DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.034e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1605 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18246158	2R_18246158_SNP [dm3] 2R_22358653_SNP [dm6]	G	A	1.788e^-6	0.95	INTRON Liprin-gamma
X	6388727	X_6388727_SNP [dm3] X_6494694_SNP [dm6]	A	C	2.368e^-6	0.95	INTRON CG42340
2L	6300480	2L_6300480_SNP [dm3] 2L_6300480_SNP [dm6]	G	C	4.650e^-6	0.95	INTRON Ddr
3R	15403647	3R_15403647_SNP [dm3] 3R_19577925_SNP [dm6]	A	C	5.232e^-6	0.95	INTRON Dys
X	2637551	X_2637551_SNP [dm3] X_2743518_SNP [dm6]	G	T	5.357e^-6	0.95	UTR_5_PRIME Syx4 UPSTREAM Syx4 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15403579	3R_15403579_SNP [dm3] 3R_19577857_SNP [dm6]	T	G	5.399e^-6	0.95	INTRON Dys
2R	12286498	2R_12286498_SNP [dm3] 2R_16398993_SNP [dm6]	G	C	5.950e^-6	0.95	UTR_5_PRIME Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2637365	X_2637365_SNP [dm3] X_2743332_SNP [dm6]	A	T	6.576e^-6	0.95	UPSTREAM Syx4 INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15482040	X_15482040_SNP [dm3] X_15588007_SNP [dm6]	C	T	7.611e^-6	0.95	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13379349	2R_13379349_SNP [dm3] 2R_17491844_SNP [dm6]	G	A	7.681e^-6	0.95	SYNONYMOUS_CODING NT5E-2
2L	11400578	2L_11400578_SNP [dm3] 2L_11400578_SNP [dm6]	A	C	8.268e^-6	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7053130	3L_7053130_DEL [dm3] 3L_7060030_DEL [dm6]	GGG	G	1.168e^-5	0.95	UTR_3_PRIME CG8641
3L	10792374	3L_10792374_SNP [dm3] 3L_10799274_SNP [dm6]	A	T	1.223e^-5	0.95	INTERGENIC
2R	18295192	2R_18295192_SNP [dm3] 2R_22407687_SNP [dm6]	A	C	1.236e^-5	0.95	SYNONYMOUS_CODING CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9195161	X_9195161_SNP [dm3] X_9301128_SNP [dm6]	G	A	1.379e^-5	0.95	INTRON lz
3R	22463593	3R_22463593_SNP [dm3] 3R_26637871_SNP [dm6]	A	T	1.455e^-5	0.95	DOWNSTREAM TwdlS INTERGENIC
3R	10059966	3R_10059966_SNP [dm3] 3R_14234244_SNP [dm6]	C	T	1.500e^-5	0.95	INTERGENIC
3L	2352658	3L_2352658_DEL [dm3] 3L_2352658_DEL [dm6]	TGATTGGTC	T	1.502e^-5	0.95	INTERGENIC
X	8790070	X_8790070_SNP [dm3] X_8896037_SNP [dm6]	T	G	1.564e^-5	0.95	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	2352687	3L_2352687_SNP [dm3] 3L_2352687_SNP [dm6]	A	T	1.670e^-5	0.95	INTERGENIC
3L	11623255	3L_11623255_INS [dm3] 3L_11630155_INS [dm6]	A	AACCGC	1.682e^-5	0.95	DOWNSTREAM mir-3642 & 1 other INTRON CG18815
2R	2657127	2R_2657127_SNP [dm3] 2R_6769622_SNP [dm6]	C	T	1.709e^-5	0.95	UTR_5_PRIME Epac INTRON Epac
3L	19955520	3L_19955520_SNP [dm3] 3L_19962420_SNP [dm6]	T	C	1.758e^-5	0.95	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9791701	2R_9791701_SNP [dm3] 2R_13904196_SNP [dm6]	A	T	1.768e^-5	0.95	INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8790058	X_8790058_SNP [dm3] X_8896025_SNP [dm6]	T	G	1.836e^-5	0.95	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3R	19111230	3R_19111230_SNP [dm3] 3R_23285508_SNP [dm6]	C	T	1.837e^-5	0.95	SYNONYMOUS_CODING CG6763 DOWNSTREAM CG17083	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8726228	3L_8726228_DEL [dm3] 3L_8733128_DEL [dm6]	TA	T	1.848e^-5	0.95	UTR_3_PRIME Prm DOWNSTREAM Prm & 1 other
3L	15225713	3L_15225713_SNP [dm3] 3L_15232613_SNP [dm6]	A	G	2.028e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14092206	X_14092206_SNP [dm3] X_14198173_SNP [dm6]	C	T	2.079e^-5	0.95	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_chinmo
3L	15225656	3L_15225656_SNP [dm3] 3L_15232556_SNP [dm6]	T	A	2.176e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7659470	2R_7659470_SNP [dm3] 2R_11771965_SNP [dm6]	C	G	2.228e^-5	0.95	INTRON ths
3R	6379066	3R_6379066_DEL [dm3] 3R_10553344_DEL [dm6]	AA	A	2.238e^-5	0.95	INTRON hth	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10274174	X_10274174_SNP [dm3] X_10380141_SNP [dm6]	G	A	2.243e^-5	0.95	SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site BDTNP1_TFBS_sna
2L	20497335	2L_20497335_SNP [dm3] 2L_20497335_SNP [dm6]	A	G	2.348e^-5	0.95	INTERGENIC
2L	20507465	2L_20507465_SNP [dm3] 2L_20507465_SNP [dm6]	G	T	2.427e^-5	0.95	INTERGENIC
3R	19802857	3R_19802857_SNP [dm3] 3R_23977135_SNP [dm6]	G	A	2.445e^-5	0.95	SYNONYMOUS_CODING CG31140	TF binding site mE1_TFBS_chinmo
3L	557919	3L_557919_SNP [dm3] 3L_557919_SNP [dm6]	A	G	2.473e^-5	0.95	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19955513	3L_19955513_SNP [dm3] 3L_19962413_SNP [dm6]	T	C	2.540e^-5	0.95	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12857772	3L_12857772_SNP [dm3] 3L_12864672_SNP [dm6]	C	A	2.577e^-5	0.95	INTERGENIC
X	2577768	X_2577768_SNP [dm3] X_2683735_SNP [dm6]	G	A	2.632e^-5	0.95	UPSTREAM CG2652 EXON CR44470
X	2577786	X_2577786_SNP [dm3] X_2683753_SNP [dm6]	A	G	2.632e^-5	0.95	UPSTREAM CG2652 EXON CR44470
3L	15225651	3L_15225651_SNP [dm3] 3L_15232551_SNP [dm6]	C	T	2.645e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12285821	2R_12285821_DEL [dm3] 2R_16398316_DEL [dm6]	AA	A	2.651e^-5	0.95	UPSTREAM Sema-2b INTRON Sema-2b	TF binding site mE1_TFBS_cad
2L	11221916	2L_11221916_SNP [dm3] 2L_11221916_SNP [dm6]	C	T	2.658e^-5	0.95	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12857722	3L_12857722_SNP [dm3] 3L_12864622_SNP [dm6]	C	T	2.727e^-5	0.95	INTERGENIC
2L	12181264	2L_12181264_DEL [dm3] 2L_12181264_DEL [dm6]	AATAG	A	2.829e^-5	0.95	INTRON aret
3R	14083815	3R_14083815_SNP [dm3] 3R_18258093_SNP [dm6]	C	T	2.868e^-5	0.95	DOWNSTREAM moi & 1 other INTERGENIC
2L	12181285	2L_12181285_INS [dm3] 2L_12181285_INS [dm6]	C	CGC	2.908e^-5	0.95	INTRON aret
2L	9289912	2L_9289912_SNP [dm3] 2L_9289912_SNP [dm6]	T	C	2.945e^-5	0.95	INTRON Ggamma30A
X	14092242	X_14092242_SNP [dm3] X_14198209_SNP [dm6]	G	A	3.121e^-5	0.95	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_chinmo
3R	19111269	3R_19111269_SNP [dm3] 3R_23285547_SNP [dm6]	C	T	3.198e^-5	0.95	SYNONYMOUS_CODING CG6763 DOWNSTREAM CG17083	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6252928	X_6252928_SNP [dm3] X_6358895_SNP [dm6]	C	T	3.272e^-5	0.95	SPLICE_SITE_REGION kdn INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6300342	2L_6300342_SNP [dm3] 2L_6300342_SNP [dm6]	A	C	3.304e^-5	0.95	INTRON Ddr
3L	12789935	3L_12789935_DEL [dm3] 3L_12796835_DEL [dm6]	TTGT	T	3.381e^-5	0.95	DOWNSTREAM CG42709 INTRON Atg1
2R	14323526	2R_14323526_SNP [dm3] 2R_18436021_SNP [dm6]	T	C	3.546e^-5	0.95	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18295204	2R_18295204_SNP [dm3] 2R_22407699_SNP [dm6]	A	C	3.629e^-5	0.95	SYNONYMOUS_CODING CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15483515	X_15483515_SNP [dm3] X_15589482_SNP [dm6]	T	C	3.703e^-5	0.95	DOWNSTREAM CG8105 INTRON CG9220
2L	11229843	2L_11229843_SNP [dm3] 2L_11229843_SNP [dm6]	T	G	3.813e^-5	0.95	INTRON ab
2R	10366628	2R_10366628_SNP [dm3] 2R_14479123_SNP [dm6]	G	A	3.839e^-5	0.95	INTERGENIC
2L	18204549	2L_18204549_SNP [dm3] 2L_18204549_SNP [dm6]	G	A	3.942e^-5	0.95	SYNONYMOUS_CODING CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	18204558	2L_18204558_SNP [dm3] 2L_18204558_SNP [dm6]	G	A	3.942e^-5	0.95	SYNONYMOUS_CODING CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	20505758	2L_20505758_SNP [dm3] 2L_20505758_SNP [dm6]	G	A	4.004e^-5	0.95	INTERGENIC
3R	16402725	3R_16402725_SNP [dm3] 3R_20577003_SNP [dm6]	A	G	4.010e^-5	0.95	UTR_5_PRIME TFAM UPSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5212035	2L_5212035_SNP [dm3] 2L_5212035_SNP [dm6]	T	C	4.138e^-5	0.95	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
3L	18740968	3L_18740968_SNP [dm3] 3L_18747868_SNP [dm6]	T	G	4.162e^-5	0.95	SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3763932	2L_3763932_SNP [dm3] 2L_3763932_SNP [dm6]	A	G	4.169e^-5	0.95	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3763946	2L_3763946_SNP [dm3] 2L_3763946_SNP [dm6]	T	G	4.169e^-5	0.95	NON_SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14092248	X_14092248_SNP [dm3] X_14198215_SNP [dm6]	T	A	4.201e^-5	0.95	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_chinmo
X	9042834	X_9042834_SNP [dm3] X_9148801_SNP [dm6]	G	A	4.272e^-5	0.95	NON_SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16403328	3R_16403328_SNP [dm3] 3R_20577606_SNP [dm6]	G	A	4.309e^-5	0.95	UPSTREAM TFAM DOWNSTREAM EloB INTRON CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16403335	3R_16403335_SNP [dm3] 3R_20577613_SNP [dm6]	C	T	4.309e^-5	0.95	UPSTREAM TFAM DOWNSTREAM EloB INTRON CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16402912	3R_16402912_SNP [dm3] 3R_20577190_SNP [dm6]	A	G	4.496e^-5	0.95	NON_SYNONYMOUS_CODING CG5412 UPSTREAM TFAM	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18740964	3L_18740964_SNP [dm3] 3L_18747864_SNP [dm6]	A	C	4.674e^-5	0.95	NON_SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18741382	3L_18741382_SNP [dm3] 3L_18748282_SNP [dm6]	G	A	4.674e^-5	0.95	SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5688038	2L_5688038_SNP [dm3] 2L_5688038_SNP [dm6]	T	G	4.736e^-5	0.95	INTERGENIC
3R	11276825	3R_11276825_DEL [dm3] 3R_15451103_DEL [dm6]	AAT	G	4.835e^-5	0.95	INTRON AdamTS-A
3L	18740925	3L_18740925_SNP [dm3] 3L_18747825_SNP [dm6]	C	T	5.086e^-5	0.95	NON_SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4628381	3L_4628381_SNP [dm3] 3L_4628381_SNP [dm6]	C	T	5.210e^-5	0.95	SYNONYMOUS_CODING Rpd3	TF binding site mE1_TFBS_sens
2L	12181451	2L_12181451_SNP [dm3] 2L_12181451_SNP [dm6]	T	C	5.494e^-5	0.95	INTRON aret
3R	16403106	3R_16403106_SNP [dm3] 3R_20577384_SNP [dm6]	G	C	5.544e^-5	0.95	SYNONYMOUS_CODING CG5412 UPSTREAM TFAM DOWNSTREAM EloB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19955581	3L_19955581_SNP [dm3] 3L_19962481_SNP [dm6]	G	T	5.667e^-5	0.95	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2691996	2R_2691996_SNP [dm3] 2R_6804491_SNP [dm6]	A	G	5.703e^-5	0.95	INTERGENIC
2R	10912819	2R_10912819_SNP [dm3] 2R_15025314_SNP [dm6]	T	C	5.857e^-5	0.95	UPSTREAM Obp51a INTRON hbs EXON CR45256	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10059958	3R_10059958_SNP [dm3] 3R_14234236_SNP [dm6]	C	A	5.905e^-5	0.95	INTERGENIC
2L	12145818	2L_12145818_SNP [dm3] 2L_12145818_SNP [dm6]	A	T	6.120e^-5	0.95	INTRON CG31760
3L	7876642	3L_7876642_SNP [dm3] 3L_7883542_SNP [dm6]	C	T	6.280e^-5	0.95	INTRON CG32365
3L	7876645	3L_7876645_SNP [dm3] 3L_7883545_SNP [dm6]	T	A	6.280e^-5	0.95	INTRON CG32365
X	15460011	X_15460011_SNP [dm3] X_15565978_SNP [dm6]	T	A	6.333e^-5	0.95	INTERGENIC
2L	9418526	2L_9418526_SNP [dm3] 2L_9418526_SNP [dm6]	G	A	6.471e^-5	0.95	INTRON Mco1
3L	8810411	3L_8810411_SNP [dm3] 3L_8817311_SNP [dm6]	A	T	6.474e^-5	0.95	INTERGENIC
2R	11554255	2R_11554255_SNP [dm3] 2R_15666750_SNP [dm6]	A	G	6.562e^-5	0.95	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4564929	3R_4564929_SNP [dm3] 3R_8739207_SNP [dm6]	A	C	6.603e^-5	0.95	INTRON CG9801	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10050351	2L_10050351_SNP [dm3] 2L_10050351_SNP [dm6]	T	C	6.816e^-5	0.95	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23652168	3R_23652168_SNP [dm3] 3R_27826446_SNP [dm6]	G	T	6.885e^-5	0.95	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1449079	2L_1449079_SNP [dm3] 2L_1449079_SNP [dm6]	C	T	6.963e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7270406	2L_7270406_INS [dm3] 2L_7270406_INS [dm6]	A	ATATGCACTAAAATAAA...	7.047e^-5	0.95	INTRON Wnt4
2L	7270418	2L_7270418_SNP [dm3] 2L_7270418_SNP [dm6]	A	C	7.047e^-5	0.95	INTRON Wnt4
2L	7270546	2L_7270546_SNP [dm3] 2L_7270546_SNP [dm6]	A	T	7.047e^-5	0.95	INTRON Wnt4
2R	5344714	2R_5344714_SNP [dm3] 2R_9457209_SNP [dm6]	A	G	7.047e^-5	0.95	UPSTREAM Camta INTRON Camta
2R	2663922	2R_2663922_SNP [dm3] 2R_6776417_SNP [dm6]	C	T	7.088e^-5	0.95	UTR_5_PRIME Epac INTRON Epac	TF binding site mE1_TFBS_cad
3R	11265250	3R_11265250_SNP [dm3] 3R_15439528_SNP [dm6]	G	A	7.141e^-5	0.95	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2L	7270408	2L_7270408_SNP [dm3] 2L_7270408_SNP [dm6]	T	A	7.228e^-5	0.95	INTRON Wnt4
3L	9555143	3L_9555143_SNP [dm3] 3L_9562043_SNP [dm6]	C	T	7.270e^-5	0.95	INTRON CG42673
2R	17746424	2R_17746424_SNP [dm3] 2R_21858919_SNP [dm6]	T	G	7.333e^-5	0.95	INTERGENIC
3R	19888465	3R_19888465_SNP [dm3] 3R_24062743_SNP [dm6]	A	T	7.390e^-5	0.95	UTR_3_PRIME SMC1 DOWNSTREAM 4EHP
3L	4552775	3L_4552775_INS [dm3] 3L_4552775_INS [dm6]	G	GG	7.496e^-5	0.95	UTR_3_PRIME CG11357	TF binding site mE1_TFBS_cad
3L	3252627	3L_3252627_SNP [dm3] 3L_3252627_SNP [dm6]	C	A	7.517e^-5	0.95	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi
2R	17000874	2R_17000874_SNP [dm3] 2R_21113369_SNP [dm6]	T	G	7.583e^-5	0.95	INTRON ktub
3L	14911234	3L_14911234_SNP [dm3] 3L_14918134_SNP [dm6]	T	A	7.682e^-5	0.95	INTRON DCX-EMAP
2L	18897119	2L_18897119_SNP [dm3] 2L_18897119_SNP [dm6]	C	A	7.736e^-5	0.95	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20497232	2L_20497232_SNP [dm3] 2L_20497232_SNP [dm6]	A	T	7.736e^-5	0.95	INTERGENIC
2L	20497276	2L_20497276_SNP [dm3] 2L_20497276_SNP [dm6]	C	G	7.736e^-5	0.95	INTERGENIC
2L	20497414	2L_20497414_SNP [dm3] 2L_20497414_SNP [dm6]	A	G	7.736e^-5	0.95	INTERGENIC
2R	17019129	2R_17019129_SNP [dm3] 2R_21131624_SNP [dm6]	C	G	7.736e^-5	0.95	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6682224	2R_6682224_SNP [dm3] 2R_10794719_SNP [dm6]	C	T	7.736e^-5	0.95	INTRON CG33144
2R	6682936	2R_6682936_SNP [dm3] 2R_10795431_SNP [dm6]	T	C	7.736e^-5	0.95	INTRON CG33144	transposable element FlyBase
2R	6683067	2R_6683067_SNP [dm3] 2R_10795562_SNP [dm6]	A	G	7.736e^-5	0.95	INTRON CG33144
2R	8288568	2R_8288568_SNP [dm3] 2R_12401063_SNP [dm6]	C	T	7.736e^-5	0.95	INTERGENIC
X	13937023	X_13937023_SNP [dm3] X_14042990_SNP [dm6]	G	T	7.736e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2317002	3L_2317002_SNP [dm3] 3L_2317002_SNP [dm6]	G	A	7.826e^-5	0.95	DOWNSTREAM CR45427 INTERGENIC
