DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.002e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

15259 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11052262	2L_11052262_SNP [dm3] 2L_11052262_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTRON Samuel
2L	12806816	2L_12806816_SNP [dm3] 2L_12806816_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	DOWNSTREAM CR43818 INTERGENIC
2L	12909530	2L_12909530_SNP [dm3] 2L_12909530_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTERGENIC
2L	13845685	2L_13845685_SNP [dm3] 2L_13845685_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	UPSTREAM CG8997 INTRON CenG1A
2L	14952852	2L_14952852_SNP [dm3] 2L_14952852_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	INTRON CG42313
2L	14959397	2L_14959397_SNP [dm3] 2L_14959397_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTRON CG42313
2L	16333418	2L_16333418_SNP [dm3] 2L_16333418_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16409719	2L_16409719_SNP [dm3] 2L_16409719_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON CG5888
2L	2433664	2L_2433664_SNP [dm3] 2L_2433664_SNP [dm6]	A	C	9.620e^-245	1.789e^-240	INTRON dpp
2L	2433716	2L_2433716_SNP [dm3] 2L_2433716_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	INTRON dpp
2L	3881716	2L_3881716_SNP [dm3] 2L_3881716_SNP [dm6]	A	T	9.620e^-245	1.789e^-240	INTRON capu
2L	4016609	2L_4016609_SNP [dm3] 2L_4016609_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTERGENIC
2L	4065697	2L_4065697_SNP [dm3] 2L_4065697_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	INTRON ed
2L	4989843	2L_4989843_SNP [dm3] 2L_4989843_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON CG34126
2L	5410510	2L_5410510_SNP [dm3] 2L_5410510_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7178208	2L_7178208_SNP [dm3] 2L_7178208_SNP [dm6]	G	C	9.620e^-245	1.789e^-240	UPSTREAM CR44613 INTERGENIC
2L	8253912	2L_8253912_SNP [dm3] 2L_8253912_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	UPSTREAM CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2L	9459028	2L_9459028_SNP [dm3] 2L_9459028_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON numb
2R	11897690	2R_11897690_SNP [dm3] 2R_16010185_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTRON CG8389 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11897851	2R_11897851_SNP [dm3] 2R_16010346_SNP [dm6]	C	A	9.620e^-245	1.789e^-240	NON_SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11899588	2R_11899588_SNP [dm3] 2R_16012083_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	UPSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	11899912	2R_11899912_SNP [dm3] 2R_16012407_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	11899915	2R_11899915_SNP [dm3] 2R_16012410_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	11899960	2R_11899960_SNP [dm3] 2R_16012455_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG8389
2R	11899966	2R_11899966_SNP [dm3] 2R_16012461_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	14237917	2R_14237917_INS [dm3] 2R_18350412_INS [dm6]	A	AA	9.620e^-245	1.789e^-240	INTRON sbb
2R	17938009	2R_17938009_SNP [dm3] 2R_22050504_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTERGENIC
2R	19489317	2R_19489317_SNP [dm3] 2R_23601794_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19489318	2R_19489318_SNP [dm3] 2R_23601795_SNP [dm6]	T	G	9.620e^-245	1.789e^-240	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19897084	2R_19897084_SNP [dm3] 2R_24009561_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
2R	3228028	2R_3228028_SNP [dm3] 2R_7340523_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON Dscam1
2R	4922802	2R_4922802_SNP [dm3] 2R_9035297_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTERGENIC
2R	4933418	2R_4933418_SNP [dm3] 2R_9045913_SNP [dm6]	A	T	9.620e^-245	1.789e^-240	UTR_3_PRIME CG13743
2R	4937276	2R_4937276_DEL [dm3] 2R_9049771_DEL [dm6]	GCCTG	G	9.620e^-245	1.789e^-240	INTRON CG13743
2R	4937375	2R_4937375_SNP [dm3] 2R_9049870_SNP [dm6]	G	C	9.620e^-245	1.789e^-240	INTRON CG13743
2R	4941300	2R_4941300_SNP [dm3] 2R_9053795_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON CG13743
2R	4941661	2R_4941661_SNP [dm3] 2R_9054156_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON CG13743
2R	4943242	2R_4943242_SNP [dm3] 2R_9055737_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5387015	2R_5387015_SNP [dm3] 2R_9499510_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON Wnt2
2R	6016730	2R_6016730_SNP [dm3] 2R_10129225_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON gem	TF binding site mE1_TFBS_HSA
2R	7099514	2R_7099514_SNP [dm3] 2R_11212009_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7099547	2R_7099547_SNP [dm3] 2R_11212042_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7555697	2R_7555697_SNP [dm3] 2R_11668192_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTRON Roc2 & 1 other
2R	7557362	2R_7557362_SNP [dm3] 2R_11669857_SNP [dm6]	A	C	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8928200	2R_8928200_SNP [dm3] 2R_13040695_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10411298	3L_10411298_DEL [dm3] 3L_10418198_DEL [dm6]	TTGATAATTC	A	9.620e^-245	1.789e^-240	INTERGENIC
3L	10421794	3L_10421794_SNP [dm3] 3L_10428694_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	DOWNSTREAM Ir67b INTERGENIC
3L	10422181	3L_10422181_SNP [dm3] 3L_10429081_SNP [dm6]	C	A	9.620e^-245	1.789e^-240	DOWNSTREAM Ir67b INTERGENIC
3L	10422251	3L_10422251_DEL [dm3] 3L_10429151_DEL [dm6]	TCGTTTTGGC	ATAATA	9.620e^-245	1.789e^-240	DOWNSTREAM Ir67b INTERGENIC
3L	10423251	3L_10423251_SNP [dm3] 3L_10430151_SNP [dm6]	C	G	9.620e^-245	1.789e^-240	UTR_3_PRIME Ir67b
3L	10424794	3L_10424794_SNP [dm3] 3L_10431694_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	NON_SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
3L	10972009	3L_10972009_SNP [dm3] 3L_10978909_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	UPSTREAM CR45745 INTERGENIC
3L	11014401	3L_11014401_INS [dm3] 3L_11021301_INS [dm6]	AA	CGTCCGTTTTACTCC...	9.620e^-245	1.789e^-240	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11211240	3L_11211240_SNP [dm3] 3L_11218140_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTRON CG42671
3L	11226422	3L_11226422_SNP [dm3] 3L_11233322_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON Ir68a
3L	11226428	3L_11226428_SNP [dm3] 3L_11233328_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	SPLICE_SITE_REGION Ir68a INTRON Ir68a
3L	12444253	3L_12444253_SNP [dm3] 3L_12451153_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1368309	3L_1368309_SNP [dm3] 3L_1368309_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14603457	3L_14603457_SNP [dm3] 3L_14610357_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTERGENIC
3L	3032159	3L_3032159_SNP [dm3] 3L_3032159_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTERGENIC
3L	3928251	3L_3928251_SNP [dm3] 3L_3928251_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON Eip63F-1
3L	439825	3L_439825_SNP [dm3] 3L_439825_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTRON klar
3L	4579867	3L_4579867_DEL [dm3] 3L_4579867_DEL [dm6]	GATATTC	A	9.620e^-245	1.789e^-240	INTRON CG42540
3L	4579889	3L_4579889_SNP [dm3] 3L_4579889_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON CG42540
3L	4579893	3L_4579893_SNP [dm3] 3L_4579893_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON CG42540
3L	4982176	3L_4982176_SNP [dm3] 3L_4982176_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8623200	3L_8623200_SNP [dm3] 3L_8630100_SNP [dm6]	C	G	9.620e^-245	1.789e^-240	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9705751	3L_9705751_SNP [dm3] 3L_9712651_SNP [dm6]	G	T	9.620e^-245	1.789e^-240	INTRON SH3PX1	TF binding site mE1_TFBS_cnc
3R	15748644	3R_15748644_SNP [dm3] 3R_19922922_SNP [dm6]	G	C	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20783490	3R_20783490_SNP [dm3] 3R_24957768_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTERGENIC
3R	21390049	3R_21390049_SNP [dm3] 3R_25564327_SNP [dm6]	A	T	9.620e^-245	1.789e^-240	INTRON msi
3R	23861526	3R_23861526_SNP [dm3] 3R_28035804_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	INTRON CG34362
3R	23957068	3R_23957068_SNP [dm3] 3R_28131346_SNP [dm6]	A	T	9.620e^-245	1.789e^-240	INTERGENIC
3R	25274077	3R_25274077_SNP [dm3] 3R_29448355_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	25276285	3R_25276285_DEL [dm3] 3R_29450563_DEL [dm6]	TGAGCACCTCAGT...	T	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	25276304	3R_25276304_DEL [dm3] 3R_29450582_DEL [dm6]	AA	A	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	25276309	3R_25276309_SNP [dm3] 3R_29450587_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	25276341	3R_25276341_SNP [dm3] 3R_29450619_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	25276344	3R_25276344_SNP [dm3] 3R_29450622_SNP [dm6]	C	A	9.620e^-245	1.789e^-240	INTRON Ptp99A
3R	26042986	3R_26042986_SNP [dm3] 3R_30217264_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	DOWNSTREAM CecC INTERGENIC
3R	26048693	3R_26048693_SNP [dm3] 3R_30222971_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26391704	3R_26391704_SNP [dm3] 3R_30565982_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON tmod
3R	26391712	3R_26391712_SNP [dm3] 3R_30565990_SNP [dm6]	A	C	9.620e^-245	1.789e^-240	INTRON tmod
3R	26391743	3R_26391743_SNP [dm3] 3R_30566021_SNP [dm6]	A	C	9.620e^-245	1.789e^-240	INTRON tmod
3R	26562895	3R_26562895_SNP [dm3] 3R_30737173_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	INTERGENIC
3R	6435741	3R_6435741_SNP [dm3] 3R_10610019_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON hth	TF binding site mE1_TFBS_cad
X	10614941	X_10614941_SNP [dm3] X_10720908_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	INTRON CG32676	TF binding site mE1_TFBS_sens
X	10614944	X_10614944_SNP [dm3] X_10720911_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTRON CG32676	TF binding site mE1_TFBS_sens
X	10614945	X_10614945_DEL [dm3] X_10720912_DEL [dm6]	TA	T	9.620e^-245	1.789e^-240	INTRON CG32676	TF binding site mE1_TFBS_sens
X	17725823	X_17725823_SNP [dm3] X_17831790_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	UPSTREAM CR44691 INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	22211175	X_22211175_SNP [dm3] X_22809339_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	UTR_3_PRIME CG12446
X	4228300	X_4228300_SNP [dm3] X_4334267_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	INTRON norpA
X	8163403	X_8163403_SNP [dm3] X_8269370_SNP [dm6]	A	G	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
X	8163412	X_8163412_SNP [dm3] X_8269379_SNP [dm6]	C	T	9.620e^-245	1.789e^-240	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
X	8165414	X_8165414_SNP [dm3] X_8271381_SNP [dm6]	G	A	9.620e^-245	1.789e^-240	UTR_5_PRIME Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8165726	X_8165726_SNP [dm3] X_8271693_SNP [dm6]	T	C	9.620e^-245	1.789e^-240	UPSTREAM Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8165907	X_8165907_SNP [dm3] X_8271874_SNP [dm6]	T	A	9.620e^-245	1.789e^-240	UPSTREAM Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9857470	X_9857470_INS [dm3] X_9963437_INS [dm6]	A	AGCAGCAATGGGCGTATTAT...	9.620e^-245	1.789e^-240	DOWNSTREAM CG1791 INTERGENIC
X	9857474	X_9857474_SNP [dm3] X_9963441_SNP [dm6]	G	C	9.620e^-245	1.789e^-240	DOWNSTREAM CG1791 INTERGENIC
2R	4924477	2R_4924477_SNP [dm3] 2R_9036972_SNP [dm6]	A	T	6.831e^-237	6.735e^-233	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11957670	3R_11957670_SNP [dm3] 3R_16131948_SNP [dm6]	A	T	6.831e^-237	6.735e^-233	INTRON Sb
X	8165827	X_8165827_SNP [dm3] X_8271794_SNP [dm6]	A	T	6.831e^-237	6.735e^-233	UPSTREAM Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16542952	2R_16542952_SNP [dm3] 2R_20655447_SNP [dm6]	T	A	6.839e^-237	6.735e^-233	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2L	13842228	2L_13842228_SNP [dm3] 2L_13842228_SNP [dm6]	A	T	6.855e^-237	6.735e^-233	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13842229	2L_13842229_SNP [dm3] 2L_13842229_SNP [dm6]	C	T	6.855e^-237	6.735e^-233	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14600238	2L_14600238_SNP [dm3] 2L_14600238_SNP [dm6]	G	T	6.855e^-237	6.735e^-233	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bb DOWNSTREAM tRNA:P:35Bc	TF binding site mE1_TFBS_HSA
2L	6761409	2L_6761409_SNP [dm3] 2L_6761409_SNP [dm6]	G	C	6.855e^-237	6.735e^-233	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
2L	6763106	2L_6763106_SNP [dm3] 2L_6763106_SNP [dm6]	G	A	6.855e^-237	6.735e^-233	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	6766552	2L_6766552_SNP [dm3] 2L_6766552_SNP [dm6]	A	T	6.855e^-237	6.735e^-233	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8979759	2L_8979759_SNP [dm3] 2L_8979759_SNP [dm6]	T	G	6.855e^-237	6.735e^-233	UPSTREAM CG18662 INTRON CG13101
2L	9153907	2L_9153907_SNP [dm3] 2L_9153907_SNP [dm6]	G	A	6.855e^-237	6.735e^-233	INTRON CG32982
2R	16566045	2R_16566045_SNP [dm3] 2R_20678540_SNP [dm6]	G	T	6.855e^-237	6.735e^-233	INTERGENIC
3L	1276024	3L_1276024_SNP [dm3] 3L_1276024_SNP [dm6]	A	T	6.855e^-237	6.735e^-233	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
3L	1325618	3L_1325618_INS [dm3] 3L_1325618_INS [dm6]	T	TGGAATAT	6.855e^-237	6.735e^-233	INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9497490	3L_9497490_SNP [dm3] 3L_9504390_SNP [dm6]	A	T	6.855e^-237	6.735e^-233	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21465518	3R_21465518_DEL [dm3] 3R_25639796_DEL [dm6]	TCACAGTT	T	6.855e^-237	6.735e^-233	UTR_5_PRIME jigr1 INTRON jigr1
3R	23634045	3R_23634045_SNP [dm3] 3R_27808323_SNP [dm6]	A	G	6.855e^-237	6.735e^-233	INTRON CG34353
3R	23784080	3R_23784080_SNP [dm3] 3R_27958358_SNP [dm6]	T	G	6.855e^-237	6.735e^-233	NON_SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23784257	3R_23784257_SNP [dm3] 3R_27958535_SNP [dm6]	C	A	6.855e^-237	6.735e^-233	NON_SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25274069	3R_25274069_SNP [dm3] 3R_29448347_SNP [dm6]	A	G	6.855e^-237	6.735e^-233	INTRON Ptp99A
3R	25277816	3R_25277816_SNP [dm3] 3R_29452094_SNP [dm6]	T	A	6.855e^-237	6.735e^-233	INTRON Ptp99A
3R	25360397	3R_25360397_DEL [dm3] 3R_29534675_DEL [dm6]	AAATATACA	A	6.855e^-237	6.735e^-233	EXON CR43613	TF binding site mE1_TFBS_chinmo
X	10972512	X_10972512_SNP [dm3] X_11078479_SNP [dm6]	G	A	6.855e^-237	6.735e^-233	SYNONYMOUS_CODING sev UPSTREAM CR44358
X	13137386	X_13137386_SNP [dm3] X_13243353_SNP [dm6]	C	T	6.855e^-237	6.735e^-233	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137447	X_13137447_SNP [dm3] X_13243414_SNP [dm6]	G	T	6.855e^-237	6.735e^-233	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2928974	X_2928974_SNP [dm3] X_3034941_SNP [dm6]	C	T	6.855e^-237	6.735e^-233	INTRON kirre
