DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.128e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.7478	0.0165
In_2L_t	6.8071	0.0333

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

6835 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10640543	2L_10640543_SNP [dm3] 2L_10640543_SNP [dm6]	G	A	2.141e^-9	0.002	NON_SYNONYMOUS_CODING CG31872 DOWNSTREAM CR45351
2R	18294499	2R_18294499_SNP [dm3] 2R_22406994_SNP [dm6]	C	T	2.435e^-9	0.002	INTRON CG6044	TF binding site BDTNP1_TFBS_twi
3L	1078558	3L_1078558_SNP [dm3] 3L_1078558_SNP [dm6]	A	G	2.417e^-8	0.012	INTRON bab1	TF binding site mE1_TFBS_HSA
3L	1078768	3L_1078768_SNP [dm3] 3L_1078768_SNP [dm6]	G	A	2.680e^-8	0.012	INTRON bab1	TF binding site mE1_TFBS_HSA
2L	10640411	2L_10640411_SNP [dm3] 2L_10640411_SNP [dm6]	G	A	4.837e^-8	0.012	NON_SYNONYMOUS_CODING CG31872 DOWNSTREAM CR45351
2R	12050760	2R_12050760_SNP [dm3] 2R_16163255_SNP [dm6]	C	T	5.142e^-8	0.012	INTRON lbk
3L	18839432	3L_18839432_SNP [dm3] 3L_18846332_SNP [dm6]	T	G	5.669e^-8	0.012	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2729066	X_2729066_SNP [dm3] X_2835033_SNP [dm6]	C	T	5.669e^-8	0.012	INTRON kirre
X	8947767	X_8947767_DEL [dm3] X_9053734_DEL [dm6]	GAA	T	5.669e^-8	0.012	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3L	1752641	3L_1752641_SNP [dm3] 3L_1752641_SNP [dm6]	C	T	9.108e^-8	0.017	NON_SYNONYMOUS_CODING Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	1078912	3L_1078912_SNP [dm3] 3L_1078912_SNP [dm6]	A	C	1.027e^-7	0.017	INTRON bab1	TF binding site mE1_TFBS_HSA
2L	6026813	2L_6026813_SNP [dm3] 2L_6026813_SNP [dm6]	A	T	1.791e^-7	0.022	INTRON CG9109
3L	12240608	3L_12240608_SNP [dm3] 3L_12247508_SNP [dm6]	C	T	1.860e^-7	0.022	INTRON app
3L	12240611	3L_12240611_SNP [dm3] 3L_12247511_SNP [dm6]	A	T	1.860e^-7	0.022	INTRON app
3L	12240612	3L_12240612_SNP [dm3] 3L_12247512_SNP [dm6]	C	T	1.860e^-7	0.022	INTRON app
3R	20521920	3R_20521920_DEL [dm3] 3R_24696198_DEL [dm6]	AACCAAAA	A	2.232e^-7	0.022	INTRON slo
2R	18643889	2R_18643889_SNP [dm3] 2R_22756384_SNP [dm6]	T	G	2.279e^-7	0.022	DOWNSTREAM CG13526 INTRON CG42260 EXON CR30267
3L	7066385	3L_7066385_SNP [dm3] 3L_7073285_SNP [dm6]	C	G	2.329e^-7	0.022	DOWNSTREAM CG34030 INTRON CG8641
X	3662251	X_3662251_SNP [dm3] X_3768218_SNP [dm6]	T	G	2.471e^-7	0.022	INTRON tlk
3L	12662721	3L_12662721_SNP [dm3] 3L_12669621_SNP [dm6]	T	C	2.551e^-7	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10857656	2R_10857656_SNP [dm3] 2R_14970151_SNP [dm6]	A	G	3.079e^-7	0.022	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16095572	2R_16095572_DEL [dm3] 2R_20208067_DEL [dm6]	GGCTGT	G	3.079e^-7	0.022	INTERGENIC
2R	2971126	2R_2971126_SNP [dm3] 2R_7083621_SNP [dm6]	G	T	3.079e^-7	0.022	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7066059	3L_7066059_SNP [dm3] 3L_7072959_SNP [dm6]	G	A	3.079e^-7	0.022	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7066061	3L_7066061_SNP [dm3] 3L_7072961_SNP [dm6]	A	G	3.079e^-7	0.022	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7897771	3L_7897771_SNP [dm3] 3L_7904671_SNP [dm6]	A	G	3.079e^-7	0.022	INTRON pbl
2R	17930476	2R_17930476_DEL [dm3] 2R_22042971_DEL [dm6]	GT	G	3.418e^-7	0.022	UPSTREAM PpD5 INTERGENIC
2R	2995490	2R_2995490_SNP [dm3] 2R_7107985_SNP [dm6]	A	T	4.181e^-7	0.022	INTRON esn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	2999266	2R_2999266_SNP [dm3] 2R_7111761_SNP [dm6]	C	T	4.181e^-7	0.022	INTRON esn	TF binding site mE1_TFBS_inv
2R	3006289	2R_3006289_SNP [dm3] 2R_7118784_SNP [dm6]	C	T	4.181e^-7	0.022	SYNONYMOUS_CODING esn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	15466647	X_15466647_SNP [dm3] X_15572614_SNP [dm6]	C	T	4.430e^-7	0.022	NON_SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2858906	2R_2858906_SNP [dm3] 2R_6971401_SNP [dm6]	G	A	4.628e^-7	0.022	UTR_5_PRIME mim & 1 other DOWNSTREAM Cyp6u1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	17930579	2R_17930579_SNP [dm3] 2R_22043074_SNP [dm6]	A	G	4.695e^-7	0.022	UPSTREAM PpD5 INTERGENIC
2R	17930585	2R_17930585_SNP [dm3] 2R_22043080_SNP [dm6]	G	T	4.695e^-7	0.022	UPSTREAM PpD5 INTERGENIC
2R	17930594	2R_17930594_SNP [dm3] 2R_22043089_SNP [dm6]	C	T	4.695e^-7	0.022	UPSTREAM PpD5 INTERGENIC
2L	18152890	2L_18152890_SNP [dm3] 2L_18152890_SNP [dm6]	T	C	4.851e^-7	0.022	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	13536113	2L_13536113_SNP [dm3] 2L_13536113_SNP [dm6]	T	G	4.944e^-7	0.022	UPSTREAM CG15638 INTRON B4
3L	1077822	3L_1077822_SNP [dm3] 3L_1077822_SNP [dm6]	C	T	5.249e^-7	0.022	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1077938	3L_1077938_SNP [dm3] 3L_1077938_SNP [dm6]	G	T	5.249e^-7	0.022	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078420	3L_1078420_SNP [dm3] 3L_1078420_SNP [dm6]	C	T	5.249e^-7	0.022	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078448	3L_1078448_INS [dm3] 3L_1078448_INS [dm6]	C	CTACC	5.249e^-7	0.022	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078458	3L_1078458_INS [dm3] 3L_1078458_INS [dm6]	G	GC	5.249e^-7	0.022	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078491	3L_1078491_SNP [dm3] 3L_1078491_SNP [dm6]	A	G	5.249e^-7	0.022	INTRON bab1	TF binding site mE1_TFBS_HSA
3L	17634480	3L_17634480_SNP [dm3] 3L_17641380_SNP [dm6]	A	C	5.372e^-7	0.022	INTRON Pep
3L	17644925	3L_17644925_DEL [dm3] 3L_17651825_DEL [dm6]	TGGC	T	5.372e^-7	0.022	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10497272	2R_10497272_SNP [dm3] 2R_14609767_SNP [dm6]	C	G	5.467e^-7	0.022	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9527549	2L_9527549_SNP [dm3] 2L_9527549_SNP [dm6]	G	C	5.835e^-7	0.022	UPSTREAM CG31883 INTRON Oatp30B
2R	3656950	2R_3656950_SNP [dm3] 2R_7769445_SNP [dm6]	C	T	5.835e^-7	0.022	INTRON CG30497 & 1 other
2R	17930908	2R_17930908_DEL [dm3] 2R_22043403_DEL [dm6]	GG	G	6.221e^-7	0.023	UPSTREAM PpD5 INTERGENIC
3L	18934617	3L_18934617_SNP [dm3] 3L_18941517_SNP [dm6]	C	T	6.597e^-7	0.024	INTRON CG32204
2R	13472399	2R_13472399_SNP [dm3] 2R_17584894_SNP [dm6]	A	G	6.768e^-7	0.024	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
2R	13472443	2R_13472443_DEL [dm3] 2R_17584938_DEL [dm6]	AG	A	6.768e^-7	0.024	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
3L	17643363	3L_17643363_SNP [dm3] 3L_17650263_SNP [dm6]	G	A	6.768e^-7	0.024	SYNONYMOUS_CODING Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13250181	3L_13250181_SNP [dm3] 3L_13257081_SNP [dm6]	C	T	7.087e^-7	0.024	INTRON caps
3L	13250184	3L_13250184_SNP [dm3] 3L_13257084_SNP [dm6]	G	A	7.087e^-7	0.024	INTRON caps
3L	1078426	3L_1078426_SNP [dm3] 3L_1078426_SNP [dm6]	C	A	8.050e^-7	0.024	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078479	3L_1078479_SNP [dm3] 3L_1078479_SNP [dm6]	A	C	8.050e^-7	0.024	INTRON bab1	TF binding site mE1_TFBS_HSA
3L	1078482	3L_1078482_SNP [dm3] 3L_1078482_SNP [dm6]	T	A	8.050e^-7	0.024	INTRON bab1	TF binding site mE1_TFBS_HSA
3L	1080084	3L_1080084_SNP [dm3] 3L_1080084_SNP [dm6]	A	G	8.050e^-7	0.024	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080496	3L_1080496_SNP [dm3] 3L_1080496_SNP [dm6]	A	C	8.050e^-7	0.024	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1080508	3L_1080508_SNP [dm3] 3L_1080508_SNP [dm6]	C	T	8.050e^-7	0.024	INTRON bab1	TF binding site mE1_TFBS_chinmo
X	2977476	X_2977476_SNP [dm3] X_3083443_SNP [dm6]	A	T	8.273e^-7	0.024	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17628711	3L_17628711_SNP [dm3] 3L_17635611_SNP [dm6]	C	T	8.303e^-7	0.024	INTRON CG7497
2L	16800227	2L_16800227_SNP [dm3] 2L_16800227_SNP [dm6]	G	A	8.577e^-7	0.025	SYNONYMOUS_CODING Ugt36Bc
2L	17540736	2L_17540736_SNP [dm3] 2L_17540736_SNP [dm6]	T	G	8.785e^-7	0.025	INTERGENIC
3L	1078686	3L_1078686_SNP [dm3] 3L_1078686_SNP [dm6]	A	C	8.876e^-7	0.025	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13539214	2L_13539214_SNP [dm3] 2L_13539214_SNP [dm6]	A	G	9.629e^-7	0.026	INTRON B4
X	19137557	X_19137557_SNP [dm3] X_19243524_SNP [dm6]	T	G	9.634e^-7	0.026	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2R	18198511	2R_18198511_SNP [dm3] 2R_22311006_SNP [dm6]	C	T	9.677e^-7	0.026	INTRON wdp
2L	8043171	2L_8043171_INS [dm3] 2L_8043171_INS [dm6]	C	TGAAACAATAA...	9.936e^-7	0.026	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4012147	3L_4012147_SNP [dm3] 3L_4012147_SNP [dm6]	C	G	1.003e^-6	0.026	INTERGENIC
X	1889917	X_1889917_INS [dm3] X_1995884_INS [dm6]	G	GCGTGTGTG	1.069e^-6	0.027	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
3L	7909074	3L_7909074_SNP [dm3] 3L_7915974_SNP [dm6]	C	A	1.112e^-6	0.028	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	1.112e^-6	0.028	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17704712	3L_17704712_SNP [dm3] 3L_17711612_SNP [dm6]	G	A	1.204e^-6	0.029	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17704740	3L_17704740_SNP [dm3] 3L_17711640_SNP [dm6]	T	C	1.204e^-6	0.029	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17760751	3L_17760751_SNP [dm3] 3L_17767651_SNP [dm6]	G	T	1.204e^-6	0.029	INTERGENIC
3L	1078427	3L_1078427_SNP [dm3] 3L_1078427_SNP [dm6]	C	T	1.228e^-6	0.029	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1080588	3L_1080588_SNP [dm3] 3L_1080588_SNP [dm6]	A	G	1.228e^-6	0.029	INTRON bab1	TF binding site mE1_TFBS_chinmo
2L	22491522	2L_22491522_SNP [dm3] 2L_22598790_SNP [dm6]	A	G	1.408e^-6	0.031	INTERGENIC
3L	10015208	3L_10015208_SNP [dm3] 3L_10022108_SNP [dm6]	G	T	1.449e^-6	0.031	INTRON dpr6
3L	17763209	3L_17763209_SNP [dm3] 3L_17770109_SNP [dm6]	G	T	1.449e^-6	0.031	INTERGENIC
3L	7352038	3L_7352038_SNP [dm3] 3L_7358938_SNP [dm6]	G	A	1.449e^-6	0.031	SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8043231	2L_8043231_SNP [dm3] 2L_8043231_SNP [dm6]	T	G	1.481e^-6	0.031	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9048888	2L_9048888_SNP [dm3] 2L_9048888_SNP [dm6]	C	G	1.586e^-6	0.031	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12876728	2R_12876728_SNP [dm3] 2R_16989223_SNP [dm6]	A	C	1.616e^-6	0.031	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1080989	3L_1080989_SNP [dm3] 3L_1080989_SNP [dm6]	C	T	1.631e^-6	0.031	INTRON bab1
2L	6531570	2L_6531570_SNP [dm3] 2L_6531570_SNP [dm6]	G	A	1.705e^-6	0.031	INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20080899	2L_20080899_DEL [dm3] 2L_20080899_DEL [dm6]	TGTAT	T	1.709e^-6	0.031	UPSTREAM fok DOWNSTREAM fok INTRON neb & 1 other	TF binding site mE1_TFBS_inv
3L	1078685	3L_1078685_SNP [dm3] 3L_1078685_SNP [dm6]	A	C	1.718e^-6	0.031	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	1.728e^-6	0.031	INTRON pigs
3L	7389139	3L_7389139_INS [dm3] 3L_7396039_INS [dm6]	T	TT	1.733e^-6	0.031	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17646185	3L_17646185_SNP [dm3] 3L_17653085_SNP [dm6]	G	A	1.798e^-6	0.031	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17704723	3L_17704723_SNP [dm3] 3L_17711623_SNP [dm6]	T	G	1.808e^-6	0.031	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5308583	2R_5308583_SNP [dm3] 2R_9421078_SNP [dm6]	C	T	1.821e^-6	0.031	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
4	981576	4_981576_DEL [dm3] 4_960950_DEL [dm6]	TT	T	1.825e^-6	0.031	INTRON CR44030	transposable element FlyBase
3L	1078645	3L_1078645_SNP [dm3] 3L_1078645_SNP [dm6]	G	T	1.825e^-6	0.031	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4688747	3R_4688747_INS [dm3] 3R_8863025_INS [dm6]	T	TCTTTTTTTATTTTTT...	2.012e^-6	0.031	DOWNSTREAM tRNA:R:85Cb INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13154578	2L_13154578_INS [dm3] 2L_13154578_INS [dm6]	G	GG	2.074e^-6	0.031	INTERGENIC
2R	5283802	2R_5283802_SNP [dm3] 2R_9396297_SNP [dm6]	A	C	2.074e^-6	0.031	UTR_3_PRIME CG8801 UPSTREAM CG8800 DOWNSTREAM CG8801	TF binding site mE1_TFBS_cad
2R	18873290	2R_18873290_SNP [dm3] 2R_22985767_SNP [dm6]	T	C	2.101e^-6	0.031	SYNONYMOUS_CODING CG9897 UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other INTRON twi EXON CR42742
3R	3839424	3R_3839424_SNP [dm3] 3R_8013702_SNP [dm6]	T	G	2.132e^-6	0.031	UPSTREAM Pbp95 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	18331619	2R_18331619_SNP [dm3] 2R_22444114_SNP [dm6]	A	G	2.176e^-6	0.031	INTERGENIC
2L	7018954	2L_7018954_SNP [dm3] 2L_7018954_SNP [dm6]	A	T	2.193e^-6	0.031	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2L	7595394	2L_7595394_SNP [dm3] 2L_7595394_SNP [dm6]	A	T	2.226e^-6	0.031	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6531546	2L_6531546_DEL [dm3] 2L_6531546_DEL [dm6]	AA	A	2.244e^-6	0.031	INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13831104	2R_13831104_SNP [dm3] 2R_17943599_SNP [dm6]	C	A	2.244e^-6	0.031	INTERGENIC
3L	9806065	3L_9806065_SNP [dm3] 3L_9812965_SNP [dm6]	T	C	2.283e^-6	0.031	UPSTREAM CG43897 INTERGENIC
3L	9806071	3L_9806071_SNP [dm3] 3L_9812971_SNP [dm6]	G	A	2.283e^-6	0.031	UPSTREAM CG43897 INTERGENIC
2R	1410994	2R_1410994_SNP [dm3] 2R_5523489_SNP [dm6]	T	A	2.374e^-6	0.031	INTRON CG30438	transposable element FlyBase
2R	1410995	2R_1410995_SNP [dm3] 2R_5523490_SNP [dm6]	A	T	2.374e^-6	0.031	INTRON CG30438	transposable element FlyBase
2R	1410997	2R_1410997_DEL [dm3] 2R_5523492_DEL [dm6]	GACAAAGA	G	2.374e^-6	0.031	INTRON CG30438	transposable element FlyBase
2R	20205144	2R_20205144_INS [dm3] 2R_24317621_INS [dm6]	A	AA	2.445e^-6	0.031	INTERGENIC
3L	17632616	3L_17632616_SNP [dm3] 3L_17639516_SNP [dm6]	G	A	2.445e^-6	0.031	SYNONYMOUS_CODING Pep UTR_3_PRIME Pep	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8059747	X_8059747_SNP [dm3] X_8165714_SNP [dm6]	A	G	2.445e^-6	0.031	UPSTREAM Or7a DOWNSTREAM CG2278 INTERGENIC
2L	8043071	2L_8043071_SNP [dm3] 2L_8043071_SNP [dm6]	A	G	2.495e^-6	0.031	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	14297979	X_14297979_INS [dm3] X_14403946_INS [dm6]	A	ACA	2.503e^-6	0.031	INTRON dpr8
2R	2859083	2R_2859083_SNP [dm3] 2R_6971578_SNP [dm6]	A	C	2.515e^-6	0.031	START_GAINED mim & 1 other UTR_5_PRIME mim & 1 other DOWNSTREAM Cyp6u1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	10958382	2L_10958382_SNP [dm3] 2L_10958382_SNP [dm6]	A	T	2.527e^-6	0.031	INTRON dpr2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1835979	2L_1835979_SNP [dm3] 2L_1835979_SNP [dm6]	G	A	2.527e^-6	0.031	UPSTREAM wry INTERGENIC
2L	1835997	2L_1835997_SNP [dm3] 2L_1835997_SNP [dm6]	C	T	2.527e^-6	0.031	UPSTREAM wry INTERGENIC
