DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.708e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

18131 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15698796	3R_15698796_SNP [dm3] 3R_19873074_SNP [dm6]	C	A	2.238e^-220	4.065e^-215	INTRON CG4562
3R	15825399	3R_15825399_SNP [dm3] 3R_19999677_SNP [dm6]	C	A	2.238e^-220	4.065e^-215	INTRON Hs6st
3R	16211333	3R_16211333_SNP [dm3] 3R_20385611_SNP [dm6]	C	A	2.238e^-220	4.065e^-215	INTRON Gfrl
3R	16233940	3R_16233940_SNP [dm3] 3R_20408218_SNP [dm6]	T	A	2.238e^-220	4.065e^-215	UPSTREAM CG10881 & 1 other INTRON Gfrl
3R	16294030	3R_16294030_SNP [dm3] 3R_20468308_SNP [dm6]	G	T	2.238e^-220	4.065e^-215	INTRON Gfrl
3R	16433016	3R_16433016_SNP [dm3] 3R_20607294_SNP [dm6]	G	A	2.238e^-220	4.065e^-215	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18545492	3R_18545492_SNP [dm3] 3R_22719770_SNP [dm6]	G	T	2.238e^-220	4.065e^-215	INTRON wge	TF binding site mE1_TFBS_sens
3R	18548485	3R_18548485_SNP [dm3] 3R_22722763_SNP [dm6]	G	T	2.238e^-220	4.065e^-215	SYNONYMOUS_CODING Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18675621	3R_18675621_SNP [dm3] 3R_22849899_SNP [dm6]	A	G	2.238e^-220	4.065e^-215	INTERGENIC
3R	18810854	3R_18810854_SNP [dm3] 3R_22985132_SNP [dm6]	C	A	2.238e^-220	4.065e^-215	INTRON Nha2
3R	15820211	3R_15820211_SNP [dm3] 3R_19994489_SNP [dm6]	G	T	1.820e^-216	2.543e^-211	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	16010376	3R_16010376_SNP [dm3] 3R_20184654_SNP [dm6]	A	G	1.820e^-216	2.543e^-211	INTERGENIC
3R	16010475	3R_16010475_SNP [dm3] 3R_20184753_SNP [dm6]	G	A	1.820e^-216	2.543e^-211	INTERGENIC
3R	24135922	3R_24135922_SNP [dm3] 3R_28310200_SNP [dm6]	T	G	5.303e^-211	6.468e^-206	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	18486674	3R_18486674_SNP [dm3] 3R_22660952_SNP [dm6]	C	A	5.341e^-211	6.468e^-206	INTRON CG45058
3R	18576715	3R_18576715_SNP [dm3] 3R_22750993_SNP [dm6]	G	A	9.325e^-211	1.059e^-205	UTR_5_PRIME Usp12-46 & 1 other UPSTREAM rumi	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15994645	3R_15994645_DEL [dm3] 3R_20168923_DEL [dm6]	AA	A	5.792e^-209	6.189e^-204	UPSTREAM CG5023 INTERGENIC
X	2855966	X_2855966_DEL [dm3] X_2961933_DEL [dm6]	AA	A	2.075e^-197	2.094e^-192	INTRON kirre & 1 other
2R	14770128	2R_14770128_SNP [dm3] 2R_18882623_SNP [dm6]	A	C	2.407e^-189	2.301e^-184	INTRON sano
2R	11296197	2R_11296197_SNP [dm3] 2R_15408692_SNP [dm6]	G	A	7.155e^-22	6.498e^-17	UPSTREAM Mtk INTRON CG43729	regulatory region REDfly_CRMs
X	10784119	X_10784119_INS [dm3] X_10890086_INS [dm6]	A	AA	1.743e^-21	1.508e^-16	INTRON Ork1
3R	16005089	3R_16005089_SNP [dm3] 3R_20179367_SNP [dm6]	C	G	1.183e^-20	9.342e^-16	INTERGENIC
3R	16431313	3R_16431313_SNP [dm3] 3R_20605591_SNP [dm6]	G	T	1.183e^-20	9.342e^-16	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
X	16987709	X_16987709_SNP [dm3] X_17093676_SNP [dm6]	G	A	2.781e^-20	2.104e^-15	INTRON CG16700 & 1 other
3R	13880058	3R_13880058_INS [dm3] 3R_18054336_INS [dm6]	A	ACCTGGCTCCAA...	3.836e^-20	2.787e^-15	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	15768682	3R_15768682_SNP [dm3] 3R_19942960_SNP [dm6]	C	T	4.797e^-20	3.005e^-15	INTRON Hs6st
3R	16010034	3R_16010034_SNP [dm3] 3R_20184312_SNP [dm6]	T	G	4.797e^-20	3.005e^-15	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16387550	3R_16387550_SNP [dm3] 3R_20561828_SNP [dm6]	T	A	4.797e^-20	3.005e^-15	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18545173	3R_18545173_SNP [dm3] 3R_22719451_SNP [dm6]	T	C	4.797e^-20	3.005e^-15	INTRON wge
3R	16010497	3R_16010497_SNP [dm3] 3R_20184775_SNP [dm6]	G	A	4.967e^-20	3.007e^-15	INTERGENIC
3R	16989964	3R_16989964_SNP [dm3] 3R_21164242_SNP [dm6]	C	T	1.851e^-19	1.085e^-14	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18721665	3R_18721665_SNP [dm3] 3R_22895943_SNP [dm6]	G	A	6.387e^-19	3.626e^-14	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15759886	3R_15759886_SNP [dm3] 3R_19934164_SNP [dm6]	G	A	7.441e^-19	4.096e^-14	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15768692	3R_15768692_SNP [dm3] 3R_19942970_SNP [dm6]	A	G	8.493e^-19	4.537e^-14	INTRON Hs6st
3R	16387531	3R_16387531_SNP [dm3] 3R_20561809_SNP [dm6]	T	C	3.302e^-18	1.714e^-13	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10654046	2L_10654046_SNP [dm3] 2L_10654046_SNP [dm6]	A	T	9.221e^-11	3.895e^-6	SYNONYMOUS_CODING CG17098	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10694686	2L_10694686_SNP [dm3] 2L_10694686_SNP [dm6]	A	G	9.221e^-11	3.895e^-6	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10700449	2L_10700449_SNP [dm3] 2L_10700449_SNP [dm6]	G	A	9.221e^-11	3.895e^-6	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
2L	11241912	2L_11241912_SNP [dm3] 2L_11241912_SNP [dm6]	T	C	9.221e^-11	3.895e^-6	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11642752	2L_11642752_SNP [dm3] 2L_11642752_SNP [dm6]	A	G	9.221e^-11	3.895e^-6	INTERGENIC
2L	4199102	2L_4199102_SNP [dm3] 2L_4199102_SNP [dm6]	A	G	9.221e^-11	3.895e^-6	UTR_3_PRIME ft	TF binding site mE1_TFBS_cad
2L	4866612	2L_4866612_SNP [dm3] 2L_4866612_SNP [dm6]	G	A	9.221e^-11	3.895e^-6	INTRON pog
2L	7153675	2L_7153675_SNP [dm3] 2L_7153675_SNP [dm6]	G	A	9.221e^-11	3.895e^-6	INTRON Pvf3
2L	1129261	2L_1129261_SNP [dm3] 2L_1129261_SNP [dm6]	G	A	1.382e^-10	4.150e^-6	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	11792160	2L_11792160_SNP [dm3] 2L_11792160_SNP [dm6]	C	G	1.382e^-10	4.150e^-6	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14937	TF binding site mE1_TFBS_cad
2L	13742352	2L_13742352_SNP [dm3] 2L_13742352_SNP [dm6]	A	G	1.382e^-10	4.150e^-6	INTERGENIC
2L	2223837	2L_2223837_SNP [dm3] 2L_2223837_SNP [dm6]	G	A	1.382e^-10	4.150e^-6	SYNONYMOUS_CODING papi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4198688	2L_4198688_SNP [dm3] 2L_4198688_SNP [dm6]	A	T	1.382e^-10	4.150e^-6	UTR_3_PRIME ft UPSTREAM CG3714
2L	4253942	2L_4253942_SNP [dm3] 2L_4253942_SNP [dm6]	A	C	1.382e^-10	4.150e^-6	INTERGENIC
2L	4698035	2L_4698035_SNP [dm3] 2L_4698035_SNP [dm6]	C	G	1.382e^-10	4.150e^-6	INTRON CG34351
2R	768725	2R_768725_SNP [dm3] 2R_4881220_SNP [dm6]	T	C	1.685e^-10	4.150e^-6	INTERGENIC
2L	4689867	2L_4689867_SNP [dm3] 2L_4689867_SNP [dm6]	A	G	1.974e^-10	4.150e^-6	SYNONYMOUS_CODING CG3251 DOWNSTREAM Elba3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6894577	2L_6894577_SNP [dm3] 2L_6894577_SNP [dm6]	A	G	1.974e^-10	4.150e^-6	INTRON Nlg2
2L	9131097	2L_9131097_DEL [dm3] 2L_9131097_DEL [dm6]	AA	A	1.974e^-10	4.150e^-6	INTRON CG32982
2L	10654044	2L_10654044_SNP [dm3] 2L_10654044_SNP [dm6]	T	A	2.152e^-10	4.150e^-6	NON_SYNONYMOUS_CODING CG17098	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10132860	2L_10132860_SNP [dm3] 2L_10132860_SNP [dm6]	G	T	2.787e^-10	4.150e^-6	INTRON CG44153
2L	10132900	2L_10132900_SNP [dm3] 2L_10132900_SNP [dm6]	A	T	2.787e^-10	4.150e^-6	INTRON CG44153
2L	10362930	2L_10362930_SNP [dm3] 2L_10362930_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	UPSTREAM pim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10632917	2L_10632917_SNP [dm3] 2L_10632917_SNP [dm6]	G	T	2.787e^-10	4.150e^-6	INTRON CG7329	TF binding site mE1_TFBS_inv
