3] 2L_4045591_SNP [dm6]	A	T	8.118e^-5	0.367	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4805659	3R_4805659_DEL [dm3] 3R_8979937_DEL [dm6]	GTATTTTTGATTAATATAAT...	G	8.130e^-5	0.367	UPSTREAM CAHbeta INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26475063	3R_26475063_SNP [dm3] 3R_30649341_SNP [dm6]	C	G	8.169e^-5	0.367	NON_SYNONYMOUS_CODING CG34432 UPSTREAM PH4alphaPV & 1 other
3L	6905046	3L_6905046_SNP [dm3] 3L_6911946_SNP [dm6]	C	T	8.188e^-5	0.367	DOWNSTREAM Prat2 INTERGENIC
3R	17907852	3R_17907852_SNP [dm3] 3R_22082130_SNP [dm6]	C	A	8.199e^-5	0.367	INTRON CG13408
2L	16363240	2L_16363240_SNP [dm3] 2L_16363240_SNP [dm6]	C	T	8.276e^-5	0.37	INTERGENIC
X	2684677	X_2684677_SNP [dm3] X_2790644_SNP [dm6]	A	G	8.309e^-5	0.37	UTR_3_PRIME w UPSTREAM CG32795 INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20235076	2L_20235076_SNP [dm3] 2L_20235076_SNP [dm6]	T	G	8.361e^-5	0.372	INTERGENIC
2L	3976760	2L_3976760_SNP [dm3] 2L_3976760_SNP [dm6]	T	C	8.395e^-5	0.372	INTRON fred
2R	17486295	2R_17486295_SNP [dm3] 2R_21598790_SNP [dm6]	C	T	8.400e^-5	0.372	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25702392	3R_25702392_SNP [dm3] 3R_29876670_SNP [dm6]	G	T	8.427e^-5	0.372	UPSTREAM CG31038 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	5899923	X_5899923_SNP [dm3] X_6005890_SNP [dm6]	G	T	8.563e^-5	0.377	DOWNSTREAM CR44498 INTERGENIC
2L	16364437	2L_16364437_SNP [dm3] 2L_16364437_SNP [dm6]	C	A	8.579e^-5	0.377	INTERGENIC	regulatory region REDfly_CRMs
2L	4305647	2L_4305647_SNP [dm3] 2L_4305647_SNP [dm6]	G	A	8.597e^-5	0.377	UTR_3_PRIME tutl INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15403318	3R_15403318_SNP [dm3] 3R_19577596_SNP [dm6]	T	G	8.620e^-5	0.377	INTRON Dys
3R	17920109	3R_17920109_SNP [dm3] 3R_22094387_SNP [dm6]	A	G	8.699e^-5	0.379	INTRON CG5778
3R	26474490	3R_26474490_SNP [dm3] 3R_30648768_SNP [dm6]	C	T	8.708e^-5	0.379	UPSTREAM CG34432 & 1 other INTERGENIC
2L	16979144	2L_16979144_SNP [dm3] 2L_16979144_SNP [dm6]	G	C	8.782e^-5	0.38	INTRON beat-IIIb
3R	17370002	3R_17370002_SNP [dm3] 3R_21544280_SNP [dm6]	G	T	8.785e^-5	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23344698	3R_23344698_SNP [dm3] 3R_27518976_SNP [dm6]	G	A	8.824e^-5	0.38	INTERGENIC
3R	23344711	3R_23344711_SNP [dm3] 3R_27518989_SNP [dm6]	A	G	8.824e^-5	0.38	INTERGENIC
2L	20092459	2L_20092459_SNP [dm3] 2L_20092459_SNP [dm6]	G	A	8.863e^-5	0.38	NON_SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	20770882	X_20770882_INS [dm3] X_20899855_INS [dm6]	A	AA	8.863e^-5	0.38	INTRON shakB
X	18613166	X_18613166_SNP [dm3] X_18719133_SNP [dm6]	G	A	8.962e^-5	0.383	INTRON CCKLR-17D1
X	355946	X_355946_SNP [dm3] X_461913_SNP [dm6]	A	G	8.979e^-5	0.383	NON_SYNONYMOUS_CODING ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	1326598	3L_1326598_SNP [dm3] 3L_1326598_SNP [dm6]	C	G	9.005e^-5	0.383	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11537437	3L_11537437_SNP [dm3] 3L_11544337_SNP [dm6]	A	C	9.023e^-5	0.383	INTRON Mob2
3L	11537440	3L_11537440_SNP [dm3] 3L_11544340_SNP [dm6]	T	A	9.023e^-5	0.383	INTRON Mob2
2R	15378327	2R_15378327_SNP [dm3] 2R_19490822_SNP [dm6]	C	A	9.045e^-5	0.383	SYNONYMOUS_CODING Oseg6	TF binding site mE1_TFBS_inv
2L	5415675	2L_5415675_SNP [dm3] 2L_5415675_SNP [dm6]	G	A	9.176e^-5	0.386	SYNONYMOUS_CODING H15	TF binding site mE1_TFBS_cad
3R	19740139	3R_19740139_SNP [dm3] 3R_23914417_SNP [dm6]	G	C	9.211e^-5	0.386	INTRON sba	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	17920064	3R_17920064_SNP [dm3] 3R_22094342_SNP [dm6]	T	C	9.241e^-5	0.386	INTRON CG5778
X	12380807	X_12380807_SNP [dm3] X_12486774_SNP [dm6]	T	C	9.275e^-5	0.386	UPSTREAM Cpr11A INTERGENIC
X	17254632	X_17254632_SNP [dm3] X_17360599_SNP [dm6]	A	G	9.278e^-5	0.386	INTERGENIC
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	9.334e^-5	0.386	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	19905088	3R_19905088_SNP [dm3] 3R_24079366_SNP [dm6]	T	A	9.334e^-5	0.386	INTRON 4EHP
3R	19905112	3R_19905112_DEL [dm3] 3R_24079390_DEL [dm6]	CC	T	9.334e^-5	0.386	INTRON 4EHP
3R	16017348	3R_16017348_SNP [dm3] 3R_20191626_SNP [dm6]	T	C	9.335e^-5	0.386	INTERGENIC
3L	621571	3L_621571_SNP [dm3] 3L_621571_SNP [dm6]	G	T	9.365e^-5	0.386	INTRON CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2R	19720041	2R_19720041_SNP [dm3] 2R_23832518_SNP [dm6]	T	C	9.413e^-5	0.386	INTRON CG5549
X	5899822	X_5899822_SNP [dm3] X_6005789_SNP [dm6]	T	C	9.417e^-5	0.386	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7949943	2L_7949943_SNP [dm3] 2L_7949943_SNP [dm6]	A	T	9.428e^-5	0.386	INTRON Snoo
3L	9914795	3L_9914795_SNP [dm3] 3L_9921695_SNP [dm6]	A	G	9.460e^-5	0.386	INTRON CG34356
X	21903483	X_21903483_SNP [dm3] X_22501647_SNP [dm6]	C	G	9.470e^-5	0.386	SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
X	17254649	X_17254649_DEL [dm3] X_17360616_DEL [dm6]	ATTCA	A	9.471e^-5	0.386	INTERGENIC
3R	25346807	3R_25346807_INS [dm3] 3R_29521085_INS [dm6]	T	TGTATCT	9.501e^-5	0.386	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2830768	2L_2830768_SNP [dm3] 2L_2830768_SNP [dm6]	T	C	9.504e^-5	0.386	UPSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19171695	3R_19171695_SNP [dm3] 3R_23345973_SNP [dm6]	A	C	9.576e^-5	0.387	UTR_5_PRIME pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16764510	3L_16764510_SNP [dm3] 3L_16771410_SNP [dm6]	G	T	9.578e^-5	0.387	INTRON Nrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18292812	2R_18292812_INS [dm3] 2R_22405307_INS [dm6]	G	GAAGAGCGG	9.587e^-5	0.387	INTRON CG6044
3L	9806536	3L_9806536_SNP [dm3] 3L_9813436_SNP [dm6]	A	T	9.637e^-5	0.388	UPSTREAM CG43897 INTERGENIC
3R	17919998	3R_17919998_SNP [dm3] 3R_22094276_SNP [dm6]	T	C	9.690e^-5	0.389	INTRON CG5778
3R	17920046	3R_17920046_SNP [dm3] 3R_22094324_SNP [dm6]	G	A	9.690e^-5	0.389	INTRON CG5778
2R	12093336	2R_12093336_SNP [dm3] 2R_16205831_SNP [dm6]	G	A	9.715e^-5	0.389	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
3R	4588997	3R_4588997_SNP [dm3] 3R_8763275_SNP [dm6]	A	C	9.785e^-5	0.39	INTRON CG11768 & 1 other
3R	4588998	3R_4588998_SNP [dm3] 3R_8763276_SNP [dm6]	A	T	9.785e^-5	0.39	INTRON CG11768 & 1 other
3L	15632563	3L_15632563_SNP [dm3] 3L_15639463_SNP [dm6]	C	A	9.865e^-5	0.392	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
3L	15594898	3L_15594898_SNP [dm3] 3L_15601798_SNP [dm6]	T	A	9.895e^-5	0.393	SYNONYMOUS_CODING RhoGAP71E INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1021223	3L_1021223_SNP [dm3] 3L_1021223_SNP [dm6]	C	A	9.952e^-5	0.394	INTRON trio
2R	10123262	2R_10123262_SNP [dm3] 2R_14235757_SNP [dm6]	T	A	1.002e^-4	0.396	UPSTREAM Opa1 DOWNSTREAM CG8485 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11850616	3L_11850616_SNP [dm3] 3L_11857516_SNP [dm6]	A	G	1.009e^-4	0.398	INTRON CG44837
3L	6896118	3L_6896118_SNP [dm3] 3L_6903018_SNP [dm6]	C	T	1.016e^-4	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21903162	X_21903162_SNP [dm3] X_22501326_SNP [dm6]	T	C	1.020e^-4	0.4	SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
2R	7323973	2R_7323973_SNP [dm3] 2R_11436468_SNP [dm6]	A	C	1.029e^-4	0.4	INTRON CG7777
X	351965	X_351965_SNP [dm3] X_457932_SNP [dm6]	C	T	1.037e^-4	0.4	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	351992	X_351992_SNP [dm3] X_457959_SNP [dm6]	A	T	1.037e^-4	0.4	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	352000	X_352000_SNP [dm3] X_457967_SNP [dm6]	A	G	1.037e^-4	0.4	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1717742	3R_1717742_DEL [dm3] 3R_5892020_DEL [dm6]	TCCT	T	1.037e^-4	0.4	INTRON CG34113
X	7931149	X_7931149_SNP [dm3] X_8037116_SNP [dm6]	T	A	1.039e^-4	0.4	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
X	7931151	X_7931151_SNP [dm3] X_8037118_SNP [dm6]	T	C	1.039e^-4	0.4	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
X	7931162	X_7931162_SNP [dm3] X_8037129_SNP [dm6]	T	G	1.039e^-4	0.4	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
X	7931165	X_7931165_SNP [dm3] X_8037132_SNP [dm6]	T	G	1.039e^-4	0.4	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2L	6091838	2L_6091838_SNP [dm3] 2L_6091838_SNP [dm6]	C	T	1.052e^-4	0.403	UTR_5_PRIME Kr-h1 UTR_3_PRIME CG45075 INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14055452	2L_14055452_SNP [dm3] 2L_14055452_SNP [dm6]	C	T	1.053e^-4	0.403	INTRON nAChRalpha5