2L	9290231	2L_9290231_SNP [dm3] 2L_9290231_SNP [dm6]	T	C	2.527e^-6	0.031	INTRON Ggamma30A
2R	13187107	2R_13187107_SNP [dm3] 2R_17299602_SNP [dm6]	C	A	2.527e^-6	0.031	INTRON mbl
2R	18297797	2R_18297797_SNP [dm3] 2R_22410292_SNP [dm6]	A	G	2.527e^-6	0.031	DOWNSTREAM ventrally-expressed-protein-D INTRON qkr58E-3
2R	18443755	2R_18443755_SNP [dm3] 2R_22556250_SNP [dm6]	C	T	2.527e^-6	0.031	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19964243	2R_19964243_SNP [dm3] 2R_24076720_SNP [dm6]	C	T	2.527e^-6	0.031	SYNONYMOUS_CODING Mlp60A DOWNSTREAM Mlp60A	TF binding site mE1_TFBS_cad
2R	9939320	2R_9939320_INS [dm3] 2R_14051815_INS [dm6]	A	ACTCA	2.527e^-6	0.031	INTRON mam
2R	9939325	2R_9939325_SNP [dm3] 2R_14051820_SNP [dm6]	C	T	2.527e^-6	0.031	INTRON mam
3L	10016127	3L_10016127_SNP [dm3] 3L_10023027_SNP [dm6]	G	A	2.527e^-6	0.031	INTRON dpr6
3L	11090235	3L_11090235_SNP [dm3] 3L_11097135_SNP [dm6]	C	T	2.527e^-6	0.031	UPSTREAM CG6279 DOWNSTREAM CG6272 INTRON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17752638	3L_17752638_SNP [dm3] 3L_17759538_SNP [dm6]	T	C	2.527e^-6	0.031	UTR_3_PRIME CG32182 UPSTREAM CG32181 INTRON Adgf-A & 1 other
3L	17786028	3L_17786028_SNP [dm3] 3L_17792928_SNP [dm6]	A	G	2.527e^-6	0.031	SYNONYMOUS_CODING CG42816
3L	3888127	3L_3888127_DEL [dm3] 3L_3888127_DEL [dm6]	TT	T	2.527e^-6	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3888133	3L_3888133_SNP [dm3] 3L_3888133_SNP [dm6]	G	A	2.527e^-6	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7067556	3L_7067556_SNP [dm3] 3L_7074456_SNP [dm6]	G	A	2.527e^-6	0.031	SPLICE_SITE_REGION CG34030 INTRON CG8641 & 1 other
3L	894486	3L_894486_SNP [dm3] 3L_894486_SNP [dm6]	C	A	2.527e^-6	0.031	UTR_3_PRIME CG32479 DOWNSTREAM CG32479
3L	9331563	3L_9331563_SNP [dm3] 3L_9338463_SNP [dm6]	C	T	2.527e^-6	0.031	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
3L	9809362	3L_9809362_SNP [dm3] 3L_9816262_SNP [dm6]	G	A	2.527e^-6	0.031	UTR_5_PRIME CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9809844	3L_9809844_SNP [dm3] 3L_9816744_SNP [dm6]	C	G	2.527e^-6	0.031	INTRON CG43897
3R	11204128	3R_11204128_SNP [dm3] 3R_15378406_SNP [dm6]	G	T	2.527e^-6	0.031	INTRON Rbp	TF binding site mE1_TFBS_HSA
3R	9769739	3R_9769739_SNP [dm3] 3R_13944017_SNP [dm6]	G	A	2.527e^-6	0.031	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
X	8059622	X_8059622_SNP [dm3] X_8165589_SNP [dm6]	C	G	2.527e^-6	0.031	SYNONYMOUS_CODING Or7a DOWNSTREAM CG2278
X	8059625	X_8059625_SNP [dm3] X_8165592_SNP [dm6]	T	G	2.527e^-6	0.031	SYNONYMOUS_CODING Or7a DOWNSTREAM CG2278
X	8059715	X_8059715_SNP [dm3] X_8165682_SNP [dm6]	T	C	2.527e^-6	0.031	SYNONYMOUS_CODING Or7a DOWNSTREAM CG2278
X	8059759	X_8059759_SNP [dm3] X_8165726_SNP [dm6]	C	G	2.527e^-6	0.031	UPSTREAM Or7a DOWNSTREAM CG2278 INTERGENIC
3R	10244945	3R_10244945_SNP [dm3] 3R_14419223_SNP [dm6]	C	T	2.662e^-6	0.031	SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_chinmo
2L	12854031	2L_12854031_SNP [dm3] 2L_12854031_SNP [dm6]	A	T	2.666e^-6	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18022669	2R_18022669_SNP [dm3] 2R_22135164_SNP [dm6]	C	T	2.666e^-6	0.031	INTERGENIC
3L	20239194	3L_20239194_SNP [dm3] 3L_20246094_SNP [dm6]	A	G	2.666e^-6	0.031	DOWNSTREAM CG6951 INTERGENIC
3L	3533904	3L_3533904_SNP [dm3] 3L_3533904_SNP [dm6]	G	A	2.666e^-6	0.031	INTRON Eip63E
3L	3852912	3L_3852912_DEL [dm3] 3L_3852912_DEL [dm6]	ACAAAGCA	A	2.666e^-6	0.031	INTRON Awh
3R	3129066	3R_3129066_SNP [dm3] 3R_7303344_SNP [dm6]	C	T	2.666e^-6	0.031	INTRON rn
3L	18835836	3L_18835836_SNP [dm3] 3L_18842736_SNP [dm6]	T	C	2.867e^-6	0.031	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
3L	21439332	3L_21439332_SNP [dm3] 3L_21446232_SNP [dm6]	T	C	2.900e^-6	0.031	UTR_5_PRIME Syx7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5285972	2R_5285972_INS [dm3] 2R_9398467_INS [dm6]	A	AA	2.951e^-6	0.031	UPSTREAM l_2_k10201 INTRON CG8801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	2997923	2R_2997923_SNP [dm3] 2R_7110418_SNP [dm6]	C	T	2.956e^-6	0.031	INTRON esn
2L	15767680	2L_15767680_SNP [dm3] 2L_15767680_SNP [dm6]	T	C	2.989e^-6	0.031	SYNONYMOUS_CODING wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15767684	2L_15767684_SNP [dm3] 2L_15767684_SNP [dm6]	G	A	2.989e^-6	0.031	NON_SYNONYMOUS_CODING wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13141395	2R_13141395_SNP [dm3] 2R_17253890_SNP [dm6]	T	G	2.989e^-6	0.031	INTRON mbl EXON CR43660
2R	8607571	2R_8607571_SNP [dm3] 2R_12720066_SNP [dm6]	A	C	3.215e^-6	0.031	INTRON CG42663
2L	13538745	2L_13538745_INS [dm3] 2L_13538745_INS [dm6]	A	ATATA	3.364e^-6	0.031	INTRON B4
3R	3877655	3R_3877655_SNP [dm3] 3R_8051933_SNP [dm6]	T	A	3.433e^-6	0.031	INTRON CG43060
2L	19587673	2L_19587673_DEL [dm3] 2L_19587673_DEL [dm6]	TGTT	T	3.489e^-6	0.031	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13946711	2L_13946711_SNP [dm3] 2L_13946711_SNP [dm6]	G	A	3.572e^-6	0.031	INTRON Ance-3 & 1 other
2L	19819648	2L_19819648_SNP [dm3] 2L_19819648_SNP [dm6]	T	A	3.572e^-6	0.031	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	5283810	2R_5283810_SNP [dm3] 2R_9396305_SNP [dm6]	A	T	3.572e^-6	0.031	UTR_3_PRIME CG8801 UPSTREAM CG8800 DOWNSTREAM CG8801	TF binding site mE1_TFBS_cad
2R	5283819	2R_5283819_SNP [dm3] 2R_9396314_SNP [dm6]	T	C	3.572e^-6	0.031	UTR_3_PRIME CG8801 UPSTREAM CG8800 DOWNSTREAM CG8801	TF binding site mE1_TFBS_cad
3L	17624466	3L_17624466_SNP [dm3] 3L_17631366_SNP [dm6]	C	T	3.572e^-6	0.031	UPSTREAM CR44566 DOWNSTREAM CG7510 INTERGENIC
3L	3571705	3L_3571705_SNP [dm3] 3L_3571705_SNP [dm6]	A	T	3.572e^-6	0.031	INTRON Eip63E
3L	8811338	3L_8811338_SNP [dm3] 3L_8818238_SNP [dm6]	A	C	3.572e^-6	0.031	INTERGENIC
3L	9809553	3L_9809553_SNP [dm3] 3L_9816453_SNP [dm6]	C	G	3.572e^-6	0.031	INTRON CG43897
3R	8002206	3R_8002206_SNP [dm3] 3R_12176484_SNP [dm6]	T	C	3.572e^-6	0.031	INTERGENIC
3L	14659491	3L_14659491_SNP [dm3] 3L_14666391_SNP [dm6]	T	C	3.630e^-6	0.031	INTRON dlp	TF binding site BDTNP1_TFBS_da
3L	14907809	3L_14907809_SNP [dm3] 3L_14914709_SNP [dm6]	A	G	3.630e^-6	0.031	INTRON DCX-EMAP
3L	17624983	3L_17624983_SNP [dm3] 3L_17631883_SNP [dm6]	G	T	3.630e^-6	0.031	DOWNSTREAM CG7510 EXON CR44566
3L	17625018	3L_17625018_SNP [dm3] 3L_17631918_SNP [dm6]	T	C	3.630e^-6	0.031	DOWNSTREAM CG7510 EXON CR44566
2L	10086228	2L_10086228_SNP [dm3] 2L_10086228_SNP [dm6]	C	G	3.672e^-6	0.031	SYNONYMOUS_CODING CG44153
2L	1916842	2L_1916842_SNP [dm3] 2L_1916842_SNP [dm6]	A	G	3.688e^-6	0.031	INTRON CG7337
3L	4012057	3L_4012057_SNP [dm3] 3L_4012057_SNP [dm6]	A	C	3.722e^-6	0.031	INTERGENIC
2R	2839454	2R_2839454_SNP [dm3] 2R_6951949_SNP [dm6]	C	A	3.790e^-6	0.031	SYNONYMOUS_CODING ppk25 INTRON mim & 1 other
3R	10457417	3R_10457417_SNP [dm3] 3R_14631695_SNP [dm6]	G	C	3.791e^-6	0.031	INTRON CG7886 & 1 other
3L	21034192	3L_21034192_INS [dm3] 3L_21041092_INS [dm6]	T	TCT	3.897e^-6	0.031	INTRON siz	TF binding site mE1_TFBS_cad
2R	3979601	2R_3979601_SNP [dm3] 2R_8092096_SNP [dm6]	C	T	4.064e^-6	0.031	START_GAINED CG8713 UTR_5_PRIME CG8713 DOWNSTREAM sut3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	3980697	2R_3980697_SNP [dm3] 2R_8093192_SNP [dm6]	G	T	4.064e^-6	0.031	INTRON CG8713
3L	7785080	3L_7785080_SNP [dm3] 3L_7791980_SNP [dm6]	A	T	4.123e^-6	0.031	INTRON CG32369
2R	1103315	2R_1103315_SNP [dm3] 2R_5215810_SNP [dm6]	G	A	4.291e^-6	0.031	INTRON Nipped-A	transposable element FlyBase
2L	11141137	2L_11141137_SNP [dm3] 2L_11141137_SNP [dm6]	C	A	4.408e^-6	0.031	INTRON Gyc32E
2L	18175212	2L_18175212_SNP [dm3] 2L_18175212_SNP [dm6]	G	T	4.527e^-6	0.031	INTRON CG42750
2L	18175237	2L_18175237_SNP [dm3] 2L_18175237_SNP [dm6]	T	C	4.527e^-6	0.031	INTRON CG42750
3L	16083799	3L_16083799_SNP [dm3] 3L_16090699_SNP [dm6]	A	G	4.527e^-6	0.031	START_GAINED ClC-c UTR_5_PRIME ClC-c UPSTREAM CG5235 INTRON ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17635108	3L_17635108_DEL [dm3] 3L_17642008_DEL [dm6]	TGT	T	4.527e^-6	0.031	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17635247	3L_17635247_DEL [dm3] 3L_17642147_DEL [dm6]	GAG	G	4.527e^-6	0.031	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17635267	3L_17635267_DEL [dm3] 3L_17642167_DEL [dm6]	AACA	A	4.527e^-6	0.031	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17635932	3L_17635932_SNP [dm3] 3L_17642832_SNP [dm6]	A	T	4.527e^-6	0.031	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3L	17636192	3L_17636192_SNP [dm3] 3L_17643092_SNP [dm6]	C	T	4.527e^-6	0.031	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17637695	3L_17637695_INS [dm3] 3L_17644595_INS [dm6]	C	TA	4.527e^-6	0.031	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17637932	3L_17637932_SNP [dm3] 3L_17644832_SNP [dm6]	G	C	4.527e^-6	0.031	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17637957	3L_17637957_SNP [dm3] 3L_17644857_SNP [dm6]	G	C	4.527e^-6	0.031	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17638293	3L_17638293_SNP [dm3] 3L_17645193_SNP [dm6]	T	C	4.527e^-6	0.031	UPSTREAM Pep DOWNSTREAM CG43085 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17638305	3L_17638305_SNP [dm3] 3L_17645205_SNP [dm6]	T	A	4.527e^-6	0.031	UPSTREAM Pep DOWNSTREAM CG43085 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17638454	3L_17638454_DEL [dm3] 3L_17645354_DEL [dm6]	ATAAAACGTTTTTCTGTAAA...	A	4.527e^-6	0.031	UPSTREAM Pep DOWNSTREAM CG43085 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17638587	3L_17638587_SNP [dm3] 3L_17645487_SNP [dm6]	T	A	4.527e^-6	0.031	UTR_3_PRIME CG43085 UPSTREAM Pep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	17639395	3L_17639395_SNP [dm3] 3L_17646295_SNP [dm6]	G	C	4.527e^-6	0.031	NON_SYNONYMOUS_CODING CG43085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	17642152	3L_17642152_SNP [dm3] 3L_17649052_SNP [dm6]	G	A	4.527e^-6	0.031	NON_SYNONYMOUS_CODING Ndfip DOWNSTREAM Krn	TF binding site BDTNP1_TFBS_dl
3L	17644782	3L_17644782_SNP [dm3] 3L_17651682_SNP [dm6]	A	G	4.527e^-6	0.031	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17644946	3L_17644946_DEL [dm3] 3L_17651846_DEL [dm6]	GCGAGTG	G	4.527e^-6	0.031	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17645358	3L_17645358_SNP [dm3] 3L_17652258_SNP [dm6]	A	T	4.527e^-6	0.031	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17708779	3L_17708779_SNP [dm3] 3L_17715679_SNP [dm6]	G	T	4.527e^-6	0.031	INTRON Ccn
3L	17715320	3L_17715320_SNP [dm3] 3L_17722220_SNP [dm6]	T	C	4.527e^-6	0.031	INTRON Ccn
3L	17717707	3L_17717707_SNP [dm3] 3L_17724607_SNP [dm6]	A	T	4.527e^-6	0.031	SYNONYMOUS_CODING CG6052 INTRON Ccn
3L	17717896	3L_17717896_SNP [dm3] 3L_17724796_SNP [dm6]	T	C	4.527e^-6	0.031	SYNONYMOUS_CODING CG6052 INTRON Ccn
3L	17718187	3L_17718187_SNP [dm3] 3L_17725087_SNP [dm6]	T	A	4.527e^-6	0.031	NON_SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17794867	3L_17794867_SNP [dm3] 3L_17801767_SNP [dm6]	G	T	4.527e^-6	0.031	DOWNSTREAM CG5589 INTRON NUCB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3797403	3L_3797403_SNP [dm3] 3L_3797403_SNP [dm6]	A	G	4.527e^-6	0.031	INTRON CG32264
3L	13250175	3L_13250175_SNP [dm3] 3L_13257075_SNP [dm6]	A	G	4.668e^-6	0.031	INTRON caps
3L	6510488	3L_6510488_SNP [dm3] 3L_6517388_SNP [dm6]	C	T	4.757e^-6	0.031	INTRON sfl	TF binding site mE1_TFBS_cad
X	12116286	X_12116286_SNP [dm3] X_12222253_SNP [dm6]	G	C	4.773e^-6	0.031	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	4207195	2R_4207195_SNP [dm3] 2R_8319690_SNP [dm6]	G	C	4.913e^-6	0.031	INTERGENIC
2R	4207219	2R_4207219_SNP [dm3] 2R_8319714_SNP [dm6]	C	T	4.913e^-6	0.031	INTERGENIC
3L	1167165	3L_1167165_SNP [dm3] 3L_1167165_SNP [dm6]	C	T	4.999e^-6	0.031	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	15359187	3R_15359187_INS [dm3] 3R_19533465_INS [dm6]	G	GT	4.999e^-6	0.031	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1409381	2R_1409381_SNP [dm3] 2R_5521876_SNP [dm6]	A	T	5.029e^-6	0.031	INTRON CG30438	transposable element FlyBase
X	13636010	X_13636010_SNP [dm3] X_13741977_SNP [dm6]	C	T	5.149e^-6	0.031	SPLICE_SITE_REGION Grip91 SYNONYMOUS_CODING Grip91 DOWNSTREAM CG11151
2R	964307	2R_964307_SNP [dm3] 2R_5076802_SNP [dm6]	G	A	5.250e^-6	0.031	INTERGENIC	transposable element FlyBase
2R	3747738	2R_3747738_INS [dm3] 2R_7860233_INS [dm6]	G	GAG	5.350e^-6	0.031	INTRON Dgk
3L	7798702	3L_7798702_SNP [dm3] 3L_7805602_SNP [dm6]	T	C	5.350e^-6	0.031	UPSTREAM CG32369 INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	6753570	X_6753570_SNP [dm3] X_6859537_SNP [dm6]	T	A	5.350e^-6	0.031	UPSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6757834	X_6757834_DEL [dm3] X_6863801_DEL [dm6]	GGTACATACA	G	5.350e^-6	0.031	UPSTREAM CG43736 DOWNSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6760837	X_6760837_SNP [dm3] X_6866804_SNP [dm6]	A	T	5.350e^-6	0.031	SPLICE_SITE_REGION CG14434 UTR_5_PRIME CG14434 INTRON CG43736	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	16800263	2L_16800263_SNP [dm3] 2L_16800263_SNP [dm6]	A	T	5.523e^-6	0.031	SYNONYMOUS_CODING Ugt36Bc
2L	11420020	2L_11420020_SNP [dm3] 2L_11420020_SNP [dm6]	T	C	5.616e^-6	0.031	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13807298	2L_13807298_SNP [dm3] 2L_13807298_SNP [dm6]	T	G	5.616e^-6	0.031	INTRON CAH1
2L	15347378	2L_15347378_SNP [dm3] 2L_15347378_SNP [dm6]	T	C	5.616e^-6	0.031	INTERGENIC
2L	16191675	2L_16191675_SNP [dm3] 2L_16191675_SNP [dm6]	C	T	5.616e^-6	0.031	INTERGENIC
2L	16191677	2L_16191677_SNP [dm3] 2L_16191677_SNP [dm6]	C	G	5.616e^-6	0.031	INTERGENIC
2L	16191683	2L_16191683_SNP [dm3] 2L_16191683_SNP [dm6]	C	A	5.616e^-6	0.031	INTERGENIC
2L	1821533	2L_1821533_SNP [dm3] 2L_1821533_SNP [dm6]	C	T	5.616e^-6	0.031	NON_SYNONYMOUS_CODING CG31933
2L	1821540	2L_1821540_SNP [dm3] 2L_1821540_SNP [dm6]	C	T	5.616e^-6	0.031	SYNONYMOUS_CODING CG31933
2L	18249716	2L_18249716_SNP [dm3] 2L_18249716_SNP [dm6]	T	A	5.616e^-6	0.031	INTRON CG42750
2L	18249922	2L_18249922_SNP [dm3] 2L_18249922_SNP [dm6]	A	C	5.616e^-6	0.031	INTRON CG42750
2L	18261199	2L_18261199_SNP [dm3] 2L_18261199_SNP [dm6]	T	C	5.616e^-6	0.031	INTRON CG42750 EXON CR44901
2L	18268020	2L_18268020_SNP [dm3] 2L_18268020_SNP [dm6]	C	A	5.616e^-6	0.031	INTRON CG42750