2L	10694685	2L_10694685_SNP [dm3] 2L_10694685_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	1102849	2L_1102849_SNP [dm3] 2L_1102849_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
2L	1103586	2L_1103586_SNP [dm3] 2L_1103586_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	UTR_3_PRIME mtRNApol	TF binding site mE1_TFBS_cad
2L	1115092	2L_1115092_SNP [dm3] 2L_1115092_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	UTR_3_PRIME Pino DOWNSTREAM CG14340
2L	11240934	2L_11240934_SNP [dm3] 2L_11240934_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	INTRON ab
2L	11442714	2L_11442714_SNP [dm3] 2L_11442714_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	INTRON salm
2L	11492299	2L_11492299_SNP [dm3] 2L_11492299_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11509846	2L_11509846_SNP [dm3] 2L_11509846_SNP [dm6]	C	G	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
2L	11583300	2L_11583300_SNP [dm3] 2L_11583300_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	INTRON kek2
2L	11583302	2L_11583302_SNP [dm3] 2L_11583302_SNP [dm6]	G	C	2.787e^-10	4.150e^-6	INTRON kek2
2L	11640067	2L_11640067_SNP [dm3] 2L_11640067_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	INTERGENIC
2L	11642408	2L_11642408_SNP [dm3] 2L_11642408_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	INTERGENIC
2L	11642986	2L_11642986_SNP [dm3] 2L_11642986_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	INTERGENIC
2L	11649035	2L_11649035_SNP [dm3] 2L_11649035_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	UPSTREAM CG6614 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11652415	2L_11652415_SNP [dm3] 2L_11652415_SNP [dm6]	A	C	2.787e^-10	4.150e^-6	UPSTREAM CG4983 & 1 other INTERGENIC
2L	11691970	2L_11691970_INS [dm3] 2L_11691970_INS [dm6]	C	CTTT	2.787e^-10	4.150e^-6	INTERGENIC
2L	11798433	2L_11798433_SNP [dm3] 2L_11798433_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	UPSTREAM snoRNA:Me18S-A934 INTRON crol	TF binding site mE1_TFBS_cad
2L	12186215	2L_12186215_SNP [dm3] 2L_12186215_SNP [dm6]	G	C	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186217	2L_12186217_INS [dm3] 2L_12186217_INS [dm6]	G	GCATTTTTAGGCA...	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186220	2L_12186220_INS [dm3] 2L_12186220_INS [dm6]	T	TCAACCT	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186242	2L_12186242_SNP [dm3] 2L_12186242_SNP [dm6]	T	G	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186245	2L_12186245_SNP [dm3] 2L_12186245_SNP [dm6]	C	G	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186247	2L_12186247_SNP [dm3] 2L_12186247_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	13231077	2L_13231077_SNP [dm3] 2L_13231077_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	2222893	2L_2222893_SNP [dm3] 2L_2222893_SNP [dm6]	G	T	2.787e^-10	4.150e^-6	UPSTREAM papi INTRON papi
2L	2223820	2L_2223820_SNP [dm3] 2L_2223820_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING papi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2224293	2L_2224293_SNP [dm3] 2L_2224293_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	NON_SYNONYMOUS_CODING papi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2224550	2L_2224550_SNP [dm3] 2L_2224550_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	DOWNSTREAM CG15387 INTRON papi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2224600	2L_2224600_SNP [dm3] 2L_2224600_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING papi DOWNSTREAM CG15387	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2225903	2L_2225903_SNP [dm3] 2L_2225903_SNP [dm6]	T	C	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING CG15387 UPSTREAM rti DOWNSTREAM papi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2226793	2L_2226793_SNP [dm3] 2L_2226793_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	UTR_5_PRIME rti UPSTREAM CG15387 EXON CR44114	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	2232767	2L_2232767_SNP [dm3] 2L_2232767_SNP [dm6]	T	C	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING Sec24CD
2L	2232812	2L_2232812_SNP [dm3] 2L_2232812_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING Sec24CD
2L	2238790	2L_2238790_SNP [dm3] 2L_2238790_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING Tengl2 UPSTREAM Tengl3 DOWNSTREAM Tengl1
2L	3429092	2L_3429092_SNP [dm3] 2L_3429092_SNP [dm6]	A	C	2.787e^-10	4.150e^-6	INTERGENIC
2L	4199077	2L_4199077_DEL [dm3] 2L_4199077_DEL [dm6]	GGG	G	2.787e^-10	4.150e^-6	UTR_3_PRIME ft	TF binding site mE1_TFBS_cad
2L	4199088	2L_4199088_SNP [dm3] 2L_4199088_SNP [dm6]	T	C	2.787e^-10	4.150e^-6	UTR_3_PRIME ft	TF binding site mE1_TFBS_cad
2L	4199112	2L_4199112_DEL [dm3] 2L_4199112_DEL [dm6]	AAGAGCAT	A	2.787e^-10	4.150e^-6	UTR_3_PRIME ft	TF binding site mE1_TFBS_cad
2L	4204993	2L_4204993_SNP [dm3] 2L_4204993_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4496665	2L_4496665_SNP [dm3] 2L_4496665_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4496666	2L_4496666_SNP [dm3] 2L_4496666_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4498768	2L_4498768_SNP [dm3] 2L_4498768_SNP [dm6]	C	A	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4508684	2L_4508684_SNP [dm3] 2L_4508684_SNP [dm6]	A	T	2.787e^-10	4.150e^-6	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4508691	2L_4508691_SNP [dm3] 2L_4508691_SNP [dm6]	C	G	2.787e^-10	4.150e^-6	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4508700	2L_4508700_SNP [dm3] 2L_4508700_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4514272	2L_4514272_SNP [dm3] 2L_4514272_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	INTRON dp
2L	4697314	2L_4697314_SNP [dm3] 2L_4697314_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	INTRON CG34351
2L	4700177	2L_4700177_SNP [dm3] 2L_4700177_SNP [dm6]	A	T	2.787e^-10	4.150e^-6	DOWNSTREAM Taf12L INTRON CG34351
2L	4700199	2L_4700199_SNP [dm3] 2L_4700199_SNP [dm6]	A	C	2.787e^-10	4.150e^-6	DOWNSTREAM Taf12L INTRON CG34351
2L	4700244	2L_4700244_INS [dm3] 2L_4700244_INS [dm6]	G	CAA	2.787e^-10	4.150e^-6	DOWNSTREAM Taf12L INTRON CG34351
2L	4700248	2L_4700248_SNP [dm3] 2L_4700248_SNP [dm6]	A	C	2.787e^-10	4.150e^-6	DOWNSTREAM Taf12L INTRON CG34351
2L	4701451	2L_4701451_SNP [dm3] 2L_4701451_SNP [dm6]	T	G	2.787e^-10	4.150e^-6	NON_SYNONYMOUS_CODING Taf12L INTRON CG34351
2L	4701459	2L_4701459_INS [dm3] 2L_4701459_INS [dm6]	T	TCTT	2.787e^-10	4.150e^-6	CODON_INSERTION Taf12L INTRON CG34351
2L	4701557	2L_4701557_SNP [dm3] 2L_4701557_SNP [dm6]	A	G	2.787e^-10	4.150e^-6	UPSTREAM Taf12L INTRON CG34351
2L	4702356	2L_4702356_SNP [dm3] 2L_4702356_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	UPSTREAM Taf12L INTRON CG34351
2L	4866216	2L_4866216_SNP [dm3] 2L_4866216_SNP [dm6]	G	A	2.787e^-10	4.150e^-6	INTRON pog
2L	4866565	2L_4866565_SNP [dm3] 2L_4866565_SNP [dm6]	T	A	2.787e^-10	4.150e^-6	INTRON pog
2L	6305119	2L_6305119_SNP [dm3] 2L_6305119_SNP [dm6]	C	G	2.787e^-10	4.150e^-6	INTRON Ddr
2L	6305122	2L_6305122_SNP [dm3] 2L_6305122_SNP [dm6]	C	G	2.787e^-10	4.150e^-6	INTRON Ddr
2L	6305198	2L_6305198_SNP [dm3] 2L_6305198_SNP [dm6]	T	C	2.787e^-10	4.150e^-6	INTRON Ddr	TF binding site mE1_TFBS_chinmo
