DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.341e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13588913	2R_13588913_SNP [dm3] 2R_17701408_SNP [dm6]	A	T	2.746e^-11	4.458e^-5	UPSTREAM snoRNA:Me28S-G3277a & 3 others DOWNSTREAM snoRNA:U29:54Ec & 3 others EXON Uhg1
2R	12478738	2R_12478738_SNP [dm3] 2R_16591233_SNP [dm6]	C	T	4.833e^-11	4.458e^-5	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2R	8904062	2R_8904062_SNP [dm3] 2R_13016557_SNP [dm6]	A	C	2.330e^-10	1.433e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11636218	2R_11636218_SNP [dm3] 2R_15748713_SNP [dm6]	C	G	3.621e^-10	1.670e^-4	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6555950	2R_6555950_SNP [dm3] 2R_10668445_SNP [dm6]	A	G	5.007e^-10	1.848e^-4	INTERGENIC
3R	9630054	3R_9630054_SNP [dm3] 3R_13804332_SNP [dm6]	G	T	6.796e^-10	2.090e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9517247	2L_9517247_SNP [dm3] 2L_9517247_SNP [dm6]	T	G	8.151e^-10	2.148e^-4	SYNONYMOUS_CODING CG33298
3R	26076930	3R_26076930_SNP [dm3] 3R_30251208_SNP [dm6]	G	T	9.748e^-10	2.248e^-4	DOWNSTREAM CG34299 INTRON CG9682
2L	12708664	2L_12708664_DEL [dm3] 2L_12708664_DEL [dm6]	ATTGTTAAAGACATATTAAC...	A	1.599e^-9	3.253e^-4	UTR_3_PRIME CG6180 UPSTREAM CG15484 DOWNSTREAM CG5787 & 1 other INTRAGENIC CG6180 INTERGENIC
3R	19815983	3R_19815983_SNP [dm3] 3R_23990261_SNP [dm6]	T	C	1.763e^-9	3.253e^-4	SYNONYMOUS_CODING CG13604
2L	12708133	2L_12708133_SNP [dm3] 2L_12708133_SNP [dm6]	T	C	3.305e^-9	5.543e^-4	SYNONYMOUS_CODING CG6180 UPSTREAM CG15484 DOWNSTREAM CG5787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	9623873	3R_9623873_SNP [dm3] 3R_13798151_SNP [dm6]	T	G	6.667e^-9	0.001	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26174742	3R_26174742_SNP [dm3] 3R_30349020_SNP [dm6]	G	A	8.450e^-9	0.001	INTRON hdc
X	8914082	X_8914082_SNP [dm3] X_9020049_SNP [dm6]	T	C	8.766e^-9	0.001	INTRON CR43836 & 1 other
2R	13589085	2R_13589085_SNP [dm3] 2R_17701580_SNP [dm6]	G	A	1.071e^-8	0.001	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others INTRON Uhg1
3R	17768831	3R_17768831_SNP [dm3] 3R_21943109_SNP [dm6]	A	T	1.316e^-8	0.001	INTERGENIC
3R	17768905	3R_17768905_SNP [dm3] 3R_21943183_SNP [dm6]	G	C	1.316e^-8	0.001	INTERGENIC
3R	25336829	3R_25336829_INS [dm3] 3R_29511107_INS [dm6]	T	TGT	1.316e^-8	0.001	INTERGENIC
3R	24644556	3R_24644556_SNP [dm3] 3R_28818834_SNP [dm6]	G	A	1.480e^-8	0.001	SYNONYMOUS_CODING CG1523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26550034	3R_26550034_SNP [dm3] 3R_30724312_SNP [dm6]	C	A	1.554e^-8	0.001	INTERGENIC
3R	13771597	3R_13771597_SNP [dm3] 3R_17945875_SNP [dm6]	G	T	2.274e^-8	0.002	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25025473	3R_25025473_SNP [dm3] 3R_29199751_SNP [dm6]	C	T	2.480e^-8	0.002	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23398814	3R_23398814_INS [dm3] 3R_27573092_INS [dm6]	C	CAGC	2.688e^-8	0.002	INTRON wdb
2L	8139231	2L_8139231_SNP [dm3] 2L_8139231_SNP [dm6]	G	C	2.893e^-8	0.002	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	4954981	3R_4954981_SNP [dm3] 3R_9129259_SNP [dm6]	G	A	3.061e^-8	0.002	INTRON pum	TF binding site mE1_TFBS_Trl
X	21315818	X_21315818_SNP [dm3] X_21444791_SNP [dm6]	C	T	3.469e^-8	0.002	INTRON CG42343
3R	9624884	3R_9624884_SNP [dm3] 3R_13799162_SNP [dm6]	A	G	3.823e^-8	0.003	UPSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13771513	3R_13771513_SNP [dm3] 3R_17945791_SNP [dm6]	G	A	4.103e^-8	0.003	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6555947	2R_6555947_SNP [dm3] 2R_10668442_SNP [dm6]	A	T	4.267e^-8	0.003	INTERGENIC
2R	18155898	2R_18155898_SNP [dm3] 2R_22268393_SNP [dm6]	A	G	4.999e^-8	0.003	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18882253	3L_18882253_SNP [dm3] 3L_18889153_SNP [dm6]	A	C	5.550e^-8	0.003	INTRON CG3961
3R	13961647	3R_13961647_SNP [dm3] 3R_18135925_SNP [dm6]	G	A	5.954e^-8	0.003	DOWNSTREAM sr INTERGENIC
3R	25338353	3R_25338353_SNP [dm3] 3R_29512631_SNP [dm6]	C	A	7.114e^-8	0.004	INTERGENIC
3L	938650	3L_938650_SNP [dm3] 3L_938650_SNP [dm6]	T	A	7.547e^-8	0.004	INTRON Glut1
3R	25191950	3R_25191950_SNP [dm3] 3R_29366228_SNP [dm6]	G	A	7.547e^-8	0.004	INTERGENIC
2R	17734815	2R_17734815_SNP [dm3] 2R_21847310_SNP [dm6]	C	G	8.226e^-8	0.004	INTERGENIC
2L	3940784	2L_3940784_SNP [dm3] 2L_3940784_SNP [dm6]	A	G	9.800e^-8	0.005	INTRON fred
2L	3940816	2L_3940816_SNP [dm3] 2L_3940816_SNP [dm6]	C	A	9.800e^-8	0.005	INTRON fred
X	2152633	X_2152633_SNP [dm3] X_2258600_SNP [dm6]	G	T	1.177e^-7	0.005	UTR_5_PRIME CG3078	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8334362	2L_8334362_SNP [dm3] 2L_8334362_SNP [dm6]	C	T	1.184e^-7	0.005	INTERGENIC
3R	25338315	3R_25338315_SNP [dm3] 3R_29512593_SNP [dm6]	G	T	1.191e^-7	0.005	INTERGENIC
2R	8904295	2R_8904295_SNP [dm3] 2R_13016790_SNP [dm6]	T	C	1.193e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18887752	2R_18887752_INS [dm3] 2R_23000229_INS [dm6]	T	TAGT	1.242e^-7	0.005	INTRON twi
3L	1164380	3L_1164380_SNP [dm3] 3L_1164380_SNP [dm6]	A	G	1.322e^-7	0.006	INTRON bab2	regulatory region REDfly_CRMs
X	14910208	X_14910208_SNP [dm3] X_15016175_SNP [dm6]	T	C	1.550e^-7	0.006	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	14910319	X_14910319_SNP [dm3] X_15016286_SNP [dm6]	T	G	1.550e^-7	0.006	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	6622290	X_6622290_SNP [dm3] X_6728257_SNP [dm6]	G	A	1.819e^-7	0.007	INTRON CG3168	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	25025282	3R_25025282_SNP [dm3] 3R_29199560_SNP [dm6]	G	T	1.849e^-7	0.007	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC
2L	12333726	2L_12333726_INS [dm3] 2L_12333726_INS [dm6]	G	GTGTAATGTCCTTGAGCTGC...	1.904e^-7	0.007	INTERGENIC
2L	12444045	2L_12444045_SNP [dm3] 2L_12444045_SNP [dm6]	T	C	1.912e^-7	0.007	SYNONYMOUS_CODING Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13771610	3R_13771610_DEL [dm3] 3R_17945888_DEL [dm6]	GACGGGG	G	1.925e^-7	0.007	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8904164	2R_8904164_SNP [dm3] 2R_13016659_SNP [dm6]	T	A	2.482e^-7	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8904174	2R_8904174_SNP [dm3] 2R_13016669_SNP [dm6]	A	T	2.482e^-7	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17853263	3R_17853263_SNP [dm3] 3R_22027541_SNP [dm6]	C	A	2.545e^-7	0.009	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13790575	3L_13790575_SNP [dm3] 3L_13797475_SNP [dm6]	T	C	3.273e^-7	0.011	INTRON bru-3
X	13197213	X_13197213_SNP [dm3] X_13303180_SNP [dm6]	T	A	4.011e^-7	0.013	UPSTREAM CG1764 & 2 others INTERGENIC
2R	18156797	2R_18156797_SNP [dm3] 2R_22269292_SNP [dm6]	C	G	4.108e^-7	0.013	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	21203559	X_21203559_SNP [dm3] X_21332532_SNP [dm6]	G	A	4.304e^-7	0.014	DOWNSTREAM tty INTRON tty	transposable element FlyBase
2R	18792570	2R_18792570_SNP [dm3] 2R_22905047_SNP [dm6]	C	T	4.470e^-7	0.014	INTRON nahoda	TF binding site mE1_TFBS_HSA
3R	16220024	3R_16220024_SNP [dm3] 3R_20394302_SNP [dm6]	A	G	4.572e^-7	0.014	INTRON Gfrl
3R	25015299	3R_25015299_SNP [dm3] 3R_29189577_SNP [dm6]	G	A	4.923e^-7	0.015	INTRON CG14509
3L	18439241	3L_18439241_SNP [dm3] 3L_18446141_SNP [dm6]	T	A	5.421e^-7	0.016	INTERGENIC
3R	9979113	3R_9979113_SNP [dm3] 3R_14153391_SNP [dm6]	G	A	5.782e^-7	0.017	SYNONYMOUS_CODING CG9722 UPSTREAM CG42500 DOWNSTREAM CR44215
3R	24064267	3R_24064267_SNP [dm3] 3R_28238545_SNP [dm6]	C	G	6.078e^-7	0.017	UTR_3_PRIME CG34354 EXON CR45041
2R	18156244	2R_18156244_SNP [dm3] 2R_22268739_SNP [dm6]	T	C	6.122e^-7	0.017	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7737726	2R_7737726_SNP [dm3] 2R_11850221_SNP [dm6]	G	T	6.134e^-7	0.017	SYNONYMOUS_CODING Sln	TF binding site mE1_TFBS_chinmo
X	2213545	X_2213545_SNP [dm3] X_2319512_SNP [dm6]	A	C	6.259e^-7	0.017	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16082409	3R_16082409_SNP [dm3] 3R_20256687_SNP [dm6]	A	C	6.448e^-7	0.017	INTRON cic
3R	19816028	3R_19816028_SNP [dm3] 3R_23990306_SNP [dm6]	G	A	6.452e^-7	0.017	SYNONYMOUS_CODING CG13604
2L	12708157	2L_12708157_SNP [dm3] 2L_12708157_SNP [dm6]	G	A	7.281e^-7	0.019	SYNONYMOUS_CODING CG6180 UPSTREAM CG15484 DOWNSTREAM CG5787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	957420	3L_957420_DEL [dm3] 3L_957420_DEL [dm6]	TGT	T	7.899e^-7	0.019	INTRON Glut1
3R	25338309	3R_25338309_SNP [dm3] 3R_29512587_SNP [dm6]	T	C	7.961e^-7	0.019	INTERGENIC
2L	11671460	2L_11671460_SNP [dm3] 2L_11671460_SNP [dm6]	G	T	8.127e^-7	0.019	INTERGENIC
2L	11671461	2L_11671461_SNP [dm3] 2L_11671461_SNP [dm6]	G	T	8.672e^-7	0.019	INTERGENIC
3R	17634903	3R_17634903_INS [dm3] 3R_21809181_INS [dm6]	A	AA	8.912e^-7	0.019	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8139247	2L_8139247_SNP [dm3] 2L_8139247_SNP [dm6]	T	C	9.067e^-7	0.019	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	26074512	3R_26074512_SNP [dm3] 3R_30248790_SNP [dm6]	C	G	9.084e^-7	0.019	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	13906946	2R_13906946_SNP [dm3] 2R_18019441_SNP [dm6]	C	T	9.587e^-7	0.019	SPLICE_SITE_REGION CG5084 SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15011381	2R_15011381_SNP [dm3] 2R_19123876_SNP [dm6]	C	A	9.587e^-7	0.019	SYNONYMOUS_CODING CG15117
2R	7722351	2R_7722351_SNP [dm3] 2R_11834846_SNP [dm6]	G	A	9.587e^-7	0.019	INTRON Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17647237	3R_17647237_SNP [dm3] 3R_21821515_SNP [dm6]	T	G	9.587e^-7	0.019	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16707912	X_16707912_SNP [dm3] X_16813879_SNP [dm6]	T	A	9.587e^-7	0.019	INTRON CG4829
3R	9623864	3R_9623864_INS [dm3] 3R_13798142_INS [dm6]	A	AG	1.116e^-6	0.019	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25435612	3R_25435612_SNP [dm3] 3R_29609890_SNP [dm6]	A	T	1.145e^-6	0.019	INTRON alph	TF binding site mE1_TFBS_chinmo
X	2201307	X_2201307_DEL [dm3] X_2307274_DEL [dm6]	CTTATCC	C	1.203e^-6	0.019	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	19895580	3R_19895580_SNP [dm3] 3R_24069858_SNP [dm6]	G	A	1.274e^-6	0.019	INTRON 4EHP
2R	11282469	2R_11282469_SNP [dm3] 2R_15394964_SNP [dm6]	T	C	1.274e^-6	0.019	INTERGENIC
3L	937879	3L_937879_SNP [dm3] 3L_937879_SNP [dm6]	A	G	1.423e^-6	0.019	INTRON Glut1
3L	937880	3L_937880_SNP [dm3] 3L_937880_SNP [dm6]	G	A	1.423e^-6	0.019	INTRON Glut1
3R	11276511	3R_11276511_SNP [dm3] 3R_15450789_SNP [dm6]	C	T	1.435e^-6	0.019	INTRON AdamTS-A
2L	9517095	2L_9517095_SNP [dm3] 2L_9517095_SNP [dm6]	G	A	1.478e^-6	0.019	INTRON CG33298
2R	8903998	2R_8903998_SNP [dm3] 2R_13016493_SNP [dm6]	G	C	1.478e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8904001	2R_8904001_SNP [dm3] 2R_13016496_SNP [dm6]	A	T	1.478e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8904252	2R_8904252_INS [dm3] 2R_13016747_INS [dm6]	A	AACA	1.478e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12777935	2R_12777935_SNP [dm3] 2R_16890430_SNP [dm6]	G	A	1.484e^-6	0.019	INTRON CG8910
2R	12779167	2R_12779167_SNP [dm3] 2R_16891662_SNP [dm6]	C	T	1.484e^-6	0.019	INTRON CG8910	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11290588	2L_11290588_SNP [dm3] 2L_11290588_SNP [dm6]	T	C	1.484e^-6	0.019	DOWNSTREAM CR43409 INTERGENIC
2L	11290612	2L_11290612_SNP [dm3] 2L_11290612_SNP [dm6]	C	A	1.484e^-6	0.019	DOWNSTREAM CR43409 INTERGENIC
2L	11290625	2L_11290625_SNP [dm3] 2L_11290625_SNP [dm6]	T	C	1.484e^-6	0.019	DOWNSTREAM CR43409 INTERGENIC
2R	18868995	2R_18868995_SNP [dm3] 2R_22981472_SNP [dm6]	T	A	1.484e^-6	0.019	INTERGENIC
2R	18869013	2R_18869013_DEL [dm3] 2R_22981490_DEL [dm6]	TCGAGTTACTACT...	T	1.484e^-6	0.019	INTERGENIC
2R	18869065	2R_18869065_SNP [dm3] 2R_22981542_SNP [dm6]	C	G	1.484e^-6	0.019	DOWNSTREAM CG32834 INTERGENIC
2R	18869066	2R_18869066_INS [dm3] 2R_22981543_INS [dm6]	T	TATTTT	1.484e^-6	0.019	DOWNSTREAM CG32834 INTERGENIC
2R	18869448	2R_18869448_SNP [dm3] 2R_22981925_SNP [dm6]	C	A	1.484e^-6	0.019	DOWNSTREAM CG32834 INTERGENIC
2R	18873589	2R_18873589_SNP [dm3] 2R_22986066_SNP [dm6]	A	T	1.484e^-6	0.019	NON_SYNONYMOUS_CODING CG9897 UPSTREAM mir-4939 & 1 other INTRON twi EXON CR42742
2R	18874072	2R_18874072_SNP [dm3] 2R_22986549_SNP [dm6]	G	A	1.484e^-6	0.019	UPSTREAM CG9897 INTRON twi EXON CR42742
2R	3314828	2R_3314828_SNP [dm3] 2R_7427323_SNP [dm6]	T	C	1.484e^-6	0.019	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7527986	2R_7527986_SNP [dm3] 2R_11640481_SNP [dm6]	A	T	1.484e^-6	0.019	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17218771	3R_17218771_SNP [dm3] 3R_21393049_SNP [dm6]	T	C	1.484e^-6	0.019	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	22706781	3R_22706781_SNP [dm3] 3R_26881059_SNP [dm6]	C	G	1.484e^-6	0.019	NON_SYNONYMOUS_CODING ro UPSTREAM T48 DOWNSTREAM CG5500	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17197658	X_17197658_SNP [dm3] X_17303625_SNP [dm6]	C	A	1.484e^-6	0.019	INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	17404321	X_17404321_SNP [dm3] X_17510288_SNP [dm6]	T	A	1.484e^-6	0.019	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17405694	X_17405694_SNP [dm3] X_17511661_SNP [dm6]	C	T	1.484e^-6	0.019	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17406953	X_17406953_SNP [dm3] X_17512920_SNP [dm6]	T	A	1.484e^-6	0.019	INTRON CG43658
2R	14066479	2R_14066479_SNP [dm3] 2R_18178974_SNP [dm6]	A	T	1.508e^-6	0.019	INTRON CG5726
2R	14066534	2R_14066534_SNP [dm3] 2R_18179029_SNP [dm6]	T	A	1.508e^-6	0.019	INTRON CG5726
3R	25025390	3R_25025390_SNP [dm3] 3R_29199668_SNP [dm6]	C	T	1.513e^-6	0.019	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18568949	2R_18568949_SNP [dm3] 2R_22681444_SNP [dm6]	A	G	1.527e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14318772	2L_14318772_SNP [dm3] 2L_14318772_SNP [dm6]	C	A	1.568e^-6	0.019	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13589140	2R_13589140_SNP [dm3] 2R_17701635_SNP [dm6]	T	C	1.648e^-6	0.019	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
X	1749293	X_1749293_DEL [dm3] X_1855260_DEL [dm6]	CACGG	GTT	1.701e^-6	0.019	INTERGENIC
X	1749301	X_1749301_SNP [dm3] X_1855268_SNP [dm6]	G	C	1.701e^-6	0.019	INTERGENIC
X	1749921	X_1749921_SNP [dm3] X_1855888_SNP [dm6]	A	C	1.701e^-6	0.019	INTERGENIC