2R	8338047	2R_8338047_SNP [dm3] 2R_12450542_SNP [dm6]	T	A	7.835e^-5	0.95	NON_SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6928012	2R_6928012_SNP [dm3] 2R_11040507_SNP [dm6]	C	T	7.914e^-5	0.95	INTRON luna
2L	11226378	2L_11226378_SNP [dm3] 2L_11226378_SNP [dm6]	C	T	8.009e^-5	0.95	INTRON ab
X	20810716	X_20810716_SNP [dm3] X_20939689_SNP [dm6]	C	T	8.139e^-5	0.95	DOWNSTREAM Npc1b INTERGENIC
3L	13554492	3L_13554492_SNP [dm3] 3L_13561392_SNP [dm6]	A	G	8.152e^-5	0.95	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	8796452	3L_8796452_SNP [dm3] 3L_8803352_SNP [dm6]	C	T	8.275e^-5	0.95	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2L	17876266	2L_17876266_SNP [dm3] 2L_17876266_SNP [dm6]	A	G	8.352e^-5	0.95	INTERGENIC
2L	5881985	2L_5881985_SNP [dm3] 2L_5881985_SNP [dm6]	C	T	8.388e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16964972	2L_16964972_SNP [dm3] 2L_16964972_SNP [dm6]	A	T	8.419e^-5	0.95	UPSTREAM CR45285 INTERGENIC
2L	18896941	2L_18896941_SNP [dm3] 2L_18896941_SNP [dm6]	T	A	8.419e^-5	0.95	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5127628	3R_5127628_INS [dm3] 3R_9301906_INS [dm6]	C	CTCTGC	8.419e^-5	0.95	INTRON CG8861
2R	18298230	2R_18298230_SNP [dm3] 2R_22410725_SNP [dm6]	T	C	8.579e^-5	0.95	SYNONYMOUS_CODING qkr58E-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9168078	2R_9168078_SNP [dm3] 2R_13280573_SNP [dm6]	C	T	8.592e^-5	0.95	INTRON Dh31-R
2R	18295207	2R_18295207_DEL [dm3] 2R_22407702_DEL [dm6]	TGCT	C	8.636e^-5	0.95	UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10912818	2R_10912818_SNP [dm3] 2R_15025313_SNP [dm6]	A	C	8.638e^-5	0.95	UPSTREAM Obp51a INTRON hbs EXON CR45256	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6682949	2R_6682949_SNP [dm3] 2R_10795444_SNP [dm6]	A	G	8.674e^-5	0.95	INTRON CG33144	transposable element FlyBase
2L	18896887	2L_18896887_INS [dm3] 2L_18896887_INS [dm6]	C	AT	8.774e^-5	0.95	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17730698	2R_17730698_SNP [dm3] 2R_21843193_SNP [dm6]	C	T	8.921e^-5	0.95	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10171854	2L_10171854_DEL [dm3] 2L_10171854_DEL [dm6]	AA	A	8.949e^-5	0.95	UPSTREAM CG13137 INTRON CG44153
2R	17004072	2R_17004072_INS [dm3] 2R_21116567_INS [dm6]	T	TA	9.162e^-5	0.95	INTRON ktub
X	4593901	X_4593901_INS [dm3] X_4699868_INS [dm6]	C	CGAA	9.197e^-5	0.95	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
2L	19343611	2L_19343611_SNP [dm3] 2L_19343611_SNP [dm6]	T	C	9.683e^-5	0.95	INTRON dnt
2R	12655510	2R_12655510_SNP [dm3] 2R_16768005_SNP [dm6]	G	T	9.886e^-5	0.95	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
2R	12655555	2R_12655555_SNP [dm3] 2R_16768050_SNP [dm6]	C	T	9.886e^-5	0.95	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
2L	14970588	2L_14970588_SNP [dm3] 2L_14970588_SNP [dm6]	G	A	9.959e^-5	0.95	INTRON CG42313
2L	12355378	2L_12355378_SNP [dm3] 2L_12355378_SNP [dm6]	A	C	9.995e^-5	0.95	INTRON bru-2
2R	18246308	2R_18246308_SNP [dm3] 2R_22358803_SNP [dm6]	T	C	1.000e^-4	0.95	INTRON Liprin-gamma
3L	1190228	3L_1190228_SNP [dm3] 3L_1190228_SNP [dm6]	T	C	1.021e^-4	0.95	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
3L	9511250	3L_9511250_SNP [dm3] 3L_9518150_SNP [dm6]	C	G	1.036e^-4	0.95	INTRON CG33700
3R	1048518	3R_1048518_SNP [dm3] 3R_5222796_SNP [dm6]	A	G	1.038e^-4	0.95	SYNONYMOUS_CODING CG2604	TF binding site mE1_TFBS_chinmo
2L	8323779	2L_8323779_SNP [dm3] 2L_8323779_SNP [dm6]	C	T	1.043e^-4	0.95	INTRON CG7781
2R	6994166	2R_6994166_SNP [dm3] 2R_11106661_SNP [dm6]	A	T	1.068e^-4	0.95	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	14921062	3L_14921062_SNP [dm3] 3L_14927962_SNP [dm6]	C	T	1.073e^-4	0.95	INTRON DCX-EMAP
3R	9841894	3R_9841894_SNP [dm3] 3R_14016172_SNP [dm6]	G	A	1.084e^-4	0.95	INTRON rdx
X	910224	X_910224_SNP [dm3] X_1016191_SNP [dm6]	A	G	1.091e^-4	0.95	NON_SYNONYMOUS_CODING CG11638 INTRON su_w[a]_
3L	19955616	3L_19955616_SNP [dm3] 3L_19962516_SNP [dm6]	C	A	1.092e^-4	0.95	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5097677	2L_5097677_INS [dm3] 2L_5097677_INS [dm6]	A	AA	1.093e^-4	0.95	INTRON CG4230
X	9169942	X_9169942_SNP [dm3] X_9275909_SNP [dm6]	A	T	1.096e^-4	0.95	UTR_3_PRIME c11.1 DOWNSTREAM CG16892
3R	14118972	3R_14118972_SNP [dm3] 3R_18293250_SNP [dm6]	G	T	1.105e^-4	0.95	UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi
3L	18286275	3L_18286275_SNP [dm3] 3L_18293175_SNP [dm6]	C	A	1.106e^-4	0.95	SYNONYMOUS_CODING CG5103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16789433	2R_16789433_INS [dm3] 2R_20901928_INS [dm6]	T	TACAT	1.119e^-4	0.95	INTRON otp
2R	16789446	2R_16789446_DEL [dm3] 2R_20901941_DEL [dm6]	CTTGGC	C	1.119e^-4	0.95	INTRON otp
3R	20600256	3R_20600256_SNP [dm3] 3R_24774534_SNP [dm6]	A	T	1.121e^-4	0.95	INTRON CG42331
2R	16921457	2R_16921457_SNP [dm3] 2R_21033952_SNP [dm6]	A	G	1.124e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3567191	3L_3567191_SNP [dm3] 3L_3567191_SNP [dm6]	G	A	1.143e^-4	0.95	INTRON Eip63E
2L	13741204	2L_13741204_SNP [dm3] 2L_13741204_SNP [dm6]	T	A	1.154e^-4	0.95	INTERGENIC
X	2577782	X_2577782_SNP [dm3] X_2683749_SNP [dm6]	C	A	1.159e^-4	0.95	UPSTREAM CG2652 EXON CR44470
2L	8852866	2L_8852866_SNP [dm3] 2L_8852866_SNP [dm6]	A	T	1.172e^-4	0.95	UPSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12158742	X_12158742_SNP [dm3] X_12264709_SNP [dm6]	T	C	1.175e^-4	0.95	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11961272	2R_11961272_SNP [dm3] 2R_16073767_SNP [dm6]	C	T	1.186e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11961274	2R_11961274_SNP [dm3] 2R_16073769_SNP [dm6]	G	T	1.186e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9690152	2R_9690152_SNP [dm3] 2R_13802647_SNP [dm6]	G	A	1.199e^-4	0.95	INTRON Cpr50Cb
X	8165683	X_8165683_SNP [dm3] X_8271650_SNP [dm6]	A	T	1.199e^-4	0.95	UPSTREAM Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16402149	3R_16402149_SNP [dm3] 3R_20576427_SNP [dm6]	G	A	1.209e^-4	0.95	SYNONYMOUS_CODING TFAM UPSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	14911183	3L_14911183_SNP [dm3] 3L_14918083_SNP [dm6]	C	T	1.215e^-4	0.95	INTRON DCX-EMAP
2R	14142706	2R_14142706_SNP [dm3] 2R_18255201_SNP [dm6]	C	T	1.228e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12107074	2R_12107074_SNP [dm3] 2R_16219569_SNP [dm6]	A	G	1.234e^-4	0.95	UPSTREAM tRNA:CR30239 & 2 others INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7125225	2R_7125225_SNP [dm3] 2R_11237720_SNP [dm6]	G	C	1.239e^-4	0.95	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12212420	2L_12212420_SNP [dm3] 2L_12212420_SNP [dm6]	A	C	1.240e^-4	0.95	INTRON aret
X	10262061	X_10262061_SNP [dm3] X_10368028_SNP [dm6]	T	C	1.244e^-4	0.95	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	557911	3L_557911_SNP [dm3] 3L_557911_SNP [dm6]	A	T	1.249e^-4	0.95	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12856220	3L_12856220_SNP [dm3] 3L_12863120_SNP [dm6]	A	G	1.267e^-4	0.95	UPSTREAM CG10943 INTERGENIC
2L	8105804	2L_8105804_SNP [dm3] 2L_8105804_SNP [dm6]	C	T	1.272e^-4	0.95	SYNONYMOUS_CODING Bsg
3R	9825396	3R_9825396_SNP [dm3] 3R_13999674_SNP [dm6]	T	C	1.274e^-4	0.95	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9825412	3R_9825412_SNP [dm3] 3R_13999690_SNP [dm6]	A	T	1.274e^-4	0.95	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11477028	3L_11477028_SNP [dm3] 3L_11483928_SNP [dm6]	C	A	1.281e^-4	0.95	INTERGENIC
X	6252915	X_6252915_SNP [dm3] X_6358882_SNP [dm6]	C	A	1.282e^-4	0.95	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6252952	X_6252952_SNP [dm3] X_6358919_SNP [dm6]	A	T	1.282e^-4	0.95	SYNONYMOUS_CODING kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18246250	2R_18246250_SNP [dm3] 2R_22358745_SNP [dm6]	T	A	1.284e^-4	0.95	INTRON Liprin-gamma
2R	18246252	2R_18246252_DEL [dm3] 2R_22358747_DEL [dm6]	GTTTGATATTTTATTTTG...	G	1.284e^-4	0.95	INTRON Liprin-gamma
2L	12522089	2L_12522089_SNP [dm3] 2L_12522089_SNP [dm6]	C	A	1.290e^-4	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	16880148	X_16880148_SNP [dm3] X_16986115_SNP [dm6]	C	A	1.322e^-4	0.95	INTRON CG45002
2R	17616474	2R_17616474_SNP [dm3] 2R_21728969_SNP [dm6]	A	G	1.323e^-4	0.95	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11961280	2R_11961280_SNP [dm3] 2R_16073775_SNP [dm6]	G	A	1.325e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14156367	3L_14156367_SNP [dm3] 3L_14163267_SNP [dm6]	T	A	1.326e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	2664606	2R_2664606_SNP [dm3] 2R_6777101_SNP [dm6]	G	C	1.327e^-4	0.95	UPSTREAM Epac INTRON Epac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21290982	3R_21290982_SNP [dm3] 3R_25465260_SNP [dm6]	C	T	1.333e^-4	0.95	INTRON Fur1
X	15748936	X_15748936_SNP [dm3] X_15854903_SNP [dm6]	T	C	1.333e^-4	0.95	UTR_3_PRIME CG15914 & 1 other
3L	20514465	3L_20514465_SNP [dm3] 3L_20521365_SNP [dm6]	C	T	1.346e^-4	0.95	UPSTREAM mTerf3 INTRON CG5104	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11957359	2R_11957359_SNP [dm3] 2R_16069854_SNP [dm6]	A	C	1.353e^-4	0.95	INTERGENIC
2L	20100935	2L_20100935_SNP [dm3] 2L_20100935_SNP [dm6]	C	A	1.356e^-4	0.95	INTRON Kua
2R	15085703	2R_15085703_SNP [dm3] 2R_19198198_SNP [dm6]	A	G	1.378e^-4	0.95	INTRON hppy
2R	15085709	2R_15085709_SNP [dm3] 2R_19198204_SNP [dm6]	A	G	1.378e^-4	0.95	INTRON hppy
3R	10936282	3R_10936282_SNP [dm3] 3R_15110560_SNP [dm6]	A	G	1.380e^-4	0.95	INTRON CG42788
2L	16969567	2L_16969567_SNP [dm3] 2L_16969567_SNP [dm6]	G	A	1.384e^-4	0.95	INTERGENIC
X	20442321	X_20442321_SNP [dm3] X_20571294_SNP [dm6]	C	T	1.397e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15359396	3L_15359396_SNP [dm3] 3L_15366296_SNP [dm6]	A	T	1.404e^-4	0.95	INTERGENIC
3R	20539673	3R_20539673_SNP [dm3] 3R_24713951_SNP [dm6]	C	T	1.404e^-4	0.95	UPSTREAM CG13627 INTRON CG13627
2L	15067355	2L_15067355_SNP [dm3] 2L_15067355_SNP [dm6]	C	A	1.406e^-4	0.95	SYNONYMOUS_CODING vig INTRON vas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18137710	3R_18137710_SNP [dm3] 3R_22311988_SNP [dm6]	A	G	1.406e^-4	0.95	SYNONYMOUS_CODING CG34377
2L	8002953	2L_8002953_SNP [dm3] 2L_8002953_SNP [dm6]	C	T	1.406e^-4	0.95	INTRON Wwox
3L	11023708	3L_11023708_SNP [dm3] 3L_11030608_SNP [dm6]	A	C	1.427e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20868880	X_20868880_SNP [dm3] X_20997853_SNP [dm6]	G	A	1.437e^-4	0.95	INTERGENIC
2R	10465613	2R_10465613_SNP [dm3] 2R_14578108_SNP [dm6]	T	A	1.442e^-4	0.95	INTRON ttv
X	12194155	X_12194155_SNP [dm3] X_12300122_SNP [dm6]	A	G	1.444e^-4	0.95	INTRON Ten-a
3R	22698483	3R_22698483_SNP [dm3] 3R_26872761_SNP [dm6]	A	T	1.444e^-4	0.95	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D
3R	22698514	3R_22698514_INS [dm3] 3R_26872792_INS [dm6]	A	CGT	1.444e^-4	0.95	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D
X	15553186	X_15553186_SNP [dm3] X_15659153_SNP [dm6]	G	A	1.448e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	10499239	3L_10499239_INS [dm3] 3L_10506139_INS [dm6]	A	AG	1.468e^-4	0.95	UTR_5_PRIME A2bp1
2R	17486295	2R_17486295_SNP [dm3] 2R_21598790_SNP [dm6]	C	T	1.476e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16403169	3R_16403169_SNP [dm3] 3R_20577447_SNP [dm6]	T	C	1.490e^-4	0.95	SYNONYMOUS_CODING CG5412 UPSTREAM TFAM DOWNSTREAM EloB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9743740	X_9743740_INS [dm3] X_9849707_INS [dm6]	G	GAG	1.495e^-4	0.95	UTR_3_PRIME CG32698 DOWNSTREAM CG32698
X	9743896	X_9743896_SNP [dm3] X_9849863_SNP [dm6]	C	T	1.495e^-4	0.95	UTR_3_PRIME CG32698 DOWNSTREAM CG32698
X	2634892	X_2634892_SNP [dm3] X_2740859_SNP [dm6]	A	G	1.500e^-4	0.95	UTR_5_PRIME kirre INTRON Syx4 & 1 other
2L	19100492	2L_19100492_SNP [dm3] 2L_19100492_SNP [dm6]	A	C	1.501e^-4	0.95	INTRON Lim3
2L	9290312	2L_9290312_INS [dm3] 2L_9290312_INS [dm6]	A	AAAGAA	1.505e^-4	0.95	INTRON Ggamma30A
X	12158748	X_12158748_SNP [dm3] X_12264715_SNP [dm6]	A	T	1.507e^-4	0.95	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23652199	3R_23652199_SNP [dm3] 3R_27826477_SNP [dm6]	T	A	1.510e^-4	0.95	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19223584	3R_19223584_SNP [dm3] 3R_23397862_SNP [dm6]	C	T	1.515e^-4	0.95	INTERGENIC
X	15667142	X_15667142_SNP [dm3] X_15773109_SNP [dm6]	T	A	1.543e^-4	0.95	UPSTREAM CG43672 DOWNSTREAM CG33172 INTERGENIC
2R	15043769	2R_15043769_SNP [dm3] 2R_19156264_SNP [dm6]	C	T	1.555e^-4	0.95	NON_SYNONYMOUS_CODING ena INTRON ena	TF binding site mE1_TFBS_sens
X	5897160	X_5897160_SNP [dm3] X_6003127_SNP [dm6]	T	G	1.555e^-4	0.95	INTRON CR44498
X	15249982	X_15249982_SNP [dm3] X_15355949_SNP [dm6]	C	T	1.569e^-4	0.95	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19645096	2R_19645096_SNP [dm3] 2R_23757573_SNP [dm6]	A	G	1.574e^-4	0.95	INTRON CG9850
X	8769932	X_8769932_SNP [dm3] X_8875899_SNP [dm6]	G	A	1.582e^-4	0.95	UTR_5_PRIME Moe INTRON Moe
X	8769933	X_8769933_SNP [dm3] X_8875900_SNP [dm6]	C	A	1.582e^-4	0.95	UTR_5_PRIME Moe INTRON Moe
X	8769938	X_8769938_SNP [dm3] X_8875905_SNP [dm6]	T	C	1.582e^-4	0.95	START_GAINED Moe UTR_5_PRIME Moe INTRON Moe
X	8769948	X_8769948_SNP [dm3] X_8875915_SNP [dm6]	A	G	1.582e^-4	0.95	UTR_5_PRIME Moe INTRON Moe
3L	4552784	3L_4552784_SNP [dm3] 3L_4552784_SNP [dm6]	C	G	1.612e^-4	0.95	UTR_3_PRIME CG11357	TF binding site mE1_TFBS_cad
X	6110234	X_6110234_DEL [dm3] X_6216201_DEL [dm6]	GG	G	1.612e^-4	0.95	INTERGENIC
3R	10781722	3R_10781722_SNP [dm3] 3R_14956000_SNP [dm6]	A	T	1.618e^-4	0.95	INTERGENIC
2L	13313475	2L_13313475_SNP [dm3] 2L_13313475_SNP [dm6]	T	C	1.623e^-4	0.95	INTRON CG43778
3R	22989267	3R_22989267_SNP [dm3] 3R_27163545_SNP [dm6]	T	A	1.636e^-4	0.95	DOWNSTREAM CG5909 INTRON ppk31
2R	12285807	2R_12285807_SNP [dm3] 2R_16398302_SNP [dm6]	A	C	1.637e^-4	0.95	UPSTREAM Sema-2b INTRON Sema-2b	TF binding site mE1_TFBS_cad
X	12132420	X_12132420_SNP [dm3] X_12238387_SNP [dm6]	G	A	1.640e^-4	0.95	INTRON Ten-a
3R	15310674	3R_15310674_SNP [dm3] 3R_19484952_SNP [dm6]	G	T	1.642e^-4	0.95	SPLICE_SITE_REGION Dys INTRON Dys