2L	9201831	2L_9201831_SNP [dm3] 2L_9201831_SNP [dm6]	G	T	2.787e^-10	4.150e^-6	INTRON tai
2L	9390290	2L_9390290_SNP [dm3] 2L_9390290_SNP [dm6]	C	T	2.787e^-10	4.150e^-6	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
2L	9640736	2L_9640736_SNP [dm3] 2L_9640736_SNP [dm6]	A	C	2.787e^-10	4.150e^-6	INTRON Apoltp
2L	11645889	2L_11645889_SNP [dm3] 2L_11645889_SNP [dm6]	A	C	3.684e^-10	5.440e^-6	INTRON CG6614
2L	2327612	2L_2327612_SNP [dm3] 2L_2327612_SNP [dm6]	A	G	4.194e^-10	6.143e^-6	INTRON CG9967 & 1 other
2L	10654306	2L_10654306_SNP [dm3] 2L_10654306_SNP [dm6]	G	T	5.593e^-10	6.589e^-6	UTR_3_PRIME CG17098	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11378556	2L_11378556_SNP [dm3] 2L_11378556_SNP [dm6]	A	G	5.593e^-10	6.589e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11509447	2L_11509447_SNP [dm3] 2L_11509447_SNP [dm6]	T	C	5.593e^-10	6.589e^-6	DOWNSTREAM spz4 INTRON CG6509
2L	11617848	2L_11617848_SNP [dm3] 2L_11617848_SNP [dm6]	C	T	5.593e^-10	6.589e^-6	INTRON kek2
2L	14813212	2L_14813212_SNP [dm3] 2L_14813212_SNP [dm6]	G	T	5.593e^-10	6.589e^-6	DOWNSTREAM CG33309 INTERGENIC
2L	2224539	2L_2224539_SNP [dm3] 2L_2224539_SNP [dm6]	A	G	5.593e^-10	6.589e^-6	INTRON papi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4661346	2L_4661346_SNP [dm3] 2L_4661346_SNP [dm6]	G	T	5.593e^-10	6.589e^-6	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4661376	2L_4661376_SNP [dm3] 2L_4661376_SNP [dm6]	G	A	5.593e^-10	6.589e^-6	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4676475	2L_4676475_SNP [dm3] 2L_4676475_SNP [dm6]	C	T	5.593e^-10	6.589e^-6	INTERGENIC
2L	4687976	2L_4687976_SNP [dm3] 2L_4687976_SNP [dm6]	G	A	5.593e^-10	6.589e^-6	NON_SYNONYMOUS_CODING Elba3 DOWNSTREAM CG11929 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4692611	2L_4692611_SNP [dm3] 2L_4692611_SNP [dm6]	T	G	5.593e^-10	6.589e^-6	INTERGENIC
2L	4692693	2L_4692693_SNP [dm3] 2L_4692693_SNP [dm6]	C	T	5.593e^-10	6.589e^-6	INTERGENIC
2L	4702934	2L_4702934_SNP [dm3] 2L_4702934_SNP [dm6]	G	C	5.593e^-10	6.589e^-6	INTRON CG34351
2L	9926003	2L_9926003_SNP [dm3] 2L_9926003_SNP [dm6]	G	C	5.593e^-10	6.589e^-6	INTRON CG42366
2L	10276256	2L_10276256_DEL [dm3] 2L_10276256_DEL [dm6]	TTTATATATCAATAATAAGA...	C	5.623e^-10	6.589e^-6	INTRON Utx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10638231	2L_10638231_SNP [dm3] 2L_10638231_SNP [dm6]	C	G	5.623e^-10	6.589e^-6	UTR_5_PRIME CG7329 UPSTREAM CR45351
2L	10990439	2L_10990439_SNP [dm3] 2L_10990439_SNP [dm6]	C	A	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING CG16833 INTRON CG16833	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11686573	2L_11686573_SNP [dm3] 2L_11686573_SNP [dm6]	A	G	5.623e^-10	6.589e^-6	INTERGENIC
2L	11704231	2L_11704231_SNP [dm3] 2L_11704231_SNP [dm6]	A	G	5.623e^-10	6.589e^-6	INTERGENIC
2L	2237261	2L_2237261_SNP [dm3] 2L_2237261_SNP [dm6]	G	A	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING Tengl3 UPSTREAM Sec24CD DOWNSTREAM CR44115
2L	3046613	2L_3046613_DEL [dm3] 2L_3046613_DEL [dm6]	CAAGTGGC	C	5.623e^-10	6.589e^-6	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad
2L	3046653	2L_3046653_SNP [dm3] 2L_3046653_SNP [dm6]	C	T	5.623e^-10	6.589e^-6	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad
2L	4098850	2L_4098850_SNP [dm3] 2L_4098850_SNP [dm6]	C	T	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4098853	2L_4098853_SNP [dm3] 2L_4098853_SNP [dm6]	C	T	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4098871	2L_4098871_SNP [dm3] 2L_4098871_SNP [dm6]	T	G	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4509350	2L_4509350_SNP [dm3] 2L_4509350_SNP [dm6]	C	T	5.623e^-10	6.589e^-6	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4702435	2L_4702435_SNP [dm3] 2L_4702435_SNP [dm6]	A	G	5.623e^-10	6.589e^-6	UPSTREAM Taf12L INTRON CG34351
2L	4702978	2L_4702978_INS [dm3] 2L_4702978_INS [dm6]	C	CGGGCACACGAGAATAAAGT...	5.623e^-10	6.589e^-6	INTRON CG34351
2L	4702982	2L_4702982_SNP [dm3] 2L_4702982_SNP [dm6]	G	A	5.623e^-10	6.589e^-6	INTRON CG34351
2L	4703526	2L_4703526_SNP [dm3] 2L_4703526_SNP [dm6]	G	C	5.623e^-10	6.589e^-6	INTRON CG34351
2L	9640840	2L_9640840_SNP [dm3] 2L_9640840_SNP [dm6]	G	T	5.623e^-10	6.589e^-6	INTRON Apoltp
2L	1033971	2L_1033971_SNP [dm3] 2L_1033971_SNP [dm6]	G	A	6.207e^-10	7.227e^-6	NON_SYNONYMOUS_CODING IA-2
2L	10654593	2L_10654593_SNP [dm3] 2L_10654593_SNP [dm6]	T	C	7.065e^-10	8.122e^-6	DOWNSTREAM CG17098 INTERGENIC
2L	4703877	2L_4703877_SNP [dm3] 2L_4703877_SNP [dm6]	C	G	7.065e^-10	8.122e^-6	INTRON CG34351
2L	2224594	2L_2224594_SNP [dm3] 2L_2224594_SNP [dm6]	A	G	8.251e^-10	9.368e^-6	SYNONYMOUS_CODING papi DOWNSTREAM CG15387	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4508694	2L_4508694_SNP [dm3] 2L_4508694_SNP [dm6]	T	G	8.251e^-10	9.368e^-6	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11743342	2R_11743342_SNP [dm3] 2R_15855837_SNP [dm6]	T	A	8.736e^-10	9.617e^-6	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
2R	12251392	2R_12251392_SNP [dm3] 2R_16363887_SNP [dm6]	G	A	8.736e^-10	9.617e^-6	SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
2R	14216585	2R_14216585_SNP [dm3] 2R_18329080_SNP [dm6]	A	T	8.736e^-10	9.617e^-6	INTRON sbb
2R	15357714	2R_15357714_SNP [dm3] 2R_19470209_SNP [dm6]	A	G	8.736e^-10	9.617e^-6	SYNONYMOUS_CODING par-1 INTRON par-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16612838	2R_16612838_SNP [dm3] 2R_20725333_SNP [dm6]	A	G	8.736e^-10	9.617e^-6	INTRON dpr
2L	4704552	2L_4704552_SNP [dm3] 2L_4704552_SNP [dm6]	T	C	9.059e^-10	9.913e^-6	INTRON CG34351
2L	4692765	2L_4692765_SNP [dm3] 2L_4692765_SNP [dm6]	A	G	1.128e^-9	1.180e^-5	INTERGENIC
2L	4692879	2L_4692879_SNP [dm3] 2L_4692879_SNP [dm6]	T	A	1.128e^-9	1.180e^-5	INTERGENIC
2L	9083367	2L_9083367_SNP [dm3] 2L_9083367_SNP [dm6]	A	G	1.128e^-9	1.180e^-5	UPSTREAM Toll-4 INTERGENIC
2L	9083434	2L_9083434_SNP [dm3] 2L_9083434_SNP [dm6]	T	C	1.128e^-9	1.180e^-5	UPSTREAM Toll-4 INTERGENIC
2L	9768006	2L_9768006_SNP [dm3] 2L_9768006_SNP [dm6]	A	G	1.128e^-9	1.180e^-5	NON_SYNONYMOUS_CODING CG4017 INTRON ppk18
2L	13754651	2L_13754651_SNP [dm3] 2L_13754651_SNP [dm6]	T	A	1.137e^-9	1.180e^-5	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2L	14764898	2L_14764898_SNP [dm3] 2L_14764898_SNP [dm6]	A	G	1.137e^-9	1.180e^-5	DOWNSTREAM CSN1a INTERGENIC
2L	14767383	2L_14767383_SNP [dm3] 2L_14767383_SNP [dm6]	T	A	1.137e^-9	1.180e^-5	DOWNSTREAM CG4701 INTERGENIC
2L	4514239	2L_4514239_SNP [dm3] 2L_4514239_SNP [dm6]	T	C	1.137e^-9	1.180e^-5	INTRON dp
2L	4860621	2L_4860621_SNP [dm3] 2L_4860621_SNP [dm6]	A	C	1.274e^-9	1.314e^-5	INTRON pog
2L	14813252	2L_14813252_SNP [dm3] 2L_14813252_SNP [dm6]	A	C	1.639e^-9	1.682e^-5	DOWNSTREAM CG33309 INTERGENIC
2R	11179184	2R_11179184_SNP [dm3] 2R_15291679_SNP [dm6]	C	T	1.689e^-9	1.723e^-5	UPSTREAM Trpm INTRON Trpm
2L	4661366	2L_4661366_SNP [dm3] 2L_4661366_SNP [dm6]	A	C	1.898e^-9	1.927e^-5	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17161123	2R_17161123_SNP [dm3] 2R_21273618_SNP [dm6]	G	A	1.919e^-9	1.937e^-5	INTRON Rgk3
2L	4703002	2L_4703002_INS [dm3] 2L_4703002_INS [dm6]	A	AAGTAT	2.279e^-9	2.287e^-5	INTRON CG34351
2L	14767376	2L_14767376_SNP [dm3] 2L_14767376_SNP [dm6]	C	T	2.303e^-9	2.299e^-5	DOWNSTREAM CG4701 INTERGENIC