2L	11901992	2L_11901992_SNP [dm3] 2L_11901992_SNP [dm6]	T	C	1.721e^-6	0.019	INTRON Pde1c
2R	19529551	2R_19529551_DEL [dm3] 2R_23642028_DEL [dm6]	GATTTGCCG	G	1.729e^-6	0.019	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10090505	2L_10090505_SNP [dm3] 2L_10090505_SNP [dm6]	C	T	1.736e^-6	0.019	DOWNSTREAM CG13133 INTRON CG44153
2L	10090520	2L_10090520_SNP [dm3] 2L_10090520_SNP [dm6]	T	C	1.736e^-6	0.019	DOWNSTREAM CG13133 INTRON CG44153
2L	10790666	2L_10790666_SNP [dm3] 2L_10790666_SNP [dm6]	T	C	1.736e^-6	0.019	UTR_3_PRIME CG31870 INTRON CG31869
2L	10790737	2L_10790737_SNP [dm3] 2L_10790737_SNP [dm6]	G	T	1.736e^-6	0.019	UTR_3_PRIME CG31870 INTRON CG31869 & 1 other
2L	10874452	2L_10874452_SNP [dm3] 2L_10874452_SNP [dm6]	A	T	1.736e^-6	0.019	INTERGENIC
2L	15481896	2L_15481896_SNP [dm3] 2L_15481896_SNP [dm6]	G	A	1.736e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8334488	2L_8334488_SNP [dm3] 2L_8334488_SNP [dm6]	A	T	1.736e^-6	0.019	INTERGENIC
2R	10991562	2R_10991562_SNP [dm3] 2R_15104057_SNP [dm6]	T	A	1.736e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	801191	2R_801191_SNP [dm3] 2R_4913686_SNP [dm6]	C	T	1.736e^-6	0.019	INTERGENIC	transposable element FlyBase
3L	11442288	3L_11442288_SNP [dm3] 3L_11449188_SNP [dm6]	C	T	1.736e^-6	0.019	INTERGENIC
3L	19266092	3L_19266092_SNP [dm3] 3L_19272992_SNP [dm6]	C	A	1.736e^-6	0.019	SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad
3L	19308242	3L_19308242_SNP [dm3] 3L_19315142_SNP [dm6]	T	C	1.736e^-6	0.019	INTRON pip
3L	2668979	3L_2668979_INS [dm3] 3L_2668979_INS [dm6]	G	GC	1.736e^-6	0.019	INTRON Fife
3L	3572015	3L_3572015_SNP [dm3] 3L_3572015_SNP [dm6]	G	T	1.736e^-6	0.019	INTRON Eip63E
3L	8687447	3L_8687447_SNP [dm3] 3L_8694347_SNP [dm6]	G	A	1.736e^-6	0.019	INTERGENIC
3L	8687453	3L_8687453_SNP [dm3] 3L_8694353_SNP [dm6]	G	T	1.736e^-6	0.019	INTERGENIC
3R	10059186	3R_10059186_SNP [dm3] 3R_14233464_SNP [dm6]	A	G	1.736e^-6	0.019	INTERGENIC
3R	10797544	3R_10797544_SNP [dm3] 3R_14971822_SNP [dm6]	A	T	1.736e^-6	0.019	INTERGENIC
3R	10797612	3R_10797612_SNP [dm3] 3R_14971890_SNP [dm6]	G	A	1.736e^-6	0.019	INTERGENIC
3R	13960009	3R_13960009_SNP [dm3] 3R_18134287_SNP [dm6]	G	T	1.736e^-6	0.019	UTR_3_PRIME sr DOWNSTREAM sr
3R	23063572	3R_23063572_SNP [dm3] 3R_27237850_SNP [dm6]	A	T	1.736e^-6	0.019	SPLICE_SITE_REGION CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23063703	3R_23063703_DEL [dm3] 3R_27237981_DEL [dm6]	GG	G	1.736e^-6	0.019	UTR_5_PRIME CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23064425	3R_23064425_SNP [dm3] 3R_27238703_SNP [dm6]	T	A	1.736e^-6	0.019	SYNONYMOUS_CODING CG31064 UPSTREAM CG31064 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23559426	3R_23559426_SNP [dm3] 3R_27733704_SNP [dm6]	A	G	1.736e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26790015	3R_26790015_SNP [dm3] 3R_30964293_SNP [dm6]	T	A	1.736e^-6	0.019	UTR_5_PRIME Ctr1C
3R	26801922	3R_26801922_SNP [dm3] 3R_30976200_SNP [dm6]	G	A	1.736e^-6	0.019	INTRON 5-HT7
3R	26801933	3R_26801933_SNP [dm3] 3R_30976211_SNP [dm6]	A	C	1.736e^-6	0.019	INTRON 5-HT7
3R	9710627	3R_9710627_SNP [dm3] 3R_13884905_SNP [dm6]	C	A	1.736e^-6	0.019	INTERGENIC
3R	9710628	3R_9710628_SNP [dm3] 3R_13884906_SNP [dm6]	T	C	1.736e^-6	0.019	INTERGENIC
3R	9970339	3R_9970339_SNP [dm3] 3R_14144617_SNP [dm6]	G	T	1.736e^-6	0.019	INTERGENIC
3R	9971153	3R_9971153_DEL [dm3] 3R_14145431_DEL [dm6]	TTG	C	1.736e^-6	0.019	INTERGENIC
3R	9975269	3R_9975269_SNP [dm3] 3R_14149547_SNP [dm6]	A	G	1.736e^-6	0.019	SYNONYMOUS_CODING CG14355
3R	9975893	3R_9975893_SNP [dm3] 3R_14150171_SNP [dm6]	G	A	1.736e^-6	0.019	SYNONYMOUS_CODING CG14355	TF binding site mE1_TFBS_cad
X	12562340	X_12562340_SNP [dm3] X_12668307_SNP [dm6]	G	T	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12562371	X_12562371_SNP [dm3] X_12668338_SNP [dm6]	C	G	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12562411	X_12562411_SNP [dm3] X_12668378_SNP [dm6]	A	T	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12562524	X_12562524_SNP [dm3] X_12668491_SNP [dm6]	T	A	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12562753	X_12562753_SNP [dm3] X_12668720_SNP [dm6]	G	A	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12562801	X_12562801_SNP [dm3] X_12668768_SNP [dm6]	C	A	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12562932	X_12562932_SNP [dm3] X_12668899_SNP [dm6]	G	A	1.736e^-6	0.019	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
X	14766567	X_14766567_SNP [dm3] X_14872534_SNP [dm6]	A	G	1.736e^-6	0.019	INTRON Flo2
X	19422565	X_19422565_SNP [dm3] X_19528532_SNP [dm6]	C	A	1.736e^-6	0.019	INTRON CoRest
X	7012902	X_7012902_SNP [dm3] X_7118869_SNP [dm6]	T	G	1.736e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6256050	3L_6256050_SNP [dm3] 3L_6262950_SNP [dm6]	C	T	1.736e^-6	0.019	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6256383	3L_6256383_SNP [dm3] 3L_6263283_SNP [dm6]	C	T	1.736e^-6	0.019	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	937249	3L_937249_SNP [dm3] 3L_937249_SNP [dm6]	C	T	1.736e^-6	0.019	INTRON Glut1
X	16694952	X_16694952_SNP [dm3] X_16800919_SNP [dm6]	A	G	1.736e^-6	0.019	UPSTREAM CG4789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2879931	3L_2879931_SNP [dm3] 3L_2879931_SNP [dm6]	G	A	1.757e^-6	0.019	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2214360	X_2214360_SNP [dm3] X_2320327_SNP [dm6]	A	T	1.757e^-6	0.019	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2214435	X_2214435_SNP [dm3] X_2320402_SNP [dm6]	C	G	1.757e^-6	0.019	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26642580	3R_26642580_SNP [dm3] 3R_30816858_SNP [dm6]	C	T	1.800e^-6	0.019	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_cad
X	17407036	X_17407036_SNP [dm3] X_17513003_SNP [dm6]	C	A	1.821e^-6	0.019	INTRON CG43658
3R	17634812	3R_17634812_SNP [dm3] 3R_21809090_SNP [dm6]	T	G	1.924e^-6	0.019	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9623801	3R_9623801_SNP [dm3] 3R_13798079_SNP [dm6]	A	G	1.939e^-6	0.019	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8904319	2R_8904319_SNP [dm3] 2R_13016814_SNP [dm6]	T	A	2.027e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8904247	2R_8904247_SNP [dm3] 2R_13016742_SNP [dm6]	A	C	2.034e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16678758	X_16678758_SNP [dm3] X_16784725_SNP [dm6]	T	C	2.044e^-6	0.019	DOWNSTREAM CG9609 INTRON mRpL22	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13589151	2R_13589151_SNP [dm3] 2R_17701646_SNP [dm6]	G	A	2.072e^-6	0.019	UPSTREAM snoRNA:snR38:54Eb & 4 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
3L	13832120	3L_13832120_SNP [dm3] 3L_13839020_SNP [dm6]	A	G	2.099e^-6	0.019	DOWNSTREAM CG43184 INTERGENIC
3L	13832174	3L_13832174_SNP [dm3] 3L_13839074_SNP [dm6]	T	C	2.099e^-6	0.019	DOWNSTREAM CG43184 INTERGENIC
3R	23063753	3R_23063753_SNP [dm3] 3R_27238031_SNP [dm6]	T	G	2.105e^-6	0.019	UTR_5_PRIME CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8175237	2R_8175237_SNP [dm3] 2R_12287732_SNP [dm6]	T	G	2.181e^-6	0.019	INTRON CG42700
X	17405190	X_17405190_SNP [dm3] X_17511157_SNP [dm6]	A	C	2.193e^-6	0.019	INTRON CG43658	TF binding site mE1_TFBS_sens
2R	12778910	2R_12778910_SNP [dm3] 2R_16891405_SNP [dm6]	G	A	2.203e^-6	0.019	INTRON CG8910	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16021967	2R_16021967_SNP [dm3] 2R_20134462_SNP [dm6]	G	A	2.273e^-6	0.019	INTERGENIC
X	13871544	X_13871544_SNP [dm3] X_13977511_SNP [dm6]	A	G	2.283e^-6	0.019	INTRON mamo
2R	9089868	2R_9089868_SNP [dm3] 2R_13202363_SNP [dm6]	G	A	2.289e^-6	0.019	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad
3R	21476463	3R_21476463_SNP [dm3] 3R_25650741_SNP [dm6]	A	G	2.462e^-6	0.019	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21476475	3R_21476475_SNP [dm3] 3R_25650753_SNP [dm6]	A	G	2.462e^-6	0.019	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8907493	3L_8907493_DEL [dm3] 3L_8914393_DEL [dm6]	AA	A	2.476e^-6	0.019	UPSTREAM CR43970 INTRON Tsp66E	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15326416	2L_15326416_SNP [dm3] 2L_15326416_SNP [dm6]	T	C	2.509e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12402257	X_12402257_SNP [dm3] X_12508224_SNP [dm6]	A	G	2.509e^-6	0.019	INTRON CG2556	TF binding site BDTNP1_TFBS_da
2L	3670432	2L_3670432_SNP [dm3] 2L_3670432_SNP [dm6]	A	T	2.516e^-6	0.019	UPSTREAM Sfp24Bb INTRON CG34340 & 1 other
3L	2880001	3L_2880001_SNP [dm3] 3L_2880001_SNP [dm6]	G	C	2.522e^-6	0.019	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8009986	2L_8009986_SNP [dm3] 2L_8009986_SNP [dm6]	G	A	2.522e^-6	0.019	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	8010303	2L_8010303_SNP [dm3] 2L_8010303_SNP [dm6]	T	C	2.522e^-6	0.019	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8010314	2L_8010314_SNP [dm3] 2L_8010314_SNP [dm6]	G	A	2.522e^-6	0.019	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13725139	2R_13725139_SNP [dm3] 2R_17837634_SNP [dm6]	T	A	2.522e^-6	0.019	INTRON grh	TF binding site BDTNP1_TFBS_da
2R	13740965	2R_13740965_SNP [dm3] 2R_17853460_SNP [dm6]	A	G	2.522e^-6	0.019	SYNONYMOUS_CODING CG30323 INTRON olf186-F
3L	10272000	3L_10272000_INS [dm3] 3L_10278900_INS [dm6]	T	TTT	2.522e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14155930	3L_14155930_SNP [dm3] 3L_14162830_SNP [dm6]	C	G	2.522e^-6	0.019	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2714916	3L_2714916_SNP [dm3] 3L_2714916_SNP [dm6]	C	G	2.522e^-6	0.019	INTERGENIC
3L	2715399	3L_2715399_SNP [dm3] 3L_2715399_SNP [dm6]	C	G	2.522e^-6	0.019	INTERGENIC
3L	2875185	3L_2875185_SNP [dm3] 3L_2875185_SNP [dm6]	A	T	2.522e^-6	0.019	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2875303	3L_2875303_SNP [dm3] 3L_2875303_SNP [dm6]	T	C	2.522e^-6	0.019	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2875477	3L_2875477_SNP [dm3] 3L_2875477_SNP [dm6]	G	A	2.522e^-6	0.019	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2877013	3L_2877013_SNP [dm3] 3L_2877013_SNP [dm6]	G	T	2.522e^-6	0.019	INTRON CG43444
3L	2877495	3L_2877495_SNP [dm3] 3L_2877495_SNP [dm6]	T	G	2.522e^-6	0.019	INTRON CG43444
3L	2877575	3L_2877575_SNP [dm3] 3L_2877575_SNP [dm6]	C	T	2.522e^-6	0.019	INTRON CG43444
3L	2880717	3L_2880717_SNP [dm3] 3L_2880717_SNP [dm6]	C	G	2.522e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2882284	3L_2882284_SNP [dm3] 3L_2882284_SNP [dm6]	C	T	2.522e^-6	0.019	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	2882615	3L_2882615_SNP [dm3] 3L_2882615_SNP [dm6]	G	C	2.522e^-6	0.019	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	2883956	3L_2883956_SNP [dm3] 3L_2883956_SNP [dm6]	C	T	2.522e^-6	0.019	UTR_3_PRIME spz5 DOWNSTREAM CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	3565313	3L_3565313_SNP [dm3] 3L_3565313_SNP [dm6]	G	C	2.522e^-6	0.019	INTRON Eip63E
3L	3596154	3L_3596154_SNP [dm3] 3L_3596154_SNP [dm6]	T	A	2.522e^-6	0.019	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	942476	3L_942476_SNP [dm3] 3L_942476_SNP [dm6]	T	C	2.522e^-6	0.019	INTRON Glut1
3R	17451622	3R_17451622_DEL [dm3] 3R_21625900_DEL [dm6]	TGGAGGA	T	2.522e^-6	0.019	SPLICE_SITE_REGION E2f INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17451631	3R_17451631_SNP [dm3] 3R_21625909_SNP [dm6]	A	G	2.522e^-6	0.019	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26071117	3R_26071117_SNP [dm3] 3R_30245395_SNP [dm6]	G	T	2.522e^-6	0.019	INTRON CG9733
3R	26552573	3R_26552573_SNP [dm3] 3R_30726851_SNP [dm6]	A	G	2.522e^-6	0.019	NON_SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4034722	3R_4034722_SNP [dm3] 3R_8209000_SNP [dm6]	T	A	2.522e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_sens
X	12963595	X_12963595_SNP [dm3] X_13069562_SNP [dm6]	A	G	2.522e^-6	0.019	INTRON rad
X	12963604	X_12963604_SNP [dm3] X_13069571_SNP [dm6]	A	T	2.522e^-6	0.019	INTRON rad
X	12963606	X_12963606_SNP [dm3] X_13069573_SNP [dm6]	G	T	2.522e^-6	0.019	INTRON rad
X	3731755	X_3731755_SNP [dm3] X_3837722_SNP [dm6]	A	T	2.522e^-6	0.019	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	11969470	2R_11969470_SNP [dm3] 2R_16081965_SNP [dm6]	C	A	2.564e^-6	0.019	UTR_3_PRIME Dg
2R	13185220	2R_13185220_SNP [dm3] 2R_17297715_SNP [dm6]	C	A	2.564e^-6	0.019	INTRON mbl
3L	1140097	3L_1140097_SNP [dm3] 3L_1140097_SNP [dm6]	A	G	2.564e^-6	0.019	DOWNSTREAM bab2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19817057	3R_19817057_SNP [dm3] 3R_23991335_SNP [dm6]	G	C	2.564e^-6	0.019	UPSTREAM CG13604 INTRON CG13604
3R	2827937	3R_2827937_SNP [dm3] 3R_7002215_SNP [dm6]	G	A	2.564e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_cad
X	19727256	X_19727256_SNP [dm3] X_19833223_SNP [dm6]	T	A	2.564e^-6	0.019	UTR_3_PRIME pico
3L	6256428	3L_6256428_SNP [dm3] 3L_6263328_SNP [dm6]	C	A	2.565e^-6	0.019	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6256452	3L_6256452_SNP [dm3] 3L_6263352_SNP [dm6]	C	G	2.565e^-6	0.019	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14340101	2L_14340101_SNP [dm3] 2L_14340101_SNP [dm6]	G	A	2.595e^-6	0.019	DOWNSTREAM CG15286 INTRON CG33090
3L	6327588	3L_6327588_INS [dm3] 3L_6334488_INS [dm6]	T	TT	2.595e^-6	0.019	INTRON CG13300
2R	14312320	2R_14312320_SNP [dm3] 2R_18424815_SNP [dm6]	G	A	2.606e^-6	0.019	INTRON CG5174	TF binding site mE1_TFBS_inv
2R	15400892	2R_15400892_SNP [dm3] 2R_19513387_SNP [dm6]	T	G	2.606e^-6	0.019	NON_SYNONYMOUS_CODING Ir56d
2R	16525498	2R_16525498_SNP [dm3] 2R_20637993_SNP [dm6]	C	T	2.606e^-6	0.019	SYNONYMOUS_CODING CG13436 INTRON rig	TF binding site mE1_TFBS_sens
2R	18869008	2R_18869008_SNP [dm3] 2R_22981485_SNP [dm6]	A	G	2.606e^-6	0.019	INTERGENIC
3L	18615538	3L_18615538_SNP [dm3] 3L_18622438_SNP [dm6]	T	A	2.606e^-6	0.019	UPSTREAM bora & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	25336814	3R_25336814_SNP [dm3] 3R_29511092_SNP [dm6]	C	G	2.606e^-6	0.019	INTERGENIC
X	10777172	X_10777172_SNP [dm3] X_10883139_SNP [dm6]	G	A	2.606e^-6	0.019	INTRON Ork1
2L	3863452	2L_3863452_SNP [dm3] 2L_3863452_SNP [dm6]	G	A	2.653e^-6	0.02	INTRON CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	18954591	2L_18954591_SNP [dm3] 2L_18954591_SNP [dm6]	C	T	2.712e^-6	0.02	UPSTREAM CG10621 DOWNSTREAM CG10623 EXON CR44741