3L	18741496	3L_18741496_SNP [dm3] 3L_18748396_SNP [dm6]	T	A	1.648e^-4	0.95	UPSTREAM Atg3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21475830	3R_21475830_SNP [dm3] 3R_25650108_SNP [dm6]	G	A	1.665e^-4	0.95	UTR_3_PRIME jigr1	TF binding site mE1_TFBS_cad
3L	11392982	3L_11392982_SNP [dm3] 3L_11399882_SNP [dm6]	C	A	1.669e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15005662	2R_15005662_SNP [dm3] 2R_19118157_SNP [dm6]	G	T	1.673e^-4	0.95	SYNONYMOUS_CODING 5-HT1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9793131	2R_9793131_SNP [dm3] 2R_13905626_SNP [dm6]	C	T	1.686e^-4	0.95	INTRON shot
2R	18191858	2R_18191858_SNP [dm3] 2R_22304353_SNP [dm6]	T	C	1.692e^-4	0.95	INTRON wdp
2L	6276963	2L_6276963_SNP [dm3] 2L_6276963_SNP [dm6]	C	T	1.697e^-4	0.95	INTRON Ddr
2L	19976742	2L_19976742_DEL [dm3] 2L_19976742_DEL [dm6]	TT	T	1.704e^-4	0.95	INTRON CG43861
X	8789166	X_8789166_SNP [dm3] X_8895133_SNP [dm6]	C	T	1.712e^-4	0.95	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18243003	2R_18243003_SNP [dm3] 2R_22355498_SNP [dm6]	C	T	1.726e^-4	0.95	UPSTREAM Liprin-gamma INTRON Liprin-gamma
3R	19069030	3R_19069030_SNP [dm3] 3R_23243308_SNP [dm6]	C	A	1.729e^-4	0.95	INTRON CG4467	TF binding site mE1_TFBS_inv
2L	3763794	2L_3763794_SNP [dm3] 2L_3763794_SNP [dm6]	A	G	1.735e^-4	0.95	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10643562	2L_10643562_SNP [dm3] 2L_10643562_SNP [dm6]	A	G	1.740e^-4	0.95	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2R	12655537	2R_12655537_SNP [dm3] 2R_16768032_SNP [dm6]	G	A	1.750e^-4	0.95	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
3L	20517483	3L_20517483_SNP [dm3] 3L_20524383_SNP [dm6]	A	G	1.756e^-4	0.95	SYNONYMOUS_CODING CG4825
3L	18289370	3L_18289370_SNP [dm3] 3L_18296270_SNP [dm6]	G	A	1.769e^-4	0.95	DOWNSTREAM CR43306 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	3962599	X_3962599_SNP [dm3] X_4068566_SNP [dm6]	A	G	1.790e^-4	0.95	INTERGENIC
X	3968031	X_3968031_DEL [dm3] X_4073998_DEL [dm6]	ACATTTC	A	1.800e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3968040	X_3968040_INS [dm3] X_4074007_INS [dm6]	T	TTCTATGAAAT...	1.800e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12108123	2R_12108123_DEL [dm3] 2R_16220618_DEL [dm6]	TT	T	1.809e^-4	0.95	DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2316490	3L_2316490_SNP [dm3] 3L_2316490_SNP [dm6]	C	A	1.813e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
3R	24781188	3R_24781188_SNP [dm3] 3R_28955466_SNP [dm6]	C	T	1.847e^-4	0.95	INTRON CG14521
X	2577498	X_2577498_SNP [dm3] X_2683465_SNP [dm6]	C	A	1.854e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	2577652	X_2577652_SNP [dm3] X_2683619_SNP [dm6]	T	A	1.854e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	3968433	X_3968433_SNP [dm3] X_4074400_SNP [dm6]	T	A	1.866e^-4	0.95	INTERGENIC
2R	7124199	2R_7124199_SNP [dm3] 2R_11236694_SNP [dm6]	A	C	1.869e^-4	0.95	UPSTREAM CG13217 DOWNSTREAM CG13227 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	4593951	X_4593951_INS [dm3] X_4699918_INS [dm6]	T	TGAAT	1.882e^-4	0.95	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
2L	17284003	2L_17284003_SNP [dm3] 2L_17284003_SNP [dm6]	A	C	1.886e^-4	0.95	INTERGENIC
X	3968050	X_3968050_SNP [dm3] X_4074017_SNP [dm6]	C	A	1.916e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7886311	3L_7886311_SNP [dm3] 3L_7893211_SNP [dm6]	T	G	1.917e^-4	0.95	INTRON CG32365
X	8692268	X_8692268_SNP [dm3] X_8798235_SNP [dm6]	A	T	1.922e^-4	0.95	INTRON Lim1
X	12195037	X_12195037_SNP [dm3] X_12301004_SNP [dm6]	A	G	1.925e^-4	0.95	INTRON Ten-a
3R	23652204	3R_23652204_SNP [dm3] 3R_27826482_SNP [dm6]	G	A	1.945e^-4	0.95	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11960573	2R_11960573_SNP [dm3] 2R_16073068_SNP [dm6]	G	C	1.947e^-4	0.95	INTERGENIC
3L	14913572	3L_14913572_SNP [dm3] 3L_14920472_SNP [dm6]	C	G	1.959e^-4	0.95	INTRON DCX-EMAP
3R	20600286	3R_20600286_SNP [dm3] 3R_24774564_SNP [dm6]	A	G	1.961e^-4	0.95	INTRON CG42331
2L	6445802	2L_6445802_SNP [dm3] 2L_6445802_SNP [dm6]	G	A	1.969e^-4	0.95	SPLICE_SITE_REGION CG9527 INTRON CG9527	TF binding site mE1_TFBS_cad
X	11161492	X_11161492_SNP [dm3] X_11267459_SNP [dm6]	C	A	1.986e^-4	0.95	INTRON CG44422
2L	19100189	2L_19100189_SNP [dm3] 2L_19100189_SNP [dm6]	T	G	2.018e^-4	0.95	INTRON Lim3
3L	557904	3L_557904_SNP [dm3] 3L_557904_SNP [dm6]	C	A	2.018e^-4	0.95	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11957274	2R_11957274_SNP [dm3] 2R_16069769_SNP [dm6]	G	A	2.026e^-4	0.95	INTERGENIC
3L	10094296	3L_10094296_SNP [dm3] 3L_10101196_SNP [dm6]	T	G	2.027e^-4	0.95	UPSTREAM CG42826 INTRON dpr6
3R	14804353	3R_14804353_SNP [dm3] 3R_18978631_SNP [dm6]	C	T	2.056e^-4	0.95	DOWNSTREAM Smu1 & 1 other INTRON CG12269
X	8782617	X_8782617_SNP [dm3] X_8888584_SNP [dm6]	A	T	2.058e^-4	0.95	INTRON Moe
2L	8886558	2L_8886558_SNP [dm3] 2L_8886558_SNP [dm6]	T	C	2.068e^-4	0.95	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
X	8769937	X_8769937_SNP [dm3] X_8875904_SNP [dm6]	C	G	2.082e^-4	0.95	UTR_5_PRIME Moe INTRON Moe
2R	12655507	2R_12655507_SNP [dm3] 2R_16768002_SNP [dm6]	A	G	2.097e^-4	0.95	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
X	19990884	X_19990884_SNP [dm3] X_20096851_SNP [dm6]	C	G	2.102e^-4	0.95	UPSTREAM CG42581 INTERGENIC
2L	15438034	2L_15438034_INS [dm3] 2L_15438034_INS [dm6]	A	AGTTTTAACTAAA...	2.102e^-4	0.95	INTERGENIC
2R	17571841	2R_17571841_SNP [dm3] 2R_21684336_SNP [dm6]	A	G	2.110e^-4	0.95	SYNONYMOUS_CODING CG30263 UPSTREAM CG10306	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12950823	2L_12950823_SNP [dm3] 2L_12950823_SNP [dm6]	A	T	2.111e^-4	0.95	INTERGENIC
2R	1404171	2R_1404171_SNP [dm3] 2R_5516666_SNP [dm6]	T	G	2.120e^-4	0.95	INTRON CG30438	transposable element FlyBase
3L	8182890	3L_8182890_SNP [dm3] 3L_8189790_SNP [dm6]	C	T	2.129e^-4	0.95	INTRON Atg18a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4796461	2L_4796461_SNP [dm3] 2L_4796461_SNP [dm6]	G	A	2.136e^-4	0.95	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
X	12194183	X_12194183_SNP [dm3] X_12300150_SNP [dm6]	C	T	2.137e^-4	0.95	INTRON Ten-a
2L	4394430	2L_4394430_SNP [dm3] 2L_4394430_SNP [dm6]	A	G	2.140e^-4	0.95	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1652688	2L_1652688_SNP [dm3] 2L_1652688_SNP [dm6]	T	A	2.144e^-4	0.95	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
X	2636664	X_2636664_SNP [dm3] X_2742631_SNP [dm6]	G	C	2.152e^-4	0.95	NON_SYNONYMOUS_CODING Syx4 UTR_5_PRIME Syx4 INTRON kirre	TF binding site BDTNP1_TFBS_twi
X	2639175	X_2639175_SNP [dm3] X_2745142_SNP [dm6]	G	C	2.152e^-4	0.95	INTRON kirre
X	8096398	X_8096398_DEL [dm3] X_8202365_DEL [dm6]	CCC	C	2.152e^-4	0.95	INTRON sdt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	870170	3L_870170_SNP [dm3] 3L_870170_SNP [dm6]	G	A	2.157e^-4	0.95	SYNONYMOUS_CODING CG12502
3L	2395106	3L_2395106_INS [dm3] 3L_2395106_INS [dm6]	T	TT	2.161e^-4	0.95	INTRON CG45186
3L	2317030	3L_2317030_SNP [dm3] 3L_2317030_SNP [dm6]	C	T	2.168e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
3L	2317108	3L_2317108_SNP [dm3] 3L_2317108_SNP [dm6]	T	C	2.168e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
2L	4394629	2L_4394629_SNP [dm3] 2L_4394629_SNP [dm6]	T	C	2.175e^-4	0.95	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9065953	3L_9065953_SNP [dm3] 3L_9072853_SNP [dm6]	C	A	2.182e^-4	0.95	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	9555112	3L_9555112_SNP [dm3] 3L_9562012_SNP [dm6]	A	G	2.186e^-4	0.95	INTRON CG42673
2R	15136859	2R_15136859_SNP [dm3] 2R_19249354_SNP [dm6]	T	C	2.192e^-4	0.95	UPSTREAM wbl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22291295	3R_22291295_DEL [dm3] 3R_26465573_DEL [dm6]	TT	T	2.194e^-4	0.95	UTR_5_PRIME CG5455 INTRON CG5455
3R	15393852	3R_15393852_SNP [dm3] 3R_19568130_SNP [dm6]	C	G	2.206e^-4	0.95	INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	4468734	3R_4468734_SNP [dm3] 3R_8643012_SNP [dm6]	C	G	2.219e^-4	0.95	UPSTREAM tRNA:Y1:85Ae & 1 other DOWNSTREAM Cyp313b1 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	13926072	2R_13926072_SNP [dm3] 2R_18038567_SNP [dm6]	T	C	2.226e^-4	0.95	INTERGENIC
X	9762482	X_9762482_SNP [dm3] X_9868449_SNP [dm6]	C	T	2.229e^-4	0.95	UTR_5_PRIME CG45060
3L	17626498	3L_17626498_SNP [dm3] 3L_17633398_SNP [dm6]	T	C	2.241e^-4	0.95	UPSTREAM CG7497 & 1 other INTERGENIC
3L	12933558	3L_12933558_SNP [dm3] 3L_12940458_SNP [dm6]	C	G	2.247e^-4	0.95	INTERGENIC
X	910220	X_910220_SNP [dm3] X_1016187_SNP [dm6]	G	A	2.249e^-4	0.95	SYNONYMOUS_CODING CG11638 INTRON su_w[a]_
X	2577730	X_2577730_SNP [dm3] X_2683697_SNP [dm6]	T	C	2.254e^-4	0.95	UPSTREAM CG2652 EXON CR44470
3R	16402257	3R_16402257_SNP [dm3] 3R_20576535_SNP [dm6]	A	G	2.268e^-4	0.95	SYNONYMOUS_CODING TFAM UPSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16906703	3L_16906703_SNP [dm3] 3L_16913603_SNP [dm6]	T	G	2.273e^-4	0.95	INTRON Lmpt
2R	10366653	2R_10366653_SNP [dm3] 2R_14479148_SNP [dm6]	G	A	2.274e^-4	0.95	INTERGENIC
3L	20515722	3L_20515722_SNP [dm3] 3L_20522622_SNP [dm6]	A	G	2.275e^-4	0.95	UTR_3_PRIME CG4825 DOWNSTREAM CG5104
3L	1613644	3L_1613644_SNP [dm3] 3L_1613644_SNP [dm6]	G	A	2.285e^-4	0.95	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14150519	3L_14150519_SNP [dm3] 3L_14157419_SNP [dm6]	T	A	2.291e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
3R	15396008	3R_15396008_SNP [dm3] 3R_19570286_SNP [dm6]	A	C	2.294e^-4	0.95	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	10020909	3L_10020909_SNP [dm3] 3L_10027809_SNP [dm6]	G	A	2.312e^-4	0.95	INTRON dpr6
3L	10020918	3L_10020918_SNP [dm3] 3L_10027818_SNP [dm6]	A	G	2.312e^-4	0.95	INTRON dpr6
3L	10020923	3L_10020923_SNP [dm3] 3L_10027823_SNP [dm6]	G	A	2.312e^-4	0.95	INTRON dpr6
3L	776012	3L_776012_SNP [dm3] 3L_776012_SNP [dm6]	G	A	2.324e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	15395995	3R_15395995_SNP [dm3] 3R_19570273_SNP [dm6]	A	G	2.333e^-4	0.95	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	1530449	3L_1530449_SNP [dm3] 3L_1530449_SNP [dm6]	T	C	2.335e^-4	0.95	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9317585	2L_9317585_SNP [dm3] 2L_9317585_SNP [dm6]	A	G	2.364e^-4	0.95	INTERGENIC
3L	7726988	3L_7726988_SNP [dm3] 3L_7733888_SNP [dm6]	C	A	2.367e^-4	0.95	SYNONYMOUS_CODING Snmp2 INTRON CG32373
2R	7659336	2R_7659336_SNP [dm3] 2R_11771831_SNP [dm6]	T	C	2.373e^-4	0.95	INTRON ths
3L	20602382	3L_20602382_SNP [dm3] 3L_20609282_SNP [dm6]	T	C	2.380e^-4	0.95	INTRON knrl
X	8219217	X_8219217_SNP [dm3] X_8325184_SNP [dm6]	T	G	2.380e^-4	0.95	UTR_5_PRIME CG43695 INTRON nAChRalpha3
3L	9457587	3L_9457587_SNP [dm3] 3L_9464487_SNP [dm6]	G	A	2.384e^-4	0.95	SYNONYMOUS_CODING CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5927559	3L_5927559_SNP [dm3] 3L_5934459_SNP [dm6]	G	T	2.390e^-4	0.95	NON_SYNONYMOUS_CODING CG33993
2R	17004083	2R_17004083_SNP [dm3] 2R_21116578_SNP [dm6]	A	T	2.394e^-4	0.95	INTRON ktub	insulator Insulator_Class_II.mE01
3R	16516810	3R_16516810_SNP [dm3] 3R_20691088_SNP [dm6]	A	C	2.396e^-4	0.95	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13378789	2R_13378789_SNP [dm3] 2R_17491284_SNP [dm6]	C	A	2.421e^-4	0.95	SYNONYMOUS_CODING NT5E-2
3L	9235364	3L_9235364_SNP [dm3] 3L_9242264_SNP [dm6]	G	A	2.422e^-4	0.95	INTERGENIC
2L	7377911	2L_7377911_SNP [dm3] 2L_7377911_SNP [dm6]	T	C	2.432e^-4	0.95	DOWNSTREAM Wnt10 INTRON ninaC
2R	17735903	2R_17735903_SNP [dm3] 2R_21848398_SNP [dm6]	G	A	2.434e^-4	0.95	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10498513	3L_10498513_SNP [dm3] 3L_10505413_SNP [dm6]	A	G	2.439e^-4	0.95	INTRON A2bp1
3L	10498523	3L_10498523_SNP [dm3] 3L_10505423_SNP [dm6]	C	T	2.439e^-4	0.95	INTRON A2bp1
3L	10498525	3L_10498525_SNP [dm3] 3L_10505425_SNP [dm6]	A	T	2.439e^-4	0.95	INTRON A2bp1
3L	10498871	3L_10498871_SNP [dm3] 3L_10505771_SNP [dm6]	T	A	2.439e^-4	0.95	INTRON A2bp1
3L	10498997	3L_10498997_SNP [dm3] 3L_10505897_SNP [dm6]	A	C	2.439e^-4	0.95	INTRON A2bp1
3L	10499042	3L_10499042_SNP [dm3] 3L_10505942_SNP [dm6]	G	A	2.439e^-4	0.95	INTRON A2bp1
3L	10499549	3L_10499549_SNP [dm3] 3L_10506449_SNP [dm6]	C	T	2.439e^-4	0.95	UTR_5_PRIME A2bp1
3L	5071947	3L_5071947_SNP [dm3] 3L_5071947_SNP [dm6]	T	A	2.448e^-4	0.95	INTRON Con
2R	7674258	2R_7674258_SNP [dm3] 2R_11786753_SNP [dm6]	A	T	2.464e^-4	0.95	INTRON ths
3L	20602063	3L_20602063_SNP [dm3] 3L_20608963_SNP [dm6]	G	A	2.466e^-4	0.95	INTRON knrl
2R	17737865	2R_17737865_SNP [dm3] 2R_21850360_SNP [dm6]	C	T	2.485e^-4	0.95	INTERGENIC
X	12195120	X_12195120_SNP [dm3] X_12301087_SNP [dm6]	G	T	2.509e^-4	0.95	INTRON Ten-a
X	15250301	X_15250301_SNP [dm3] X_15356268_SNP [dm6]	C	A	2.511e^-4	0.95	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9047550	2L_9047550_INS [dm3] 2L_9047550_INS [dm6]	T	CGCAATG	2.528e^-4	0.95	INTERGENIC
3L	3250055	3L_3250055_SNP [dm3] 3L_3250055_SNP [dm6]	A	T	2.530e^-4	0.95	UPSTREAM mir-282 EXON CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	15402858	3R_15402858_SNP [dm3] 3R_19577136_SNP [dm6]	C	T	2.542e^-4	0.95	INTRON Dys
3R	19455441	3R_19455441_SNP [dm3] 3R_23629719_SNP [dm6]	T	G	2.551e^-4	0.95	INTRON CG31145
2L	10302026	2L_10302026_SNP [dm3] 2L_10302026_SNP [dm6]	A	C	2.552e^-4	0.95	UPSTREAM CG13138 DOWNSTREAM nmd INTERGENIC
2R	8339474	2R_8339474_SNP [dm3] 2R_12451969_SNP [dm6]	C	T	2.552e^-4	0.95	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3144400	3R_3144400_SNP [dm3] 3R_7318678_SNP [dm6]	A	G	2.557e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16520453	2L_16520453_SNP [dm3] 2L_16520453_SNP [dm6]	A	T	2.560e^-4	0.95	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	15200149	3R_15200149_SNP [dm3] 3R_19374427_SNP [dm6]	C	T	2.563e^-4	0.95	NON_SYNONYMOUS_CODING CG3581 DOWNSTREAM CG31404 INTRON Ino80	TF binding site mE1_TFBS_HSA