3L	4372331	3L_4372331_SNP [dm3] 3L_4372331_SNP [dm6]	A	C	2.447e^-9	2.428e^-5	INTRON DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7331845	2L_7331845_SNP [dm3] 2L_7331845_SNP [dm6]	G	A	2.876e^-9	2.542e^-5	INTERGENIC
2L	5313372	2L_5313372_SNP [dm3] 2L_5313372_SNP [dm6]	G	A	3.260e^-9	2.542e^-5	INTRON CG14024	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16368346	2R_16368346_SNP [dm3] 2R_20480841_SNP [dm6]	C	T	3.285e^-9	2.542e^-5	INTERGENIC
2R	11177112	2R_11177112_SNP [dm3] 2R_15289607_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	INTRON Trpm
2R	11178692	2R_11178692_DEL [dm3] 2R_15291187_DEL [dm6]	TATGT	T	3.387e^-9	2.542e^-5	UTR_5_PRIME Trpm INTRON Trpm
2R	11179110	2R_11179110_DEL [dm3] 2R_15291605_DEL [dm6]	TCATTTAAGTGTT...	T	3.387e^-9	2.542e^-5	UPSTREAM Trpm INTRON Trpm
2R	11181112	2R_11181112_SNP [dm3] 2R_15293607_SNP [dm6]	C	A	3.387e^-9	2.542e^-5	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
2R	11181219	2R_11181219_SNP [dm3] 2R_15293714_SNP [dm6]	A	G	3.387e^-9	2.542e^-5	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
2R	11201934	2R_11201934_SNP [dm3] 2R_15314429_SNP [dm6]	C	G	3.387e^-9	2.542e^-5	INTRON mus210
2R	11202481	2R_11202481_SNP [dm3] 2R_15314976_SNP [dm6]	A	C	3.387e^-9	2.542e^-5	SYNONYMOUS_CODING mus210
2R	11742859	2R_11742859_SNP [dm3] 2R_15855354_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	UTR_3_PRIME tun UPSTREAM CG12970 DOWNSTREAM tun
2R	11743343	2R_11743343_SNP [dm3] 2R_15855838_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
2R	11970512	2R_11970512_SNP [dm3] 2R_16083007_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	UTR_3_PRIME Dg
2R	12119670	2R_12119670_SNP [dm3] 2R_16232165_SNP [dm6]	A	G	3.387e^-9	2.542e^-5	NON_SYNONYMOUS_CODING CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12165666	2R_12165666_SNP [dm3] 2R_16278161_SNP [dm6]	T	C	3.387e^-9	2.542e^-5	SYNONYMOUS_CODING cato DOWNSTREAM CG33017	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12167398	2R_12167398_SNP [dm3] 2R_16279893_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	UPSTREAM CG15704 INTERGENIC
2R	12954856	2R_12954856_SNP [dm3] 2R_17067351_SNP [dm6]	T	G	3.387e^-9	2.542e^-5	NON_SYNONYMOUS_CODING CG30460 DOWNSTREAM CG6967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13914535	2R_13914535_SNP [dm3] 2R_18027030_SNP [dm6]	A	T	3.387e^-9	2.542e^-5	INTERGENIC
2R	14185688	2R_14185688_SNP [dm3] 2R_18298183_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	UTR_5_PRIME CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
2R	14222755	2R_14222755_SNP [dm3] 2R_18335250_SNP [dm6]	A	G	3.387e^-9	2.542e^-5	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14222762	2R_14222762_SNP [dm3] 2R_18335257_SNP [dm6]	G	T	3.387e^-9	2.542e^-5	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14439644	2R_14439644_INS [dm3] 2R_18552139_INS [dm6]	T	TT	3.387e^-9	2.542e^-5	INTERGENIC
2R	14439667	2R_14439667_SNP [dm3] 2R_18552162_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	INTERGENIC
2R	14490732	2R_14490732_SNP [dm3] 2R_18603227_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	14636490	2R_14636490_SNP [dm3] 2R_18748985_SNP [dm6]	T	C	3.387e^-9	2.542e^-5	INTRON Hs3st-A
2R	14769553	2R_14769553_SNP [dm3] 2R_18882048_SNP [dm6]	T	C	3.387e^-9	2.542e^-5	INTRON sano	TF binding site mE1_TFBS_HSA
2R	14782900	2R_14782900_SNP [dm3] 2R_18895395_SNP [dm6]	A	C	3.387e^-9	2.542e^-5	INTRON sano
2R	14904539	2R_14904539_SNP [dm3] 2R_19017034_SNP [dm6]	T	A	3.387e^-9	2.542e^-5	INTERGENIC
2R	14904555	2R_14904555_SNP [dm3] 2R_19017050_SNP [dm6]	G	T	3.387e^-9	2.542e^-5	INTERGENIC
2R	14915729	2R_14915729_SNP [dm3] 2R_19028224_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	INTRON 5-HT1B
2R	14916534	2R_14916534_SNP [dm3] 2R_19029029_SNP [dm6]	A	G	3.387e^-9	2.542e^-5	UTR_5_PRIME 5-HT1B UPSTREAM CG43351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14921353	2R_14921353_SNP [dm3] 2R_19033848_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	INTERGENIC
2R	14921363	2R_14921363_SNP [dm3] 2R_19033858_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	INTERGENIC
2R	14921427	2R_14921427_SNP [dm3] 2R_19033922_SNP [dm6]	C	G	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931230	2R_14931230_SNP [dm3] 2R_19043725_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931352	2R_14931352_SNP [dm3] 2R_19043847_SNP [dm6]	C	G	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931474	2R_14931474_SNP [dm3] 2R_19043969_SNP [dm6]	T	C	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931765	2R_14931765_SNP [dm3] 2R_19044260_SNP [dm6]	T	G	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931771	2R_14931771_SNP [dm3] 2R_19044266_SNP [dm6]	T	A	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931791	2R_14931791_SNP [dm3] 2R_19044286_SNP [dm6]	T	A	3.387e^-9	2.542e^-5	INTERGENIC
2R	14931814	2R_14931814_SNP [dm3] 2R_19044309_SNP [dm6]	C	A	3.387e^-9	2.542e^-5	INTERGENIC
2R	15224751	2R_15224751_SNP [dm3] 2R_19337246_SNP [dm6]	T	G	3.387e^-9	2.542e^-5	INTRON Rgk1
2R	15265716	2R_15265716_SNP [dm3] 2R_19378211_SNP [dm6]	T	C	3.387e^-9	2.542e^-5	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15354043	2R_15354043_SNP [dm3] 2R_19466538_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	UTR_3_PRIME par-1 UPSTREAM par-1 INTRON par-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15354079	2R_15354079_SNP [dm3] 2R_19466574_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	UTR_3_PRIME par-1 UPSTREAM par-1 INTRON par-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15357849	2R_15357849_INS [dm3] 2R_19470344_INS [dm6]	C	CA	3.387e^-9	2.542e^-5	SPLICE_SITE_REGION par-1 INTRON par-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15386791	2R_15386791_DEL [dm3] 2R_19499286_DEL [dm6]	ATAACCCTTTGTTA...	A	3.387e^-9	2.542e^-5	DOWNSTREAM CG16926 INTRON CG15120
2R	16610434	2R_16610434_SNP [dm3] 2R_20722929_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	INTRON dpr EXON CR44660
2R	16610439	2R_16610439_SNP [dm3] 2R_20722934_SNP [dm6]	G	T	3.387e^-9	2.542e^-5	INTRON dpr EXON CR44660
2R	16612806	2R_16612806_SNP [dm3] 2R_20725301_SNP [dm6]	C	G	3.387e^-9	2.542e^-5	INTRON dpr
2R	16614638	2R_16614638_SNP [dm3] 2R_20727133_SNP [dm6]	G	C	3.387e^-9	2.542e^-5	DOWNSTREAM CG13442 INTRON dpr	TF binding site mE1_TFBS_chinmo
2R	17161027	2R_17161027_SNP [dm3] 2R_21273522_SNP [dm6]	C	G	3.387e^-9	2.542e^-5	INTRON Rgk3
2R	17164420	2R_17164420_SNP [dm3] 2R_21276915_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	INTRON Rgk3
2R	17165687	2R_17165687_SNP [dm3] 2R_21278182_SNP [dm6]	G	C	3.387e^-9	2.542e^-5	INTRON Rgk3
2R	17507584	2R_17507584_SNP [dm3] 2R_21620079_SNP [dm6]	G	A	3.387e^-9	2.542e^-5	SYNONYMOUS_CODING PTP-ER UPSTREAM clt	TF binding site mE1_TFBS_cad
2R	18242157	2R_18242157_SNP [dm3] 2R_22354652_SNP [dm6]	A	T	3.387e^-9	2.542e^-5	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2R	19851491	2R_19851491_SNP [dm3] 2R_23963968_SNP [dm6]	G	T	3.387e^-9	2.542e^-5	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3284276	2R_3284276_SNP [dm3] 2R_7396771_SNP [dm6]	C	T	3.387e^-9	2.542e^-5	UPSTREAM CG1707 DOWNSTREAM Eaf & 1 other INTERGENIC