2L	6532646	2L_6532646_SNP [dm3] 2L_6532646_SNP [dm6]	T	G	5.616e^-6	0.031	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9511873	2L_9511873_SNP [dm3] 2L_9511873_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON CG33298	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10009845	2R_10009845_SNP [dm3] 2R_14122340_SNP [dm6]	G	T	5.616e^-6	0.031	INTRON Prosap
2R	10009867	2R_10009867_SNP [dm3] 2R_14122362_SNP [dm6]	T	C	5.616e^-6	0.031	INTRON Prosap
2R	10009930	2R_10009930_SNP [dm3] 2R_14122425_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON Prosap
2R	10010981	2R_10010981_SNP [dm3] 2R_14123476_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	10549668	2R_10549668_DEL [dm3] 2R_14662163_DEL [dm6]	TTC	T	5.616e^-6	0.031	INTERGENIC
2R	10679419	2R_10679419_SNP [dm3] 2R_14791914_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON kn
2R	11044189	2R_11044189_SNP [dm3] 2R_15156684_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON igl
2R	17966992	2R_17966992_SNP [dm3] 2R_22079487_SNP [dm6]	G	C	5.616e^-6	0.031	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18640946	2R_18640946_SNP [dm3] 2R_22753441_SNP [dm6]	G	T	5.616e^-6	0.031	INTRON CG42260
2R	18640963	2R_18640963_SNP [dm3] 2R_22753458_SNP [dm6]	A	G	5.616e^-6	0.031	INTRON CG42260
2R	18641463	2R_18641463_SNP [dm3] 2R_22753958_SNP [dm6]	A	G	5.616e^-6	0.031	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5427950	2R_5427950_SNP [dm3] 2R_9540445_SNP [dm6]	A	G	5.616e^-6	0.031	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl
2R	7378737	2R_7378737_SNP [dm3] 2R_11491232_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON inv
2R	7394846	2R_7394846_SNP [dm3] 2R_11507341_SNP [dm6]	C	T	5.616e^-6	0.031	UTR_3_PRIME inv DOWNSTREAM inv
2R	7487154	2R_7487154_SNP [dm3] 2R_11599649_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	10015536	3L_10015536_SNP [dm3] 3L_10022436_SNP [dm6]	G	C	5.616e^-6	0.031	INTRON dpr6
3L	10017022	3L_10017022_SNP [dm3] 3L_10023922_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON dpr6
3L	10018879	3L_10018879_SNP [dm3] 3L_10025779_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON dpr6
3L	10018987	3L_10018987_SNP [dm3] 3L_10025887_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON dpr6
3L	10019162	3L_10019162_SNP [dm3] 3L_10026062_SNP [dm6]	A	G	5.616e^-6	0.031	INTRON dpr6
3L	10019164	3L_10019164_SNP [dm3] 3L_10026064_SNP [dm6]	C	G	5.616e^-6	0.031	INTRON dpr6
3L	12240356	3L_12240356_SNP [dm3] 3L_12247256_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON app
3L	12240601	3L_12240601_SNP [dm3] 3L_12247501_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON app
3L	12240607	3L_12240607_SNP [dm3] 3L_12247507_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON app
3L	12240619	3L_12240619_INS [dm3] 3L_12247519_INS [dm6]	A	ATCA	5.616e^-6	0.031	INTRON app
3L	12240640	3L_12240640_SNP [dm3] 3L_12247540_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON app
3L	12631017	3L_12631017_SNP [dm3] 3L_12637917_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON CR32111
3L	16344708	3L_16344708_SNP [dm3] 3L_16351608_SNP [dm6]	C	T	5.616e^-6	0.031	NON_SYNONYMOUS_CODING CG4925 UPSTREAM CG4933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16876932	3L_16876932_SNP [dm3] 3L_16883832_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON Lmpt
3L	16879574	3L_16879574_SNP [dm3] 3L_16886474_SNP [dm6]	A	T	5.616e^-6	0.031	UPSTREAM Lmpt INTRON Lmpt
3L	17245390	3L_17245390_SNP [dm3] 3L_17252290_SNP [dm6]	A	C	5.616e^-6	0.031	DOWNSTREAM CG6497 INTRON CR43870
3L	1881192	3L_1881192_SNP [dm3] 3L_1881192_SNP [dm6]	G	A	5.616e^-6	0.031	SYNONYMOUS_CODING CG13937	TF binding site mE1_TFBS_chinmo
3L	1900065	3L_1900065_SNP [dm3] 3L_1900065_SNP [dm6]	A	T	5.616e^-6	0.031	DOWNSTREAM CG1887 INTRON CG1887
3L	2838317	3L_2838317_SNP [dm3] 3L_2838317_SNP [dm6]	T	G	5.616e^-6	0.031	INTRON CG43444
3L	2838321	3L_2838321_INS [dm3] 3L_2838321_INS [dm6]	A	AG	5.616e^-6	0.031	INTRON CG43444
3L	2885280	3L_2885280_SNP [dm3] 3L_2885280_SNP [dm6]	T	A	5.616e^-6	0.031	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2886800	3L_2886800_SNP [dm3] 3L_2886800_SNP [dm6]	G	C	5.616e^-6	0.031	NON_SYNONYMOUS_CODING spz5
3L	2888577	3L_2888577_SNP [dm3] 3L_2888577_SNP [dm6]	C	G	5.616e^-6	0.031	INTRON spz5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3221957	3L_3221957_SNP [dm3] 3L_3221957_SNP [dm6]	G	A	5.616e^-6	0.031	SYNONYMOUS_CODING RpL28 UPSTREAM snoRNA:Or-CD12 & 1 other DOWNSTREAM snoRNA:Or-CD11c & 2 others
3L	3511416	3L_3511416_SNP [dm3] 3L_3511416_SNP [dm6]	G	A	5.616e^-6	0.031	NON_SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3512504	3L_3512504_SNP [dm3] 3L_3512504_SNP [dm6]	G	A	5.616e^-6	0.031	SYNONYMOUS_CODING ImpE2	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	3653147	3L_3653147_SNP [dm3] 3L_3653147_SNP [dm6]	T	C	5.616e^-6	0.031	UTR_3_PRIME dar1 DOWNSTREAM CG10862
3L	3704143	3L_3704143_SNP [dm3] 3L_3704143_SNP [dm6]	C	T	5.616e^-6	0.031	INTERGENIC
3L	3888947	3L_3888947_SNP [dm3] 3L_3888947_SNP [dm6]	G	A	5.616e^-6	0.031	INTERGENIC
3L	7066307	3L_7066307_SNP [dm3] 3L_7073207_SNP [dm6]	A	C	5.616e^-6	0.031	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3L	7066318	3L_7066318_SNP [dm3] 3L_7073218_SNP [dm6]	T	C	5.616e^-6	0.031	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3L	7066371	3L_7066371_SNP [dm3] 3L_7073271_SNP [dm6]	G	A	5.616e^-6	0.031	DOWNSTREAM CG34030 INTRON CG8641
3L	7863178	3L_7863178_DEL [dm3] 3L_7870078_DEL [dm6]	AA	A	5.616e^-6	0.031	INTRON CG32365	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	7863181	3L_7863181_SNP [dm3] 3L_7870081_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON CG32365	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	7893810	3L_7893810_SNP [dm3] 3L_7900710_SNP [dm6]	G	A	5.616e^-6	0.031	SYNONYMOUS_CODING pbl INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7893843	3L_7893843_SNP [dm3] 3L_7900743_SNP [dm6]	T	C	5.616e^-6	0.031	SYNONYMOUS_CODING pbl INTRON pbl
3L	7908960	3L_7908960_SNP [dm3] 3L_7915860_SNP [dm6]	G	T	5.616e^-6	0.031	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7935690	3L_7935690_SNP [dm3] 3L_7942590_SNP [dm6]	T	A	5.616e^-6	0.031	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7937722	3L_7937722_SNP [dm3] 3L_7944622_SNP [dm6]	G	C	5.616e^-6	0.031	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7941057	3L_7941057_SNP [dm3] 3L_7947957_SNP [dm6]	T	A	5.616e^-6	0.031	UPSTREAM exex INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7941138	3L_7941138_SNP [dm3] 3L_7948038_SNP [dm6]	T	A	5.616e^-6	0.031	UPSTREAM exex INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9332404	3L_9332404_SNP [dm3] 3L_9339304_SNP [dm6]	A	T	5.616e^-6	0.031	DOWNSTREAM PGRP-LA INTRON PGRP-LC
3L	9332983	3L_9332983_SNP [dm3] 3L_9339883_SNP [dm6]	G	A	5.616e^-6	0.031	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site mE1_TFBS_Trl
3L	9653424	3L_9653424_SNP [dm3] 3L_9660324_SNP [dm6]	G	C	5.616e^-6	0.031	DOWNSTREAM CG33696 INTRON fry
3L	9879781	3L_9879781_SNP [dm3] 3L_9886681_SNP [dm6]	G	C	5.616e^-6	0.031	SYNONYMOUS_CODING Taf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12809560	3R_12809560_SNP [dm3] 3R_16983838_SNP [dm6]	C	T	5.616e^-6	0.031	NON_SYNONYMOUS_CODING CG18622	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2285865	3R_2285865_SNP [dm3] 3R_6460143_SNP [dm6]	T	A	5.616e^-6	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2790757	3R_2790757_SNP [dm3] 3R_6965035_SNP [dm6]	T	G	5.616e^-6	0.031	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2812017	3R_2812017_SNP [dm3] 3R_6986295_SNP [dm6]	A	C	5.616e^-6	0.031	INTRON Antp
3R	3080184	3R_3080184_SNP [dm3] 3R_7254462_SNP [dm6]	A	C	5.616e^-6	0.031	INTRON Gld
3R	3123437	3R_3123437_SNP [dm3] 3R_7297715_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON rn
3R	3125411	3R_3125411_SNP [dm3] 3R_7299689_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON rn
3R	3128111	3R_3128111_SNP [dm3] 3R_7302389_SNP [dm6]	T	A	5.616e^-6	0.031	UPSTREAM rn INTRON rn
3R	3128336	3R_3128336_SNP [dm3] 3R_7302614_SNP [dm6]	T	C	5.616e^-6	0.031	UPSTREAM rn INTRON rn
3R	3986260	3R_3986260_SNP [dm3] 3R_8160538_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON grn
3R	3986977	3R_3986977_SNP [dm3] 3R_8161255_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON grn
3R	4262124	3R_4262124_SNP [dm3] 3R_8436402_SNP [dm6]	T	C	5.616e^-6	0.031	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4954562	3R_4954562_SNP [dm3] 3R_9128840_SNP [dm6]	A	T	5.616e^-6	0.031	INTRON pum	TF binding site mE1_TFBS_Trl
3R	4957854	3R_4957854_SNP [dm3] 3R_9132132_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON pum	TF binding site mE1_TFBS_cad
3R	4958573	3R_4958573_SNP [dm3] 3R_9132851_SNP [dm6]	G	T	5.616e^-6	0.031	INTRON pum
3R	4960073	3R_4960073_SNP [dm3] 3R_9134351_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON pum
3R	9665344	3R_9665344_SNP [dm3] 3R_13839622_SNP [dm6]	C	T	5.616e^-6	0.031	NON_SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9742460	3R_9742460_SNP [dm3] 3R_13916738_SNP [dm6]	A	G	5.616e^-6	0.031	INTERGENIC
3R	9759987	3R_9759987_SNP [dm3] 3R_13934265_SNP [dm6]	C	T	5.616e^-6	0.031	INTERGENIC
X	10012022	X_10012022_SNP [dm3] X_10117989_SNP [dm6]	A	G	5.616e^-6	0.031	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12530548	X_12530548_SNP [dm3] X_12636515_SNP [dm6]	T	A	5.616e^-6	0.031	DOWNSTREAM mir-970 INTRON Tomosyn
X	12570360	X_12570360_SNP [dm3] X_12676327_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
X	12570376	X_12570376_SNP [dm3] X_12676343_SNP [dm6]	T	G	5.616e^-6	0.031	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
X	12713774	X_12713774_SNP [dm3] X_12819741_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON Pde9
X	1890198	X_1890198_SNP [dm3] X_1996165_SNP [dm6]	A	C	5.616e^-6	0.031	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1890662	X_1890662_SNP [dm3] X_1996629_SNP [dm6]	A	G	5.616e^-6	0.031	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1890674	X_1890674_SNP [dm3] X_1996641_SNP [dm6]	C	T	5.616e^-6	0.031	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1890872	X_1890872_DEL [dm3] X_1996839_DEL [dm6]	ACATGCACATATGTA...	A	5.616e^-6	0.031	INTRON Hr4
X	1890895	X_1890895_SNP [dm3] X_1996862_SNP [dm6]	T	C	5.616e^-6	0.031	INTRON Hr4
X	1891559	X_1891559_SNP [dm3] X_1997526_SNP [dm6]	G	A	5.616e^-6	0.031	INTRON Hr4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8947852	X_8947852_SNP [dm3] X_9053819_SNP [dm6]	T	C	5.616e^-6	0.031	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3L	18835375	3L_18835375_SNP [dm3] 3L_18842275_SNP [dm6]	C	A	5.836e^-6	0.032	UPSTREAM Indy INTRON Indy & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	23752887	3L_23752887_DEL [dm3] 3L_23759787_DEL [dm6]	GCTAAGCAAATCAGAATCTT...	G	5.857e^-6	0.032	INTERGENIC	transposable element FlyBase
2R	2413892	2R_2413892_SNP [dm3] 2R_6526387_SNP [dm6]	C	A	5.986e^-6	0.033	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med transposable element FlyBase
2L	20623179	2L_20623179_DEL [dm3] 2L_20623179_DEL [dm6]	AA	G	6.250e^-6	0.034	INTRON CR44909
X	2548752	X_2548752_DEL [dm3] X_2654719_DEL [dm6]	AAATTACTAA	A	6.293e^-6	0.034	INTRON sgg
X	6400079	X_6400079_SNP [dm3] X_6506046_SNP [dm6]	C	A	6.331e^-6	0.034	INTRON CG42340
2L	19819834	2L_19819834_SNP [dm3] 2L_19819834_SNP [dm6]	G	A	6.361e^-6	0.034	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	17636101	3L_17636101_SNP [dm3] 3L_17643001_SNP [dm6]	G	T	6.361e^-6	0.034	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3L	17699732	3L_17699732_SNP [dm3] 3L_17706632_SNP [dm6]	T	C	6.361e^-6	0.034	INTRON Ccn
3L	8808355	3L_8808355_SNP [dm3] 3L_8815255_SNP [dm6]	T	C	6.361e^-6	0.034	INTERGENIC
3R	3643826	3R_3643826_DEL [dm3] 3R_7818104_DEL [dm6]	ATTTGCTGCAA...	A	6.361e^-6	0.034	INTRON CG34384
3L	17625016	3L_17625016_SNP [dm3] 3L_17631916_SNP [dm6]	C	A	6.450e^-6	0.034	DOWNSTREAM CG7510 EXON CR44566
3L	17626903	3L_17626903_SNP [dm3] 3L_17633803_SNP [dm6]	C	T	6.450e^-6	0.034	NON_SYNONYMOUS_CODING CG7497 UPSTREAM CR44567
3L	17628727	3L_17628727_INS [dm3] 3L_17635627_INS [dm6]	T	GTG	6.450e^-6	0.034	INTRON CG7497
3L	17628755	3L_17628755_SNP [dm3] 3L_17635655_SNP [dm6]	T	A	6.450e^-6	0.034	INTRON CG7497
2R	18294312	2R_18294312_SNP [dm3] 2R_22406807_SNP [dm6]	G	C	6.910e^-6	0.034	INTRON CG6044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18294313	2R_18294313_SNP [dm3] 2R_22406808_SNP [dm6]	C	T	6.910e^-6	0.034	INTRON CG6044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15444211	2L_15444211_SNP [dm3] 2L_15444211_SNP [dm6]	C	T	7.014e^-6	0.034	INTERGENIC
3R	12640550	3R_12640550_SNP [dm3] 3R_16814828_SNP [dm6]	G	A	7.014e^-6	0.034	INTRON abd-A	regulatory region REDfly_CRMs
3L	1077795	3L_1077795_SNP [dm3] 3L_1077795_SNP [dm6]	T	G	7.035e^-6	0.034	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9806130	3L_9806130_DEL [dm3] 3L_9813030_DEL [dm6]	AATGAACACTACCTTACAA...	A	7.035e^-6	0.034	UPSTREAM CG43897 INTERGENIC
X	9208956	X_9208956_SNP [dm3] X_9314923_SNP [dm6]	T	C	7.035e^-6	0.034	EXON CR44534
3L	15160147	3L_15160147_SNP [dm3] 3L_15167047_SNP [dm6]	C	G	7.045e^-6	0.034	INTERGENIC
3L	1458433	3L_1458433_SNP [dm3] 3L_1458433_SNP [dm6]	C	G	7.076e^-6	0.034	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17583163	2L_17583163_SNP [dm3] 2L_17583163_SNP [dm6]	A	G	7.097e^-6	0.034	UPSTREAM CR45111 INTERGENIC
2L	15173682	2L_15173682_SNP [dm3] 2L_15173682_SNP [dm6]	C	A	7.143e^-6	0.034	INTRON CG4168
3L	9804483	3L_9804483_INS [dm3] 3L_9811383_INS [dm6]	G	GGG	7.207e^-6	0.034	INTERGENIC
2R	14770985	2R_14770985_SNP [dm3] 2R_18883480_SNP [dm6]	G	T	7.257e^-6	0.034	INTRON sano
3L	4012065	3L_4012065_SNP [dm3] 3L_4012065_SNP [dm6]	T	A	7.335e^-6	0.034	INTERGENIC
2R	4474240	2R_4474240_SNP [dm3] 2R_8586735_SNP [dm6]	A	T	7.370e^-6	0.034	INTERGENIC
3L	1078429	3L_1078429_SNP [dm3] 3L_1078429_SNP [dm6]	T	A	7.381e^-6	0.034	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13790116	2R_13790116_SNP [dm3] 2R_17902611_SNP [dm6]	A	G	7.424e^-6	0.034	INTRON Elk
3L	7800376	3L_7800376_SNP [dm3] 3L_7807276_SNP [dm6]	T	A	7.514e^-6	0.034	INTRON CG32369
3L	7800384	3L_7800384_SNP [dm3] 3L_7807284_SNP [dm6]	G	C	7.514e^-6	0.034	INTRON CG32369
2L	15385172	2L_15385172_SNP [dm3] 2L_15385172_SNP [dm6]	G	A	7.514e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13707067	2L_13707067_SNP [dm3] 2L_13707067_SNP [dm6]	G	A	7.615e^-6	0.034	INTRON CG31814