2L	620366	2L_620366_SNP [dm3] 2L_620366_SNP [dm6]	A	T	1.058e^-4	0.403	UTR_3_PRIME lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19731320	X_19731320_DEL [dm3] X_19837287_DEL [dm6]	AGTCAGAA	A	1.058e^-4	0.403	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12595456	X_12595456_SNP [dm3] X_12701423_SNP [dm6]	G	A	1.061e^-4	0.403	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3R	15013138	3R_15013138_SNP [dm3] 3R_19187416_SNP [dm6]	C	T	1.067e^-4	0.403	INTRON CG31475	TF binding site mE1_TFBS_inv
3R	25565763	3R_25565763_SNP [dm3] 3R_29740041_SNP [dm6]	A	G	1.069e^-4	0.403	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20486093	X_20486093_INS [dm3] X_20615066_INS [dm6]	T	TT	1.073e^-4	0.403	INTRON RunxA	transposable element FlyBase
3R	23884823	3R_23884823_SNP [dm3] 3R_28059101_SNP [dm6]	G	A	1.074e^-4	0.403	INTRON CG34362
3R	23885811	3R_23885811_SNP [dm3] 3R_28060089_SNP [dm6]	C	T	1.074e^-4	0.403	INTRON CG34362
3R	23886067	3R_23886067_DEL [dm3] 3R_28060345_DEL [dm6]	TT	T	1.074e^-4	0.403	INTRON CG34362
3R	23887340	3R_23887340_SNP [dm3] 3R_28061618_SNP [dm6]	T	C	1.074e^-4	0.403	INTRON CG34362
3R	23887395	3R_23887395_SNP [dm3] 3R_28061673_SNP [dm6]	A	G	1.074e^-4	0.403	INTRON CG34362
2L	20086420	2L_20086420_SNP [dm3] 2L_20086420_SNP [dm6]	G	A	1.080e^-4	0.403	INTRON neb	TF binding site BDTNP1_TFBS_dl
X	6636218	X_6636218_SNP [dm3] X_6742185_SNP [dm6]	G	T	1.083e^-4	0.403	SYNONYMOUS_CODING RpL17 DOWNSTREAM snoRNA:Psi28S-3436b & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16283659	2R_16283659_SNP [dm3] 2R_20396154_SNP [dm6]	G	T	1.083e^-4	0.403	INTERGENIC
2R	14912708	2R_14912708_SNP [dm3] 2R_19025203_SNP [dm6]	G	A	1.083e^-4	0.403	INTRON 5-HT1B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	570724	3L_570724_SNP [dm3] 3L_570724_SNP [dm6]	G	A	1.090e^-4	0.405	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11551607	X_11551607_SNP [dm3] X_11657574_SNP [dm6]	T	C	1.095e^-4	0.405	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2986832	2L_2986832_SNP [dm3] 2L_2986832_SNP [dm6]	G	A	1.097e^-4	0.405	INTRON Chd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25283650	3R_25283650_DEL [dm3] 3R_29457928_DEL [dm6]	CG	C	1.100e^-4	0.405	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18776081	3R_18776081_SNP [dm3] 3R_22950359_SNP [dm6]	C	T	1.100e^-4	0.405	INTRON klg
3L	8564783	3L_8564783_SNP [dm3] 3L_8571683_SNP [dm6]	C	A	1.103e^-4	0.405	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
2R	18192767	2R_18192767_SNP [dm3] 2R_22305262_SNP [dm6]	C	A	1.106e^-4	0.405	INTRON wdp
3R	10271002	3R_10271002_SNP [dm3] 3R_14445280_SNP [dm6]	T	G	1.109e^-4	0.406	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23680902	3R_23680902_SNP [dm3] 3R_27855180_SNP [dm6]	A	G	1.113e^-4	0.406	INTRON CG34353
3R	14085531	3R_14085531_SNP [dm3] 3R_18259809_SNP [dm6]	T	C	1.114e^-4	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23681475	3R_23681475_SNP [dm3] 3R_27855753_SNP [dm6]	C	T	1.126e^-4	0.409	INTRON CG34353
3R	22986669	3R_22986669_SNP [dm3] 3R_27160947_SNP [dm6]	G	A	1.127e^-4	0.409	UPSTREAM CG5909 INTERGENIC
3L	17997323	3L_17997323_SNP [dm3] 3L_18004223_SNP [dm6]	G	T	1.136e^-4	0.41	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
3L	17997325	3L_17997325_SNP [dm3] 3L_18004225_SNP [dm6]	T	A	1.136e^-4	0.41	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
X	8987588	X_8987588_SNP [dm3] X_9093555_SNP [dm6]	T	C	1.137e^-4	0.41	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1819972	3L_1819972_SNP [dm3] 3L_1819972_SNP [dm6]	T	G	1.138e^-4	0.41	INTRON GV1
3L	8564770	3L_8564770_SNP [dm3] 3L_8571670_SNP [dm6]	T	G	1.139e^-4	0.41	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3L	569267	3L_569267_SNP [dm3] 3L_569267_SNP [dm6]	C	T	1.150e^-4	0.412	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	569281	3L_569281_SNP [dm3] 3L_569281_SNP [dm6]	T	C	1.150e^-4	0.412	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2474398	3L_2474398_SNP [dm3] 3L_2474398_SNP [dm6]	C	A	1.153e^-4	0.412	DOWNSTREAM CG16762 INTRON CG45186
X	21093150	X_21093150_DEL [dm3] X_21222123_DEL [dm6]	AATTCATATGATTTTTGGGC...	A	1.156e^-4	0.412	INTRON CG32521
3R	20480172	3R_20480172_SNP [dm3] 3R_24654450_SNP [dm6]	C	T	1.161e^-4	0.412	SYNONYMOUS_CODING CG31125 UPSTREAM CG6695	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	21927744	X_21927744_SNP [dm3] X_22525908_SNP [dm6]	T	A	1.161e^-4	0.412	INTRON CG17600
3R	23695122	3R_23695122_SNP [dm3] 3R_27869400_SNP [dm6]	T	C	1.163e^-4	0.412	INTRON CG34353
2R	10311636	2R_10311636_SNP [dm3] 2R_14424131_SNP [dm6]	C	A	1.168e^-4	0.412	UTR_3_PRIME CG17386
2L	14471077	2L_14471077_SNP [dm3] 2L_14471077_SNP [dm6]	C	T	1.174e^-4	0.412	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8731797	X_8731797_SNP [dm3] X_8837764_SNP [dm6]	C	T	1.175e^-4	0.412	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	17005371	2L_17005371_SNP [dm3] 2L_17005371_SNP [dm6]	A	T	1.178e^-4	0.412	INTERGENIC
X	10083207	X_10083207_SNP [dm3] X_10189174_SNP [dm6]	A	G	1.181e^-4	0.412	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
3R	2845942	3R_2845942_SNP [dm3] 3R_7020220_SNP [dm6]	G	A	1.181e^-4	0.412	INTERGENIC
X	15527192	X_15527192_SNP [dm3] X_15633159_SNP [dm6]	C	T	1.185e^-4	0.412	UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8731908	X_8731908_SNP [dm3] X_8837875_SNP [dm6]	G	A	1.190e^-4	0.412	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1
X	8731911	X_8731911_SNP [dm3] X_8837878_SNP [dm6]	T	A	1.190e^-4	0.412	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10610800	3L_10610800_SNP [dm3] 3L_10617700_SNP [dm6]	A	G	1.190e^-4	0.412	INTERGENIC
3L	10610835	3L_10610835_SNP [dm3] 3L_10617735_SNP [dm6]	G	T	1.190e^-4	0.412	INTERGENIC
3L	11267128	3L_11267128_SNP [dm3] 3L_11274028_SNP [dm6]	G	T	1.192e^-4	0.412	EXON CR44720	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	884447	3L_884447_SNP [dm3] 3L_884447_SNP [dm6]	C	G	1.193e^-4	0.412	INTRON CG32479
3R	16404734	3R_16404734_SNP [dm3] 3R_20579012_SNP [dm6]	G	A	1.195e^-4	0.412	SYNONYMOUS_CODING EloB DOWNSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8895790	2L_8895790_SNP [dm3] 2L_8895790_SNP [dm6]	G	C	1.197e^-4	0.412	INTERGENIC
X	4168101	X_4168101_SNP [dm3] X_4274068_SNP [dm6]	A	G	1.198e^-4	0.412	INTERGENIC
2L	14056086	2L_14056086_MNP [dm3] 2L_14056086_MNP [dm6]	GAA	TTT	1.202e^-4	0.413	INTRON nAChRalpha5
3R	16017195	3R_16017195_SNP [dm3] 3R_20191473_SNP [dm6]	T	C	1.204e^-4	0.413	INTERGENIC
X	18167432	X_18167432_SNP [dm3] X_18273399_SNP [dm6]	C	T	1.208e^-4	0.413	INTERGENIC
X	5899803	X_5899803_SNP [dm3] X_6005770_SNP [dm6]	C	G	1.212e^-4	0.413	DOWNSTREAM CR44498 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2831918	X_2831918_SNP [dm3] X_2937885_SNP [dm6]	A	G	1.214e^-4	0.413	NON_SYNONYMOUS_CODING CG3598 UPSTREAM CG14420 INTRON kirre
2L	560474	2L_560474_SNP [dm3] 2L_560474_SNP [dm6]	G	T	1.216e^-4	0.413	UTR_3_PRIME CG2789 UPSTREAM rempA DOWNSTREAM CG11835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26039539	3R_26039539_SNP [dm3] 3R_30213817_SNP [dm6]	G	A	1.216e^-4	0.413	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
3R	10615780	3R_10615780_SNP [dm3] 3R_14790058_SNP [dm6]	A	G	1.220e^-4	0.414	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7929895	X_7929895_SNP [dm3] X_8035862_SNP [dm6]	T	C	1.231e^-4	0.417	UTR_3_PRIME CG2233
X	5899595	X_5899595_SNP [dm3] X_6005562_SNP [dm6]	G	T	1.236e^-4	0.417	EXON CR44498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6091837	2L_6091837_SNP [dm3] 2L_6091837_SNP [dm6]	G	T	1.238e^-4	0.417	UTR_5_PRIME Kr-h1 UTR_3_PRIME CG45075 INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	509768	2L_509768_SNP [dm3] 2L_509768_SNP [dm6]	T	G	1.239e^-4	0.417	INTRON ush	TF binding site mE1_TFBS_HSA
2R	7524537	2R_7524537_INS [dm3] 2R_11637032_INS [dm6]	T	TG	1.241e^-4	0.417	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13305221	3L_13305221_SNP [dm3] 3L_13312121_SNP [dm6]	T	A	1.260e^-4	0.423	INTERGENIC
X	370896	X_370896_SNP [dm3] X_476863_SNP [dm6]	A	T	1.265e^-4	0.423	UPSTREAM CG13373 & 1 other EXON CR18275	TF binding site BDTNP1_TFBS_dl
2L	1952238	2L_1952238_SNP [dm3] 2L_1952238_SNP [dm6]	T	C	1.270e^-4	0.423	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3150282	2L_3150282_SNP [dm3] 2L_3150282_SNP [dm6]	C	T	1.271e^-4	0.423	INTRON Mad