2L	18955151	2L_18955151_SNP [dm3] 2L_18955151_SNP [dm6]	A	G	2.712e^-6	0.02	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18962211	2L_18962211_SNP [dm3] 2L_18962211_SNP [dm6]	A	C	2.712e^-6	0.02	UTR_3_PRIME Nak INTRON Nak
2L	7335337	2L_7335337_SNP [dm3] 2L_7335337_SNP [dm6]	T	A	2.712e^-6	0.02	INTRON Wnt6
2R	13023087	2R_13023087_SNP [dm3] 2R_17135582_SNP [dm6]	C	T	2.712e^-6	0.02	UPSTREAM CR44391 & 1 other DOWNSTREAM CG11400 INTERGENIC
3R	27626402	3R_27626402_DEL [dm3] 3R_31800680_DEL [dm6]	TA	T	2.712e^-6	0.02	UPSTREAM Ir100a DOWNSTREAM Acf1 INTRON CG42233
3R	9542224	3R_9542224_SNP [dm3] 3R_13716502_SNP [dm6]	G	T	2.712e^-6	0.02	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
X	15163310	X_15163310_SNP [dm3] X_15269277_SNP [dm6]	T	C	2.778e^-6	0.02	INTERGENIC
3R	25360294	3R_25360294_SNP [dm3] 3R_29534572_SNP [dm6]	A	C	2.814e^-6	0.02	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11694526	2R_11694526_SNP [dm3] 2R_15807021_SNP [dm6]	T	A	2.908e^-6	0.021	INTRON tun & 1 other
3L	19316292	3L_19316292_DEL [dm3] 3L_19323192_DEL [dm6]	AA	A	2.908e^-6	0.021	INTRON pip
3R	25317921	3R_25317921_SNP [dm3] 3R_29492199_SNP [dm6]	G	A	2.908e^-6	0.021	SYNONYMOUS_CODING CG2310 DOWNSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7853829	3R_7853829_SNP [dm3] 3R_12028107_SNP [dm6]	T	G	2.908e^-6	0.021	UTR_3_PRIME CG42505 & 2 others INTRON CG31358
X	21226438	X_21226438_SNP [dm3] X_21355411_SNP [dm6]	T	C	2.926e^-6	0.021	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13310510	2L_13310510_SNP [dm3] 2L_13310510_SNP [dm6]	A	C	2.927e^-6	0.021	INTRON CG43778
2L	11929267	2L_11929267_SNP [dm3] 2L_11929267_SNP [dm6]	C	T	2.946e^-6	0.021	UPSTREAM Pde1c INTERGENIC
3R	24615516	3R_24615516_SNP [dm3] 3R_28789794_SNP [dm6]	C	T	2.946e^-6	0.021	NON_SYNONYMOUS_CODING CG34295 UPSTREAM intr	TF binding site mE1_TFBS_sens
X	11106672	X_11106672_INS [dm3] X_11212639_INS [dm6]	A	AGCTGGTGTTCATAATGA...	3.009e^-6	0.021	INTERGENIC
3L	2879964	3L_2879964_SNP [dm3] 3L_2879964_SNP [dm6]	G	C	3.010e^-6	0.021	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8747745	2L_8747745_SNP [dm3] 2L_8747745_SNP [dm6]	G	T	3.016e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	8160707	2R_8160707_SNP [dm3] 2R_12273202_SNP [dm6]	T	C	3.034e^-6	0.021	INTRON Cam
3L	20784925	3L_20784925_SNP [dm3] 3L_20791825_SNP [dm6]	C	G	3.189e^-6	0.022	INTRON Six4
2R	8904398	2R_8904398_SNP [dm3] 2R_13016893_SNP [dm6]	C	T	3.256e^-6	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10778881	3R_10778881_SNP [dm3] 3R_14953159_SNP [dm6]	G	T	3.300e^-6	0.022	INTERGENIC
2R	4650619	2R_4650619_SNP [dm3] 2R_8763114_SNP [dm6]	C	T	3.305e^-6	0.022	INTERGENIC
2R	15397155	2R_15397155_SNP [dm3] 2R_19509650_SNP [dm6]	T	C	3.376e^-6	0.023	UTR_3_PRIME Ir56b UPSTREAM Ir56c
X	1664167	X_1664167_SNP [dm3] X_1770134_SNP [dm6]	C	A	3.390e^-6	0.023	INTERGENIC
2R	13589148	2R_13589148_SNP [dm3] 2R_17701643_SNP [dm6]	A	C	3.455e^-6	0.023	UPSTREAM snoRNA:snR38:54Eb & 4 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
X	5467440	X_5467440_DEL [dm3] X_5573407_DEL [dm6]	AGTTACATT	A	3.471e^-6	0.023	INTERGENIC
X	5467451	X_5467451_SNP [dm3] X_5573418_SNP [dm6]	A	T	3.471e^-6	0.023	INTERGENIC
X	2213555	X_2213555_SNP [dm3] X_2319522_SNP [dm6]	G	A	3.531e^-6	0.023	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7326368	2R_7326368_SNP [dm3] 2R_11438863_SNP [dm6]	A	G	3.569e^-6	0.024	INTRON CG7777
2L	8871097	2L_8871097_SNP [dm3] 2L_8871097_SNP [dm6]	C	T	3.664e^-6	0.024	INTERGENIC
X	3731822	X_3731822_SNP [dm3] X_3837789_SNP [dm6]	A	T	3.678e^-6	0.024	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	19740071	X_19740071_SNP [dm3] X_19846038_SNP [dm6]	A	G	3.680e^-6	0.024	UPSTREAM pico INTRON pico
X	19743624	X_19743624_SNP [dm3] X_19849591_SNP [dm6]	A	G	3.680e^-6	0.024	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8081620	X_8081620_SNP [dm3] X_8187587_SNP [dm6]	C	T	3.680e^-6	0.024	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8902773	2R_8902773_SNP [dm3] 2R_13015268_SNP [dm6]	C	A	3.713e^-6	0.024	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20845056	X_20845056_SNP [dm3] X_20974029_SNP [dm6]	T	C	3.755e^-6	0.024	INTERGENIC
2R	18964323	2R_18964323_SNP [dm3] 2R_23076800_SNP [dm6]	A	G	3.764e^-6	0.024	NON_SYNONYMOUS_CODING Art7 UTR_3_PRIME CG3085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7079451	X_7079451_SNP [dm3] X_7185418_SNP [dm6]	C	T	3.829e^-6	0.024	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da
3R	19022844	3R_19022844_SNP [dm3] 3R_23197122_SNP [dm6]	C	T	3.847e^-6	0.024	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23009660	3R_23009660_SNP [dm3] 3R_27183938_SNP [dm6]	G	A	3.852e^-6	0.024	INTRON Ser
X	21205575	X_21205575_SNP [dm3] X_21334548_SNP [dm6]	C	A	3.874e^-6	0.024	INTRON tty
X	13367276	X_13367276_SNP [dm3] X_13473243_SNP [dm6]	G	A	3.915e^-6	0.024	INTRON Neto
X	13367280	X_13367280_SNP [dm3] X_13473247_SNP [dm6]	T	A	3.915e^-6	0.024	INTRON Neto
X	3732257	X_3732257_DEL [dm3] X_3838224_DEL [dm6]	CAATCCC	C	3.915e^-6	0.024	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13589061	2R_13589061_SNP [dm3] 2R_17701556_SNP [dm6]	T	C	3.961e^-6	0.024	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	13589113	2R_13589113_SNP [dm3] 2R_17701608_SNP [dm6]	T	A	3.961e^-6	0.024	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
2R	13589898	2R_13589898_DEL [dm3] 2R_17702393_DEL [dm6]	TT	T	3.961e^-6	0.024	UPSTREAM snoRNA:U31:54Ed & 3 others DOWNSTREAM snoRNA:Me28S-G3277a & 4 others INTRON Uhg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14555409	2R_14555409_SNP [dm3] 2R_18667904_SNP [dm6]	T	A	4.001e^-6	0.024	SYNONYMOUS_CODING edl
3L	6328956	3L_6328956_SNP [dm3] 3L_6335856_SNP [dm6]	G	C	4.001e^-6	0.024	INTRON CG13300	TF binding site mE1_TFBS_inv
3L	6333142	3L_6333142_DEL [dm3] 3L_6340042_DEL [dm6]	TTT	T	4.001e^-6	0.024	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
3L	6335345	3L_6335345_INS [dm3] 3L_6342245_INS [dm6]	T	TG	4.001e^-6	0.024	INTRON CG13300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3732403	X_3732403_SNP [dm3] X_3838370_SNP [dm6]	G	C	4.001e^-6	0.024	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15378922	2L_15378922_SNP [dm3] 2L_15378922_SNP [dm6]	A	G	4.002e^-6	0.024	INTERGENIC
2R	7676042	2R_7676042_SNP [dm3] 2R_11788537_SNP [dm6]	C	G	4.139e^-6	0.025	NON_SYNONYMOUS_CODING Ir48c INTRON ths	TF binding site mE1_TFBS_sens
X	2212964	X_2212964_INS [dm3] X_2318931_INS [dm6]	T	TAGTTATGTGGAAGGTTGAT...	4.199e^-6	0.025	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	25337421	3R_25337421_SNP [dm3] 3R_29511699_SNP [dm6]	G	A	4.216e^-6	0.025	INTERGENIC
3R	22978681	3R_22978681_SNP [dm3] 3R_27152959_SNP [dm6]	C	T	4.269e^-6	0.026	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2826070	3R_2826070_SNP [dm3] 3R_7000348_SNP [dm6]	A	T	4.282e^-6	0.026	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11697953	2R_11697953_SNP [dm3] 2R_15810448_SNP [dm6]	C	T	4.391e^-6	0.026	INTRON tun & 1 other
2R	9683689	2R_9683689_DEL [dm3] 2R_13796184_DEL [dm6]	TT	T	4.606e^-6	0.027	INTRON Cpr50Cb
X	19914159	X_19914159_SNP [dm3] X_20020126_SNP [dm6]	C	A	4.654e^-6	0.028	INTRON Dop2R
2R	13737685	2R_13737685_SNP [dm3] 2R_17850180_SNP [dm6]	A	G	4.779e^-6	0.028	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13598266	2R_13598266_SNP [dm3] 2R_17710761_SNP [dm6]	A	G	4.961e^-6	0.029	INTRON CG6424
3R	19825898	3R_19825898_SNP [dm3] 3R_24000176_SNP [dm6]	A	T	4.984e^-6	0.029	SPLICE_SITE_REGION KrT95D INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9020524	2L_9020524_SNP [dm3] 2L_9020524_SNP [dm6]	G	T	5.014e^-6	0.029	INTERGENIC
2R	6039580	2R_6039580_SNP [dm3] 2R_10152075_SNP [dm6]	C	T	5.014e^-6	0.029	UPSTREAM CR45133 INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10426447	3R_10426447_SNP [dm3] 3R_14600725_SNP [dm6]	T	C	5.014e^-6	0.029	INTRON stumps
X	16693208	X_16693208_SNP [dm3] X_16799175_SNP [dm6]	C	A	5.074e^-6	0.029	SPLICE_SITE_REGION CG9132 INTRON CG9132
3L	18882179	3L_18882179_SNP [dm3] 3L_18889079_SNP [dm6]	T	A	5.075e^-6	0.029	INTRON CG3961
X	2201288	X_2201288_SNP [dm3] X_2307255_SNP [dm6]	A	G	5.079e^-6	0.029	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	16527733	2R_16527733_SNP [dm3] 2R_20640228_SNP [dm6]	C	A	5.082e^-6	0.029	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12764715	2L_12764715_INS [dm3] 2L_12764715_INS [dm6]	A	AACA	5.357e^-6	0.031	INTERGENIC
3L	923929	3L_923929_SNP [dm3] 3L_923929_SNP [dm6]	C	T	5.377e^-6	0.031	INTRON Glut1
2R	9735680	2R_9735680_SNP [dm3] 2R_13848175_SNP [dm6]	T	C	5.469e^-6	0.031	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19941853	2L_19941853_SNP [dm3] 2L_19941853_SNP [dm6]	T	C	5.559e^-6	0.031	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9974386	3L_9974386_SNP [dm3] 3L_9981286_SNP [dm6]	A	T	5.699e^-6	0.032	INTRON dpr6
X	5467404	X_5467404_SNP [dm3] X_5573371_SNP [dm6]	G	A	5.800e^-6	0.033	INTERGENIC
3L	3774915	3L_3774915_SNP [dm3] 3L_3774915_SNP [dm6]	A	T	5.820e^-6	0.033	INTRON CG32264
2R	9528887	2R_9528887_SNP [dm3] 2R_13641382_SNP [dm6]	A	C	5.853e^-6	0.033	INTRON fas
3L	18439242	3L_18439242_SNP [dm3] 3L_18446142_SNP [dm6]	A	C	5.865e^-6	0.033	INTERGENIC
2L	15937588	2L_15937588_SNP [dm3] 2L_15937588_SNP [dm6]	G	A	5.910e^-6	0.033	INTRON beat-Ib
3R	21795817	3R_21795817_SNP [dm3] 3R_25970095_SNP [dm6]	A	G	5.910e^-6	0.033	UTR_5_PRIME CG42261
3L	4175500	3L_4175500_SNP [dm3] 3L_4175500_SNP [dm6]	C	T	5.921e^-6	0.033	SYNONYMOUS_CODING Teh4 INTRON CG18675
2R	16528459	2R_16528459_SNP [dm3] 2R_20640954_SNP [dm6]	T	A	6.021e^-6	0.033	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	15287413	3L_15287413_SNP [dm3] 3L_15294313_SNP [dm6]	T	C	6.056e^-6	0.033	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	15747986	2R_15747986_SNP [dm3] 2R_19860481_SNP [dm6]	A	T	6.103e^-6	0.033	UPSTREAM CR44570 INTRON CR44571
3L	6329702	3L_6329702_SNP [dm3] 3L_6336602_SNP [dm6]	T	C	6.195e^-6	0.034	INTRON CG13300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8139169	2L_8139169_SNP [dm3] 2L_8139169_SNP [dm6]	C	T	6.210e^-6	0.034	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	7867797	3R_7867797_SNP [dm3] 3R_12042075_SNP [dm6]	A	G	6.226e^-6	0.034	SYNONYMOUS_CODING CG14736
3R	19022272	3R_19022272_SNP [dm3] 3R_23196550_SNP [dm6]	C	G	6.603e^-6	0.036	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	13566865	2R_13566865_SNP [dm3] 2R_17679360_SNP [dm6]	T	C	6.680e^-6	0.036	UPSTREAM Sema-1b INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13638157	2R_13638157_SNP [dm3] 2R_17750652_SNP [dm6]	A	T	6.680e^-6	0.036	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18390033	2R_18390033_SNP [dm3] 2R_22502528_SNP [dm6]	A	C	6.680e^-6	0.036	INTRON px
3L	1355314	3L_1355314_SNP [dm3] 3L_1355314_SNP [dm6]	A	T	6.680e^-6	0.036	INTRON Ptp61F	TF binding site mE1_TFBS_inv
3R	9632064	3R_9632064_SNP [dm3] 3R_13806342_SNP [dm6]	T	G	6.680e^-6	0.036	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18219977	3L_18219977_SNP [dm3] 3L_18226877_SNP [dm6]	G	A	6.682e^-6	0.036	INTERGENIC
3R	19309056	3R_19309056_SNP [dm3] 3R_23483334_SNP [dm6]	A	G	6.748e^-6	0.036	SYNONYMOUS_CODING Ir94f UPSTREAM Ir94g	TF binding site mE1_TFBS_sens
2L	8139424	2L_8139424_SNP [dm3] 2L_8139424_SNP [dm6]	A	T	6.786e^-6	0.036	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	8139429	2L_8139429_SNP [dm3] 2L_8139429_SNP [dm6]	T	C	6.786e^-6	0.036	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	13589761	2R_13589761_SNP [dm3] 2R_17702256_SNP [dm6]	T	C	6.799e^-6	0.036	UPSTREAM snoRNA:U31:54Ed & 3 others DOWNSTREAM snoRNA:U27:54Ea & 4 others INTRON Uhg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16082578	3R_16082578_SNP [dm3] 3R_20256856_SNP [dm6]	A	G	6.957e^-6	0.036	INTRON cic
3L	933214	3L_933214_SNP [dm3] 3L_933214_SNP [dm6]	C	G	7.084e^-6	0.037	INTRON Glut1
2R	18825243	2R_18825243_SNP [dm3] 2R_22937720_SNP [dm6]	T	G	7.097e^-6	0.037	UPSTREAM CG3800 & 1 other INTRON CG9849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1792186	3L_1792186_DEL [dm3] 3L_1792186_DEL [dm6]	TCCT	T	7.116e^-6	0.037	CODON_DELETION dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13960308	2R_13960308_SNP [dm3] 2R_18072803_SNP [dm6]	C	A	7.117e^-6	0.037	INTRON CG34386
3R	16019299	3R_16019299_SNP [dm3] 3R_20193577_SNP [dm6]	A	T	7.378e^-6	0.038	INTERGENIC
3L	9552484	3L_9552484_SNP [dm3] 3L_9559384_SNP [dm6]	A	G	7.422e^-6	0.038	INTRON CG42673
3R	25222390	3R_25222390_SNP [dm3] 3R_29396668_SNP [dm6]	A	T	7.430e^-6	0.038	INTRON Ptp99A
3L	6110878	3L_6110878_SNP [dm3] 3L_6117778_SNP [dm6]	C	T	7.438e^-6	0.038	INTRON Ets65A
2R	12850308	2R_12850308_SNP [dm3] 2R_16962803_SNP [dm6]	C	T	7.543e^-6	0.038	INTERGENIC
3R	18989858	3R_18989858_SNP [dm3] 3R_23164136_SNP [dm6]	T	A	7.546e^-6	0.038	INTERGENIC
3L	2877142	3L_2877142_SNP [dm3] 3L_2877142_SNP [dm6]	A	G	7.598e^-6	0.039	INTRON CG43444
2R	18818427	2R_18818427_SNP [dm3] 2R_22930904_SNP [dm6]	G	A	7.678e^-6	0.039	SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
2R	18818433	2R_18818433_SNP [dm3] 2R_22930910_SNP [dm6]	C	G	7.678e^-6	0.039	SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
X	14910118	X_14910118_SNP [dm3] X_15016085_SNP [dm6]	A	G	7.678e^-6	0.039	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11354990	2L_11354990_SNP [dm3] 2L_11354990_SNP [dm6]	C	A	7.747e^-6	0.039	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
X	5367419	X_5367419_SNP [dm3] X_5473386_SNP [dm6]	T	C	7.750e^-6	0.039	INTRON SPR
2L	3040546	2L_3040546_SNP [dm3] 2L_3040546_SNP [dm6]	G	A	7.758e^-6	0.039	NON_SYNONYMOUS_CODING CG17221 UPSTREAM cnir	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19022661	3R_19022661_SNP [dm3] 3R_23196939_SNP [dm6]	T	C	7.786e^-6	0.039	INTRON cnc
3R	19022684	3R_19022684_SNP [dm3] 3R_23196962_SNP [dm6]	A	C	7.786e^-6	0.039	INTRON cnc
3R	4291189	3R_4291189_SNP [dm3] 3R_8465467_SNP [dm6]	A	G	7.804e^-6	0.039	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16175917	3R_16175917_SNP [dm3] 3R_20350195_SNP [dm6]	A	G	7.985e^-6	0.039	INTERGENIC