2L	19289440	2L_19289440_SNP [dm3] 2L_19289440_SNP [dm6]	G	A	7.615e^-6	0.034	INTERGENIC
2R	15656089	2R_15656089_SNP [dm3] 2R_19768584_SNP [dm6]	G	A	7.615e^-6	0.034	DOWNSTREAM Or56a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5984682	3L_5984682_SNP [dm3] 3L_5991582_SNP [dm6]	C	A	7.615e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7065109	3L_7065109_SNP [dm3] 3L_7072009_SNP [dm6]	G	A	7.615e^-6	0.034	INTRON CG8641
3L	8811410	3L_8811410_DEL [dm3] 3L_8818310_DEL [dm6]	AA	A	7.615e^-6	0.034	INTERGENIC
3R	11589333	3R_11589333_SNP [dm3] 3R_15763611_SNP [dm6]	C	T	7.615e^-6	0.034	DOWNSTREAM CG12784 INTERGENIC
3R	4011086	3R_4011086_SNP [dm3] 3R_8185364_SNP [dm6]	A	T	7.615e^-6	0.034	INTERGENIC
3R	4016095	3R_4016095_DEL [dm3] 3R_8190373_DEL [dm6]	TTGT	T	7.615e^-6	0.034	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	4949582	3R_4949582_SNP [dm3] 3R_9123860_SNP [dm6]	T	C	7.615e^-6	0.034	INTRON pum
3R	4958329	3R_4958329_SNP [dm3] 3R_9132607_SNP [dm6]	C	T	7.615e^-6	0.034	INTRON pum
3R	4960046	3R_4960046_INS [dm3] 3R_9134324_INS [dm6]	T	TAAT	7.615e^-6	0.034	INTRON pum
3R	9611760	3R_9611760_SNP [dm3] 3R_13786038_SNP [dm6]	C	G	7.615e^-6	0.034	DOWNSTREAM Dip-B EXON CR45590
X	1892033	X_1892033_SNP [dm3] X_1998000_SNP [dm6]	T	C	7.615e^-6	0.034	SYNONYMOUS_CODING Hr4	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7750823	2L_7750823_SNP [dm3] 2L_7750823_SNP [dm6]	G	A	7.646e^-6	0.034	INTERGENIC
2R	12573651	2R_12573651_SNP [dm3] 2R_16686146_SNP [dm6]	G	T	7.646e^-6	0.034	INTRON CG30463
2R	7471477	2R_7471477_SNP [dm3] 2R_11583972_SNP [dm6]	G	A	7.646e^-6	0.034	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14695816	3L_14695816_SNP [dm3] 3L_14702716_SNP [dm6]	T	A	7.646e^-6	0.034	INTRON ome
3L	14695826	3L_14695826_SNP [dm3] 3L_14702726_SNP [dm6]	G	A	7.646e^-6	0.034	INTRON ome
X	17338260	X_17338260_SNP [dm3] X_17444227_SNP [dm6]	G	A	7.646e^-6	0.034	UPSTREAM CG12994 INTERGENIC
X	19125045	X_19125045_SNP [dm3] X_19231012_SNP [dm6]	G	A	7.646e^-6	0.034	INTRON CG7884
X	19125647	X_19125647_SNP [dm3] X_19231614_SNP [dm6]	C	G	7.646e^-6	0.034	INTRON CG7884
X	19127628	X_19127628_SNP [dm3] X_19233595_SNP [dm6]	C	T	7.646e^-6	0.034	NON_SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	19129250	X_19129250_SNP [dm3] X_19235217_SNP [dm6]	C	T	7.646e^-6	0.034	UTR_3_PRIME CG7884 DOWNSTREAM CG14196 INTRON CG7884	TF binding site mE1_TFBS_chinmo
X	19135675	X_19135675_INS [dm3] X_19241642_INS [dm6]	G	GGGTGGGGGGT...	7.646e^-6	0.034	UTR_5_PRIME CG14196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19137238	X_19137238_SNP [dm3] X_19243205_SNP [dm6]	G	A	7.646e^-6	0.034	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	19137251	X_19137251_SNP [dm3] X_19243218_SNP [dm6]	A	C	7.646e^-6	0.034	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	19137300	X_19137300_SNP [dm3] X_19243267_SNP [dm6]	G	T	7.646e^-6	0.034	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	19138745	X_19138745_SNP [dm3] X_19244712_SNP [dm6]	C	T	7.646e^-6	0.034	DOWNSTREAM CG7992 INTRON CG7889	TF binding site mE1_TFBS_chinmo
X	19138783	X_19138783_SNP [dm3] X_19244750_SNP [dm6]	G	C	7.646e^-6	0.034	SYNONYMOUS_CODING CG7889 DOWNSTREAM CG7992
X	4260638	X_4260638_SNP [dm3] X_4366605_SNP [dm6]	G	A	7.646e^-6	0.034	SYNONYMOUS_CODING CG3626 UPSTREAM mir-982 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_kn mE1_TFBS_sens
3L	7772792	3L_7772792_SNP [dm3] 3L_7779692_SNP [dm6]	C	T	7.647e^-6	0.034	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12116291	X_12116291_SNP [dm3] X_12222258_SNP [dm6]	C	T	7.660e^-6	0.034	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11086319	3L_11086319_SNP [dm3] 3L_11093219_SNP [dm6]	C	T	7.820e^-6	0.034	UPSTREAM JIL-1 DOWNSTREAM CG6279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1746985	3L_1746985_SNP [dm3] 3L_1746985_SNP [dm6]	C	T	7.889e^-6	0.034	UTR_5_PRIME CG13921	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9725180	3R_9725180_SNP [dm3] 3R_13899458_SNP [dm6]	A	T	7.907e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	16338137	2R_16338137_SNP [dm3] 2R_20450632_SNP [dm6]	C	A	7.936e^-6	0.034	INTRON CG12484
3L	10015854	3L_10015854_SNP [dm3] 3L_10022754_SNP [dm6]	G	T	7.936e^-6	0.034	INTRON dpr6
3L	10019044	3L_10019044_SNP [dm3] 3L_10025944_SNP [dm6]	G	T	7.936e^-6	0.034	INTRON dpr6
3R	3832481	3R_3832481_SNP [dm3] 3R_8006759_SNP [dm6]	T	C	7.981e^-6	0.034	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
3L	12848873	3L_12848873_SNP [dm3] 3L_12855773_SNP [dm6]	C	T	8.108e^-6	0.034	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10009833	2R_10009833_SNP [dm3] 2R_14122328_SNP [dm6]	G	A	8.249e^-6	0.034	INTRON Prosap
2R	962039	2R_962039_SNP [dm3] 2R_5074534_SNP [dm6]	A	T	8.249e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	983525	2R_983525_DEL [dm3] 2R_5096020_DEL [dm6]	ACG	A	8.249e^-6	0.034	DOWNSTREAM CG3107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	19484550	2R_19484550_SNP [dm3] 2R_23597027_SNP [dm6]	A	C	8.271e^-6	0.034	INTRON apt	TF binding site mE1_TFBS_sens
2L	18186601	2L_18186601_SNP [dm3] 2L_18186601_SNP [dm6]	C	T	8.283e^-6	0.034	UPSTREAM CR44900 INTRON CG42750
2R	18896094	2R_18896094_DEL [dm3] 2R_23008571_DEL [dm6]	GGCCAAGCGAAG...	G	8.283e^-6	0.034	INTRON twi	TF binding site mE1_TFBS_chinmo
3L	17626776	3L_17626776_SNP [dm3] 3L_17633676_SNP [dm6]	T	C	8.283e^-6	0.034	UTR_5_PRIME CG7497 UPSTREAM CR44567
3L	17633778	3L_17633778_SNP [dm3] 3L_17640678_SNP [dm6]	T	C	8.283e^-6	0.034	INTRON Pep
3L	17635829	3L_17635829_SNP [dm3] 3L_17642729_SNP [dm6]	T	A	8.283e^-6	0.034	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3L	17637704	3L_17637704_INS [dm3] 3L_17644604_INS [dm6]	T	TTAGTCTA	8.283e^-6	0.034	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17644125	3L_17644125_DEL [dm3] 3L_17651025_DEL [dm6]	CTTGTTATAAAC...	C	8.283e^-6	0.034	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	17645087	3L_17645087_SNP [dm3] 3L_17651987_SNP [dm6]	A	G	8.283e^-6	0.034	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17718416	3L_17718416_SNP [dm3] 3L_17725316_SNP [dm6]	G	C	8.283e^-6	0.034	NON_SYNONYMOUS_CODING CG6052 INTRON Ccn
X	6765209	X_6765209_SNP [dm3] X_6871176_SNP [dm6]	C	G	8.412e^-6	0.034	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9043571	2L_9043571_SNP [dm3] 2L_9043571_SNP [dm6]	G	T	8.536e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20560421	3R_20560421_SNP [dm3] 3R_24734699_SNP [dm6]	T	C	8.615e^-6	0.034	INTRON tok
X	15669706	X_15669706_SNP [dm3] X_15775673_SNP [dm6]	C	T	8.617e^-6	0.034	SYNONYMOUS_CODING CG43672
3R	4445901	3R_4445901_SNP [dm3] 3R_8620179_SNP [dm6]	C	A	8.658e^-6	0.034	INTRON 5-HT2B
X	15026208	X_15026208_SNP [dm3] X_15132175_SNP [dm6]	G	A	8.658e^-6	0.034	INTRON drd
2L	18239300	2L_18239300_SNP [dm3] 2L_18239300_SNP [dm6]	T	A	8.743e^-6	0.034	INTRON CG42750
2L	18245815	2L_18245815_SNP [dm3] 2L_18245815_SNP [dm6]	G	A	8.743e^-6	0.034	INTRON CG42750
2L	18263855	2L_18263855_SNP [dm3] 2L_18263855_SNP [dm6]	G	T	8.743e^-6	0.034	INTRON CG42750
2L	18264250	2L_18264250_SNP [dm3] 2L_18264250_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON CG42750
2L	18265499	2L_18265499_SNP [dm3] 2L_18265499_SNP [dm6]	G	A	8.743e^-6	0.034	INTRON CG42750
2L	19854082	2L_19854082_SNP [dm3] 2L_19854082_SNP [dm6]	C	A	8.743e^-6	0.034	INTRON sick
2L	8043207	2L_8043207_SNP [dm3] 2L_8043207_SNP [dm6]	T	G	8.743e^-6	0.034	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043295	2L_8043295_SNP [dm3] 2L_8043295_SNP [dm6]	T	C	8.743e^-6	0.034	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9513326	2L_9513326_SNP [dm3] 2L_9513326_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON CG33298
2R	10324470	2R_10324470_SNP [dm3] 2R_14436965_SNP [dm6]	T	C	8.743e^-6	0.034	INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	18640349	2R_18640349_SNP [dm3] 2R_22752844_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON CG42260
2R	8931006	2R_8931006_SNP [dm3] 2R_13043501_SNP [dm6]	T	A	8.743e^-6	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h
3L	12941884	3L_12941884_SNP [dm3] 3L_12948784_SNP [dm6]	G	A	8.743e^-6	0.034	INTERGENIC
3L	16878620	3L_16878620_INS [dm3] 3L_16885520_INS [dm6]	T	TT	8.743e^-6	0.034	INTRON Lmpt
3L	16878663	3L_16878663_SNP [dm3] 3L_16885563_SNP [dm6]	T	C	8.743e^-6	0.034	INTRON Lmpt
3L	17641100	3L_17641100_SNP [dm3] 3L_17648000_SNP [dm6]	G	A	8.743e^-6	0.034	UTR_3_PRIME Ndfip
3L	17717093	3L_17717093_SNP [dm3] 3L_17723993_SNP [dm6]	G	A	8.743e^-6	0.034	INTRON Ccn & 1 other
3L	2887333	3L_2887333_SNP [dm3] 3L_2887333_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON spz5
3L	7065772	3L_7065772_SNP [dm3] 3L_7072672_SNP [dm6]	G	A	8.743e^-6	0.034	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3L	7065827	3L_7065827_SNP [dm3] 3L_7072727_SNP [dm6]	C	A	8.743e^-6	0.034	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3L	7868899	3L_7868899_SNP [dm3] 3L_7875799_SNP [dm6]	T	A	8.743e^-6	0.034	INTRON CG32365	TF binding site mE1_TFBS_kn
3L	7868917	3L_7868917_SNP [dm3] 3L_7875817_SNP [dm6]	A	T	8.743e^-6	0.034	INTRON CG32365
3L	7869997	3L_7869997_SNP [dm3] 3L_7876897_SNP [dm6]	A	C	8.743e^-6	0.034	INTRON CG32365	TF binding site mE1_TFBS_inv
3L	7870460	3L_7870460_SNP [dm3] 3L_7877360_SNP [dm6]	G	C	8.743e^-6	0.034	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7899349	3L_7899349_SNP [dm3] 3L_7906249_SNP [dm6]	A	T	8.743e^-6	0.034	INTRON pbl
3L	7924798	3L_7924798_SNP [dm3] 3L_7931698_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7937774	3L_7937774_SNP [dm3] 3L_7944674_SNP [dm6]	T	G	8.743e^-6	0.034	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8116407	3L_8116407_SNP [dm3] 3L_8123307_SNP [dm6]	G	T	8.743e^-6	0.034	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM CG7550	TF binding site mE1_TFBS_sens
3R	3991328	3R_3991328_SNP [dm3] 3R_8165606_SNP [dm6]	G	T	8.743e^-6	0.034	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4164793	3R_4164793_SNP [dm3] 3R_8339071_SNP [dm6]	G	A	8.743e^-6	0.034	DOWNSTREAM CG9603 INTERGENIC
3R	4953240	3R_4953240_SNP [dm3] 3R_9127518_SNP [dm6]	G	A	8.743e^-6	0.034	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4961535	3R_4961535_SNP [dm3] 3R_9135813_SNP [dm6]	C	T	8.743e^-6	0.034	INTRON pum
3R	9659232	3R_9659232_SNP [dm3] 3R_13833510_SNP [dm6]	T	C	8.743e^-6	0.034	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	9660615	3R_9660615_SNP [dm3] 3R_13834893_SNP [dm6]	A	C	8.743e^-6	0.034	SYNONYMOUS_CODING Nsf2
3R	9742558	3R_9742558_DEL [dm3] 3R_13916836_DEL [dm6]	GCCCTTAG	G	8.743e^-6	0.034	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9767959	3R_9767959_SNP [dm3] 3R_13942237_SNP [dm6]	T	C	8.743e^-6	0.034	DOWNSTREAM Art9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9768370	3R_9768370_SNP [dm3] 3R_13942648_SNP [dm6]	A	G	8.743e^-6	0.034	SYNONYMOUS_CODING Art9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10194358	X_10194358_SNP [dm3] X_10300325_SNP [dm6]	A	T	8.743e^-6	0.034	INTRON alpha-Man-I
X	2379093	X_2379093_DEL [dm3] X_2485060_DEL [dm6]	GGTTTA	CAGCC	8.743e^-6	0.034	INTRON trol
X	2379276	X_2379276_SNP [dm3] X_2485243_SNP [dm6]	A	G	8.743e^-6	0.034	INTRON trol
3L	1380712	3L_1380712_SNP [dm3] 3L_1380712_SNP [dm6]	G	A	8.954e^-6	0.035	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
2L	20623189	2L_20623189_SNP [dm3] 2L_20623189_SNP [dm6]	C	G	9.132e^-6	0.036	INTRON CR44909
2R	3923769	2R_3923769_SNP [dm3] 2R_8036264_SNP [dm6]	A	C	9.154e^-6	0.036	INTRON Optix
2L	1399312	2L_1399312_SNP [dm3] 2L_1399312_SNP [dm6]	A	G	9.161e^-6	0.036	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4356559	2L_4356559_SNP [dm3] 2L_4356559_SNP [dm6]	C	G	9.276e^-6	0.036	INTERGENIC
2L	4356560	2L_4356560_INS [dm3] 2L_4356560_INS [dm6]	T	TTTACTG	9.276e^-6	0.036	INTERGENIC
2L	9945348	2L_9945348_SNP [dm3] 2L_9945348_SNP [dm6]	G	A	9.276e^-6	0.036	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9207558	3L_9207558_SNP [dm3] 3L_9214458_SNP [dm6]	C	A	9.276e^-6	0.036	SYNONYMOUS_CODING CG4476
3R	7891702	3R_7891702_SNP [dm3] 3R_12065980_SNP [dm6]	A	T	9.276e^-6	0.036	INTERGENIC
3R	7891754	3R_7891754_SNP [dm3] 3R_12066032_SNP [dm6]	A	T	9.276e^-6	0.036	INTERGENIC
3R	7891768	3R_7891768_SNP [dm3] 3R_12066046_SNP [dm6]	G	A	9.276e^-6	0.036	INTERGENIC
3R	9736318	3R_9736318_SNP [dm3] 3R_13910596_SNP [dm6]	C	A	9.502e^-6	0.036	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14902917	3L_14902917_SNP [dm3] 3L_14909817_SNP [dm6]	A	T	9.619e^-6	0.037	INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	14902918	3L_14902918_SNP [dm3] 3L_14909818_SNP [dm6]	T	A	9.619e^-6	0.037	INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	16691025	3L_16691025_SNP [dm3] 3L_16697925_SNP [dm6]	G	A	9.716e^-6	0.037	DOWNSTREAM CR45179 INTRON Lasp & 1 other
2L	15031534	2L_15031534_SNP [dm3] 2L_15031534_SNP [dm6]	G	A	9.721e^-6	0.037	SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3L	14873869	3L_14873869_SNP [dm3] 3L_14880769_SNP [dm6]	T	C	1.026e^-5	0.039	SYNONYMOUS_CODING CG17839
X	19137252	X_19137252_SNP [dm3] X_19243219_SNP [dm6]	A	G	1.026e^-5	0.039	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5286515	2R_5286515_SNP [dm3] 2R_9399010_SNP [dm6]	C	T	1.027e^-5	0.039	UPSTREAM l_2_k10201 & 1 other DOWNSTREAM CG33774 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	7065686	3L_7065686_SNP [dm3] 3L_7072586_SNP [dm6]	G	T	1.027e^-5	0.039	DOWNSTREAM CG34030 INTRON CG8641
3R	9615113	3R_9615113_SNP [dm3] 3R_13789391_SNP [dm6]	A	G	1.027e^-5	0.039	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6445929	2L_6445929_SNP [dm3] 2L_6445929_SNP [dm6]	T	A	1.039e^-5	0.039	NON_SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad
2R	18316429	2R_18316429_SNP [dm3] 2R_22428924_SNP [dm6]	G	T	1.044e^-5	0.039	SYNONYMOUS_CODING ppk12
3R	9620060	3R_9620060_SNP [dm3] 3R_13794338_SNP [dm6]	C	T	1.044e^-5	0.039	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4349209	2R_4349209_SNP [dm3] 2R_8461704_SNP [dm6]	C	A	1.053e^-5	0.039	DOWNSTREAM Mal-A4 INTERGENIC	transposable element FlyBase