X	4664840	X_4664840_SNP [dm3] X_4770807_SNP [dm6]	C	T	6.855e^-237	6.735e^-233	SYNONYMOUS_CODING Bteb2 UPSTREAM CG15472	TF binding site BDTNP1_TFBS_twi
X	9043237	X_9043237_SNP [dm3] X_9149204_SNP [dm6]	T	C	6.855e^-237	6.735e^-233	UPSTREAM dalao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	9083931	X_9083931_SNP [dm3] X_9189898_SNP [dm6]	A	G	6.855e^-237	6.735e^-233	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	9084132	X_9084132_DEL [dm3] X_9190099_DEL [dm6]	CACT	C	6.855e^-237	6.735e^-233	DOWNSTREAM mei-P26
3L	13470005	3L_13470005_SNP [dm3] 3L_13476905_SNP [dm6]	A	C	6.867e^-237	6.735e^-233	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26003927	3R_26003927_INS [dm3] 3R_30178205_INS [dm6]	G	GG	6.867e^-237	6.735e^-233	UPSTREAM CG1983 INTRON CG15530	TF binding site mE1_TFBS_chinmo
2L	11033037	2L_11033037_SNP [dm3] 2L_11033037_SNP [dm6]	G	T	6.890e^-237	6.735e^-233	INTRON Samuel
2L	19385030	2L_19385030_SNP [dm3] 2L_19385030_SNP [dm6]	A	G	6.890e^-237	6.735e^-233	SYNONYMOUS_CODING fon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19385036	2L_19385036_SNP [dm3] 2L_19385036_SNP [dm6]	C	T	6.890e^-237	6.735e^-233	SYNONYMOUS_CODING fon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11901308	2R_11901308_SNP [dm3] 2R_16013803_SNP [dm6]	G	T	6.890e^-237	6.735e^-233	UTR_3_PRIME CG8389 DOWNSTREAM Prosbeta1
2R	1377578	2R_1377578_SNP [dm3] 2R_5490073_SNP [dm6]	C	T	6.890e^-237	6.735e^-233	INTRON CG30440
2R	14781253	2R_14781253_SNP [dm3] 2R_18893748_SNP [dm6]	G	C	6.890e^-237	6.735e^-233	INTRON sano
2R	14781338	2R_14781338_SNP [dm3] 2R_18893833_SNP [dm6]	T	G	6.890e^-237	6.735e^-233	INTRON sano
2R	19361009	2R_19361009_SNP [dm3] 2R_23473486_SNP [dm6]	T	C	6.890e^-237	6.735e^-233	NON_SYNONYMOUS_CODING Or59c INTRON CG43795
3L	11019068	3L_11019068_SNP [dm3] 3L_11025968_SNP [dm6]	T	G	6.890e^-237	6.735e^-233	SPLICE_SITE_REGION CG32079 INTRON CG32079
3L	5405257	3L_5405257_SNP [dm3] 3L_5412157_SNP [dm6]	T	A	6.890e^-237	6.735e^-233	INTERGENIC
3R	23551328	3R_23551328_SNP [dm3] 3R_27725606_SNP [dm6]	G	A	6.890e^-237	6.735e^-233	INTERGENIC
3R	9527469	3R_9527469_SNP [dm3] 3R_13701747_SNP [dm6]	C	T	6.890e^-237	6.735e^-233	SYNONYMOUS_CODING ninaB UPSTREAM f-cup	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9528244	3R_9528244_SNP [dm3] 3R_13702522_SNP [dm6]	G	A	6.890e^-237	6.735e^-233	NON_SYNONYMOUS_CODING ninaB DOWNSTREAM Adgf-D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9536019	3R_9536019_SNP [dm3] 3R_13710297_SNP [dm6]	A	T	6.890e^-237	6.735e^-233	UPSTREAM CG31469 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9536542	3R_9536542_SNP [dm3] 3R_13710820_SNP [dm6]	T	A	6.890e^-237	6.735e^-233	UTR_5_PRIME primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9648075	3R_9648075_SNP [dm3] 3R_13822353_SNP [dm6]	T	A	6.890e^-237	6.735e^-233	INTERGENIC
3R	9648079	3R_9648079_SNP [dm3] 3R_13822357_SNP [dm6]	T	A	6.890e^-237	6.735e^-233	INTERGENIC
3R	9648091	3R_9648091_DEL [dm3] 3R_13822369_DEL [dm6]	CG	C	6.890e^-237	6.735e^-233	INTERGENIC
2L	14944795	2L_14944795_SNP [dm3] 2L_14944795_SNP [dm6]	G	A	6.934e^-237	6.735e^-233	INTRON CG42313
2R	11902331	2R_11902331_SNP [dm3] 2R_16014826_SNP [dm6]	G	A	6.934e^-237	6.735e^-233	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	4927711	2R_4927711_SNP [dm3] 2R_9040206_SNP [dm6]	C	T	6.934e^-237	6.735e^-233	SYNONYMOUS_CODING Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4928915	2R_4928915_SNP [dm3] 2R_9041410_SNP [dm6]	G	A	6.934e^-237	6.735e^-233	SYNONYMOUS_CODING Ance-4 DOWNSTREAM PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5382371	2R_5382371_SNP [dm3] 2R_9494866_SNP [dm6]	G	T	6.934e^-237	6.735e^-233	UTR_5_PRIME Wnt2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	397972	3L_397972_SNP [dm3] 3L_397972_SNP [dm6]	T	C	6.934e^-237	6.735e^-233	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	397975	3L_397975_SNP [dm3] 3L_397975_SNP [dm6]	T	A	6.934e^-237	6.735e^-233	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26391750	3R_26391750_SNP [dm3] 3R_30566028_SNP [dm6]	T	C	6.934e^-237	6.735e^-233	INTRON tmod
2L	7926317	2L_7926317_SNP [dm3] 2L_7926317_SNP [dm6]	G	T	7.001e^-237	6.735e^-233	INTRON Snoo
2L	7926333	2L_7926333_SNP [dm3] 2L_7926333_SNP [dm6]	A	T	7.001e^-237	6.735e^-233	INTRON Snoo
2L	8280950	2L_8280950_SNP [dm3] 2L_8280950_SNP [dm6]	G	A	7.001e^-237	6.735e^-233	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	8281106	2L_8281106_SNP [dm3] 2L_8281106_SNP [dm6]	C	T	7.001e^-237	6.735e^-233	INTRON Btk29A	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr
2R	4401366	2R_4401366_SNP [dm3] 2R_8513861_SNP [dm6]	A	G	7.001e^-237	6.735e^-233	INTRON mtt
3L	11224121	3L_11224121_DEL [dm3] 3L_11231021_DEL [dm6]	CTAAGTG	A	7.001e^-237	6.735e^-233	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	26391868	3R_26391868_SNP [dm3] 3R_30566146_SNP [dm6]	G	A	7.001e^-237	6.735e^-233	INTRON tmod
2R	18306261	2R_18306261_SNP [dm3] 2R_22418756_SNP [dm6]	T	C	7.137e^-237	6.735e^-233	UTR_3_PRIME qkr58E-2 DOWNSTREAM mRpS29 & 1 other
2R	7554312	2R_7554312_SNP [dm3] 2R_11666807_SNP [dm6]	C	G	7.137e^-237	6.735e^-233	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7554316	2R_7554316_SNP [dm3] 2R_11666811_SNP [dm6]	C	T	7.137e^-237	6.735e^-233	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13620444	3R_13620444_SNP [dm3] 3R_17794722_SNP [dm6]	T	C	7.137e^-237	6.735e^-233	UPSTREAM CG7713 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11908622	2R_11908622_SNP [dm3] 2R_16021117_SNP [dm6]	T	C	7.252e^-237	6.735e^-233	INTRON CG8399
2R	17433132	2R_17433132_SNP [dm3] 2R_21545627_SNP [dm6]	C	T	7.252e^-237	6.735e^-233	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9039327	X_9039327_DEL [dm3] X_9145294_DEL [dm6]	AACA	G	7.252e^-237	6.735e^-233	INTRON CG7065
2L	12909578	2L_12909578_SNP [dm3] 2L_12909578_SNP [dm6]	T	A	8.085e^-237	6.735e^-233	INTERGENIC
2L	2743851	2L_2743851_SNP [dm3] 2L_2743851_SNP [dm6]	T	G	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
2L	3509878	2L_3509878_SNP [dm3] 2L_3509878_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
2L	5532178	2L_5532178_SNP [dm3] 2L_5532178_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	UTR_5_PRIME CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	5766511	2L_5766511_SNP [dm3] 2L_5766511_SNP [dm6]	A	T	8.085e^-237	6.735e^-233	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
2L	5766596	2L_5766596_SNP [dm3] 2L_5766596_SNP [dm6]	G	A	8.085e^-237	6.735e^-233	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
2L	5768089	2L_5768089_SNP [dm3] 2L_5768089_SNP [dm6]	A	C	8.085e^-237	6.735e^-233	UTR_3_PRIME CG9171 DOWNSTREAM CG9171
2L	7204343	2L_7204343_SNP [dm3] 2L_7204343_SNP [dm6]	G	T	8.085e^-237	6.735e^-233	UPSTREAM CG4502 DOWNSTREAM CG13784 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	8812283	2L_8812283_SNP [dm3] 2L_8812283_SNP [dm6]	A	C	8.085e^-237	6.735e^-233	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8817881	2L_8817881_DEL [dm3] 2L_8817881_DEL [dm6]	GTTCAGATCGG...	G	8.085e^-237	6.735e^-233	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8818346	2L_8818346_SNP [dm3] 2L_8818346_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	8827975	2L_8827975_SNP [dm3] 2L_8827975_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8828017	2L_8828017_SNP [dm3] 2L_8828017_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11896500	2R_11896500_SNP [dm3] 2R_16008995_SNP [dm6]	G	A	8.085e^-237	6.735e^-233	DOWNSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12305260	2R_12305260_SNP [dm3] 2R_16417755_SNP [dm6]	A	G	8.085e^-237	6.735e^-233	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	17347123	2R_17347123_SNP [dm3] 2R_21459618_SNP [dm6]	G	A	8.085e^-237	6.735e^-233	INTRON Sdc
2R	17374138	2R_17374138_SNP [dm3] 2R_21486633_SNP [dm6]	G	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
2R	17570874	2R_17570874_SNP [dm3] 2R_21683369_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	INTRON CG30263	TF binding site mE1_TFBS_cad
2R	4788470	2R_4788470_SNP [dm3] 2R_8900965_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	NON_SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	4945325	2R_4945325_SNP [dm3] 2R_9057820_SNP [dm6]	G	T	8.085e^-237	6.735e^-233	INTRON CG13743
2R	5579666	2R_5579666_SNP [dm3] 2R_9692161_SNP [dm6]	T	A	8.085e^-237	6.735e^-233	INTRON Uba1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	7414603	2R_7414603_SNP [dm3] 2R_11527098_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10423389	3L_10423389_SNP [dm3] 3L_10430289_SNP [dm6]	T	G	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING Ir67b
3L	11651735	3L_11651735_SNP [dm3] 3L_11658635_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	INTRON CG32085
3L	3943843	3L_3943843_SNP [dm3] 3L_3943843_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	4830613	3L_4830613_SNP [dm3] 3L_4830613_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4830634	3L_4830634_SNP [dm3] 3L_4830634_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6033390	3L_6033390_SNP [dm3] 3L_6040290_SNP [dm6]	A	G	8.085e^-237	6.735e^-233	DOWNSTREAM Jon65Aiv INTERGENIC
3L	6041230	3L_6041230_SNP [dm3] 3L_6048130_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	INTERGENIC
3L	6041599	3L_6041599_SNP [dm3] 3L_6048499_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	INTERGENIC
3L	6052261	3L_6052261_SNP [dm3] 3L_6059161_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	7296038	3L_7296038_SNP [dm3] 3L_7302938_SNP [dm6]	G	T	8.085e^-237	6.735e^-233	INTRON unc-13-4A
3L	8622352	3L_8622352_SNP [dm3] 3L_8629252_SNP [dm6]	G	A	8.085e^-237	6.735e^-233	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_da
3L	8631128	3L_8631128_SNP [dm3] 3L_8638028_SNP [dm6]	A	T	8.085e^-237	6.735e^-233	INTRON Zasp66
3L	8632590	3L_8632590_SNP [dm3] 3L_8639490_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	UPSTREAM Cpr66D DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	13400362	3R_13400362_SNP [dm3] 3R_17574640_SNP [dm6]	T	G	8.085e^-237	6.735e^-233	INTERGENIC
3R	14146229	3R_14146229_SNP [dm3] 3R_18320507_SNP [dm6]	A	G	8.085e^-237	6.735e^-233	INTRON CG31235
3R	14146282	3R_14146282_SNP [dm3] 3R_18320560_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	INTRON CG31235
3R	15145928	3R_15145928_SNP [dm3] 3R_19320206_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20472460	3R_20472460_SNP [dm3] 3R_24646738_SNP [dm6]	C	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20472508	3R_20472508_SNP [dm3] 3R_24646786_SNP [dm6]	G	T	8.085e^-237	6.735e^-233	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25276638	3R_25276638_DEL [dm3] 3R_29450916_DEL [dm6]	AGGGATAA	A	8.085e^-237	6.735e^-233	INTRON Ptp99A
3R	26393568	3R_26393568_SNP [dm3] 3R_30567846_SNP [dm6]	A	T	8.085e^-237	6.735e^-233	INTRON tmod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26637888	3R_26637888_SNP [dm3] 3R_30812166_SNP [dm6]	C	G	8.085e^-237	6.735e^-233	INTRON cindr	TF binding site mE1_TFBS_sens
3R	6453086	3R_6453086_SNP [dm3] 3R_10627364_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10179220	X_10179220_SNP [dm3] X_10285187_SNP [dm6]	C	A	8.085e^-237	6.735e^-233	INTRON alpha-Man-I
X	10972592	X_10972592_SNP [dm3] X_11078559_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	UPSTREAM CR44358 INTRON sev
X	14786545	X_14786545_SNP [dm3] X_14892512_SNP [dm6]	T	A	8.085e^-237	6.735e^-233	INTRON Flo2 & 1 other
X	8165927	X_8165927_SNP [dm3] X_8271894_SNP [dm6]	T	C	8.085e^-237	6.735e^-233	UPSTREAM Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12169463	2L_12169463_SNP [dm3] 2L_12169463_SNP [dm6]	A	T	1.111e^-14	9.217e^-11	UTR_3_PRIME CG31760
2L	10364630	2L_10364630_SNP [dm3] 2L_10364630_SNP [dm6]	C	T	1.803e^-14	1.482e^-10	DOWNSTREAM pim INTRON lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	10364650	2L_10364650_SNP [dm3] 2L_10364650_SNP [dm6]	C	T	1.803e^-14	1.482e^-10	DOWNSTREAM pim INTRON lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3507804	2L_3507804_SNP [dm3] 2L_3507804_SNP [dm6]	T	G	5.520e^-14	4.517e^-10	UTR_5_PRIME tim UPSTREAM tim & 1 other INTRON tim	TF binding site BDTNP1_TFBS_dl
2L	3507776	2L_3507776_SNP [dm3] 2L_3507776_SNP [dm6]	T	A	6.146e^-14	5.006e^-10	UTR_5_PRIME tim UPSTREAM tim & 1 other INTRON tim	TF binding site BDTNP1_TFBS_dl
2L	13207499	2L_13207499_SNP [dm3] 2L_13207499_SNP [dm6]	G	T	1.038e^-13	8.420e^-10	INTRON Pect
2L	3507803	2L_3507803_SNP [dm3] 2L_3507803_SNP [dm6]	T	G	1.435e^-13	1.159e^-9	UTR_5_PRIME tim UPSTREAM tim & 1 other INTRON tim	TF binding site BDTNP1_TFBS_dl
2L	12411389	2L_12411389_SNP [dm3] 2L_12411389_SNP [dm6]	A	G	1.503e^-13	1.203e^-9	INTRON vir-1
2L	3507752	2L_3507752_SNP [dm3] 2L_3507752_SNP [dm6]	A	G	1.503e^-13	1.203e^-9	UPSTREAM tim & 1 other INTRON tim	TF binding site BDTNP1_TFBS_dl
2R	11897675	2R_11897675_SNP [dm3] 2R_16010170_SNP [dm6]	G	T	2.843e^-13	2.237e^-9	INTRON CG8389 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16542916	2R_16542916_SNP [dm3] 2R_20655411_SNP [dm6]	A	T	2.843e^-13	2.237e^-9	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16542918	2R_16542918_SNP [dm3] 2R_20655413_SNP [dm6]	G	A	2.843e^-13	2.237e^-9	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3L	20703443	3L_20703443_SNP [dm3] 3L_20710343_SNP [dm6]	C	T	2.843e^-13	2.237e^-9	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	20703592	3L_20703592_SNP [dm3] 3L_20710492_SNP [dm6]	G	A	7.725e^-13	6.052e^-9	INTERGENIC	regulatory region REDfly_CRMs
3R	13644616	3R_13644616_SNP [dm3] 3R_17818894_SNP [dm6]	A	C	2.887e^-12	2.252e^-8	INTRON tinc
2L	7526090	2L_7526090_SNP [dm3] 2L_7526090_SNP [dm6]	G	C	1.751e^-11	1.355e^-7	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9627070	3L_9627070_SNP [dm3] 3L_9633970_SNP [dm6]	G	A	1.751e^-11	1.355e^-7	INTRON fry	TF binding site mE1_TFBS_cad
2L	19010021	2L_19010021_SNP [dm3] 2L_19010021_SNP [dm6]	G	A	2.853e^-11	2.186e^-7	UPSTREAM RpL30 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8280953	2L_8280953_SNP [dm3] 2L_8280953_SNP [dm6]	G	C	2.853e^-11	2.186e^-7	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	3562491	2L_3562491_SNP [dm3] 2L_3562491_SNP [dm6]	A	T	2.956e^-11	2.186e^-7	DOWNSTREAM CR44747 EXON CR44309
2L	3563489	2L_3563489_SNP [dm3] 2L_3563489_SNP [dm6]	G	C	2.956e^-11	2.186e^-7	DOWNSTREAM CR44309 EXON CR44747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8330729	2R_8330729_SNP [dm3] 2R_12443224_SNP [dm6]	A	G	2.956e^-11	2.186e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8332722	2R_8332722_SNP [dm3] 2R_12445217_SNP [dm6]	A	G	2.956e^-11	2.186e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8332754	2R_8332754_SNP [dm3] 2R_12445249_SNP [dm6]	A	C	2.956e^-11	2.186e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8332909	2R_8332909_SNP [dm3] 2R_12445404_SNP [dm6]	G	C	2.956e^-11	2.186e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8333600	2R_8333600_SNP [dm3] 2R_12446095_SNP [dm6]	A	T	2.956e^-11	2.186e^-7	INTRON Dyb