3R	25847361	3R_25847361_SNP [dm3] 3R_30021639_SNP [dm6]	T	G	1.272e^-4	0.423	DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3L	11383364	3L_11383364_SNP [dm3] 3L_11390264_SNP [dm6]	G	A	1.273e^-4	0.423	INTERGENIC
3R	2862228	3R_2862228_SNP [dm3] 3R_7036506_SNP [dm6]	A	G	1.274e^-4	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20333071	3R_20333071_SNP [dm3] 3R_24507349_SNP [dm6]	G	T	1.284e^-4	0.423	INTERGENIC
3R	22986577	3R_22986577_SNP [dm3] 3R_27160855_SNP [dm6]	T	C	1.289e^-4	0.423	UPSTREAM CG5909 INTERGENIC
3R	22986583	3R_22986583_SNP [dm3] 3R_27160861_SNP [dm6]	T	G	1.289e^-4	0.423	UPSTREAM CG5909 INTERGENIC
3R	22986590	3R_22986590_SNP [dm3] 3R_27160868_SNP [dm6]	A	T	1.289e^-4	0.423	UPSTREAM CG5909 INTERGENIC
3R	22855739	3R_22855739_SNP [dm3] 3R_27030017_SNP [dm6]	A	C	1.293e^-4	0.423	INTRON RYa-R
3R	20222275	3R_20222275_SNP [dm3] 3R_24396553_SNP [dm6]	G	A	1.294e^-4	0.423	UTR_3_PRIME nAChRalpha1
3R	24803775	3R_24803775_SNP [dm3] 3R_28978053_SNP [dm6]	G	A	1.295e^-4	0.423	INTERGENIC
X	379748	X_379748_SNP [dm3] X_485715_SNP [dm6]	T	G	1.295e^-4	0.423	SYNONYMOUS_CODING CG18273
2R	18796896	2R_18796896_SNP [dm3] 2R_22909373_SNP [dm6]	C	A	1.297e^-4	0.423	INTRON nahoda
3L	18093944	3L_18093944_SNP [dm3] 3L_18100844_SNP [dm6]	T	A	1.300e^-4	0.423	INTRON CG13698
2L	14062060	2L_14062060_SNP [dm3] 2L_14062060_SNP [dm6]	C	T	1.301e^-4	0.423	SYNONYMOUS_CODING nAChRalpha5
3R	17972271	3R_17972271_SNP [dm3] 3R_22146549_SNP [dm6]	A	T	1.310e^-4	0.425	INTRON SKIP	TF binding site mE1_TFBS_cad
2R	10550637	2R_10550637_SNP [dm3] 2R_14663132_SNP [dm6]	C	T	1.311e^-4	0.425	INTERGENIC
3R	20309957	3R_20309957_SNP [dm3] 3R_24484235_SNP [dm6]	T	C	1.325e^-4	0.428	INTERGENIC
3R	20309971	3R_20309971_SNP [dm3] 3R_24484249_SNP [dm6]	G	A	1.325e^-4	0.428	INTERGENIC
3R	15399792	3R_15399792_SNP [dm3] 3R_19574070_SNP [dm6]	T	A	1.332e^-4	0.428	INTRON Dys
2L	17060320	2L_17060320_SNP [dm3] 2L_17060320_SNP [dm6]	A	T	1.332e^-4	0.428	INTERGENIC
X	21498669	X_21498669_SNP [dm3] X_21627642_SNP [dm6]	T	C	1.337e^-4	0.428	INTRON DIP1	transposable element FlyBase
3R	19129385	3R_19129385_SNP [dm3] 3R_23303663_SNP [dm6]	C	T	1.344e^-4	0.428	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_inv
2L	13964166	2L_13964166_SNP [dm3] 2L_13964166_SNP [dm6]	A	G	1.355e^-4	0.428	SYNONYMOUS_CODING NimB1 DOWNSTREAM NimA & 1 other	TF binding site mE1_TFBS_chinmo
X	17252077	X_17252077_SNP [dm3] X_17358044_SNP [dm6]	G	A	1.355e^-4	0.428	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5573194	2L_5573194_SNP [dm3] 2L_5573194_SNP [dm6]	C	T	1.356e^-4	0.428	INTERGENIC
2L	15498976	2L_15498976_SNP [dm3] 2L_15498976_SNP [dm6]	G	T	1.356e^-4	0.428	UPSTREAM lace INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19901331	3R_19901331_SNP [dm3] 3R_24075609_SNP [dm6]	A	T	1.364e^-4	0.428	INTRON 4EHP
3R	23688395	3R_23688395_SNP [dm3] 3R_27862673_SNP [dm6]	G	A	1.364e^-4	0.428	INTRON CG34353
3R	23695268	3R_23695268_SNP [dm3] 3R_27869546_SNP [dm6]	A	G	1.364e^-4	0.428	INTRON CG34353
3R	23695848	3R_23695848_SNP [dm3] 3R_27870126_SNP [dm6]	C	A	1.364e^-4	0.428	INTRON CG34353
3R	23695914	3R_23695914_SNP [dm3] 3R_27870192_SNP [dm6]	A	T	1.364e^-4	0.428	INTRON CG34353
3R	23696674	3R_23696674_DEL [dm3] 3R_27870952_DEL [dm6]	AC	A	1.364e^-4	0.428	DOWNSTREAM CG12426 INTRON CG34353
3R	17960477	3R_17960477_SNP [dm3] 3R_22134755_SNP [dm6]	A	T	1.371e^-4	0.428	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21983011	3R_21983011_SNP [dm3] 3R_26157289_SNP [dm6]	T	C	1.371e^-4	0.428	INTERGENIC
3R	9320040	3R_9320040_SNP [dm3] 3R_13494318_SNP [dm6]	G	A	1.374e^-4	0.428	INTERGENIC
X	16881837	X_16881837_SNP [dm3] X_16987804_SNP [dm6]	T	C	1.376e^-4	0.428	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11850635	3L_11850635_SNP [dm3] 3L_11857535_SNP [dm6]	A	C	1.378e^-4	0.428	INTRON CG44837
3R	23685547	3R_23685547_SNP [dm3] 3R_27859825_SNP [dm6]	C	T	1.379e^-4	0.428	INTRON CG34353
3R	23306037	3R_23306037_SNP [dm3] 3R_27480315_SNP [dm6]	T	C	1.379e^-4	0.428	UTR_3_PRIME Cyp6a18
2R	17376703	2R_17376703_SNP [dm3] 2R_21489198_SNP [dm6]	A	C	1.386e^-4	0.428	INTRON Fkbp14
2R	10122584	2R_10122584_SNP [dm3] 2R_14235079_SNP [dm6]	G	C	1.391e^-4	0.428	NON_SYNONYMOUS_CODING Opa1 DOWNSTREAM CG8485	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3R	15736057	3R_15736057_SNP [dm3] 3R_19910335_SNP [dm6]	C	T	1.392e^-4	0.428	UPSTREAM RhoGAP92B & 1 other INTRON RhoGAP92B
3R	15736060	3R_15736060_SNP [dm3] 3R_19910338_SNP [dm6]	A	G	1.392e^-4	0.428	UPSTREAM RhoGAP92B & 1 other INTRON RhoGAP92B
X	17252673	X_17252673_SNP [dm3] X_17358640_SNP [dm6]	C	A	1.395e^-4	0.428	INTERGENIC
X	5372724	X_5372724_SNP [dm3] X_5478691_SNP [dm6]	G	A	1.397e^-4	0.428	UTR_5_PRIME SPR	TF binding site BDTNP1_TFBS_twi
3L	8158193	3L_8158193_SNP [dm3] 3L_8165093_SNP [dm6]	C	T	1.399e^-4	0.428	UPSTREAM CG13675 INTRON CG13675
X	10796917	X_10796917_SNP [dm3] X_10902884_SNP [dm6]	T	C	1.400e^-4	0.428	INTERGENIC	TF binding site mE1_TFBS_cnc
X	16881792	X_16881792_SNP [dm3] X_16987759_SNP [dm6]	G	A	1.408e^-4	0.428	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19003906	2R_19003906_SNP [dm3] 2R_23116383_SNP [dm6]	C	T	1.410e^-4	0.428	INTERGENIC
2R	2126406	2R_2126406_SNP [dm3] 2R_6238901_SNP [dm6]	A	G	1.412e^-4	0.428	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_cad
2L	3975835	2L_3975835_SNP [dm3] 2L_3975835_SNP [dm6]	G	A	1.414e^-4	0.428	INTRON fred
2L	3975956	2L_3975956_SNP [dm3] 2L_3975956_SNP [dm6]	G	T	1.414e^-4	0.428	INTRON fred
3R	11281612	3R_11281612_SNP [dm3] 3R_15455890_SNP [dm6]	G	A	1.414e^-4	0.428	INTRON AdamTS-A
3R	5147518	3R_5147518_SNP [dm3] 3R_9321796_SNP [dm6]	A	T	1.414e^-4	0.428	UTR_5_PRIME HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3581350	3L_3581350_SNP [dm3] 3L_3581350_SNP [dm6]	T	A	1.419e^-4	0.428	INTRON Eip63E
2R	14350577	2R_14350577_SNP [dm3] 2R_18463072_SNP [dm6]	C	T	1.424e^-4	0.428	INTRON CG30116
3L	1345212	3L_1345212_SNP [dm3] 3L_1345212_SNP [dm6]	T	C	1.425e^-4	0.428	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7132734	3L_7132734_SNP [dm3] 3L_7139634_SNP [dm6]	C	T	1.425e^-4	0.428	SYNONYMOUS_CODING melt
3R	23684609	3R_23684609_SNP [dm3] 3R_27858887_SNP [dm6]	C	A	1.428e^-4	0.428	INTRON CG34353
3L	14942268	3L_14942268_SNP [dm3] 3L_14949168_SNP [dm6]	A	G	1.436e^-4	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23697703	3R_23697703_SNP [dm3] 3R_27871981_SNP [dm6]	T	C	1.439e^-4	0.428	INTRON CG34353 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1717684	3R_1717684_SNP [dm3] 3R_5891962_SNP [dm6]	A	T	1.441e^-4	0.428	INTRON CG34113
2L	5198621	2L_5198621_SNP [dm3] 2L_5198621_SNP [dm6]	A	G	1.442e^-4	0.428	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2L	15498961	2L_15498961_SNP [dm3] 2L_15498961_SNP [dm6]	G	T	1.445e^-4	0.428	UPSTREAM lace INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	17970458	3L_17970458_SNP [dm3] 3L_17977358_SNP [dm6]	A	G	1.450e^-4	0.428	INTRON Eip75B
3R	22534277	3R_22534277_SNP [dm3] 3R_26708555_SNP [dm6]	A	G	1.456e^-4	0.428	INTRON amon
3R	22986730	3R_22986730_SNP [dm3] 3R_27161008_SNP [dm6]	G	A	1.456e^-4	0.428	UPSTREAM CG5909 INTERGENIC
2L	20555677	2L_20555677_SNP [dm3] 2L_20555677_SNP [dm6]	G	C	1.461e^-4	0.428	INTERGENIC
2L	3976453	2L_3976453_SNP [dm3] 2L_3976453_SNP [dm6]	A	C	1.463e^-4	0.428	INTRON fred
3R	23688003	3R_23688003_SNP [dm3] 3R_27862281_SNP [dm6]	G	A	1.469e^-4	0.428	INTRON CG34353
2R	16283684	2R_16283684_SNP [dm3] 2R_20396179_SNP [dm6]	G	T	1.473e^-4	0.428	INTERGENIC
3L	15187048	3L_15187048_SNP [dm3] 3L_15193948_SNP [dm6]	C	T	1.473e^-4	0.428	INTERGENIC
3L	22922600	3L_22922600_SNP [dm3] 3L_22929500_SNP [dm6]	C	T	1.474e^-4	0.428	INTERGENIC
3L	13234537	3L_13234537_SNP [dm3] 3L_13241437_SNP [dm6]	T	C	1.474e^-4	0.428	INTRON caps
3L	15907681	3L_15907681_SNP [dm3] 3L_15914581_SNP [dm6]	T	G	1.475e^-4	0.428	INTRON sff
3R	17389630	3R_17389630_SNP [dm3] 3R_21563908_SNP [dm6]	C	A	1.478e^-4	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17389638	3R_17389638_SNP [dm3] 3R_21563916_SNP [dm6]	G	C	1.478e^-4	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	352334	X_352334_SNP [dm3] X_458301_SNP [dm6]	T	C	1.482e^-4	0.428	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17021372	X_17021372_SNP [dm3] X_17127339_SNP [dm6]	C	T	1.484e^-4	0.428	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