3L	1080501	3L_1080501_SNP [dm3] 3L_1080501_SNP [dm6]	C	T	1.056e^-5	0.039	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8043037	2L_8043037_DEL [dm3] 2L_8043037_DEL [dm6]	AACTTAGTACAGAA...	A	1.059e^-5	0.039	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043126	2L_8043126_SNP [dm3] 2L_8043126_SNP [dm6]	T	C	1.059e^-5	0.039	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043144	2L_8043144_INS [dm3] 2L_8043144_INS [dm6]	A	AA	1.059e^-5	0.039	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7773174	3L_7773174_SNP [dm3] 3L_7780074_SNP [dm6]	C	T	1.063e^-5	0.039	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
X	8131274	X_8131274_SNP [dm3] X_8237241_SNP [dm6]	A	G	1.081e^-5	0.04	SYNONYMOUS_CODING sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9608605	2L_9608605_SNP [dm3] 2L_9608605_SNP [dm6]	C	T	1.083e^-5	0.04	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18833032	2R_18833032_DEL [dm3] 2R_22945509_DEL [dm6]	TTGCAGAT	T	1.083e^-5	0.04	DOWNSTREAM CG42694 INTERGENIC
3R	15137382	3R_15137382_DEL [dm3] 3R_19311660_DEL [dm6]	AGTTAGTC	A	1.083e^-5	0.04	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6680110	3L_6680110_INS [dm3] 3L_6687010_INS [dm6]	T	TT	1.138e^-5	0.042	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3974982	2R_3974982_DEL [dm3] 2R_8087477_DEL [dm6]	TA	T	1.138e^-5	0.042	DOWNSTREAM sut1 INTRON sut2
2R	17065665	2R_17065665_SNP [dm3] 2R_21178160_SNP [dm6]	A	C	1.142e^-5	0.042	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17650391	3L_17650391_SNP [dm3] 3L_17657291_SNP [dm6]	T	A	1.156e^-5	0.042	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	18152956	2L_18152956_SNP [dm3] 2L_18152956_SNP [dm6]	A	T	1.158e^-5	0.042	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	18171205	2L_18171205_INS [dm3] 2L_18171205_INS [dm6]	A	AAACGT	1.158e^-5	0.042	INTRON CG42750
3L	18835922	3L_18835922_SNP [dm3] 3L_18842822_SNP [dm6]	T	C	1.166e^-5	0.042	DOWNSTREAM CR32027 INTRON Indy	TF binding site BDTNP1_TFBS_da
X	8988504	X_8988504_SNP [dm3] X_9094471_SNP [dm6]	G	T	1.169e^-5	0.042	NON_SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7402580	2L_7402580_SNP [dm3] 2L_7402580_SNP [dm6]	G	T	1.183e^-5	0.042	UPSTREAM CG5171 INTRON CG5171
3R	3985032	3R_3985032_DEL [dm3] 3R_8159310_DEL [dm6]	AA	A	1.183e^-5	0.042	INTRON grn
3R	4019923	3R_4019923_DEL [dm3] 3R_8194201_DEL [dm6]	AG	C	1.183e^-5	0.042	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
3R	9615131	3R_9615131_SNP [dm3] 3R_13789409_SNP [dm6]	A	G	1.183e^-5	0.042	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12507481	X_12507481_SNP [dm3] X_12613448_SNP [dm6]	A	G	1.197e^-5	0.043	DOWNSTREAM CR45621 INTRON CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9738138	3R_9738138_SNP [dm3] 3R_13912416_SNP [dm6]	A	G	1.200e^-5	0.043	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9513910	2L_9513910_SNP [dm3] 2L_9513910_SNP [dm6]	G	T	1.231e^-5	0.044	INTRON CG33298
3R	3868804	3R_3868804_SNP [dm3] 3R_8043082_SNP [dm6]	C	A	1.231e^-5	0.044	INTRON CG43060	transposable element FlyBase
2L	7950494	2L_7950494_SNP [dm3] 2L_7950494_SNP [dm6]	A	G	1.231e^-5	0.044	INTRON Snoo
X	11563707	X_11563707_SNP [dm3] X_11669674_SNP [dm6]	C	T	1.235e^-5	0.044	SYNONYMOUS_CODING Ptp10D
X	11563734	X_11563734_SNP [dm3] X_11669701_SNP [dm6]	A	G	1.235e^-5	0.044	SYNONYMOUS_CODING Ptp10D
X	13652149	X_13652149_SNP [dm3] X_13758116_SNP [dm6]	A	C	1.257e^-5	0.044	INTRON Rtc1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1693784	2L_1693784_INS [dm3] 2L_1693784_INS [dm6]	G	GGCCAAG	1.312e^-5	0.046	INTRON chinmo
2L	4356594	2L_4356594_SNP [dm3] 2L_4356594_SNP [dm6]	C	T	1.312e^-5	0.046	INTERGENIC
3L	7711548	3L_7711548_SNP [dm3] 3L_7718448_SNP [dm6]	G	T	1.325e^-5	0.046	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	7711779	3L_7711779_SNP [dm3] 3L_7718679_SNP [dm6]	T	C	1.325e^-5	0.046	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	7711910	3L_7711910_SNP [dm3] 3L_7718810_SNP [dm6]	C	A	1.325e^-5	0.046	UPSTREAM CG12262 & 1 other INTRON CG32373
2L	13975383	2L_13975383_SNP [dm3] 2L_13975383_SNP [dm6]	C	T	1.327e^-5	0.046	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8850475	2R_8850475_SNP [dm3] 2R_12962970_SNP [dm6]	G	A	1.332e^-5	0.046	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1746111	3L_1746111_SNP [dm3] 3L_1746111_SNP [dm6]	A	C	1.342e^-5	0.047	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
X	9634230	X_9634230_SNP [dm3] X_9740197_SNP [dm6]	C	T	1.362e^-5	0.047	INTRON Sp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15317530	2R_15317530_SNP [dm3] 2R_19430025_SNP [dm6]	T	C	1.372e^-5	0.047	SYNONYMOUS_CODING CalpA DOWNSTREAM CalpA & 1 other
3L	1456122	3L_1456122_SNP [dm3] 3L_1456122_SNP [dm6]	G	A	1.372e^-5	0.047	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	7066205	3L_7066205_SNP [dm3] 3L_7073105_SNP [dm6]	G	A	1.372e^-5	0.047	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3R	3991429	3R_3991429_SNP [dm3] 3R_8165707_SNP [dm6]	C	T	1.372e^-5	0.047	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13362551	2L_13362551_SNP [dm3] 2L_13362551_SNP [dm6]	C	T	1.394e^-5	0.048	UPSTREAM CG9377 DOWNSTREAM Nnp-1 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	11194066	3R_11194066_SNP [dm3] 3R_15368344_SNP [dm6]	G	A	1.397e^-5	0.048	SYNONYMOUS_CODING CG14868 UPSTREAM CG34404	TF binding site mE1_TFBS_cad
2R	4192915	2R_4192915_SNP [dm3] 2R_8305410_SNP [dm6]	A	T	1.438e^-5	0.049	DOWNSTREAM CR44447 INTERGENIC
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	1.442e^-5	0.049	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	17930275	2R_17930275_SNP [dm3] 2R_22042770_SNP [dm6]	A	T	1.443e^-5	0.049	SYNONYMOUS_CODING PpD5
3R	4265596	3R_4265596_SNP [dm3] 3R_8439874_SNP [dm6]	T	G	1.454e^-5	0.049	INTRON CG45263
3R	9620061	3R_9620061_SNP [dm3] 3R_13794339_SNP [dm6]	G	T	1.454e^-5	0.049	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14875799	3L_14875799_SNP [dm3] 3L_14882699_SNP [dm6]	G	C	1.458e^-5	0.049	DOWNSTREAM CG17839 INTERGENIC
3L	3355033	3L_3355033_SNP [dm3] 3L_3355033_SNP [dm6]	G	C	1.458e^-5	0.049	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9768093	3R_9768093_SNP [dm3] 3R_13942371_SNP [dm6]	T	A	1.458e^-5	0.049	NON_SYNONYMOUS_CODING Art9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19126772	X_19126772_SNP [dm3] X_19232739_SNP [dm6]	T	A	1.458e^-5	0.049	NON_SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	2867454	X_2867454_SNP [dm3] X_2973421_SNP [dm6]	T	A	1.458e^-5	0.049	UTR_5_PRIME rst INTRON kirre	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	13790065	2R_13790065_SNP [dm3] 2R_17902560_SNP [dm6]	C	T	1.459e^-5	0.049	INTRON Elk
2R	6328848	2R_6328848_SNP [dm3] 2R_10441343_SNP [dm6]	G	C	1.465e^-5	0.049	INTRON Galphao	TF binding site mE1_TFBS_cad
3L	2791103	3L_2791103_SNP [dm3] 3L_2791103_SNP [dm6]	A	G	1.521e^-5	0.051	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11919216	3L_11919216_SNP [dm3] 3L_11926116_SNP [dm6]	T	A	1.531e^-5	0.051	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7891772	3R_7891772_SNP [dm3] 3R_12066050_SNP [dm6]	G	C	1.531e^-5	0.051	INTERGENIC
3R	7891773	3R_7891773_SNP [dm3] 3R_12066051_SNP [dm6]	G	T	1.531e^-5	0.051	INTERGENIC
3L	1080371	3L_1080371_SNP [dm3] 3L_1080371_SNP [dm6]	C	T	1.532e^-5	0.051	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7711778	3L_7711778_SNP [dm3] 3L_7718678_SNP [dm6]	A	G	1.534e^-5	0.051	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	7711794	3L_7711794_INS [dm3] 3L_7718694_INS [dm6]	A	AATATATTACAAATAATATT...	1.534e^-5	0.051	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	7772801	3L_7772801_SNP [dm3] 3L_7779701_SNP [dm6]	G	C	1.537e^-5	0.051	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17875594	2L_17875594_SNP [dm3] 2L_17875594_SNP [dm6]	G	A	1.547e^-5	0.051	UPSTREAM CadN2 INTERGENIC
3L	7711543	3L_7711543_INS [dm3] 3L_7718443_INS [dm6]	G	GA	1.547e^-5	0.051	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	11086322	3L_11086322_SNP [dm3] 3L_11093222_SNP [dm6]	G	A	1.550e^-5	0.051	UPSTREAM JIL-1 DOWNSTREAM CG6279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	3005072	2R_3005072_SNP [dm3] 2R_7117567_SNP [dm6]	A	C	1.588e^-5	0.052	INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18464877	2R_18464877_INS [dm3] 2R_22577372_INS [dm6]	T	TTT	1.590e^-5	0.052	INTRON dnr1
3L	7711790	3L_7711790_SNP [dm3] 3L_7718690_SNP [dm6]	C	T	1.600e^-5	0.052	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	3884785	3L_3884785_SNP [dm3] 3L_3884785_SNP [dm6]	A	G	1.607e^-5	0.052	EXON CR43917
2L	18253149	2L_18253149_SNP [dm3] 2L_18253149_SNP [dm6]	A	T	1.611e^-5	0.052	DOWNSTREAM CG43406 INTRON CG42750
3L	17585837	3L_17585837_SNP [dm3] 3L_17592737_SNP [dm6]	G	C	1.611e^-5	0.052	INTRON Eip74EF
3L	17597850	3L_17597850_SNP [dm3] 3L_17604750_SNP [dm6]	A	G	1.611e^-5	0.052	INTRON Eip74EF
2L	10218265	2L_10218265_SNP [dm3] 2L_10218265_SNP [dm6]	A	G	1.621e^-5	0.052	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA
X	15596106	X_15596106_SNP [dm3] X_15702073_SNP [dm6]	G	T	1.642e^-5	0.053	SYNONYMOUS_CODING Pis UTR_3_PRIME Pis UPSTREAM CG9240
3L	4012117	3L_4012117_SNP [dm3] 3L_4012117_SNP [dm6]	C	T	1.643e^-5	0.053	INTERGENIC
2R	2866416	2R_2866416_SNP [dm3] 2R_6978911_SNP [dm6]	C	A	1.646e^-5	0.053	UPSTREAM CR44170 INTRON vimar
4	890054	4_890054_DEL [dm3] 4_869428_DEL [dm6]	TT	T	1.656e^-5	0.053	UTR_3_PRIME unc-13 EXON CR43425
3L	1079223	3L_1079223_SNP [dm3] 3L_1079223_SNP [dm6]	T	C	1.676e^-5	0.054	INTRON bab1
2R	13472446	2R_13472446_SNP [dm3] 2R_17584941_SNP [dm6]	C	A	1.690e^-5	0.054	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
3L	17643154	3L_17643154_SNP [dm3] 3L_17650054_SNP [dm6]	G	C	1.690e^-5	0.054	NON_SYNONYMOUS_CODING Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15213694	3L_15213694_SNP [dm3] 3L_15220594_SNP [dm6]	T	C	1.692e^-5	0.054	INTERGENIC
3L	1194165	3L_1194165_DEL [dm3] 3L_1194165_DEL [dm6]	TT	T	1.694e^-5	0.054	UPSTREAM Trh DOWNSTREAM LysX INTERGENIC
2L	9517072	2L_9517072_DEL [dm3] 2L_9517072_DEL [dm6]	AT	A	1.697e^-5	0.054	INTRON CG33298
3R	15400814	3R_15400814_DEL [dm3] 3R_19575092_DEL [dm6]	CA	G	1.702e^-5	0.054	INTRON Dys
2L	16217681	2L_16217681_SNP [dm3] 2L_16217681_SNP [dm6]	G	T	1.718e^-5	0.054	UPSTREAM CR43840 INTERGENIC
2L	9513764	2L_9513764_SNP [dm3] 2L_9513764_SNP [dm6]	A	C	1.718e^-5	0.054	INTRON CG33298
3R	15135928	3R_15135928_SNP [dm3] 3R_19310206_SNP [dm6]	G	A	1.718e^-5	0.054	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4209472	3R_4209472_SNP [dm3] 3R_8383750_SNP [dm6]	T	C	1.718e^-5	0.054	UTR_3_PRIME CG45263 INTRON CG45263
2R	7129375	2R_7129375_SNP [dm3] 2R_11241870_SNP [dm6]	A	C	1.743e^-5	0.055	SYNONYMOUS_CODING Listericin
2R	3006339	2R_3006339_SNP [dm3] 2R_7118834_SNP [dm6]	G	C	1.754e^-5	0.055	SYNONYMOUS_CODING esn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1085854	3L_1085854_INS [dm3] 3L_1085854_INS [dm6]	C	CATC	1.770e^-5	0.056	INTRON bab1
3R	3970541	3R_3970541_SNP [dm3] 3R_8144819_SNP [dm6]	C	A	1.786e^-5	0.056	INTERGENIC
2L	20623176	2L_20623176_SNP [dm3] 2L_20623176_SNP [dm6]	G	A	1.808e^-5	0.057	INTRON CR44909
2R	18734944	2R_18734944_SNP [dm3] 2R_22847421_SNP [dm6]	C	T	1.828e^-5	0.057	SYNONYMOUS_CODING CG3649 DOWNSTREAM CG13531	TF binding site mE1_TFBS_cad
3L	6823393	3L_6823393_DEL [dm3] 3L_6830293_DEL [dm6]	TT	T	1.836e^-5	0.057	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	12420588	2L_12420588_DEL [dm3] 2L_12420588_DEL [dm6]	ATAATTAA	A	1.839e^-5	0.057	INTRON vir-1
3L	7066195	3L_7066195_SNP [dm3] 3L_7073095_SNP [dm6]	G	C	1.844e^-5	0.057	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
2L	18153075	2L_18153075_SNP [dm3] 2L_18153075_SNP [dm6]	T	C	1.918e^-5	0.059	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10784824	3L_10784824_SNP [dm3] 3L_10791724_SNP [dm6]	A	T	1.922e^-5	0.059	INTERGENIC
2R	5830450	2R_5830450_SNP [dm3] 2R_9942945_SNP [dm6]	G	T	1.940e^-5	0.06	UTR_5_PRIME Mef2 INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18931556	3L_18931556_SNP [dm3] 3L_18938456_SNP [dm6]	A	G	1.954e^-5	0.06	INTRON CG32204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19126865	X_19126865_SNP [dm3] X_19232832_SNP [dm6]	G	A	1.954e^-5	0.06	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12865777	3L_12865777_SNP [dm3] 3L_12872677_SNP [dm6]	A	G	2.002e^-5	0.062	INTERGENIC
2L	3573750	2L_3573750_SNP [dm3] 2L_3573750_SNP [dm6]	C	T	2.005e^-5	0.062	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15669780	X_15669780_SNP [dm3] X_15775747_SNP [dm6]	G	C	2.011e^-5	0.062	NON_SYNONYMOUS_CODING CG43672
2R	2863853	2R_2863853_SNP [dm3] 2R_6976348_SNP [dm6]	G	A	2.028e^-5	0.062	UTR_3_PRIME vimar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6603033	2L_6603033_SNP [dm3] 2L_6603033_SNP [dm6]	G	A	2.033e^-5	0.062	INTERGENIC
2L	19317949	2L_19317949_SNP [dm3] 2L_19317949_SNP [dm6]	G	T	2.034e^-5	0.062	INTERGENIC
X	10021715	X_10021715_SNP [dm3] X_10127682_SNP [dm6]	G	A	2.034e^-5	0.062	INTRON CR44894 & 1 other
2L	17558156	2L_17558156_SNP [dm3] 2L_17558156_SNP [dm6]	C	A	2.036e^-5	0.062	INTERGENIC
3L	1744010	3L_1744010_SNP [dm3] 3L_1744010_SNP [dm6]	G	C	2.083e^-5	0.063	NON_SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17781896	3L_17781896_INS [dm3] 3L_17788796_INS [dm6]	T	TTGTAGTGTATCTACCCTCA...	2.091e^-5	0.063	INTERGENIC
2R	4545486	2R_4545486_SNP [dm3] 2R_8657981_SNP [dm6]	G	A	2.097e^-5	0.063	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	10353025	X_10353025_DEL [dm3] X_10458992_DEL [dm6]	ATGTATGTTA	G	2.108e^-5	0.064	INTRON Or9a
X	20805681	X_20805681_SNP [dm3] X_20934654_SNP [dm6]	C	T	2.138e^-5	0.064	UPSTREAM Npc1b INTERGENIC
3L	1080847	3L_1080847_SNP [dm3] 3L_1080847_SNP [dm6]	T	G	2.171e^-5	0.065	INTRON bab1
2R	17894928	2R_17894928_INS [dm3] 2R_22007423_INS [dm6]	A	ACA	2.205e^-5	0.066	INTRON CG34370
2L	18152752	2L_18152752_SNP [dm3] 2L_18152752_SNP [dm6]	T	C	2.208e^-5	0.066	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	2989476	2R_2989476_SNP [dm3] 2R_7101971_SNP [dm6]	C	A	2.223e^-5	0.067	INTRON esn
2R	19000515	2R_19000515_SNP [dm3] 2R_23112992_SNP [dm6]	A	T	2.230e^-5	0.067	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7724729	2L_7724729_SNP [dm3] 2L_7724729_SNP [dm6]	T	C	2.256e^-5	0.067	SYNONYMOUS_CODING CG13795
3R	20522635	3R_20522635_SNP [dm3] 3R_24696913_SNP [dm6]	T	A	2.273e^-5	0.068	INTRON slo	TF binding site mE1_TFBS_inv
2R	1103413	2R_1103413_SNP [dm3] 2R_5215908_SNP [dm6]	G	T	2.311e^-5	0.069	INTRON Nipped-A	transposable element FlyBase