2R	8334014	2R_8334014_SNP [dm3] 2R_12446509_SNP [dm6]	T	C	2.956e^-11	2.186e^-7	INTRON Dyb	transposable element FlyBase
2R	8334897	2R_8334897_SNP [dm3] 2R_12447392_SNP [dm6]	T	A	2.956e^-11	2.186e^-7	INTRON Dyb
2L	1795806	2L_1795806_SNP [dm3] 2L_1795806_SNP [dm6]	C	A	3.362e^-11	2.408e^-7	UPSTREAM Gr22a INTERGENIC
2L	19011837	2L_19011837_DEL [dm3] 2L_19011837_DEL [dm6]	TCGTT	T	3.362e^-11	2.408e^-7	UPSTREAM CR45292 DOWNSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19011865	2L_19011865_SNP [dm3] 2L_19011865_SNP [dm6]	G	A	3.362e^-11	2.408e^-7	UPSTREAM CR45292 DOWNSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7932476	2L_7932476_SNP [dm3] 2L_7932476_SNP [dm6]	T	G	3.362e^-11	2.408e^-7	INTRON Snoo
2L	9611375	2L_9611375_SNP [dm3] 2L_9611375_SNP [dm6]	G	A	3.362e^-11	2.408e^-7	INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14884754	2R_14884754_SNP [dm3] 2R_18997249_SNP [dm6]	C	A	3.362e^-11	2.408e^-7	NON_SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10966107	3L_10966107_SNP [dm3] 3L_10973007_SNP [dm6]	T	C	3.362e^-11	2.408e^-7	SYNONYMOUS_CODING CG14147
X	7114398	X_7114398_DEL [dm3] X_7220365_DEL [dm6]	TCGTTATTT	T	3.362e^-11	2.408e^-7	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	26232093	3R_26232093_SNP [dm3] 3R_30406371_SNP [dm6]	C	T	3.646e^-11	2.602e^-7	INTERGENIC
2L	18989294	2L_18989294_SNP [dm3] 2L_18989294_SNP [dm6]	A	G	5.208e^-11	3.702e^-7	NON_SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_sens
2L	14960875	2L_14960875_SNP [dm3] 2L_14960875_SNP [dm6]	G	A	5.835e^-11	4.132e^-7	INTRON CG42313
2R	15832471	2R_15832471_SNP [dm3] 2R_19944966_SNP [dm6]	G	C	6.362e^-11	4.488e^-7	UTR_5_PRIME CG43195 UTR_3_PRIME CG42690 DOWNSTREAM CG42691
2L	5770177	2L_5770177_SNP [dm3] 2L_5770177_SNP [dm6]	A	G	6.490e^-11	4.543e^-7	SYNONYMOUS_CODING CG9171 INTRON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9459801	2L_9459801_SNP [dm3] 2L_9459801_SNP [dm6]	T	G	6.490e^-11	4.543e^-7	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3881861	2L_3881861_SNP [dm3] 2L_3881861_SNP [dm6]	A	G	6.584e^-11	4.574e^-7	INTRON capu
2L	7931203	2L_7931203_DEL [dm3] 2L_7931203_DEL [dm6]	CGC	C	6.584e^-11	4.574e^-7	INTRON Snoo
2R	6526818	2R_6526818_SNP [dm3] 2R_10639313_SNP [dm6]	G	A	6.895e^-11	4.754e^-7	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	10962952	3L_10962952_SNP [dm3] 3L_10969852_SNP [dm6]	T	C	6.895e^-11	4.754e^-7	INTERGENIC
2L	2744049	2L_2744049_SNP [dm3] 2L_2744049_SNP [dm6]	T	C	7.368e^-11	4.969e^-7	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3496752	2L_3496752_SNP [dm3] 2L_3496752_SNP [dm6]	T	C	7.368e^-11	4.969e^-7	INTRON tim
2L	8800581	2L_8800581_SNP [dm3] 2L_8800581_SNP [dm6]	T	C	7.368e^-11	4.969e^-7	INTERGENIC
2L	8801108	2L_8801108_SNP [dm3] 2L_8801108_SNP [dm6]	G	A	7.368e^-11	4.969e^-7	INTERGENIC
2L	8801228	2L_8801228_SNP [dm3] 2L_8801228_SNP [dm6]	G	T	7.368e^-11	4.969e^-7	INTERGENIC
2L	8836901	2L_8836901_SNP [dm3] 2L_8836901_SNP [dm6]	C	T	7.368e^-11	4.969e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8768147	2L_8768147_SNP [dm3] 2L_8768147_SNP [dm6]	G	A	9.270e^-11	5.670e^-7	INTRON CG9463
2R	16542904	2R_16542904_SNP [dm3] 2R_20655399_SNP [dm6]	A	G	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543034	2R_16543034_SNP [dm3] 2R_20655529_SNP [dm6]	T	A	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543049	2R_16543049_SNP [dm3] 2R_20655544_SNP [dm6]	C	A	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543053	2R_16543053_INS [dm3] 2R_20655548_INS [dm6]	G	TTT	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543080	2R_16543080_SNP [dm3] 2R_20655575_SNP [dm6]	C	T	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543086	2R_16543086_SNP [dm3] 2R_20655581_SNP [dm6]	T	C	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543123	2R_16543123_SNP [dm3] 2R_20655618_SNP [dm6]	G	A	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	16543135	2R_16543135_DEL [dm3] 2R_20655630_DEL [dm6]	CAAAGGTGTTTGTTT...	C	9.270e^-11	5.670e^-7	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	3253700	2R_3253700_SNP [dm3] 2R_7366195_SNP [dm6]	C	T	9.270e^-11	5.670e^-7	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4922403	2R_4922403_SNP [dm3] 2R_9034898_SNP [dm6]	T	A	9.270e^-11	5.670e^-7	INTERGENIC
2R	4949841	2R_4949841_SNP [dm3] 2R_9062336_SNP [dm6]	C	T	9.270e^-11	5.670e^-7	UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
2R	4949940	2R_4949940_SNP [dm3] 2R_9062435_SNP [dm6]	C	A	9.270e^-11	5.670e^-7	UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
2R	4959017	2R_4959017_SNP [dm3] 2R_9071512_SNP [dm6]	T	C	9.270e^-11	5.670e^-7	INTRON ana	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_cad
2R	4959826	2R_4959826_SNP [dm3] 2R_9072321_SNP [dm6]	C	T	9.270e^-11	5.670e^-7	INTRON ana	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5508708	2R_5508708_SNP [dm3] 2R_9621203_SNP [dm6]	T	G	9.270e^-11	5.670e^-7	UPSTREAM mir-307b DOWNSTREAM mir-307a INTRON Mmp2
2R	6181052	2R_6181052_SNP [dm3] 2R_10293547_SNP [dm6]	A	G	9.270e^-11	5.670e^-7	INTRON CAP
2R	6181056	2R_6181056_SNP [dm3] 2R_10293551_SNP [dm6]	T	A	9.270e^-11	5.670e^-7	INTRON CAP
2R	7560777	2R_7560777_SNP [dm3] 2R_11673272_SNP [dm6]	C	T	9.270e^-11	5.670e^-7	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7587578	2R_7587578_SNP [dm3] 2R_11700073_SNP [dm6]	A	T	9.270e^-11	5.670e^-7	DOWNSTREAM Ir48b EXON Ir48a
2R	8334794	2R_8334794_SNP [dm3] 2R_12447289_SNP [dm6]	A	T	9.270e^-11	5.670e^-7	INTRON Dyb
2R	8334887	2R_8334887_SNP [dm3] 2R_12447382_SNP [dm6]	T	C	9.270e^-11	5.670e^-7	INTRON Dyb
2R	8334962	2R_8334962_SNP [dm3] 2R_12447457_SNP [dm6]	A	C	9.270e^-11	5.670e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8334967	2R_8334967_DEL [dm3] 2R_12447462_DEL [dm6]	AC	A	9.270e^-11	5.670e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8334971	2R_8334971_DEL [dm3] 2R_12447466_DEL [dm6]	AC	A	9.270e^-11	5.670e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8334977	2R_8334977_SNP [dm3] 2R_12447472_SNP [dm6]	A	G	9.270e^-11	5.670e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	8335125	2R_8335125_SNP [dm3] 2R_12447620_SNP [dm6]	G	A	9.270e^-11	5.670e^-7	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13839360	3R_13839360_SNP [dm3] 3R_18013638_SNP [dm6]	G	A	9.270e^-11	5.670e^-7	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
2L	18991607	2L_18991607_SNP [dm3] 2L_18991607_SNP [dm6]	A	G	1.201e^-10	7.324e^-7	NON_SYNONYMOUS_CODING CG15169	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14969294	2L_14969294_SNP [dm3] 2L_14969294_SNP [dm6]	A	G	1.209e^-10	7.347e^-7	INTRON CG42313
2L	1207770	2L_1207770_SNP [dm3] 2L_1207770_SNP [dm6]	C	A	1.372e^-10	8.310e^-7	INTERGENIC
3L	8894894	3L_8894894_SNP [dm3] 3L_8901794_SNP [dm6]	T	C	1.393e^-10	8.384e^-7	UPSTREAM TrpA1 INTRON TrpA1
3L	8895494	3L_8895494_SNP [dm3] 3L_8902394_SNP [dm6]	A	G	1.393e^-10	8.384e^-7	UPSTREAM TrpA1 & 1 other INTRON TrpA1
3L	9107512	3L_9107512_SNP [dm3] 3L_9114412_SNP [dm6]	C	T	1.509e^-10	9.052e^-7	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8334951	2R_8334951_SNP [dm3] 2R_12447446_SNP [dm6]	T	C	1.604e^-10	9.555e^-7	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	9301525	3L_9301525_SNP [dm3] 3L_9308425_SNP [dm6]	G	A	1.604e^-10	9.555e^-7	INTERGENIC
3R	14721301	3R_14721301_SNP [dm3] 3R_18895579_SNP [dm6]	T	C	1.670e^-10	9.852e^-7	INTERGENIC
3R	18104356	3R_18104356_SNP [dm3] 3R_22278634_SNP [dm6]	A	C	1.670e^-10	9.852e^-7	SPLICE_SITE_REGION SKIP INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26572883	3R_26572883_SNP [dm3] 3R_30747161_SNP [dm6]	A	T	1.670e^-10	9.852e^-7	UPSTREAM Npc2h EXON CR43238
2R	5453705	2R_5453705_SNP [dm3] 2R_9566200_SNP [dm6]	T	A	1.819e^-10	1.070e^-6	UTR_3_PRIME Not1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	4946799	3L_4946799_SNP [dm3] 3L_4946799_SNP [dm6]	G	C	1.862e^-10	1.084e^-6	INTRON Con
2L	5818032	2L_5818032_SNP [dm3] 2L_5818032_SNP [dm6]	C	T	1.878e^-10	1.084e^-6	UTR_3_PRIME CG31644
2L	5818034	2L_5818034_MNP [dm3] 2L_5818034_MNP [dm6]	GTCGG	TGATC	1.878e^-10	1.084e^-6	UTR_3_PRIME CG31644
2L	8979807	2L_8979807_SNP [dm3] 2L_8979807_SNP [dm6]	A	G	1.878e^-10	1.084e^-6	UPSTREAM CG18662 INTRON CG13101
3L	447351	3L_447351_SNP [dm3] 3L_447351_SNP [dm6]	C	A	1.878e^-10	1.084e^-6	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14043333	3R_14043333_SNP [dm3] 3R_18217611_SNP [dm6]	T	A	1.878e^-10	1.084e^-6	DOWNSTREAM CG7183 INTRON CG14314	TF binding site mE1_TFBS_cad
2L	8331158	2L_8331158_SNP [dm3] 2L_8331158_SNP [dm6]	T	G	1.954e^-10	1.124e^-6	INTRON CG14275
2L	11345447	2L_11345447_SNP [dm3] 2L_11345447_SNP [dm6]	G	A	2.101e^-10	1.179e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	2743578	2L_2743578_SNP [dm3] 2L_2743578_SNP [dm6]	G	T	2.101e^-10	1.179e^-6	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	2743581	2L_2743581_SNP [dm3] 2L_2743581_SNP [dm6]	G	C	2.101e^-10	1.179e^-6	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	8768046	2L_8768046_SNP [dm3] 2L_8768046_SNP [dm6]	C	T	2.101e^-10	1.179e^-6	SYNONYMOUS_CODING CG9463
2R	12046971	2R_12046971_SNP [dm3] 2R_16159466_SNP [dm6]	G	A	2.101e^-10	1.179e^-6	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16543042	2R_16543042_SNP [dm3] 2R_20655537_SNP [dm6]	G	C	2.101e^-10	1.179e^-6	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	6661294	2R_6661294_DEL [dm3] 2R_10773789_DEL [dm6]	GCAATGTAAT	G	2.101e^-10	1.179e^-6	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	8334648	2R_8334648_SNP [dm3] 2R_12447143_SNP [dm6]	G	A	2.101e^-10	1.179e^-6	INTRON Dyb
X	20929683	X_20929683_SNP [dm3] X_21058656_SNP [dm6]	C	A	2.235e^-10	1.251e^-6	INTRON bves
2L	13294524	2L_13294524_DEL [dm3] 2L_13294524_DEL [dm6]	CCGTGATGTAAGCTC...	C	2.535e^-10	1.414e^-6	INTRON CG31729
3R	13620498	3R_13620498_SNP [dm3] 3R_17794776_SNP [dm6]	A	T	2.652e^-10	1.475e^-6	UPSTREAM CG7713 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8801458	2L_8801458_SNP [dm3] 2L_8801458_SNP [dm6]	A	T	3.088e^-10	1.712e^-6	INTERGENIC
X	12085768	X_12085768_DEL [dm3] X_12191735_DEL [dm6]	TTC	CA	3.289e^-10	1.819e^-6	INTRON Ten-a
2R	7521127	2R_7521127_SNP [dm3] 2R_11633622_SNP [dm6]	C	T	3.332e^-10	1.837e^-6	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1722307	2L_1722307_SNP [dm3] 2L_1722307_SNP [dm6]	A	C	3.582e^-10	1.968e^-6	INTRON Rim2
3R	14287968	3R_14287968_SNP [dm3] 3R_18462246_SNP [dm6]	C	T	3.769e^-10	2.065e^-6	INTRON fru
3L	17355652	3L_17355652_SNP [dm3] 3L_17362552_SNP [dm6]	C	A	3.781e^-10	2.066e^-6	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	2312285	X_2312285_SNP [dm3] X_2418252_SNP [dm6]	C	A	3.807e^-10	2.074e^-6	INTERGENIC
2L	8801747	2L_8801747_SNP [dm3] 2L_8801747_SNP [dm6]	A	T	3.949e^-10	2.145e^-6	INTERGENIC
2L	6366225	2L_6366225_SNP [dm3] 2L_6366225_SNP [dm6]	C	G	4.222e^-10	2.285e^-6	INTERGENIC
2L	8967918	2L_8967918_SNP [dm3] 2L_8967918_SNP [dm6]	G	A	4.244e^-10	2.285e^-6	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
3L	17355606	3L_17355606_SNP [dm3] 3L_17362506_SNP [dm6]	C	A	4.244e^-10	2.285e^-6	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	8842601	3L_8842601_SNP [dm3] 3L_8849501_SNP [dm6]	T	C	6.479e^-10	3.478e^-6	INTRON dally
3L	12734424	3L_12734424_SNP [dm3] 3L_12741324_SNP [dm6]	T	C	6.546e^-10	3.503e^-6	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3R	6269172	3R_6269172_SNP [dm3] 3R_10443450_SNP [dm6]	G	A	6.742e^-10	3.598e^-6	INTERGENIC
2L	16527310	2L_16527310_INS [dm3] 2L_16527310_INS [dm6]	T	TT	7.403e^-10	3.939e^-6	INTRON CG5953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21905488	3R_21905488_SNP [dm3] 3R_26079766_SNP [dm6]	C	T	7.647e^-10	4.057e^-6	INTRON dys
X	13637529	X_13637529_SNP [dm3] X_13743496_SNP [dm6]	C	A	8.147e^-10	4.310e^-6	NON_SYNONYMOUS_CODING Grip91	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	9.699e^-10	5.117e^-6	NON_SYNONYMOUS_CODING CG32984
3R	15903587	3R_15903587_DEL [dm3] 3R_20077865_DEL [dm6]	AGTA	A	1.692e^-9	8.900e^-6	INTERGENIC
3R	25273930	3R_25273930_DEL [dm3] 3R_29448208_DEL [dm6]	CTAC	C	2.201e^-9	1.154e^-5	INTRON Ptp99A
2R	6603087	2R_6603087_SNP [dm3] 2R_10715582_SNP [dm6]	C	T	2.554e^-9	1.336e^-5	SYNONYMOUS_CODING stan
X	1013055	X_1013055_INS [dm3] X_1119022_INS [dm6]	C	CC	2.634e^-9	1.374e^-5	INTRON CG3655
3L	11014417	3L_11014417_SNP [dm3] 3L_11021317_SNP [dm6]	A	T	2.790e^-9	1.451e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	254456	2L_254456_SNP [dm3] 2L_254456_SNP [dm6]	A	G	3.460e^-9	1.794e^-5	INTRON CG3645	TF binding site mE1_TFBS_inv
2L	5080616	2L_5080616_SNP [dm3] 2L_5080616_SNP [dm6]	G	T	3.527e^-9	1.824e^-5	INTRON pgant5
3L	3944695	3L_3944695_SNP [dm3] 3L_3944695_SNP [dm6]	C	G	3.740e^-9	1.864e^-5	INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	5960257	3R_5960257_DEL [dm3] 3R_10134535_DEL [dm6]	TA	T	3.740e^-9	1.864e^-5	UPSTREAM tws INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10575094	2L_10575094_INS [dm3] 2L_10575094_INS [dm6]	A	AG	3.959e^-9	1.864e^-5	DOWNSTREAM w-cup INTRON Trim9
2L	10770255	2L_10770255_SNP [dm3] 2L_10770255_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11735043	2L_11735043_DEL [dm3] 2L_11735043_DEL [dm6]	TGGCA	T	3.959e^-9	1.864e^-5	INTERGENIC
2L	12182367	2L_12182367_SNP [dm3] 2L_12182367_SNP [dm6]	T	C	3.959e^-9	1.864e^-5	INTRON aret
2L	12548608	2L_12548608_SNP [dm3] 2L_12548608_SNP [dm6]	C	G	3.959e^-9	1.864e^-5	INTERGENIC
2L	16345935	2L_16345935_SNP [dm3] 2L_16345935_SNP [dm6]	G	T	3.959e^-9	1.864e^-5	SYNONYMOUS_CODING chif INTRON CG42231	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16412378	2L_16412378_SNP [dm3] 2L_16412378_SNP [dm6]	T	G	3.959e^-9	1.864e^-5	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16412384	2L_16412384_SNP [dm3] 2L_16412384_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16412395	2L_16412395_SNP [dm3] 2L_16412395_SNP [dm6]	T	C	3.959e^-9	1.864e^-5	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5411664	2L_5411664_SNP [dm3] 2L_5411664_SNP [dm6]	G	C	3.959e^-9	1.864e^-5	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5411754	2L_5411754_SNP [dm3] 2L_5411754_SNP [dm6]	C	G	3.959e^-9	1.864e^-5	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5411869	2L_5411869_SNP [dm3] 2L_5411869_SNP [dm6]	G	C	3.959e^-9	1.864e^-5	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8091922	2L_8091922_SNP [dm3] 2L_8091922_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10059303	2R_10059303_SNP [dm3] 2R_14171798_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	UTR_5_PRIME CG8331 INTRON CG8331	TF binding site mE1_TFBS_HSA