2L	13362185	2L_13362185_SNP [dm3] 2L_13362185_SNP [dm6]	C	T	1.490e^-4	0.428	UPSTREAM CG9377 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15207653	3L_15207653_SNP [dm3] 3L_15214553_SNP [dm6]	G	A	1.497e^-4	0.428	INTERGENIC
3R	20933647	3R_20933647_SNP [dm3] 3R_25107925_SNP [dm6]	A	G	1.499e^-4	0.428	SPLICE_SITE_REGION CG34027 SYNONYMOUS_CODING CG34027
2L	19183028	2L_19183028_SNP [dm3] 2L_19183028_SNP [dm6]	G	C	1.500e^-4	0.428	UPSTREAM CG42688 DOWNSTREAM CR17567 & 1 other INTERGENIC
X	19882568	X_19882568_SNP [dm3] X_19988535_SNP [dm6]	C	G	1.501e^-4	0.428	INTERGENIC
X	16430576	X_16430576_INS [dm3] X_16536543_INS [dm6]	A	ACAATA	1.505e^-4	0.428	INTERGENIC
2L	20098003	2L_20098003_SNP [dm3] 2L_20098003_SNP [dm6]	C	A	1.508e^-4	0.428	UTR_5_PRIME Kua UPSTREAM mRpS18B INTRON Kua	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	21927733	X_21927733_SNP [dm3] X_22525897_SNP [dm6]	G	T	1.510e^-4	0.428	INTRON CG17600
3L	6902575	3L_6902575_SNP [dm3] 3L_6909475_SNP [dm6]	C	G	1.513e^-4	0.428	INTERGENIC
3L	6902623	3L_6902623_SNP [dm3] 3L_6909523_SNP [dm6]	C	T	1.513e^-4	0.428	INTERGENIC
X	21923812	X_21923812_SNP [dm3] X_22521976_SNP [dm6]	G	A	1.528e^-4	0.428	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	13680924	2L_13680924_SNP [dm3] 2L_13680924_SNP [dm6]	C	T	1.529e^-4	0.428	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
X	12662236	X_12662236_SNP [dm3] X_12768203_SNP [dm6]	C	G	1.530e^-4	0.428	INTRON CG3812
3R	10894183	3R_10894183_SNP [dm3] 3R_15068461_SNP [dm6]	G	A	1.532e^-4	0.428	INTRON dpr9
2L	12472295	2L_12472295_DEL [dm3] 2L_12472295_DEL [dm6]	CC	C	1.533e^-4	0.428	INTRON bun	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad
3L	9914823	3L_9914823_SNP [dm3] 3L_9921723_SNP [dm6]	T	A	1.543e^-4	0.428	INTRON CG34356
3L	12651575	3L_12651575_DEL [dm3] 3L_12658475_DEL [dm6]	CT	C	1.545e^-4	0.428	UPSTREAM CR44553 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	23801638	3R_23801638_SNP [dm3] 3R_27975916_SNP [dm6]	C	T	1.546e^-4	0.428	INTRON betaTub97EF
3R	16017454	3R_16017454_SNP [dm3] 3R_20191732_SNP [dm6]	C	A	1.548e^-4	0.428	INTERGENIC
3R	15736452	3R_15736452_SNP [dm3] 3R_19910730_SNP [dm6]	G	C	1.552e^-4	0.428	UTR_5_PRIME RhoGAP92B UPSTREAM CR45048 INTRON RhoGAP92B
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	1.572e^-4	0.428	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	1.572e^-4	0.428	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
3R	16440612	3R_16440612_SNP [dm3] 3R_20614890_SNP [dm6]	G	T	1.574e^-4	0.428	NON_SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5996107	3R_5996107_SNP [dm3] 3R_10170385_SNP [dm6]	T	G	1.574e^-4	0.428	UTR_5_PRIME Best1 DOWNSTREAM CG12814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	19406971	2L_19406971_SNP [dm3] 2L_19406971_SNP [dm6]	A	C	1.577e^-4	0.428	INTRON Pax
3L	12851922	3L_12851922_SNP [dm3] 3L_12858822_SNP [dm6]	G	C	1.579e^-4	0.428	NON_SYNONYMOUS_CODING CG32107
3R	24994432	3R_24994432_SNP [dm3] 3R_29168710_SNP [dm6]	G	A	1.581e^-4	0.428	INTRON CG11898
3R	16179904	3R_16179904_SNP [dm3] 3R_20354182_SNP [dm6]	C	A	1.585e^-4	0.428	INTERGENIC
3R	19740116	3R_19740116_SNP [dm3] 3R_23914394_SNP [dm6]	A	T	1.590e^-4	0.428	INTRON sba	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	18613155	X_18613155_SNP [dm3] X_18719122_SNP [dm6]	G	T	1.591e^-4	0.428	INTRON CCKLR-17D1
3L	8207864	3L_8207864_SNP [dm3] 3L_8214764_SNP [dm6]	C	T	1.594e^-4	0.428	UPSTREAM CG8012 INTERGENIC
3L	8207881	3L_8207881_DEL [dm3] 3L_8214781_DEL [dm6]	AAATGGTG	A	1.594e^-4	0.428	UPSTREAM CG8012 INTERGENIC
3L	8207890	3L_8207890_DEL [dm3] 3L_8214790_DEL [dm6]	TAAATATGGAGAAAG...	T	1.594e^-4	0.428	UPSTREAM CG8012 INTERGENIC
3R	17233735	3R_17233735_SNP [dm3] 3R_21408013_SNP [dm6]	G	A	1.603e^-4	0.428	NON_SYNONYMOUS_CODING CheB93a SPLICE_SITE_REGION CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	1062178	2L_1062178_SNP [dm3] 2L_1062178_SNP [dm6]	A	G	1.603e^-4	0.428	UTR_5_PRIME S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22534284	3R_22534284_SNP [dm3] 3R_26708562_SNP [dm6]	T	C	1.603e^-4	0.428	INTRON amon
3R	4074040	3R_4074040_INS [dm3] 3R_8248318_INS [dm6]	C	CAGC	1.605e^-4	0.428	UPSTREAM CG15864 DOWNSTREAM CG33722 & 1 other INTERGENIC
3R	26333342	3R_26333342_SNP [dm3] 3R_30507620_SNP [dm6]	A	T	1.607e^-4	0.428	UPSTREAM CG34041 DOWNSTREAM mir-4908 INTRON CG15539
3R	23969253	3R_23969253_SNP [dm3] 3R_28143531_SNP [dm6]	G	A	1.611e^-4	0.428	INTERGENIC
3L	6751864	3L_6751864_INS [dm3] 3L_6758764_INS [dm6]	A	AGAAGTGGTA	1.612e^-4	0.428	INTRON CG32392
3R	20941684	3R_20941684_SNP [dm3] 3R_25115962_SNP [dm6]	G	A	1.616e^-4	0.428	SYNONYMOUS_CODING CG31108
X	5899598	X_5899598_SNP [dm3] X_6005565_SNP [dm6]	A	G	1.619e^-4	0.428	EXON CR44498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17785255	3R_17785255_SNP [dm3] 3R_21959533_SNP [dm6]	A	G	1.623e^-4	0.428	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1
3R	11281462	3R_11281462_SNP [dm3] 3R_15455740_SNP [dm6]	A	G	1.625e^-4	0.428	INTRON AdamTS-A
2R	18192743	2R_18192743_SNP [dm3] 2R_22305238_SNP [dm6]	A	C	1.625e^-4	0.428	INTRON wdp
2L	19974108	2L_19974108_SNP [dm3] 2L_19974108_SNP [dm6]	G	T	1.633e^-4	0.428	INTRON CG43861
3R	14486461	3R_14486461_SNP [dm3] 3R_18660739_SNP [dm6]	C	T	1.634e^-4	0.428	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	13728671	2L_13728671_SNP [dm3] 2L_13728671_SNP [dm6]	G	T	1.637e^-4	0.428	INTERGENIC
2L	578840	2L_578840_SNP [dm3] 2L_578840_SNP [dm6]	C	T	1.637e^-4	0.428	NON_SYNONYMOUS_CODING Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	583317	2L_583317_SNP [dm3] 2L_583317_SNP [dm6]	C	A	1.637e^-4	0.428	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10691469	2R_10691469_SNP [dm3] 2R_14803964_SNP [dm6]	C	G	1.637e^-4	0.428	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11314998	2R_11314998_SNP [dm3] 2R_15427493_SNP [dm6]	T	G	1.637e^-4	0.428	NON_SYNONYMOUS_CODING CG34188 INTRON CG43729
2R	17974342	2R_17974342_SNP [dm3] 2R_22086837_SNP [dm6]	G	A	1.637e^-4	0.428	SYNONYMOUS_CODING CG13502 INTRON CG13502
2R	6608302	2R_6608302_SNP [dm3] 2R_10720797_SNP [dm6]	A	G	1.637e^-4	0.428	UTR_3_PRIME stan DOWNSTREAM Rab3
3L	13776234	3L_13776234_SNP [dm3] 3L_13783134_SNP [dm6]	G	A	1.637e^-4	0.428	INTRON bru-3
3L	17996733	3L_17996733_SNP [dm3] 3L_18003633_SNP [dm6]	C	A	1.637e^-4	0.428	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B
3L	6714711	3L_6714711_SNP [dm3] 3L_6721611_SNP [dm6]	T	C	1.637e^-4	0.428	INTERGENIC
3R	13939700	3R_13939700_SNP [dm3] 3R_18113978_SNP [dm6]	C	T	1.637e^-4	0.428	INTRON sr
3R	20127276	3R_20127276_SNP [dm3] 3R_24301554_SNP [dm6]	T	A	1.637e^-4	0.428	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20127430	3R_20127430_SNP [dm3] 3R_24301708_SNP [dm6]	T	C	1.637e^-4	0.428	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20127958	3R_20127958_INS [dm3] 3R_24302236_INS [dm6]	G	GGG	1.637e^-4	0.428	INTRON crb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20127965	3R_20127965_SNP [dm3] 3R_24302243_SNP [dm6]	G	A	1.637e^-4	0.428	INTRON crb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20128095	3R_20128095_SNP [dm3] 3R_24302373_SNP [dm6]	C	T	1.637e^-4	0.428	INTRON crb	TF binding site mE1_TFBS_HSA
3R	20128319	3R_20128319_SNP [dm3] 3R_24302597_SNP [dm6]	T	A	1.637e^-4	0.428	INTRON crb
3R	24109996	3R_24109996_SNP [dm3] 3R_28284274_SNP [dm6]	C	A	1.637e^-4	0.428	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	24110047	3R_24110047_SNP [dm3] 3R_28284325_SNP [dm6]	T	G	1.637e^-4	0.428	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	24783469	3R_24783469_SNP [dm3] 3R_28957747_SNP [dm6]	A	G	1.637e^-4	0.428	INTRON CG14521	TF binding site mE1_TFBS_chinmo
3R	25462409	3R_25462409_SNP [dm3] 3R_29636687_SNP [dm6]	G	C	1.637e^-4	0.428	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	25645932	3R_25645932_SNP [dm3] 3R_29820210_SNP [dm6]	A	G	1.637e^-4	0.428	INTRON neo
3R	6015035	3R_6015035_SNP [dm3] 3R_10189313_SNP [dm6]	G	T	1.637e^-4	0.428	INTRON CG12814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6015037	3R_6015037_SNP [dm3] 3R_10189315_SNP [dm6]	T	A	1.637e^-4	0.428	INTRON CG12814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12518903	X_12518903_SNP [dm3] X_12624870_SNP [dm6]	G	C	1.637e^-4	0.428	INTRON CG15728