2R	9800079	2R_9800079_INS [dm3] 2R_13912574_INS [dm6]	T	TT	3.387e^-9	2.542e^-5	INTRON shot	TF binding site BDTNP1_TFBS_twi
2R	9146253	2R_9146253_SNP [dm3] 2R_13258748_SNP [dm6]	A	T	4.827e^-9	3.609e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	11197270	2R_11197270_DEL [dm3] 2R_15309765_DEL [dm6]	GTAAG	G	6.139e^-9	4.267e^-5	UPSTREAM Trpm DOWNSTREAM CG8152 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad transposable element FlyBase
2R	11761650	2R_11761650_SNP [dm3] 2R_15874145_SNP [dm6]	T	C	6.139e^-9	4.267e^-5	INTRON sli	TF binding site BDTNP1_TFBS_sna
2R	12165711	2R_12165711_SNP [dm3] 2R_16278206_SNP [dm6]	G	T	6.139e^-9	4.267e^-5	SYNONYMOUS_CODING cato DOWNSTREAM CG33017	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12368897	2R_12368897_SNP [dm3] 2R_16481392_SNP [dm6]	A	T	6.139e^-9	4.267e^-5	INTERGENIC
2R	12370802	2R_12370802_SNP [dm3] 2R_16483297_SNP [dm6]	T	A	6.139e^-9	4.267e^-5	INTERGENIC
2R	12388227	2R_12388227_SNP [dm3] 2R_16500722_SNP [dm6]	G	A	6.139e^-9	4.267e^-5	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12564747	2R_12564747_INS [dm3] 2R_16677242_INS [dm6]	T	TTTTTGT	6.139e^-9	4.267e^-5	INTRON CG30463
2R	12564772	2R_12564772_SNP [dm3] 2R_16677267_SNP [dm6]	C	T	6.139e^-9	4.267e^-5	INTRON CG30463
2R	14324529	2R_14324529_DEL [dm3] 2R_18437024_DEL [dm6]	TCCTCT	T	6.139e^-9	4.267e^-5	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14324542	2R_14324542_SNP [dm3] 2R_18437037_SNP [dm6]	C	A	6.139e^-9	4.267e^-5	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14931969	2R_14931969_SNP [dm3] 2R_19044464_SNP [dm6]	C	T	6.139e^-9	4.267e^-5	INTERGENIC
2R	3279172	2R_3279172_SNP [dm3] 2R_7391667_SNP [dm6]	T	C	6.139e^-9	4.267e^-5	NON_SYNONYMOUS_CODING Gr43a DOWNSTREAM CG11107 INTRON Gr43a
2R	11177165	2R_11177165_SNP [dm3] 2R_15289660_SNP [dm6]	G	A	6.179e^-9	4.267e^-5	INTRON Trpm
2R	12161506	2R_12161506_SNP [dm3] 2R_16274001_SNP [dm6]	T	A	6.179e^-9	4.267e^-5	NON_SYNONYMOUS_CODING CG33017
2R	12231358	2R_12231358_SNP [dm3] 2R_16343853_SNP [dm6]	T	A	6.179e^-9	4.267e^-5	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
2R	12273476	2R_12273476_SNP [dm3] 2R_16385971_SNP [dm6]	C	G	6.179e^-9	4.267e^-5	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12273483	2R_12273483_SNP [dm3] 2R_16385978_SNP [dm6]	C	T	6.179e^-9	4.267e^-5	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12273508	2R_12273508_SNP [dm3] 2R_16386003_SNP [dm6]	T	A	6.179e^-9	4.267e^-5	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12288235	2R_12288235_SNP [dm3] 2R_16400730_SNP [dm6]	T	C	6.179e^-9	4.267e^-5	INTRON Sema-2b
2R	16612841	2R_16612841_SNP [dm3] 2R_20725336_SNP [dm6]	C	T	6.179e^-9	4.267e^-5	INTRON dpr
2R	16593203	2R_16593203_SNP [dm3] 2R_20705698_SNP [dm6]	T	G	7.018e^-9	4.828e^-5	INTRON dpr
2R	14766330	2R_14766330_SNP [dm3] 2R_18878825_SNP [dm6]	G	T	7.738e^-9	5.284e^-5	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17170334	2R_17170334_SNP [dm3] 2R_21282829_SNP [dm6]	A	T	7.738e^-9	5.284e^-5	SPLICE_SITE_REGION MFS16 START_GAINED MFS16 UTR_5_PRIME MFS16 UPSTREAM MFS16 INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	3279569	2R_3279569_SNP [dm3] 2R_7392064_SNP [dm6]	G	A	8.963e^-9	5.903e^-5	INTRON Gr43a
2R	8622453	2R_8622453_SNP [dm3] 2R_12734948_SNP [dm6]	C	T	8.963e^-9	5.903e^-5	SYNONYMOUS_CODING CG42663
2R	9146173	2R_9146173_SNP [dm3] 2R_13258668_SNP [dm6]	C	G	8.963e^-9	5.903e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	9146182	2R_9146182_SNP [dm3] 2R_13258677_SNP [dm6]	G	A	8.963e^-9	5.903e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	9146231	2R_9146231_SNP [dm3] 2R_13258726_SNP [dm6]	G	A	8.963e^-9	5.903e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	9146238	2R_9146238_SNP [dm3] 2R_13258733_SNP [dm6]	A	G	8.963e^-9	5.903e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	9146260	2R_9146260_SNP [dm3] 2R_13258755_SNP [dm6]	T	C	8.963e^-9	5.903e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	14917314	2R_14917314_SNP [dm3] 2R_19029809_SNP [dm6]	C	T	8.964e^-9	5.903e^-5	UPSTREAM CG43351 INTRON 5-HT1B
2R	17160869	2R_17160869_SNP [dm3] 2R_21273364_SNP [dm6]	G	T	8.964e^-9	5.903e^-5	INTRON Rgk3
2L	15431178	2L_15431178_SNP [dm3] 2L_15431178_SNP [dm6]	A	T	8.978e^-9	5.903e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15431209	2L_15431209_SNP [dm3] 2L_15431209_SNP [dm6]	T	G	9.002e^-9	5.903e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11507419	2R_11507419_SNP [dm3] 2R_15619914_SNP [dm6]	A	G	1.055e^-8	6.892e^-5	INTRON CG42524
2R	12349554	2R_12349554_SNP [dm3] 2R_16462049_SNP [dm6]	C	T	1.114e^-8	7.150e^-5	INTERGENIC
2R	13804695	2R_13804695_SNP [dm3] 2R_17917190_SNP [dm6]	T	G	1.114e^-8	7.150e^-5	INTRON Elk
2R	14918288	2R_14918288_DEL [dm3] 2R_19030783_DEL [dm6]	TACAAT	T	1.114e^-8	7.150e^-5	DOWNSTREAM CG43351 INTRON 5-HT1B
2R	14931683	2R_14931683_SNP [dm3] 2R_19044178_SNP [dm6]	C	A	1.114e^-8	7.150e^-5	INTERGENIC
2R	17431875	2R_17431875_SNP [dm3] 2R_21544370_SNP [dm6]	A	G	1.114e^-8	7.150e^-5	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14226419	2R_14226419_DEL [dm3] 2R_18338914_DEL [dm6]	GCGACGGAAAAG...	G	1.119e^-8	7.160e^-5	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13747643	2R_13747643_SNP [dm3] 2R_17860138_SNP [dm6]	C	T	1.129e^-8	7.199e^-5	UTR_3_PRIME olf186-F UPSTREAM CG14490
2R	11968761	2R_11968761_INS [dm3] 2R_16081256_INS [dm6]	C	CATACGTAC	1.212e^-8	7.700e^-5	UTR_3_PRIME Dg DOWNSTREAM Dg
3L	12422196	3L_12422196_SNP [dm3] 3L_12429096_SNP [dm6]	T	A	1.344e^-8	8.331e^-5	INTRON toe
X	10055554	X_10055554_INS [dm3] X_10161521_INS [dm6]	A	GC	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
X	10055639	X_10055639_SNP [dm3] X_10161606_SNP [dm6]	G	T	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
X	10055748	X_10055748_SNP [dm3] X_10161715_SNP [dm6]	C	G	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
X	10055763	X_10055763_SNP [dm3] X_10161730_SNP [dm6]	A	T	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
X	10056782	X_10056782_SNP [dm3] X_10162749_SNP [dm6]	A	T	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
X	10056785	X_10056785_SNP [dm3] X_10162752_SNP [dm6]	T	G	1.344e^-8	8.331e^-5	INTRON CR44894 & 1 other
2R	12273494	2R_12273494_SNP [dm3] 2R_16385989_SNP [dm6]	T	G	1.411e^-8	8.718e^-5	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14439892	2R_14439892_SNP [dm3] 2R_18552387_SNP [dm6]	G	T	1.609e^-8	9.875e^-5	INTERGENIC
2R	16612983	2R_16612983_SNP [dm3] 2R_20725478_SNP [dm6]	C	A	1.609e^-8	9.875e^-5	INTRON dpr
2R	12676680	2R_12676680_SNP [dm3] 2R_16789175_SNP [dm6]	C	T	1.626e^-8	9.912e^-5	INTRON CG5522
2R	3274351	2R_3274351_SNP [dm3] 2R_7386846_SNP [dm6]	G	A	1.626e^-8	9.912e^-5	NON_SYNONYMOUS_CODING cos UPSTREAM CG11107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9146157	2R_9146157_SNP [dm3] 2R_13258652_SNP [dm6]	G	T	1.639e^-8	9.956e^-5	DOWNSTREAM CG10799 INTERGENIC
2R	9146898	2R_9146898_SNP [dm3] 2R_13259393_SNP [dm6]	A	G	1.646e^-8	9.969e^-5	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2L	1412511	2L_1412511_SNP [dm3] 2L_1412511_SNP [dm6]	T	G	1.873e^-8	1.119e^-4	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4647918	3L_4647918_SNP [dm3] 3L_4647918_SNP [dm6]	A	G	1.873e^-8	1.119e^-4	UPSTREAM CG32238 INTRON axo