2R	11902344	2R_11902344_SNP [dm3] 2R_16014839_SNP [dm6]	T	A	3.959e^-9	1.864e^-5	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11902497	2R_11902497_SNP [dm3] 2R_16014992_SNP [dm6]	A	T	3.959e^-9	1.864e^-5	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11902550	2R_11902550_SNP [dm3] 2R_16015045_SNP [dm6]	C	A	3.959e^-9	1.864e^-5	UPSTREAM Prosbeta1 DOWNSTREAM CG8397 INTRON Rrp42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11902553	2R_11902553_SNP [dm3] 2R_16015048_SNP [dm6]	T	A	3.959e^-9	1.864e^-5	UPSTREAM Prosbeta1 DOWNSTREAM CG8397 INTRON Rrp42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11902779	2R_11902779_SNP [dm3] 2R_16015274_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1 DOWNSTREAM CG8397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	11903821	2R_11903821_SNP [dm3] 2R_16016316_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
2R	11903824	2R_11903824_SNP [dm3] 2R_16016319_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
2R	1328041	2R_1328041_SNP [dm3] 2R_5440536_SNP [dm6]	T	A	3.959e^-9	1.864e^-5	INTRON laccase2
2R	13813465	2R_13813465_SNP [dm3] 2R_17925960_SNP [dm6]	T	A	3.959e^-9	1.864e^-5	UTR_3_PRIME Elk
2R	13813686	2R_13813686_SNP [dm3] 2R_17926181_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	UTR_3_PRIME Elk
2R	15195895	2R_15195895_SNP [dm3] 2R_19308390_SNP [dm6]	G	A	3.959e^-9	1.864e^-5	SYNONYMOUS_CODING EndoB DOWNSTREAM CG7461
3L	10509564	3L_10509564_SNP [dm3] 3L_10516464_SNP [dm6]	C	G	3.959e^-9	1.864e^-5	INTRON A2bp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	11018459	3L_11018459_SNP [dm3] 3L_11025359_SNP [dm6]	T	A	3.959e^-9	1.864e^-5	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
3L	15478430	3L_15478430_SNP [dm3] 3L_15485330_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	NON_SYNONYMOUS_CODING Ran-like
3L	3036437	3L_3036437_SNP [dm3] 3L_3036437_SNP [dm6]	G	A	3.959e^-9	1.864e^-5	INTRON CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7885990	3L_7885990_SNP [dm3] 3L_7892890_SNP [dm6]	T	C	3.959e^-9	1.864e^-5	INTRON CG32365
3R	11716928	3R_11716928_SNP [dm3] 3R_15891206_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	INTRON CG14877
3R	11716937	3R_11716937_SNP [dm3] 3R_15891215_SNP [dm6]	C	T	3.959e^-9	1.864e^-5	INTRON CG14877
X	10198903	X_10198903_SNP [dm3] X_10304870_SNP [dm6]	A	G	3.959e^-9	1.864e^-5	INTRON alpha-Man-I
3R	13644715	3R_13644715_SNP [dm3] 3R_17818993_SNP [dm6]	C	T	3.974e^-9	1.866e^-5	INTRON tinc
2R	11411007	2R_11411007_SNP [dm3] 2R_15523502_SNP [dm6]	G	A	4.072e^-9	1.908e^-5	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10458502	X_10458502_SNP [dm3] X_10564469_SNP [dm6]	T	A	4.994e^-9	2.334e^-5	INTRON spri
2L	8091909	2L_8091909_SNP [dm3] 2L_8091909_SNP [dm6]	C	G	5.863e^-9	2.726e^-5	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16875821	2R_16875821_SNP [dm3] 2R_20988316_SNP [dm6]	A	G	5.863e^-9	2.726e^-5	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6045088	3R_6045088_DEL [dm3] 3R_10219366_DEL [dm6]	GTG	G	6.550e^-9	3.038e^-5	INTRON Syn
2L	19257945	2L_19257945_SNP [dm3] 2L_19257945_SNP [dm6]	C	T	6.802e^-9	3.131e^-5	INTERGENIC
2L	19265476	2L_19265476_SNP [dm3] 2L_19265476_SNP [dm6]	A	T	6.802e^-9	3.131e^-5	INTERGENIC
3L	5652659	3L_5652659_SNP [dm3] 3L_5659559_SNP [dm6]	A	T	6.802e^-9	3.131e^-5	START_GAINED sif UTR_5_PRIME sif DOWNSTREAM Sse
2L	10363986	2L_10363986_SNP [dm3] 2L_10363986_SNP [dm6]	T	G	6.919e^-9	3.177e^-5	UTR_3_PRIME pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11216175	3L_11216175_SNP [dm3] 3L_11223075_SNP [dm6]	C	T	6.976e^-9	3.180e^-5	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11724278	3L_11724278_SNP [dm3] 3L_11731178_SNP [dm6]	A	C	6.976e^-9	3.180e^-5	SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
2L	12943869	2L_12943869_SNP [dm3] 2L_12943869_SNP [dm6]	G	A	7.081e^-9	3.180e^-5	INTERGENIC
2L	5524469	2L_5524469_SNP [dm3] 2L_5524469_SNP [dm6]	G	A	7.081e^-9	3.180e^-5	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8091797	2L_8091797_SNP [dm3] 2L_8091797_SNP [dm6]	C	T	7.081e^-9	3.180e^-5	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11903804	2R_11903804_DEL [dm3] 2R_16016299_DEL [dm6]	GTGCTG	G	7.081e^-9	3.180e^-5	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7674196	2R_7674196_SNP [dm3] 2R_11786691_SNP [dm6]	G	C	7.081e^-9	3.180e^-5	INTRON ths
3L	1368373	3L_1368373_SNP [dm3] 3L_1368373_SNP [dm6]	G	C	7.081e^-9	3.180e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17537778	X_17537778_SNP [dm3] X_17643745_SNP [dm6]	T	C	7.081e^-9	3.180e^-5	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2R	11920505	2R_11920505_SNP [dm3] 2R_16033000_SNP [dm6]	A	T	7.193e^-9	3.191e^-5	INTRON SP2353
3L	11224100	3L_11224100_SNP [dm3] 3L_11231000_SNP [dm6]	A	C	7.193e^-9	3.191e^-5	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	11224914	3L_11224914_SNP [dm3] 3L_11231814_SNP [dm6]	C	T	7.193e^-9	3.191e^-5	UPSTREAM CR45405 INTERGENIC
3R	25188869	3R_25188869_SNP [dm3] 3R_29363147_SNP [dm6]	T	A	7.193e^-9	3.191e^-5	INTERGENIC
X	22250618	X_22250618_SNP [dm3] X_22848782_SNP [dm6]	T	C	7.193e^-9	3.191e^-5	INTRON fog & 1 other
2R	13257566	2R_13257566_SNP [dm3] 2R_17370061_SNP [dm6]	C	G	7.319e^-9	3.239e^-5	INTRON mbl
2L	8819806	2L_8819806_SNP [dm3] 2L_8819806_SNP [dm6]	C	A	7.615e^-9	3.299e^-5	INTERGENIC
2L	8821328	2L_8821328_SNP [dm3] 2L_8821328_SNP [dm6]	T	C	7.615e^-9	3.299e^-5	INTERGENIC
2L	8830303	2L_8830303_SNP [dm3] 2L_8830303_SNP [dm6]	C	G	7.615e^-9	3.299e^-5	DOWNSTREAM SoxN INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12255271	2R_12255271_SNP [dm3] 2R_16367766_SNP [dm6]	C	A	7.615e^-9	3.299e^-5	INTERGENIC
2R	14124226	2R_14124226_SNP [dm3] 2R_18236721_SNP [dm6]	A	T	7.615e^-9	3.299e^-5	DOWNSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14221181	2R_14221181_SNP [dm3] 2R_18333676_SNP [dm6]	C	T	7.615e^-9	3.299e^-5	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11019915	3L_11019915_SNP [dm3] 3L_11026815_SNP [dm6]	A	G	7.615e^-9	3.299e^-5	NON_SYNONYMOUS_CODING CG32079 UPSTREAM CG32081
3R	11716960	3R_11716960_SNP [dm3] 3R_15891238_SNP [dm6]	A	C	7.615e^-9	3.299e^-5	INTRON CG14877
X	6799696	X_6799696_SNP [dm3] X_6905663_SNP [dm6]	G	C	7.615e^-9	3.299e^-5	INTERGENIC
3R	5959556	3R_5959556_SNP [dm3] 3R_10133834_SNP [dm6]	G	A	7.788e^-9	3.366e^-5	INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5531371	2L_5531371_SNP [dm3] 2L_5531371_SNP [dm6]	C	T	8.238e^-9	3.439e^-5	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5531407	2L_5531407_SNP [dm3] 2L_5531407_SNP [dm6]	G	T	8.238e^-9	3.439e^-5	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6867360	2L_6867360_SNP [dm3] 2L_6867360_SNP [dm6]	T	C	8.238e^-9	3.439e^-5	INTRON Nha1
2L	6867458	2L_6867458_SNP [dm3] 2L_6867458_SNP [dm6]	C	T	8.238e^-9	3.439e^-5	INTRON Nha1
2L	9459824	2L_9459824_SNP [dm3] 2L_9459824_SNP [dm6]	A	T	8.238e^-9	3.439e^-5	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9459847	2L_9459847_SNP [dm3] 2L_9459847_SNP [dm6]	C	T	8.238e^-9	3.439e^-5	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19167140	2R_19167140_SNP [dm3] 2R_23279617_SNP [dm6]	C	T	8.238e^-9	3.439e^-5	INTERGENIC
2R	4926759	2R_4926759_SNP [dm3] 2R_9039254_SNP [dm6]	C	A	8.238e^-9	3.439e^-5	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8626081	3L_8626081_SNP [dm3] 3L_8632981_SNP [dm6]	C	A	8.238e^-9	3.439e^-5	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8626093	3L_8626093_SNP [dm3] 3L_8632993_SNP [dm6]	A	T	8.238e^-9	3.439e^-5	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8626339	3L_8626339_SNP [dm3] 3L_8633239_SNP [dm6]	C	T	8.238e^-9	3.439e^-5	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13832763	3R_13832763_SNP [dm3] 3R_18007041_SNP [dm6]	T	A	8.238e^-9	3.439e^-5	INTRON cpo
3R	25775197	3R_25775197_SNP [dm3] 3R_29949475_SNP [dm6]	T	C	8.238e^-9	3.439e^-5	INTERGENIC
3R	26003962	3R_26003962_SNP [dm3] 3R_30178240_SNP [dm6]	C	A	8.238e^-9	3.439e^-5	UPSTREAM CG1983 INTRON CG15530	TF binding site mE1_TFBS_chinmo
X	16733174	X_16733174_SNP [dm3] X_16839141_SNP [dm6]	T	G	8.238e^-9	3.439e^-5	UTR_3_PRIME RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13644836	3R_13644836_SNP [dm3] 3R_17819114_SNP [dm6]	G	A	8.388e^-9	3.494e^-5	INTRON tinc
3R	19073135	3R_19073135_SNP [dm3] 3R_23247413_SNP [dm6]	T	C	9.989e^-9	3.997e^-5	INTRON CG4467
2L	10527896	2L_10527896_SNP [dm3] 2L_10527896_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	INTRON Lip4	TF binding site BDTNP1_TFBS_dl
2L	10642819	2L_10642819_SNP [dm3] 2L_10642819_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	SYNONYMOUS_CODING CG31872
2L	10643830	2L_10643830_SNP [dm3] 2L_10643830_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2L	10643839	2L_10643839_SNP [dm3] 2L_10643839_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2L	10643963	2L_10643963_SNP [dm3] 2L_10643963_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2L	10644273	2L_10644273_SNP [dm3] 2L_10644273_SNP [dm6]	T	A	1.062e^-8	3.997e^-5	DOWNSTREAM CG31872 INTRON CG18284
2L	10644276	2L_10644276_SNP [dm3] 2L_10644276_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	DOWNSTREAM CG31872 INTRON CG18284
2L	10644282	2L_10644282_SNP [dm3] 2L_10644282_SNP [dm6]	A	C	1.062e^-8	3.997e^-5	DOWNSTREAM CG31872 INTRON CG18284
2L	3882507	2L_3882507_DEL [dm3] 2L_3882507_DEL [dm6]	TGCAGCTTCACTTCT...	T	1.062e^-8	3.997e^-5	INTRON capu
2L	9291434	2L_9291434_SNP [dm3] 2L_9291434_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	SYNONYMOUS_CODING Ggamma30A UTR_3_PRIME Ggamma30A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11907158	2R_11907158_DEL [dm3] 2R_16019653_DEL [dm6]	TTCAGCA	T	1.062e^-8	3.997e^-5	INTRON CG8399
2R	11907572	2R_11907572_SNP [dm3] 2R_16020067_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	INTRON CG8399
2R	11907740	2R_11907740_SNP [dm3] 2R_16020235_SNP [dm6]	A	G	1.062e^-8	3.997e^-5	INTRON CG8399
2R	11908438	2R_11908438_SNP [dm3] 2R_16020933_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTRON CG8399
2R	11910181	2R_11910181_SNP [dm3] 2R_16022676_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	NON_SYNONYMOUS_CODING CG8399
2R	12255113	2R_12255113_SNP [dm3] 2R_16367608_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	INTERGENIC
2R	15763181	2R_15763181_SNP [dm3] 2R_19875676_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	INTERGENIC
2R	17246715	2R_17246715_DEL [dm3] 2R_21359210_DEL [dm6]	GCATTAGTG	G	1.062e^-8	3.997e^-5	INTRON cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17246753	2R_17246753_INS [dm3] 2R_21359248_INS [dm6]	C	CC	1.062e^-8	3.997e^-5	INTRON cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2856504	2R_2856504_SNP [dm3] 2R_6968999_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	INTRON mim & 1 other
2R	7445661	2R_7445661_SNP [dm3] 2R_11558156_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	INTERGENIC
2R	9305041	2R_9305041_SNP [dm3] 2R_13417536_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	SPLICE_SITE_REGION CG42321 UTR_3_PRIME CG42321 DOWNSTREAM CG42321 INTRON CG42321
3L	14109330	3L_14109330_SNP [dm3] 3L_14116230_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTRON Sox21b
3L	3031712	3L_3031712_SNP [dm3] 3L_3031712_SNP [dm6]	A	G	1.062e^-8	3.997e^-5	INTERGENIC
3L	3868825	3L_3868825_SNP [dm3] 3L_3868825_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTERGENIC
3L	3943789	3L_3943789_SNP [dm3] 3L_3943789_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	7200692	3L_7200692_SNP [dm3] 3L_7207592_SNP [dm6]	C	A	1.062e^-8	3.997e^-5	INTERGENIC
3L	8898478	3L_8898478_SNP [dm3] 3L_8905378_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
3R	13882630	3R_13882630_SNP [dm3] 3R_18056908_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTERGENIC
X	10089838	X_10089838_SNP [dm3] X_10195805_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	DOWNSTREAM CG43902 INTRON CR44894	TF binding site BDTNP1_TFBS_dl
X	10091895	X_10091895_SNP [dm3] X_10197862_SNP [dm6]	C	A	1.062e^-8	3.997e^-5	INTRON CR44894
X	13205995	X_13205995_SNP [dm3] X_13311962_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTRON IP3K2
X	21897847	X_21897847_SNP [dm3] X_22496011_SNP [dm6]	A	G	1.062e^-8	3.997e^-5	INTRON l_1_G0196
X	22211816	X_22211816_SNP [dm3] X_22809980_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	NON_SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	4233302	X_4233302_SNP [dm3] X_4339269_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	INTRON norpA
X	4234532	X_4234532_INS [dm3] X_4340499_INS [dm6]	T	TT	1.062e^-8	3.997e^-5	INTRON norpA
X	5485647	X_5485647_SNP [dm3] X_5591614_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTERGENIC
X	5485651	X_5485651_SNP [dm3] X_5591618_SNP [dm6]	C	T	1.062e^-8	3.997e^-5	INTERGENIC
X	8014905	X_8014905_SNP [dm3] X_8120872_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	NON_SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	8014954	X_8014954_SNP [dm3] X_8120921_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	8015203	X_8015203_SNP [dm3] X_8121170_SNP [dm6]	T	C	1.062e^-8	3.997e^-5	UPSTREAM CG2260 DOWNSTREAM cyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	8015213	X_8015213_SNP [dm3] X_8121180_SNP [dm6]	G	T	1.062e^-8	3.997e^-5	UPSTREAM CG2260 DOWNSTREAM cyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	9039303	X_9039303_SNP [dm3] X_9145270_SNP [dm6]	T	A	1.062e^-8	3.997e^-5	INTRON CG7065
X	9039685	X_9039685_SNP [dm3] X_9145652_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	INTRON CG7065
X	9039692	X_9039692_SNP [dm3] X_9145659_SNP [dm6]	A	T	1.062e^-8	3.997e^-5	INTRON CG7065
X	9039697	X_9039697_SNP [dm3] X_9145664_SNP [dm6]	G	A	1.062e^-8	3.997e^-5	INTRON CG7065
2L	12502334	2L_12502334_SNP [dm3] 2L_12502334_SNP [dm6]	C	T	1.187e^-8	4.451e^-5	INTRON bun	TF binding site mE1_TFBS_inv
2L	19219572	2L_19219572_SNP [dm3] 2L_19219572_SNP [dm6]	C	T	1.187e^-8	4.451e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	11903052	2R_11903052_DEL [dm3] 2R_16015547_DEL [dm6]	CC	C	1.217e^-8	4.545e^-5	UPSTREAM Prosbeta1 DOWNSTREAM CG8397 INTRON Rrp42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2R	8902877	2R_8902877_SNP [dm3] 2R_13015372_SNP [dm6]	A	C	1.217e^-8	4.545e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8009679	2L_8009679_SNP [dm3] 2L_8009679_SNP [dm6]	T	A	1.244e^-8	4.635e^-5	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	308532	3L_308532_SNP [dm3] 3L_308532_SNP [dm6]	G	T	1.266e^-8	4.635e^-5	NON_SYNONYMOUS_CODING fwd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10423471	3L_10423471_SNP [dm3] 3L_10430371_SNP [dm6]	G	C	1.271e^-8	4.635e^-5	NON_SYNONYMOUS_CODING Ir67b
3L	323160	3L_323160_SNP [dm3] 3L_323160_SNP [dm6]	T	G	1.281e^-8	4.635e^-5	SYNONYMOUS_CODING CG32344