X	5016570	X_5016570_SNP [dm3] X_5122537_SNP [dm6]	C	G	1.637e^-4	0.428	INTRON rg & 1 other
3R	23684900	3R_23684900_SNP [dm3] 3R_27859178_SNP [dm6]	T	A	1.651e^-4	0.431	INTRON CG34353
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	1.656e^-4	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16596488	2L_16596488_SNP [dm3] 2L_16596488_SNP [dm6]	G	A	1.668e^-4	0.435	INTRON CG42389
3R	16179817	3R_16179817_SNP [dm3] 3R_20354095_SNP [dm6]	A	G	1.679e^-4	0.436	INTERGENIC
3L	14866139	3L_14866139_SNP [dm3] 3L_14873039_SNP [dm6]	C	A	1.680e^-4	0.436	INTRON CG17839
2L	4304942	2L_4304942_SNP [dm3] 2L_4304942_SNP [dm6]	C	T	1.681e^-4	0.436	INTRON tutl
2R	10604453	2R_10604453_SNP [dm3] 2R_14716948_SNP [dm6]	G	A	1.683e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15963163	2R_15963163_SNP [dm3] 2R_20075658_SNP [dm6]	C	T	1.693e^-4	0.438	INTERGENIC
3R	16180060	3R_16180060_SNP [dm3] 3R_20354338_SNP [dm6]	A	T	1.696e^-4	0.438	INTERGENIC
3L	6904895	3L_6904895_SNP [dm3] 3L_6911795_SNP [dm6]	G	A	1.708e^-4	0.441	DOWNSTREAM Prat2 INTERGENIC
X	21927625	X_21927625_SNP [dm3] X_22525789_SNP [dm6]	T	A	1.710e^-4	0.441	INTRON CG17600
X	354353	X_354353_SNP [dm3] X_460320_SNP [dm6]	A	C	1.714e^-4	0.441	UPSTREAM ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20868880	X_20868880_SNP [dm3] X_20997853_SNP [dm6]	G	A	1.716e^-4	0.441	INTERGENIC
3L	2196846	3L_2196846_SNP [dm3] 3L_2196846_SNP [dm6]	A	G	1.717e^-4	0.441	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13979930	2L_13979930_SNP [dm3] 2L_13979930_SNP [dm6]	A	G	1.731e^-4	0.442	UPSTREAM NimC2 DOWNSTREAM Cyp28a5 INTERGENIC
2L	14607324	2L_14607324_SNP [dm3] 2L_14607324_SNP [dm6]	A	T	1.733e^-4	0.442	INTRON osp
X	3966481	X_3966481_SNP [dm3] X_4072448_SNP [dm6]	T	C	1.734e^-4	0.442	INTERGENIC
X	3966493	X_3966493_DEL [dm3] X_4072460_DEL [dm6]	GTG	G	1.734e^-4	0.442	INTERGENIC
3R	22986582	3R_22986582_SNP [dm3] 3R_27160860_SNP [dm6]	G	A	1.738e^-4	0.443	UPSTREAM CG5909 INTERGENIC
2L	12696399	2L_12696399_SNP [dm3] 2L_12696399_SNP [dm6]	C	A	1.746e^-4	0.444	DOWNSTREAM CG5781 INTRON PICK1
3R	17335761	3R_17335761_SNP [dm3] 3R_21510039_SNP [dm6]	T	C	1.767e^-4	0.449	INTRON C15	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9866586	3L_9866586_SNP [dm3] 3L_9873486_SNP [dm6]	G	T	1.774e^-4	0.45	INTERGENIC
3L	1646742	3L_1646742_SNP [dm3] 3L_1646742_SNP [dm6]	C	T	1.777e^-4	0.45	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17670240	2L_17670240_SNP [dm3] 2L_17670240_SNP [dm6]	T	C	1.781e^-4	0.45	INTRON CadN
3L	7700470	3L_7700470_INS [dm3] 3L_7707370_INS [dm6]	G	GG	1.781e^-4	0.45	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2L	14861467	2L_14861467_SNP [dm3] 2L_14861467_SNP [dm6]	C	T	1.806e^-4	0.455	INTERGENIC
3R	25718469	3R_25718469_SNP [dm3] 3R_29892747_SNP [dm6]	C	T	1.812e^-4	0.455	INTRON CG31038
2L	10874275	2L_10874275_SNP [dm3] 2L_10874275_SNP [dm6]	G	A	1.818e^-4	0.455	INTERGENIC
3L	9082309	3L_9082309_SNP [dm3] 3L_9089209_SNP [dm6]	A	G	1.823e^-4	0.455	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
2L	13979992	2L_13979992_SNP [dm3] 2L_13979992_SNP [dm6]	A	T	1.825e^-4	0.455	UPSTREAM NimC2 DOWNSTREAM Cyp28a5 INTERGENIC
3R	23695413	3R_23695413_SNP [dm3] 3R_27869691_SNP [dm6]	T	C	1.828e^-4	0.455	INTRON CG34353
X	8271818	X_8271818_SNP [dm3] X_8377785_SNP [dm6]	C	A	1.829e^-4	0.455	INTERGENIC
2R	6608277	2R_6608277_SNP [dm3] 2R_10720772_SNP [dm6]	T	C	1.829e^-4	0.455	UTR_3_PRIME stan DOWNSTREAM Rab3
3R	26911191	3R_26911191_SNP [dm3] 3R_31085469_SNP [dm6]	C	G	1.831e^-4	0.455	INTERGENIC
2R	10317990	2R_10317990_SNP [dm3] 2R_14430485_SNP [dm6]	C	A	1.834e^-4	0.455	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25569204	3R_25569204_SNP [dm3] 3R_29743482_SNP [dm6]	A	G	1.834e^-4	0.455	SYNONYMOUS_CODING CG7609
3R	25569208	3R_25569208_SNP [dm3] 3R_29743486_SNP [dm6]	C	T	1.834e^-4	0.455	SYNONYMOUS_CODING CG7609
3L	14764390	3L_14764390_SNP [dm3] 3L_14771290_SNP [dm6]	C	A	1.835e^-4	0.455	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad
3L	18862256	3L_18862256_SNP [dm3] 3L_18869156_SNP [dm6]	G	T	1.836e^-4	0.455	UTR_3_PRIME Dysb UPSTREAM CG6852 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	1248941	3R_1248941_SNP [dm3] 3R_5423219_SNP [dm6]	A	G	1.841e^-4	0.455	INTRON CG14669
2R	8524160	2R_8524160_SNP [dm3] 2R_12636655_SNP [dm6]	G	A	1.844e^-4	0.455	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11103366	3L_11103366_SNP [dm3] 3L_11110266_SNP [dm6]	C	T	1.852e^-4	0.455	SYNONYMOUS_CODING CG7638 UPSTREAM CG34012	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9902171	3L_9902171_SNP [dm3] 3L_9909071_SNP [dm6]	T	A	1.854e^-4	0.455	INTRON CG34356
X	17254051	X_17254051_DEL [dm3] X_17360018_DEL [dm6]	CGTC	C	1.854e^-4	0.455	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17254550	X_17254550_SNP [dm3] X_17360517_SNP [dm6]	C	T	1.854e^-4	0.455	INTERGENIC
X	17254629	X_17254629_INS [dm3] X_17360596_INS [dm6]	G	GAG	1.854e^-4	0.455	INTERGENIC
X	18220910	X_18220910_SNP [dm3] X_18326877_SNP [dm6]	A	G	1.854e^-4	0.455	INTRON CG6123
3R	24773227	3R_24773227_SNP [dm3] 3R_28947505_SNP [dm6]	G	A	1.866e^-4	0.455	INTRON CG14521
3R	19159101	3R_19159101_SNP [dm3] 3R_23333379_SNP [dm6]	A	G	1.866e^-4	0.455	INTRON pnt
2L	8068668	2L_8068668_SNP [dm3] 2L_8068668_SNP [dm6]	G	A	1.866e^-4	0.455	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13208108	2R_13208108_SNP [dm3] 2R_17320603_SNP [dm6]	T	C	1.875e^-4	0.455	INTRON mbl
3R	23022381	3R_23022381_SNP [dm3] 3R_27196659_SNP [dm6]	A	T	1.877e^-4	0.455	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3414812	2L_3414812_SNP [dm3] 2L_3414812_SNP [dm6]	A	G	1.880e^-4	0.455	INTRON pgant2
X	21923959	X_21923959_SNP [dm3] X_22522123_SNP [dm6]	T	A	1.880e^-4	0.455	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3599246	2L_3599246_SNP [dm3] 2L_3599246_SNP [dm6]	T	C	1.882e^-4	0.455	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22356719	3R_22356719_SNP [dm3] 3R_26530997_SNP [dm6]	G	A	1.883e^-4	0.455	INTRON plum
X	352083	X_352083_DEL [dm3] X_458050_DEL [dm6]	AA	A	1.884e^-4	0.455	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10311627	2R_10311627_SNP [dm3] 2R_14424122_SNP [dm6]	C	T	1.888e^-4	0.455	UTR_3_PRIME CG17386
3R	24695022	3R_24695022_SNP [dm3] 3R_28869300_SNP [dm6]	C	T	1.889e^-4	0.455	SYNONYMOUS_CODING spg UTR_3_PRIME spg	TF binding site mE1_TFBS_chinmo
3R	20350714	3R_20350714_SNP [dm3] 3R_24524992_SNP [dm6]	T	C	1.891e^-4	0.455	NON_SYNONYMOUS_CODING CG13618
3R	24654300	3R_24654300_SNP [dm3] 3R_28828578_SNP [dm6]	A	G	1.892e^-4	0.455	INTRON WASp
3R	17009014	3R_17009014_SNP [dm3] 3R_21183292_SNP [dm6]	T	A	1.892e^-4	0.455	INTRON SNF4Agamma
2R	13644266	2R_13644266_SNP [dm3] 2R_17756761_SNP [dm6]	T	C	1.894e^-4	0.455	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18093926	3L_18093926_SNP [dm3] 3L_18100826_SNP [dm6]	G	A	1.895e^-4	0.455	INTRON CG13698
3R	23344850	3R_23344850_SNP [dm3] 3R_27519128_SNP [dm6]	T	C	1.901e^-4	0.455	INTERGENIC
2R	16684867	2R_16684867_INS [dm3] 2R_20797362_INS [dm6]	A	AA	1.916e^-4	0.457	INTERGENIC	TF binding site mE1_TFBS_cad
X	9042834	X_9042834_SNP [dm3] X_9148801_SNP [dm6]	G	A	1.925e^-4	0.457	NON_SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25554585	3R_25554585_SNP [dm3] 3R_29728863_SNP [dm6]	T	C	1.927e^-4	0.457	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25554594	3R_25554594_SNP [dm3] 3R_29728872_SNP [dm6]	A	C	1.927e^-4	0.457	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25554603	3R_25554603_SNP [dm3] 3R_29728881_SNP [dm6]	G	A	1.927e^-4	0.457	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21199999	3L_21199999_SNP [dm3] 3L_21206899_SNP [dm6]	G	A	1.929e^-4	0.457	INTRON CG10512	TF binding site mE1_TFBS_cad
2L	14062495	2L_14062495_INS [dm3] 2L_14062495_INS [dm6]	A	AAAAATA	1.930e^-4	0.457
2L	14062497	2L_14062497_SNP [dm3] 2L_14062497_SNP [dm6]	G	C	1.930e^-4	0.457	NON_SYNONYMOUS_CODING nAChRalpha5
3L	495890	3L_495890_SNP [dm3] 3L_495890_SNP [dm6]	G	A	1.931e^-4	0.457	INTRON klar
2L	3414813	2L_3414813_SNP [dm3] 2L_3414813_SNP [dm6]	A	T	1.931e^-4	0.457	INTRON pgant2
2R	6653448	2R_6653448_SNP [dm3] 2R_10765943_SNP [dm6]	G	A	1.939e^-4	0.458	INTRON CG33144
X	4882299	X_4882299_SNP [dm3] X_4988266_SNP [dm6]	T	G	1.948e^-4	0.46	INTRON CR44833