3R	26179011	3R_26179011_SNP [dm3] 3R_30353289_SNP [dm6]	A	T	8.048e^-6	0.04	INTRON hdc
3R	13857098	3R_13857098_SNP [dm3] 3R_18031376_SNP [dm6]	C	T	8.131e^-6	0.04	INTERGENIC
3R	6993432	3R_6993432_SNP [dm3] 3R_11167710_SNP [dm6]	C	T	8.131e^-6	0.04	SPLICE_SITE_DONOR Ugt86De DOWNSTREAM Ugt35b INTRON Ugt86De
3L	4078236	3L_4078236_SNP [dm3] 3L_4078236_SNP [dm6]	A	G	8.197e^-6	0.04	INTRON Gad1
X	13985720	X_13985720_SNP [dm3] X_14091687_SNP [dm6]	A	T	8.281e^-6	0.04	INTERGENIC
X	2152715	X_2152715_SNP [dm3] X_2258682_SNP [dm6]	C	G	8.281e^-6	0.04	UTR_5_PRIME CG3078	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5708070	X_5708070_DEL [dm3] X_5814037_DEL [dm6]	AGCCACCCAGCA...	A	8.295e^-6	0.04	DOWNSTREAM CG15766 INTERGENIC
3R	25156657	3R_25156657_SNP [dm3] 3R_29330935_SNP [dm6]	A	T	8.425e^-6	0.041	INTERGENIC
3L	7232349	3L_7232349_SNP [dm3] 3L_7239249_SNP [dm6]	G	A	8.595e^-6	0.042	SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18989656	3R_18989656_SNP [dm3] 3R_23163934_SNP [dm6]	A	G	8.680e^-6	0.042	INTERGENIC
X	9076549	X_9076549_SNP [dm3] X_9182516_SNP [dm6]	A	C	8.793e^-6	0.042	UTR_3_PRIME mei-P26
3L	11463769	3L_11463769_SNP [dm3] 3L_11470669_SNP [dm6]	C	T	8.817e^-6	0.042	INTERGENIC
3R	19022641	3R_19022641_SNP [dm3] 3R_23196919_SNP [dm6]	C	G	8.868e^-6	0.042	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19022645	3R_19022645_DEL [dm3] 3R_23196923_DEL [dm6]	AAAT	A	8.868e^-6	0.042	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19022650	3R_19022650_SNP [dm3] 3R_23196928_SNP [dm6]	G	T	8.868e^-6	0.042	INTRON cnc
3R	19022773	3R_19022773_SNP [dm3] 3R_23197051_SNP [dm6]	A	C	8.868e^-6	0.042	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	1772294	X_1772294_SNP [dm3] X_1878261_SNP [dm6]	C	T	8.880e^-6	0.042	NON_SYNONYMOUS_CODING CG14805 UPSTREAM CG14817 DOWNSTREAM CG14818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8907387	3L_8907387_SNP [dm3] 3L_8914287_SNP [dm6]	A	C	8.903e^-6	0.042	UPSTREAM CR43970 INTRON Tsp66E	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8034973	3R_8034973_SNP [dm3] 3R_12209251_SNP [dm6]	C	T	8.938e^-6	0.042	SYNONYMOUS_CODING CG4830
X	8914105	X_8914105_SNP [dm3] X_9020072_SNP [dm6]	T	A	8.938e^-6	0.042	INTRON CR43836 & 1 other
X	14917742	X_14917742_SNP [dm3] X_15023709_SNP [dm6]	A	G	9.002e^-6	0.042	UPSTREAM be INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12886399	X_12886399_SNP [dm3] X_12992366_SNP [dm6]	C	T	9.098e^-6	0.042	INTRON rad
2R	11637768	2R_11637768_SNP [dm3] 2R_15750263_SNP [dm6]	C	T	9.106e^-6	0.042	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11640391	2R_11640391_SNP [dm3] 2R_15752886_SNP [dm6]	A	C	9.106e^-6	0.042	INTRON CG30089
2L	11669088	2L_11669088_SNP [dm3] 2L_11669088_SNP [dm6]	G	T	9.236e^-6	0.042	INTERGENIC
2L	11669193	2L_11669193_SNP [dm3] 2L_11669193_SNP [dm6]	T	C	9.236e^-6	0.042	INTERGENIC
2L	11669220	2L_11669220_SNP [dm3] 2L_11669220_SNP [dm6]	A	G	9.236e^-6	0.042	INTERGENIC
X	15456466	X_15456466_SNP [dm3] X_15562433_SNP [dm6]	C	T	9.236e^-6	0.042	INTERGENIC
X	17404785	X_17404785_SNP [dm3] X_17510752_SNP [dm6]	A	T	9.236e^-6	0.042	INTRON CG43658
3L	938582	3L_938582_SNP [dm3] 3L_938582_SNP [dm6]	T	A	9.278e^-6	0.042	INTRON Glut1
3R	22515912	3R_22515912_SNP [dm3] 3R_26690190_SNP [dm6]	T	G	9.279e^-6	0.042	INTERGENIC
3R	22515925	3R_22515925_SNP [dm3] 3R_26690203_SNP [dm6]	C	T	9.279e^-6	0.042	INTERGENIC
3R	22515933	3R_22515933_SNP [dm3] 3R_26690211_SNP [dm6]	T	A	9.279e^-6	0.042	INTERGENIC
3L	10948560	3L_10948560_SNP [dm3] 3L_10955460_SNP [dm6]	T	A	9.288e^-6	0.042	INTERGENIC
2R	10381107	2R_10381107_SNP [dm3] 2R_14493602_SNP [dm6]	C	T	9.304e^-6	0.042	INTRON L	TF binding site mE1_TFBS_cad
3L	2993811	3L_2993811_SNP [dm3] 3L_2993811_SNP [dm6]	C	G	9.516e^-6	0.042	INTERGENIC
2L	19123274	2L_19123274_SNP [dm3] 2L_19123274_SNP [dm6]	T	G	9.569e^-6	0.042	SYNONYMOUS_CODING l_2_37Cc DOWNSTREAM l_2_37Cb
3L	11638237	3L_11638237_SNP [dm3] 3L_11645137_SNP [dm6]	C	G	9.618e^-6	0.042	NON_SYNONYMOUS_CODING CG6071
3L	12091957	3L_12091957_SNP [dm3] 3L_12098857_SNP [dm6]	G	A	9.618e^-6	0.042	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26073865	3R_26073865_SNP [dm3] 3R_30248143_SNP [dm6]	A	C	9.618e^-6	0.042	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26550064	3R_26550064_SNP [dm3] 3R_30724342_SNP [dm6]	G	T	9.618e^-6	0.042	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9784570	X_9784570_SNP [dm3] X_9890537_SNP [dm6]	G	A	9.618e^-6	0.042	INTRON CG15249
X	9784837	X_9784837_SNP [dm3] X_9890804_SNP [dm6]	G	A	9.618e^-6	0.042	INTRON CG15249
X	9784984	X_9784984_SNP [dm3] X_9890951_SNP [dm6]	A	G	9.618e^-6	0.042	INTRON CG15249
3R	20122011	3R_20122011_SNP [dm3] 3R_24296289_SNP [dm6]	G	T	9.626e^-6	0.042	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16019289	3R_16019289_SNP [dm3] 3R_20193567_SNP [dm6]	A	C	9.876e^-6	0.043	INTERGENIC
3L	8873808	3L_8873808_SNP [dm3] 3L_8880708_SNP [dm6]	T	A	9.943e^-6	0.044	INTRON dally
3R	16792723	3R_16792723_SNP [dm3] 3R_20967001_SNP [dm6]	A	C	9.966e^-6	0.044	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25498867	3R_25498867_SNP [dm3] 3R_29673145_SNP [dm6]	G	T	9.998e^-6	0.044	NON_SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a & 1 other
2R	13725391	2R_13725391_SNP [dm3] 2R_17837886_SNP [dm6]	C	T	1.000e^-5	0.044	INTRON grh	TF binding site BDTNP1_TFBS_da
2R	11638210	2R_11638210_INS [dm3] 2R_15750705_INS [dm6]	G	GCAGCAACAG	1.010e^-5	0.044	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18989663	3R_18989663_SNP [dm3] 3R_23163941_SNP [dm6]	G	A	1.012e^-5	0.044	INTERGENIC
X	1749302	X_1749302_SNP [dm3] X_1855269_SNP [dm6]	G	C	1.029e^-5	0.045	INTERGENIC
2R	18608105	2R_18608105_SNP [dm3] 2R_22720600_SNP [dm6]	G	A	1.048e^-5	0.045	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18156246	2R_18156246_SNP [dm3] 2R_22268741_SNP [dm6]	A	G	1.058e^-5	0.045	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16130004	X_16130004_SNP [dm3] X_16235971_SNP [dm6]	G	C	1.061e^-5	0.045	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	13589178	2R_13589178_SNP [dm3] 2R_17701673_SNP [dm6]	C	T	1.074e^-5	0.045	UPSTREAM snoRNA:snR38:54Eb & 4 others DOWNSTREAM snoRNA:U76:54Eb & 3 others INTRON Uhg1
3R	3291560	3R_3291560_SNP [dm3] 3R_7465838_SNP [dm6]	T	A	1.076e^-5	0.045	INTERGENIC
2R	11614737	2R_11614737_SNP [dm3] 2R_15727232_SNP [dm6]	A	G	1.079e^-5	0.045	UPSTREAM CG30089 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	7728800	2R_7728800_SNP [dm3] 2R_11841295_SNP [dm6]	G	A	1.079e^-5	0.045	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
3L	19427704	3L_19427704_SNP [dm3] 3L_19434604_SNP [dm6]	T	C	1.079e^-5	0.045	INTERGENIC
3L	6966838	3L_6966838_SNP [dm3] 3L_6973738_SNP [dm6]	A	G	1.079e^-5	0.045	SYNONYMOUS_CODING Galphai	TF binding site mE1_TFBS_sens
3R	10059193	3R_10059193_SNP [dm3] 3R_14233471_SNP [dm6]	T	A	1.079e^-5	0.045	INTERGENIC
3R	10787079	3R_10787079_SNP [dm3] 3R_14961357_SNP [dm6]	A	T	1.079e^-5	0.045	INTERGENIC
3R	10797628	3R_10797628_DEL [dm3] 3R_14971906_DEL [dm6]	TTCACTATAAATAAGAAGAA...	T	1.079e^-5	0.045	INTERGENIC
3R	10797652	3R_10797652_DEL [dm3] 3R_14971930_DEL [dm6]	AG	A	1.079e^-5	0.045	INTERGENIC
3R	14359115	3R_14359115_SNP [dm3] 3R_18533393_SNP [dm6]	G	A	1.079e^-5	0.045	INTRON fru
X	12214706	X_12214706_SNP [dm3] X_12320673_SNP [dm6]	G	C	1.079e^-5	0.045	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12562087	X_12562087_SNP [dm3] X_12668054_SNP [dm6]	C	T	1.079e^-5	0.045	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12562313	X_12562313_SNP [dm3] X_12668280_SNP [dm6]	G	C	1.079e^-5	0.045	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12562656	X_12562656_SNP [dm3] X_12668623_SNP [dm6]	C	T	1.079e^-5	0.045	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19422566	X_19422566_SNP [dm3] X_19528533_SNP [dm6]	A	C	1.079e^-5	0.045	INTRON CoRest
3L	3993354	3L_3993354_SNP [dm3] 3L_3993354_SNP [dm6]	T	A	1.081e^-5	0.045	UTR_3_PRIME scrt
3L	8774552	3L_8774552_SNP [dm3] 3L_8781452_SNP [dm6]	G	A	1.083e^-5	0.045	INTRON Fhos
3L	18439282	3L_18439282_SNP [dm3] 3L_18446182_SNP [dm6]	T	G	1.084e^-5	0.045	INTERGENIC
2R	16788230	2R_16788230_SNP [dm3] 2R_20900725_SNP [dm6]	G	A	1.086e^-5	0.045	INTRON otp
X	1655903	X_1655903_SNP [dm3] X_1761870_SNP [dm6]	C	T	1.091e^-5	0.045	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11473581	3R_11473581_SNP [dm3] 3R_15647859_SNP [dm6]	C	A	1.109e^-5	0.045	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20001138	3R_20001138_SNP [dm3] 3R_24175416_SNP [dm6]	T	A	1.111e^-5	0.045	INTRON CG13606
2L	9252374	2L_9252374_SNP [dm3] 2L_9252374_SNP [dm6]	A	G	1.115e^-5	0.045	UPSTREAM CR43734 INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10740421	2R_10740421_SNP [dm3] 2R_14852916_SNP [dm6]	A	G	1.117e^-5	0.045	UPSTREAM Ercc1 & 1 other DOWNSTREAM Ciao1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	19501260	X_19501260_SNP [dm3] X_19607227_SNP [dm6]	T	C	1.125e^-5	0.046	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	16175939	3R_16175939_SNP [dm3] 3R_20350217_SNP [dm6]	A	C	1.130e^-5	0.046	INTERGENIC
3L	13049892	3L_13049892_SNP [dm3] 3L_13056792_SNP [dm6]	G	T	1.138e^-5	0.046	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25344618	3R_25344618_SNP [dm3] 3R_29518896_SNP [dm6]	C	G	1.143e^-5	0.046	INTERGENIC
3L	6255877	3L_6255877_SNP [dm3] 3L_6262777_SNP [dm6]	T	C	1.156e^-5	0.046	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25528835	3R_25528835_SNP [dm3] 3R_29703113_SNP [dm6]	A	G	1.162e^-5	0.047	INTERGENIC
X	13985673	X_13985673_SNP [dm3] X_14091640_SNP [dm6]	A	T	1.169e^-5	0.047	INTERGENIC
2R	8904201	2R_8904201_SNP [dm3] 2R_13016696_SNP [dm6]	G	A	1.173e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8904277	2R_8904277_SNP [dm3] 2R_13016772_SNP [dm6]	A	G	1.175e^-5	0.047	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19027160	3R_19027160_SNP [dm3] 3R_23201438_SNP [dm6]	C	G	1.176e^-5	0.047	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	15480921	2R_15480921_SNP [dm3] 2R_19593416_SNP [dm6]	C	A	1.176e^-5	0.047	UPSTREAM CG16716 INTRON sm
3L	1133875	3L_1133875_SNP [dm3] 3L_1133875_SNP [dm6]	C	T	1.176e^-5	0.047	INTERGENIC	regulatory region REDfly_CRMs
3R	18417018	3R_18417018_SNP [dm3] 3R_22591296_SNP [dm6]	T	C	1.183e^-5	0.047	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4699372	2R_4699372_SNP [dm3] 2R_8811867_SNP [dm6]	A	G	1.197e^-5	0.047	INTRON sns	TF binding site mE1_TFBS_cad
2R	10190736	2R_10190736_SNP [dm3] 2R_14303231_SNP [dm6]	C	A	1.232e^-5	0.048	UPSTREAM tej INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2135194	2R_2135194_SNP [dm3] 2R_6247689_SNP [dm6]	A	C	1.233e^-5	0.048	INTRON Pld
X	17671377	X_17671377_SNP [dm3] X_17777344_SNP [dm6]	T	A	1.261e^-5	0.049	SYNONYMOUS_CODING unc-4 UTR_3_PRIME unc-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15674560	3L_15674560_SNP [dm3] 3L_15681460_SNP [dm6]	T	C	1.267e^-5	0.049	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3L	15674561	3L_15674561_SNP [dm3] 3L_15681461_SNP [dm6]	A	T	1.267e^-5	0.049	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3L	15674564	3L_15674564_SNP [dm3] 3L_15681464_SNP [dm6]	G	A	1.267e^-5	0.049	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3L	15674576	3L_15674576_SNP [dm3] 3L_15681476_SNP [dm6]	A	T	1.267e^-5	0.049	DOWNSTREAM CG7579 & 1 other INTERGENIC
3L	15674735	3L_15674735_SNP [dm3] 3L_15681635_SNP [dm6]	T	A	1.267e^-5	0.049	UTR_3_PRIME CG7579 DOWNSTREAM CG7304
2R	13588898	2R_13588898_SNP [dm3] 2R_17701393_SNP [dm6]	G	C	1.270e^-5	0.049	UPSTREAM snoRNA:Me28S-G3277a & 3 others DOWNSTREAM snoRNA:U29:54Ec & 3 others EXON Uhg1
2R	13588911	2R_13588911_SNP [dm3] 2R_17701406_SNP [dm6]	T	C	1.270e^-5	0.049	UPSTREAM snoRNA:Me28S-G3277a & 3 others DOWNSTREAM snoRNA:U29:54Ec & 3 others EXON Uhg1
2L	630825	2L_630825_SNP [dm3] 2L_630825_SNP [dm6]	C	G	1.270e^-5	0.049	INTERGENIC
X	4268176	X_4268176_DEL [dm3] X_4374143_DEL [dm6]	TTTGGACAAGT...	T	1.270e^-5	0.049	UPSTREAM CR43614 INTERGENIC
X	4268206	X_4268206_SNP [dm3] X_4374173_SNP [dm6]	A	C	1.270e^-5	0.049	UPSTREAM CR43614 INTERGENIC
2R	16528353	2R_16528353_SNP [dm3] 2R_20640848_SNP [dm6]	C	A	1.271e^-5	0.049	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	5686819	3L_5686819_SNP [dm3] 3L_5693719_SNP [dm6]	C	T	1.288e^-5	0.049	INTRON sif
X	7937792	X_7937792_SNP [dm3] X_8043759_SNP [dm6]	G	A	1.288e^-5	0.049	INTRON fs_1_h	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2879040	3L_2879040_SNP [dm3] 3L_2879040_SNP [dm6]	A	T	1.292e^-5	0.049	UTR_5_PRIME CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_sens
2R	13740959	2R_13740959_SNP [dm3] 2R_17853454_SNP [dm6]	T	C	1.307e^-5	0.049	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2R	17110835	2R_17110835_SNP [dm3] 2R_21223330_SNP [dm6]	G	C	1.307e^-5	0.049	INTRON ASPP
3L	2881786	3L_2881786_SNP [dm3] 3L_2881786_SNP [dm6]	T	A	1.307e^-5	0.049	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3596412	3L_3596412_SNP [dm3] 3L_3596412_SNP [dm6]	T	A	1.307e^-5	0.049	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8685872	3L_8685872_SNP [dm3] 3L_8692772_SNP [dm6]	G	T	1.307e^-5	0.049	EXON CR44526	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15239741	3R_15239741_SNP [dm3] 3R_19414019_SNP [dm6]	A	G	1.307e^-5	0.049	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17451630	3R_17451630_SNP [dm3] 3R_21625908_SNP [dm6]	A	T	1.307e^-5	0.049	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17451719	3R_17451719_SNP [dm3] 3R_21625997_SNP [dm6]	T	A	1.307e^-5	0.049	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17451721	3R_17451721_SNP [dm3] 3R_21625999_SNP [dm6]	T	A	1.307e^-5	0.049	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20724529	3R_20724529_SNP [dm3] 3R_24898807_SNP [dm6]	T	C	1.322e^-5	0.049	NON_SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3626939	3R_3626939_SNP [dm3] 3R_7801217_SNP [dm6]	T	G	1.339e^-5	0.05	SYNONYMOUS_CODING CG3014	TF binding site mE1_TFBS_chinmo
X	21205388	X_21205388_SNP [dm3] X_21334361_SNP [dm6]	A	T	1.339e^-5	0.05	INTRON tty	TF binding site mE1_TFBS_cad
2R	13588897	2R_13588897_SNP [dm3] 2R_17701392_SNP [dm6]	T	C	1.349e^-5	0.05	UPSTREAM snoRNA:Me28S-G3277a & 3 others DOWNSTREAM snoRNA:U29:54Ec & 3 others EXON Uhg1