X	11679361	X_11679361_SNP [dm3] X_11785328_SNP [dm6]	G	A	1.281e^-8	4.635e^-5	INTERGENIC
3L	5740283	3L_5740283_SNP [dm3] 3L_5747183_SNP [dm6]	A	G	1.352e^-8	4.635e^-5	UTR_3_PRIME sif DOWNSTREAM sif
2L	8819293	2L_8819293_SNP [dm3] 2L_8819293_SNP [dm6]	A	C	1.361e^-8	4.635e^-5	INTERGENIC
2R	11902469	2R_11902469_SNP [dm3] 2R_16014964_SNP [dm6]	G	T	1.361e^-8	4.635e^-5	UTR_5_PRIME Rrp42 UPSTREAM Prosbeta1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	14498606	3R_14498606_SNP [dm3] 3R_18672884_SNP [dm6]	G	A	1.361e^-8	4.635e^-5	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG31230	TF binding site mE1_TFBS_cad
3R	6849215	3R_6849215_SNP [dm3] 3R_11023493_SNP [dm6]	C	T	1.361e^-8	4.635e^-5	SYNONYMOUS_CODING CG34114
X	9241970	X_9241970_SNP [dm3] X_9347937_SNP [dm6]	T	G	1.361e^-8	4.635e^-5	INTRON CG34449
2R	7509455	2R_7509455_SNP [dm3] 2R_11621950_SNP [dm6]	C	T	1.392e^-8	4.635e^-5	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad
3R	9627709	3R_9627709_SNP [dm3] 3R_13801987_SNP [dm6]	C	T	1.392e^-8	4.635e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10363996	2L_10363996_SNP [dm3] 2L_10363996_SNP [dm6]	A	C	1.408e^-8	4.635e^-5	UTR_3_PRIME pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12905753	2L_12905753_SNP [dm3] 2L_12905753_SNP [dm6]	T	A	1.429e^-8	4.635e^-5	INTERGENIC
2L	12909233	2L_12909233_DEL [dm3] 2L_12909233_DEL [dm6]	GAAAAAG	G	1.429e^-8	4.635e^-5	INTERGENIC
3R	17977968	3R_17977968_SNP [dm3] 3R_22152246_SNP [dm6]	G	A	1.429e^-8	4.635e^-5	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	17872162	3R_17872162_SNP [dm3] 3R_22046440_SNP [dm6]	C	A	1.431e^-8	4.635e^-5	INTRON how
X	17536761	X_17536761_DEL [dm3] X_17642728_DEL [dm6]	AAT	A	1.468e^-8	4.635e^-5	INTRON RhoGAPp190
3L	350383	3L_350383_SNP [dm3] 3L_350383_SNP [dm6]	A	G	1.472e^-8	4.635e^-5	UPSTREAM Ptpmeg INTRON Ptpmeg	TF binding site mE1_TFBS_HSA
3R	17649748	3R_17649748_SNP [dm3] 3R_21824026_SNP [dm6]	T	A	1.472e^-8	4.635e^-5	EXON CR45632	TF binding site BDTNP1_TFBS_dl
3R	17649751	3R_17649751_SNP [dm3] 3R_21824029_SNP [dm6]	T	G	1.472e^-8	4.635e^-5	EXON CR45632	TF binding site BDTNP1_TFBS_dl
2L	16501357	2L_16501357_SNP [dm3] 2L_16501357_SNP [dm6]	G	C	1.475e^-8	4.635e^-5	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_Trl
2L	9704471	2L_9704471_SNP [dm3] 2L_9704471_SNP [dm6]	C	T	1.475e^-8	4.635e^-5	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12636328	2L_12636328_SNP [dm3] 2L_12636328_SNP [dm6]	A	G	1.525e^-8	4.635e^-5	INTRON Ref2
3R	24189442	3R_24189442_SNP [dm3] 3R_28363720_SNP [dm6]	C	A	1.525e^-8	4.635e^-5	INTERGENIC
3L	7200507	3L_7200507_SNP [dm3] 3L_7207407_SNP [dm6]	G	A	1.564e^-8	4.635e^-5	INTERGENIC
2R	4927036	2R_4927036_SNP [dm3] 2R_9039531_SNP [dm6]	A	T	1.574e^-8	4.635e^-5	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	4928399	2R_4928399_SNP [dm3] 2R_9040894_SNP [dm6]	G	A	1.574e^-8	4.635e^-5	SYNONYMOUS_CODING Ance-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26003908	3R_26003908_SNP [dm3] 3R_30178186_SNP [dm6]	T	A	1.574e^-8	4.635e^-5	SYNONYMOUS_CODING CG15530 UPSTREAM CG1983	TF binding site mE1_TFBS_chinmo
X	9464930	X_9464930_SNP [dm3] X_9570897_SNP [dm6]	G	T	1.574e^-8	4.635e^-5	NON_SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
2L	10642876	2L_10642876_SNP [dm3] 2L_10642876_SNP [dm6]	C	A	1.578e^-8	4.635e^-5	SYNONYMOUS_CODING CG31872
3L	20562238	3L_20562238_SNP [dm3] 3L_20569138_SNP [dm6]	G	A	1.578e^-8	4.635e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8758856	X_8758856_SNP [dm3] X_8864823_SNP [dm6]	G	A	1.578e^-8	4.635e^-5	INTRON CG12075
2L	10013526	2L_10013526_SNP [dm3] 2L_10013526_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
2L	10013527	2L_10013527_SNP [dm3] 2L_10013527_SNP [dm6]	G	C	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
2L	10013638	2L_10013638_SNP [dm3] 2L_10013638_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
2L	1218000	2L_1218000_SNP [dm3] 2L_1218000_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	UPSTREAM CR43263 INTERGENIC
2L	12945547	2L_12945547_SNP [dm3] 2L_12945547_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTERGENIC
2L	12945883	2L_12945883_SNP [dm3] 2L_12945883_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTERGENIC
2L	12945885	2L_12945885_DEL [dm3] 2L_12945885_DEL [dm6]	ATTTTCTCCT	A	1.614e^-8	4.635e^-5	INTERGENIC
2L	12947684	2L_12947684_SNP [dm3] 2L_12947684_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTERGENIC
2L	12947727	2L_12947727_SNP [dm3] 2L_12947727_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTERGENIC
2L	12948079	2L_12948079_SNP [dm3] 2L_12948079_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTERGENIC
2L	12948817	2L_12948817_SNP [dm3] 2L_12948817_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTERGENIC
2L	12948890	2L_12948890_SNP [dm3] 2L_12948890_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTERGENIC
2L	12948942	2L_12948942_SNP [dm3] 2L_12948942_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTERGENIC
2L	14937896	2L_14937896_SNP [dm3] 2L_14937896_SNP [dm6]	G	C	1.614e^-8	4.635e^-5	INTRON CG42313
2L	1621983	2L_1621983_DEL [dm3] 2L_1621983_DEL [dm6]	TCGCCGT	T	1.614e^-8	4.635e^-5	EXON CR44603
2L	1622406	2L_1622406_SNP [dm3] 2L_1622406_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	EXON CR44603
2L	1622430	2L_1622430_SNP [dm3] 2L_1622430_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	EXON CR44603
2L	18884140	2L_18884140_SNP [dm3] 2L_18884140_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18886104	2L_18886104_SNP [dm3] 2L_18886104_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20511192	2L_20511192_SNP [dm3] 2L_20511192_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5528093	2L_5528093_SNP [dm3] 2L_5528093_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	UPSTREAM CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	6766548	2L_6766548_SNP [dm3] 2L_6766548_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6766566	2L_6766566_SNP [dm3] 2L_6766566_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8772775	2L_8772775_SNP [dm3] 2L_8772775_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2L	8781736	2L_8781736_SNP [dm3] 2L_8781736_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
2L	8974314	2L_8974314_SNP [dm3] 2L_8974314_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTRON CG9541
2L	9737922	2L_9737922_SNP [dm3] 2L_9737922_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	DOWNSTREAM CG13117 INTRON Nckx30C
2L	9737928	2L_9737928_SNP [dm3] 2L_9737928_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	DOWNSTREAM CG13117 INTRON Nckx30C
2R	11901525	2R_11901525_SNP [dm3] 2R_16014020_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING Prosbeta1 UPSTREAM Rrp42 DOWNSTREAM CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc
2R	11904567	2R_11904567_SNP [dm3] 2R_16017062_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING CG8397 UPSTREAM CG8399
2R	11904766	2R_11904766_SNP [dm3] 2R_16017261_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904773	2R_11904773_SNP [dm3] 2R_16017268_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904778	2R_11904778_SNP [dm3] 2R_16017273_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904782	2R_11904782_MNP [dm3] 2R_16017277_MNP [dm6]	CCT	TAC	1.614e^-8	4.635e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
2R	15800381	2R_15800381_SNP [dm3] 2R_19912876_SNP [dm6]	G	C	1.614e^-8	4.635e^-5	INTERGENIC
2R	18351217	2R_18351217_SNP [dm3] 2R_22463712_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	19667752	2R_19667752_SNP [dm3] 2R_23780229_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTRON CG9850
2R	4481329	2R_4481329_SNP [dm3] 2R_8593824_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	4944896	2R_4944896_SNP [dm3] 2R_9057391_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	INTRON CG13743
2R	4945028	2R_4945028_SNP [dm3] 2R_9057523_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTRON CG13743
2R	6246157	2R_6246157_SNP [dm3] 2R_10358652_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	INTRON CG42732
2R	6254512	2R_6254512_SNP [dm3] 2R_10367007_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	INTRON CG42732
2R	6266501	2R_6266501_SNP [dm3] 2R_10378996_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
2R	7557901	2R_7557901_SNP [dm3] 2R_11670396_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	INTRON Roc2 & 1 other
2R	9706588	2R_9706588_SNP [dm3] 2R_13819083_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	UTR_3_PRIME stj DOWNSTREAM stj & 1 other
3L	12672338	3L_12672338_SNP [dm3] 3L_12679238_SNP [dm6]	A	C	1.614e^-8	4.635e^-5	INTERGENIC
3L	1325172	3L_1325172_SNP [dm3] 3L_1325172_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	UTR_5_PRIME Myo61F UPSTREAM CR45166 INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14138937	3L_14138937_SNP [dm3] 3L_14145837_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14752679	3L_14752679_SNP [dm3] 3L_14759579_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	17878912	3L_17878912_SNP [dm3] 3L_17885812_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC
3L	17893206	3L_17893206_SNP [dm3] 3L_17900106_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	INTRON Prestin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2582234	3L_2582234_SNP [dm3] 3L_2582234_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2582235	3L_2582235_SNP [dm3] 3L_2582235_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3754267	3L_3754267_SNP [dm3] 3L_3754267_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3L	7744111	3L_7744111_SNP [dm3] 3L_7751011_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	DOWNSTREAM CG13685 INTRON CG32373
3L	7744157	3L_7744157_SNP [dm3] 3L_7751057_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	DOWNSTREAM CG13685 INTRON CG32373
3L	7744773	3L_7744773_SNP [dm3] 3L_7751673_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
3L	7745084	3L_7745084_SNP [dm3] 3L_7751984_SNP [dm6]	G	C	1.614e^-8	4.635e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7745088	3L_7745088_SNP [dm3] 3L_7751988_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7745089	3L_7745089_SNP [dm3] 3L_7751989_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7745554	3L_7745554_SNP [dm3] 3L_7752454_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
3L	7946923	3L_7946923_SNP [dm3] 3L_7953823_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTERGENIC
3L	8315685	3L_8315685_SNP [dm3] 3L_8322585_SNP [dm6]	A	C	1.614e^-8	4.635e^-5	DOWNSTREAM CG13670 INTERGENIC
3L	8838806	3L_8838806_SNP [dm3] 3L_8845706_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTRON dally
3L	9496666	3L_9496666_SNP [dm3] 3L_9503566_SNP [dm6]	C	A	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9496692	3L_9496692_SNP [dm3] 3L_9503592_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9497239	3L_9497239_SNP [dm3] 3L_9504139_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9497247	3L_9497247_SNP [dm3] 3L_9504147_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9497248	3L_9497248_SNP [dm3] 3L_9504148_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9497250	3L_9497250_SNP [dm3] 3L_9504150_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9499029	3L_9499029_SNP [dm3] 3L_9505929_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	UPSTREAM path DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11956912	3R_11956912_SNP [dm3] 3R_16131190_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTRON Sb
3R	11957532	3R_11957532_SNP [dm3] 3R_16131810_SNP [dm6]	G	C	1.614e^-8	4.635e^-5	INTRON Sb
3R	14043367	3R_14043367_SNP [dm3] 3R_18217645_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	DOWNSTREAM CG7183 INTRON CG14314	TF binding site mE1_TFBS_cad
3R	15751320	3R_15751320_SNP [dm3] 3R_19925598_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
3R	15772382	3R_15772382_SNP [dm3] 3R_19946660_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTRON Hs6st
3R	15778341	3R_15778341_SNP [dm3] 3R_19952619_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTRON Hs6st
3R	18442173	3R_18442173_SNP [dm3] 3R_22616451_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	UTR_3_PRIME EF-G2 UPSTREAM CG31161
3R	18442181	3R_18442181_SNP [dm3] 3R_22616459_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	UTR_3_PRIME EF-G2 UPSTREAM CG31161
3R	21854830	3R_21854830_SNP [dm3] 3R_26029108_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	UTR_3_PRIME E_spl_m5-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23636288	3R_23636288_SNP [dm3] 3R_27810566_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	23784378	3R_23784378_SNP [dm3] 3R_27958656_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23784486	3R_23784486_SNP [dm3] 3R_27958764_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24167078	3R_24167078_SNP [dm3] 3R_28341356_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTRON Moca-cyp	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	25360187	3R_25360187_SNP [dm3] 3R_29534465_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	UPSTREAM CR43613 INTERGENIC
3R	25360412	3R_25360412_SNP [dm3] 3R_29534690_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	25360414	3R_25360414_SNP [dm3] 3R_29534692_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	25360438	3R_25360438_SNP [dm3] 3R_29534716_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	25360446	3R_25360446_SNP [dm3] 3R_29534724_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	25360475	3R_25360475_SNP [dm3] 3R_29534753_SNP [dm6]	A	C	1.614e^-8	4.635e^-5	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3R	6070975	3R_6070975_SNP [dm3] 3R_10245253_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6848815	3R_6848815_SNP [dm3] 3R_11023093_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	INTRON CG34114
3R	6848932	3R_6848932_SNP [dm3] 3R_11023210_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTRON CG34114
X	10333534	X_10333534_SNP [dm3] X_10439501_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTRON CG32683
X	14552166	X_14552166_DEL [dm3] X_14658133_DEL [dm6]	CGTTTGTATCAAC...	C	1.614e^-8	4.635e^-5	INTERGENIC
X	14552357	X_14552357_SNP [dm3] X_14658324_SNP [dm6]	C	T	1.614e^-8	4.635e^-5	INTERGENIC
X	16308641	X_16308641_SNP [dm3] X_16414608_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