X	18167291	X_18167291_DEL [dm3] X_18273258_DEL [dm6]	AT	A	1.970e^-4	0.464	INTERGENIC
2R	10290937	2R_10290937_SNP [dm3] 2R_14403432_SNP [dm6]	G	C	1.980e^-4	0.465	INTERGENIC
3L	9199316	3L_9199316_SNP [dm3] 3L_9206216_SNP [dm6]	C	T	1.983e^-4	0.465	INTRON Slc45-1
3L	9199319	3L_9199319_DEL [dm3] 3L_9206219_DEL [dm6]	CGC	C	1.983e^-4	0.465	INTRON Slc45-1
3R	17974966	3R_17974966_SNP [dm3] 3R_22149244_SNP [dm6]	G	T	1.985e^-4	0.465	INTRON SKIP
3L	20733308	3L_20733308_SNP [dm3] 3L_20740208_SNP [dm6]	A	T	1.991e^-4	0.466	UPSTREAM Gr77a INTRON CG13252
X	10796934	X_10796934_SNP [dm3] X_10902901_SNP [dm6]	A	C	2.007e^-4	0.469	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	2121020	2R_2121020_SNP [dm3] 2R_6233515_SNP [dm6]	G	A	2.007e^-4	0.469	UTR_5_PRIME bin3	TF binding site mE1_TFBS_inv
2L	20097711	2L_20097711_SNP [dm3] 2L_20097711_SNP [dm6]	A	G	2.021e^-4	0.47	UPSTREAM Kua & 1 other INTRON Kua	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20098083	2L_20098083_DEL [dm3] 2L_20098083_DEL [dm6]	AAA	A	2.021e^-4	0.47	UTR_5_PRIME Kua UPSTREAM mRpS18B INTRON Kua	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	6588062	2R_6588062_SNP [dm3] 2R_10700557_SNP [dm6]	T	A	2.022e^-4	0.47	INTRON stan
3R	19170680	3R_19170680_SNP [dm3] 3R_23344958_SNP [dm6]	C	T	2.023e^-4	0.47	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	16176742	3R_16176742_SNP [dm3] 3R_20351020_SNP [dm6]	C	A	2.024e^-4	0.47	INTERGENIC
3R	26035367	3R_26035367_SNP [dm3] 3R_30209645_SNP [dm6]	A	T	2.031e^-4	0.471	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	25622957	3R_25622957_SNP [dm3] 3R_29797235_SNP [dm6]	G	A	2.039e^-4	0.471	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25622958	3R_25622958_SNP [dm3] 3R_29797236_SNP [dm6]	A	C	2.039e^-4	0.471	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18104756	X_18104756_SNP [dm3] X_18210723_SNP [dm6]	G	A	2.041e^-4	0.471	UTR_3_PRIME Him DOWNSTREAM CG33639
X	16881796	X_16881796_SNP [dm3] X_16987763_SNP [dm6]	G	A	2.045e^-4	0.471	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16881791	X_16881791_SNP [dm3] X_16987758_SNP [dm6]	A	G	2.046e^-4	0.471	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15253111	2L_15253111_SNP [dm3] 2L_15253111_SNP [dm6]	T	A	2.051e^-4	0.472	UTR_3_PRIME dao INTRON dao
2R	19431791	2R_19431791_SNP [dm3] 2R_23544268_SNP [dm6]	G	C	2.065e^-4	0.474	SYNONYMOUS_CODING CG30185 DOWNSTREAM wmd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9329536	3L_9329536_SNP [dm3] 3L_9336436_SNP [dm6]	T	G	2.069e^-4	0.474	INTRON PGRP-LA
3R	13569657	3R_13569657_SNP [dm3] 3R_17743935_SNP [dm6]	G	A	2.076e^-4	0.474	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2120207	2R_2120207_SNP [dm3] 2R_6232702_SNP [dm6]	T	A	2.083e^-4	0.474	INTRON bin3
3R	3875539	3R_3875539_SNP [dm3] 3R_8049817_SNP [dm6]	T	A	2.083e^-4	0.474	DOWNSTREAM CG43618 INTRON CG43060 & 1 other
3R	4074960	3R_4074960_SNP [dm3] 3R_8249238_SNP [dm6]	T	C	2.085e^-4	0.474	NON_SYNONYMOUS_CODING CG15864
2R	2124843	2R_2124843_SNP [dm3] 2R_6237338_SNP [dm6]	C	T	2.087e^-4	0.474	SPLICE_SITE_REGION bin3 INTRON bin3	TF binding site mE1_TFBS_sbb
2R	10149806	2R_10149806_SNP [dm3] 2R_14262301_SNP [dm6]	G	A	2.088e^-4	0.474	INTRON CG8547
3L	19955616	3L_19955616_SNP [dm3] 3L_19962516_SNP [dm6]	C	A	2.090e^-4	0.474	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	371356	X_371356_SNP [dm3] X_477323_SNP [dm6]	T	C	2.092e^-4	0.474	UPSTREAM CG13373 & 1 other INTRON CG13373 EXON CR18275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	378499	X_378499_SNP [dm3] X_484466_SNP [dm6]	T	C	2.092e^-4	0.474	SYNONYMOUS_CODING CG18273	TF binding site mE1_TFBS_sens
2L	1043419	2L_1043419_SNP [dm3] 2L_1043419_SNP [dm6]	T	C	2.093e^-4	0.474	UPSTREAM IA-2 INTRON IA-2
3R	23162460	3R_23162460_SNP [dm3] 3R_27336738_SNP [dm6]	G	C	2.095e^-4	0.474	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14704092	2R_14704092_SNP [dm3] 2R_18816587_SNP [dm6]	C	T	2.099e^-4	0.474	UPSTREAM CG15096 DOWNSTREAM CR43418 INTERGENIC
3R	3249570	3R_3249570_SNP [dm3] 3R_7423848_SNP [dm6]	G	T	2.100e^-4	0.474	DOWNSTREAM wa-cup INTERGENIC
3L	18808485	3L_18808485_SNP [dm3] 3L_18815385_SNP [dm6]	T	C	2.107e^-4	0.474	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26911190	3R_26911190_SNP [dm3] 3R_31085468_SNP [dm6]	G	T	2.113e^-4	0.474	INTERGENIC
3R	21180263	3R_21180263_SNP [dm3] 3R_25354541_SNP [dm6]	C	T	2.116e^-4	0.474	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	17253271	X_17253271_SNP [dm3] X_17359238_SNP [dm6]	T	G	2.127e^-4	0.474	INTERGENIC
X	19896158	X_19896158_SNP [dm3] X_20002125_SNP [dm6]	G	T	2.127e^-4	0.474	UPSTREAM CG17003 INTERGENIC
3R	23408980	3R_23408980_SNP [dm3] 3R_27583258_SNP [dm6]	T	C	2.129e^-4	0.474	SYNONYMOUS_CODING raps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7325360	3L_7325360_SNP [dm3] 3L_7332260_SNP [dm6]	A	G	2.130e^-4	0.474	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20757841	X_20757841_DEL [dm3] X_20886814_DEL [dm6]	TT	T	2.130e^-4	0.474	INTRON shakB
3R	14524144	3R_14524144_SNP [dm3] 3R_18698422_SNP [dm6]	G	A	2.136e^-4	0.474	INTERGENIC
3R	19170266	3R_19170266_SNP [dm3] 3R_23344544_SNP [dm6]	A	G	2.137e^-4	0.474	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9234401	3R_9234401_SNP [dm3] 3R_13408679_SNP [dm6]	C	A	2.138e^-4	0.474	DOWNSTREAM yellow-e INTERGENIC
2L	9941162	2L_9941162_SNP [dm3] 2L_9941162_SNP [dm6]	G	T	2.139e^-4	0.474	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619
2R	5392865	2R_5392865_SNP [dm3] 2R_9505360_SNP [dm6]	A	G	2.139e^-4	0.474	UTR_5_PRIME brp
X	17297834	X_17297834_SNP [dm3] X_17403801_SNP [dm6]	G	T	2.140e^-4	0.474	DOWNSTREAM B-H1 INTERGENIC
X	8054337	X_8054337_SNP [dm3] X_8160304_SNP [dm6]	C	T	2.141e^-4	0.474	DOWNSTREAM GIIIspla2 INTRON CG15337	TF binding site mE1_TFBS_chinmo
3L	22536112	3L_22536112_SNP [dm3] 3L_22543012_SNP [dm6]	T	A	2.145e^-4	0.474	INTERGENIC
3R	13239379	3R_13239379_SNP [dm3] 3R_17413657_SNP [dm6]	T	G	2.145e^-4	0.474	UPSTREAM CG42822 DOWNSTREAM CG5863 & 1 other INTERGENIC
3R	16020488	3R_16020488_SNP [dm3] 3R_20194766_SNP [dm6]	C	T	2.151e^-4	0.475	INTERGENIC
X	422021	X_422021_SNP [dm3] X_527988_SNP [dm6]	T	C	2.155e^-4	0.476	UTR_3_PRIME arg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19961434	2L_19961434_SNP [dm3] 2L_19961434_SNP [dm6]	G	A	2.179e^-4	0.476	UTR_3_PRIME CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
3L	11861494	3L_11861494_SNP [dm3] 3L_11868394_SNP [dm6]	C	G	2.180e^-4	0.476	INTRON CG44837	TF binding site BDTNP1_TFBS_twi
3L	11861498	3L_11861498_SNP [dm3] 3L_11868398_SNP [dm6]	G	A	2.180e^-4	0.476	INTRON CG44837	TF binding site BDTNP1_TFBS_twi
3L	11861509	3L_11861509_SNP [dm3] 3L_11868409_SNP [dm6]	G	C	2.180e^-4	0.476	INTRON CG44837	TF binding site BDTNP1_TFBS_twi
3L	13171573	3L_13171573_SNP [dm3] 3L_13178473_SNP [dm6]	A	T	2.180e^-4	0.476	INTERGENIC
3L	13171574	3L_13171574_SNP [dm3] 3L_13178474_SNP [dm6]	A	T	2.180e^-4	0.476	INTERGENIC
3R	25465610	3R_25465610_SNP [dm3] 3R_29639888_SNP [dm6]	G	C	2.180e^-4	0.476	INTRON Dop1R2
3R	9320114	3R_9320114_SNP [dm3] 3R_13494392_SNP [dm6]	G	C	2.180e^-4	0.476	INTERGENIC
X	21917466	X_21917466_SNP [dm3] X_22515630_SNP [dm6]	A	G	2.181e^-4	0.476	UPSTREAM CR43962 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10609049	3L_10609049_SNP [dm3] 3L_10615949_SNP [dm6]	G	A	2.182e^-4	0.476	INTERGENIC
3R	23685825	3R_23685825_SNP [dm3] 3R_27860103_SNP [dm6]	C	T	2.184e^-4	0.476	INTRON CG34353
X	17297831	X_17297831_SNP [dm3] X_17403798_SNP [dm6]	G	T	2.194e^-4	0.476	DOWNSTREAM B-H1 INTERGENIC
2R	13925109	2R_13925109_SNP [dm3] 2R_18037604_SNP [dm6]	A	G	2.201e^-4	0.476	INTERGENIC
3R	25549409	3R_25549409_SNP [dm3] 3R_29723687_SNP [dm6]	C	T	2.201e^-4	0.476	DOWNSTREAM CG34296 & 1 other INTRON Pcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26258254	3R_26258254_SNP [dm3] 3R_30432532_SNP [dm6]	C	T	2.201e^-4	0.476	SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2700405	3R_2700405_SNP [dm3] 3R_6874683_SNP [dm6]	G	T	2.201e^-4	0.476	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	471166	X_471166_SNP [dm3] X_577133_SNP [dm6]	G	C	2.201e^-4	0.476	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8875823	2L_8875823_SNP [dm3] 2L_8875823_SNP [dm6]	C	T	2.205e^-4	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7991481	3L_7991481_SNP [dm3] 3L_7998381_SNP [dm6]	T	C	2.213e^-4	0.477	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	17920066	3R_17920066_DEL [dm3] 3R_22094344_DEL [dm6]	GTAATG	T	2.218e^-4	0.477	INTRON CG5778