3L	18439271	3L_18439271_SNP [dm3] 3L_18446171_SNP [dm6]	C	T	1.351e^-5	0.05	INTERGENIC
2R	8143747	2R_8143747_SNP [dm3] 2R_12256242_SNP [dm6]	T	A	1.353e^-5	0.05	DOWNSTREAM CG13168 INTERGENIC
3R	15823178	3R_15823178_SNP [dm3] 3R_19997456_SNP [dm6]	T	C	1.359e^-5	0.05	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25499133	3R_25499133_SNP [dm3] 3R_29673411_SNP [dm6]	T	C	1.362e^-5	0.05	SYNONYMOUS_CODING ppk19 DOWNSTREAM Bub3
3R	25499197	3R_25499197_SNP [dm3] 3R_29673475_SNP [dm6]	A	C	1.362e^-5	0.05	SYNONYMOUS_CODING ppk19 DOWNSTREAM Bub3
3R	20816631	3R_20816631_SNP [dm3] 3R_24990909_SNP [dm6]	C	T	1.365e^-5	0.05	INTRON tnc
X	13985694	X_13985694_SNP [dm3] X_14091661_SNP [dm6]	T	A	1.369e^-5	0.05	INTERGENIC
X	2214368	X_2214368_SNP [dm3] X_2320335_SNP [dm6]	T	C	1.378e^-5	0.05	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23061786	3R_23061786_SNP [dm3] 3R_27236064_SNP [dm6]	A	G	1.380e^-5	0.05	SYNONYMOUS_CODING CG31068 INTRON CG31064
3R	23061794	3R_23061794_SNP [dm3] 3R_27236072_SNP [dm6]	T	A	1.380e^-5	0.05	NON_SYNONYMOUS_CODING CG31068 INTRON CG31064
2R	6346017	2R_6346017_SNP [dm3] 2R_10458512_SNP [dm6]	G	T	1.386e^-5	0.05	UTR_5_PRIME Cyp49a1 UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
2R	6348144	2R_6348144_SNP [dm3] 2R_10460639_SNP [dm6]	G	A	1.386e^-5	0.05	INTRON Galphao	TF binding site mE1_TFBS_HSA
2R	6348157	2R_6348157_SNP [dm3] 2R_10460652_SNP [dm6]	G	A	1.386e^-5	0.05	INTRON Galphao	TF binding site mE1_TFBS_HSA
2R	6348167	2R_6348167_MNP [dm3] 2R_10460662_MNP [dm6]	CAT	TTA	1.386e^-5	0.05	INTRON Galphao	TF binding site mE1_TFBS_HSA
2R	6348172	2R_6348172_SNP [dm3] 2R_10460667_SNP [dm6]	C	T	1.386e^-5	0.05	INTRON Galphao	TF binding site mE1_TFBS_HSA
3L	6329041	3L_6329041_SNP [dm3] 3L_6335941_SNP [dm6]	C	T	1.386e^-5	0.05	INTRON CG13300	TF binding site mE1_TFBS_inv
3L	17124471	3L_17124471_SNP [dm3] 3L_17131371_SNP [dm6]	A	G	1.439e^-5	0.051	INTRON Rbp6
3R	10228942	3R_10228942_INS [dm3] 3R_14403220_INS [dm6]	G	GCTTTCAG	1.440e^-5	0.051	INTRON cv-c
2R	18797799	2R_18797799_SNP [dm3] 2R_22910276_SNP [dm6]	C	T	1.452e^-5	0.052	INTRON nahoda
3R	26073866	3R_26073866_SNP [dm3] 3R_30248144_SNP [dm6]	A	T	1.452e^-5	0.052	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13985793	X_13985793_SNP [dm3] X_14091760_SNP [dm6]	C	T	1.488e^-5	0.053	INTERGENIC
3R	24613888	3R_24613888_SNP [dm3] 3R_28788166_SNP [dm6]	A	T	1.506e^-5	0.053	INTERGENIC
2L	19939030	2L_19939030_SNP [dm3] 2L_19939030_SNP [dm6]	T	A	1.514e^-5	0.053	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13024936	2R_13024936_SNP [dm3] 2R_17137431_SNP [dm6]	A	T	1.520e^-5	0.053	DOWNSTREAM Gbp INTRON CG11395
3R	10797649	3R_10797649_SNP [dm3] 3R_14971927_SNP [dm6]	T	G	1.521e^-5	0.053	INTERGENIC
X	17406826	X_17406826_INS [dm3] X_17512793_INS [dm6]	A	AA	1.524e^-5	0.053	INTRON CG43658
2R	8904382	2R_8904382_SNP [dm3] 2R_13016877_SNP [dm6]	G	C	1.527e^-5	0.053	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14409576	2L_14409576_SNP [dm3] 2L_14409576_SNP [dm6]	G	A	1.531e^-5	0.053	UPSTREAM CR44733 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15474493	2L_15474493_SNP [dm3] 2L_15474493_SNP [dm6]	G	A	1.531e^-5	0.053	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20816544	3R_20816544_SNP [dm3] 3R_24990822_SNP [dm6]	G	A	1.544e^-5	0.053	INTRON tnc
3R	16167782	3R_16167782_SNP [dm3] 3R_20342060_SNP [dm6]	C	G	1.546e^-5	0.053	NON_SYNONYMOUS_CODING Ir92a
2R	13642570	2R_13642570_SNP [dm3] 2R_17755065_SNP [dm6]	G	A	1.567e^-5	0.053	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10601264	2L_10601264_SNP [dm3] 2L_10601264_SNP [dm6]	T	C	1.575e^-5	0.053	INTRON Trim9
2L	13889147	2L_13889147_SNP [dm3] 2L_13889147_SNP [dm6]	C	T	1.575e^-5	0.053	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14314748	2L_14314748_SNP [dm3] 2L_14314748_SNP [dm6]	C	T	1.575e^-5	0.053	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14324426	2L_14324426_SNP [dm3] 2L_14324426_SNP [dm6]	A	G	1.575e^-5	0.053	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	14324495	2L_14324495_SNP [dm3] 2L_14324495_SNP [dm6]	G	C	1.575e^-5	0.053	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	14334126	2L_14334126_SNP [dm3] 2L_14334126_SNP [dm6]	G	A	1.575e^-5	0.053	UPSTREAM CG33090 DOWNSTREAM ms_2_34Fe INTERGENIC
2L	15735015	2L_15735015_SNP [dm3] 2L_15735015_SNP [dm6]	T	C	1.575e^-5	0.053	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3520584	2L_3520584_SNP [dm3] 2L_3520584_SNP [dm6]	G	T	1.575e^-5	0.053	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2L	4631962	2L_4631962_SNP [dm3] 2L_4631962_SNP [dm6]	T	A	1.575e^-5	0.053	INTERGENIC
2L	5653846	2L_5653846_SNP [dm3] 2L_5653846_SNP [dm6]	T	G	1.575e^-5	0.053	INTRON CG31646
2L	6040721	2L_6040721_SNP [dm3] 2L_6040721_SNP [dm6]	G	A	1.575e^-5	0.053	SYNONYMOUS_CODING CG31643 DOWNSTREAM ade2
2L	6947677	2L_6947677_SNP [dm3] 2L_6947677_SNP [dm6]	T	G	1.575e^-5	0.053	NON_SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2882516	3L_2882516_SNP [dm3] 3L_2882516_SNP [dm6]	C	T	1.575e^-5	0.053	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	25338202	3R_25338202_SNP [dm3] 3R_29512480_SNP [dm6]	C	T	1.575e^-5	0.053	INTERGENIC
3R	26071613	3R_26071613_SNP [dm3] 3R_30245891_SNP [dm6]	C	T	1.575e^-5	0.053	NON_SYNONYMOUS_CODING CG9733
X	3731756	X_3731756_DEL [dm3] X_3837723_DEL [dm6]	TGTTAG	T	1.575e^-5	0.053	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	3732238	X_3732238_DEL [dm3] X_3838205_DEL [dm6]	GTATTCG	G	1.575e^-5	0.053	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6348004	X_6348004_INS [dm3] X_6453971_INS [dm6]	T	TT	1.575e^-5	0.053	INTRON CG42340
2R	9704549	2R_9704549_SNP [dm3] 2R_13817044_SNP [dm6]	A	T	1.591e^-5	0.053	INTRON stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14359221	3R_14359221_SNP [dm3] 3R_18533499_SNP [dm6]	C	T	1.616e^-5	0.054	INTRON fru
3R	17753112	3R_17753112_SNP [dm3] 3R_21927390_SNP [dm6]	G	A	1.616e^-5	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	15674566	3L_15674566_SNP [dm3] 3L_15681466_SNP [dm6]	T	C	1.627e^-5	0.054	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2L	18943560	2L_18943560_SNP [dm3] 2L_18943560_SNP [dm6]	G	T	1.637e^-5	0.054	UTR_5_PRIME ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1041811	2R_1041811_SNP [dm3] 2R_5154306_SNP [dm6]	C	T	1.637e^-5	0.054	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
2R	13022147	2R_13022147_SNP [dm3] 2R_17134642_SNP [dm6]	A	C	1.637e^-5	0.054	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
3L	12642011	3L_12642011_SNP [dm3] 3L_12648911_SNP [dm6]	C	A	1.637e^-5	0.054	DOWNSTREAM CR32111 EXON CR43431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	27623450	3R_27623450_SNP [dm3] 3R_31797728_SNP [dm6]	C	T	1.637e^-5	0.054	SYNONYMOUS_CODING Acf1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14910154	X_14910154_SNP [dm3] X_15016121_SNP [dm6]	C	T	1.650e^-5	0.054	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	7079516	X_7079516_SNP [dm3] X_7185483_SNP [dm6]	G	A	1.650e^-5	0.054	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10865502	X_10865502_SNP [dm3] X_10971469_SNP [dm6]	A	T	1.660e^-5	0.055	INTRON CG42339
3R	16829518	3R_16829518_SNP [dm3] 3R_21003796_SNP [dm6]	C	T	1.698e^-5	0.056	INTRON Calx
2L	10774337	2L_10774337_SNP [dm3] 2L_10774337_SNP [dm6]	T	C	1.698e^-5	0.056	SYNONYMOUS_CODING CG31869	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	11077994	2L_11077994_INS [dm3] 2L_11077994_INS [dm6]	G	GG	1.704e^-5	0.056	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	9406366	2R_9406366_SNP [dm3] 2R_13518861_SNP [dm6]	G	T	1.711e^-5	0.056	SPLICE_SITE_REGION Vmat INTRON Vmat	TF binding site mE1_TFBS_cad
3R	9625206	3R_9625206_SNP [dm3] 3R_13799484_SNP [dm6]	A	C	1.735e^-5	0.057	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11638235	2R_11638235_SNP [dm3] 2R_15750730_SNP [dm6]	C	A	1.735e^-5	0.057	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11302128	2L_11302128_SNP [dm3] 2L_11302128_SNP [dm6]	G	T	1.749e^-5	0.057	INTERGENIC
2L	2597645	2L_2597645_SNP [dm3] 2L_2597645_SNP [dm6]	T	A	1.755e^-5	0.057	DOWNSTREAM CR44790 INTERGENIC
2L	11357379	2L_11357379_SNP [dm3] 2L_11357379_SNP [dm6]	T	G	1.779e^-5	0.058	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	16788241	2R_16788241_SNP [dm3] 2R_20900736_SNP [dm6]	T	A	1.790e^-5	0.058	INTRON otp
3R	20814192	3R_20814192_DEL [dm3] 3R_24988470_DEL [dm6]	AA	A	1.791e^-5	0.058	INTRON tnc
2L	8139260	2L_8139260_SNP [dm3] 2L_8139260_SNP [dm6]	A	C	1.792e^-5	0.058	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	2962809	3R_2962809_SNP [dm3] 3R_7137087_SNP [dm6]	G	A	1.797e^-5	0.058	UTR_5_PRIME Fer1
X	16810030	X_16810030_SNP [dm3] X_16915997_SNP [dm6]	G	A	1.797e^-5	0.058	INTRON CG4928
3R	14758294	3R_14758294_SNP [dm3] 3R_18932572_SNP [dm6]	G	A	1.807e^-5	0.058	INTRON CG42613
3R	15506525	3R_15506525_SNP [dm3] 3R_19680803_SNP [dm6]	C	T	1.807e^-5	0.058	INTRON Naam
3L	1805266	3L_1805266_SNP [dm3] 3L_1805266_SNP [dm6]	A	G	1.828e^-5	0.058	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
2R	13363659	2R_13363659_SNP [dm3] 2R_17476154_SNP [dm6]	G	A	1.831e^-5	0.058	UTR_5_PRIME CG6520 UPSTREAM CG6520	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2R	13589064	2R_13589064_SNP [dm3] 2R_17701559_SNP [dm6]	T	A	1.845e^-5	0.059	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	13589905	2R_13589905_DEL [dm3] 2R_17702400_DEL [dm6]	TACAT	T	1.845e^-5	0.059	UPSTREAM snoRNA:U31:54Ed & 3 others DOWNSTREAM snoRNA:Me28S-G3277a & 4 others INTRON Uhg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25499190	3R_25499190_SNP [dm3] 3R_29673468_SNP [dm6]	C	A	1.850e^-5	0.059	SYNONYMOUS_CODING ppk19 DOWNSTREAM Bub3
2R	16203724	2R_16203724_SNP [dm3] 2R_20316219_SNP [dm6]	C	T	1.864e^-5	0.059	DOWNSTREAM CR44642 INTRON CG13868	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22025255	3R_22025255_SNP [dm3] 3R_26199533_SNP [dm6]	G	A	1.896e^-5	0.06	INTRON CR44320
2R	8139152	2R_8139152_DEL [dm3] 2R_12251647_DEL [dm6]	CGAGAACTGGGCTGGGTGCC...	C	1.906e^-5	0.06	INTERGENIC
2R	8140268	2R_8140268_SNP [dm3] 2R_12252763_SNP [dm6]	G	A	1.906e^-5	0.06	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8143442	2R_8143442_SNP [dm3] 2R_12255937_SNP [dm6]	T	A	1.906e^-5	0.06	DOWNSTREAM CG13168 INTERGENIC
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	1.937e^-5	0.061	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8175069	2R_8175069_SNP [dm3] 2R_12287564_SNP [dm6]	C	T	1.945e^-5	0.061	INTRON CG42700
3R	26081336	3R_26081336_DEL [dm3] 3R_30255614_DEL [dm6]	TTTTTTGACGGACACT...	T	1.952e^-5	0.061	INTERGENIC
2R	18787518	2R_18787518_SNP [dm3] 2R_22899995_SNP [dm6]	G	A	2.008e^-5	0.063	INTRON nahoda
3R	25499222	3R_25499222_SNP [dm3] 3R_29673500_SNP [dm6]	T	A	2.033e^-5	0.063	SPLICE_SITE_REGION ppk19 DOWNSTREAM Bub3 INTRON ppk19
2R	18870289	2R_18870289_SNP [dm3] 2R_22982766_SNP [dm6]	T	C	2.038e^-5	0.063	NON_SYNONYMOUS_CODING CG32834
3L	7617130	3L_7617130_SNP [dm3] 3L_7624030_SNP [dm6]	C	T	2.038e^-5	0.063	INTRON CG33275
2R	7710411	2R_7710411_SNP [dm3] 2R_11822906_SNP [dm6]	G	A	2.040e^-5	0.063	INTERGENIC
2R	7710420	2R_7710420_SNP [dm3] 2R_11822915_SNP [dm6]	T	G	2.040e^-5	0.063	INTERGENIC
2R	7710425	2R_7710425_SNP [dm3] 2R_11822920_SNP [dm6]	C	A	2.040e^-5	0.063	INTERGENIC
3R	8492357	3R_8492357_SNP [dm3] 3R_12666635_SNP [dm6]	C	G	2.057e^-5	0.064	UPSTREAM CG14395 INTRON CG14395
2L	5692448	2L_5692448_INS [dm3] 2L_5692448_INS [dm6]	T	TT	2.085e^-5	0.064	DOWNSTREAM CR44819 INTERGENIC
3L	1612198	3L_1612198_SNP [dm3] 3L_1612198_SNP [dm6]	T	A	2.102e^-5	0.065	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26086325	3R_26086325_DEL [dm3] 3R_30260603_DEL [dm6]	GG	G	2.113e^-5	0.065	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	8128532	3R_8128532_SNP [dm3] 3R_12302810_SNP [dm6]	T	G	2.117e^-5	0.065	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
X	2212197	X_2212197_SNP [dm3] X_2318164_SNP [dm6]	T	C	2.128e^-5	0.065	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21456170	3R_21456170_SNP [dm3] 3R_25630448_SNP [dm6]	G	C	2.134e^-5	0.065	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24064276	3R_24064276_SNP [dm3] 3R_28238554_SNP [dm6]	C	T	2.148e^-5	0.066	UTR_3_PRIME CG34354 EXON CR45041
3R	24064278	3R_24064278_SNP [dm3] 3R_28238556_SNP [dm6]	A	T	2.148e^-5	0.066	UTR_3_PRIME CG34354 EXON CR45041
3R	16541123	3R_16541123_SNP [dm3] 3R_20715401_SNP [dm6]	T	C	2.164e^-5	0.066	UPSTREAM Oamb INTERGENIC
3R	23072223	3R_23072223_SNP [dm3] 3R_27246501_SNP [dm6]	T	G	2.166e^-5	0.066	UTR_3_PRIME CG5984
3R	10042823	3R_10042823_SNP [dm3] 3R_14217101_SNP [dm6]	C	T	2.169e^-5	0.066	INTRON CG9649
X	7008128	X_7008128_SNP [dm3] X_7114095_SNP [dm6]	G	C	2.169e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6349010	2R_6349010_SNP [dm3] 2R_10461505_SNP [dm6]	C	T	2.170e^-5	0.066	INTRON Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3735893	2L_3735893_SNP [dm3] 2L_3735893_SNP [dm6]	T	G	2.195e^-5	0.066	INTRON CG10019
2L	11911224	2L_11911224_SNP [dm3] 2L_11911224_SNP [dm6]	G	T	2.197e^-5	0.066	INTRON Pde1c
2L	11911228	2L_11911228_SNP [dm3] 2L_11911228_SNP [dm6]	T	C	2.197e^-5	0.066	INTRON Pde1c
2R	18964226	2R_18964226_SNP [dm3] 2R_23076703_SNP [dm6]	T	A	2.197e^-5	0.066	UTR_3_PRIME CG3085 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15565437	X_15565437_SNP [dm3] X_15671404_SNP [dm6]	A	G	2.198e^-5	0.066	UPSTREAM CG15646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	20099625	3R_20099625_SNP [dm3] 3R_24273903_SNP [dm6]	A	G	2.199e^-5	0.066	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17760331	2R_17760331_INS [dm3] 2R_21872826_INS [dm6]	G	GGGAATATG	2.212e^-5	0.066	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	21205735	X_21205735_SNP [dm3] X_21334708_SNP [dm6]	T	A	2.213e^-5	0.066	INTRON tty
2R	6345808	2R_6345808_DEL [dm3] 2R_10458303_DEL [dm6]	TT	T	2.239e^-5	0.066	UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
2L	16366574	2L_16366574_SNP [dm3] 2L_16366574_SNP [dm6]	A	T	2.255e^-5	0.066	INTRON jhamt