X	19765220	X_19765220_SNP [dm3] X_19871187_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19765644	X_19765644_SNP [dm3] X_19871611_SNP [dm6]	T	G	1.614e^-8	4.635e^-5	INTRON Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19765726	X_19765726_SNP [dm3] X_19871693_SNP [dm6]	G	T	1.614e^-8	4.635e^-5	INTRON Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19765772	X_19765772_INS [dm3] X_19871739_INS [dm6]	T	TCAAT	1.614e^-8	4.635e^-5	INTRON Hers	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2224279	X_2224279_SNP [dm3] X_2330246_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	INTRON phl EXON CR33218
X	2224288	X_2224288_SNP [dm3] X_2330255_SNP [dm6]	C	G	1.614e^-8	4.635e^-5	INTRON phl EXON CR33218
X	9079909	X_9079909_DEL [dm3] X_9185876_DEL [dm6]	AC	A	1.614e^-8	4.635e^-5	UTR_3_PRIME mei-P26
X	9084092	X_9084092_SNP [dm3] X_9190059_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	9084182	X_9084182_SNP [dm3] X_9190149_SNP [dm6]	A	G	1.614e^-8	4.635e^-5	DOWNSTREAM mei-P26 INTRON CG12115
X	9084194	X_9084194_SNP [dm3] X_9190161_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	DOWNSTREAM mei-P26 INTRON CG12115
X	9084280	X_9084280_SNP [dm3] X_9190247_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	DOWNSTREAM mei-P26 INTRON CG12115
X	9084287	X_9084287_SNP [dm3] X_9190254_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	DOWNSTREAM mei-P26 INTRON CG12115
X	9084345	X_9084345_SNP [dm3] X_9190312_SNP [dm6]	T	A	1.614e^-8	4.635e^-5	INTRON CG12115
X	9084476	X_9084476_SNP [dm3] X_9190443_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	INTRON CG12115
X	9084515	X_9084515_SNP [dm3] X_9190482_SNP [dm6]	A	T	1.614e^-8	4.635e^-5	INTRON CG12115
X	9084516	X_9084516_SNP [dm3] X_9190483_SNP [dm6]	G	A	1.614e^-8	4.635e^-5	INTRON CG12115
X	9857338	X_9857338_SNP [dm3] X_9963305_SNP [dm6]	T	C	1.614e^-8	4.635e^-5	DOWNSTREAM CG1791 INTERGENIC
2L	19252207	2L_19252207_SNP [dm3] 2L_19252207_SNP [dm6]	G	T	1.651e^-8	4.733e^-5	INTERGENIC
X	8014717	X_8014717_SNP [dm3] X_8120684_SNP [dm6]	G	C	1.709e^-8	4.894e^-5	SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9039667	X_9039667_SNP [dm3] X_9145634_SNP [dm6]	C	G	1.739e^-8	4.971e^-5	INTRON CG7065
2R	11920993	2R_11920993_SNP [dm3] 2R_16033488_SNP [dm6]	A	G	1.774e^-8	5.029e^-5	INTRON SP2353
3R	19073051	3R_19073051_SNP [dm3] 3R_23247329_SNP [dm6]	A	T	1.774e^-8	5.029e^-5	INTRON CG4467
3R	19073109	3R_19073109_SNP [dm3] 3R_23247387_SNP [dm6]	C	G	1.774e^-8	5.029e^-5	INTRON CG4467
3R	19073144	3R_19073144_SNP [dm3] 3R_23247422_SNP [dm6]	A	G	1.774e^-8	5.029e^-5	INTRON CG4467
2R	12616817	2R_12616817_SNP [dm3] 2R_16729312_SNP [dm6]	C	T	1.786e^-8	5.029e^-5	INTRON CG30463
2R	12616833	2R_12616833_SNP [dm3] 2R_16729328_SNP [dm6]	C	T	1.786e^-8	5.029e^-5	INTRON CG30463
3R	12799048	3R_12799048_SNP [dm3] 3R_16973326_SNP [dm6]	C	T	1.786e^-8	5.029e^-5	INTERGENIC
3R	6448520	3R_6448520_SNP [dm3] 3R_10622798_SNP [dm6]	T	G	1.786e^-8	5.029e^-5	INTRON hth	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19964280	X_19964280_SNP [dm3] X_20070247_SNP [dm6]	C	T	1.786e^-8	5.029e^-5	INTERGENIC
X	2839549	X_2839549_SNP [dm3] X_2945516_SNP [dm6]	T	C	1.786e^-8	5.029e^-5	UTR_5_PRIME CG14423 DOWNSTREAM CG14422 INTRON kirre	TF binding site mE1_TFBS_inv
2L	1378852	2L_1378852_SNP [dm3] 2L_1378852_SNP [dm6]	C	T	1.825e^-8	5.098e^-5	INTERGENIC
2R	2663030	2R_2663030_SNP [dm3] 2R_6775525_SNP [dm6]	T	A	1.825e^-8	5.098e^-5	INTRON Epac
2R	2665868	2R_2665868_SNP [dm3] 2R_6778363_SNP [dm6]	G	A	1.825e^-8	5.098e^-5	INTRON Epac
2R	2677007	2R_2677007_SNP [dm3] 2R_6789502_SNP [dm6]	T	C	1.825e^-8	5.098e^-5	UPSTREAM Epac INTRON Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2683455	2R_2683455_SNP [dm3] 2R_6795950_SNP [dm6]	A	T	1.825e^-8	5.098e^-5	INTRON Epac
2R	16724375	2R_16724375_SNP [dm3] 2R_20836870_SNP [dm6]	C	T	1.827e^-8	5.098e^-5	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	8334893	2R_8334893_SNP [dm3] 2R_12447388_SNP [dm6]	A	G	1.985e^-8	5.520e^-5	INTRON Dyb
2R	8334956	2R_8334956_SNP [dm3] 2R_12447451_SNP [dm6]	A	T	1.985e^-8	5.520e^-5	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	13469968	3L_13469968_SNP [dm3] 3L_13476868_SNP [dm6]	G	T	2.019e^-8	5.606e^-5	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14433114	2R_14433114_SNP [dm3] 2R_18545609_SNP [dm6]	A	G	2.061e^-8	5.714e^-5	SYNONYMOUS_CODING Rgk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10178438	X_10178438_SNP [dm3] X_10284405_SNP [dm6]	T	G	2.127e^-8	5.890e^-5	INTRON alpha-Man-I
2L	3582276	2L_3582276_SNP [dm3] 2L_3582276_SNP [dm6]	G	T	2.162e^-8	5.897e^-5	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10644078	2L_10644078_SNP [dm3] 2L_10644078_SNP [dm6]	A	G	2.172e^-8	5.897e^-5	SYNONYMOUS_CODING CG18284 DOWNSTREAM CG31872
2L	7178214	2L_7178214_SNP [dm3] 2L_7178214_SNP [dm6]	C	G	2.172e^-8	5.897e^-5	UPSTREAM CR44613 INTERGENIC
2R	12304888	2R_12304888_SNP [dm3] 2R_16417383_SNP [dm6]	C	A	2.172e^-8	5.897e^-5	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	12304891	2R_12304891_SNP [dm3] 2R_16417386_SNP [dm6]	A	G	2.172e^-8	5.897e^-5	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	12304893	2R_12304893_SNP [dm3] 2R_16417388_SNP [dm6]	A	T	2.172e^-8	5.897e^-5	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	12304903	2R_12304903_SNP [dm3] 2R_16417398_SNP [dm6]	G	A	2.172e^-8	5.897e^-5	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	12305006	2R_12305006_SNP [dm3] 2R_16417501_SNP [dm6]	C	T	2.172e^-8	5.897e^-5	NON_SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
2R	17433116	2R_17433116_SNP [dm3] 2R_21545611_SNP [dm6]	T	C	2.172e^-8	5.897e^-5	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7431697	2R_7431697_SNP [dm3] 2R_11544192_SNP [dm6]	G	A	2.172e^-8	5.897e^-5	INTERGENIC
2R	7655450	2R_7655450_SNP [dm3] 2R_11767945_SNP [dm6]	A	G	2.172e^-8	5.897e^-5	UPSTREAM CG13193 INTRON ths
3L	6039410	3L_6039410_SNP [dm3] 3L_6046310_SNP [dm6]	G	A	2.172e^-8	5.897e^-5	INTERGENIC
3R	12974352	3R_12974352_SNP [dm3] 3R_17148630_SNP [dm6]	G	T	2.172e^-8	5.897e^-5	INTRON m-cup	TF binding site BDTNP1_TFBS_dl
2R	8902783	2R_8902783_SNP [dm3] 2R_13015278_SNP [dm6]	T	G	2.335e^-8	6.323e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8903466	2R_8903466_SNP [dm3] 2R_13015961_SNP [dm6]	G	A	2.335e^-8	6.323e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12471363	3R_12471363_SNP [dm3] 3R_16645641_SNP [dm6]	T	A	2.434e^-8	6.581e^-5	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2L	15096237	2L_15096237_SNP [dm3] 2L_15096237_SNP [dm6]	C	A	2.461e^-8	6.643e^-5	UTR_3_PRIME CG15270
3R	13644707	3R_13644707_SNP [dm3] 3R_17818985_SNP [dm6]	T	C	2.478e^-8	6.680e^-5	INTRON tinc
3R	10595383	3R_10595383_SNP [dm3] 3R_14769661_SNP [dm6]	T	A	2.515e^-8	6.686e^-5	INTRON jvl
3R	16410589	3R_16410589_SNP [dm3] 3R_20584867_SNP [dm6]	T	A	2.531e^-8	6.686e^-5	INTRON CG16953
3R	25443737	3R_25443737_SNP [dm3] 3R_29618015_SNP [dm6]	G	C	2.591e^-8	6.686e^-5	DOWNSTREAM alph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15022413	2L_15022413_SNP [dm3] 2L_15022413_SNP [dm6]	T	G	2.613e^-8	6.686e^-5	INTRON GABA-B-R1
2L	15143951	2L_15143951_SNP [dm3] 2L_15143951_SNP [dm6]	T	C	2.613e^-8	6.686e^-5	INTERGENIC
2L	3583621	2L_3583621_SNP [dm3] 2L_3583621_SNP [dm6]	A	G	2.613e^-8	6.686e^-5	INTERGENIC
2L	3802881	2L_3802881_SNP [dm3] 2L_3802881_SNP [dm6]	T	A	2.613e^-8	6.686e^-5	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	5532036	2L_5532036_SNP [dm3] 2L_5532036_SNP [dm6]	C	A	2.613e^-8	6.686e^-5	NON_SYNONYMOUS_CODING CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5532229	2L_5532229_SNP [dm3] 2L_5532229_SNP [dm6]	A	T	2.613e^-8	6.686e^-5	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	5532250	2L_5532250_SNP [dm3] 2L_5532250_SNP [dm6]	C	A	2.613e^-8	6.686e^-5	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	5532853	2L_5532853_SNP [dm3] 2L_5532853_SNP [dm6]	T	G	2.613e^-8	6.686e^-5	NON_SYNONYMOUS_CODING Cap-D3 UPSTREAM CG7277	TF binding site mE1_TFBS_cad
2R	11904523	2R_11904523_SNP [dm3] 2R_16017018_SNP [dm6]	G	T	2.613e^-8	6.686e^-5	STOP_GAINED CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42	TF binding site mE1_TFBS_HSA
2R	11904550	2R_11904550_SNP [dm3] 2R_16017045_SNP [dm6]	A	G	2.613e^-8	6.686e^-5	SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42
2R	11904641	2R_11904641_SNP [dm3] 2R_16017136_SNP [dm6]	G	A	2.613e^-8	6.686e^-5	UTR_5_PRIME CG8397 UPSTREAM CG8399
2R	11904720	2R_11904720_SNP [dm3] 2R_16017215_SNP [dm6]	C	G	2.613e^-8	6.686e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
2R	14633079	2R_14633079_SNP [dm3] 2R_18745574_SNP [dm6]	A	G	2.613e^-8	6.686e^-5	START_GAINED Hs3st-A UTR_5_PRIME Hs3st-A UPSTREAM CG17821
2R	15325000	2R_15325000_SNP [dm3] 2R_19437495_SNP [dm6]	A	G	2.613e^-8	6.686e^-5	UTR_5_PRIME Spt5 UPSTREAM Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17939486	2R_17939486_SNP [dm3] 2R_22051981_SNP [dm6]	A	C	2.613e^-8	6.686e^-5	INTERGENIC
2R	6699779	2R_6699779_SNP [dm3] 2R_10812274_SNP [dm6]	T	C	2.613e^-8	6.686e^-5	UTR_3_PRIME CG12341 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6701928	2R_6701928_SNP [dm3] 2R_10814423_SNP [dm6]	C	T	2.613e^-8	6.686e^-5	SYNONYMOUS_CODING CG7222	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9496577	3L_9496577_SNP [dm3] 3L_9503477_SNP [dm6]	G	A	2.613e^-8	6.686e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16998079	3R_16998079_SNP [dm3] 3R_21172357_SNP [dm6]	C	A	2.613e^-8	6.686e^-5	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18368181	3R_18368181_SNP [dm3] 3R_22542459_SNP [dm6]	C	A	2.613e^-8	6.686e^-5	UPSTREAM CR45647 INTERGENIC
3R	20619112	3R_20619112_SNP [dm3] 3R_24793390_SNP [dm6]	G	C	2.613e^-8	6.686e^-5	NON_SYNONYMOUS_CODING Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23637270	3R_23637270_SNP [dm3] 3R_27811548_SNP [dm6]	A	T	2.613e^-8	6.686e^-5	INTRON CG34353
3R	23957810	3R_23957810_SNP [dm3] 3R_28132088_SNP [dm6]	A	C	2.613e^-8	6.686e^-5	INTERGENIC
3R	24166692	3R_24166692_DEL [dm3] 3R_28340970_DEL [dm6]	TTCCAGCCAATTACATCT...	T	2.613e^-8	6.686e^-5	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25360646	3R_25360646_SNP [dm3] 3R_29534924_SNP [dm6]	A	T	2.613e^-8	6.686e^-5	EXON CR43613	TF binding site mE1_TFBS_chinmo
X	9080485	X_9080485_SNP [dm3] X_9186452_SNP [dm6]	A	C	2.613e^-8	6.686e^-5	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
X	9084290	X_9084290_SNP [dm3] X_9190257_SNP [dm6]	C	T	2.613e^-8	6.686e^-5	DOWNSTREAM mei-P26 INTRON CG12115
X	9821577	X_9821577_SNP [dm3] X_9927544_SNP [dm6]	C	A	2.613e^-8	6.686e^-5	DOWNSTREAM Idgf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9857163	X_9857163_SNP [dm3] X_9963130_SNP [dm6]	G	A	2.613e^-8	6.686e^-5	DOWNSTREAM CG1791 INTERGENIC
X	9857362	X_9857362_SNP [dm3] X_9963329_SNP [dm6]	G	A	2.613e^-8	6.686e^-5	DOWNSTREAM CG1791 INTERGENIC
X	9857371	X_9857371_SNP [dm3] X_9963338_SNP [dm6]	G	T	2.613e^-8	6.686e^-5	DOWNSTREAM CG1791 INTERGENIC
2R	4481370	2R_4481370_SNP [dm3] 2R_8593865_SNP [dm6]	A	G	2.680e^-8	6.686e^-5	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	6865119	2R_6865119_SNP [dm3] 2R_10977614_SNP [dm6]	T	G	2.680e^-8	6.686e^-5	DOWNSTREAM luna INTERGENIC
2L	15183745	2L_15183745_SNP [dm3] 2L_15183745_SNP [dm6]	C	T	2.691e^-8	6.686e^-5	INTRON CG4168
2L	15183781	2L_15183781_SNP [dm3] 2L_15183781_SNP [dm6]	A	G	2.691e^-8	6.686e^-5	INTRON CG4168
2L	15183793	2L_15183793_SNP [dm3] 2L_15183793_SNP [dm6]	C	T	2.691e^-8	6.686e^-5	INTRON CG4168
2L	15183830	2L_15183830_SNP [dm3] 2L_15183830_SNP [dm6]	C	G	2.691e^-8	6.686e^-5	INTRON CG4168
2L	11032675	2L_11032675_SNP [dm3] 2L_11032675_SNP [dm6]	C	A	2.702e^-8	6.686e^-5	INTRON Samuel
2R	15196770	2R_15196770_SNP [dm3] 2R_19309265_SNP [dm6]	G	A	2.702e^-8	6.686e^-5	INTRON EndoB
2R	15197886	2R_15197886_DEL [dm3] 2R_19310381_DEL [dm6]	ATTGGT	C	2.702e^-8	6.686e^-5	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
3L	1343338	3L_1343338_SNP [dm3] 3L_1343338_SNP [dm6]	G	A	2.702e^-8	6.686e^-5	UTR_3_PRIME Ptp61F UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5906933	3L_5906933_SNP [dm3] 3L_5913833_SNP [dm6]	G	T	2.702e^-8	6.686e^-5	INTRON CG13288
3L	5906949	3L_5906949_SNP [dm3] 3L_5913849_SNP [dm6]	T	A	2.702e^-8	6.686e^-5	INTRON CG13288
3R	19255213	3R_19255213_SNP [dm3] 3R_23429491_SNP [dm6]	G	T	2.702e^-8	6.686e^-5	INTRON CG4374
3R	22291611	3R_22291611_SNP [dm3] 3R_26465889_SNP [dm6]	A	T	2.702e^-8	6.686e^-5	INTRON CG5455
3R	9536782	3R_9536782_DEL [dm3] 3R_13711060_DEL [dm6]	AC	A	2.702e^-8	6.686e^-5	UPSTREAM primo-1 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536901	3R_9536901_SNP [dm3] 3R_13711179_SNP [dm6]	A	G	2.702e^-8	6.686e^-5	UPSTREAM primo-1 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9648095	3R_9648095_SNP [dm3] 3R_13822373_SNP [dm6]	C	T	2.702e^-8	6.686e^-5	INTERGENIC
X	3157311	X_3157311_SNP [dm3] X_3263278_SNP [dm6]	C	A	2.702e^-8	6.686e^-5	INTRON dnc
X	895024	X_895024_SNP [dm3] X_1000991_SNP [dm6]	C	A	2.702e^-8	6.686e^-5	INTERGENIC
2L	4730160	2L_4730160_SNP [dm3] 2L_4730160_SNP [dm6]	T	C	2.720e^-8	6.686e^-5	INTERGENIC
2R	5551372	2R_5551372_SNP [dm3] 2R_9663867_SNP [dm6]	T	A	2.720e^-8	6.686e^-5	INTRON Mmp2	TF binding site mE1_TFBS_inv
2R	7556269	2R_7556269_SNP [dm3] 2R_11668764_SNP [dm6]	G	A	2.720e^-8	6.686e^-5	INTRON Roc2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8967063	2R_8967063_SNP [dm3] 2R_13079558_SNP [dm6]	A	T	2.720e^-8	6.686e^-5	UPSTREAM Drl-2 INTERGENIC
3L	11016689	3L_11016689_SNP [dm3] 3L_11023589_SNP [dm6]	C	T	2.720e^-8	6.686e^-5	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi
3L	2582494	3L_2582494_SNP [dm3] 3L_2582494_SNP [dm6]	G	T	2.720e^-8	6.686e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3036536	3L_3036536_SNP [dm3] 3L_3036536_SNP [dm6]	C	T	2.720e^-8	6.686e^-5	SYNONYMOUS_CODING CG2162 UTR_5_PRIME CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13459820	3R_13459820_SNP [dm3] 3R_17634098_SNP [dm6]	C	T	2.720e^-8	6.686e^-5	INTRON CG43175
3R	26016419	3R_26016419_SNP [dm3] 3R_30190697_SNP [dm6]	T	C	2.720e^-8	6.686e^-5	SYNONYMOUS_CODING CG9747	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26038842	3R_26038842_SNP [dm3] 3R_30213120_SNP [dm6]	T	C	2.720e^-8	6.686e^-5	DOWNSTREAM CecB & 1 other EXON Cec2
2R	4222744	2R_4222744_SNP [dm3] 2R_8335239_SNP [dm6]	A	T	2.727e^-8	6.686e^-5	INTRON pdm3
2R	4928405	2R_4928405_SNP [dm3] 2R_9040900_SNP [dm6]	A	C	2.727e^-8	6.686e^-5	SYNONYMOUS_CODING Ance-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3254104	3L_3254104_SNP [dm3] 3L_3254104_SNP [dm6]	C	T	2.731e^-8	6.686e^-5	EXON CR43626
3R	11957052	3R_11957052_SNP [dm3] 3R_16131330_SNP [dm6]	G	A	2.731e^-8	6.686e^-5	INTRON Sb
X	4216299	X_4216299_SNP [dm3] X_4322266_SNP [dm6]	C	A	2.731e^-8	6.686e^-5	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	4216616	X_4216616_SNP [dm3] X_4322583_SNP [dm6]	G	C	2.731e^-8	6.686e^-5	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14931294	2L_14931294_SNP [dm3] 2L_14931294_SNP [dm6]	A	G	2.834e^-8	6.892e^-5	DOWNSTREAM CG3491 INTRON CG42313
2L	14944126	2L_14944126_SNP [dm3] 2L_14944126_SNP [dm6]	A	C	2.834e^-8	6.892e^-5	INTRON CG42313