3L	1870442	3L_1870442_SNP [dm3] 3L_1870442_SNP [dm6]	C	T	2.218e^-4	0.477	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3206182	X_3206182_INS [dm3] X_3312149_INS [dm6]	T	TT	2.222e^-4	0.477	INTRON dnc
2L	2811892	2L_2811892_SNP [dm3] 2L_2811892_SNP [dm6]	T	C	2.222e^-4	0.477	UTR_3_PRIME daw UPSTREAM CG2964	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	1714663	X_1714663_SNP [dm3] X_1820630_SNP [dm6]	G	A	2.227e^-4	0.477	UPSTREAM CG14810 DOWNSTREAM CG14811 INTRON CG42666
3R	23022406	3R_23022406_SNP [dm3] 3R_27196684_SNP [dm6]	T	C	2.227e^-4	0.477	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25384334	3R_25384334_SNP [dm3] 3R_29558612_SNP [dm6]	G	A	2.228e^-4	0.477	INTRON Dr	TF binding site mE1_TFBS_inv
X	4279303	X_4279303_SNP [dm3] X_4385270_SNP [dm6]	A	G	2.241e^-4	0.477	INTERGENIC	regulatory region REDfly_CRMs
2R	17115948	2R_17115948_SNP [dm3] 2R_21228443_SNP [dm6]	C	T	2.244e^-4	0.477	INTRON ASPP
X	18613017	X_18613017_SNP [dm3] X_18718984_SNP [dm6]	A	T	2.246e^-4	0.477	INTRON CCKLR-17D1
X	372935	X_372935_SNP [dm3] X_478902_SNP [dm6]	T	G	2.246e^-4	0.477	UPSTREAM CG32817 DOWNSTREAM CG13373 & 1 other EXON CR18275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	384272	X_384272_SNP [dm3] X_490239_SNP [dm6]	A	T	2.246e^-4	0.477	DOWNSTREAM CG17896 INTRON CG3156
X	391621	X_391621_SNP [dm3] X_497588_SNP [dm6]	G	T	2.246e^-4	0.477	UPSTREAM CR44891 DOWNSTREAM CR44892 INTRON svr	TF binding site mE1_TFBS_sens
2L	8068557	2L_8068557_SNP [dm3] 2L_8068557_SNP [dm6]	A	G	2.251e^-4	0.477	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA
2L	8068707	2L_8068707_SNP [dm3] 2L_8068707_SNP [dm6]	T	C	2.251e^-4	0.477	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21178121	3R_21178121_SNP [dm3] 3R_25352399_SNP [dm6]	T	C	2.255e^-4	0.477	DOWNSTREAM Fur1 INTRON Fur1
2R	8906592	2R_8906592_SNP [dm3] 2R_13019087_SNP [dm6]	G	A	2.256e^-4	0.477	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6298128	3R_6298128_DEL [dm3] 3R_10472406_DEL [dm6]	TT	T	2.258e^-4	0.477	INTERGENIC
2R	7526935	2R_7526935_SNP [dm3] 2R_11639430_SNP [dm6]	C	T	2.262e^-4	0.478	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2402524	X_2402524_INS [dm3] X_2508491_INS [dm6]	T	TATGTACGTTTT...	2.265e^-4	0.478	INTRON trol
2R	10317949	2R_10317949_SNP [dm3] 2R_14430444_SNP [dm6]	A	C	2.270e^-4	0.478	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20417344	X_20417344_SNP [dm3] X_20546317_SNP [dm6]	A	G	2.270e^-4	0.478	INTRON RunxB
2L	1245977	2L_1245977_SNP [dm3] 2L_1245977_SNP [dm6]	G	A	2.288e^-4	0.478	INTERGENIC
3R	25109133	3R_25109133_SNP [dm3] 3R_29283411_SNP [dm6]	C	T	2.290e^-4	0.478	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	12009277	2R_12009277_SNP [dm3] 2R_16121772_SNP [dm6]	T	C	2.296e^-4	0.478	SYNONYMOUS_CODING Jhe
X	8241526	X_8241526_SNP [dm3] X_8347493_SNP [dm6]	G	A	2.297e^-4	0.478	INTRON nAChRalpha3
3R	17008968	3R_17008968_SNP [dm3] 3R_21183246_SNP [dm6]	A	T	2.301e^-4	0.478	INTRON SNF4Agamma
3R	17008969	3R_17008969_SNP [dm3] 3R_21183247_SNP [dm6]	C	T	2.301e^-4	0.478	INTRON SNF4Agamma
2R	5683611	2R_5683611_DEL [dm3] 2R_9796106_DEL [dm6]	TT	T	2.302e^-4	0.478	INTRON CG1688 & 1 other
3L	11466307	3L_11466307_SNP [dm3] 3L_11473207_SNP [dm6]	A	T	2.304e^-4	0.478	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	473955	3L_473955_SNP [dm3] 3L_473955_SNP [dm6]	A	C	2.304e^-4	0.478	INTRON klar
3L	473960	3L_473960_SNP [dm3] 3L_473960_SNP [dm6]	G	C	2.304e^-4	0.478	INTRON klar
3L	22696349	3L_22696349_SNP [dm3] 3L_22703249_SNP [dm6]	A	G	2.309e^-4	0.478	INTERGENIC
3L	6895785	3L_6895785_SNP [dm3] 3L_6902685_SNP [dm6]	T	C	2.309e^-4	0.478	INTERGENIC
3L	6895789	3L_6895789_SNP [dm3] 3L_6902689_SNP [dm6]	T	A	2.309e^-4	0.478	INTERGENIC
3L	6895795	3L_6895795_SNP [dm3] 3L_6902695_SNP [dm6]	G	A	2.309e^-4	0.478	INTERGENIC
2L	11879047	2L_11879047_SNP [dm3] 2L_11879047_SNP [dm6]	T	C	2.320e^-4	0.48	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3491479	3R_3491479_SNP [dm3] 3R_7665757_SNP [dm6]	C	T	2.329e^-4	0.481	INTRON Nlg1
3R	25521510	3R_25521510_SNP [dm3] 3R_29695788_SNP [dm6]	G	A	2.338e^-4	0.482	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3974864	2L_3974864_SNP [dm3] 2L_3974864_SNP [dm6]	G	T	2.339e^-4	0.482	INTRON fred
2L	20106572	2L_20106572_SNP [dm3] 2L_20106572_SNP [dm6]	T	G	2.341e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4675264	3R_4675264_SNP [dm3] 3R_8849542_SNP [dm6]	G	A	2.342e^-4	0.482	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14208067	3L_14208067_SNP [dm3] 3L_14214967_SNP [dm6]	T	C	2.354e^-4	0.483	INTRON nuf	TF binding site mE1_TFBS_inv
3L	9707658	3L_9707658_SNP [dm3] 3L_9714558_SNP [dm6]	G	A	2.355e^-4	0.483	NON_SYNONYMOUS_CODING vsg UPSTREAM SH3PX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13672904	3R_13672904_SNP [dm3] 3R_17847182_SNP [dm6]	G	T	2.361e^-4	0.483	INTRON tinc
3R	22534278	3R_22534278_SNP [dm3] 3R_26708556_SNP [dm6]	C	T	2.364e^-4	0.483	INTRON amon
3R	23306056	3R_23306056_SNP [dm3] 3R_27480334_SNP [dm6]	C	A	2.367e^-4	0.483	UTR_3_PRIME Cyp6a18
2R	16524063	2R_16524063_SNP [dm3] 2R_20636558_SNP [dm6]	T	C	2.380e^-4	0.483	SYNONYMOUS_CODING CG13436 INTRON rig
3R	15212603	3R_15212603_SNP [dm3] 3R_19386881_SNP [dm6]	C	T	2.380e^-4	0.483	SPLICE_SITE_REGION CR34285 UPSTREAM CG3734 INTRON Ino80 & 1 other
3R	23297069	3R_23297069_SNP [dm3] 3R_27471347_SNP [dm6]	T	C	2.380e^-4	0.483	INTERGENIC
X	18166624	X_18166624_SNP [dm3] X_18272591_SNP [dm6]	G	A	2.380e^-4	0.483	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13527826	X_13527826_SNP [dm3] X_13633793_SNP [dm6]	C	T	2.382e^-4	0.483	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	890215	2L_890215_DEL [dm3] 2L_890215_DEL [dm6]	CCC	C	2.386e^-4	0.483	INTERGENIC
3L	884521	3L_884521_SNP [dm3] 3L_884521_SNP [dm6]	A	G	2.389e^-4	0.483	INTRON CG32479
2L	17421990	2L_17421990_SNP [dm3] 2L_17421990_SNP [dm6]	C	A	2.392e^-4	0.483	INTRON Dif
3R	19958356	3R_19958356_SNP [dm3] 3R_24132634_SNP [dm6]	G	A	2.396e^-4	0.483	SYNONYMOUS_CODING Tsc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16880835	X_16880835_SNP [dm3] X_16986802_SNP [dm6]	G	A	2.405e^-4	0.483	INTRON CG45002
3R	16561852	3R_16561852_SNP [dm3] 3R_20736130_SNP [dm6]	C	T	2.408e^-4	0.483	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16561894	3R_16561894_SNP [dm3] 3R_20736172_SNP [dm6]	A	C	2.408e^-4	0.483	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16561903	3R_16561903_SNP [dm3] 3R_20736181_SNP [dm6]	A	G	2.408e^-4	0.483	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16562031	3R_16562031_SNP [dm3] 3R_20736309_SNP [dm6]	C	A	2.408e^-4	0.483	DOWNSTREAM CR42786 & 1 other INTRON cdc2c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16562035	3R_16562035_SNP [dm3] 3R_20736313_SNP [dm6]	A	C	2.408e^-4	0.483	DOWNSTREAM CR42786 & 1 other INTRON cdc2c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	15308670	3R_15308670_SNP [dm3] 3R_19482948_SNP [dm6]	T	C	2.410e^-4	0.483	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	355822	X_355822_SNP [dm3] X_461789_SNP [dm6]	A	G	2.412e^-4	0.483	SYNONYMOUS_CODING ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	1042492	2L_1042492_SNP [dm3] 2L_1042492_SNP [dm6]	C	T	2.414e^-4	0.483	INTRON IA-2
3L	14832878	3L_14832878_SNP [dm3] 3L_14839778_SNP [dm6]	G	T	2.415e^-4	0.483	INTRON CG17839
X	17119044	X_17119044_SNP [dm3] X_17225011_SNP [dm6]	A	G	2.419e^-4	0.483	DOWNSTREAM CG10598 INTERGENIC
2L	882876	2L_882876_SNP [dm3] 2L_882876_SNP [dm6]	G	A	2.420e^-4	0.483	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14443842	3R_14443842_SNP [dm3] 3R_18618120_SNP [dm6]	C	T	2.422e^-4	0.483	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
X	5906026	X_5906026_SNP [dm3] X_6011993_SNP [dm6]	A	G	2.424e^-4	0.483	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18036281	3L_18036281_SNP [dm3] 3L_18043181_SNP [dm6]	A	T	2.427e^-4	0.483	SPLICE_SITE_REGION CG42393 INTRON Eip75B & 1 other
X	9444832	X_9444832_SNP [dm3] X_9550799_SNP [dm6]	G	T	2.429e^-4	0.483	UTR_5_PRIME CG32700 DOWNSTREAM l_1_G0320
X	21919419	X_21919419_SNP [dm3] X_22517583_SNP [dm6]	G	A	2.435e^-4	0.484	INTRON CG17600