2R	8902839	2R_8902839_SNP [dm3] 2R_13015334_SNP [dm6]	T	C	2.261e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4076734	2L_4076734_INS [dm3] 2L_4076734_INS [dm6]	T	TT	2.264e^-5	0.066	UPSTREAM CR44984 INTRON ed
2L	11686834	2L_11686834_SNP [dm3] 2L_11686834_SNP [dm6]	G	T	2.283e^-5	0.066	INTERGENIC
3L	17736124	3L_17736124_SNP [dm3] 3L_17743024_SNP [dm6]	A	T	2.283e^-5	0.066	DOWNSTREAM CG7460 INTRON Ccn
X	19371400	X_19371400_SNP [dm3] X_19477367_SNP [dm6]	G	C	2.298e^-5	0.066	INTRON CG32533	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12708940	2L_12708940_SNP [dm3] 2L_12708940_SNP [dm6]	C	A	2.306e^-5	0.066	UTR_3_PRIME CG5787 DOWNSTREAM CG6180
2L	14316976	2L_14316976_SNP [dm3] 2L_14316976_SNP [dm6]	G	T	2.308e^-5	0.066	INTRON wb
2L	14318766	2L_14318766_SNP [dm3] 2L_14318766_SNP [dm6]	G	A	2.308e^-5	0.066	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14318768	2L_14318768_SNP [dm3] 2L_14318768_SNP [dm6]	A	C	2.308e^-5	0.066	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14318782	2L_14318782_SNP [dm3] 2L_14318782_SNP [dm6]	T	G	2.308e^-5	0.066	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17908178	2L_17908178_SNP [dm3] 2L_17908178_SNP [dm6]	A	T	2.308e^-5	0.066	INTERGENIC
2L	17908350	2L_17908350_SNP [dm3] 2L_17908350_SNP [dm6]	G	A	2.308e^-5	0.066	INTERGENIC
2L	17911348	2L_17911348_SNP [dm3] 2L_17911348_SNP [dm6]	T	G	2.308e^-5	0.066	INTERGENIC
2L	17911721	2L_17911721_SNP [dm3] 2L_17911721_SNP [dm6]	C	T	2.308e^-5	0.066	INTERGENIC
2L	7840586	2L_7840586_SNP [dm3] 2L_7840586_SNP [dm6]	C	T	2.308e^-5	0.066	SYNONYMOUS_CODING CG14537 UPSTREAM CR43100	TF binding site mE1_TFBS_cad
2L	8302160	2L_8302160_SNP [dm3] 2L_8302160_SNP [dm6]	G	A	2.308e^-5	0.066	SYNONYMOUS_CODING wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	19545520	3L_19545520_SNP [dm3] 3L_19552420_SNP [dm6]	T	A	2.326e^-5	0.066	UTR_5_PRIME CG9300 UPSTREAM l_3_76BDr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	21230313	3R_21230313_SNP [dm3] 3R_25404591_SNP [dm6]	G	A	2.343e^-5	0.066	INTRON Fur1
X	5467453	X_5467453_INS [dm3] X_5573420_INS [dm6]	A	AAGCTCTA	2.350e^-5	0.066	INTERGENIC
3L	1022527	3L_1022527_INS [dm3] 3L_1022527_INS [dm6]	T	TT	2.350e^-5	0.066	INTRON trio
3R	25344619	3R_25344619_SNP [dm3] 3R_29518897_SNP [dm6]	G	T	2.359e^-5	0.066	INTERGENIC
3L	4175512	3L_4175512_SNP [dm3] 3L_4175512_SNP [dm6]	G	A	2.366e^-5	0.066	SYNONYMOUS_CODING Teh4 INTRON CG18675
3L	13052699	3L_13052699_SNP [dm3] 3L_13059599_SNP [dm6]	A	T	2.367e^-5	0.066	DOWNSTREAM CG14115 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7172763	2L_7172763_SNP [dm3] 2L_7172763_SNP [dm6]	T	A	2.369e^-5	0.066	INTERGENIC
2L	8950504	2L_8950504_SNP [dm3] 2L_8950504_SNP [dm6]	T	C	2.369e^-5	0.066	INTRON C1GalTA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9238438	2L_9238438_SNP [dm3] 2L_9238438_SNP [dm6]	T	A	2.369e^-5	0.066	INTRON tai	TF binding site mE1_TFBS_Trl
3L	18024778	3L_18024778_SNP [dm3] 3L_18031678_SNP [dm6]	T	A	2.371e^-5	0.066	INTRON Eip75B
3L	18024789	3L_18024789_SNP [dm3] 3L_18031689_SNP [dm6]	A	G	2.371e^-5	0.066	INTRON Eip75B
X	22058197	X_22058197_SNP [dm3] X_22656361_SNP [dm6]	C	G	2.371e^-5	0.066	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9650371	2R_9650371_SNP [dm3] 2R_13762866_SNP [dm6]	A	C	2.378e^-5	0.066	INTERGENIC
X	14910313	X_14910313_SNP [dm3] X_15016280_SNP [dm6]	A	C	2.381e^-5	0.066	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	19423109	X_19423109_SNP [dm3] X_19529076_SNP [dm6]	A	C	2.429e^-5	0.066	SYNONYMOUS_CODING CoRest	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4949659	3R_4949659_SNP [dm3] 3R_9123937_SNP [dm6]	G	T	2.435e^-5	0.066	INTRON pum
3R	21320158	3R_21320158_SNP [dm3] 3R_25494436_SNP [dm6]	A	G	2.437e^-5	0.066	INTRON CG33494
3R	17981259	3R_17981259_SNP [dm3] 3R_22155537_SNP [dm6]	A	T	2.448e^-5	0.066	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13619487	X_13619487_SNP [dm3] X_13725454_SNP [dm6]	C	T	2.448e^-5	0.066	NON_SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1078314	3L_1078314_DEL [dm3] 3L_1078314_DEL [dm6]	AA	A	2.453e^-5	0.066	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6027962	2L_6027962_INS [dm3] 2L_6027962_INS [dm6]	A	AA	2.455e^-5	0.066	INTRON CG9109
3L	16734743	3L_16734743_SNP [dm3] 3L_16741643_SNP [dm6]	G	A	2.495e^-5	0.066	INTERGENIC
2L	7571274	2L_7571274_SNP [dm3] 2L_7571274_SNP [dm6]	A	T	2.510e^-5	0.066	INTRON RapGAP1
2R	4655706	2R_4655706_SNP [dm3] 2R_8768201_SNP [dm6]	A	T	2.514e^-5	0.066	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19899244	2L_19899244_SNP [dm3] 2L_19899244_SNP [dm6]	C	T	2.527e^-5	0.066	INTRON sick
3R	6991664	3R_6991664_SNP [dm3] 3R_11165942_SNP [dm6]	A	T	2.528e^-5	0.066	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
X	4268151	X_4268151_SNP [dm3] X_4374118_SNP [dm6]	G	C	2.531e^-5	0.066	UPSTREAM CR43614 INTERGENIC
2R	17195525	2R_17195525_SNP [dm3] 2R_21308020_SNP [dm6]	A	G	2.533e^-5	0.066	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
2R	13863420	2R_13863420_SNP [dm3] 2R_17975915_SNP [dm6]	T	G	2.533e^-5	0.066	UTR_3_PRIME dpr13
2R	13863426	2R_13863426_SNP [dm3] 2R_17975921_SNP [dm6]	C	T	2.533e^-5	0.066	UTR_3_PRIME dpr13
2L	2808641	2L_2808641_SNP [dm3] 2L_2808641_SNP [dm6]	G	C	2.545e^-5	0.066	INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19745319	X_19745319_SNP [dm3] X_19851286_SNP [dm6]	T	A	2.576e^-5	0.066	UTR_5_PRIME pico UPSTREAM Nup205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14126094	3R_14126094_SNP [dm3] 3R_18300372_SNP [dm6]	C	T	2.576e^-5	0.066	UTR_3_PRIME CG18600 DOWNSTREAM Dlc90F
X	3779228	X_3779228_SNP [dm3] X_3885195_SNP [dm6]	A	T	2.601e^-5	0.066	INTRON CG15239
X	3779236	X_3779236_SNP [dm3] X_3885203_SNP [dm6]	T	A	2.601e^-5	0.066	INTRON CG15239
2R	8143438	2R_8143438_SNP [dm3] 2R_12255933_SNP [dm6]	T	A	2.609e^-5	0.066	DOWNSTREAM CG13168 INTERGENIC
2L	2252673	2L_2252673_SNP [dm3] 2L_2252673_SNP [dm6]	G	A	2.614e^-5	0.066	UPSTREAM CG17234 & 1 other INTERGENIC
2R	13589045	2R_13589045_SNP [dm3] 2R_17701540_SNP [dm6]	C	T	2.619e^-5	0.066	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	13589050	2R_13589050_SNP [dm3] 2R_17701545_SNP [dm6]	T	C	2.619e^-5	0.066	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	13589054	2R_13589054_SNP [dm3] 2R_17701549_SNP [dm6]	A	G	2.619e^-5	0.066	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	13589102	2R_13589102_SNP [dm3] 2R_17701597_SNP [dm6]	T	C	2.619e^-5	0.066	SPLICE_SITE_REGION Uhg1 UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
2R	13589848	2R_13589848_SNP [dm3] 2R_17702343_SNP [dm6]	G	C	2.619e^-5	0.066	UPSTREAM snoRNA:U31:54Ed & 3 others DOWNSTREAM snoRNA:Me28S-G3277a & 4 others EXON Uhg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7449583	2L_7449583_SNP [dm3] 2L_7449583_SNP [dm6]	G	T	2.624e^-5	0.066	UTR_5_PRIME santa-maria INTRON santa-maria
3L	13052695	3L_13052695_SNP [dm3] 3L_13059595_SNP [dm6]	G	T	2.633e^-5	0.066	DOWNSTREAM CG14115 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21201705	X_21201705_SNP [dm3] X_21330678_SNP [dm6]	A	G	2.639e^-5	0.066	UTR_3_PRIME tty DOWNSTREAM tty
2R	7768555	2R_7768555_SNP [dm3] 2R_11881050_SNP [dm6]	A	T	2.649e^-5	0.066	SYNONYMOUS_CODING CG13185
3R	7976085	3R_7976085_SNP [dm3] 3R_12150363_SNP [dm6]	C	T	2.652e^-5	0.066	INTRON dpr15
X	10019208	X_10019208_SNP [dm3] X_10125175_SNP [dm6]	A	C	2.663e^-5	0.066	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	9348996	3L_9348996_SNP [dm3] 3L_9355896_SNP [dm6]	C	T	2.665e^-5	0.066	DOWNSTREAM CG32040 INTRON UGP
3R	25222387	3R_25222387_INS [dm3] 3R_29396665_INS [dm6]	GC	AGATA	2.678e^-5	0.066	INTRON Ptp99A
3R	25222391	3R_25222391_SNP [dm3] 3R_29396669_SNP [dm6]	C	G	2.678e^-5	0.066	INTRON Ptp99A
2R	13595609	2R_13595609_SNP [dm3] 2R_17708104_SNP [dm6]	G	A	2.726e^-5	0.066	INTRON CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11675673	2L_11675673_SNP [dm3] 2L_11675673_SNP [dm6]	A	T	2.738e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11675705	2L_11675705_SNP [dm3] 2L_11675705_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11675739	2L_11675739_SNP [dm3] 2L_11675739_SNP [dm6]	C	G	2.738e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12397015	2L_12397015_SNP [dm3] 2L_12397015_SNP [dm6]	G	T	2.738e^-5	0.066	UTR_3_PRIME bru-2
2L	4361162	2L_4361162_SNP [dm3] 2L_4361162_SNP [dm6]	A	C	2.738e^-5	0.066	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4361176	2L_4361176_SNP [dm3] 2L_4361176_SNP [dm6]	T	G	2.738e^-5	0.066	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4852913	2L_4852913_SNP [dm3] 2L_4852913_SNP [dm6]	A	G	2.738e^-5	0.066	UTR_5_PRIME pog DOWNSTREAM Mon1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5563729	2L_5563729_SNP [dm3] 2L_5563729_SNP [dm6]	C	G	2.738e^-5	0.066	DOWNSTREAM GluRIIB INTERGENIC
2L	9835218	2L_9835218_SNP [dm3] 2L_9835218_SNP [dm6]	T	A	2.738e^-5	0.066	INTRON nAChRalpha6
2R	10011647	2R_10011647_SNP [dm3] 2R_14124142_SNP [dm6]	C	T	2.738e^-5	0.066	INTRON Prosap
2R	10011667	2R_10011667_SNP [dm3] 2R_14124162_SNP [dm6]	C	T	2.738e^-5	0.066	INTRON Prosap
2R	12766936	2R_12766936_SNP [dm3] 2R_16879431_SNP [dm6]	A	G	2.738e^-5	0.066	INTRON CG8910
2R	12775390	2R_12775390_SNP [dm3] 2R_16887885_SNP [dm6]	G	A	2.738e^-5	0.066	INTRON CG8910
2R	14986869	2R_14986869_SNP [dm3] 2R_19099364_SNP [dm6]	A	C	2.738e^-5	0.066	INTRON 5-HT1A
2R	14986879	2R_14986879_SNP [dm3] 2R_19099374_SNP [dm6]	C	A	2.738e^-5	0.066	INTRON 5-HT1A
2R	15828901	2R_15828901_SNP [dm3] 2R_19941396_SNP [dm6]	C	T	2.738e^-5	0.066	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15828909	2R_15828909_SNP [dm3] 2R_19941404_SNP [dm6]	C	G	2.738e^-5	0.066	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17514204	2R_17514204_SNP [dm3] 2R_21626699_SNP [dm6]	T	A	2.738e^-5	0.066	SYNONYMOUS_CODING mahj
2R	17641349	2R_17641349_SNP [dm3] 2R_21753844_SNP [dm6]	C	A	2.738e^-5	0.066	INTERGENIC
2R	19037719	2R_19037719_SNP [dm3] 2R_23150196_SNP [dm6]	G	C	2.738e^-5	0.066	INTERGENIC
2R	19393211	2R_19393211_SNP [dm3] 2R_23505688_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC
2R	20809331	2R_20809331_SNP [dm3] 2R_24921808_SNP [dm6]	A	G	2.738e^-5	0.066	NON_SYNONYMOUS_CODING pain DOWNSTREAM NaCP60E	TF binding site mE1_TFBS_cad
2R	7566737	2R_7566737_SNP [dm3] 2R_11679232_SNP [dm6]	T	C	2.738e^-5	0.066	UPSTREAM Buffy INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11375454	3L_11375454_SNP [dm3] 3L_11382354_SNP [dm6]	T	A	2.738e^-5	0.066	DOWNSTREAM CR42755 INTERGENIC
3L	12558834	3L_12558834_SNP [dm3] 3L_12565734_SNP [dm6]	A	C	2.738e^-5	0.066	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12558835	3L_12558835_SNP [dm3] 3L_12565735_SNP [dm6]	C	A	2.738e^-5	0.066	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340087	3L_13340087_SNP [dm3] 3L_13346987_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340285	3L_13340285_SNP [dm3] 3L_13347185_SNP [dm6]	G	C	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340297	3L_13340297_SNP [dm3] 3L_13347197_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340341	3L_13340341_SNP [dm3] 3L_13347241_SNP [dm6]	T	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340386	3L_13340386_SNP [dm3] 3L_13347286_SNP [dm6]	A	G	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13341084	3L_13341084_SNP [dm3] 3L_13347984_SNP [dm6]	T	C	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13341104	3L_13341104_SNP [dm3] 3L_13348004_SNP [dm6]	T	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13924754	3L_13924754_SNP [dm3] 3L_13931654_SNP [dm6]	C	T	2.738e^-5	0.066	INTRON Gl
3L	13924789	3L_13924789_SNP [dm3] 3L_13931689_SNP [dm6]	T	A	2.738e^-5	0.066	INTRON Gl
3L	13924792	3L_13924792_SNP [dm3] 3L_13931692_SNP [dm6]	G	A	2.738e^-5	0.066	INTRON Gl
3L	13924796	3L_13924796_SNP [dm3] 3L_13931696_SNP [dm6]	T	C	2.738e^-5	0.066	INTRON Gl
3L	13924819	3L_13924819_SNP [dm3] 3L_13931719_SNP [dm6]	A	G	2.738e^-5	0.066	INTRON Gl
3L	13972345	3L_13972345_SNP [dm3] 3L_13979245_SNP [dm6]	C	A	2.738e^-5	0.066	INTRON CG17364
3L	13972352	3L_13972352_SNP [dm3] 3L_13979252_SNP [dm6]	T	A	2.738e^-5	0.066	INTRON CG17364
3L	13972380	3L_13972380_SNP [dm3] 3L_13979280_SNP [dm6]	A	G	2.738e^-5	0.066	INTRON CG17364
3L	13972382	3L_13972382_SNP [dm3] 3L_13979282_SNP [dm6]	C	T	2.738e^-5	0.066	INTRON CG17364
3L	15159757	3L_15159757_SNP [dm3] 3L_15166657_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC
3L	15160393	3L_15160393_SNP [dm3] 3L_15167293_SNP [dm6]	A	G	2.738e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15160420	3L_15160420_SNP [dm3] 3L_15167320_SNP [dm6]	T	A	2.738e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15160431	3L_15160431_SNP [dm3] 3L_15167331_SNP [dm6]	T	C	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15161160	3L_15161160_SNP [dm3] 3L_15168060_SNP [dm6]	G	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16022937	3L_16022937_SNP [dm3] 3L_16029837_SNP [dm6]	G	C	2.738e^-5	0.066	SYNONYMOUS_CODING Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17733381	3L_17733381_SNP [dm3] 3L_17740281_SNP [dm6]	A	T	2.738e^-5	0.066	UPSTREAM CG7460 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17736976	3L_17736976_SNP [dm3] 3L_17743876_SNP [dm6]	T	C	2.738e^-5	0.066	INTRON Ccn
3L	17736982	3L_17736982_SNP [dm3] 3L_17743882_SNP [dm6]	T	C	2.738e^-5	0.066	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	17737669	3L_17737669_SNP [dm3] 3L_17744569_SNP [dm6]	A	G	2.738e^-5	0.066	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	17737725	3L_17737725_SNP [dm3] 3L_17744625_SNP [dm6]	C	G	2.738e^-5	0.066	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	17738225	3L_17738225_MNP [dm3] 3L_17745125_MNP [dm6]	TGC	GTG	2.738e^-5	0.066	DOWNSTREAM CG6034 INTRON Ccn
3L	17738369	3L_17738369_SNP [dm3] 3L_17745269_SNP [dm6]	T	A	2.738e^-5	0.066	UTR_3_PRIME CG6034 INTRON Ccn
3L	17738848	3L_17738848_SNP [dm3] 3L_17745748_SNP [dm6]	T	A	2.738e^-5	0.066	SYNONYMOUS_CODING CG6034 INTRON Ccn
3L	17739154	3L_17739154_SNP [dm3] 3L_17746054_SNP [dm6]	G	A	2.738e^-5	0.066	SYNONYMOUS_CODING CG6034 INTRON Ccn
3L	17739742	3L_17739742_SNP [dm3] 3L_17746642_SNP [dm6]	G	A	2.738e^-5	0.066	SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_sens