X	3967990	X_3967990_SNP [dm3] X_4073957_SNP [dm6]	T	C	2.591e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12522115	2L_12522115_SNP [dm3] 2L_12522115_SNP [dm6]	A	G	2.592e^-4	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4215952	2R_4215952_SNP [dm3] 2R_8328447_SNP [dm6]	T	C	2.597e^-4	0.95	INTRON pdm3
X	4572347	X_4572347_SNP [dm3] X_4678314_SNP [dm6]	A	T	2.605e^-4	0.95	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6685082	2R_6685082_SNP [dm3] 2R_10797577_SNP [dm6]	T	A	2.613e^-4	0.95	INTRON CG33144
X	8096672	X_8096672_SNP [dm3] X_8202639_SNP [dm6]	A	T	2.615e^-4	0.95	INTRON sdt	TF binding site mE1_TFBS_inv
2L	14119681	2L_14119681_SNP [dm3] 2L_14119681_SNP [dm6]	C	T	2.630e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17107560	2R_17107560_SNP [dm3] 2R_21220055_SNP [dm6]	G	A	2.638e^-4	0.95	NON_SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	18399915	3L_18399915_SNP [dm3] 3L_18406815_SNP [dm6]	G	A	2.640e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
3L	5479055	3L_5479055_SNP [dm3] 3L_5485955_SNP [dm6]	T	G	2.641e^-4	0.95	INTERGENIC
X	9756157	X_9756157_SNP [dm3] X_9862124_SNP [dm6]	A	C	2.655e^-4	0.95	INTERGENIC
2R	4589635	2R_4589635_SNP [dm3] 2R_8702130_SNP [dm6]	T	C	2.688e^-4	0.95	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
2R	12545678	2R_12545678_SNP [dm3] 2R_16658173_SNP [dm6]	G	A	2.703e^-4	0.95	INTRON Picot
2R	12545712	2R_12545712_SNP [dm3] 2R_16658207_SNP [dm6]	G	C	2.703e^-4	0.95	INTRON Picot
3L	10019377	3L_10019377_SNP [dm3] 3L_10026277_SNP [dm6]	C	T	2.703e^-4	0.95	INTRON dpr6
3L	7065368	3L_7065368_SNP [dm3] 3L_7072268_SNP [dm6]	G	A	2.703e^-4	0.95	INTRON CG8641
3L	7065375	3L_7065375_INS [dm3] 3L_7072275_INS [dm6]	A	ATAAAAATCAAAAAA...	2.703e^-4	0.95	INTRON CG8641
3R	4949587	3R_4949587_SNP [dm3] 3R_9123865_SNP [dm6]	C	T	2.703e^-4	0.95	INTRON pum
X	13513472	X_13513472_SNP [dm3] X_13619439_SNP [dm6]	G	T	2.703e^-4	0.95	UTR_3_PRIME CG2691 DOWNSTREAM Tango2
3R	4401147	3R_4401147_DEL [dm3] 3R_8575425_DEL [dm6]	TT	T	2.707e^-4	0.95	INTERGENIC
2R	17644126	2R_17644126_SNP [dm3] 2R_21756621_SNP [dm6]	A	C	2.712e^-4	0.95	UPSTREAM Grx-1 INTERGENIC
2L	11229625	2L_11229625_SNP [dm3] 2L_11229625_SNP [dm6]	A	G	2.739e^-4	0.95	INTRON ab	TF binding site mE1_TFBS_HSA
X	9743803	X_9743803_SNP [dm3] X_9849770_SNP [dm6]	C	G	2.748e^-4	0.95	UTR_3_PRIME CG32698 DOWNSTREAM CG32698
2R	889157	2R_889157_SNP [dm3] 2R_5001652_SNP [dm6]	A	G	2.750e^-4	0.95	INTRON Ir41a	transposable element FlyBase
2L	1449521	2L_1449521_SNP [dm3] 2L_1449521_SNP [dm6]	A	C	2.756e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10496849	3L_10496849_SNP [dm3] 3L_10503749_SNP [dm6]	G	T	2.762e^-4	0.95	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2691754	2L_2691754_SNP [dm3] 2L_2691754_SNP [dm6]	C	A	2.771e^-4	0.95	INTRON CG31690
X	15461228	X_15461228_SNP [dm3] X_15567195_SNP [dm6]	G	T	2.783e^-4	0.95	INTERGENIC
X	2639650	X_2639650_SNP [dm3] X_2745617_SNP [dm6]	T	C	2.787e^-4	0.95	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2639696	X_2639696_SNP [dm3] X_2745663_SNP [dm6]	C	A	2.787e^-4	0.95	INTRON kirre
2R	17004076	2R_17004076_SNP [dm3] 2R_21116571_SNP [dm6]	A	C	2.791e^-4	0.95	INTRON ktub
2L	18654119	2L_18654119_SNP [dm3] 2L_18654119_SNP [dm6]	G	A	2.791e^-4	0.95	INTRON MESR3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	7227161	3L_7227161_SNP [dm3] 3L_7234061_SNP [dm6]	C	G	2.797e^-4	0.95	UPSTREAM CG14826 INTERGENIC
2R	13378855	2R_13378855_SNP [dm3] 2R_17491350_SNP [dm6]	G	A	2.818e^-4	0.95	SYNONYMOUS_CODING NT5E-2
2R	6994612	2R_6994612_DEL [dm3] 2R_11107107_DEL [dm6]	CTAAA	G	2.828e^-4	0.95	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6994735	2R_6994735_DEL [dm3] 2R_11107230_DEL [dm6]	ATA	A	2.828e^-4	0.95	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20595878	2L_20595878_SNP [dm3] 2L_20595878_SNP [dm6]	C	T	2.833e^-4	0.95	INTRON CR44909
3L	8245214	3L_8245214_SNP [dm3] 3L_8252114_SNP [dm6]	G	A	2.834e^-4	0.95	INTRON Dscam4
2L	5887991	2L_5887991_SNP [dm3] 2L_5887991_SNP [dm6]	A	G	2.836e^-4	0.95	UPSTREAM CR44578 & 1 other INTERGENIC
2L	11284738	2L_11284738_SNP [dm3] 2L_11284738_SNP [dm6]	A	G	2.853e^-4	0.95	DOWNSTREAM mre11 INTRON Osi21	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23652198	3R_23652198_SNP [dm3] 3R_27826476_SNP [dm6]	C	G	2.854e^-4	0.95	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13843166	2L_13843166_SNP [dm3] 2L_13843166_SNP [dm6]	A	C	2.861e^-4	0.95	SYNONYMOUS_CODING CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4423205	X_4423205_SNP [dm3] X_4529172_SNP [dm6]	T	G	2.864e^-4	0.95	INTRON CR32773
2L	8446470	2L_8446470_SNP [dm3] 2L_8446470_SNP [dm6]	A	T	2.871e^-4	0.95	SYNONYMOUS_CODING U26 UTR_3_PRIME U26 DOWNSTREAM CG31897
3L	12898822	3L_12898822_SNP [dm3] 3L_12905722_SNP [dm6]	C	T	2.877e^-4	0.95	INTERGENIC
3R	19624254	3R_19624254_SNP [dm3] 3R_23798532_SNP [dm6]	T	C	2.902e^-4	0.95	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6207319	X_6207319_SNP [dm3] X_6313286_SNP [dm6]	T	A	2.902e^-4	0.95	INTRON CG15894
X	8788913	X_8788913_SNP [dm3] X_8894880_SNP [dm6]	G	A	2.906e^-4	0.95	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	8333193	2R_8333193_SNP [dm3] 2R_12445688_SNP [dm6]	T	C	2.911e^-4	0.95	INTRON Dyb
3L	4261636	3L_4261636_SNP [dm3] 3L_4261636_SNP [dm6]	G	T	2.932e^-4	0.95	UTR_3_PRIME CG11586 & 1 other DOWNSTREAM CG11586	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19370509	2L_19370509_SNP [dm3] 2L_19370509_SNP [dm6]	A	T	2.940e^-4	0.95	UTR_5_PRIME CG17349
X	7690672	X_7690672_SNP [dm3] X_7796639_SNP [dm6]	G	A	2.940e^-4	0.95	INTERGENIC
2R	18246808	2R_18246808_INS [dm3] 2R_22359303_INS [dm6]	A	AA	2.954e^-4	0.95	INTRON Liprin-gamma
3L	12110312	3L_12110312_DEL [dm3] 3L_12117212_DEL [dm6]	TAGT	T	2.979e^-4	0.95	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_dl
3L	17125380	3L_17125380_SNP [dm3] 3L_17132280_SNP [dm6]	G	A	2.980e^-4	0.95	INTRON Rbp6
2R	4771074	2R_4771074_SNP [dm3] 2R_8883569_SNP [dm6]	A	T	2.989e^-4	0.95	INTRON RyR	TF binding site mE1_TFBS_cad
2R	4771153	2R_4771153_SNP [dm3] 2R_8883648_SNP [dm6]	G	T	2.989e^-4	0.95	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad
3R	19111827	3R_19111827_SNP [dm3] 3R_23286105_SNP [dm6]	G	A	3.009e^-4	0.95	UTR_3_PRIME CG17083 DOWNSTREAM CG6763	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19111872	3R_19111872_SNP [dm3] 3R_23286150_SNP [dm6]	A	T	3.009e^-4	0.95	UTR_3_PRIME CG17083 DOWNSTREAM CG6763	TF binding site mE1_TFBS_chinmo
2L	13842402	2L_13842402_SNP [dm3] 2L_13842402_SNP [dm6]	G	A	3.023e^-4	0.95	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2R	19391090	2R_19391090_SNP [dm3] 2R_23503567_SNP [dm6]	C	T	3.031e^-4	0.95	SYNONYMOUS_CODING CG13559
3R	16821401	3R_16821401_DEL [dm3] 3R_20995679_DEL [dm6]	AACATGGCTTCAA...	A	3.041e^-4	0.95	INTRON Calx
3L	17431409	3L_17431409_SNP [dm3] 3L_17438309_SNP [dm6]	A	G	3.054e^-4	0.95	DOWNSTREAM CG32176 INTERGENIC
2R	17318824	2R_17318824_SNP [dm3] 2R_21431319_SNP [dm6]	T	C	3.072e^-4	0.95	INTRON Sdc
2R	12107137	2R_12107137_SNP [dm3] 2R_16219632_SNP [dm6]	G	C	3.086e^-4	0.95	UPSTREAM tRNA:CR30239 & 2 others INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15463877	X_15463877_SNP [dm3] X_15569844_SNP [dm6]	A	T	3.087e^-4	0.95	SYNONYMOUS_CODING CG7860 DOWNSTREAM CG15643	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	19950277	3L_19950277_SNP [dm3] 3L_19957177_SNP [dm6]	A	G	3.095e^-4	0.95	INTRON Ac76E
2L	20380090	2L_20380090_DEL [dm3] 2L_20380090_DEL [dm6]	ATGCTA	A	3.122e^-4	0.95	INTRON CG16798
2R	2698367	2R_2698367_SNP [dm3] 2R_6810862_SNP [dm6]	A	C	3.124e^-4	0.95	UPSTREAM koi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10498460	3L_10498460_SNP [dm3] 3L_10505360_SNP [dm6]	G	T	3.148e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498606	3L_10498606_SNP [dm3] 3L_10505506_SNP [dm6]	T	A	3.148e^-4	0.95	INTRON A2bp1
2R	18246013	2R_18246013_SNP [dm3] 2R_22358508_SNP [dm6]	G	A	3.150e^-4	0.95	INTRON Liprin-gamma
3R	15393853	3R_15393853_SNP [dm3] 3R_19568131_SNP [dm6]	T	A	3.170e^-4	0.95	INTRON Dys	TF binding site BDTNP1_TFBS_z
3L	4552879	3L_4552879_SNP [dm3] 3L_4552879_SNP [dm6]	A	G	3.179e^-4	0.95	UTR_3_PRIME CG11357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_run
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	3.183e^-4	0.95	INTRON Mef2
3L	5872298	3L_5872298_SNP [dm3] 3L_5879198_SNP [dm6]	C	T	3.194e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6722508	3R_6722508_SNP [dm3] 3R_10896786_SNP [dm6]	G	T	3.205e^-4	0.95	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22473801	3R_22473801_SNP [dm3] 3R_26648079_SNP [dm6]	A	G	3.210e^-4	0.95	UTR_3_PRIME beat-VII
3R	16403280	3R_16403280_SNP [dm3] 3R_20577558_SNP [dm6]	T	C	3.213e^-4	0.95	SYNONYMOUS_CODING CG5412 UPSTREAM TFAM DOWNSTREAM EloB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10743285	3R_10743285_SNP [dm3] 3R_14917563_SNP [dm6]	C	T	3.246e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
X	15459679	X_15459679_SNP [dm3] X_15565646_SNP [dm6]	A	G	3.247e^-4	0.95	INTERGENIC
2R	6526611	2R_6526611_SNP [dm3] 2R_10639106_SNP [dm6]	C	T	3.255e^-4	0.95	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8672362	2R_8672362_SNP [dm3] 2R_12784857_SNP [dm6]	G	A	3.258e^-4	0.95	INTRON sca & 1 other	regulatory region REDfly_CRMs
2R	12107134	2R_12107134_SNP [dm3] 2R_16219629_SNP [dm6]	C	T	3.274e^-4	0.95	UPSTREAM tRNA:CR30239 & 2 others INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17623127	3L_17623127_SNP [dm3] 3L_17630027_SNP [dm6]	G	A	3.275e^-4	0.95	UTR_3_PRIME CG7510
X	17675584	X_17675584_SNP [dm3] X_17781551_SNP [dm6]	T	C	3.290e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10404103	X_10404103_SNP [dm3] X_10510070_SNP [dm6]	A	G	3.301e^-4	0.95	INTRON spri
X	4594168	X_4594168_SNP [dm3] X_4700135_SNP [dm6]	G	A	3.317e^-4	0.95	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
3L	16926258	3L_16926258_SNP [dm3] 3L_16933158_SNP [dm6]	C	T	3.325e^-4	0.95	INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	4952739	3R_4952739_SNP [dm3] 3R_9127017_SNP [dm6]	G	C	3.330e^-4	0.95	INTRON pum
3R	4952758	3R_4952758_SNP [dm3] 3R_9127036_SNP [dm6]	T	G	3.330e^-4	0.95	INTRON pum
3R	4952771	3R_4952771_SNP [dm3] 3R_9127049_SNP [dm6]	A	G	3.330e^-4	0.95	INTRON pum
3R	4952780	3R_4952780_SNP [dm3] 3R_9127058_SNP [dm6]	C	T	3.330e^-4	0.95	INTRON pum
3L	5281405	3L_5281405_SNP [dm3] 3L_5288305_SNP [dm6]	A	T	3.332e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17629002	3L_17629002_SNP [dm3] 3L_17635902_SNP [dm6]	A	T	3.340e^-4	0.95	INTRON CG7497
2L	17861686	2L_17861686_SNP [dm3] 2L_17861686_SNP [dm6]	A	C	3.353e^-4	0.95	INTRON CadN2
2R	17159620	2R_17159620_SNP [dm3] 2R_21272115_SNP [dm6]	C	T	3.354e^-4	0.95	INTRON Rgk3
X	12132407	X_12132407_SNP [dm3] X_12238374_SNP [dm6]	G	A	3.361e^-4	0.95	INTRON Ten-a
2L	4390088	2L_4390088_SNP [dm3] 2L_4390088_SNP [dm6]	G	A	3.370e^-4	0.95	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4793304	2L_4793304_SNP [dm3] 2L_4793304_SNP [dm6]	A	G	3.388e^-4	0.95	INTRON CG15630
3R	26536885	3R_26536885_SNP [dm3] 3R_30711163_SNP [dm6]	T	A	3.389e^-4	0.95	INTERGENIC
3R	26984769	3R_26984769_SNP [dm3] 3R_31159047_SNP [dm6]	G	A	3.395e^-4	0.95	INTRON Gycbeta100B & 1 other
3L	18736843	3L_18736843_SNP [dm3] 3L_18743743_SNP [dm6]	T	A	3.408e^-4	0.95	UPSTREAM CG6885 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	10530315	X_10530315_SNP [dm3] X_10636282_SNP [dm6]	T	G	3.431e^-4	0.95	INTRON X11Lbeta
2L	4390333	2L_4390333_SNP [dm3] 2L_4390333_SNP [dm6]	C	G	3.433e^-4	0.95	SYNONYMOUS_CODING Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9042752	X_9042752_SNP [dm3] X_9148719_SNP [dm6]	C	T	3.441e^-4	0.95	SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18856726	2R_18856726_INS [dm3] 2R_22969203_INS [dm6]	T	TT	3.445e^-4	0.95	INTERGENIC
3L	3630215	3L_3630215_SNP [dm3] 3L_3630215_SNP [dm6]	G	A	3.453e^-4	0.95	INTRON dar1
3R	21290915	3R_21290915_SNP [dm3] 3R_25465193_SNP [dm6]	C	G	3.462e^-4	0.95	INTRON Fur1
3L	7893176	3L_7893176_SNP [dm3] 3L_7900076_SNP [dm6]	G	A	3.463e^-4	0.95	SPLICE_SITE_REGION pbl UPSTREAM pbl INTRON pbl
3L	5073551	3L_5073551_SNP [dm3] 3L_5073551_SNP [dm6]	G	A	3.501e^-4	0.95	INTRON Con
X	16592285	X_16592285_SNP [dm3] X_16698252_SNP [dm6]	A	T	3.503e^-4	0.95	DOWNSTREAM CG9676 INTRON CG4678
3L	12890183	3L_12890183_SNP [dm3] 3L_12897083_SNP [dm6]	T	C	3.506e^-4	0.95	INTERGENIC
3L	10283487	3L_10283487_SNP [dm3] 3L_10290387_SNP [dm6]	C	T	3.512e^-4	0.95	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	17859176	2L_17859176_SNP [dm3] 2L_17859176_SNP [dm6]	G	A	3.517e^-4	0.95	INTRON CadN2
2L	4408841	2L_4408841_SNP [dm3] 2L_4408841_SNP [dm6]	C	T	3.521e^-4	0.95	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21290933	3R_21290933_SNP [dm3] 3R_25465211_SNP [dm6]	T	G	3.525e^-4	0.95	INTRON Fur1
2L	816151	2L_816151_SNP [dm3] 2L_816151_SNP [dm6]	A	G	3.526e^-4	0.95	SYNONYMOUS_CODING Pex12 UPSTREAM Saf6 DOWNSTREAM CG15880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	10059368	2L_10059368_SNP [dm3] 2L_10059368_SNP [dm6]	C	T	3.537e^-4	0.95	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14450001	2L_14450001_SNP [dm3] 2L_14450001_SNP [dm6]	T	C	3.538e^-4	0.95	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	7967180	2L_7967180_SNP [dm3] 2L_7967180_SNP [dm6]	C	A	3.538e^-4	0.95	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
3L	8897442	3L_8897442_SNP [dm3] 3L_8904342_SNP [dm6]	G	A	3.538e^-4	0.95	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
3R	4960039	3R_4960039_SNP [dm3] 3R_9134317_SNP [dm6]	G	A	3.538e^-4	0.95	INTRON pum