3L	4647925	3L_4647925_INS [dm3] 3L_4647925_INS [dm6]	C	CAA	1.873e^-8	1.119e^-4	UPSTREAM CG32238 INTRON axo
3L	4647928	3L_4647928_SNP [dm3] 3L_4647928_SNP [dm6]	A	G	1.873e^-8	1.119e^-4	UPSTREAM CG32238 INTRON axo
2L	4161273	2L_4161273_SNP [dm3] 2L_4161273_SNP [dm6]	T	A	1.986e^-8	1.183e^-4	INTERGENIC
X	10055540	X_10055540_SNP [dm3] X_10161507_SNP [dm6]	A	G	2.101e^-8	1.243e^-4	INTRON CR44894 & 1 other
X	10055545	X_10055545_SNP [dm3] X_10161512_SNP [dm6]	A	G	2.101e^-8	1.243e^-4	INTRON CR44894 & 1 other
X	10055646	X_10055646_INS [dm3] X_10161613_INS [dm6]	A	TTTTTTTCT	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
X	10056617	X_10056617_SNP [dm3] X_10162584_SNP [dm6]	A	G	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
X	10056816	X_10056816_SNP [dm3] X_10162783_SNP [dm6]	T	C	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
X	10056819	X_10056819_DEL [dm3] X_10162786_DEL [dm6]	TAGCTCTTTAAAT...	T	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
X	10056834	X_10056834_SNP [dm3] X_10162801_SNP [dm6]	A	G	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
X	10056841	X_10056841_SNP [dm3] X_10162808_SNP [dm6]	C	T	2.327e^-8	1.350e^-4	INTRON CR44894 & 1 other
3L	12422190	3L_12422190_SNP [dm3] 3L_12429090_SNP [dm6]	C	G	2.345e^-8	1.356e^-4	INTRON toe
2R	9146272	2R_9146272_SNP [dm3] 2R_13258767_SNP [dm6]	T	A	2.371e^-8	1.367e^-4	DOWNSTREAM CG10799 INTERGENIC
2L	9996725	2L_9996725_SNP [dm3] 2L_9996725_SNP [dm6]	A	T	2.531e^-8	1.455e^-4	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12273495	2R_12273495_SNP [dm3] 2R_16385990_SNP [dm6]	T	A	2.540e^-8	1.455e^-4	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10696393	2L_10696393_SNP [dm3] 2L_10696393_SNP [dm6]	A	T	2.611e^-8	1.477e^-4	SYNONYMOUS_CODING CG7300 EXON CR44181
2L	2947514	2L_2947514_SNP [dm3] 2L_2947514_SNP [dm6]	G	A	2.611e^-8	1.477e^-4	INTRON lilli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9639576	2L_9639576_SNP [dm3] 2L_9639576_SNP [dm6]	G	A	2.611e^-8	1.477e^-4	INTRON Apoltp
3L	2098320	3L_2098320_SNP [dm3] 3L_2098320_SNP [dm6]	G	T	2.611e^-8	1.477e^-4	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5386452	2L_5386452_SNP [dm3] 2L_5386452_SNP [dm6]	T	G	3.283e^-8	1.852e^-4	INTERGENIC
X	10061177	X_10061177_SNP [dm3] X_10167144_SNP [dm6]	T	C	3.653e^-8	2.044e^-4	INTRON CR44894 & 1 other
X	5804554	X_5804554_SNP [dm3] X_5910521_SNP [dm6]	T	C	3.653e^-8	2.044e^-4	SYNONYMOUS_CODING CG12236 INTRON CG12236
X	10060206	X_10060206_SNP [dm3] X_10166173_SNP [dm6]	T	C	3.658e^-8	2.044e^-4	INTRON CR44894 & 1 other
2L	10446054	2L_10446054_SNP [dm3] 2L_10446054_SNP [dm6]	G	T	4.025e^-8	2.154e^-4	INTRON loh
2L	10517339	2L_10517339_SNP [dm3] 2L_10517339_SNP [dm6]	T	C	4.025e^-8	2.154e^-4	UTR_5_PRIME Lrr47 UPSTREAM Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10517479	2L_10517479_SNP [dm3] 2L_10517479_SNP [dm6]	A	G	4.025e^-8	2.154e^-4	SYNONYMOUS_CODING Lrr47 UPSTREAM Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10698672	2L_10698672_SNP [dm3] 2L_10698672_SNP [dm6]	G	C	4.025e^-8	2.154e^-4	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC
2L	1336424	2L_1336424_SNP [dm3] 2L_1336424_SNP [dm6]	G	T	4.025e^-8	2.154e^-4	DOWNSTREAM CG5440 INTERGENIC
2L	1356103	2L_1356103_SNP [dm3] 2L_1356103_SNP [dm6]	C	T	4.025e^-8	2.154e^-4	UPSTREAM CG5565 INTERGENIC
2L	20326418	2L_20326418_SNP [dm3] 2L_20326418_SNP [dm6]	G	A	4.025e^-8	2.154e^-4	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20326420	2L_20326420_SNP [dm3] 2L_20326420_SNP [dm6]	A	C	4.025e^-8	2.154e^-4	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3873102	2L_3873102_SNP [dm3] 2L_3873102_SNP [dm6]	G	A	4.025e^-8	2.154e^-4	SYNONYMOUS_CODING capu UPSTREAM CG31957	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4496866	2L_4496866_SNP [dm3] 2L_4496866_SNP [dm6]	G	C	4.025e^-8	2.154e^-4	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	612618	2L_612618_SNP [dm3] 2L_612618_SNP [dm6]	A	T	4.025e^-8	2.154e^-4	INTERGENIC
2L	7075893	2L_7075893_DEL [dm3] 2L_7075893_DEL [dm6]	CTA	G	4.025e^-8	2.154e^-4	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8984586	2L_8984586_SNP [dm3] 2L_8984586_SNP [dm6]	G	A	4.025e^-8	2.154e^-4	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9082157	2L_9082157_SNP [dm3] 2L_9082157_SNP [dm6]	T	G	4.025e^-8	2.154e^-4	INTERGENIC
2L	11649030	2L_11649030_SNP [dm3] 2L_11649030_SNP [dm6]	G	T	4.032e^-8	2.154e^-4	UPSTREAM CG6614 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	6472399	3L_6472399_INS [dm3] 3L_6479299_INS [dm6]	A	AC	4.051e^-8	2.158e^-4	INTRON CG42747
2L	9202106	2L_9202106_INS [dm3] 2L_9202106_INS [dm6]	C	CTAGGCAC	4.479e^-8	2.362e^-4	INTRON tai
X	15515542	X_15515542_SNP [dm3] X_15621509_SNP [dm6]	A	T	4.479e^-8	2.362e^-4	INTRON sog
2L	13319296	2L_13319296_SNP [dm3] 2L_13319296_SNP [dm6]	T	G	4.499e^-8	2.362e^-4	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4204933	2L_4204933_SNP [dm3] 2L_4204933_SNP [dm6]	G	C	4.499e^-8	2.362e^-4	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	18189907	2R_18189907_SNP [dm3] 2R_22302402_SNP [dm6]	T	C	4.499e^-8	2.362e^-4	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
2L	3462880	2L_3462880_SNP [dm3] 2L_3462880_SNP [dm6]	T	A	5.596e^-8	2.755e^-4	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
2L	4089204	2L_4089204_SNP [dm3] 2L_4089204_SNP [dm6]	A	G	5.596e^-8	2.755e^-4	INTRON ed
2L	4089220	2L_4089220_SNP [dm3] 2L_4089220_SNP [dm6]	A	G	5.596e^-8	2.755e^-4	INTRON ed
2L	4089261	2L_4089261_SNP [dm3] 2L_4089261_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	INTRON ed
2L	4089271	2L_4089271_DEL [dm3] 2L_4089271_DEL [dm6]	AGCGAAA	A	5.596e^-8	2.755e^-4	INTRON ed
2L	4089281	2L_4089281_SNP [dm3] 2L_4089281_SNP [dm6]	T	A	5.596e^-8	2.755e^-4	INTRON ed
2L	4089313	2L_4089313_SNP [dm3] 2L_4089313_SNP [dm6]	A	T	5.596e^-8	2.755e^-4	INTRON ed
2L	4089321	2L_4089321_SNP [dm3] 2L_4089321_SNP [dm6]	A	T	5.596e^-8	2.755e^-4	INTRON ed
2L	4089380	2L_4089380_SNP [dm3] 2L_4089380_SNP [dm6]	A	G	5.596e^-8	2.755e^-4	INTRON ed	TF binding site BDTNP1_TFBS_da
2L	4686525	2L_4686525_SNP [dm3] 2L_4686525_SNP [dm6]	G	A	5.596e^-8	2.755e^-4	NON_SYNONYMOUS_CODING CG11929 UPSTREAM Elba3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4687458	2L_4687458_SNP [dm3] 2L_4687458_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5889652	2L_5889652_SNP [dm3] 2L_5889652_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	INTERGENIC
2L	5889659	2L_5889659_SNP [dm3] 2L_5889659_SNP [dm6]	T	C	5.596e^-8	2.755e^-4	INTERGENIC
2L	5890044	2L_5890044_SNP [dm3] 2L_5890044_SNP [dm6]	T	C	5.596e^-8	2.755e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11935851	2R_11935851_SNP [dm3] 2R_16048346_SNP [dm6]	T	C	5.596e^-8	2.755e^-4	SYNONYMOUS_CODING CG8405	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12242857	2R_12242857_SNP [dm3] 2R_16355352_SNP [dm6]	T	C	5.596e^-8	2.755e^-4	UPSTREAM CG30098 INTERGENIC
2R	12242885	2R_12242885_SNP [dm3] 2R_16355380_SNP [dm6]	G	A	5.596e^-8	2.755e^-4	UPSTREAM CG30098 INTERGENIC