3L	934108	3L_934108_SNP [dm3] 3L_934108_SNP [dm6]	C	A	2.738e^-5	0.066	INTRON Glut1
3L	934137	3L_934137_SNP [dm3] 3L_934137_SNP [dm6]	C	A	2.738e^-5	0.066	INTRON Glut1
3R	10114603	3R_10114603_SNP [dm3] 3R_14288881_SNP [dm6]	G	A	2.738e^-5	0.066	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10737963	3R_10737963_SNP [dm3] 3R_14912241_SNP [dm6]	T	A	2.738e^-5	0.066	INTERGENIC
3R	14607573	3R_14607573_SNP [dm3] 3R_18781851_SNP [dm6]	T	A	2.738e^-5	0.066	INTRON CG7720
3R	18449065	3R_18449065_SNP [dm3] 3R_22623343_SNP [dm6]	C	T	2.738e^-5	0.066	INTRON loco
3R	18865241	3R_18865241_SNP [dm3] 3R_23039519_SNP [dm6]	C	A	2.738e^-5	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18870066	3R_18870066_SNP [dm3] 3R_23044344_SNP [dm6]	T	C	2.738e^-5	0.066	NON_SYNONYMOUS_CODING CG13837 DOWNSTREAM CG17121	TF binding site BDTNP1_TFBS_twi
3R	20122010	3R_20122010_SNP [dm3] 3R_24296288_SNP [dm6]	G	T	2.738e^-5	0.066	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23608447	3R_23608447_SNP [dm3] 3R_27782725_SNP [dm6]	C	G	2.738e^-5	0.066	INTRON CG34353
3R	26044436	3R_26044436_SNP [dm3] 3R_30218714_SNP [dm6]	C	T	2.738e^-5	0.066	INTERGENIC
3R	26044509	3R_26044509_SNP [dm3] 3R_30218787_SNP [dm6]	C	T	2.738e^-5	0.066	INTERGENIC
3R	26044830	3R_26044830_SNP [dm3] 3R_30219108_SNP [dm6]	G	T	2.738e^-5	0.066	INTERGENIC
3R	8098934	3R_8098934_SNP [dm3] 3R_12273212_SNP [dm6]	G	A	2.738e^-5	0.066	SYNONYMOUS_CODING Sfp87B INTRON svp
3R	8434772	3R_8434772_SNP [dm3] 3R_12609050_SNP [dm6]	A	T	2.738e^-5	0.066	INTERGENIC
X	18782708	X_18782708_SNP [dm3] X_18888675_SNP [dm6]	T	A	2.738e^-5	0.066	UTR_3_PRIME CG7332 DOWNSTREAM CG7358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18782928	X_18782928_SNP [dm3] X_18888895_SNP [dm6]	A	G	2.738e^-5	0.066	DOWNSTREAM CG7358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18782958	X_18782958_SNP [dm3] X_18888925_SNP [dm6]	C	T	2.738e^-5	0.066	DOWNSTREAM CG7358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6793432	X_6793432_SNP [dm3] X_6899399_SNP [dm6]	C	G	2.738e^-5	0.066	INTERGENIC
3R	15473484	3R_15473484_SNP [dm3] 3R_19647762_SNP [dm6]	C	T	2.754e^-5	0.066	SYNONYMOUS_CODING CG6195 UPSTREAM CG31220 DOWNSTREAM Nup58	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13176741	3L_13176741_SNP [dm3] 3L_13183641_SNP [dm6]	A	C	2.794e^-5	0.067	INTERGENIC
3L	4000823	3L_4000823_SNP [dm3] 3L_4000823_SNP [dm6]	C	G	2.794e^-5	0.067	INTERGENIC
X	12958170	X_12958170_SNP [dm3] X_13064137_SNP [dm6]	A	G	2.798e^-5	0.067	INTRON rad
3R	15329085	3R_15329085_SNP [dm3] 3R_19503363_SNP [dm6]	G	C	2.821e^-5	0.068	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2R	5065933	2R_5065933_SNP [dm3] 2R_9178428_SNP [dm6]	C	T	2.862e^-5	0.068	UTR_3_PRIME ltd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19447362	3R_19447362_DEL [dm3] 3R_23621640_DEL [dm6]	GAT	G	2.869e^-5	0.068	INTRON CG31145
2L	13694691	2L_13694691_SNP [dm3] 2L_13694691_SNP [dm6]	C	T	2.877e^-5	0.068	INTRON CG31814
3R	16565807	3R_16565807_SNP [dm3] 3R_20740085_SNP [dm6]	C	T	2.877e^-5	0.068	UPSTREAM CG17267 & 1 other INTERGENIC
3R	9979844	3R_9979844_SNP [dm3] 3R_14154122_SNP [dm6]	C	G	2.884e^-5	0.069	UPSTREAM CG9722 DOWNSTREAM CG31533 EXON CR44215
2L	8337818	2L_8337818_SNP [dm3] 2L_8337818_SNP [dm6]	C	T	2.894e^-5	0.069	UPSTREAM CG14274 INTERGENIC
3R	18942566	3R_18942566_SNP [dm3] 3R_23116844_SNP [dm6]	A	T	2.919e^-5	0.069	SYNONYMOUS_CODING Rassf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_sens
3R	15193280	3R_15193280_SNP [dm3] 3R_19367558_SNP [dm6]	G	A	2.944e^-5	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8153887	2R_8153887_SNP [dm3] 2R_12266382_SNP [dm6]	G	A	2.952e^-5	0.07	INTRON Cam
X	15541716	X_15541716_SNP [dm3] X_15647683_SNP [dm6]	G	A	2.966e^-5	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15541718	X_15541718_SNP [dm3] X_15647685_SNP [dm6]	T	A	2.966e^-5	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5563481	2L_5563481_SNP [dm3] 2L_5563481_SNP [dm6]	A	G	2.967e^-5	0.07	UTR_3_PRIME GluRIIB
2L	5563482	2L_5563482_SNP [dm3] 2L_5563482_SNP [dm6]	A	G	2.967e^-5	0.07	UTR_3_PRIME GluRIIB
X	7533667	X_7533667_INS [dm3] X_7639634_INS [dm6]	T	TT	2.976e^-5	0.07	INTRON ct
X	21287474	X_21287474_DEL [dm3] X_21416447_DEL [dm6]	AGGTGAGGTGA...	A	2.982e^-5	0.07	INTERGENIC
2L	2556819	2L_2556819_SNP [dm3] 2L_2556819_SNP [dm6]	C	A	2.987e^-5	0.07	DOWNSTREAM CR44113 INTERGENIC
3R	10421580	3R_10421580_SNP [dm3] 3R_14595858_SNP [dm6]	G	A	2.989e^-5	0.07	UPSTREAM stumps INTRON stumps	regulatory region REDfly_CRMs
3L	17231980	3L_17231980_SNP [dm3] 3L_17238880_SNP [dm6]	A	G	3.023e^-5	0.071	UTR_3_PRIME CG6512 UPSTREAM Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1826698	2L_1826698_SNP [dm3] 2L_1826698_SNP [dm6]	A	T	3.030e^-5	0.071	UPSTREAM CG31664 INTERGENIC
2R	3911025	2R_3911025_SNP [dm3] 2R_8023520_SNP [dm6]	G	A	3.045e^-5	0.071	EXON CR45267
3R	23071537	3R_23071537_SNP [dm3] 3R_27245815_SNP [dm6]	C	T	3.056e^-5	0.071	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	5923871	2R_5923871_SNP [dm3] 2R_10036366_SNP [dm6]	C	T	3.075e^-5	0.072	UTR_3_PRIME oys
3R	7974457	3R_7974457_SNP [dm3] 3R_12148735_SNP [dm6]	A	G	3.096e^-5	0.072	INTRON dpr15
3R	22477838	3R_22477838_SNP [dm3] 3R_26652116_SNP [dm6]	C	A	3.113e^-5	0.072	INTRON beat-VII
3R	18989823	3R_18989823_SNP [dm3] 3R_23164101_SNP [dm6]	T	G	3.140e^-5	0.073	INTERGENIC
2L	11685245	2L_11685245_DEL [dm3] 2L_11685245_DEL [dm6]	TTTCGCGAACCCAC...	T	3.150e^-5	0.073	INTERGENIC
2L	11710689	2L_11710689_SNP [dm3] 2L_11710689_SNP [dm6]	T	A	3.150e^-5	0.073	INTERGENIC
3R	16773431	3R_16773431_SNP [dm3] 3R_20947709_SNP [dm6]	C	G	3.156e^-5	0.073	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	5245531	3L_5245531_SNP [dm3] 3L_5252431_SNP [dm6]	G	A	3.163e^-5	0.073	INTRON shep
X	2814786	X_2814786_SNP [dm3] X_2920753_SNP [dm6]	G	T	3.163e^-5	0.073	INTRON kirre & 1 other
2L	16317241	2L_16317241_SNP [dm3] 2L_16317241_SNP [dm6]	C	T	3.179e^-5	0.073	INTRON cact
3R	5362393	3R_5362393_SNP [dm3] 3R_9536671_SNP [dm6]	T	C	3.187e^-5	0.073	UTR_3_PRIME mura
3R	23070775	3R_23070775_SNP [dm3] 3R_27245053_SNP [dm6]	T	C	3.190e^-5	0.073	UTR_5_PRIME CG18766 UPSTREAM CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23070937	3R_23070937_SNP [dm3] 3R_27245215_SNP [dm6]	G	A	3.190e^-5	0.073	UTR_5_PRIME CG18766 UPSTREAM CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14507058	2L_14507058_SNP [dm3] 2L_14507058_SNP [dm6]	T	C	3.208e^-5	0.073	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16291849	2L_16291849_DEL [dm3] 2L_16291849_DEL [dm6]	TG	T	3.208e^-5	0.073	UTR_3_PRIME CG17329 DOWNSTREAM CG13258 & 1 other
X	20632528	X_20632528_DEL [dm3] X_20761501_DEL [dm6]	CC	C	3.211e^-5	0.073	UTR_3_PRIME shakB UPSTREAM CR43838
2L	13314081	2L_13314081_SNP [dm3] 2L_13314081_SNP [dm6]	A	G	3.239e^-5	0.074	INTRON CG43778
3R	26553731	3R_26553731_SNP [dm3] 3R_30728009_SNP [dm6]	T	A	3.272e^-5	0.075	UTR_3_PRIME CG1340 DOWNSTREAM CG1340	TF binding site mE1_TFBS_chinmo
2L	4628162	2L_4628162_SNP [dm3] 2L_4628162_SNP [dm6]	C	T	3.281e^-5	0.075	INTERGENIC
2L	14009761	2L_14009761_SNP [dm3] 2L_14009761_SNP [dm6]	G	C	3.294e^-5	0.075	DOWNSTREAM CG42692 & 1 other INTERGENIC
X	14909658	X_14909658_SNP [dm3] X_15015625_SNP [dm6]	A	T	3.294e^-5	0.075	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	11910569	2L_11910569_SNP [dm3] 2L_11910569_SNP [dm6]	A	G	3.299e^-5	0.075	INTRON Pde1c
2L	11910600	2L_11910600_SNP [dm3] 2L_11910600_SNP [dm6]	C	T	3.299e^-5	0.075	INTRON Pde1c
2R	4598180	2R_4598180_SNP [dm3] 2R_8710675_SNP [dm6]	G	A	3.299e^-5	0.075	NON_SYNONYMOUS_CODING CG14743 DOWNSTREAM PGRP-SC1a
2R	4598193	2R_4598193_SNP [dm3] 2R_8710688_SNP [dm6]	G	A	3.299e^-5	0.075	DOWNSTREAM PGRP-SC1a INTRON CG14743
2R	12519712	2R_12519712_SNP [dm3] 2R_16632207_SNP [dm6]	G	T	3.305e^-5	0.075	INTRON Alk
X	21201743	X_21201743_SNP [dm3] X_21330716_SNP [dm6]	A	T	3.312e^-5	0.075	UTR_3_PRIME tty DOWNSTREAM tty
3R	17742419	3R_17742419_SNP [dm3] 3R_21916697_SNP [dm6]	A	T	3.317e^-5	0.075	INTERGENIC
3R	14452876	3R_14452876_SNP [dm3] 3R_18627154_SNP [dm6]	G	C	3.339e^-5	0.075	INTRON qin
3R	14452877	3R_14452877_SNP [dm3] 3R_18627155_SNP [dm6]	C	T	3.339e^-5	0.075	INTRON qin
2R	8902631	2R_8902631_DEL [dm3] 2R_13015126_DEL [dm6]	ACATAAGTCCAAAA...	A	3.349e^-5	0.075	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6803622	2R_6803622_SNP [dm3] 2R_10916117_SNP [dm6]	G	C	3.375e^-5	0.075	INTERGENIC
3L	4800904	3L_4800904_SNP [dm3] 3L_4800904_SNP [dm6]	A	T	3.377e^-5	0.075	DOWNSTREAM CR45740 INTERGENIC
3R	21905023	3R_21905023_SNP [dm3] 3R_26079301_SNP [dm6]	T	A	3.377e^-5	0.075	INTRON dys
2L	12648929	2L_12648929_SNP [dm3] 2L_12648929_SNP [dm6]	A	G	3.387e^-5	0.075	INTERGENIC
2L	6063572	2L_6063572_SNP [dm3] 2L_6063572_SNP [dm6]	A	G	3.409e^-5	0.075	UTR_3_PRIME Fbw5 & 1 other UPSTREAM CG9140
2R	10009010	2R_10009010_INS [dm3] 2R_14121505_INS [dm6]	T	TT	3.409e^-5	0.075	INTRON Prosap	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13340214	3L_13340214_SNP [dm3] 3L_13347114_SNP [dm6]	A	C	3.409e^-5	0.075	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13893640	3L_13893640_SNP [dm3] 3L_13900540_SNP [dm6]	C	A	3.409e^-5	0.075	INTRON dysc
3L	13924769	3L_13924769_SNP [dm3] 3L_13931669_SNP [dm6]	C	T	3.409e^-5	0.075	INTRON Gl
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	3.409e^-5	0.075	INTRON Ccn
3L	17741712	3L_17741712_SNP [dm3] 3L_17748612_SNP [dm6]	C	A	3.409e^-5	0.075	UTR_3_PRIME Ccn DOWNSTREAM Adgf-B
3L	3406491	3L_3406491_SNP [dm3] 3L_3406491_SNP [dm6]	G	T	3.409e^-5	0.075	INTRON sty
3R	17957035	3R_17957035_SNP [dm3] 3R_22131313_SNP [dm6]	A	G	3.409e^-5	0.075	SYNONYMOUS_CODING CG42390
3R	17957072	3R_17957072_SNP [dm3] 3R_22131350_SNP [dm6]	A	G	3.409e^-5	0.075	SPLICE_SITE_REGION CG42390 INTRON CG42390
3R	18989859	3R_18989859_SNP [dm3] 3R_23164137_SNP [dm6]	T	A	3.459e^-5	0.076	INTERGENIC
X	785644	X_785644_SNP [dm3] X_891611_SNP [dm6]	C	G	3.478e^-5	0.076	INTRON CG43867
2L	15747376	2L_15747376_SNP [dm3] 2L_15747376_SNP [dm6]	C	T	3.482e^-5	0.076	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	9404811	X_9404811_SNP [dm3] X_9510778_SNP [dm6]	G	C	3.482e^-5	0.076	UPSTREAM CG34028 INTRON CG32700
3R	26044488	3R_26044488_SNP [dm3] 3R_30218766_SNP [dm6]	C	T	3.490e^-5	0.076	INTERGENIC
2R	19018094	2R_19018094_INS [dm3] 2R_23130571_INS [dm6]	C	CTC	3.494e^-5	0.076	UPSTREAM CG3215 INTERGENIC
X	7769894	X_7769894_SNP [dm3] X_7875861_SNP [dm6]	T	C	3.524e^-5	0.077	NON_SYNONYMOUS_CODING Ir7c
2R	10670427	2R_10670427_SNP [dm3] 2R_14782922_SNP [dm6]	G	A	3.535e^-5	0.077	INTRON kn
2R	9406428	2R_9406428_SNP [dm3] 2R_13518923_SNP [dm6]	A	G	3.538e^-5	0.077	INTRON Vmat	TF binding site mE1_TFBS_cad
2L	10218799	2L_10218799_SNP [dm3] 2L_10218799_SNP [dm6]	G	A	3.540e^-5	0.077	SYNONYMOUS_CODING Npc1a
2R	10163225	2R_10163225_SNP [dm3] 2R_14275720_SNP [dm6]	G	C	3.544e^-5	0.077	UPSTREAM Ih DOWNSTREAM conv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8174653	2R_8174653_SNP [dm3] 2R_12287148_SNP [dm6]	A	T	3.561e^-5	0.077	INTRON CG42700
3R	9170757	3R_9170757_SNP [dm3] 3R_13345035_SNP [dm6]	C	G	3.568e^-5	0.077	UTR_3_PRIME PK2-R1
3R	9201334	3R_9201334_SNP [dm3] 3R_13375612_SNP [dm6]	C	T	3.568e^-5	0.077	INTRON CG9813	transposable element FlyBase
3R	9207926	3R_9207926_SNP [dm3] 3R_13382204_SNP [dm6]	G	A	3.568e^-5	0.077	SPLICE_SITE_REGION Droj2 UTR_5_PRIME Droj2 UPSTREAM mRpS21 & 1 other DOWNSTREAM CG8870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16948176	2L_16948176_SNP [dm3] 2L_16948176_SNP [dm6]	C	T	3.571e^-5	0.077	INTRON CR44393
3L	13924814	3L_13924814_SNP [dm3] 3L_13931714_SNP [dm6]	C	T	3.571e^-5	0.077	INTRON Gl
3L	15160411	3L_15160411_INS [dm3] 3L_15167311_INS [dm6]	T	TAT	3.571e^-5	0.077	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11646972	2R_11646972_SNP [dm3] 2R_15759467_SNP [dm6]	G	A	3.585e^-5	0.077	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14301479	3R_14301479_SNP [dm3] 3R_18475757_SNP [dm6]	G	T	3.600e^-5	0.077	INTRON fru
X	3536286	X_3536286_SNP [dm3] X_3642253_SNP [dm6]	T	A	3.600e^-5	0.077	INTRON AstA-R1
3L	4175502	3L_4175502_SNP [dm3] 3L_4175502_SNP [dm6]	A	G	3.605e^-5	0.077	SYNONYMOUS_CODING Teh4 INTRON CG18675
X	14157472	X_14157472_SNP [dm3] X_14263439_SNP [dm6]	T	G	3.616e^-5	0.078	INTRON CG1461
3R	23223189	3R_23223189_SNP [dm3] 3R_27397467_SNP [dm6]	G	A	3.698e^-5	0.079	INTRON side
X	6303926	X_6303926_SNP [dm3] X_6409893_SNP [dm6]	C	T	3.701e^-5	0.079	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10322865	3L_10322865_SNP [dm3] 3L_10329765_SNP [dm6]	G	T	3.703e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3L	16022562	3L_16022562_SNP [dm3] 3L_16029462_SNP [dm6]	A	G	3.703e^-5	0.079	SYNONYMOUS_CODING Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17737671	3L_17737671_SNP [dm3] 3L_17744571_SNP [dm6]	C	A	3.703e^-5	0.079	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	14547713	3R_14547713_SNP [dm3] 3R_18721991_SNP [dm6]	T	C	3.703e^-5	0.079	UTR_3_PRIME CG34283 INTRON Cha
3R	22490479	3R_22490479_SNP [dm3] 3R_26664757_SNP [dm6]	A	G	3.703e^-5	0.079	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
3R	25407443	3R_25407443_SNP [dm3] 3R_29581721_SNP [dm6]	C	A	3.703e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22449188	3R_22449188_SNP [dm3] 3R_26623466_SNP [dm6]	T	C	3.744e^-5	0.079	INTRON TwdlB
2L	9517078	2L_9517078_INS [dm3] 2L_9517078_INS [dm6]	T	TA	3.749e^-5	0.079	INTRON CG33298
X	21205728	X_21205728_SNP [dm3] X_21334701_SNP [dm6]	G	A	3.751e^-5	0.079	INTRON tty
X	16693197	X_16693197_SNP [dm3] X_16799164_SNP [dm6]	A	C	3.804e^-5	0.079	INTRON CG9132
X	20723053	X_20723053_SNP [dm3] X_20852026_SNP [dm6]	T	C	3.836e^-5	0.079	INTRON shakB
3R	26560087	3R_26560087_SNP [dm3] 3R_30734365_SNP [dm6]	A	T	3.846e^-5	0.079	INTERGENIC
3R	17573394	3R_17573394_SNP [dm3] 3R_21747672_SNP [dm6]	C	T	3.853e^-5	0.079	SYNONYMOUS_CODING CG31343	TF binding site mE1_TFBS_cad
3L	14967607	3L_14967607_DEL [dm3] 3L_14974507_DEL [dm6]	CTGTAAATATAAATGTAAGG...	C	3.861e^-5	0.079	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9965067	3R_9965067_DEL [dm3] 3R_14139345_DEL [dm6]	ACA	A	3.897e^-5	0.079	INTERGENIC
X	3779257	X_3779257_SNP [dm3] X_3885224_SNP [dm6]	G	T	3.897e^-5	0.079	INTRON CG15239