3L	10496726	3L_10496726_SNP [dm3] 3L_10503626_SNP [dm6]	C	G	3.540e^-4	0.95	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10497005	3L_10497005_SNP [dm3] 3L_10503905_SNP [dm6]	C	T	3.540e^-4	0.95	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10498406	3L_10498406_SNP [dm3] 3L_10505306_SNP [dm6]	A	T	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498409	3L_10498409_SNP [dm3] 3L_10505309_SNP [dm6]	A	G	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498413	3L_10498413_SNP [dm3] 3L_10505313_SNP [dm6]	A	C	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498416	3L_10498416_MNP [dm3] 3L_10505316_MNP [dm6]	TTT	ACA	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498440	3L_10498440_INS [dm3] 3L_10505340_INS [dm6]	T	TA	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498445	3L_10498445_SNP [dm3] 3L_10505345_SNP [dm6]	G	T	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498446	3L_10498446_SNP [dm3] 3L_10505346_SNP [dm6]	G	A	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498449	3L_10498449_SNP [dm3] 3L_10505349_SNP [dm6]	T	A	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498453	3L_10498453_DEL [dm3] 3L_10505353_DEL [dm6]	AAAATA	T	3.540e^-4	0.95	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10498531	3L_10498531_MNP [dm3] 3L_10505431_MNP [dm6]	CTG	AAC	3.540e^-4	0.95	INTRON A2bp1
3L	10498535	3L_10498535_SNP [dm3] 3L_10505435_SNP [dm6]	T	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498541	3L_10498541_SNP [dm3] 3L_10505441_SNP [dm6]	T	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498544	3L_10498544_SNP [dm3] 3L_10505444_SNP [dm6]	C	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498550	3L_10498550_SNP [dm3] 3L_10505450_SNP [dm6]	G	T	3.540e^-4	0.95	INTRON A2bp1
3L	10498551	3L_10498551_SNP [dm3] 3L_10505451_SNP [dm6]	A	T	3.540e^-4	0.95	INTRON A2bp1
3L	10498554	3L_10498554_SNP [dm3] 3L_10505454_SNP [dm6]	G	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498560	3L_10498560_SNP [dm3] 3L_10505460_SNP [dm6]	C	T	3.540e^-4	0.95	INTRON A2bp1
3L	10498565	3L_10498565_SNP [dm3] 3L_10505465_SNP [dm6]	G	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498600	3L_10498600_SNP [dm3] 3L_10505500_SNP [dm6]	T	C	3.540e^-4	0.95	INTRON A2bp1
3L	10498630	3L_10498630_SNP [dm3] 3L_10505530_SNP [dm6]	A	G	3.540e^-4	0.95	INTRON A2bp1
3L	10498638	3L_10498638_SNP [dm3] 3L_10505538_SNP [dm6]	T	C	3.540e^-4	0.95	INTRON A2bp1
3L	10498700	3L_10498700_SNP [dm3] 3L_10505600_SNP [dm6]	T	C	3.540e^-4	0.95	INTRON A2bp1
3L	10498705	3L_10498705_SNP [dm3] 3L_10505605_SNP [dm6]	C	T	3.540e^-4	0.95	INTRON A2bp1
3L	10498880	3L_10498880_SNP [dm3] 3L_10505780_SNP [dm6]	T	G	3.540e^-4	0.95	INTRON A2bp1
3L	10498953	3L_10498953_MNP [dm3] 3L_10505853_MNP [dm6]	AGGT	TTCA	3.540e^-4	0.95	INTRON A2bp1
3L	10498958	3L_10498958_MNP [dm3] 3L_10505858_MNP [dm6]	TTCT	AGAA	3.540e^-4	0.95	INTRON A2bp1
3L	10498963	3L_10498963_SNP [dm3] 3L_10505863_SNP [dm6]	T	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498972	3L_10498972_SNP [dm3] 3L_10505872_SNP [dm6]	T	A	3.540e^-4	0.95	INTRON A2bp1
3L	10498987	3L_10498987_SNP [dm3] 3L_10505887_SNP [dm6]	G	C	3.540e^-4	0.95	INTRON A2bp1
3L	10499505	3L_10499505_SNP [dm3] 3L_10506405_SNP [dm6]	A	T	3.540e^-4	0.95	UTR_5_PRIME A2bp1
X	22104297	X_22104297_DEL [dm3] X_22702461_DEL [dm6]	TT	T	3.559e^-4	0.95	INTRON CR44997	transposable element FlyBase
2L	7860163	2L_7860163_SNP [dm3] 2L_7860163_SNP [dm6]	T	G	3.568e^-4	0.95	DOWNSTREAM lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
3L	10499047	3L_10499047_SNP [dm3] 3L_10505947_SNP [dm6]	C	T	3.568e^-4	0.95	INTRON A2bp1
3R	20566095	3R_20566095_SNP [dm3] 3R_24740373_SNP [dm6]	C	T	3.568e^-4	0.95	INTRON tok
2R	9157160	2R_9157160_SNP [dm3] 2R_13269655_SNP [dm6]	T	C	3.579e^-4	0.95	INTRON Dh31-R
X	12182342	X_12182342_INS [dm3] X_12288309_INS [dm6]	A	AA	3.600e^-4	0.95	INTRON Ten-a
3L	8896618	3L_8896618_INS [dm3] 3L_8903518_INS [dm6]	A	AA	3.605e^-4	0.95	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2R	17004078	2R_17004078_INS [dm3] 2R_21116573_INS [dm6]	T	TATGT	3.617e^-4	0.95	INTRON ktub
3L	3093542	3L_3093542_SNP [dm3] 3L_3093542_SNP [dm6]	G	A	3.618e^-4	0.95	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3164800	X_3164800_INS [dm3] X_3270767_INS [dm6]	T	TT	3.623e^-4	0.95	INTRON dnc
2L	13994421	2L_13994421_SNP [dm3] 2L_13994421_SNP [dm6]	T	A	3.642e^-4	0.95	INTRON rk
2L	6238736	2L_6238736_SNP [dm3] 2L_6238736_SNP [dm6]	T	G	3.642e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	11628627	3L_11628627_SNP [dm3] 3L_11635527_SNP [dm6]	C	T	3.642e^-4	0.95	INTRON CG32091
3L	7447013	3L_7447013_SNP [dm3] 3L_7453913_SNP [dm6]	C	T	3.642e^-4	0.95	UTR_3_PRIME CG42458
3R	2796756	3R_2796756_SNP [dm3] 3R_6971034_SNP [dm6]	A	T	3.642e^-4	0.95	INTRON Antp
3R	3117911	3R_3117911_SNP [dm3] 3R_7292189_SNP [dm6]	T	C	3.642e^-4	0.95	INTRON rn
3R	4558075	3R_4558075_DEL [dm3] 3R_8732353_DEL [dm6]	AG	A	3.642e^-4	0.95	UPSTREAM M1BP INTRON CG8202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5152238	3R_5152238_SNP [dm3] 3R_9326516_SNP [dm6]	A	G	3.642e^-4	0.95	INTRON CG8861
3R	5152392	3R_5152392_SNP [dm3] 3R_9326670_SNP [dm6]	G	C	3.642e^-4	0.95	INTRON CG8861
3R	5152396	3R_5152396_SNP [dm3] 3R_9326674_SNP [dm6]	A	G	3.642e^-4	0.95	INTRON CG8861
3R	5152951	3R_5152951_SNP [dm3] 3R_9327229_SNP [dm6]	C	G	3.642e^-4	0.95	UTR_5_PRIME CG8861
X	12665860	X_12665860_SNP [dm3] X_12771827_SNP [dm6]	T	A	3.642e^-4	0.95	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2L	13841722	2L_13841722_SNP [dm3] 2L_13841722_SNP [dm6]	G	T	3.644e^-4	0.95	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842654	2L_13842654_SNP [dm3] 2L_13842654_SNP [dm6]	C	A	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842655	2L_13842655_SNP [dm3] 2L_13842655_SNP [dm6]	C	T	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842660	2L_13842660_SNP [dm3] 2L_13842660_SNP [dm6]	G	T	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842663	2L_13842663_MNP [dm3] 2L_13842663_MNP [dm6]	ATA	TGT	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842667	2L_13842667_SNP [dm3] 2L_13842667_SNP [dm6]	G	T	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842679	2L_13842679_SNP [dm3] 2L_13842679_SNP [dm6]	G	A	3.644e^-4	0.95	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	10375492	2L_10375492_SNP [dm3] 2L_10375492_SNP [dm6]	T	G	3.662e^-4	0.95	NON_SYNONYMOUS_CODING CG33303 UPSTREAM dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3546369	3L_3546369_SNP [dm3] 3L_3546369_SNP [dm6]	T	C	3.662e^-4	0.95	INTRON Eip63E
3L	7063942	3L_7063942_SNP [dm3] 3L_7070842_SNP [dm6]	G	A	3.662e^-4	0.95	INTRON CG8641
2L	12374518	2L_12374518_SNP [dm3] 2L_12374518_SNP [dm6]	G	T	3.665e^-4	0.95	INTRON bru-2
3R	15406722	3R_15406722_SNP [dm3] 3R_19581000_SNP [dm6]	A	T	3.673e^-4	0.95	INTRON Dys
3L	9957085	3L_9957085_SNP [dm3] 3L_9963985_SNP [dm6]	T	A	3.675e^-4	0.95	INTRON CG34356
3R	4959503	3R_4959503_SNP [dm3] 3R_9133781_SNP [dm6]	C	A	3.689e^-4	0.95	INTRON pum
2R	17974300	2R_17974300_SNP [dm3] 2R_22086795_SNP [dm6]	C	A	3.697e^-4	0.95	SYNONYMOUS_CODING CG13502 INTRON CG13502
2R	8290867	2R_8290867_SNP [dm3] 2R_12403362_SNP [dm6]	T	A	3.698e^-4	0.95	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz
X	8751935	X_8751935_DEL [dm3] X_8857902_DEL [dm6]	AA	A	3.713e^-4	0.95	INTRON CG12075
X	13506515	X_13506515_SNP [dm3] X_13612482_SNP [dm6]	A	G	3.715e^-4	0.95	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8098177	3L_8098177_SNP [dm3] 3L_8105077_SNP [dm6]	C	G	3.734e^-4	0.95	INTRON Ect4	TF binding site mE1_TFBS_cad
2L	19993403	2L_19993403_SNP [dm3] 2L_19993403_SNP [dm6]	G	C	3.741e^-4	0.95	INTRON CG43861
3R	10744176	3R_10744176_SNP [dm3] 3R_14918454_SNP [dm6]	T	A	3.752e^-4	0.95	UPSTREAM Sdr INTERGENIC
X	13875357	X_13875357_SNP [dm3] X_13981324_SNP [dm6]	A	C	3.757e^-4	0.95	INTRON mamo
2L	20420133	2L_20420133_SNP [dm3] 2L_20420133_SNP [dm6]	G	T	3.763e^-4	0.95	DOWNSTREAM snoRNA:Psi18S-640b & 6 others INTRON Arpc2
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	3.769e^-4	0.95	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19100053	2L_19100053_INS [dm3] 2L_19100053_INS [dm6]	A	AC	3.780e^-4	0.95	INTRON Lim3
2L	7671180	2L_7671180_SNP [dm3] 2L_7671180_SNP [dm6]	A	G	3.781e^-4	0.95	INTRON Slob & 1 other
3L	20505392	3L_20505392_SNP [dm3] 3L_20512292_SNP [dm6]	G	A	3.792e^-4	0.95	SYNONYMOUS_CODING CG32425	TF binding site mE1_TFBS_cad
3R	25223393	3R_25223393_DEL [dm3] 3R_29397671_DEL [dm6]	GGTGTATGT	G	3.793e^-4	0.95	INTRON Ptp99A
3R	17731438	3R_17731438_SNP [dm3] 3R_21905716_SNP [dm6]	C	T	3.810e^-4	0.95	INTRON CG6678	TF binding site mE1_TFBS_chinmo
2R	3252414	2R_3252414_SNP [dm3] 2R_7364909_SNP [dm6]	G	C	3.813e^-4	0.95	INTRON Dscam1
X	5897365	X_5897365_DEL [dm3] X_6003332_DEL [dm6]	GCTGGTGAATTGATACTCGA...	G	3.814e^-4	0.95	INTRON CR44498
3L	8820230	3L_8820230_SNP [dm3] 3L_8827130_SNP [dm6]	A	G	3.829e^-4	0.95	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10616120	2L_10616120_SNP [dm3] 2L_10616120_SNP [dm6]	C	T	3.839e^-4	0.95	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	11221068	2L_11221068_SNP [dm3] 2L_11221068_SNP [dm6]	C	T	3.842e^-4	0.95	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17074227	2R_17074227_SNP [dm3] 2R_21186722_SNP [dm6]	G	C	3.844e^-4	0.95	NON_SYNONYMOUS_CODING tud
3L	13907086	3L_13907086_SNP [dm3] 3L_13913986_SNP [dm6]	A	G	3.845e^-4	0.95	SYNONYMOUS_CODING Rgl INTRON Rgl
2L	12417589	2L_12417589_SNP [dm3] 2L_12417589_SNP [dm6]	T	C	3.858e^-4	0.95	INTRON vir-1
2L	12417592	2L_12417592_SNP [dm3] 2L_12417592_SNP [dm6]	G	C	3.858e^-4	0.95	INTRON vir-1
2R	10366584	2R_10366584_SNP [dm3] 2R_14479079_SNP [dm6]	A	G	3.859e^-4	0.95	INTERGENIC
3R	15064752	3R_15064752_SNP [dm3] 3R_19239030_SNP [dm6]	A	G	3.878e^-4	0.95	INTRON unc79	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	16657609	2R_16657609_SNP [dm3] 2R_20770104_SNP [dm6]	A	G	3.903e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18844859	3L_18844859_SNP [dm3] 3L_18851759_SNP [dm6]	A	T	3.908e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	20811020	X_20811020_SNP [dm3] X_20939993_SNP [dm6]	T	C	3.919e^-4	0.95	DOWNSTREAM Npc1b INTERGENIC
2L	11223549	2L_11223549_SNP [dm3] 2L_11223549_SNP [dm6]	A	G	3.919e^-4	0.95	INTRON ab
2R	8453021	2R_8453021_SNP [dm3] 2R_12565516_SNP [dm6]	G	A	3.929e^-4	0.95	UPSTREAM CG33775 & 1 other INTERGENIC
2R	8453092	2R_8453092_SNP [dm3] 2R_12565587_SNP [dm6]	A	C	3.929e^-4	0.95	UPSTREAM CG33775 & 1 other INTERGENIC
X	20561321	X_20561321_SNP [dm3] X_20690294_SNP [dm6]	C	T	3.960e^-4	0.95	UPSTREAM run DOWNSTREAM CR45610 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	16406523	3R_16406523_SNP [dm3] 3R_20580801_SNP [dm6]	T	C	3.961e^-4	0.95	NON_SYNONYMOUS_CODING CG34008 UPSTREAM EloB DOWNSTREAM Srp14 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	20598848	2L_20598848_SNP [dm3] 2L_20598848_SNP [dm6]	T	C	3.963e^-4	0.95	INTRON CR44909
3L	5098497	3L_5098497_SNP [dm3] 3L_5098497_SNP [dm6]	T	G	3.979e^-4	0.95	EXON CR34047
X	10660712	X_10660712_SNP [dm3] X_10766679_SNP [dm6]	A	G	3.986e^-4	0.95	UPSTREAM Atg8a INTRON Atg8a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10660713	X_10660713_SNP [dm3] X_10766680_SNP [dm6]	T	G	3.986e^-4	0.95	UPSTREAM Atg8a INTRON Atg8a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14069439	2L_14069439_SNP [dm3] 2L_14069439_SNP [dm6]	G	T	3.987e^-4	0.95	INTRON nAChRalpha5
X	5897193	X_5897193_SNP [dm3] X_6003160_SNP [dm6]	T	G	3.995e^-4	0.95	INTRON CR44498
2L	1192187	2L_1192187_SNP [dm3] 2L_1192187_SNP [dm6]	A	C	3.998e^-4	0.95	SYNONYMOUS_CODING CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	781695	X_781695_SNP [dm3] X_887662_SNP [dm6]	G	A	4.016e^-4	0.95	INTRON CG43867
3L	8808798	3L_8808798_SNP [dm3] 3L_8815698_SNP [dm6]	T	G	4.020e^-4	0.95	INTERGENIC
2L	11222394	2L_11222394_INS [dm3] 2L_11222394_INS [dm6]	C	CA	4.024e^-4	0.95	INTRON ab
2L	11222788	2L_11222788_SNP [dm3] 2L_11222788_SNP [dm6]	C	T	4.024e^-4	0.95	INTRON ab
2L	11222790	2L_11222790_DEL [dm3] 2L_11222790_DEL [dm6]	TTTG	T	4.024e^-4	0.95	INTRON ab
2L	11223220	2L_11223220_SNP [dm3] 2L_11223220_SNP [dm6]	C	G	4.024e^-4	0.95	INTRON ab
2L	11223391	2L_11223391_SNP [dm3] 2L_11223391_SNP [dm6]	G	T	4.024e^-4	0.95	INTRON ab
3R	15119131	3R_15119131_SNP [dm3] 3R_19293409_SNP [dm6]	C	T	4.031e^-4	0.95	INTERGENIC
2L	7200859	2L_7200859_SNP [dm3] 2L_7200859_SNP [dm6]	G	T	4.034e^-4	0.95	INTRON CG4502
3R	20486544	3R_20486544_SNP [dm3] 3R_24660822_SNP [dm6]	G	A	4.077e^-4	0.95	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
3L	3740554	3L_3740554_SNP [dm3] 3L_3740554_SNP [dm6]	A	T	4.087e^-4	0.95	INTRON CG32264
2L	11400592	2L_11400592_INS [dm3] 2L_11400592_INS [dm6]	T	TGTATATA	4.091e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11400595	2L_11400595_SNP [dm3] 2L_11400595_SNP [dm6]	A	T	4.091e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11400603	2L_11400603_SNP [dm3] 2L_11400603_SNP [dm6]	C	G	4.091e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11400605	2L_11400605_SNP [dm3] 2L_11400605_SNP [dm6]	G	T	4.091e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	13364932	X_13364932_INS [dm3] X_13470899_INS [dm6]	T	TT	4.109e^-4	0.95	INTRON Neto
2L	15494326	2L_15494326_SNP [dm3] 2L_15494326_SNP [dm6]	T	A	4.119e^-4	0.95	INTERGENIC
2L	7213853	2L_7213853_SNP [dm3] 2L_7213853_SNP [dm6]	C	G	4.126e^-4	0.95	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15769870	3L_15769870_INS [dm3] 3L_15776770_INS [dm6]	T	TT	4.129e^-4	0.95	INTERGENIC
2R	17742114	2R_17742114_SNP [dm3] 2R_21854609_SNP [dm6]	C	T	4.146e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	988699	3R_988699_SNP [dm3] 3R_5162977_SNP [dm6]	T	A	4.155e^-4	0.95	INTRON dpr16
X	13094915	X_13094915_SNP [dm3] X_13200882_SNP [dm6]	G	C	4.157e^-4	0.95	SYNONYMOUS_CODING sno DOWNSTREAM CG44437	TF binding site BDTNP1_TFBS_dl
3L	10020945	3L_10020945_SNP [dm3] 3L_10027845_SNP [dm6]	A	G	4.162e^-4	0.95	INTRON dpr6
3R	1291313	3R_1291313_SNP [dm3] 3R_5465591_SNP [dm6]	C	G	4.171e^-4	0.95	UPSTREAM PEK DOWNSTREAM RpL35A INTERGENIC