2R	9083823	2R_9083823_SNP [dm3] 2R_13196318_SNP [dm6]	C	T	2.437e^-4	0.484	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_sens
3L	19793029	3L_19793029_SNP [dm3] 3L_19799929_SNP [dm6]	A	T	2.437e^-4	0.484	NON_SYNONYMOUS_CODING CG14102 DOWNSTREAM HLH106 INTRON Ir76a
3R	15735546	3R_15735546_SNP [dm3] 3R_19909824_SNP [dm6]	C	A	2.446e^-4	0.485	UPSTREAM RhoGAP92B INTRON RhoGAP92B EXON CR45048
3R	11171424	3R_11171424_SNP [dm3] 3R_15345702_SNP [dm6]	G	A	2.451e^-4	0.485	UPSTREAM CG31301 INTRON Surf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23408286	3R_23408286_INS [dm3] 3R_27582564_INS [dm6]	A	AATATAATCTAGCAA...	2.454e^-4	0.485	UPSTREAM raps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26170013	3R_26170013_SNP [dm3] 3R_30344291_SNP [dm6]	A	G	2.457e^-4	0.485	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5032110	3R_5032110_SNP [dm3] 3R_9206388_SNP [dm6]	T	A	2.476e^-4	0.489	INTRON pum
2R	18462646	2R_18462646_SNP [dm3] 2R_22575141_SNP [dm6]	A	T	2.481e^-4	0.489	INTRON dnr1
2L	19976513	2L_19976513_SNP [dm3] 2L_19976513_SNP [dm6]	G	T	2.489e^-4	0.489	INTRON CG43861
2R	13644300	2R_13644300_SNP [dm3] 2R_17756795_SNP [dm6]	C	T	2.490e^-4	0.489	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13644302	2R_13644302_SNP [dm3] 2R_17756797_SNP [dm6]	A	C	2.490e^-4	0.489	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19736625	3R_19736625_SNP [dm3] 3R_23910903_SNP [dm6]	C	T	2.503e^-4	0.491	INTRON sba
3L	14219511	3L_14219511_INS [dm3] 3L_14226411_INS [dm6]	G	GAG	2.505e^-4	0.491	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	23686937	3R_23686937_SNP [dm3] 3R_27861215_SNP [dm6]	C	A	2.516e^-4	0.492	INTRON CG34353
3R	23695643	3R_23695643_SNP [dm3] 3R_27869921_SNP [dm6]	C	T	2.516e^-4	0.492	INTRON CG34353
3R	10574284	3R_10574284_SNP [dm3] 3R_14748562_SNP [dm6]	A	C	2.518e^-4	0.492	UPSTREAM jvl INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	601580	3L_601580_SNP [dm3] 3L_601580_SNP [dm6]	A	C	2.523e^-4	0.492	INTRON CG13893
X	380948	X_380948_SNP [dm3] X_486915_SNP [dm6]	T	C	2.524e^-4	0.492	NON_SYNONYMOUS_CODING CG18273 UPSTREAM CG3156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19248472	2L_19248472_SNP [dm3] 2L_19248472_SNP [dm6]	T	C	2.527e^-4	0.492	INTERGENIC
X	4279781	X_4279781_SNP [dm3] X_4385748_SNP [dm6]	A	G	2.527e^-4	0.492	INTERGENIC	regulatory region REDfly_CRMs
3R	22463593	3R_22463593_SNP [dm3] 3R_26637871_SNP [dm6]	A	T	2.532e^-4	0.492	DOWNSTREAM TwdlS INTERGENIC
2L	19189371	2L_19189371_SNP [dm3] 2L_19189371_SNP [dm6]	G	A	2.534e^-4	0.492	UPSTREAM drl INTRON pigeon	TF binding site mE1_TFBS_HSA
2L	1923094	2L_1923094_SNP [dm3] 2L_1923094_SNP [dm6]	G	A	2.540e^-4	0.493	INTRON CG7337
3R	16860393	3R_16860393_SNP [dm3] 3R_21034671_SNP [dm6]	C	G	2.542e^-4	0.493	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
X	16155712	X_16155712_DEL [dm3] X_16261679_DEL [dm6]	AAC	T	2.547e^-4	0.493	INTERGENIC
2L	14690152	2L_14690152_SNP [dm3] 2L_14690152_SNP [dm6]	G	A	2.558e^-4	0.493	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	9259185	3L_9259185_SNP [dm3] 3L_9266085_SNP [dm6]	G	T	2.559e^-4	0.493	INTRON GluRIB
X	15643581	X_15643581_SNP [dm3] X_15749548_SNP [dm6]	G	A	2.559e^-4	0.493	DOWNSTREAM Tcp-1zeta INTRON CG8239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6281552	X_6281552_DEL [dm3] X_6387519_DEL [dm6]	GGG	G	2.559e^-4	0.493	INTERGENIC
X	6345306	X_6345306_SNP [dm3] X_6451273_SNP [dm6]	G	C	2.562e^-4	0.493	INTRON CG42340
2L	3976481	2L_3976481_SNP [dm3] 2L_3976481_SNP [dm6]	G	T	2.566e^-4	0.494	INTRON fred
2R	5471570	2R_5471570_SNP [dm3] 2R_9584065_SNP [dm6]	C	T	2.576e^-4	0.495	NON_SYNONYMOUS_CODING CG1868 UPSTREAM Updo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	3179789	2L_3179789_SNP [dm3] 2L_3179789_SNP [dm6]	G	A	2.581e^-4	0.495	INTRON CG34393
2L	3179790	2L_3179790_SNP [dm3] 2L_3179790_SNP [dm6]	C	T	2.581e^-4	0.495	INTRON CG34393
3R	7793624	3R_7793624_SNP [dm3] 3R_11967902_SNP [dm6]	T	G	2.586e^-4	0.495	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	354959	X_354959_SNP [dm3] X_460926_SNP [dm6]	T	A	2.587e^-4	0.495	UTR_5_PRIME ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6581311	3L_6581311_SNP [dm3] 3L_6588211_SNP [dm6]	C	T	2.588e^-4	0.495	INTRON CG18769 & 1 other
X	18335520	X_18335520_SNP [dm3] X_18441487_SNP [dm6]	A	G	2.591e^-4	0.495	UPSTREAM CG32548 INTERGENIC
2R	5380548	2R_5380548_SNP [dm3] 2R_9493043_SNP [dm6]	A	C	2.598e^-4	0.496	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21142974	3R_21142974_SNP [dm3] 3R_25317252_SNP [dm6]	G	T	2.602e^-4	0.496	INTRON CG10553	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13287773	2L_13287773_SNP [dm3] 2L_13287773_SNP [dm6]	A	G	2.614e^-4	0.498	SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
3L	17969208	3L_17969208_SNP [dm3] 3L_17976108_SNP [dm6]	A	G	2.617e^-4	0.498	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24848216	3R_24848216_SNP [dm3] 3R_29022494_SNP [dm6]	T	C	2.619e^-4	0.498	UPSTREAM CR44264 EXON CR45567
3R	1717723	3R_1717723_SNP [dm3] 3R_5892001_SNP [dm6]	A	G	2.632e^-4	0.5	INTRON CG34113
3L	15292163	3L_15292163_SNP [dm3] 3L_15299063_SNP [dm6]	G	A	2.636e^-4	0.5	INTRON Best4
3R	2488931	3R_2488931_SNP [dm3] 3R_6663209_SNP [dm6]	T	C	2.640e^-4	0.5	UTR_5_PRIME lab INTRON lab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	12824865	2L_12824865_SNP [dm3] 2L_12824865_SNP [dm6]	C	T	2.641e^-4	0.5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	884585	3L_884585_SNP [dm3] 3L_884585_SNP [dm6]	C	T	2.646e^-4	0.5	INTRON CG32479
2L	15336117	2L_15336117_SNP [dm3] 2L_15336117_SNP [dm6]	G	A	2.651e^-4	0.5	UTR_3_PRIME esg
2L	15336233	2L_15336233_SNP [dm3] 2L_15336233_SNP [dm6]	T	A	2.651e^-4	0.5	DOWNSTREAM esg INTERGENIC
3R	27245053	3R_27245053_SNP [dm3] 3R_31419331_SNP [dm6]	A	G	2.652e^-4	0.5	INTRON Gprk2
3L	11861482	3L_11861482_SNP [dm3] 3L_11868382_SNP [dm6]	C	G	2.674e^-4	0.503	INTRON CG44837	TF binding site BDTNP1_TFBS_twi
3R	24112346	3R_24112346_SNP [dm3] 3R_28286624_SNP [dm6]	C	T	2.674e^-4	0.503	INTERGENIC
X	5904153	X_5904153_SNP [dm3] X_6010120_SNP [dm6]	C	T	2.677e^-4	0.503	INTRON mab-21
3R	15794984	3R_15794984_SNP [dm3] 3R_19969262_SNP [dm6]	C	A	2.682e^-4	0.503	INTRON Hs6st
2L	4959354	2L_4959354_SNP [dm3] 2L_4959354_SNP [dm6]	C	T	2.686e^-4	0.503	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad
X	393225	X_393225_SNP [dm3] X_499192_SNP [dm6]	G	A	2.689e^-4	0.503	UPSTREAM svr INTRON svr EXON CR44892	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16283642	2R_16283642_SNP [dm3] 2R_20396137_SNP [dm6]	A	G	2.695e^-4	0.503	INTERGENIC
3R	17235404	3R_17235404_SNP [dm3] 3R_21409682_SNP [dm6]	T	C	2.698e^-4	0.503	DOWNSTREAM lbl INTRON CheB93b
3L	17757244	3L_17757244_SNP [dm3] 3L_17764144_SNP [dm6]	C	T	2.698e^-4	0.503	UTR_5_PRIME Adgf-A & 1 other	TF binding site mE1_TFBS_Trl
3L	14370944	3L_14370944_SNP [dm3] 3L_14377844_SNP [dm6]	T	G	2.699e^-4	0.503	INTERGENIC
3L	12359317	3L_12359317_SNP [dm3] 3L_12366217_SNP [dm6]	A	G	2.702e^-4	0.503	INTERGENIC
3R	14120644	3R_14120644_SNP [dm3] 3R_18294922_SNP [dm6]	C	T	2.709e^-4	0.503	UPSTREAM l_3_05822 INTRON l_3_05822
X	20053682	X_20053682_SNP [dm3] X_20159649_SNP [dm6]	C	T	2.709e^-4	0.503	UTR_5_PRIME Rab35 DOWNSTREAM Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3320583	3R_3320583_SNP [dm3] 3R_7494861_SNP [dm6]	T	C	2.713e^-4	0.503	UTR_3_PRIME alpha-Est9
X	20751958	X_20751958_SNP [dm3] X_20880931_SNP [dm6]	G	A	2.713e^-4	0.503	DOWNSTREAM I-3 INTRON shakB
2L	2717206	2L_2717206_DEL [dm3] 2L_2717206_DEL [dm6]	TG	T	2.718e^-4	0.503	INTRON CG31690
3R	23678344	3R_23678344_SNP [dm3] 3R_27852622_SNP [dm6]	C	T	2.720e^-4	0.503	INTRON CG34353
2R	12093368	2R_12093368_SNP [dm3] 2R_16205863_SNP [dm6]	A	G	2.724e^-4	0.503	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
3R	19145867	3R_19145867_SNP [dm3] 3R_23320145_SNP [dm6]	C	T	2.740e^-4	0.503	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15336217	2L_15336217_SNP [dm3] 2L_15336217_SNP [dm6]	G	A	2.762e^-4	0.503	DOWNSTREAM esg INTERGENIC
X	16881879	X_16881879_SNP [dm3] X_16987846_SNP [dm6]	T	A	2.773e^-4	0.503	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb

By genomic position
Variant impact
Gene name

pc_MB_Beta_Fusion phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results