2R	4192795	2R_4192795_SNP [dm3] 2R_8305290_SNP [dm6]	A	C	2.339e^-5	0.069	DOWNSTREAM CR44447 INTERGENIC
2L	8760217	2L_8760217_SNP [dm3] 2L_8760217_SNP [dm6]	C	T	2.382e^-5	0.071	INTERGENIC	TF binding site mE1_TFBS_cad
X	4138181	X_4138181_SNP [dm3] X_4244148_SNP [dm6]	T	G	2.382e^-5	0.071	UTR_3_PRIME Muc4B
3L	2602692	3L_2602692_SNP [dm3] 3L_2602692_SNP [dm6]	G	A	2.392e^-5	0.071	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	5307462	2R_5307462_SNP [dm3] 2R_9419957_SNP [dm6]	A	C	2.415e^-5	0.071	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2839118	2R_2839118_SNP [dm3] 2R_6951613_SNP [dm6]	C	T	2.539e^-5	0.075	INTRON mim & 2 others
2L	20330247	2L_20330247_SNP [dm3] 2L_20330247_SNP [dm6]	A	G	2.582e^-5	0.076	INTRON spir
3L	9203977	3L_9203977_SNP [dm3] 3L_9210877_SNP [dm6]	G	A	2.605e^-5	0.076	INTERGENIC	TF binding site BDTNP1_TFBS_ftz
3L	7711800	3L_7711800_SNP [dm3] 3L_7718700_SNP [dm6]	T	G	2.605e^-5	0.076	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	9105917	3L_9105917_SNP [dm3] 3L_9112817_SNP [dm6]	C	A	2.632e^-5	0.077	INTRON bol	TF binding site BDTNP1_TFBS_twi
2L	847477	2L_847477_SNP [dm3] 2L_847477_SNP [dm6]	T	C	2.640e^-5	0.077	INTRON drongo
2L	6247062	2L_6247062_SNP [dm3] 2L_6247062_SNP [dm6]	G	A	2.657e^-5	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6247101	2L_6247101_SNP [dm3] 2L_6247101_SNP [dm6]	A	C	2.657e^-5	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6247117	2L_6247117_SNP [dm3] 2L_6247117_SNP [dm6]	T	G	2.657e^-5	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6247128	2L_6247128_SNP [dm3] 2L_6247128_SNP [dm6]	T	G	2.657e^-5	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11204696	3R_11204696_SNP [dm3] 3R_15378974_SNP [dm6]	T	C	2.685e^-5	0.078	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	22188014	2L_22188014_SNP [dm3] 2L_22188014_SNP [dm6]	T	C	2.695e^-5	0.078	INTERGENIC	transposable element FlyBase
3L	12170298	3L_12170298_SNP [dm3] 3L_12177198_SNP [dm6]	A	C	2.705e^-5	0.078	UPSTREAM CAH2 INTERGENIC
X	12135873	X_12135873_SNP [dm3] X_12241840_SNP [dm6]	C	A	2.750e^-5	0.079	INTRON Ten-a
X	13814055	X_13814055_SNP [dm3] X_13920022_SNP [dm6]	G	A	2.777e^-5	0.08	INTRON mamo
2R	2863924	2R_2863924_INS [dm3] 2R_6976419_INS [dm6]	A	ATAAA	2.800e^-5	0.08	UTR_3_PRIME vimar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19796005	2L_19796005_SNP [dm3] 2L_19796005_SNP [dm6]	C	T	2.802e^-5	0.08	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	10369354	3L_10369354_SNP [dm3] 3L_10376254_SNP [dm6]	C	T	2.806e^-5	0.08	INTERGENIC
X	14191448	X_14191448_SNP [dm3] X_14297415_SNP [dm6]	G	A	2.808e^-5	0.08	INTERGENIC
3R	9754937	3R_9754937_SNP [dm3] 3R_13929215_SNP [dm6]	T	C	2.810e^-5	0.08	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9436068	3L_9436068_INS [dm3] 3L_9442968_INS [dm6]	G	GAGGCCTCCAACGAC...	2.845e^-5	0.081	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	9436070	3L_9436070_DEL [dm3] 3L_9442970_DEL [dm6]	CCTTCTGTCCTTCC...	C	2.845e^-5	0.081	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	5084465	X_5084465_SNP [dm3] X_5190432_SNP [dm6]	A	G	2.848e^-5	0.081	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1064032	2L_1064032_SNP [dm3] 2L_1064032_SNP [dm6]	A	C	2.882e^-5	0.082	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10353012	X_10353012_DEL [dm3] X_10458979_DEL [dm6]	TT	T	2.915e^-5	0.083	INTRON Or9a
3L	1751588	3L_1751588_SNP [dm3] 3L_1751588_SNP [dm6]	C	T	2.931e^-5	0.083	SYNONYMOUS_CODING CG13921 DOWNSTREAM Cht2	TF binding site mE1_TFBS_chinmo
3L	17635328	3L_17635328_SNP [dm3] 3L_17642228_SNP [dm6]	A	G	2.933e^-5	0.083	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4028554	3L_4028554_SNP [dm3] 3L_4028554_SNP [dm6]	T	G	2.933e^-5	0.083	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4012099	3L_4012099_SNP [dm3] 3L_4012099_SNP [dm6]	G	C	2.934e^-5	0.083	INTERGENIC
3L	7773183	3L_7773183_SNP [dm3] 3L_7780083_SNP [dm6]	C	G	2.948e^-5	0.083	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
X	10022114	X_10022114_SNP [dm3] X_10128081_SNP [dm6]	T	G	2.960e^-5	0.083	INTRON CR44894 & 1 other
3L	6286647	3L_6286647_SNP [dm3] 3L_6293547_SNP [dm6]	C	A	3.045e^-5	0.086	INTERGENIC
2R	11648085	2R_11648085_INS [dm3] 2R_15760580_INS [dm6]	G	GG	3.079e^-5	0.086	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1753420	3L_1753420_SNP [dm3] 3L_1753420_SNP [dm6]	G	T	3.093e^-5	0.087	INTRON Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14771204	3L_14771204_SNP [dm3] 3L_14778104_SNP [dm6]	A	G	3.099e^-5	0.087	SPLICE_SITE_REGION bmm INTRON bmm
2L	1208672	2L_1208672_SNP [dm3] 2L_1208672_SNP [dm6]	C	A	3.117e^-5	0.087	INTERGENIC
2L	16198082	2L_16198082_SNP [dm3] 2L_16198082_SNP [dm6]	A	G	3.117e^-5	0.087	INTERGENIC
2R	7131679	2R_7131679_SNP [dm3] 2R_11244174_SNP [dm6]	C	A	3.129e^-5	0.087	UPSTREAM CG13226 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13890507	3L_13890507_SNP [dm3] 3L_13897407_SNP [dm6]	T	G	3.147e^-5	0.087	INTRON dysc
X	10021073	X_10021073_SNP [dm3] X_10127040_SNP [dm6]	T	G	3.215e^-5	0.089	INTRON CR44894 & 1 other
X	10021077	X_10021077_SNP [dm3] X_10127044_SNP [dm6]	A	G	3.215e^-5	0.089	INTRON CR44894 & 1 other
3R	9736294	3R_9736294_DEL [dm3] 3R_13910572_DEL [dm6]	ACAAAGATGGATACTGGA...	A	3.224e^-5	0.089	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4750548	3L_4750548_SNP [dm3] 3L_4750548_SNP [dm6]	G	T	3.225e^-5	0.089	INTRON RhoGEF64C
2L	16198092	2L_16198092_SNP [dm3] 2L_16198092_SNP [dm6]	A	G	3.269e^-5	0.09	INTERGENIC
X	17660122	X_17660122_SNP [dm3] X_17766089_SNP [dm6]	T	C	3.294e^-5	0.091	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17021874	X_17021874_SNP [dm3] X_17127841_SNP [dm6]	C	A	3.368e^-5	0.093	SYNONYMOUS_CODING CG5004
2L	5806202	2L_5806202_SNP [dm3] 2L_5806202_SNP [dm6]	T	A	3.372e^-5	0.093	INTRON CG11034
3L	1078671	3L_1078671_SNP [dm3] 3L_1078671_SNP [dm6]	C	T	3.433e^-5	0.094	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3570233	3L_3570233_SNP [dm3] 3L_3570233_SNP [dm6]	A	T	3.460e^-5	0.095	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2R	9753830	2R_9753830_DEL [dm3] 2R_13866325_DEL [dm6]	ATA	A	3.480e^-5	0.095	INTRON shot
2L	15850903	2L_15850903_SNP [dm3] 2L_15850903_SNP [dm6]	C	A	3.493e^-5	0.095	INTERGENIC
3L	683214	3L_683214_SNP [dm3] 3L_683214_SNP [dm6]	C	T	3.527e^-5	0.096	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21247183	3L_21247183_INS [dm3] 3L_21254083_INS [dm6]	A	AA	3.547e^-5	0.097	INTRON Eip78C
3R	3940590	3R_3940590_SNP [dm3] 3R_8114868_SNP [dm6]	G	A	3.576e^-5	0.097	UPSTREAM CR44331 INTRON puc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13561300	3L_13561300_SNP [dm3] 3L_13568200_SNP [dm6]	C	T	3.662e^-5	0.098	INTRON bru-3
3L	7728509	3L_7728509_SNP [dm3] 3L_7735409_SNP [dm6]	G	T	3.662e^-5	0.098	INTRON CG32373 & 1 other
3R	11283530	3R_11283530_SNP [dm3] 3R_15457808_SNP [dm6]	G	A	3.662e^-5	0.098	INTRON AdamTS-A
3R	3854829	3R_3854829_SNP [dm3] 3R_8029107_SNP [dm6]	G	A	3.662e^-5	0.098	SYNONYMOUS_CODING ImpE3 INTRON CG2747	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3880992	3R_3880992_SNP [dm3] 3R_8055270_SNP [dm6]	A	G	3.662e^-5	0.098	UTR_3_PRIME CG43060
3R	3884053	3R_3884053_SNP [dm3] 3R_8058331_SNP [dm6]	C	A	3.662e^-5	0.098	UPSTREAM mAChR-B INTERGENIC
3R	3900159	3R_3900159_SNP [dm3] 3R_8074437_SNP [dm6]	T	C	3.662e^-5	0.098	INTRON mAChR-B
3R	4956836	3R_4956836_SNP [dm3] 3R_9131114_SNP [dm6]	G	T	3.662e^-5	0.098	INTRON pum
2R	9613326	2R_9613326_SNP [dm3] 2R_13725821_SNP [dm6]	C	T	3.754e^-5	0.1	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17646209	3L_17646209_SNP [dm3] 3L_17653109_SNP [dm6]	C	T	3.778e^-5	0.1	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15875268	2R_15875268_SNP [dm3] 2R_19987763_SNP [dm6]	A	T	3.785e^-5	0.1	INTERGENIC
3L	12179744	3L_12179744_SNP [dm3] 3L_12186644_SNP [dm6]	T	C	3.785e^-5	0.1	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad
3R	11204501	3R_11204501_DEL [dm3] 3R_15378779_DEL [dm6]	CCTTTAAGA	C	3.785e^-5	0.1	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11204516	3R_11204516_SNP [dm3] 3R_15378794_SNP [dm6]	T	G	3.785e^-5	0.1	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1080569	3L_1080569_SNP [dm3] 3L_1080569_SNP [dm6]	A	G	3.794e^-5	0.1	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080600	3L_1080600_SNP [dm3] 3L_1080600_SNP [dm6]	G	A	3.794e^-5	0.1	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080611	3L_1080611_SNP [dm3] 3L_1080611_SNP [dm6]	A	G	3.794e^-5	0.1	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1085650	3L_1085650_SNP [dm3] 3L_1085650_SNP [dm6]	C	T	3.794e^-5	0.1	INTRON bab1
3L	1085800	3L_1085800_SNP [dm3] 3L_1085800_SNP [dm6]	G	A	3.794e^-5	0.1	INTRON bab1
3L	7731480	3L_7731480_SNP [dm3] 3L_7738380_SNP [dm6]	T	G	3.802e^-5	0.1	SYNONYMOUS_CODING Snmp2 INTRON CG32373
2L	18286480	2L_18286480_SNP [dm3] 2L_18286480_SNP [dm6]	A	G	3.805e^-5	0.1	UPSTREAM CG31787 INTERGENIC
3R	15300840	3R_15300840_SNP [dm3] 3R_19475118_SNP [dm6]	T	C	3.826e^-5	0.101	INTRON Dys
3L	1078599	3L_1078599_SNP [dm3] 3L_1078599_SNP [dm6]	G	A	3.828e^-5	0.101	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18934746	3L_18934746_SNP [dm3] 3L_18941646_SNP [dm6]	C	A	3.840e^-5	0.101	INTRON CG32204
3L	555606	3L_555606_INS [dm3] 3L_555606_INS [dm6]	T	TT	3.842e^-5	0.101	INTRON hipk
X	979463	X_979463_SNP [dm3] X_1085430_SNP [dm6]	T	C	3.864e^-5	0.101	INTRON CR44779 & 1 other EXON CR44779
3L	11086384	3L_11086384_SNP [dm3] 3L_11093284_SNP [dm6]	A	T	3.879e^-5	0.101	UPSTREAM JIL-1 DOWNSTREAM CG6279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7459489	2R_7459489_SNP [dm3] 2R_11571984_SNP [dm6]	T	A	3.894e^-5	0.101	INTERGENIC
3L	12240426	3L_12240426_SNP [dm3] 3L_12247326_SNP [dm6]	G	T	3.894e^-5	0.101	INTRON app
3L	12240427	3L_12240427_SNP [dm3] 3L_12247327_SNP [dm6]	G	T	3.894e^-5	0.101	INTRON app
3R	20522326	3R_20522326_SNP [dm3] 3R_24696604_SNP [dm6]	A	C	3.894e^-5	0.101	INTRON slo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20522331	3R_20522331_SNP [dm3] 3R_24696609_SNP [dm6]	A	C	3.894e^-5	0.101	INTRON slo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7731405	3L_7731405_INS [dm3] 3L_7738305_INS [dm6]	T	TG	4.051e^-5	0.105	INTRON CG32373 & 1 other
2R	2977787	2R_2977787_SNP [dm3] 2R_7090282_SNP [dm6]	T	A	4.147e^-5	0.105	INTRON esn
2R	2978025	2R_2978025_SNP [dm3] 2R_7090520_SNP [dm6]	G	A	4.147e^-5	0.105	INTRON esn
2R	2978183	2R_2978183_SNP [dm3] 2R_7090678_SNP [dm6]	G	C	4.147e^-5	0.105	INTRON esn
2R	2978194	2R_2978194_SNP [dm3] 2R_7090689_SNP [dm6]	G	A	4.147e^-5	0.105	INTRON esn
2R	2979852	2R_2979852_SNP [dm3] 2R_7092347_SNP [dm6]	T	G	4.147e^-5	0.105	INTRON esn
2R	2980514	2R_2980514_SNP [dm3] 2R_7093009_SNP [dm6]	G	T	4.147e^-5	0.105	INTRON esn
3L	19015495	3L_19015495_SNP [dm3] 3L_19022395_SNP [dm6]	A	G	4.147e^-5	0.105	INTRON nkd	TF binding site mE1_TFBS_HSA
3L	19015530	3L_19015530_INS [dm3] 3L_19022430_INS [dm6]	G	GGAGAACCATTTCAAAATCA...	4.147e^-5	0.105	INTRON nkd	TF binding site mE1_TFBS_HSA
3L	19015538	3L_19015538_SNP [dm3] 3L_19022438_SNP [dm6]	C	T	4.147e^-5	0.105	INTRON nkd	TF binding site mE1_TFBS_HSA
3L	3355270	3L_3355270_SNP [dm3] 3L_3355270_SNP [dm6]	A	G	4.147e^-5	0.105	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3355363	3L_3355363_SNP [dm3] 3L_3355363_SNP [dm6]	A	G	4.147e^-5	0.105	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3356911	3L_3356911_SNP [dm3] 3L_3356911_SNP [dm6]	T	C	4.147e^-5	0.105	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	4354621	3L_4354621_SNP [dm3] 3L_4354621_SNP [dm6]	T	C	4.147e^-5	0.105	INTRON Cip4
X	13823896	X_13823896_SNP [dm3] X_13929863_SNP [dm6]	T	C	4.147e^-5	0.105	INTRON mamo
X	9634489	X_9634489_SNP [dm3] X_9740456_SNP [dm6]	G	A	4.147e^-5	0.105	INTRON Sp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16624625	2L_16624625_SNP [dm3] 2L_16624625_SNP [dm6]	G	A	4.149e^-5	0.105	INTRON CG42389
2L	16624720	2L_16624720_SNP [dm3] 2L_16624720_SNP [dm6]	G	A	4.149e^-5	0.105	INTRON CG42389
2L	16624872	2L_16624872_INS [dm3] 2L_16624872_INS [dm6]	G	AA	4.149e^-5	0.105	INTRON CG42389
2L	16625416	2L_16625416_SNP [dm3] 2L_16625416_SNP [dm6]	C	T	4.149e^-5	0.105	INTRON CG42389	TF binding site mE1_TFBS_run
2L	18175985	2L_18175985_SNP [dm3] 2L_18175985_SNP [dm6]	G	T	4.202e^-5	0.106	INTRON CG42750
3L	12865778	3L_12865778_SNP [dm3] 3L_12872678_SNP [dm6]	G	T	4.257e^-5	0.107	INTERGENIC
3L	17634889	3L_17634889_SNP [dm3] 3L_17641789_SNP [dm6]	G	T	4.261e^-5	0.107	INTRON Pep	TF binding site BDTNP1_TFBS_dl
2L	18187338	2L_18187338_SNP [dm3] 2L_18187338_SNP [dm6]	G	T	4.285e^-5	0.107	SYNONYMOUS_CODING CG42750
X	1950434	X_1950434_SNP [dm3] X_2056401_SNP [dm6]	A	G	4.321e^-5	0.107	SYNONYMOUS_CODING Sik2 DOWNSTREAM CG4313 EXON CR44896	TF binding site mE1_TFBS_chinmo
2L	6009184	2L_6009184_SNP [dm3] 2L_6009184_SNP [dm6]	G	A	4.347e^-5	0.107	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2L	6009232	2L_6009232_SNP [dm3] 2L_6009232_SNP [dm6]	G	T	4.347e^-5	0.107	INTRON CG9098	TF binding site mE1_TFBS_chinmo
2R	3784488	2R_3784488_SNP [dm3] 2R_7896983_SNP [dm6]	G	A	4.347e^-5	0.107	INTRON CG30377
2R	3784521	2R_3784521_SNP [dm3] 2R_7897016_SNP [dm6]	A	G	4.347e^-5	0.107	INTRON CG30377
2R	3819100	2R_3819100_SNP [dm3] 2R_7931595_SNP [dm6]	T	G	4.347e^-5	0.107	UPSTREAM CG30381 & 1 other INTRON rnh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3819525	2R_3819525_SNP [dm3] 2R_7932020_SNP [dm6]	G	A	4.347e^-5	0.107	SYNONYMOUS_CODING rnh1 UPSTREAM drosha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	6036822	3L_6036822_SNP [dm3] 3L_6043722_SNP [dm6]	C	G	4.384e^-5	0.107	INTERGENIC
2L	1693686	2L_1693686_SNP [dm3] 2L_1693686_SNP [dm6]	T	C	4.396e^-5	0.107	INTRON chinmo
2L	6599260	2L_6599260_MNP [dm3] 2L_6599260_MNP [dm6]	ACACAC	CTGTTT	4.396e^-5	0.107	INTRON CG11319
2L	7159544	2L_7159544_SNP [dm3] 2L_7159544_SNP [dm6]	C	A	4.396e^-5	0.107	INTERGENIC
3L	12758918	3L_12758918_SNP [dm3] 3L_12765818_SNP [dm6]	G	T	4.396e^-5	0.107	SYNONYMOUS_CODING CG32113
3L	2598104	3L_2598104_SNP [dm3] 3L_2598104_SNP [dm6]	C	T	4.396e^-5	0.107	NON_SYNONYMOUS_CODING CG12182	TF binding site mE1_TFBS_sens
3L	2602749	3L_2602749_SNP [dm3] 3L_2602749_SNP [dm6]	T	G	4.396e^-5	0.107	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12649057	3R_12649057_SNP [dm3] 3R_16823335_SNP [dm6]	A	T	4.396e^-5	0.107	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3989529	3R_3989529_SNP [dm3] 3R_8163807_SNP [dm6]	T	A	4.396e^-5	0.107	INTRON grn