2L	5881351	2L_5881351_SNP [dm3] 2L_5881351_SNP [dm6]	G	A	4.188e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12108567	2R_12108567_SNP [dm3] 2R_16221062_SNP [dm6]	C	T	4.196e^-4	0.95	UPSTREAM CR43898 DOWNSTREAM tRNA:CR30240 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	17248478	X_17248478_SNP [dm3] X_17354445_SNP [dm6]	T	A	4.204e^-4	0.95	INTERGENIC
3L	15746112	3L_15746112_SNP [dm3] 3L_15753012_SNP [dm6]	A	G	4.216e^-4	0.95	INTERGENIC
3L	5901609	3L_5901609_SNP [dm3] 3L_5908509_SNP [dm6]	G	T	4.216e^-4	0.95	INTRON CG13288
2R	2675491	2R_2675491_SNP [dm3] 2R_6787986_SNP [dm6]	T	C	4.218e^-4	0.95	INTRON Epac	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10498731	3L_10498731_SNP [dm3] 3L_10505631_SNP [dm6]	G	T	4.222e^-4	0.95	INTRON A2bp1
3L	2316512	3L_2316512_SNP [dm3] 3L_2316512_SNP [dm6]	G	A	4.227e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
2L	13376618	2L_13376618_SNP [dm3] 2L_13376618_SNP [dm6]	G	A	4.234e^-4	0.95	UTR_3_PRIME CG9302 DOWNSTREAM CG6565
3R	14515144	3R_14515144_SNP [dm3] 3R_18689422_SNP [dm6]	A	G	4.236e^-4	0.95	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9066034	3L_9066034_SNP [dm3] 3L_9072934_SNP [dm6]	G	C	4.238e^-4	0.95	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	2317050	3L_2317050_SNP [dm3] 3L_2317050_SNP [dm6]	C	A	4.245e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
3L	2317092	3L_2317092_SNP [dm3] 3L_2317092_SNP [dm6]	G	A	4.245e^-4	0.95	DOWNSTREAM CR45427 INTERGENIC
2L	11203921	2L_11203921_SNP [dm3] 2L_11203921_SNP [dm6]	C	T	4.278e^-4	0.95	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10498511	3L_10498511_SNP [dm3] 3L_10505411_SNP [dm6]	T	G	4.290e^-4	0.95	INTRON A2bp1
3R	6698265	3R_6698265_SNP [dm3] 3R_10872543_SNP [dm6]	A	C	4.305e^-4	0.95	UPSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6698339	3R_6698339_SNP [dm3] 3R_10872617_SNP [dm6]	A	G	4.305e^-4	0.95	UPSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4402742	2R_4402742_SNP [dm3] 2R_8515237_SNP [dm6]	A	G	4.317e^-4	0.95	INTRON mtt
2L	20500528	2L_20500528_SNP [dm3] 2L_20500528_SNP [dm6]	G	T	4.319e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2663067	2R_2663067_SNP [dm3] 2R_6775562_SNP [dm6]	C	T	4.319e^-4	0.95	INTRON Epac
3L	14098629	3L_14098629_SNP [dm3] 3L_14105529_SNP [dm6]	C	T	4.332e^-4	0.95	INTRON Sox21a	TF binding site mE1_TFBS_Kr
2L	3763771	2L_3763771_SNP [dm3] 2L_3763771_SNP [dm6]	A	G	4.334e^-4	0.95	NON_SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14851750	3L_14851750_SNP [dm3] 3L_14858650_SNP [dm6]	C	A	4.342e^-4	0.95	INTRON CG17839
2R	9594322	2R_9594322_SNP [dm3] 2R_13706817_SNP [dm6]	C	A	4.346e^-4	0.95	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8588844	2L_8588844_SNP [dm3] 2L_8588844_SNP [dm6]	G	A	4.347e^-4	0.95	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3L	4940409	3L_4940409_SNP [dm3] 3L_4940409_SNP [dm6]	C	G	4.354e^-4	0.95	INTRON Con	TF binding site mE1_TFBS_chinmo
X	12194311	X_12194311_SNP [dm3] X_12300278_SNP [dm6]	A	G	4.362e^-4	0.95	INTRON Ten-a
2L	5508136	2L_5508136_SNP [dm3] 2L_5508136_SNP [dm6]	C	A	4.370e^-4	0.95	INTERGENIC
2R	12704950	2R_12704950_SNP [dm3] 2R_16817445_SNP [dm6]	T	A	4.374e^-4	0.95	UTR_3_PRIME CG5550 DOWNSTREAM CR43417
2R	7951088	2R_7951088_SNP [dm3] 2R_12063583_SNP [dm6]	G	A	4.392e^-4	0.95	DOWNSTREAM Drep-3 & 1 other INTERGENIC
X	20806958	X_20806958_SNP [dm3] X_20935931_SNP [dm6]	A	G	4.397e^-4	0.95	NON_SYNONYMOUS_CODING Npc1b
3L	8245193	3L_8245193_SNP [dm3] 3L_8252093_SNP [dm6]	G	A	4.398e^-4	0.95	INTRON Dscam4
2R	6685178	2R_6685178_SNP [dm3] 2R_10797673_SNP [dm6]	T	C	4.400e^-4	0.95	INTRON CG33144
3R	22958845	3R_22958845_SNP [dm3] 3R_27133123_SNP [dm6]	C	G	4.400e^-4	0.95	INTRON CG6051
2L	10643561	2L_10643561_SNP [dm3] 2L_10643561_SNP [dm6]	A	T	4.406e^-4	0.95	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
X	9756062	X_9756062_SNP [dm3] X_9862029_SNP [dm6]	C	T	4.410e^-4	0.95	INTERGENIC
2L	11399775	2L_11399775_SNP [dm3] 2L_11399775_SNP [dm6]	A	G	4.424e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
3R	24021865	3R_24021865_SNP [dm3] 3R_28196143_SNP [dm6]	A	T	4.427e^-4	0.95	INTRON CG34354
2L	9045278	2L_9045278_SNP [dm3] 2L_9045278_SNP [dm6]	T	C	4.431e^-4	0.95	INTERGENIC
3L	9262088	3L_9262088_SNP [dm3] 3L_9268988_SNP [dm6]	A	G	4.439e^-4	0.95	SYNONYMOUS_CODING GluRIB
X	8165362	X_8165362_SNP [dm3] X_8271329_SNP [dm6]	C	T	4.453e^-4	0.95	UTR_5_PRIME Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8165364	X_8165364_SNP [dm3] X_8271331_SNP [dm6]	A	T	4.453e^-4	0.95	START_GAINED Corp UTR_5_PRIME Corp DOWNSTREAM CG15343 INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13913593	3L_13913593_DEL [dm3] 3L_13920493_DEL [dm6]	ATATAAATAAA...	A	4.454e^-4	0.95	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	9042758	X_9042758_SNP [dm3] X_9148725_SNP [dm6]	G	C	4.468e^-4	0.95	SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7213861	2L_7213861_DEL [dm3] 2L_7213861_DEL [dm6]	TTATAT	T	4.468e^-4	0.95	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3713221	2L_3713221_SNP [dm3] 2L_3713221_SNP [dm6]	A	C	4.482e^-4	0.95	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6276976	2L_6276976_SNP [dm3] 2L_6276976_SNP [dm6]	G	T	4.492e^-4	0.95	INTRON Ddr
3L	5485295	3L_5485295_SNP [dm3] 3L_5492195_SNP [dm6]	A	T	4.521e^-4	0.95	INTERGENIC
3L	17642620	3L_17642620_INS [dm3] 3L_17649520_INS [dm6]	C	CATC	4.532e^-4	0.95	DOWNSTREAM Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10088339	3L_10088339_SNP [dm3] 3L_10095239_SNP [dm6]	A	G	4.533e^-4	0.95	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2L	15167599	2L_15167599_SNP [dm3] 2L_15167599_SNP [dm6]	C	T	4.534e^-4	0.95	SYNONYMOUS_CODING CG4168
3R	4950391	3R_4950391_SNP [dm3] 3R_9124669_SNP [dm6]	A	G	4.541e^-4	0.95	INTRON pum
2R	7968130	2R_7968130_SNP [dm3] 2R_12080625_SNP [dm6]	A	T	4.555e^-4	0.95	UPSTREAM CG13186 INTERGENIC	TF binding site mE1_TFBS_inv
2R	7968428	2R_7968428_SNP [dm3] 2R_12080923_SNP [dm6]	C	G	4.555e^-4	0.95	UPSTREAM CG13186 INTERGENIC	TF binding site mE1_TFBS_inv
2R	7969026	2R_7969026_SNP [dm3] 2R_12081521_SNP [dm6]	C	G	4.555e^-4	0.95	SYNONYMOUS_CODING CG13186	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7969137	2R_7969137_SNP [dm3] 2R_12081632_SNP [dm6]	C	T	4.555e^-4	0.95	SYNONYMOUS_CODING CG13186	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7970003	2R_7970003_SNP [dm3] 2R_12082498_SNP [dm6]	C	T	4.555e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970010	2R_7970010_SNP [dm3] 2R_12082505_SNP [dm6]	C	T	4.555e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970323	2R_7970323_SNP [dm3] 2R_12082818_SNP [dm6]	C	T	4.555e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
3L	18740982	3L_18740982_SNP [dm3] 3L_18747882_SNP [dm6]	G	A	4.567e^-4	0.95	SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4633419	3L_4633419_SNP [dm3] 3L_4633419_SNP [dm6]	G	C	4.571e^-4	0.95	INTRON axo
2L	11833390	2L_11833390_DEL [dm3] 2L_11833390_DEL [dm6]	AACATTAGT	A	4.573e^-4	0.95	UPSTREAM CG45011 INTRON Pde1c
X	20488107	X_20488107_SNP [dm3] X_20617080_SNP [dm6]	A	T	4.574e^-4	0.95	INTRON RunxA
3L	10802687	3L_10802687_SNP [dm3] 3L_10809587_SNP [dm6]	C	T	4.578e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5727878	3L_5727878_SNP [dm3] 3L_5734778_SNP [dm6]	T	G	4.590e^-4	0.95	INTRON sif
X	17640134	X_17640134_SNP [dm3] X_17746101_SNP [dm6]	T	C	4.598e^-4	0.95	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5435425	2R_5435425_DEL [dm3] 2R_9547920_DEL [dm6]	TGTAT	T	4.599e^-4	0.95	UTR_5_PRIME CG1888 UPSTREAM CG1888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16403531	3R_16403531_SNP [dm3] 3R_20577809_SNP [dm6]	G	A	4.609e^-4	0.95	SYNONYMOUS_CODING CG5412 UPSTREAM TFAM DOWNSTREAM EloB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18906563	2R_18906563_SNP [dm3] 2R_23019040_SNP [dm6]	C	A	4.611e^-4	0.95	INTRON twi & 1 other
2L	13841534	2L_13841534_SNP [dm3] 2L_13841534_SNP [dm6]	A	G	4.636e^-4	0.95	UPSTREAM CG33307 INTRON CenG1A
3R	19111787	3R_19111787_SNP [dm3] 3R_23286065_SNP [dm6]	C	T	4.642e^-4	0.95	DOWNSTREAM CG17083 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19111802	3R_19111802_SNP [dm3] 3R_23286080_SNP [dm6]	A	T	4.642e^-4	0.95	DOWNSTREAM CG17083 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16210957	2L_16210957_SNP [dm3] 2L_16210957_SNP [dm6]	A	C	4.650e^-4	0.95	UPSTREAM CG31819 INTERGENIC
3L	12385849	3L_12385849_SNP [dm3] 3L_12392749_SNP [dm6]	C	G	4.654e^-4	0.95	INTERGENIC
2R	7125638	2R_7125638_SNP [dm3] 2R_11238133_SNP [dm6]	A	G	4.681e^-4	0.95	UTR_3_PRIME CG13216 UPSTREAM CG34224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12791720	3L_12791720_SNP [dm3] 3L_12798620_SNP [dm6]	C	T	4.684e^-4	0.95	INTRON Atg1
3R	6794851	3R_6794851_SNP [dm3] 3R_10969129_SNP [dm6]	T	C	4.693e^-4	0.95	UPSTREAM CR45561 INTERGENIC
2R	15223657	2R_15223657_SNP [dm3] 2R_19336152_SNP [dm6]	G	A	4.702e^-4	0.95	DOWNSTREAM CG34045 INTRON Rgk1
2R	17472714	2R_17472714_SNP [dm3] 2R_21585209_SNP [dm6]	C	T	4.708e^-4	0.95	UTR_3_PRIME CG30222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20380088	2L_20380088_SNP [dm3] 2L_20380088_SNP [dm6]	A	T	4.714e^-4	0.95	INTRON CG16798
2L	10667716	2L_10667716_SNP [dm3] 2L_10667716_SNP [dm6]	G	T	4.745e^-4	0.95	INTRON CG31871
3L	6909749	3L_6909749_SNP [dm3] 3L_6916649_SNP [dm6]	A	T	4.760e^-4	0.95	INTERGENIC
2R	6914008	2R_6914008_SNP [dm3] 2R_11026503_SNP [dm6]	A	G	4.779e^-4	0.95	INTRON luna
2R	9155943	2R_9155943_SNP [dm3] 2R_13268438_SNP [dm6]	G	A	4.788e^-4	0.95	UTR_3_PRIME Dh31-R	TF binding site mE1_TFBS_cad
2L	3006727	2L_3006727_SNP [dm3] 2L_3006727_SNP [dm6]	T	C	4.797e^-4	0.95	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15308969	2R_15308969_SNP [dm3] 2R_19421464_SNP [dm6]	A	C	4.806e^-4	0.95	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3570791	3L_3570791_INS [dm3] 3L_3570791_INS [dm6]	A	AGATGCAATG	4.825e^-4	0.95	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	2579891	X_2579891_SNP [dm3] X_2685858_SNP [dm6]	T	C	4.837e^-4	0.95	UTR_5_PRIME per
X	2579892	X_2579892_SNP [dm3] X_2685859_SNP [dm6]	A	G	4.837e^-4	0.95	START_GAINED per UTR_5_PRIME per
X	2579901	X_2579901_SNP [dm3] X_2685868_SNP [dm6]	A	C	4.837e^-4	0.95	UTR_5_PRIME per
3R	26631979	3R_26631979_SNP [dm3] 3R_30806257_SNP [dm6]	T	A	4.839e^-4	0.95	UPSTREAM dj-1beta INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12890177	3L_12890177_SNP [dm3] 3L_12897077_SNP [dm6]	C	T	4.855e^-4	0.95	INTERGENIC
3L	10020914	3L_10020914_SNP [dm3] 3L_10027814_SNP [dm6]	T	G	4.858e^-4	0.95	INTRON dpr6
3L	9082921	3L_9082921_SNP [dm3] 3L_9089821_SNP [dm6]	G	A	4.872e^-4	0.95	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8453089	2R_8453089_SNP [dm3] 2R_12565584_SNP [dm6]	A	G	4.904e^-4	0.95	UPSTREAM CG33775 & 1 other INTERGENIC
3L	7163679	3L_7163679_SNP [dm3] 3L_7170579_SNP [dm6]	G	C	4.917e^-4	0.95	DOWNSTREAM Dscam2 INTRON Dscam2
X	20793353	X_20793353_SNP [dm3] X_20922326_SNP [dm6]	C	A	4.924e^-4	0.95	INTRON shakB
2L	6277057	2L_6277057_SNP [dm3] 2L_6277057_SNP [dm6]	A	T	4.928e^-4	0.95	INTRON Ddr
2R	12813688	2R_12813688_SNP [dm3] 2R_16926183_SNP [dm6]	C	T	4.930e^-4	0.95	INTRON Pkc53E
2R	15123723	2R_15123723_SNP [dm3] 2R_19236218_SNP [dm6]	G	A	4.932e^-4	0.95	INTRON cora
2L	7447948	2L_7447948_DEL [dm3] 2L_7447948_DEL [dm6]	AA	A	4.947e^-4	0.95	UTR_5_PRIME santa-maria INTRON santa-maria
X	2492875	X_2492875_SNP [dm3] X_2598842_SNP [dm6]	G	A	4.963e^-4	0.95	UTR_3_PRIME egh DOWNSTREAM Klp3A & 1 other
3L	1745753	3L_1745753_DEL [dm3] 3L_1745753_DEL [dm6]	TGACTAAGG	A	4.997e^-4	0.95	DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12107089	2R_12107089_SNP [dm3] 2R_16219584_SNP [dm6]	A	T	5.032e^-4	0.95	UPSTREAM tRNA:CR30239 & 2 others INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14919565	X_14919565_DEL [dm3] X_15025532_DEL [dm6]	TTT	T	5.035e^-4	0.95	INTRON hiw & 1 other
3L	9203871	3L_9203871_DEL [dm3] 3L_9210771_DEL [dm6]	GTCT	G	5.040e^-4	0.95	INTERGENIC
X	19158207	X_19158207_SNP [dm3] X_19264174_SNP [dm6]	C	A	5.045e^-4	0.95	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3695399	2L_3695399_SNP [dm3] 2L_3695399_SNP [dm6]	C	T	5.045e^-4	0.95	UTR_5_PRIME CG16713 UPSTREAM CR43364 & 1 other DOWNSTREAM CG16712
3R	21855370	3R_21855370_SNP [dm3] 3R_26029648_SNP [dm6]	G	A	5.048e^-4	0.95	NON_SYNONYMOUS_CODING E_spl_m5-HLH	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21874197	3R_21874197_SNP [dm3] 3R_26048475_SNP [dm6]	T	A	5.048e^-4	0.95	INTRON gro
2L	14796411	2L_14796411_SNP [dm3] 2L_14796411_SNP [dm6]	T	C	5.053e^-4	0.95	NON_SYNONYMOUS_CODING CG18420
2L	7213850	2L_7213850_SNP [dm3] 2L_7213850_SNP [dm6]	A	T	5.061e^-4	0.95	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7964026	3L_7964026_SNP [dm3] 3L_7970926_SNP [dm6]	A	G	5.067e^-4	0.95	INTRON RNaseX25	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1131603	3L_1131603_SNP [dm3] 3L_1131603_SNP [dm6]	A	G	5.070e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2R	14628468	2R_14628468_SNP [dm3] 2R_18740963_SNP [dm6]	C	T	5.071e^-4	0.95	INTRON Hs3st-A EXON CR30121
2L	4841350	2L_4841350_SNP [dm3] 2L_4841350_SNP [dm6]	G	A	5.072e^-4	0.95	UTR_3_PRIME CG12194 DOWNSTREAM mxt
2L	3713322	2L_3713322_SNP [dm3] 2L_3713322_SNP [dm6]	C	A	5.080e^-4	0.95	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6698278	3R_6698278_SNP [dm3] 3R_10872556_SNP [dm6]	A	T	5.091e^-4	0.95	UPSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6698293	3R_6698293_SNP [dm3] 3R_10872571_SNP [dm6]	C	T	5.091e^-4	0.95	UPSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5683181	3L_5683181_SNP [dm3] 3L_5690081_SNP [dm6]	A	G	5.099e^-4	0.95	INTRON sif
2L	9174796	2L_9174796_SNP [dm3] 2L_9174796_SNP [dm6]	C	T	5.102e^-4	0.95	INTRON tai
2L	9174803	2L_9174803_SNP [dm3] 2L_9174803_SNP [dm6]	A	T	5.102e^-4	0.95	INTRON tai
2L	9174804	2L_9174804_SNP [dm3] 2L_9174804_SNP [dm6]	A	G	5.102e^-4	0.95	INTRON tai
2L	9174832	2L_9174832_SNP [dm3] 2L_9174832_SNP [dm6]	A	G	5.102e^-4	0.95	INTRON tai