2L	14944134	2L_14944134_SNP [dm3] 2L_14944134_SNP [dm6]	G	A	2.834e^-8	6.892e^-5	INTRON CG42313
2L	14944137	2L_14944137_SNP [dm3] 2L_14944137_SNP [dm6]	T	C	2.834e^-8	6.892e^-5	INTRON CG42313
2R	2629702	2R_2629702_SNP [dm3] 2R_6742197_SNP [dm6]	C	T	2.834e^-8	6.892e^-5	INTRON phtf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6709392	2R_6709392_SNP [dm3] 2R_10821887_SNP [dm6]	G	C	2.996e^-8	7.276e^-5	SYNONYMOUS_CODING RpS15Ab UPSTREAM Lsm10 DOWNSTREAM Prosbeta5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20921103	2R_20921103_SNP [dm3] 2R_25033580_SNP [dm6]	A	C	3.033e^-8	7.295e^-5	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	20950493	2R_20950493_SNP [dm3] 2R_25062970_SNP [dm6]	A	G	3.033e^-8	7.295e^-5	INTRON gsb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13081450	2R_13081450_SNP [dm3] 2R_17193945_SNP [dm6]	C	T	3.129e^-8	7.295e^-5	INTERGENIC
2L	12945884	2L_12945884_SNP [dm3] 2L_12945884_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	INTERGENIC
2L	3501150	2L_3501150_SNP [dm3] 2L_3501150_SNP [dm6]	G	C	3.143e^-8	7.295e^-5	UTR_3_PRIME tim INTRON tim
2L	6256912	2L_6256912_SNP [dm3] 2L_6256912_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	DOWNSTREAM CG9486 INTRON Ddr
2L	8832824	2L_8832824_SNP [dm3] 2L_8832824_SNP [dm6]	C	T	3.143e^-8	7.295e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8973574	2L_8973574_SNP [dm3] 2L_8973574_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	INTRON CG9541
2L	8974024	2L_8974024_SNP [dm3] 2L_8974024_SNP [dm6]	T	C	3.143e^-8	7.295e^-5	INTRON CG9541
2R	12471240	2R_12471240_SNP [dm3] 2R_16583735_SNP [dm6]	C	T	3.143e^-8	7.295e^-5	UPSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15123226	2R_15123226_SNP [dm3] 2R_19235721_SNP [dm6]	A	G	3.143e^-8	7.295e^-5	INTRON cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15123250	2R_15123250_SNP [dm3] 2R_19235745_SNP [dm6]	T	C	3.143e^-8	7.295e^-5	INTRON cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6082061	2R_6082061_SNP [dm3] 2R_10194556_SNP [dm6]	G	T	3.143e^-8	7.295e^-5	INTERGENIC
3L	11030508	3L_11030508_SNP [dm3] 3L_11037408_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	SYNONYMOUS_CODING CG43693
3L	11031783	3L_11031783_SNP [dm3] 3L_11038683_SNP [dm6]	A	C	3.143e^-8	7.295e^-5	INTRON CG43693
3L	1346602	3L_1346602_SNP [dm3] 3L_1346602_SNP [dm6]	C	T	3.143e^-8	7.295e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3L	1347824	3L_1347824_INS [dm3] 3L_1347824_INS [dm6]	A	ATCA	3.143e^-8	7.295e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3L	1347857	3L_1347857_SNP [dm3] 3L_1347857_SNP [dm6]	T	A	3.143e^-8	7.295e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3L	17876503	3L_17876503_SNP [dm3] 3L_17883403_SNP [dm6]	G	T	3.143e^-8	7.295e^-5	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
3L	376334	3L_376334_SNP [dm3] 3L_376334_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	INTRON trh	TF binding site BDTNP1_TFBS_dl
3L	376339	3L_376339_DEL [dm3] 3L_376339_DEL [dm6]	AA	A	3.143e^-8	7.295e^-5	INTRON trh	TF binding site BDTNP1_TFBS_dl
3L	376354	3L_376354_SNP [dm3] 3L_376354_SNP [dm6]	C	A	3.143e^-8	7.295e^-5	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	376355	3L_376355_SNP [dm3] 3L_376355_SNP [dm6]	G	T	3.143e^-8	7.295e^-5	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	376366	3L_376366_DEL [dm3] 3L_376366_DEL [dm6]	TCTTGT	T	3.143e^-8	7.295e^-5	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	6759983	3L_6759983_SNP [dm3] 3L_6766883_SNP [dm6]	G	T	3.143e^-8	7.295e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	7745153	3L_7745153_SNP [dm3] 3L_7752053_SNP [dm6]	C	A	3.143e^-8	7.295e^-5	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11848577	3R_11848577_SNP [dm3] 3R_16022855_SNP [dm6]	G	A	3.143e^-8	7.295e^-5	INTERGENIC	TF binding site mE1_TFBS_sens
3R	13400703	3R_13400703_SNP [dm3] 3R_17574981_SNP [dm6]	C	T	3.143e^-8	7.295e^-5	INTERGENIC
3R	18605016	3R_18605016_SNP [dm3] 3R_22779294_SNP [dm6]	T	C	3.143e^-8	7.295e^-5	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23634562	3R_23634562_SNP [dm3] 3R_27808840_SNP [dm6]	C	A	3.143e^-8	7.295e^-5	INTRON CG34353
3R	26416444	3R_26416444_SNP [dm3] 3R_30590722_SNP [dm6]	A	C	3.143e^-8	7.295e^-5	INTERGENIC
3R	7096892	3R_7096892_SNP [dm3] 3R_11271170_SNP [dm6]	A	T	3.143e^-8	7.295e^-5	EXON CR31386
X	11053334	X_11053334_SNP [dm3] X_11159301_SNP [dm6]	G	A	3.143e^-8	7.295e^-5	INTRON Dlic & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9043680	X_9043680_SNP [dm3] X_9149647_SNP [dm6]	G	A	3.143e^-8	7.295e^-5	SYNONYMOUS_CODING dalao UPSTREAM fh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7526042	2L_7526042_SNP [dm3] 2L_7526042_SNP [dm6]	C	A	3.146e^-8	7.295e^-5	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	7526049	2L_7526049_SNP [dm3] 2L_7526049_SNP [dm6]	G	A	3.146e^-8	7.295e^-5	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11885170	2R_11885170_SNP [dm3] 2R_15997665_SNP [dm6]	G	A	3.156e^-8	7.310e^-5	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10634734	2L_10634734_SNP [dm3] 2L_10634734_SNP [dm6]	T	C	3.232e^-8	7.477e^-5	INTRON CG7329
3R	17848089	3R_17848089_INS [dm3] 3R_22022367_INS [dm6]	C	CCC	3.444e^-8	7.955e^-5	INTRON CG6455	TF binding site BDTNP1_TFBS_dl
2R	9635584	2R_9635584_SNP [dm3] 2R_13748079_SNP [dm6]	T	G	3.641e^-8	8.380e^-5	UTR_3_PRIME fas
3L	11049013	3L_11049013_SNP [dm3] 3L_11055913_SNP [dm6]	A	C	3.641e^-8	8.380e^-5	INTRON CG7888
X	20647398	X_20647398_INS [dm3] X_20776371_INS [dm6]	A	AA	3.641e^-8	8.380e^-5	INTRON shakB
2L	16519166	2L_16519166_SNP [dm3] 2L_16519166_SNP [dm6]	A	G	3.707e^-8	8.520e^-5	INTRON CG5953
2L	8789442	2L_8789442_SNP [dm3] 2L_8789442_SNP [dm6]	C	G	3.785e^-8	8.666e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8794107	2L_8794107_SNP [dm3] 2L_8794107_SNP [dm6]	G	A	3.785e^-8	8.666e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8795437	2L_8795437_SNP [dm3] 2L_8795437_SNP [dm6]	G	A	3.785e^-8	8.666e^-5	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	4927031	2R_4927031_SNP [dm3] 2R_9039526_SNP [dm6]	C	T	4.101e^-8	9.379e^-5	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	5297251	2R_5297251_SNP [dm3] 2R_9409746_SNP [dm6]	G	A	4.200e^-8	9.571e^-5	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9040717	X_9040717_SNP [dm3] X_9146684_SNP [dm6]	T	A	4.200e^-8	9.571e^-5	SYNONYMOUS_CODING CG7065	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9080458	X_9080458_SNP [dm3] X_9186425_SNP [dm6]	G	A	4.200e^-8	9.571e^-5	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
3R	16410656	3R_16410656_SNP [dm3] 3R_20584934_SNP [dm6]	G	T	4.207e^-8	9.575e^-5	INTRON CG16953
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	4.277e^-8	9.721e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12734449	3L_12734449_INS [dm3] 3L_12741349_INS [dm6]	T	TTGTT	4.318e^-8	9.802e^-5	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3L	2657723	3L_2657723_SNP [dm3] 3L_2657723_SNP [dm6]	T	A	4.332e^-8	9.805e^-5	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
X	7961643	X_7961643_SNP [dm3] X_8067610_SNP [dm6]	G	A	4.332e^-8	9.805e^-5	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3254034	3L_3254034_SNP [dm3] 3L_3254034_SNP [dm6]	T	A	4.335e^-8	9.805e^-5	EXON CR43626
2L	1382932	2L_1382932_INS [dm3] 2L_1382932_INS [dm6]	G	GGG	4.371e^-8	9.838e^-5	DOWNSTREAM CR44897 INTRON lea	TF binding site mE1_TFBS_cad
2L	6309400	2L_6309400_SNP [dm3] 2L_6309400_SNP [dm6]	T	C	4.371e^-8	9.838e^-5	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
2R	13842224	2R_13842224_SNP [dm3] 2R_17954719_SNP [dm6]	A	T	4.371e^-8	9.838e^-5	DOWNSTREAM PpY-55A EXON CR44418
3R	23635293	3R_23635293_SNP [dm3] 3R_27809571_SNP [dm6]	G	C	4.371e^-8	9.838e^-5	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	11904736	2R_11904736_SNP [dm3] 2R_16017231_SNP [dm6]	G	C	4.402e^-8	9.885e^-5	UPSTREAM CG8399 & 1 other INTERGENIC
3L	9496791	3L_9496791_SNP [dm3] 3L_9503691_SNP [dm6]	G	A	4.402e^-8	9.885e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9496554	3L_9496554_SNP [dm3] 3L_9503454_SNP [dm6]	A	C	4.425e^-8	9.911e^-5	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4216620	X_4216620_SNP [dm3] X_4322587_SNP [dm6]	T	A	4.425e^-8	9.911e^-5	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6595249	2R_6595249_SNP [dm3] 2R_10707744_SNP [dm6]	A	T	4.451e^-8	9.957e^-5	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3R	5309305	3R_5309305_SNP [dm3] 3R_9483583_SNP [dm6]	A	T	4.485e^-8	1.001e^-4	INTRON CG16779 EXON CR45203
3R	9618070	3R_9618070_SNP [dm3] 3R_13792348_SNP [dm6]	T	C	4.485e^-8	1.001e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9730996	2R_9730996_SNP [dm3] 2R_13843491_SNP [dm6]	T	C	4.517e^-8	1.007e^-4	INTRON Syngr
X	891077	X_891077_SNP [dm3] X_997044_SNP [dm6]	G	T	4.553e^-8	1.014e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5931580	3R_5931580_SNP [dm3] 3R_10105858_SNP [dm6]	C	T	4.579e^-8	1.018e^-4	SYNONYMOUS_CODING Fmr1	TF binding site mE1_TFBS_cad
2L	5532227	2L_5532227_SNP [dm3] 2L_5532227_SNP [dm6]	A	C	4.599e^-8	1.020e^-4	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	5532242	2L_5532242_SNP [dm3] 2L_5532242_SNP [dm6]	A	T	4.599e^-8	1.020e^-4	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	15096770	2L_15096770_SNP [dm3] 2L_15096770_SNP [dm6]	C	T	4.616e^-8	1.023e^-4	UTR_3_PRIME CG15270
3R	9535861	3R_9535861_SNP [dm3] 3R_13710139_SNP [dm6]	C	T	4.633e^-8	1.025e^-4	SYNONYMOUS_CODING primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469	TF binding site mE1_TFBS_cad
2L	1622502	2L_1622502_SNP [dm3] 2L_1622502_SNP [dm6]	A	T	4.646e^-8	1.027e^-4	EXON CR44603
2L	5954517	2L_5954517_SNP [dm3] 2L_5954517_SNP [dm6]	T	A	4.768e^-8	1.049e^-4	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
2L	5954803	2L_5954803_SNP [dm3] 2L_5954803_SNP [dm6]	A	G	4.768e^-8	1.049e^-4	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	5954897	2L_5954897_SNP [dm3] 2L_5954897_SNP [dm6]	A	C	4.768e^-8	1.049e^-4	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2R	4931790	2R_4931790_SNP [dm3] 2R_9044285_SNP [dm6]	C	T	4.768e^-8	1.049e^-4	SYNONYMOUS_CODING PPO2 DOWNSTREAM CG13743	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14931301	2L_14931301_SNP [dm3] 2L_14931301_SNP [dm6]	T	A	4.784e^-8	1.051e^-4	DOWNSTREAM CG3491 INTRON CG42313
2R	12465779	2R_12465779_SNP [dm3] 2R_16578274_SNP [dm6]	C	A	4.894e^-8	1.074e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	25861327	3R_25861327_SNP [dm3] 3R_30035605_SNP [dm6]	G	A	4.958e^-8	1.087e^-4	SYNONYMOUS_CODING CG7928 UPSTREAM CR44045 DOWNSTREAM Axn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1323857	3L_1323857_SNP [dm3] 3L_1323857_SNP [dm6]	A	G	5.091e^-8	1.108e^-4	UPSTREAM Myo61F INTRON Myo61F & 1 other
3L	1326867	3L_1326867_SNP [dm3] 3L_1326867_SNP [dm6]	T	A	5.091e^-8	1.108e^-4	INTRON Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1326900	3L_1326900_SNP [dm3] 3L_1326900_SNP [dm6]	C	T	5.091e^-8	1.108e^-4	SPLICE_SITE_REGION Myo61F SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1338801	3L_1338801_SNP [dm3] 3L_1338801_SNP [dm6]	C	T	5.091e^-8	1.108e^-4	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
3L	3460430	3L_3460430_SNP [dm3] 3L_3460430_SNP [dm6]	C	G	5.091e^-8	1.108e^-4	UTR_5_PRIME eIF5B UPSTREAM armi	TF binding site BDTNP1_TFBS_dl
3R	14146300	3R_14146300_SNP [dm3] 3R_18320578_SNP [dm6]	C	T	5.091e^-8	1.108e^-4	INTRON CG31235
2L	9347647	2L_9347647_SNP [dm3] 2L_9347647_SNP [dm6]	C	A	5.198e^-8	1.129e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	12945896	2L_12945896_SNP [dm3] 2L_12945896_SNP [dm6]	G	T	5.205e^-8	1.129e^-4	INTERGENIC
2L	15183771	2L_15183771_SNP [dm3] 2L_15183771_SNP [dm6]	T	A	5.248e^-8	1.129e^-4	INTRON CG4168
2L	15183780	2L_15183780_SNP [dm3] 2L_15183780_SNP [dm6]	A	T	5.248e^-8	1.129e^-4	INTRON CG4168
3R	13058848	3R_13058848_SNP [dm3] 3R_17233126_SNP [dm6]	T	G	5.248e^-8	1.129e^-4	INTRON beat-IIb
2L	8814496	2L_8814496_SNP [dm3] 2L_8814496_SNP [dm6]	A	G	5.248e^-8	1.129e^-4	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8814513	2L_8814513_SNP [dm3] 2L_8814513_SNP [dm6]	A	T	5.248e^-8	1.129e^-4	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12306329	2R_12306329_SNP [dm3] 2R_16418824_SNP [dm6]	A	G	5.248e^-8	1.129e^-4	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 INTRON Sema-2b
3L	1341615	3L_1341615_SNP [dm3] 3L_1341615_SNP [dm6]	A	T	5.248e^-8	1.129e^-4	NON_SYNONYMOUS_CODING CG2199 DOWNSTREAM Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	3157264	X_3157264_SNP [dm3] X_3263231_SNP [dm6]	C	T	5.248e^-8	1.129e^-4	INTRON dnc
2L	14595511	2L_14595511_SNP [dm3] 2L_14595511_SNP [dm6]	A	G	5.286e^-8	1.130e^-4	INTERGENIC
2L	20872555	2L_20872555_DEL [dm3] 2L_20872555_DEL [dm6]	ACA	A	5.286e^-8	1.130e^-4	UTR_3_PRIME sky & 1 other DOWNSTREAM CG14401 & 1 other
2R	11423184	2R_11423184_SNP [dm3] 2R_15535679_SNP [dm6]	T	G	5.286e^-8	1.130e^-4	SYNONYMOUS_CODING CG30471	TF binding site BDTNP1_TFBS_sna
3R	13459589	3R_13459589_SNP [dm3] 3R_17633867_SNP [dm6]	T	C	5.286e^-8	1.130e^-4	INTRON CG43175
X	9079560	X_9079560_SNP [dm3] X_9185527_SNP [dm6]	A	C	5.286e^-8	1.130e^-4	UTR_3_PRIME mei-P26
2L	7178152	2L_7178152_SNP [dm3] 2L_7178152_SNP [dm6]	C	T	5.484e^-8	1.171e^-4	EXON CR44613
2L	8832955	2L_8832955_SNP [dm3] 2L_8832955_SNP [dm6]	A	G	5.636e^-8	1.201e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1347798	3L_1347798_SNP [dm3] 3L_1347798_SNP [dm6]	C	A	5.636e^-8	1.201e^-4	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
2L	8791210	2L_8791210_SNP [dm3] 2L_8791210_SNP [dm6]	G	A	5.660e^-8	1.205e^-4	INTERGENIC
2R	7447933	2R_7447933_SNP [dm3] 2R_11560428_SNP [dm6]	C	A	5.989e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23551157	3R_23551157_SNP [dm3] 3R_27725435_SNP [dm6]	G	A	5.995e^-8	1.208e^-4	INTERGENIC
2R	12306296	2R_12306296_SNP [dm3] 2R_16418791_SNP [dm6]	T	C	6.037e^-8	1.208e^-4	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 INTRON Sema-2b
2R	12306398	2R_12306398_SNP [dm3] 2R_16418893_SNP [dm6]	C	G	6.037e^-8	1.208e^-4	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 INTRON Sema-2b
2R	9676997	2R_9676997_SNP [dm3] 2R_13789492_SNP [dm6]	G	A	6.201e^-8	1.208e^-4	INTERGENIC
2R	9690460	2R_9690460_SNP [dm3] 2R_13802955_SNP [dm6]	A	T	6.201e^-8	1.208e^-4	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
3R	25454947	3R_25454947_SNP [dm3] 3R_29629225_SNP [dm6]	T	C	6.201e^-8	1.208e^-4	INTERGENIC
X	9042045	X_9042045_DEL [dm3] X_9148012_DEL [dm6]	AT	A	6.201e^-8	1.208e^-4	DOWNSTREAM fh & 1 other INTERGENIC
3L	11597288	3L_11597288_SNP [dm3] 3L_11604188_SNP [dm6]	C	A	6.313e^-8	1.208e^-4	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8798058	2L_8798058_SNP [dm3] 2L_8798058_SNP [dm6]	C	T	6.353e^-8	1.208e^-4	INTERGENIC