X	12698781	X_12698781_SNP [dm3] X_12804748_SNP [dm6]	G	A	4.396e^-5	0.107	DOWNSTREAM CG3775 INTRON Pde9
X	12698800	X_12698800_DEL [dm3] X_12804767_DEL [dm6]	ATTACAATACAATACAATAC...	CC	4.396e^-5	0.107	DOWNSTREAM CG3775 INTRON Pde9
X	12698937	X_12698937_SNP [dm3] X_12804904_SNP [dm6]	T	C	4.396e^-5	0.107	DOWNSTREAM CG3775 INTRON Pde9
X	5847187	X_5847187_SNP [dm3] X_5953154_SNP [dm6]	A	T	4.396e^-5	0.107	INTRON CG6048
3L	17578033	3L_17578033_SNP [dm3] 3L_17584933_SNP [dm6]	G	A	4.403e^-5	0.107	INTRON Eip74EF
2L	18153176	2L_18153176_SNP [dm3] 2L_18153176_SNP [dm6]	C	T	4.410e^-5	0.107	UTR_5_PRIME CG17681 UPSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5233267	2L_5233267_SNP [dm3] 2L_5233267_SNP [dm6]	T	A	4.458e^-5	0.109	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11484627	2R_11484627_SNP [dm3] 2R_15597122_SNP [dm6]	T	C	4.566e^-5	0.111	INTERGENIC
3L	16327833	3L_16327833_SNP [dm3] 3L_16334733_SNP [dm6]	C	A	4.584e^-5	0.111	DOWNSTREAM CG13056 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19279592	2L_19279592_SNP [dm3] 2L_19279592_SNP [dm6]	G	A	4.610e^-5	0.112	INTERGENIC
2R	4504475	2R_4504475_SNP [dm3] 2R_8616970_SNP [dm6]	A	T	4.646e^-5	0.112	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20711731	2L_20711731_SNP [dm3] 2L_20711731_SNP [dm6]	A	G	4.719e^-5	0.114	DOWNSTREAM CR44187 INTRON Hr38 EXON CR44188
3L	2599006	3L_2599006_SNP [dm3] 3L_2599006_SNP [dm6]	T	G	4.719e^-5	0.114	SYNONYMOUS_CODING CG12182 UTR_5_PRIME CG12182 UPSTREAM CG16985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
X	14526553	X_14526553_DEL [dm3] X_14632520_DEL [dm6]	GG	G	4.719e^-5	0.114	INTRON NetA	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	4560120	X_4560120_SNP [dm3] X_4666087_SNP [dm6]	T	A	4.719e^-5	0.114	INTRON CG3009
3L	8945180	3L_8945180_SNP [dm3] 3L_8952080_SNP [dm6]	T	G	4.770e^-5	0.115	INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9736347	3R_9736347_SNP [dm3] 3R_13910625_SNP [dm6]	T	A	4.785e^-5	0.115	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6531343	2L_6531343_SNP [dm3] 2L_6531343_SNP [dm6]	C	T	4.814e^-5	0.116	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1746734	3L_1746734_SNP [dm3] 3L_1746734_SNP [dm6]	T	G	4.834e^-5	0.116	UPSTREAM CG13921 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	14896697	3L_14896697_SNP [dm3] 3L_14903597_SNP [dm6]	G	T	4.883e^-5	0.116	UPSTREAM DCX-EMAP INTERGENIC
3R	5745941	3R_5745941_SNP [dm3] 3R_9920219_SNP [dm6]	C	T	4.883e^-5	0.116	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
2L	8043077	2L_8043077_SNP [dm3] 2L_8043077_SNP [dm6]	G	A	4.884e^-5	0.116	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043078	2L_8043078_SNP [dm3] 2L_8043078_SNP [dm6]	T	A	4.884e^-5	0.116	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043081	2L_8043081_SNP [dm3] 2L_8043081_SNP [dm6]	G	A	4.884e^-5	0.116	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043084	2L_8043084_SNP [dm3] 2L_8043084_SNP [dm6]	A	T	4.884e^-5	0.116	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8043094	2L_8043094_SNP [dm3] 2L_8043094_SNP [dm6]	C	A	4.884e^-5	0.116	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13425388	2R_13425388_SNP [dm3] 2R_17537883_SNP [dm6]	G	C	4.890e^-5	0.116	SYNONYMOUS_CODING eIF3-S9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19493837	2R_19493837_SNP [dm3] 2R_23606314_SNP [dm6]	A	G	4.890e^-5	0.116	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
2L	9527546	2L_9527546_SNP [dm3] 2L_9527546_SNP [dm6]	G	T	4.915e^-5	0.116	UPSTREAM CG31883 INTRON Oatp30B
X	14258195	X_14258195_SNP [dm3] X_14364162_SNP [dm6]	T	C	4.915e^-5	0.116	INTRON dpr8
X	14258560	X_14258560_SNP [dm3] X_14364527_SNP [dm6]	G	A	4.915e^-5	0.116	INTRON dpr8
3R	3669349	3R_3669349_DEL [dm3] 3R_7843627_DEL [dm6]	TAATAAT	T	4.921e^-5	0.116	INTRON CG34384
2R	2988873	2R_2988873_SNP [dm3] 2R_7101368_SNP [dm6]	C	T	4.976e^-5	0.117	INTRON esn
X	8814846	X_8814846_SNP [dm3] X_8920813_SNP [dm6]	A	G	4.993e^-5	0.117	UPSTREAM CR44111 INTRON rdgA
3L	21534654	3L_21534654_SNP [dm3] 3L_21541554_SNP [dm6]	T	C	5.055e^-5	0.119	UPSTREAM CG33290 DOWNSTREAM VhaM9.7-b INTERGENIC
2L	14417079	2L_14417079_SNP [dm3] 2L_14417079_SNP [dm6]	G	T	5.105e^-5	0.12	SYNONYMOUS_CODING Pburs
3L	1081557	3L_1081557_SNP [dm3] 3L_1081557_SNP [dm6]	G	A	5.128e^-5	0.12	INTRON bab1
3L	14233872	3L_14233872_SNP [dm3] 3L_14240772_SNP [dm6]	A	T	5.168e^-5	0.12	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13635734	X_13635734_SNP [dm3] X_13741701_SNP [dm6]	A	G	5.168e^-5	0.12	SYNONYMOUS_CODING Grip91 UTR_3_PRIME CG11151 DOWNSTREAM CG11151
3L	4012181	3L_4012181_SNP [dm3] 3L_4012181_SNP [dm6]	C	T	5.219e^-5	0.12	INTERGENIC
2R	12538240	2R_12538240_SNP [dm3] 2R_16650735_SNP [dm6]	A	C	5.241e^-5	0.12	UTR_3_PRIME gprs DOWNSTREAM Amyrel INTRON gprs
3L	11086453	3L_11086453_DEL [dm3] 3L_11093353_DEL [dm6]	AG	A	5.249e^-5	0.12	UPSTREAM JIL-1 DOWNSTREAM CG6279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2826784	2R_2826784_SNP [dm3] 2R_6939279_SNP [dm6]	C	T	5.268e^-5	0.12	SPLICE_SITE_REGION mim INTRON mim
2L	8760223	2L_8760223_SNP [dm3] 2L_8760223_SNP [dm6]	A	T	5.269e^-5	0.12	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1660199	2R_1660199_MNP [dm3] 2R_5772694_MNP [dm6]	TGCT	AAGC	5.269e^-5	0.12	UTR_3_PRIME Gp210 DOWNSTREAM Gp210	TF binding site BDTNP1_TFBS_dl
2R	1660205	2R_1660205_DEL [dm3] 2R_5772700_DEL [dm6]	ACGT	A	5.269e^-5	0.12	UTR_3_PRIME Gp210 DOWNSTREAM Gp210	TF binding site BDTNP1_TFBS_dl
2R	2822426	2R_2822426_SNP [dm3] 2R_6934921_SNP [dm6]	C	G	5.269e^-5	0.12	NON_SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12697766	3L_12697766_SNP [dm3] 3L_12704666_SNP [dm6]	C	T	5.269e^-5	0.12	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20955520	3L_20955520_SNP [dm3] 3L_20962420_SNP [dm6]	G	A	5.269e^-5	0.12	SYNONYMOUS_CODING CG10587 DOWNSTREAM CG12983	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	21282231	3L_21282231_SNP [dm3] 3L_21289131_SNP [dm6]	T	G	5.269e^-5	0.12	NON_SYNONYMOUS_CODING pzg	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	21406914	3L_21406914_SNP [dm3] 3L_21413814_SNP [dm6]	G	T	5.269e^-5	0.12	INTRON rgn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21410105	3L_21410105_SNP [dm3] 3L_21417005_SNP [dm6]	A	T	5.269e^-5	0.12	INTRON rgn
3L	21410202	3L_21410202_SNP [dm3] 3L_21417102_SNP [dm6]	G	A	5.269e^-5	0.12	INTRON rgn
3L	21410244	3L_21410244_SNP [dm3] 3L_21417144_SNP [dm6]	G	A	5.269e^-5	0.12	INTRON rgn
3L	21427859	3L_21427859_SNP [dm3] 3L_21434759_SNP [dm6]	T	A	5.269e^-5	0.12	INTRON Aef1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21427931	3L_21427931_SNP [dm3] 3L_21434831_SNP [dm6]	G	A	5.269e^-5	0.12	INTRON Aef1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21444288	3L_21444288_DEL [dm3] 3L_21451188_DEL [dm6]	TATGTAAAA	T	5.269e^-5	0.12	INTERGENIC
X	3871381	X_3871381_SNP [dm3] X_3977348_SNP [dm6]	C	G	5.288e^-5	0.121	INTERGENIC
2R	2977642	2R_2977642_SNP [dm3] 2R_7090137_SNP [dm6]	C	A	5.329e^-5	0.121	INTRON esn
2R	8897580	2R_8897580_SNP [dm3] 2R_13010075_SNP [dm6]	A	T	5.340e^-5	0.121	INTERGENIC
2R	9624406	2R_9624406_SNP [dm3] 2R_13736901_SNP [dm6]	G	A	5.340e^-5	0.121	INTRON fas
3L	17758600	3L_17758600_SNP [dm3] 3L_17765500_SNP [dm6]	C	T	5.340e^-5	0.121	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7131080	2R_7131080_SNP [dm3] 2R_11243575_SNP [dm6]	G	C	5.429e^-5	0.123	UPSTREAM CG13226 INTERGENIC
X	5115648	X_5115648_SNP [dm3] X_5221615_SNP [dm6]	C	G	5.438e^-5	0.123	INTRON CG15465 & 1 other
2R	18672531	2R_18672531_SNP [dm3] 2R_22785026_SNP [dm6]	T	C	5.439e^-5	0.123	DOWNSTREAM CG30270 INTRON CG42260
2R	18674012	2R_18674012_SNP [dm3] 2R_22786507_SNP [dm6]	C	T	5.439e^-5	0.123	INTRON CG42260
X	6519697	X_6519697_SNP [dm3] X_6625664_SNP [dm6]	A	G	5.439e^-5	0.123	INTRON pigs	TF binding site BDTNP1_TFBS_dl
3R	3865378	3R_3865378_SNP [dm3] 3R_8039656_SNP [dm6]	C	T	5.452e^-5	0.123	DOWNSTREAM CR44936 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8713614	2R_8713614_SNP [dm3] 2R_12826109_SNP [dm6]	C	T	5.519e^-5	0.124	INTERGENIC
2L	1394844	2L_1394844_SNP [dm3] 2L_1394844_SNP [dm6]	A	T	5.635e^-5	0.127	INTRON lea
2R	13394823	2R_13394823_SNP [dm3] 2R_17507318_SNP [dm6]	C	T	5.723e^-5	0.128	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
3L	7938349	3L_7938349_SNP [dm3] 3L_7945249_SNP [dm6]	C	T	5.723e^-5	0.128	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938356	3L_7938356_INS [dm3] 3L_7945256_INS [dm6]	C	CTT	5.723e^-5	0.128	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938358	3L_7938358_SNP [dm3] 3L_7945258_SNP [dm6]	C	A	5.723e^-5	0.128	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938362	3L_7938362_INS [dm3] 3L_7945262_INS [dm6]	G	TTTCATC	5.723e^-5	0.128	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14900461	3L_14900461_INS [dm3] 3L_14907361_INS [dm6]	T	TT	5.734e^-5	0.128	INTRON DCX-EMAP
X	6756030	X_6756030_SNP [dm3] X_6861997_SNP [dm6]	A	G	5.800e^-5	0.129	INTRON CG14434 EXON CR45531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1776922	3L_1776922_SNP [dm3] 3L_1776922_SNP [dm6]	T	G	5.802e^-5	0.129	SYNONYMOUS_CODING CG12018 UPSTREAM mRpL46 DOWNSTREAM CG2021	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3356755	3L_3356755_SNP [dm3] 3L_3356755_SNP [dm6]	T	C	5.812e^-5	0.129	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
X	13823893	X_13823893_SNP [dm3] X_13929860_SNP [dm6]	C	T	5.812e^-5	0.129	INTRON mamo
2L	19796195	2L_19796195_SNP [dm3] 2L_19796195_SNP [dm6]	G	T	5.900e^-5	0.13	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3784535	2R_3784535_SNP [dm3] 2R_7897030_SNP [dm6]	T	A	5.902e^-5	0.13	INTRON CG30377
2L	11339193	2L_11339193_SNP [dm3] 2L_11339193_SNP [dm6]	A	G	5.921e^-5	0.13	UPSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5462262	2L_5462262_SNP [dm3] 2L_5462262_SNP [dm6]	T	A	5.922e^-5	0.13	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7523458	2L_7523458_SNP [dm3] 2L_7523458_SNP [dm6]	G	A	5.922e^-5	0.13	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15173803	2L_15173803_SNP [dm3] 2L_15173803_SNP [dm6]	T	G	5.938e^-5	0.13	INTRON CG4168
3L	20905020	3L_20905020_SNP [dm3] 3L_20911920_SNP [dm6]	C	A	5.967e^-5	0.13	UPSTREAM CR45733 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15384683	2L_15384683_SNP [dm3] 2L_15384683_SNP [dm6]	G	A	5.995e^-5	0.13	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	10009695	2R_10009695_SNP [dm3] 2R_14122190_SNP [dm6]	C	G	5.995e^-5	0.13	INTRON Prosap
2R	19502307	2R_19502307_SNP [dm3] 2R_23614784_SNP [dm6]	T	C	5.995e^-5	0.13	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	12240596	3L_12240596_SNP [dm3] 3L_12247496_SNP [dm6]	A	T	5.995e^-5	0.13	INTRON app
3L	6491922	3L_6491922_SNP [dm3] 3L_6498822_SNP [dm6]	C	T	5.995e^-5	0.13	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	7067514	3L_7067514_SNP [dm3] 3L_7074414_SNP [dm6]	C	A	5.995e^-5	0.13	NON_SYNONYMOUS_CODING CG34030 INTRON CG8641
3L	7355151	3L_7355151_SNP [dm3] 3L_7362051_SNP [dm6]	C	T	5.995e^-5	0.13	SYNONYMOUS_CODING Sec63	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7924754	3L_7924754_SNP [dm3] 3L_7931654_SNP [dm6]	A	C	5.995e^-5	0.13	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8105983	3L_8105983_SNP [dm3] 3L_8112883_SNP [dm6]	C	T	5.995e^-5	0.13	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 INTRON CG7927
X	13845051	X_13845051_SNP [dm3] X_13951018_SNP [dm6]	C	T	5.995e^-5	0.13	INTRON mamo
X	9786732	X_9786732_SNP [dm3] X_9892699_SNP [dm6]	C	T	5.995e^-5	0.13	INTRON CG15249
2L	14376365	2L_14376365_INS [dm3] 2L_14376365_INS [dm6]	A	AAA	6.015e^-5	0.131	INTERGENIC
2L	9043904	2L_9043904_SNP [dm3] 2L_9043904_SNP [dm6]	A	G	6.056e^-5	0.131	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5924209	X_5924209_SNP [dm3] X_6030176_SNP [dm6]	G	C	6.137e^-5	0.133	INTERGENIC
2R	14271512	2R_14271512_SNP [dm3] 2R_18384007_SNP [dm6]	T	C	6.139e^-5	0.133	UTR_5_PRIME IM1 UPSTREAM IM23 & 1 other DOWNSTREAM CG15067
2L	18878264	2L_18878264_SNP [dm3] 2L_18878264_SNP [dm6]	T	C	6.216e^-5	0.133	INTRON tup	TF binding site mE1_TFBS_HSA
2L	15081402	2L_15081402_SNP [dm3] 2L_15081402_SNP [dm6]	C	T	6.229e^-5	0.133	INTRON CG15270
2L	2737994	2L_2737994_SNP [dm3] 2L_2737994_SNP [dm6]	T	G	6.240e^-5	0.133	DOWNSTREAM mir-4914 INTRON CG31689
2L	2738046	2L_2738046_SNP [dm3] 2L_2738046_SNP [dm6]	A	T	6.240e^-5	0.133	DOWNSTREAM mir-4914 INTRON CG31689
2R	2858639	2R_2858639_SNP [dm3] 2R_6971134_SNP [dm6]	T	A	6.240e^-5	0.133	UTR_5_PRIME mim & 1 other DOWNSTREAM Cyp6u1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6322028	2R_6322028_SNP [dm3] 2R_10434523_SNP [dm6]	C	G	6.240e^-5	0.133	SYNONYMOUS_CODING RanBPM
3L	2601795	3L_2601795_SNP [dm3] 3L_2601795_SNP [dm6]	C	T	6.240e^-5	0.133	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	6.240e^-5	0.133	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4390983	3L_4390983_SNP [dm3] 3L_4390983_SNP [dm6]	T	G	6.240e^-5	0.133	NON_SYNONYMOUS_CODING slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1707238	3L_1707238_SNP [dm3] 3L_1707238_SNP [dm6]	A	G	6.248e^-5	0.133	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1707271	3L_1707271_SNP [dm3] 3L_1707271_SNP [dm6]	T	A	6.248e^-5	0.133	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1244813	2R_1244813_MNP [dm3] 2R_5357308_MNP [dm6]	ATT	GCC	6.249e^-5	0.133	INTERGENIC
2R	1244817	2R_1244817_DEL [dm3] 2R_5357312_DEL [dm6]	GCG	G	6.249e^-5	0.133	INTERGENIC
2R	18250245	2R_18250245_INS [dm3] 2R_22362740_INS [dm6]	A	AA	6.255e^-5	0.133	INTRON Liprin-gamma
2L	1347178	2L_1347178_SNP [dm3] 2L_1347178_SNP [dm6]	C	A	6.366e^-5	0.135	UPSTREAM CR45006 INTERGENIC
3L	14435478	3L_14435478_SNP [dm3] 3L_14442378_SNP [dm6]	G	C	6.373e^-5	0.135	INTRON bbg
3L	1182458	3L_1182458_SNP [dm3] 3L_1182458_SNP [dm6]	T	A	6.382e^-5	0.135	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10677414	2R_10677414_SNP [dm3] 2R_14789909_SNP [dm6]	C	T	6.386e^-5	0.135	INTRON kn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7523527	2L_7523527_SNP [dm3] 2L_7523527_SNP [dm6]	T	A	6.397e^-5	0.135	INTRON RapGAP1	TF binding site mE1_TFBS_cad
3L	9382593	3L_9382593_SNP [dm3] 3L_9389493_SNP [dm6]	T	C	6.397e^-5	0.135	INTRON CG4080