3L	14913618	3L_14913618_SNP [dm3] 3L_14920518_SNP [dm6]	C	G	5.108e^-4	0.95	INTRON DCX-EMAP
X	13506991	X_13506991_SNP [dm3] X_13612958_SNP [dm6]	T	G	5.115e^-4	0.95	NON_SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site mE1_TFBS_HSA
3L	12383428	3L_12383428_SNP [dm3] 3L_12390328_SNP [dm6]	G	A	5.120e^-4	0.95	INTRON Ncc69
2R	12107693	2R_12107693_SNP [dm3] 2R_16220188_SNP [dm6]	T	G	5.127e^-4	0.95	UPSTREAM tRNA:CR30238 DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	5901630	3L_5901630_SNP [dm3] 3L_5908530_SNP [dm6]	C	A	5.129e^-4	0.95	INTRON CG13288
X	3947702	X_3947702_SNP [dm3] X_4053669_SNP [dm6]	A	G	5.131e^-4	0.95	INTERGENIC
2L	9516544	2L_9516544_SNP [dm3] 2L_9516544_SNP [dm6]	T	C	5.134e^-4	0.95	SYNONYMOUS_CODING CG33298
X	6396652	X_6396652_SNP [dm3] X_6502619_SNP [dm6]	C	T	5.151e^-4	0.95	INTRON CG42340
3R	10833657	3R_10833657_SNP [dm3] 3R_15007935_SNP [dm6]	T	G	5.156e^-4	0.95	INTERGENIC
X	6079068	X_6079068_SNP [dm3] X_6185035_SNP [dm6]	A	T	5.156e^-4	0.95	INTRON Ca-alpha1T
2L	11136729	2L_11136729_SNP [dm3] 2L_11136729_SNP [dm6]	T	A	5.159e^-4	0.95	DOWNSTREAM CG4751 INTRON hgo
2L	11136895	2L_11136895_SNP [dm3] 2L_11136895_SNP [dm6]	C	T	5.159e^-4	0.95	SYNONYMOUS_CODING hgo DOWNSTREAM CG4751
2R	16138549	2R_16138549_SNP [dm3] 2R_20251044_SNP [dm6]	C	T	5.174e^-4	0.95	INTRON CG9864
2L	19122656	2L_19122656_SNP [dm3] 2L_19122656_SNP [dm6]	A	G	5.183e^-4	0.95	SYNONYMOUS_CODING l_2_37Cc	regulatory region REDfly_CRMs
2L	19122877	2L_19122877_SNP [dm3] 2L_19122877_SNP [dm6]	A	T	5.183e^-4	0.95	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	19122889	2L_19122889_DEL [dm3] 2L_19122889_DEL [dm6]	AT	A	5.183e^-4	0.95	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	19122894	2L_19122894_SNP [dm3] 2L_19122894_SNP [dm6]	A	T	5.183e^-4	0.95	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	19122896	2L_19122896_SNP [dm3] 2L_19122896_SNP [dm6]	T	A	5.183e^-4	0.95	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	17998727	2L_17998727_SNP [dm3] 2L_17998727_SNP [dm6]	C	T	5.192e^-4	0.95	INTERGENIC
3L	10933133	3L_10933133_SNP [dm3] 3L_10940033_SNP [dm6]	A	G	5.192e^-4	0.95	INTERGENIC
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	5.204e^-4	0.95	INTERGENIC
2L	11400601	2L_11400601_SNP [dm3] 2L_11400601_SNP [dm6]	T	G	5.210e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	16947288	2L_16947288_SNP [dm3] 2L_16947288_SNP [dm6]	T	C	5.221e^-4	0.95	DOWNSTREAM CR44393 INTERGENIC
2R	19028228	2R_19028228_SNP [dm3] 2R_23140705_SNP [dm6]	A	C	5.224e^-4	0.95	UPSTREAM CG13544 INTERGENIC
3L	12319612	3L_12319612_SNP [dm3] 3L_12326512_SNP [dm6]	G	T	5.224e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14121748	3L_14121748_SNP [dm3] 3L_14128648_SNP [dm6]	A	G	5.229e^-4	0.95	INTRON Sox21b	TF binding site mE1_TFBS_HSA
2R	12393176	2R_12393176_SNP [dm3] 2R_16505671_SNP [dm6]	C	T	5.233e^-4	0.95	INTRON Sema-2a
2R	10198669	2R_10198669_SNP [dm3] 2R_14311164_SNP [dm6]	T	A	5.238e^-4	0.95	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10043255	3R_10043255_SNP [dm3] 3R_14217533_SNP [dm6]	G	T	5.239e^-4	0.95	SYNONYMOUS_CODING CG9649 DOWNSTREAM CG31326
X	10274168	X_10274168_SNP [dm3] X_10380135_SNP [dm6]	T	G	5.244e^-4	0.95	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site BDTNP1_TFBS_sna
X	10274175	X_10274175_SNP [dm3] X_10380142_SNP [dm6]	G	A	5.244e^-4	0.95	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site BDTNP1_TFBS_sna
2R	4406545	2R_4406545_SNP [dm3] 2R_8519040_SNP [dm6]	C	A	5.246e^-4	0.95	INTRON mtt
3L	533352	3L_533352_SNP [dm3] 3L_533352_SNP [dm6]	T	G	5.248e^-4	0.95	INTRON klar
2L	11400575	2L_11400575_SNP [dm3] 2L_11400575_SNP [dm6]	C	T	5.252e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11400582	2L_11400582_SNP [dm3] 2L_11400582_SNP [dm6]	T	A	5.252e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11400585	2L_11400585_SNP [dm3] 2L_11400585_SNP [dm6]	C	G	5.252e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11614463	3L_11614463_SNP [dm3] 3L_11621363_SNP [dm6]	C	T	5.254e^-4	0.95	SYNONYMOUS_CODING CG6084
2L	13099148	2L_13099148_SNP [dm3] 2L_13099148_SNP [dm6]	T	G	5.260e^-4	0.95	INTERGENIC
X	13506805	X_13506805_SNP [dm3] X_13612772_SNP [dm6]	G	A	5.266e^-4	0.95	UPSTREAM Ndc80 DOWNSTREAM tth INTRON BthD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13506982	X_13506982_SNP [dm3] X_13612949_SNP [dm6]	T	C	5.266e^-4	0.95	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site mE1_TFBS_HSA
3L	4259314	3L_4259314_SNP [dm3] 3L_4259314_SNP [dm6]	T	C	5.273e^-4	0.95	UPSTREAM CG1309 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4259953	3L_4259953_SNP [dm3] 3L_4259953_SNP [dm6]	A	G	5.273e^-4	0.95	SYNONYMOUS_CODING CG1309 UPSTREAM CG15011	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4260324	3L_4260324_SNP [dm3] 3L_4260324_SNP [dm6]	A	G	5.273e^-4	0.95	DOWNSTREAM CG11586 INTRON CG1309	TF binding site mE1_TFBS_sens
3L	4260726	3L_4260726_SNP [dm3] 3L_4260726_SNP [dm6]	C	G	5.273e^-4	0.95	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586
3L	4260753	3L_4260753_SNP [dm3] 3L_4260753_SNP [dm6]	A	G	5.273e^-4	0.95	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586
3L	4261294	3L_4261294_SNP [dm3] 3L_4261294_SNP [dm6]	G	T	5.273e^-4	0.95	NON_SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586
2R	9255529	2R_9255529_SNP [dm3] 2R_13368024_SNP [dm6]	G	A	5.274e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12181449	2L_12181449_SNP [dm3] 2L_12181449_SNP [dm6]	T	C	5.285e^-4	0.95	INTRON aret
3R	17401225	3R_17401225_SNP [dm3] 3R_21575503_SNP [dm6]	G	A	5.285e^-4	0.95	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10498869	3L_10498869_SNP [dm3] 3L_10505769_SNP [dm6]	C	A	5.300e^-4	0.95	INTRON A2bp1
3L	5479083	3L_5479083_SNP [dm3] 3L_5485983_SNP [dm6]	A	G	5.302e^-4	0.95	INTERGENIC
3L	15775061	3L_15775061_SNP [dm3] 3L_15781961_SNP [dm6]	T	C	5.313e^-4	0.95	INTERGENIC
X	15667140	X_15667140_SNP [dm3] X_15773107_SNP [dm6]	C	T	5.322e^-4	0.95	UPSTREAM CG43672 DOWNSTREAM CG33172 INTERGENIC
2L	17876375	2L_17876375_SNP [dm3] 2L_17876375_SNP [dm6]	G	C	5.325e^-4	0.95	INTERGENIC
3L	17696716	3L_17696716_SNP [dm3] 3L_17703616_SNP [dm6]	C	A	5.335e^-4	0.95	INTRON Ccn
2R	10564017	2R_10564017_SNP [dm3] 2R_14676512_SNP [dm6]	A	G	5.343e^-4	0.95	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
3R	24787898	3R_24787898_SNP [dm3] 3R_28962176_SNP [dm6]	T	C	5.359e^-4	0.95	INTRON CG14521
3R	24787928	3R_24787928_SNP [dm3] 3R_28962206_SNP [dm6]	G	A	5.359e^-4	0.95	INTRON CG14521
3L	1591968	3L_1591968_INS [dm3] 3L_1591968_INS [dm6]	A	ACAAAAACAAA...	5.396e^-4	0.95	INTRON CG13917
3R	15444291	3R_15444291_SNP [dm3] 3R_19618569_SNP [dm6]	A	G	5.413e^-4	0.95	SYNONYMOUS_CODING CG6231
3L	19955550	3L_19955550_SNP [dm3] 3L_19962450_SNP [dm6]	G	C	5.418e^-4	0.95	INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10323276	2R_10323276_SNP [dm3] 2R_14435771_SNP [dm6]	T	C	5.418e^-4	0.95	UPSTREAM Oaz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18420610	3R_18420610_SNP [dm3] 3R_22594888_SNP [dm6]	G	A	5.421e^-4	0.95	INTRON Efa6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6277033	2L_6277033_SNP [dm3] 2L_6277033_SNP [dm6]	G	A	5.424e^-4	0.95	INTRON Ddr
X	6969295	X_6969295_SNP [dm3] X_7075262_SNP [dm6]	T	C	5.448e^-4	0.95	UTR_3_PRIME Sxl DOWNSTREAM Sxl
X	4595158	X_4595158_INS [dm3] X_4701125_INS [dm6]	A	ACA	5.449e^-4	0.95	UTR_3_PRIME ctp	TF binding site BDTNP1_TFBS_dl
3R	26448763	3R_26448763_SNP [dm3] 3R_30623041_SNP [dm6]	C	T	5.468e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16292280	X_16292280_SNP [dm3] X_16398247_SNP [dm6]	C	G	5.469e^-4	0.95	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2R	19645179	2R_19645179_SNP [dm3] 2R_23757656_SNP [dm6]	C	G	5.478e^-4	0.95	INTRON CG9850
2R	19645269	2R_19645269_SNP [dm3] 2R_23757746_SNP [dm6]	G	A	5.478e^-4	0.95	SYNONYMOUS_CODING CG9850
2R	15317551	2R_15317551_SNP [dm3] 2R_19430046_SNP [dm6]	A	G	5.481e^-4	0.95	SYNONYMOUS_CODING CalpA DOWNSTREAM CalpA & 1 other
3R	17058508	3R_17058508_SNP [dm3] 3R_21232786_SNP [dm6]	G	T	5.492e^-4	0.95	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9317573	2L_9317573_SNP [dm3] 2L_9317573_SNP [dm6]	A	T	5.493e^-4	0.95	INTERGENIC
3L	5141893	3L_5141893_SNP [dm3] 3L_5148793_SNP [dm6]	G	A	5.498e^-4	0.95	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
2R	16840835	2R_16840835_SNP [dm3] 2R_20953330_SNP [dm6]	G	C	5.504e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1269230	3L_1269230_INS [dm3] 3L_1269230_INS [dm6]	T	TCTTCT	5.508e^-4	0.95	INTRON CG9134	TF binding site mE1_TFBS_HSA
2L	10082516	2L_10082516_SNP [dm3] 2L_10082516_SNP [dm6]	T	G	5.520e^-4	0.95	INTRON CG44153
3L	12854601	3L_12854601_SNP [dm3] 3L_12861501_SNP [dm6]	T	A	5.522e^-4	0.95	UPSTREAM CG32107 DOWNSTREAM CG10943 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	15479762	X_15479762_SNP [dm3] X_15585729_SNP [dm6]	T	A	5.524e^-4	0.95	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2R	7970197	2R_7970197_MNP [dm3] 2R_12082692_MNP [dm6]	ACC	GGG	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970202	2R_7970202_SNP [dm3] 2R_12082697_SNP [dm6]	G	T	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970204	2R_7970204_DEL [dm3] 2R_12082699_DEL [dm6]	GCAACAGAAAATT...	G	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970219	2R_7970219_SNP [dm3] 2R_12082714_SNP [dm6]	C	G	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970221	2R_7970221_DEL [dm3] 2R_12082716_DEL [dm6]	AC	A	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2R	7970232	2R_7970232_DEL [dm3] 2R_12082727_DEL [dm6]	GC	G	5.538e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
3R	5032109	3R_5032109_SNP [dm3] 3R_9206387_SNP [dm6]	G	A	5.543e^-4	0.95	INTRON pum
2L	11230031	2L_11230031_SNP [dm3] 2L_11230031_SNP [dm6]	G	T	5.562e^-4	0.95	INTRON ab
X	12665875	X_12665875_DEL [dm3] X_12771842_DEL [dm6]	TT	T	5.564e^-4	0.95	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3R	20423630	3R_20423630_SNP [dm3] 3R_24597908_SNP [dm6]	C	T	5.567e^-4	0.95	INTRON mld
3R	13984611	3R_13984611_SNP [dm3] 3R_18158889_SNP [dm6]	A	C	5.580e^-4	0.95	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
X	13795414	X_13795414_SNP [dm3] X_13901381_SNP [dm6]	T	C	5.596e^-4	0.95	INTRON mamo
2R	9176229	2R_9176229_INS [dm3] 2R_13288724_INS [dm6]	A	ATT	5.599e^-4	0.95	INTRON Dh31-R
2L	5240015	2L_5240015_SNP [dm3] 2L_5240015_SNP [dm6]	G	C	5.602e^-4	0.95	UPSTREAM tRNA:CR31971 INTRON tkv	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5240071	2L_5240071_SNP [dm3] 2L_5240071_SNP [dm6]	C	T	5.602e^-4	0.95	UPSTREAM tRNA:CR31971 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18604856	2R_18604856_SNP [dm3] 2R_22717351_SNP [dm6]	T	G	5.606e^-4	0.95	UTR_3_PRIME jbug DOWNSTREAM CG30268
3R	4558164	3R_4558164_SNP [dm3] 3R_8732442_SNP [dm6]	G	T	5.642e^-4	0.95	NON_SYNONYMOUS_CODING CG8202 UPSTREAM M1BP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1074070	3L_1074070_SNP [dm3] 3L_1074070_SNP [dm6]	T	C	5.652e^-4	0.95	INTRON bab1
2R	14749737	2R_14749737_SNP [dm3] 2R_18862232_SNP [dm6]	T	C	5.656e^-4	0.95	UPSTREAM CG43069 & 1 other INTERGENIC
3L	10594254	3L_10594254_SNP [dm3] 3L_10601154_SNP [dm6]	G	A	5.656e^-4	0.95	INTERGENIC
3L	10594578	3L_10594578_SNP [dm3] 3L_10601478_SNP [dm6]	A	G	5.656e^-4	0.95	INTERGENIC
3L	10594579	3L_10594579_SNP [dm3] 3L_10601479_SNP [dm6]	A	T	5.656e^-4	0.95	INTERGENIC
3L	5226981	3L_5226981_DEL [dm3] 3L_5233881_DEL [dm6]	ATACCTACACTGCTA...	A	5.656e^-4	0.95	UPSTREAM CG4669 INTRON shep
2L	16534748	2L_16534748_SNP [dm3] 2L_16534748_SNP [dm6]	T	A	5.665e^-4	0.95	UPSTREAM CR45354 DOWNSTREAM CR45355 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6276964	2L_6276964_SNP [dm3] 2L_6276964_SNP [dm6]	G	T	5.675e^-4	0.95	INTRON Ddr
2L	10667556	2L_10667556_SNP [dm3] 2L_10667556_SNP [dm6]	T	A	5.678e^-4	0.95	INTRON CG31871
3R	18832113	3R_18832113_SNP [dm3] 3R_23006391_SNP [dm6]	C	T	5.712e^-4	0.95	INTRON CG34375
3R	18832121	3R_18832121_SNP [dm3] 3R_23006399_SNP [dm6]	G	A	5.712e^-4	0.95	INTRON CG34375
3L	15677588	3L_15677588_SNP [dm3] 3L_15684488_SNP [dm6]	T	C	5.713e^-4	0.95	INTRON pgant8
3R	9653234	3R_9653234_SNP [dm3] 3R_13827512_SNP [dm6]	A	G	5.732e^-4	0.95	UPSTREAM CR43300 INTRON Mst87F
X	20383755	X_20383755_SNP [dm3] X_20512728_SNP [dm6]	C	T	5.739e^-4	0.95	INTRON CG1812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2577544	X_2577544_SNP [dm3] X_2683511_SNP [dm6]	C	T	5.742e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	2577617	X_2577617_SNP [dm3] X_2683584_SNP [dm6]	C	T	5.742e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	2577688	X_2577688_SNP [dm3] X_2683655_SNP [dm6]	T	C	5.742e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	2577827	X_2577827_INS [dm3] X_2683794_INS [dm6]	C	ATA	5.742e^-4	0.95	UPSTREAM CG2652 EXON CR44470
X	2577829	X_2577829_SNP [dm3] X_2683796_SNP [dm6]	C	A	5.742e^-4	0.95	UPSTREAM CG2652 EXON CR44470
2R	9797124	2R_9797124_SNP [dm3] 2R_13909619_SNP [dm6]	A	C	5.753e^-4	0.95	INTRON shot
3R	16409627	3R_16409627_SNP [dm3] 3R_20583905_SNP [dm6]	C	A	5.755e^-4	0.95	NON_SYNONYMOUS_CODING CG16953	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12704949	2R_12704949_SNP [dm3] 2R_16817444_SNP [dm6]	T	A	5.765e^-4	0.95	UTR_3_PRIME CG5550 DOWNSTREAM CR43417
2L	4006613	2L_4006613_SNP [dm3] 2L_4006613_SNP [dm6]	G	A	5.768e^-4	0.95	DOWNSTREAM CG15422 & 1 other INTERGENIC
2L	8001367	2L_8001367_SNP [dm3] 2L_8001367_SNP [dm6]	A	G	5.773e^-4	0.95	INTRON Wwox
3L	3138515	3L_3138515_SNP [dm3] 3L_3138515_SNP [dm6]	G	T	5.775e^-4	0.95	INTRON CG11537
3R	20600103	3R_20600103_SNP [dm3] 3R_24774381_SNP [dm6]	A	C	5.781e^-4	0.95	INTRON CG42331
2R	7653738	2R_7653738_SNP [dm3] 2R_11766233_SNP [dm6]	C	G	5.786e^-4	0.95	INTRON ths
2R	18101800	2R_18101800_SNP [dm3] 2R_22214295_SNP [dm6]	T	C	5.790e^-4	0.95	INTRON ari-2	TF binding site BDTNP1_TFBS_dl