2R	8585741	2R_8585741_SNP [dm3] 2R_12698236_SNP [dm6]	G	T	6.353e^-8	1.208e^-4	INTERGENIC
2L	8795735	2L_8795735_DEL [dm3] 2L_8795735_DEL [dm6]	GG	G	6.521e^-8	1.208e^-4	INTERGENIC
2L	19002391	2L_19002391_INS [dm3] 2L_19002391_INS [dm6]	T	TT	6.584e^-8	1.208e^-4	UPSTREAM CG31793 INTRON CG31792	TF binding site mE1_TFBS_cad
3R	23203435	3R_23203435_SNP [dm3] 3R_27377713_SNP [dm6]	G	A	6.604e^-8	1.208e^-4	UTR_3_PRIME side INTRON side
2L	10013516	2L_10013516_SNP [dm3] 2L_10013516_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
2L	10648936	2L_10648936_SNP [dm3] 2L_10648936_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG17097
2L	12376815	2L_12376815_SNP [dm3] 2L_12376815_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	INTRON bru-2
2L	1311841	2L_1311841_SNP [dm3] 2L_1311841_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	13344372	2L_13344372_SNP [dm3] 2L_13344372_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTERGENIC
2L	19701186	2L_19701186_SNP [dm3] 2L_19701186_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19741321	2L_19741321_SNP [dm3] 2L_19741321_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	EXON CR44906	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3495758	2L_3495758_SNP [dm3] 2L_3495758_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING tim UTR_3_PRIME tim
2L	3500573	2L_3500573_SNP [dm3] 2L_3500573_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	SPLICE_SITE_REGION tim SYNONYMOUS_CODING tim DOWNSTREAM tim
2L	3509817	2L_3509817_SNP [dm3] 2L_3509817_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
2L	4383677	2L_4383677_SNP [dm3] 2L_4383677_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG3338 UPSTREAM CG17612	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5489368	2L_5489368_SNP [dm3] 2L_5489368_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8591631	2L_8591631_SNP [dm3] 2L_8591631_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	UPSTREAM CR43855 INTRON Sema-1a & 1 other
2L	9354648	2L_9354648_SNP [dm3] 2L_9354648_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC
2L	9396718	2L_9396718_SNP [dm3] 2L_9396718_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	DOWNSTREAM CG4438 INTRON Shawl	insulator Insulator_Class_II.mE01
2L	9396730	2L_9396730_SNP [dm3] 2L_9396730_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	DOWNSTREAM CG4438 INTRON Shawl
2R	11579898	2R_11579898_SNP [dm3] 2R_15692393_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	UPSTREAM CG30087 DOWNSTREAM CG30088 EXON CR44372
2R	11890236	2R_11890236_SNP [dm3] 2R_16002731_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11890640	2R_11890640_SNP [dm3] 2R_16003135_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13277522	2R_13277522_SNP [dm3] 2R_17390017_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	UPSTREAM CR44344 INTERGENIC
2R	13628251	2R_13628251_SNP [dm3] 2R_17740746_SNP [dm6]	T	G	6.712e^-8	1.208e^-4	INTRON CG4996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	13628279	2R_13628279_SNP [dm3] 2R_17740774_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTRON CG4996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14488983	2R_14488983_SNP [dm3] 2R_18601478_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	INTRON GEFmeso
2R	14489064	2R_14489064_SNP [dm3] 2R_18601559_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON GEFmeso
2R	14618611	2R_14618611_SNP [dm3] 2R_18731106_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	UPSTREAM List INTRON Hs3st-A
2R	14618612	2R_14618612_SNP [dm3] 2R_18731107_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	UPSTREAM List INTRON Hs3st-A
2R	16570297	2R_16570297_SNP [dm3] 2R_20682792_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTERGENIC
2R	1735455	2R_1735455_SNP [dm3] 2R_5847950_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON dpr12	TF binding site mE1_TFBS_chinmo
2R	17570819	2R_17570819_SNP [dm3] 2R_21683314_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON CG30263	TF binding site mE1_TFBS_cad
2R	17571510	2R_17571510_SNP [dm3] 2R_21684005_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17571518	2R_17571518_SNP [dm3] 2R_21684013_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18890069	2R_18890069_SNP [dm3] 2R_23002546_SNP [dm6]	G	C	6.712e^-8	1.208e^-4	INTRON twi	TF binding site mE1_TFBS_bab1
2R	18890086	2R_18890086_SNP [dm3] 2R_23002563_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON twi	TF binding site mE1_TFBS_bab1
2R	18890087	2R_18890087_SNP [dm3] 2R_23002564_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON twi	TF binding site mE1_TFBS_bab1
2R	18890113	2R_18890113_SNP [dm3] 2R_23002590_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	INTRON twi	TF binding site mE1_TFBS_bab1
2R	19360791	2R_19360791_SNP [dm3] 2R_23473268_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING Or59c INTRON CG43795
2R	5544265	2R_5544265_SNP [dm3] 2R_9656760_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON Mmp2
2R	6182603	2R_6182603_SNP [dm3] 2R_10295098_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTRON CAP
2R	7414591	2R_7414591_SNP [dm3] 2R_11527086_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7416856	2R_7416856_SNP [dm3] 2R_11529351_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7417242	2R_7417242_SNP [dm3] 2R_11529737_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7417650	2R_7417650_SNP [dm3] 2R_11530145_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7418262	2R_7418262_SNP [dm3] 2R_11530757_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7617227	2R_7617227_SNP [dm3] 2R_11729722_SNP [dm6]	T	G	6.712e^-8	1.208e^-4	INTERGENIC
2R	9636229	2R_9636229_SNP [dm3] 2R_13748724_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	UTR_3_PRIME fas
3L	10822499	3L_10822499_SNP [dm3] 3L_10829399_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC
3L	10923090	3L_10923090_SNP [dm3] 3L_10929990_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTERGENIC
3L	10923097	3L_10923097_SNP [dm3] 3L_10929997_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC
3L	10923702	3L_10923702_SNP [dm3] 3L_10930602_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTERGENIC
3L	10924650	3L_10924650_SNP [dm3] 3L_10931550_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTERGENIC
3L	11004082	3L_11004082_DEL [dm3] 3L_11010982_DEL [dm6]	AG	A	6.712e^-8	1.208e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11005209	3L_11005209_SNP [dm3] 3L_11012109_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11013109	3L_11013109_SNP [dm3] 3L_11020009_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11013370	3L_11013370_SNP [dm3] 3L_11020270_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11617621	3L_11617621_SNP [dm3] 3L_11624521_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	UPSTREAM CG6084 DOWNSTREAM CG6083 INTERGENIC
3L	11651713	3L_11651713_INS [dm3] 3L_11658613_INS [dm6]	T	TA	6.712e^-8	1.208e^-4	INTRON CG32085
3L	12772392	3L_12772392_SNP [dm3] 3L_12779292_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_sens
3L	12772418	3L_12772418_SNP [dm3] 3L_12779318_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_sens
3L	13390598	3L_13390598_SNP [dm3] 3L_13397498_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTRON sens
3L	13390727	3L_13390727_SNP [dm3] 3L_13397627_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON sens
3L	14131939	3L_14131939_SNP [dm3] 3L_14138839_SNP [dm6]	A	C	6.712e^-8	1.208e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3L	14136077	3L_14136077_SNP [dm3] 3L_14142977_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	INTERGENIC	regulatory region REDfly_CRMs
3L	1450511	3L_1450511_SNP [dm3] 3L_1450511_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTRON Ptp61F
3L	17694757	3L_17694757_SNP [dm3] 3L_17701657_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	INTRON Ccn
3L	17694776	3L_17694776_SNP [dm3] 3L_17701676_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	INTRON Ccn
3L	17694781	3L_17694781_INS [dm3] 3L_17701681_INS [dm6]	A	AAA	6.712e^-8	1.208e^-4	INTRON Ccn
3L	17694790	3L_17694790_SNP [dm3] 3L_17701690_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON Ccn
3L	277065	3L_277065_SNP [dm3] 3L_277065_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	277188	3L_277188_SNP [dm3] 3L_277188_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	285032	3L_285032_SNP [dm3] 3L_285032_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON RhoGEF3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2901037	3L_2901037_SNP [dm3] 3L_2901037_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	INTRON Shab
3L	2901039	3L_2901039_SNP [dm3] 3L_2901039_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTRON Shab
3L	3455871	3L_3455871_SNP [dm3] 3L_3455871_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
3L	3457368	3L_3457368_SNP [dm3] 3L_3457368_SNP [dm6]	A	C	6.712e^-8	1.208e^-4	INTRON eIF5B	TF binding site mE1_TFBS_cad
3L	3457369	3L_3457369_SNP [dm3] 3L_3457369_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	INTRON eIF5B	TF binding site mE1_TFBS_cad
3L	3465897	3L_3465897_SNP [dm3] 3L_3465897_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	UPSTREAM CycJ INTRON armi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3465914	3L_3465914_SNP [dm3] 3L_3465914_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING armi UPSTREAM CycJ	TF binding site mE1_TFBS_sens
3L	362205	3L_362205_SNP [dm3] 3L_362205_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG1233 UTR_5_PRIME CG1233 UPSTREAM Cdc5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	362392	3L_362392_SNP [dm3] 3L_362392_SNP [dm6]	A	C	6.712e^-8	1.208e^-4	INTRON CG1233	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	366457	3L_366457_SNP [dm3] 3L_366457_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	UPSTREAM CG13884 DOWNSTREAM trh & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	366529	3L_366529_SNP [dm3] 3L_366529_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	UTR_3_PRIME trh UPSTREAM CG13884 DOWNSTREAM CG1233	TF binding site mE1_TFBS_cad
3L	380706	3L_380706_SNP [dm3] 3L_380706_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3944430	3L_3944430_SNP [dm3] 3L_3944430_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	4020825	3L_4020825_SNP [dm3] 3L_4020825_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING fd64A UPSTREAM Mul1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4830629	3L_4830629_SNP [dm3] 3L_4830629_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5151353	3L_5151353_SNP [dm3] 3L_5158253_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	UTR_3_PRIME shep DOWNSTREAM shep	TF binding site mE1_TFBS_HSA
3L	6036504	3L_6036504_SNP [dm3] 3L_6043404_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTERGENIC
3L	6041596	3L_6041596_SNP [dm3] 3L_6048496_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC
3L	6052770	3L_6052770_SNP [dm3] 3L_6059670_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
3L	8632190	3L_8632190_SNP [dm3] 3L_8639090_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8632660	3L_8632660_SNP [dm3] 3L_8639560_SNP [dm6]	G	C	6.712e^-8	1.208e^-4	UPSTREAM Cpr66D DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	9114406	3L_9114406_SNP [dm3] 3L_9121306_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON bol
3L	9132157	3L_9132157_SNP [dm3] 3L_9139057_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	INTRON nwk
3L	9132188	3L_9132188_SNP [dm3] 3L_9139088_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_sens
3L	9515251	3L_9515251_SNP [dm3] 3L_9522151_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON CG33700
3L	9855682	3L_9855682_SNP [dm3] 3L_9862582_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
3R	10309297	3R_10309297_SNP [dm3] 3R_14483575_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	13400355	3R_13400355_SNP [dm3] 3R_17574633_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC
3R	13400413	3R_13400413_DEL [dm3] 3R_17574691_DEL [dm6]	ATTTT	A	6.712e^-8	1.208e^-4	INTERGENIC
3R	13400462	3R_13400462_SNP [dm3] 3R_17574740_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC
3R	13400465	3R_13400465_SNP [dm3] 3R_17574743_SNP [dm6]	A	C	6.712e^-8	1.208e^-4	INTERGENIC
3R	13400494	3R_13400494_SNP [dm3] 3R_17574772_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTERGENIC
3R	14327737	3R_14327737_SNP [dm3] 3R_18502015_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	INTRON fru
3R	15765327	3R_15765327_SNP [dm3] 3R_19939605_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	INTRON Hs6st
3R	15765380	3R_15765380_SNP [dm3] 3R_19939658_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTRON Hs6st
3R	19184632	3R_19184632_SNP [dm3] 3R_23358910_SNP [dm6]	A	C	6.712e^-8	1.208e^-4	DOWNSTREAM Sec13 INTRON RpS3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	19265151	3R_19265151_SNP [dm3] 3R_23439429_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19265169	3R_19265169_SNP [dm3] 3R_23439447_SNP [dm6]	T	A	6.712e^-8	1.208e^-4	INTRON CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19265181	3R_19265181_SNP [dm3] 3R_23439459_SNP [dm6]	T	C	6.712e^-8	1.208e^-4	INTRON CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19707702	3R_19707702_SNP [dm3] 3R_23881980_SNP [dm6]	G	T	6.712e^-8	1.208e^-4	INTRON Pli
3R	20232487	3R_20232487_SNP [dm3] 3R_24406765_SNP [dm6]	C	A	6.712e^-8	1.208e^-4	INTRON nAChRalpha1
3R	20763048	3R_20763048_SNP [dm3] 3R_24937326_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING Osbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22313322	3R_22313322_INS [dm3] 3R_26487600_INS [dm6]	AC	TTA	6.712e^-8	1.208e^-4	INTRON plum	TF binding site mE1_TFBS_inv
3R	24253005	3R_24253005_SNP [dm3] 3R_28427283_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON beat-VI
3R	24810703	3R_24810703_SNP [dm3] 3R_28984981_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTERGENIC
3R	25274793	3R_25274793_SNP [dm3] 3R_29449071_SNP [dm6]	G	A	6.712e^-8	1.208e^-4	INTRON Ptp99A
3R	25274795	3R_25274795_SNP [dm3] 3R_29449073_SNP [dm6]	A	T	6.712e^-8	1.208e^-4	INTRON Ptp99A
3R	25276565	3R_25276565_SNP [dm3] 3R_29450843_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	INTRON Ptp99A
3R	25276665	3R_25276665_SNP [dm3] 3R_29450943_SNP [dm6]	A	G	6.712e^-8	1.208e^-4	INTRON Ptp99A
3R	25277545	3R_25277545_SNP [dm3] 3R_29451823_SNP [dm6]	C	G	6.712e^-8	1.208e^-4	INTRON Ptp99A
3R	26011785	3R_26011785_SNP [dm3] 3R_30186063_SNP [dm6]	C	T	6.712e^-8	1.208e^-4	SYNONYMOUS_CODING CG9747	TF binding site mE1_TFBS_inv

By genomic position
Variant impact
Gene name

pc_MB_Beta_Short phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results