3R	5410714	3R_5410714_INS [dm3] 3R_9584992_INS [dm6]	T	TAAGAAT	6.397e^-5	0.135	INTRON CG8301	TF binding site mE1_TFBS_HSA
3L	21325614	3L_21325614_SNP [dm3] 3L_21332514_SNP [dm6]	A	G	6.439e^-5	0.136	INTRON Rab26
3L	21444397	3L_21444397_SNP [dm3] 3L_21451297_SNP [dm6]	G	A	6.439e^-5	0.136	INTERGENIC
3L	14909382	3L_14909382_SNP [dm3] 3L_14916282_SNP [dm6]	T	A	6.445e^-5	0.136	INTRON DCX-EMAP
2L	18716978	2L_18716978_SNP [dm3] 2L_18716978_SNP [dm6]	A	T	6.472e^-5	0.136	INTRON CG10348
2L	18717015	2L_18717015_SNP [dm3] 2L_18717015_SNP [dm6]	G	A	6.472e^-5	0.136	INTRON CG10348
3L	9805554	3L_9805554_SNP [dm3] 3L_9812454_SNP [dm6]	G	A	6.513e^-5	0.137	INTERGENIC
X	17675584	X_17675584_SNP [dm3] X_17781551_SNP [dm6]	T	C	6.529e^-5	0.137	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9098329	2L_9098329_SNP [dm3] 2L_9098329_SNP [dm6]	C	A	6.546e^-5	0.137	DOWNSTREAM CG31609 INTERGENIC
4	747849	4_747849_DEL [dm3] 4_727223_DEL [dm6]	AATGGTTATA	A	6.550e^-5	0.137	INTRON bt
2R	15685510	2R_15685510_DEL [dm3] 2R_19798005_DEL [dm6]	TTCTGCT	T	6.551e^-5	0.137	INTERGENIC
3R	20559030	3R_20559030_SNP [dm3] 3R_24733308_SNP [dm6]	C	T	6.552e^-5	0.137	INTRON tok
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	6.557e^-5	0.137	SYNONYMOUS_CODING pbl INTRON pbl
2L	6213834	2L_6213834_SNP [dm3] 2L_6213834_SNP [dm6]	C	A	6.605e^-5	0.137	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	5115626	X_5115626_SNP [dm3] X_5221593_SNP [dm6]	C	T	6.641e^-5	0.138	INTRON CG15465 & 1 other
2L	17609106	2L_17609106_SNP [dm3] 2L_17609106_SNP [dm6]	T	A	6.650e^-5	0.138	INTERGENIC
3L	16902784	3L_16902784_SNP [dm3] 3L_16909684_SNP [dm6]	C	T	6.688e^-5	0.139	INTRON Lmpt
2L	17583236	2L_17583236_SNP [dm3] 2L_17583236_SNP [dm6]	T	A	6.733e^-5	0.139	UPSTREAM CR45111 INTERGENIC
2L	17583243	2L_17583243_SNP [dm3] 2L_17583243_SNP [dm6]	C	T	6.733e^-5	0.139	UPSTREAM CR45111 INTERGENIC
2L	17583247	2L_17583247_INS [dm3] 2L_17583247_INS [dm6]	A	ACAA	6.733e^-5	0.139	UPSTREAM CR45111 INTERGENIC
2L	20519563	2L_20519563_SNP [dm3] 2L_20519563_SNP [dm6]	G	T	6.733e^-5	0.139	INTERGENIC
3L	14544114	3L_14544114_SNP [dm3] 3L_14551014_SNP [dm6]	G	A	6.829e^-5	0.141	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	9723241	X_9723241_INS [dm3] X_9829208_INS [dm6]	A	ATAGTTT	6.851e^-5	0.141	INTRON CG32698
3R	10608804	3R_10608804_SNP [dm3] 3R_14783082_SNP [dm6]	C	T	6.853e^-5	0.141	INTRON jvl
2R	12228398	2R_12228398_SNP [dm3] 2R_16340893_SNP [dm6]	C	A	6.873e^-5	0.141	UTR_3_PRIME Hmgs DOWNSTREAM CG7997
2R	9340284	2R_9340284_SNP [dm3] 2R_13452779_SNP [dm6]	T	G	6.889e^-5	0.141	DOWNSTREAM arr INTRON cbs
X	5084679	X_5084679_SNP [dm3] X_5190646_SNP [dm6]	G	T	6.889e^-5	0.141	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA
2L	20418510	2L_20418510_SNP [dm3] 2L_20418510_SNP [dm6]	A	T	6.920e^-5	0.141	UPSTREAM snoRNA:Psi18S-640a & 6 others DOWNSTREAM snoRNA:Psi18S-525a INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2L	20418511	2L_20418511_SNP [dm3] 2L_20418511_SNP [dm6]	T	A	6.920e^-5	0.141	UPSTREAM snoRNA:Psi18S-640a & 6 others DOWNSTREAM snoRNA:Psi18S-525a INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2L	20418517	2L_20418517_SNP [dm3] 2L_20418517_SNP [dm6]	G	T	6.920e^-5	0.141	UPSTREAM snoRNA:Psi18S-640a & 6 others DOWNSTREAM snoRNA:Psi18S-525a INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2L	20418518	2L_20418518_SNP [dm3] 2L_20418518_SNP [dm6]	T	A	6.920e^-5	0.141	UPSTREAM snoRNA:Psi18S-640a & 6 others DOWNSTREAM snoRNA:Psi18S-525a INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2L	20418522	2L_20418522_SNP [dm3] 2L_20418522_SNP [dm6]	C	T	6.920e^-5	0.141	UPSTREAM snoRNA:Psi18S-640a & 6 others DOWNSTREAM snoRNA:Psi18S-525a INTRON Arpc2	TF binding site mE1_TFBS_zfh1
3L	7416094	3L_7416094_SNP [dm3] 3L_7422994_SNP [dm6]	G	A	6.951e^-5	0.141	UPSTREAM CG42458 INTERGENIC
3L	3355021	3L_3355021_SNP [dm3] 3L_3355021_SNP [dm6]	A	G	6.979e^-5	0.141	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	473781	3L_473781_SNP [dm3] 3L_473781_SNP [dm6]	G	A	6.997e^-5	0.141	INTRON klar
X	14258145	X_14258145_SNP [dm3] X_14364112_SNP [dm6]	T	C	6.998e^-5	0.141	INTRON dpr8
2L	5189472	2L_5189472_SNP [dm3] 2L_5189472_SNP [dm6]	C	A	7.013e^-5	0.141	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2805764	2R_2805764_SNP [dm3] 2R_6918259_SNP [dm6]	G	A	7.082e^-5	0.141	INTRON CG30158
3L	20900833	3L_20900833_SNP [dm3] 3L_20907733_SNP [dm6]	T	C	7.084e^-5	0.141	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11311429	3R_11311429_SNP [dm3] 3R_15485707_SNP [dm6]	A	C	7.092e^-5	0.141	UPSTREAM CG5205 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	10374757	2L_10374757_SNP [dm3] 2L_10374757_SNP [dm6]	G	A	7.134e^-5	0.141	SYNONYMOUS_CODING CG33303 UPSTREAM rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21052585	3L_21052585_DEL [dm3] 3L_21059485_DEL [dm6]	CG	C	7.139e^-5	0.141	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21069367	3L_21069367_SNP [dm3] 3L_21076267_SNP [dm6]	G	A	7.139e^-5	0.141	NON_SYNONYMOUS_CODING ko DOWNSTREAM siz	TF binding site mE1_TFBS_cad
3L	21458124	3L_21458124_SNP [dm3] 3L_21465024_SNP [dm6]	T	A	7.139e^-5	0.141	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16276909	2R_16276909_SNP [dm3] 2R_20389404_SNP [dm6]	G	A	7.150e^-5	0.141	INTERGENIC
3L	14892799	3L_14892799_SNP [dm3] 3L_14899699_SNP [dm6]	T	A	7.150e^-5	0.141	INTERGENIC
3L	14903054	3L_14903054_SNP [dm3] 3L_14909954_SNP [dm6]	A	C	7.150e^-5	0.141	INTRON DCX-EMAP
3L	16344064	3L_16344064_SNP [dm3] 3L_16350964_SNP [dm6]	A	T	7.192e^-5	0.141	DOWNSTREAM tRNA:CR32357 INTRON CG4925	TF binding site mE1_TFBS_sens
3R	3855969	3R_3855969_SNP [dm3] 3R_8030247_SNP [dm6]	C	A	7.192e^-5	0.141	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17035319	2L_17035319_SNP [dm3] 2L_17035319_SNP [dm6]	C	G	7.224e^-5	0.141	INTERGENIC
3L	1380738	3L_1380738_SNP [dm3] 3L_1380738_SNP [dm6]	C	T	7.357e^-5	0.141	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
2L	16867692	2L_16867692_SNP [dm3] 2L_16867692_SNP [dm6]	T	A	7.364e^-5	0.141	INTERGENIC
2R	10551678	2R_10551678_SNP [dm3] 2R_14664173_SNP [dm6]	G	T	7.376e^-5	0.141	DOWNSTREAM CG12861 INTERGENIC
3L	7863650	3L_7863650_SNP [dm3] 3L_7870550_SNP [dm6]	C	T	7.376e^-5	0.141	INTRON CG32365
3R	3008570	3R_3008570_SNP [dm3] 3R_7182848_SNP [dm6]	C	T	7.376e^-5	0.141	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad
X	19136557	X_19136557_SNP [dm3] X_19242524_SNP [dm6]	T	A	7.376e^-5	0.141	UPSTREAM CG14196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136749	X_19136749_SNP [dm3] X_19242716_SNP [dm6]	A	C	7.376e^-5	0.141	UPSTREAM CG14196 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136831	X_19136831_DEL [dm3] X_19242798_DEL [dm6]	TCCGCTA	T	7.376e^-5	0.141	UPSTREAM CG14196 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14863755	3L_14863755_SNP [dm3] 3L_14870655_SNP [dm6]	G	C	7.393e^-5	0.141	NON_SYNONYMOUS_CODING CG17839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14863813	3L_14863813_SNP [dm3] 3L_14870713_SNP [dm6]	C	T	7.393e^-5	0.141	SYNONYMOUS_CODING CG17839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13854149	2R_13854149_SNP [dm3] 2R_17966644_SNP [dm6]	C	A	7.430e^-5	0.141	INTERGENIC
2R	11092555	2R_11092555_SNP [dm3] 2R_15205050_SNP [dm6]	G	A	7.455e^-5	0.141	DOWNSTREAM CG11807 EXON Ir51a	TF binding site mE1_TFBS_sens
2R	6650808	2R_6650808_SNP [dm3] 2R_10763303_SNP [dm6]	A	G	7.455e^-5	0.141	INTRON CG33144
3L	5420511	3L_5420511_SNP [dm3] 3L_5427411_SNP [dm6]	A	T	7.463e^-5	0.141	INTRON CG34391
3L	5843306	3L_5843306_SNP [dm3] 3L_5850206_SNP [dm6]	A	T	7.463e^-5	0.141	INTERGENIC
3R	4959494	3R_4959494_SNP [dm3] 3R_9133772_SNP [dm6]	G	A	7.463e^-5	0.141	INTRON pum
3R	9759954	3R_9759954_INS [dm3] 3R_13934232_INS [dm6]	G	GAGGG	7.463e^-5	0.141	INTERGENIC
X	7650843	X_7650843_SNP [dm3] X_7756810_SNP [dm6]	T	A	7.463e^-5	0.141	INTERGENIC
3L	16261932	3L_16261932_SNP [dm3] 3L_16268832_SNP [dm6]	G	A	7.490e^-5	0.141	UPSTREAM CG4950 & 1 other INTERGENIC
3L	21439246	3L_21439246_SNP [dm3] 3L_21446146_SNP [dm6]	C	T	7.509e^-5	0.141	INTRON Syx7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11125266	2R_11125266_SNP [dm3] 2R_15237761_SNP [dm6]	C	A	7.525e^-5	0.141	INTRON Fs	TF binding site BDTNP1_TFBS_da
X	15669805	X_15669805_SNP [dm3] X_15775772_SNP [dm6]	G	A	7.539e^-5	0.141	SYNONYMOUS_CODING CG43672
X	1897781	X_1897781_DEL [dm3] X_2003748_DEL [dm6]	TGAGT	CA	7.583e^-5	0.141	UTR_3_PRIME Hr4
X	13977505	X_13977505_SNP [dm3] X_14083472_SNP [dm6]	T	A	7.597e^-5	0.141	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3934993	3R_3934993_SNP [dm3] 3R_8109271_SNP [dm6]	T	C	7.608e^-5	0.141	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4176357	3L_4176357_SNP [dm3] 3L_4176357_SNP [dm6]	G	T	7.614e^-5	0.141	SYNONYMOUS_CODING Teh4 INTRON CG18675
X	6519711	X_6519711_SNP [dm3] X_6625678_SNP [dm6]	T	C	7.614e^-5	0.141	INTRON pigs	TF binding site BDTNP1_TFBS_dl
2L	9042678	2L_9042678_SNP [dm3] 2L_9042678_SNP [dm6]	C	T	7.709e^-5	0.141	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20906498	3L_20906498_SNP [dm3] 3L_20913398_SNP [dm6]	A	T	7.754e^-5	0.141	DOWNSTREAM CR45733 INTRON CR43930
X	7079459	X_7079459_DEL [dm3] X_7185426_DEL [dm6]	AA	A	7.765e^-5	0.141	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da
2R	9973621	2R_9973621_SNP [dm3] 2R_14086116_SNP [dm6]	A	C	7.791e^-5	0.141	INTRON Prosap
2L	6753771	2L_6753771_SNP [dm3] 2L_6753771_SNP [dm6]	T	A	7.829e^-5	0.141	INTRON CG11221
2L	6753773	2L_6753773_SNP [dm3] 2L_6753773_SNP [dm6]	G	T	7.829e^-5	0.141	INTRON CG11221
3L	1182568	3L_1182568_DEL [dm3] 3L_1182568_DEL [dm6]	CC	C	7.834e^-5	0.141	INTERGENIC
3L	5383999	3L_5383999_SNP [dm3] 3L_5390899_SNP [dm6]	A	G	7.841e^-5	0.141	INTERGENIC
2L	18264020	2L_18264020_SNP [dm3] 2L_18264020_SNP [dm6]	C	G	7.861e^-5	0.141	INTRON CG42750
2L	18264269	2L_18264269_SNP [dm3] 2L_18264269_SNP [dm6]	T	G	7.861e^-5	0.141	INTRON CG42750
3L	7869568	3L_7869568_SNP [dm3] 3L_7876468_SNP [dm6]	T	A	7.861e^-5	0.141	INTRON CG32365
2L	6599150	2L_6599150_SNP [dm3] 2L_6599150_SNP [dm6]	C	T	7.938e^-5	0.141	INTRON CG11319
2L	10041223	2L_10041223_SNP [dm3] 2L_10041223_SNP [dm6]	A	G	7.962e^-5	0.141	INTERGENIC
2L	1089803	2L_1089803_SNP [dm3] 2L_1089803_SNP [dm6]	C	G	7.962e^-5	0.141	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11385909	2L_11385909_SNP [dm3] 2L_11385909_SNP [dm6]	C	G	7.962e^-5	0.141	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	12636543	2L_12636543_SNP [dm3] 2L_12636543_SNP [dm6]	G	A	7.962e^-5	0.141	INTRON Ref2
2L	14759316	2L_14759316_SNP [dm3] 2L_14759316_SNP [dm6]	C	T	7.962e^-5	0.141	INTERGENIC
2L	14759358	2L_14759358_SNP [dm3] 2L_14759358_SNP [dm6]	T	A	7.962e^-5	0.141	INTERGENIC
2L	4864452	2L_4864452_DEL [dm3] 2L_4864452_DEL [dm6]	TGTTATTCAGATTTATTCTT...	G	7.962e^-5	0.141	INTRON pog	TF binding site mE1_TFBS_chinmo
2L	6604116	2L_6604116_SNP [dm3] 2L_6604116_SNP [dm6]	G	A	7.962e^-5	0.141	INTERGENIC
2L	6604197	2L_6604197_SNP [dm3] 2L_6604197_SNP [dm6]	G	A	7.962e^-5	0.141	INTERGENIC
2L	6604235	2L_6604235_SNP [dm3] 2L_6604235_SNP [dm6]	A	G	7.962e^-5	0.141	INTERGENIC
2L	6753699	2L_6753699_SNP [dm3] 2L_6753699_SNP [dm6]	C	A	7.962e^-5	0.141	INTRON CG11221
2L	8760219	2L_8760219_SNP [dm3] 2L_8760219_SNP [dm6]	C	G	7.962e^-5	0.141	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8760221	2L_8760221_SNP [dm3] 2L_8760221_SNP [dm6]	T	A	7.962e^-5	0.141	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9022671	2L_9022671_SNP [dm3] 2L_9022671_SNP [dm6]	C	T	7.962e^-5	0.141	INTERGENIC
2L	9045032	2L_9045032_SNP [dm3] 2L_9045032_SNP [dm6]	C	T	7.962e^-5	0.141	INTERGENIC
2L	9547595	2L_9547595_SNP [dm3] 2L_9547595_SNP [dm6]	T	G	7.962e^-5	0.141	DOWNSTREAM jp & 1 other INTERGENIC	transposable element FlyBase
2L	9944899	2L_9944899_SNP [dm3] 2L_9944899_SNP [dm6]	G	C	7.962e^-5	0.141	INTRON CG5853
2R	10505704	2R_10505704_SNP [dm3] 2R_14618199_SNP [dm6]	A	T	7.962e^-5	0.141	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med
2R	10505736	2R_10505736_SNP [dm3] 2R_14618231_SNP [dm6]	G	A	7.962e^-5	0.141	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10509128	2R_10509128_SNP [dm3] 2R_14621623_SNP [dm6]	C	A	7.962e^-5	0.141	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	10509129	2R_10509129_SNP [dm3] 2R_14621624_SNP [dm6]	G	C	7.962e^-5	0.141	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	10525753	2R_10525753_SNP [dm3] 2R_14638248_SNP [dm6]	C	T	7.962e^-5	0.141	UPSTREAM CG43236 & 1 other INTERGENIC
2R	10839315	2R_10839315_SNP [dm3] 2R_14951810_SNP [dm6]	G	A	7.962e^-5	0.141	SYNONYMOUS_CODING aPKC UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16760326	2R_16760326_SNP [dm3] 2R_20872821_SNP [dm6]	T	G	7.962e^-5	0.141	INTRON Ipk1
2R	16760338	2R_16760338_SNP [dm3] 2R_20872833_SNP [dm6]	C	T	7.962e^-5	0.141	INTRON Ipk1
2R	17583737	2R_17583737_SNP [dm3] 2R_21696232_SNP [dm6]	T	C	7.962e^-5	0.141	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
2R	19936340	2R_19936340_SNP [dm3] 2R_24048817_SNP [dm6]	G	A	7.962e^-5	0.141	NON_SYNONYMOUS_CODING gammaSnap1 UPSTREAM sei INTRON sei	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	2813858	2R_2813858_SNP [dm3] 2R_6926353_SNP [dm6]	G	T	7.962e^-5	0.141	INTRON mim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	2824365	2R_2824365_SNP [dm3] 2R_6936860_SNP [dm6]	C	T	7.962e^-5	0.141	INTRON mim	TF binding site mE1_TFBS_HSA
2R	2827432	2R_2827432_SNP [dm3] 2R_6939927_SNP [dm6]	A	G	7.962e^-5	0.141	INTRON mim
2R	2853608	2R_2853608_SNP [dm3] 2R_6966103_SNP [dm6]	G	A	7.962e^-5	0.141	INTRON mim & 1 other
2R	2856483	2R_2856483_SNP [dm3] 2R_6968978_SNP [dm6]	C	G	7.962e^-5	0.141	INTRON mim & 1 other
2R	2856575	2R_2856575_SNP [dm3] 2R_6969070_SNP [dm6]	G	A	7.962e^-5	0.141	INTRON mim & 1 other
2R	6963023	2R_6963023_SNP [dm3] 2R_11075518_SNP [dm6]	A	C	7.962e^-5	0.141	INTRON luna	TF binding site mE1_TFBS_HSA
2R	9971721	2R_9971721_SNP [dm3] 2R_14084216_SNP [dm6]	A	G	7.962e^-5	0.141	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	10719921	3L_10719921_SNP [dm3] 3L_10726821_SNP [dm6]	A	T	7.962e^-5	0.141	INTERGENIC
3L	10719922	3L_10719922_SNP [dm3] 3L_10726822_SNP [dm6]	T	C	7.962e^-5	0.141	INTERGENIC
3L	10719926	3L_10719926_SNP [dm3] 3L_10726826_SNP [dm6]	T	A	7.962e^-5	0.141	INTERGENIC

By genomic position
Variant impact
Gene name

pc_MB_Beta_Missing phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results