3R	25354373	3R_25354373_SNP [dm3] 3R_29528651_SNP [dm6]	T	A	5.794e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17419216	3R_17419216_SNP [dm3] 3R_21593494_SNP [dm6]	A	T	5.809e^-4	0.95	INTRON InR & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17424401	2R_17424401_SNP [dm3] 2R_21536896_SNP [dm6]	G	A	5.827e^-4	0.95	UTR_3_PRIME CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17295462	2L_17295462_INS [dm3] 2L_17295462_INS [dm6]	T	TATGTGT	5.832e^-4	0.95	INTERGENIC
2L	3960821	2L_3960821_SNP [dm3] 2L_3960821_SNP [dm6]	G	A	5.832e^-4	0.95	INTRON fred
2R	9606068	2R_9606068_SNP [dm3] 2R_13718563_SNP [dm6]	G	C	5.834e^-4	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1190264	3L_1190264_SNP [dm3] 3L_1190264_SNP [dm6]	C	T	5.843e^-4	0.95	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
3L	9578721	3L_9578721_SNP [dm3] 3L_9585621_SNP [dm6]	T	A	5.847e^-4	0.95	INTRON CG42673
3R	16051923	3R_16051923_SNP [dm3] 3R_20226201_SNP [dm6]	T	C	5.866e^-4	0.95	INTRON Nlg4	TF binding site mE1_TFBS_cad
3L	3501920	3L_3501920_SNP [dm3] 3L_3501920_SNP [dm6]	G	A	5.870e^-4	0.95	INTRON CG42324
3L	14921186	3L_14921186_SNP [dm3] 3L_14928086_SNP [dm6]	T	A	5.898e^-4	0.95	INTRON DCX-EMAP
3R	8191882	3R_8191882_SNP [dm3] 3R_12366160_SNP [dm6]	A	G	5.918e^-4	0.95	UPSTREAM GstD10 DOWNSTREAM GstD9 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15009202	2L_15009202_SNP [dm3] 2L_15009202_SNP [dm6]	T	G	5.934e^-4	0.95	NON_SYNONYMOUS_CODING l_2_35Bc UPSTREAM l_2_35Bd DOWNSTREAM NC2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7661277	2R_7661277_SNP [dm3] 2R_11773772_SNP [dm6]	C	T	5.937e^-4	0.95	INTRON ths	TF binding site mE1_TFBS_sens
3L	10614594	3L_10614594_SNP [dm3] 3L_10621494_SNP [dm6]	C	T	5.938e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	20868800	X_20868800_SNP [dm3] X_20997773_SNP [dm6]	C	A	5.938e^-4	0.95	INTERGENIC
2L	20106572	2L_20106572_SNP [dm3] 2L_20106572_SNP [dm6]	T	G	5.938e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2678465	2R_2678465_SNP [dm3] 2R_6790960_SNP [dm6]	A	G	5.956e^-4	0.95	INTRON Epac
2R	19968065	2R_19968065_DEL [dm3] 2R_24080542_DEL [dm6]	GC	G	5.978e^-4	0.95	UPSTREAM CG13564 & 1 other INTERGENIC
3L	3571775	3L_3571775_SNP [dm3] 3L_3571775_SNP [dm6]	A	G	5.978e^-4	0.95	INTRON Eip63E
3L	3571823	3L_3571823_SNP [dm3] 3L_3571823_SNP [dm6]	C	A	5.978e^-4	0.95	INTRON Eip63E
3L	5984663	3L_5984663_SNP [dm3] 3L_5991563_SNP [dm6]	C	G	5.978e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	698680	3L_698680_SNP [dm3] 3L_698680_SNP [dm6]	A	G	5.978e^-4	0.95	INTRON CG13894	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_inv mE1_TFBS_sens
3L	8424109	3L_8424109_SNP [dm3] 3L_8431009_SNP [dm6]	A	G	5.978e^-4	0.95	UTR_3_PRIME Cbl
2R	7970220	2R_7970220_SNP [dm3] 2R_12082715_SNP [dm6]	C	G	5.986e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
2L	1483574	2L_1483574_SNP [dm3] 2L_1483574_SNP [dm6]	G	T	6.028e^-4	0.95	INTERGENIC
3L	4259375	3L_4259375_SNP [dm3] 3L_4259375_SNP [dm6]	G	A	6.029e^-4	0.95	UPSTREAM CG1309 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4260819	3L_4260819_SNP [dm3] 3L_4260819_SNP [dm6]	C	T	6.029e^-4	0.95	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586
3L	4260903	3L_4260903_SNP [dm3] 3L_4260903_SNP [dm6]	C	G	6.029e^-4	0.95	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586	TF binding site mE1_TFBS_HSA
2L	9169127	2L_9169127_DEL [dm3] 2L_9169127_DEL [dm6]	AA	A	6.035e^-4	0.95	INTRON tai
3L	13172987	3L_13172987_INS [dm3] 3L_13179887_INS [dm6]	G	GA	6.035e^-4	0.95	INTERGENIC
X	8936648	X_8936648_SNP [dm3] X_9042615_SNP [dm6]	G	A	6.048e^-4	0.95	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8365712	X_8365712_SNP [dm3] X_8471679_SNP [dm6]	A	G	6.060e^-4	0.95	INTRON CG33223 & 1 other
X	19622016	X_19622016_DEL [dm3] X_19727983_DEL [dm6]	AA	A	6.067e^-4	0.95	UTR_3_PRIME CG12531
3L	1188608	3L_1188608_SNP [dm3] 3L_1188608_SNP [dm6]	A	G	6.071e^-4	0.95	UPSTREAM CG13912 INTERGENIC
2R	17734068	2R_17734068_SNP [dm3] 2R_21846563_SNP [dm6]	A	G	6.081e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7969666	2R_7969666_SNP [dm3] 2R_12082161_SNP [dm6]	G	T	6.092e^-4	0.95	DOWNSTREAM CG13186 INTERGENIC
X	8789086	X_8789086_SNP [dm3] X_8895053_SNP [dm6]	A	G	6.092e^-4	0.95	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1172479	3L_1172479_SNP [dm3] 3L_1172479_SNP [dm6]	G	A	6.097e^-4	0.95	INTRON bab2	regulatory region REDfly_CRMs
3L	1172537	3L_1172537_SNP [dm3] 3L_1172537_SNP [dm6]	A	C	6.097e^-4	0.95	INTRON bab2	regulatory region REDfly_CRMs
3R	27019163	3R_27019163_SNP [dm3] 3R_31193441_SNP [dm6]	A	G	6.106e^-4	0.95	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8098167	3L_8098167_SNP [dm3] 3L_8105067_SNP [dm6]	C	T	6.109e^-4	0.95	SPLICE_SITE_REGION Ect4 INTRON Ect4	TF binding site mE1_TFBS_cad
2L	20500523	2L_20500523_SNP [dm3] 2L_20500523_SNP [dm6]	T	A	6.115e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19275972	2L_19275972_SNP [dm3] 2L_19275972_SNP [dm6]	T	C	6.124e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15406950	3R_15406950_INS [dm3] 3R_19581228_INS [dm6]	A	AAG	6.125e^-4	0.95	INTRON Dys
2L	12835420	2L_12835420_SNP [dm3] 2L_12835420_SNP [dm6]	C	T	6.126e^-4	0.95	INTERGENIC
X	17252360	X_17252360_DEL [dm3] X_17358327_DEL [dm6]	GCTGCGATGG	G	6.156e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12545606	2R_12545606_SNP [dm3] 2R_16658101_SNP [dm6]	C	T	6.157e^-4	0.95	INTRON Picot
3L	10019453	3L_10019453_DEL [dm3] 3L_10026353_DEL [dm6]	GGGAATAGGGAA...	G	6.157e^-4	0.95	INTRON dpr6
3L	13921878	3L_13921878_SNP [dm3] 3L_13928778_SNP [dm6]	A	T	6.157e^-4	0.95	SYNONYMOUS_CODING CG8833 UPSTREAM Gl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	7064853	3L_7064853_SNP [dm3] 3L_7071753_SNP [dm6]	G	A	6.157e^-4	0.95	INTRON CG8641
X	9884635	X_9884635_SNP [dm3] X_9990602_SNP [dm6]	A	C	6.157e^-4	0.95	INTRON CG32694
X	8045802	X_8045802_SNP [dm3] X_8151769_SNP [dm6]	A	G	6.164e^-4	0.95	SYNONYMOUS_CODING Gbeta5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7676449	3R_7676449_DEL [dm3] 3R_11850727_DEL [dm6]	CAAGTGGGA	C	6.168e^-4	0.95	INTRON CG6959	TF binding site mE1_TFBS_Trl
3L	4276352	3L_4276352_SNP [dm3] 3L_4276352_SNP [dm6]	G	C	6.169e^-4	0.95	NON_SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
2L	15966970	2L_15966970_SNP [dm3] 2L_15966970_SNP [dm6]	G	T	6.170e^-4	0.95	INTERGENIC
X	9762451	X_9762451_SNP [dm3] X_9868418_SNP [dm6]	T	G	6.187e^-4	0.95	UTR_5_PRIME CG45060
2R	19563974	2R_19563974_SNP [dm3] 2R_23676451_SNP [dm6]	C	A	6.212e^-4	0.95	UPSTREAM Pde8 INTRON Pde8
2L	19287277	2L_19287277_SNP [dm3] 2L_19287277_SNP [dm6]	C	T	6.220e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6695325	X_6695325_INS [dm3] X_6801292_INS [dm6]	A	AA	6.231e^-4	0.95	UPSTREAM C3G INTRON C3G	TF binding site BDTNP1_TFBS_dl
3R	19111813	3R_19111813_SNP [dm3] 3R_23286091_SNP [dm6]	G	C	6.236e^-4	0.95	DOWNSTREAM CG17083 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18246103	2R_18246103_SNP [dm3] 2R_22358598_SNP [dm6]	G	C	6.246e^-4	0.95	INTRON Liprin-gamma
2R	18246156	2R_18246156_SNP [dm3] 2R_22358651_SNP [dm6]	G	A	6.246e^-4	0.95	INTRON Liprin-gamma
X	15482871	X_15482871_SNP [dm3] X_15588838_SNP [dm6]	A	G	6.247e^-4	0.95	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13506470	X_13506470_SNP [dm3] X_13612437_SNP [dm6]	A	G	6.252e^-4	0.95	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22697965	3R_22697965_SNP [dm3] 3R_26872243_SNP [dm6]	T	C	6.255e^-4	0.95	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D	TF binding site mE1_TFBS_HSA
3L	17620388	3L_17620388_SNP [dm3] 3L_17627288_SNP [dm6]	C	A	6.258e^-4	0.95	UPSTREAM scaRNA:MeU4-A65 INTRON CG7510
X	17250044	X_17250044_SNP [dm3] X_17356011_SNP [dm6]	C	T	6.259e^-4	0.95	INTERGENIC
2L	9723563	2L_9723563_SNP [dm3] 2L_9723563_SNP [dm6]	G	T	6.273e^-4	0.95	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10020903	3L_10020903_SNP [dm3] 3L_10027803_SNP [dm6]	A	T	6.290e^-4	0.95	INTRON dpr6
3L	7053112	3L_7053112_SNP [dm3] 3L_7060012_SNP [dm6]	A	G	6.295e^-4	0.95	UTR_3_PRIME CG8641
2L	19122867	2L_19122867_SNP [dm3] 2L_19122867_SNP [dm6]	C	T	6.299e^-4	0.95	INTRON l_2_37Cc	regulatory region REDfly_CRMs
X	6376699	X_6376699_SNP [dm3] X_6482666_SNP [dm6]	C	G	6.316e^-4	0.95	INTRON CG42340
3R	26531358	3R_26531358_SNP [dm3] 3R_30705636_SNP [dm6]	G	T	6.330e^-4	0.95	NON_SYNONYMOUS_CODING CG31010	TF binding site mE1_TFBS_HSA
2L	5149724	2L_5149724_SNP [dm3] 2L_5149724_SNP [dm6]	C	T	6.332e^-4	0.95	INTRON Msp300
3L	18307342	3L_18307342_SNP [dm3] 3L_18314242_SNP [dm6]	C	A	6.341e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12374488	2L_12374488_SNP [dm3] 2L_12374488_SNP [dm6]	G	A	6.346e^-4	0.95	INTRON bru-2
2L	17283090	2L_17283090_SNP [dm3] 2L_17283090_SNP [dm6]	T	C	6.347e^-4	0.95	INTERGENIC
2R	19564010	2R_19564010_SNP [dm3] 2R_23676487_SNP [dm6]	A	T	6.354e^-4	0.95	UPSTREAM Pde8 INTRON Pde8
3L	4558991	3L_4558991_SNP [dm3] 3L_4558991_SNP [dm6]	C	T	6.359e^-4	0.95	INTRON CG42540
2L	10672446	2L_10672446_SNP [dm3] 2L_10672446_SNP [dm6]	A	G	6.359e^-4	0.95	DOWNSTREAM CG31871 INTERGENIC
3R	25105615	3R_25105615_SNP [dm3] 3R_29279893_SNP [dm6]	T	C	6.367e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2R	10033124	2R_10033124_SNP [dm3] 2R_14145619_SNP [dm6]	T	C	6.376e^-4	0.95	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	17265226	X_17265226_INS [dm3] X_17371193_INS [dm6]	A	AA	6.377e^-4	0.95	INTERGENIC
3L	4880510	3L_4880510_INS [dm3] 3L_4880510_INS [dm6]	T	TT	6.402e^-4	0.95	INTRON CG17150
2L	20327227	2L_20327227_INS [dm3] 2L_20327227_INS [dm6]	T	TTGAAT	6.419e^-4	0.95	INTRON spir
2L	13918966	2L_13918966_SNP [dm3] 2L_13918966_SNP [dm6]	C	T	6.426e^-4	0.95	INTRON Ance-3
3R	6379073	3R_6379073_SNP [dm3] 3R_10553351_SNP [dm6]	G	C	6.430e^-4	0.95	INTRON hth	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8331078	2L_8331078_DEL [dm3] 2L_8331078_DEL [dm6]	CCTACCA	G	6.433e^-4	0.95	INTRON CG14275
2L	18204381	2L_18204381_SNP [dm3] 2L_18204381_SNP [dm6]	C	T	6.433e^-4	0.95	SYNONYMOUS_CODING CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19100684	2L_19100684_SNP [dm3] 2L_19100684_SNP [dm6]	T	C	6.455e^-4	0.95	INTRON Lim3
2L	12950174	2L_12950174_SNP [dm3] 2L_12950174_SNP [dm6]	T	G	6.462e^-4	0.95	INTERGENIC
3R	6374651	3R_6374651_SNP [dm3] 3R_10548929_SNP [dm6]	A	C	6.464e^-4	0.95	INTRON hth
X	9756176	X_9756176_SNP [dm3] X_9862143_SNP [dm6]	G	A	6.549e^-4	0.95	INTERGENIC
2L	11556504	2L_11556504_SNP [dm3] 2L_11556504_SNP [dm6]	T	C	6.552e^-4	0.95	INTERGENIC
3L	18069060	3L_18069060_DEL [dm3] 3L_18075960_DEL [dm6]	ACAAAAGGCG	A	6.556e^-4	0.95	UPSTREAM CR45391 INTERGENIC
3R	5153337	3R_5153337_SNP [dm3] 3R_9327615_SNP [dm6]	G	T	6.564e^-4	0.95	INTRON CG8861	TF binding site mE1_TFBS_bab1
2L	20334441	2L_20334441_SNP [dm3] 2L_20334441_SNP [dm6]	G	A	6.571e^-4	0.95	INTRON spir
X	2577687	X_2577687_SNP [dm3] X_2683654_SNP [dm6]	T	A	6.573e^-4	0.95	UPSTREAM CG2652 EXON CR44470
2R	17098451	2R_17098451_SNP [dm3] 2R_21210946_SNP [dm6]	T	A	6.575e^-4	0.95	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	17098465	2R_17098465_SNP [dm3] 2R_21210960_SNP [dm6]	C	T	6.575e^-4	0.95	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	5358876	2R_5358876_SNP [dm3] 2R_9471371_SNP [dm6]	G	C	6.575e^-4	0.95	INTRON Camta
3L	15774690	3L_15774690_SNP [dm3] 3L_15781590_SNP [dm6]	A	C	6.575e^-4	0.95	INTERGENIC
3R	22473743	3R_22473743_SNP [dm3] 3R_26648021_SNP [dm6]	C	A	6.579e^-4	0.95	UTR_3_PRIME beat-VII
X	17018920	X_17018920_SNP [dm3] X_17124887_SNP [dm6]	A	C	6.580e^-4	0.95	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	7726767	3L_7726767_SNP [dm3] 3L_7733667_SNP [dm6]	A	C	6.588e^-4	0.95	INTRON CG32373 & 1 other
3L	13913579	3L_13913579_SNP [dm3] 3L_13920479_SNP [dm6]	T	C	6.592e^-4	0.95	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	563231	3L_563231_SNP [dm3] 3L_563231_SNP [dm6]	T	A	6.593e^-4	0.95	INTRON hipk
3L	3567176	3L_3567176_SNP [dm3] 3L_3567176_SNP [dm6]	T	C	6.601e^-4	0.95	INTRON Eip63E
2L	19675824	2L_19675824_SNP [dm3] 2L_19675824_SNP [dm6]	C	T	6.617e^-4	0.95	INTRON Lar
2L	3713231	2L_3713231_SNP [dm3] 2L_3713231_SNP [dm6]	A	T	6.626e^-4	0.95	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11519304	2L_11519304_SNP [dm3] 2L_11519304_SNP [dm6]	T	C	6.631e^-4	0.95	UPSTREAM CG14929 INTRON CG4970
2R	9888159	2R_9888159_SNP [dm3] 2R_14000654_SNP [dm6]	G	C	6.652e^-4	0.95	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11216827	2R_11216827_SNP [dm3] 2R_15329322_SNP [dm6]	C	T	6.676e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5485274	3L_5485274_SNP [dm3] 3L_5492174_SNP [dm6]	C	A	6.679e^-4	0.95	INTERGENIC
2L	11902126	2L_11902126_SNP [dm3] 2L_11902126_SNP [dm6]	C	A	6.685e^-4	0.95	INTRON Pde1c
3L	18399744	3L_18399744_SNP [dm3] 3L_18406644_SNP [dm6]	A	T	6.686e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
X	7584684	X_7584684_SNP [dm3] X_7690651_SNP [dm6]	C	T	6.688e^-4	0.95	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7584697	X_7584697_SNP [dm3] X_7690664_SNP [dm6]	T	C	6.688e^-4	0.95	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20595882	2L_20595882_INS [dm3] 2L_20595882_INS [dm6]	T	TT	6.699e^-4	0.95	INTRON CR44909
3L	9454997	3L_9454997_SNP [dm3] 3L_9461897_SNP [dm6]	C	G	6.720e^-4	0.95	UTR_5_PRIME CG44838 UPSTREAM CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1173238	3L_1173238_SNP [dm3] 3L_1173238_SNP [dm6]	A	T	6.728e^-4	0.95	SYNONYMOUS_CODING bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4275871	3L_4275871_SNP [dm3] 3L_4275871_SNP [dm6]	C	T	6.734e^-4	0.95	SYNONYMOUS_CODING CG1273
2R	7036648	2R_7036648_SNP [dm3] 2R_11149143_SNP [dm6]	A	G	6.757e^-4	0.95	SYNONYMOUS_CODING CG12391 INTRON CG13229	TF binding site mE1_TFBS_cad
2R	17571487	2R_17571487_SNP [dm3] 2R_21683982_SNP [dm6]	G	A	6.758e^-4	0.95	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_MB_Beta_Normal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results