3L	11536044	3L_11536044_SNP [dm3] 3L_11542944_SNP [dm6]	T	A	3.907e^-5	0.079	INTRON Mob2
3R	23628849	3R_23628849_INS [dm3] 3R_27803127_INS [dm6]	C	CCTGGATGAGGATGAACGAG...	3.917e^-5	0.079	INTRON CG34353
2R	12539100	2R_12539100_SNP [dm3] 2R_16651595_SNP [dm6]	G	A	3.920e^-5	0.079	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
3L	11638505	3L_11638505_SNP [dm3] 3L_11645405_SNP [dm6]	C	G	3.922e^-5	0.079	DOWNSTREAM RIOK1 INTRON CG6071
3R	7976054	3R_7976054_SNP [dm3] 3R_12150332_SNP [dm6]	T	G	3.926e^-5	0.079	INTRON dpr15
2R	12438483	2R_12438483_SNP [dm3] 2R_16550978_SNP [dm6]	A	C	3.941e^-5	0.079	INTERGENIC
2R	12438496	2R_12438496_SNP [dm3] 2R_16550991_SNP [dm6]	T	A	3.941e^-5	0.079	INTERGENIC
2R	20140419	2R_20140419_SNP [dm3] 2R_24252896_SNP [dm6]	C	T	3.968e^-5	0.079	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_chinmo
2L	9063030	2L_9063030_SNP [dm3] 2L_9063030_SNP [dm6]	G	A	4.001e^-5	0.079	INTRON CG31708
2L	13371063	2L_13371063_SNP [dm3] 2L_13371063_SNP [dm6]	A	G	4.051e^-5	0.079	UTR_5_PRIME CG9306 UPSTREAM CG9306 DOWNSTREAM CG31855 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	20603153	3R_20603153_SNP [dm3] 3R_24777431_SNP [dm6]	G	A	4.124e^-5	0.079	INTRON CG42331
2R	8174666	2R_8174666_SNP [dm3] 2R_12287161_SNP [dm6]	G	T	4.142e^-5	0.079	INTRON CG42700
3R	23629369	3R_23629369_SNP [dm3] 3R_27803647_SNP [dm6]	T	C	4.153e^-5	0.079	INTRON CG34353
3L	15135687	3L_15135687_SNP [dm3] 3L_15142587_SNP [dm6]	A	T	4.156e^-5	0.079	START_GAINED Pdi UTR_5_PRIME Pdi DOWNSTREAM CG32147 EXON CR45396	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25216473	3R_25216473_SNP [dm3] 3R_29390751_SNP [dm6]	C	T	4.156e^-5	0.079	INTRON Ptp99A
3R	19022642	3R_19022642_SNP [dm3] 3R_23196920_SNP [dm6]	A	C	4.160e^-5	0.079	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21338191	3R_21338191_SNP [dm3] 3R_25512469_SNP [dm6]	G	A	4.164e^-5	0.079	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14559422	3R_14559422_SNP [dm3] 3R_18733700_SNP [dm6]	C	A	4.215e^-5	0.079	DOWNSTREAM CG14302 INTRON Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14909467	X_14909467_SNP [dm3] X_15015434_SNP [dm6]	T	C	4.230e^-5	0.079	NON_SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	13589040	2R_13589040_SNP [dm3] 2R_17701535_SNP [dm6]	C	T	4.281e^-5	0.079	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
3R	20816187	3R_20816187_SNP [dm3] 3R_24990465_SNP [dm6]	A	C	4.318e^-5	0.079	INTRON tnc
2R	7764884	2R_7764884_SNP [dm3] 2R_11877379_SNP [dm6]	G	A	4.346e^-5	0.079	SYNONYMOUS_CODING CG13185
3L	13052748	3L_13052748_DEL [dm3] 3L_13059648_DEL [dm6]	AA	A	4.360e^-5	0.079	DOWNSTREAM CG14115 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27112746	3R_27112746_DEL [dm3] 3R_31287024_DEL [dm6]	AAGACCA	A	4.370e^-5	0.079	INTERGENIC
2R	15011294	2R_15011294_SNP [dm3] 2R_19123789_SNP [dm6]	G	C	4.400e^-5	0.079	SYNONYMOUS_CODING CG15117
3R	14697716	3R_14697716_SNP [dm3] 3R_18871994_SNP [dm6]	C	A	4.403e^-5	0.079	INTERGENIC
3L	20920316	3L_20920316_INS [dm3] 3L_20927216_INS [dm6]	T	TT	4.412e^-5	0.079	UPSTREAM CG10589 INTRON fng	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7599426	3R_7599426_SNP [dm3] 3R_11773704_SNP [dm6]	T	C	4.418e^-5	0.079	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7599511	3R_7599511_SNP [dm3] 3R_11773789_SNP [dm6]	C	T	4.418e^-5	0.079	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12418490	2L_12418490_SNP [dm3] 2L_12418490_SNP [dm6]	G	T	4.418e^-5	0.079	INTRON vir-1
3L	10321208	3L_10321208_SNP [dm3] 3L_10328108_SNP [dm6]	G	A	4.442e^-5	0.079	DOWNSTREAM CR45244 INTERGENIC
2L	5563969	2L_5563969_SNP [dm3] 2L_5563969_SNP [dm6]	A	C	4.457e^-5	0.079	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2R	12775338	2R_12775338_SNP [dm3] 2R_16887833_SNP [dm6]	A	T	4.457e^-5	0.079	INTRON CG8910
2R	12775340	2R_12775340_SNP [dm3] 2R_16887835_SNP [dm6]	A	T	4.457e^-5	0.079	INTRON CG8910
2R	12775345	2R_12775345_DEL [dm3] 2R_16887840_DEL [dm6]	ATAAAAGTCAAATCA...	A	4.457e^-5	0.079	INTRON CG8910
2R	15828944	2R_15828944_SNP [dm3] 2R_19941439_SNP [dm6]	C	T	4.457e^-5	0.079	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18834260	2R_18834260_SNP [dm3] 2R_22946737_SNP [dm6]	C	T	4.457e^-5	0.079	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13340119	3L_13340119_SNP [dm3] 3L_13347019_SNP [dm6]	C	T	4.457e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13340163	3L_13340163_SNP [dm3] 3L_13347063_SNP [dm6]	T	C	4.457e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	4.457e^-5	0.079	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	4.457e^-5	0.079	INTRON Ccn
3L	17738180	3L_17738180_SNP [dm3] 3L_17745080_SNP [dm6]	A	T	4.457e^-5	0.079	DOWNSTREAM CG6034 INTRON Ccn
3L	6255899	3L_6255899_SNP [dm3] 3L_6262799_SNP [dm6]	T	C	4.457e^-5	0.079	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6255918	3L_6255918_SNP [dm3] 3L_6262818_SNP [dm6]	A	G	4.457e^-5	0.079	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6255920	3L_6255920_SNP [dm3] 3L_6262820_SNP [dm6]	A	T	4.457e^-5	0.079	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14711818	3R_14711818_SNP [dm3] 3R_18886096_SNP [dm6]	G	T	4.457e^-5	0.079	INTERGENIC
3R	18364883	3R_18364883_SNP [dm3] 3R_22539161_SNP [dm6]	T	A	4.457e^-5	0.079	UPSTREAM CR45646 INTRON CG5326
3R	23216474	3R_23216474_SNP [dm3] 3R_27390752_SNP [dm6]	A	C	4.457e^-5	0.079	INTRON side
3R	27203877	3R_27203877_SNP [dm3] 3R_31378155_SNP [dm6]	T	C	4.457e^-5	0.079	INTERGENIC
X	10811040	X_10811040_SNP [dm3] X_10917007_SNP [dm6]	A	C	4.457e^-5	0.079	SYNONYMOUS_CODING CG43901	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19445545	X_19445545_SNP [dm3] X_19551512_SNP [dm6]	G	T	4.457e^-5	0.079	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
X	3208614	X_3208614_SNP [dm3] X_3314581_SNP [dm6]	C	T	4.457e^-5	0.079	NON_SYNONYMOUS_CODING dnc DOWNSTREAM CG10793 INTRON dnc & 1 other
3L	11673846	3L_11673846_SNP [dm3] 3L_11680746_SNP [dm6]	C	A	4.463e^-5	0.079	UPSTREAM CG32085 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9735478	X_9735478_SNP [dm3] X_9841445_SNP [dm6]	C	T	4.515e^-5	0.079	INTRON CG32698
2L	15139019	2L_15139019_SNP [dm3] 2L_15139019_SNP [dm6]	C	T	4.519e^-5	0.079	INTERGENIC
2L	13310504	2L_13310504_SNP [dm3] 2L_13310504_SNP [dm6]	A	G	4.520e^-5	0.079	INTRON CG43778
3R	26089889	3R_26089889_SNP [dm3] 3R_30264167_SNP [dm6]	T	G	4.539e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17022055	2R_17022055_SNP [dm3] 2R_21134550_SNP [dm6]	G	A	4.556e^-5	0.079	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17022059	2R_17022059_SNP [dm3] 2R_21134554_SNP [dm6]	C	G	4.556e^-5	0.079	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15687103	3L_15687103_SNP [dm3] 3L_15694003_SNP [dm6]	T	G	4.559e^-5	0.079	INTERGENIC
3L	10643039	3L_10643039_SNP [dm3] 3L_10649939_SNP [dm6]	C	A	4.565e^-5	0.079	INTRON CG32066
X	6767263	X_6767263_DEL [dm3] X_6873230_DEL [dm6]	TTGT	T	4.569e^-5	0.079	INTRON CG43736	TF binding site mE1_TFBS_HSA
3R	16567915	3R_16567915_INS [dm3] 3R_20742193_INS [dm6]	A	AGAA	4.607e^-5	0.079	DOWNSTREAM CG31199 INTRON CG42322
2L	4361086	2L_4361086_SNP [dm3] 2L_4361086_SNP [dm6]	T	C	4.614e^-5	0.079	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17482179	2R_17482179_SNP [dm3] 2R_21594674_SNP [dm6]	C	A	4.614e^-5	0.079	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14563565	3R_14563565_SNP [dm3] 3R_18737843_SNP [dm6]	G	T	4.614e^-5	0.079	SYNONYMOUS_CODING Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21197515	X_21197515_SNP [dm3] X_21326488_SNP [dm6]	G	A	4.619e^-5	0.079	SYNONYMOUS_CODING CG1486
2L	3114476	2L_3114476_SNP [dm3] 2L_3114476_SNP [dm6]	C	G	4.668e^-5	0.079	INTRON toc
X	14035197	X_14035197_SNP [dm3] X_14141164_SNP [dm6]	G	T	4.672e^-5	0.079	UPSTREAM CR44658 INTERGENIC
X	10071264	X_10071264_INS [dm3] X_10177231_INS [dm6]	T	TGAAAGTAT	4.678e^-5	0.079	INTRON CG43902 & 1 other	TF binding site mE1_TFBS_sbb
2R	6526611	2R_6526611_SNP [dm3] 2R_10639106_SNP [dm6]	C	T	4.691e^-5	0.079	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3993338	3L_3993338_SNP [dm3] 3L_3993338_SNP [dm6]	A	T	4.691e^-5	0.079	UTR_3_PRIME scrt
X	14909601	X_14909601_SNP [dm3] X_15015568_SNP [dm6]	A	G	4.691e^-5	0.079	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	22515934	3R_22515934_SNP [dm3] 3R_26690212_SNP [dm6]	C	T	4.696e^-5	0.079	INTERGENIC
X	14910187	X_14910187_SNP [dm3] X_15016154_SNP [dm6]	C	A	4.719e^-5	0.079	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	16565855	3R_16565855_SNP [dm3] 3R_20740133_SNP [dm6]	G	C	4.735e^-5	0.079	UTR_5_PRIME CG42322
2R	6119920	2R_6119920_SNP [dm3] 2R_10232415_SNP [dm6]	C	G	4.742e^-5	0.079	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6101005	2L_6101005_SNP [dm3] 2L_6101005_SNP [dm6]	A	G	4.773e^-5	0.079	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	15541710	X_15541710_SNP [dm3] X_15647677_SNP [dm6]	T	C	4.792e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15541730	X_15541730_SNP [dm3] X_15647697_SNP [dm6]	G	T	4.792e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	11124640	2R_11124640_SNP [dm3] 2R_15237135_SNP [dm6]	C	A	4.808e^-5	0.079	INTRON Fs	TF binding site BDTNP1_TFBS_da
2R	14049390	2R_14049390_SNP [dm3] 2R_18161885_SNP [dm6]	A	G	4.810e^-5	0.079	INTRON CG10915
3R	19022696	3R_19022696_SNP [dm3] 3R_23196974_SNP [dm6]	C	T	4.810e^-5	0.079	INTRON cnc	TF binding site BDTNP1_TFBS_twi
3R	19022697	3R_19022697_SNP [dm3] 3R_23196975_SNP [dm6]	A	C	4.810e^-5	0.079	INTRON cnc	TF binding site BDTNP1_TFBS_twi
3R	19022704	3R_19022704_INS [dm3] 3R_23196982_INS [dm6]	A	ACCGTCTGTAAA...	4.810e^-5	0.079	INTRON cnc	TF binding site BDTNP1_TFBS_twi
2L	5124428	2L_5124428_SNP [dm3] 2L_5124428_SNP [dm6]	A	G	4.811e^-5	0.079	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	4.820e^-5	0.079	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10306081	3R_10306081_SNP [dm3] 3R_14480359_SNP [dm6]	T	C	4.820e^-5	0.079	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	8667972	X_8667972_SNP [dm3] X_8773939_SNP [dm6]	C	T	4.820e^-5	0.079	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8667973	X_8667973_SNP [dm3] X_8773940_SNP [dm6]	C	T	4.820e^-5	0.079	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23071265	3R_23071265_SNP [dm3] 3R_27245543_SNP [dm6]	C	G	4.823e^-5	0.079	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24631188	3R_24631188_SNP [dm3] 3R_28805466_SNP [dm6]	A	G	4.823e^-5	0.079	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3448607	2L_3448607_SNP [dm3] 2L_3448607_SNP [dm6]	A	T	4.838e^-5	0.079	INTERGENIC
2L	16965909	2L_16965909_SNP [dm3] 2L_16965909_SNP [dm6]	C	T	4.848e^-5	0.079	DOWNSTREAM CR45285 INTERGENIC
3R	24064314	3R_24064314_SNP [dm3] 3R_28238592_SNP [dm6]	T	C	4.873e^-5	0.079	UTR_3_PRIME CG34354 UPSTREAM CR45041
3R	24064320	3R_24064320_SNP [dm3] 3R_28238598_SNP [dm6]	T	C	4.873e^-5	0.079	UTR_3_PRIME CG34354 UPSTREAM CR45041
3L	7284111	3L_7284111_DEL [dm3] 3L_7291011_DEL [dm6]	CTT	C	4.896e^-5	0.079	INTRON unc-13-4A
3R	17809061	3R_17809061_SNP [dm3] 3R_21983339_SNP [dm6]	T	C	4.956e^-5	0.079	INTRON Eip93F
X	3731904	X_3731904_SNP [dm3] X_3837871_SNP [dm6]	C	A	4.970e^-5	0.079	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10836029	2L_10836029_SNP [dm3] 2L_10836029_SNP [dm6]	T	C	5.011e^-5	0.079	INTRON Nos
2L	10836030	2L_10836030_SNP [dm3] 2L_10836030_SNP [dm6]	C	G	5.011e^-5	0.079	INTRON Nos
2L	11710697	2L_11710697_SNP [dm3] 2L_11710697_SNP [dm6]	C	G	5.040e^-5	0.079	INTERGENIC
2R	6348779	2R_6348779_SNP [dm3] 2R_10461274_SNP [dm6]	C	G	5.070e^-5	0.079	INTRON Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6348821	2R_6348821_SNP [dm3] 2R_10461316_SNP [dm6]	G	C	5.070e^-5	0.079	SYNONYMOUS_CODING Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19022791	3R_19022791_SNP [dm3] 3R_23197069_SNP [dm6]	T	G	5.093e^-5	0.079	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23398921	3R_23398921_SNP [dm3] 3R_27573199_SNP [dm6]	A	G	5.108e^-5	0.079	INTRON wdb
3L	3565621	3L_3565621_SNP [dm3] 3L_3565621_SNP [dm6]	T	A	5.130e^-5	0.079	INTRON Eip63E
3R	19313957	3R_19313957_SNP [dm3] 3R_23488235_SNP [dm6]	A	T	5.144e^-5	0.079	SYNONYMOUS_CODING Ir94h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21270624	3R_21270624_SNP [dm3] 3R_25444902_SNP [dm6]	A	G	5.144e^-5	0.079	INTRON Fur1
3R	21947649	3R_21947649_SNP [dm3] 3R_26121927_SNP [dm6]	T	A	5.144e^-5	0.079	INTRON CG31324
3R	22700676	3R_22700676_SNP [dm3] 3R_26874954_SNP [dm6]	T	C	5.144e^-5	0.079	SYNONYMOUS_CODING Rb97D UPSTREAM ms_3_K81	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5001836	X_5001836_SNP [dm3] X_5107803_SNP [dm6]	A	G	5.144e^-5	0.079	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21791505	3R_21791505_SNP [dm3] 3R_25965783_SNP [dm6]	G	C	5.148e^-5	0.079	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10748564	2L_10748564_INS [dm3] 2L_10748564_INS [dm6]	G	GGCCAGCAG	5.159e^-5	0.079	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1767138	X_1767138_SNP [dm3] X_1873105_SNP [dm6]	G	T	5.179e^-5	0.079	SYNONYMOUS_CODING Pgam5 UPSTREAM Vps26 DOWNSTREAM CG14803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	16168306	X_16168306_SNP [dm3] X_16274273_SNP [dm6]	C	T	5.186e^-5	0.079	DOWNSTREAM Mfe2 INTRON kat80
3R	25025508	3R_25025508_SNP [dm3] 3R_29199786_SNP [dm6]	G	A	5.223e^-5	0.079	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9406358	2R_9406358_SNP [dm3] 2R_13518853_SNP [dm6]	T	A	5.240e^-5	0.079	SPLICE_SITE_REGION Vmat SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
2R	9406368	2R_9406368_SNP [dm3] 2R_13518863_SNP [dm6]	A	G	5.240e^-5	0.079	SPLICE_SITE_REGION Vmat INTRON Vmat	TF binding site mE1_TFBS_cad
2R	9406369	2R_9406369_INS [dm3] 2R_13518864_INS [dm6]	G	GGATATA	5.240e^-5	0.079	INTRON Vmat	TF binding site mE1_TFBS_cad
2R	9406371	2R_9406371_SNP [dm3] 2R_13518866_SNP [dm6]	C	G	5.240e^-5	0.079	INTRON Vmat	TF binding site mE1_TFBS_cad
2R	9406372	2R_9406372_SNP [dm3] 2R_13518867_SNP [dm6]	A	T	5.240e^-5	0.079	INTRON Vmat	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

pc_MB_Beta_Thin phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results