2R	15152760	2R_15152760_SNP [dm3] 2R_19265255_SNP [dm6]	G	A	5.596e^-8	2.755e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	8140807	3L_8140807_SNP [dm3] 3L_8147707_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	INTRON CG13676	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24763642	3R_24763642_SNP [dm3] 3R_28937920_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	INTRON CG14521
3R	7730929	3R_7730929_SNP [dm3] 3R_11905207_SNP [dm6]	C	T	5.596e^-8	2.755e^-4	INTRON Cad87A
3R	7742827	3R_7742827_SNP [dm3] 3R_11917105_SNP [dm6]	G	C	5.596e^-8	2.755e^-4	INTRON Cad87A
3R	8888492	3R_8888492_SNP [dm3] 3R_13062770_SNP [dm6]	G	A	5.596e^-8	2.755e^-4	INTRON sim
2L	4208782	2L_4208782_SNP [dm3] 2L_4208782_SNP [dm6]	G	A	5.731e^-8	2.812e^-4	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2L	1125509	2L_1125509_SNP [dm3] 2L_1125509_SNP [dm6]	G	A	5.743e^-8	2.812e^-4	INTRON Pino
2L	17157826	2L_17157826_SNP [dm3] 2L_17157826_SNP [dm6]	G	T	6.553e^-8	3.166e^-4	INTRON beat-IIIa & 1 other
2L	18424030	2L_18424030_SNP [dm3] 2L_18424030_SNP [dm6]	C	T	6.553e^-8	3.166e^-4	INTERGENIC
2R	13476731	2R_13476731_SNP [dm3] 2R_17589226_SNP [dm6]	G	T	6.553e^-8	3.166e^-4	SYNONYMOUS_CODING RhoGAP54D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14450334	2R_14450334_SNP [dm3] 2R_18562829_SNP [dm6]	T	C	6.553e^-8	3.166e^-4	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10907155	3L_10907155_SNP [dm3] 3L_10914055_SNP [dm6]	G	T	6.553e^-8	3.166e^-4	INTERGENIC
2L	1734153	2L_1734153_SNP [dm3] 2L_1734153_SNP [dm6]	G	A	6.797e^-8	3.262e^-4	INTRON CG17646
2L	5135031	2L_5135031_SNP [dm3] 2L_5135031_SNP [dm6]	G	T	6.797e^-8	3.262e^-4	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10698276	2L_10698276_SNP [dm3] 2L_10698276_SNP [dm6]	A	G	6.879e^-8	3.262e^-4	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	4713168	2L_4713168_SNP [dm3] 2L_4713168_SNP [dm6]	G	A	6.879e^-8	3.262e^-4	INTRON CG34351
2L	8422790	2L_8422790_SNP [dm3] 2L_8422790_SNP [dm6]	C	G	6.879e^-8	3.262e^-4	INTRON Akap200	TF binding site BDTNP1_TFBS_z
2L	9083309	2L_9083309_SNP [dm3] 2L_9083309_SNP [dm6]	C	G	6.879e^-8	3.262e^-4	UPSTREAM Toll-4 INTERGENIC
2R	6032906	2R_6032906_SNP [dm3] 2R_10145401_SNP [dm6]	T	C	6.879e^-8	3.262e^-4	DOWNSTREAM KCNQ INTRON CG18011
2L	2836391	2L_2836391_SNP [dm3] 2L_2836391_SNP [dm6]	T	A	7.062e^-8	3.341e^-4	INTRON CG3119
2L	13319109	2L_13319109_SNP [dm3] 2L_13319109_SNP [dm6]	A	G	7.686e^-8	3.617e^-4	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1965141	2L_1965141_SNP [dm3] 2L_1965141_SNP [dm6]	T	G	7.686e^-8	3.617e^-4	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
2L	9600734	2L_9600734_SNP [dm3] 2L_9600734_SNP [dm6]	T	C	9.387e^-8	3.928e^-4	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2419932	2L_2419932_SNP [dm3] 2L_2419932_SNP [dm6]	T	C	9.414e^-8	3.928e^-4	UTR_5_PRIME CG34447 UPSTREAM CG34447 & 1 other
2L	4017621	2L_4017621_SNP [dm3] 2L_4017621_SNP [dm6]	C	T	9.414e^-8	3.928e^-4	INTERGENIC
2L	4089429	2L_4089429_SNP [dm3] 2L_4089429_SNP [dm6]	G	C	9.414e^-8	3.928e^-4	INTRON ed	TF binding site BDTNP1_TFBS_da
2R	16663793	2R_16663793_SNP [dm3] 2R_20776288_SNP [dm6]	C	A	9.414e^-8	3.928e^-4	NON_SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
3L	4897065	3L_4897065_SNP [dm3] 3L_4897065_SNP [dm6]	G	A	9.414e^-8	3.928e^-4	NON_SYNONYMOUS_CODING CG13705
2L	13134621	2L_13134621_SNP [dm3] 2L_13134621_SNP [dm6]	C	T	9.479e^-8	3.928e^-4	SYNONYMOUS_CODING CG5122
2L	13145641	2L_13145641_SNP [dm3] 2L_13145641_SNP [dm6]	C	A	9.479e^-8	3.928e^-4	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13145650	2L_13145650_SNP [dm3] 2L_13145650_SNP [dm6]	C	T	9.479e^-8	3.928e^-4	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
2L	15638577	2L_15638577_SNP [dm3] 2L_15638577_SNP [dm6]	T	C	9.479e^-8	3.928e^-4	INTERGENIC
2L	2183535	2L_2183535_SNP [dm3] 2L_2183535_SNP [dm6]	A	T	9.479e^-8	3.928e^-4	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3462864	2L_3462864_SNP [dm3] 2L_3462864_SNP [dm6]	T	G	9.479e^-8	3.928e^-4	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
2L	4089289	2L_4089289_SNP [dm3] 2L_4089289_SNP [dm6]	C	A	9.479e^-8	3.928e^-4	INTRON ed
2L	4688200	2L_4688200_SNP [dm3] 2L_4688200_SNP [dm6]	C	T	9.479e^-8	3.928e^-4	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG11929 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4234334	X_4234334_SNP [dm3] X_4340301_SNP [dm6]	G	A	9.479e^-8	3.928e^-4	INTRON norpA
2L	2391329	2L_2391329_SNP [dm3] 2L_2391329_SNP [dm6]	G	A	9.535e^-8	3.928e^-4	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	3463469	2L_3463469_SNP [dm3] 2L_3463469_SNP [dm6]	T	G	9.535e^-8	3.928e^-4	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3467728	2L_3467728_SNP [dm3] 2L_3467728_SNP [dm6]	A	G	9.535e^-8	3.928e^-4	UTR_3_PRIME CG3238 DOWNSTREAM Pdsw
2L	4017095	2L_4017095_SNP [dm3] 2L_4017095_SNP [dm6]	C	G	9.535e^-8	3.928e^-4	INTERGENIC
2L	4018495	2L_4018495_SNP [dm3] 2L_4018495_SNP [dm6]	G	A	9.535e^-8	3.928e^-4	INTERGENIC
2L	4694453	2L_4694453_SNP [dm3] 2L_4694453_SNP [dm6]	G	T	9.535e^-8	3.928e^-4	UPSTREAM CG34351 INTERGENIC
2L	4694566	2L_4694566_SNP [dm3] 2L_4694566_SNP [dm6]	G	A	9.535e^-8	3.928e^-4	UPSTREAM CG34351 INTERGENIC
2R	594514	2R_594514_SNP [dm3] 2R_4707009_SNP [dm6]	C	T	9.535e^-8	3.928e^-4	INTRON Nipped-B
3L	18489534	3L_18489534_INS [dm3] 3L_18496434_INS [dm6]	G	GACAATCCAA	1.004e^-7	3.928e^-4	INTRON AstC-R2
3L	10793888	3L_10793888_DEL [dm3] 3L_10800788_DEL [dm6]	TGAGGAAATGAAAAGTT...	T	1.013e^-7	3.928e^-4	UPSTREAM CG12523 INTERGENIC
2R	7795946	2R_7795946_SNP [dm3] 2R_11908441_SNP [dm6]	T	C	1.046e^-7	3.928e^-4	INTRON CG13183	TF binding site mE1_TFBS_inv
2L	9184058	2L_9184058_SNP [dm3] 2L_9184058_SNP [dm6]	C	A	1.081e^-7	3.928e^-4	INTRON tai
2R	9150249	2R_9150249_SNP [dm3] 2R_13262744_SNP [dm6]	C	A	1.099e^-7	3.928e^-4	SYNONYMOUS_CODING CG42319 UTR_5_PRIME CG42319
2L	18425702	2L_18425702_INS [dm3] 2L_18425702_INS [dm6]	C	CAC	1.112e^-7	3.928e^-4	INTERGENIC
3L	11153059	3L_11153059_SNP [dm3] 3L_11159959_SNP [dm6]	G	A	1.112e^-7	3.928e^-4	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
3L	11153095	3L_11153095_SNP [dm3] 3L_11159995_SNP [dm6]	C	T	1.112e^-7	3.928e^-4	INTRON CG32082	TF binding site mE1_TFBS_chinmo
3R	14344049	3R_14344049_INS [dm3] 3R_18518327_INS [dm6]	T	TCCATTATTAAC...	1.112e^-7	3.928e^-4	INTRON fru
2L	10067304	2L_10067304_SNP [dm3] 2L_10067304_SNP [dm6]	A	C	1.135e^-7	3.928e^-4	INTRON CG44153
2L	10067313	2L_10067313_SNP [dm3] 2L_10067313_SNP [dm6]	T	A	1.135e^-7	3.928e^-4	INTRON CG44153
2L	10261757	2L_10261757_SNP [dm3] 2L_10261757_SNP [dm6]	A	T	1.135e^-7	3.928e^-4	UPSTREAM Pten DOWNSTREAM Rsf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	10266346	2L_10266346_SNP [dm3] 2L_10266346_SNP [dm6]	T	A	1.135e^-7	3.928e^-4	UPSTREAM CG4953 INTRON Mob3
2L	1301610	2L_1301610_SNP [dm3] 2L_1301610_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC
2L	1303992	2L_1303992_SNP [dm3] 2L_1303992_SNP [dm6]	T	G	1.135e^-7	3.928e^-4	INTERGENIC
2L	1335438	2L_1335438_DEL [dm3] 2L_1335438_DEL [dm6]	CTGGAGTTCGCAGCTAA...	C	1.135e^-7	3.928e^-4	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
2L	1388358	2L_1388358_SNP [dm3] 2L_1388358_SNP [dm6]	G	C	1.135e^-7	3.928e^-4	INTRON lea
2L	18423634	2L_18423634_SNP [dm3] 2L_18423634_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC
2L	18438263	2L_18438263_SNP [dm3] 2L_18438263_SNP [dm6]	T	A	1.135e^-7	3.928e^-4	INTERGENIC
2L	20555383	2L_20555383_SNP [dm3] 2L_20555383_SNP [dm6]	G	C	1.135e^-7	3.928e^-4	INTERGENIC
2L	3816429	2L_3816429_SNP [dm3] 2L_3816429_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	4143499	2L_4143499_SNP [dm3] 2L_4143499_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5294111	2L_5294111_SNP [dm3] 2L_5294111_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	5294299	2L_5294299_DEL [dm3] 2L_5294299_DEL [dm6]	AG	A	1.135e^-7	3.928e^-4	INTRON vri
2L	5294397	2L_5294397_SNP [dm3] 2L_5294397_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON vri
2L	5648680	2L_5648680_SNP [dm3] 2L_5648680_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	INTRON CG31646
2L	7077442	2L_7077442_SNP [dm3] 2L_7077442_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON Pvf2
2L	7078196	2L_7078196_DEL [dm3] 2L_7078196_DEL [dm6]	GTG	G	1.135e^-7	3.928e^-4	DOWNSTREAM CR44611 INTRON Pvf2
2L	7386265	2L_7386265_SNP [dm3] 2L_7386265_SNP [dm6]	A	C	1.135e^-7	3.928e^-4	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
2L	7386406	2L_7386406_SNP [dm3] 2L_7386406_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
2L	7388457	2L_7388457_SNP [dm3] 2L_7388457_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7400177	2L_7400177_SNP [dm3] 2L_7400177_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	DOWNSTREAM CR44079 INTERGENIC
2L	8420786	2L_8420786_SNP [dm3] 2L_8420786_SNP [dm6]	T	G	1.135e^-7	3.928e^-4	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	874409	2L_874409_SNP [dm3] 2L_874409_SNP [dm6]	T	G	1.135e^-7	3.928e^-4	DOWNSTREAM PNUTS INTRON PNUTS
2L	9095488	2L_9095488_SNP [dm3] 2L_9095488_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTERGENIC
2L	944168	2L_944168_SNP [dm3] 2L_944168_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON CG4341
2R	11499396	2R_11499396_SNP [dm3] 2R_15611891_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTERGENIC
2R	11499640	2R_11499640_SNP [dm3] 2R_15612135_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTERGENIC
2R	11503093	2R_11503093_SNP [dm3] 2R_15615588_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11505890	2R_11505890_SNP [dm3] 2R_15618385_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11506182	2R_11506182_SNP [dm3] 2R_15618677_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11506370	2R_11506370_SNP [dm3] 2R_15618865_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11508395	2R_11508395_SNP [dm3] 2R_15620890_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11508889	2R_11508889_SNP [dm3] 2R_15621384_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11511178	2R_11511178_SNP [dm3] 2R_15623673_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	11512455	2R_11512455_SNP [dm3] 2R_15624950_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11512586	2R_11512586_SNP [dm3] 2R_15625081_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11516738	2R_11516738_SNP [dm3] 2R_15629233_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON CG42524
2R	11525371	2R_11525371_SNP [dm3] 2R_15637866_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING CG42524
2R	11527250	2R_11527250_SNP [dm3] 2R_15639745_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON CG42524
2R	12104618	2R_12104618_SNP [dm3] 2R_16217113_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON mrj
2R	13809785	2R_13809785_SNP [dm3] 2R_17922280_SNP [dm6]	C	A	1.135e^-7	3.928e^-4	INTRON Elk
2R	17122549	2R_17122549_SNP [dm3] 2R_21235044_SNP [dm6]	A	T	1.135e^-7	3.928e^-4	INTRON ASPP
2R	18432195	2R_18432195_SNP [dm3] 2R_22544690_SNP [dm6]	A	T	1.135e^-7	3.928e^-4	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19642366	2R_19642366_SNP [dm3] 2R_23754843_SNP [dm6]	T	A	1.135e^-7	3.928e^-4	INTRON CG9850
2R	19642368	2R_19642368_SNP [dm3] 2R_23754845_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON CG9850
2R	20140908	2R_20140908_SNP [dm3] 2R_24253385_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20182485	2R_20182485_SNP [dm3] 2R_24294962_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	UPSTREAM CG3394 DOWNSTREAM mir-4985 INTRON CG3394	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20182669	2R_20182669_SNP [dm3] 2R_24295146_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	UPSTREAM CG3394 DOWNSTREAM mir-4985 INTRON CG3394	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	20182844	2R_20182844_SNP [dm3] 2R_24295321_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	UPSTREAM CG3394 DOWNSTREAM mir-4985 INTRON CG3394	TF binding site mE1_TFBS_chinmo
2R	6348444	2R_6348444_SNP [dm3] 2R_10460939_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING Galphao UTR_5_PRIME Galphao	TF binding site mE1_TFBS_inv
2R	7812643	2R_7812643_SNP [dm3] 2R_11925138_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC
3L	12098627	3L_12098627_SNP [dm3] 3L_12105527_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC
3L	12606592	3L_12606592_SNP [dm3] 3L_12613492_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON caup
3L	13348581	3L_13348581_DEL [dm3] 3L_13355481_DEL [dm6]	ACA	A	1.135e^-7	3.928e^-4	UPSTREAM Nplp2 DOWNSTREAM CG17687 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	1667670	3L_1667670_SNP [dm3] 3L_1667670_SNP [dm6]	T	G	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING RpL23A UPSTREAM snoRNA:Me28S-A2634b & 2 others	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	21804067	3L_21804067_SNP [dm3] 3L_21810967_SNP [dm6]	A	C	1.135e^-7	3.928e^-4	INTRON eg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2914422	3L_2914422_SNP [dm3] 3L_2914422_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	DOWNSTREAM CG9970 INTRON Shab	TF binding site BDTNP1_TFBS_dl
3L	3576595	3L_3576595_SNP [dm3] 3L_3576595_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	INTRON Eip63E
3L	4022709	3L_4022709_SNP [dm3] 3L_4022709_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	DOWNSTREAM CG11594 INTRON Mul1
3L	4022853	3L_4022853_SNP [dm3] 3L_4022853_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING Mul1 DOWNSTREAM CG11594
3L	7780744	3L_7780744_SNP [dm3] 3L_7787644_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON CG32369
3L	7919979	3L_7919979_SNP [dm3] 3L_7926879_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON syd
3L	7923595	3L_7923595_SNP [dm3] 3L_7930495_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING syd
3L	7928630	3L_7928630_SNP [dm3] 3L_7935530_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	UTR_5_PRIME syd UPSTREAM Srp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7930578	3L_7930578_SNP [dm3] 3L_7937478_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7931333	3L_7931333_SNP [dm3] 3L_7938233_SNP [dm6]	C	A	1.135e^-7	3.928e^-4	DOWNSTREAM Srp9 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7931728	3L_7931728_SNP [dm3] 3L_7938628_SNP [dm6]	C	A	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7931729	3L_7931729_SNP [dm3] 3L_7938629_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7932507	3L_7932507_SNP [dm3] 3L_7939407_SNP [dm6]	T	G	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7932559	3L_7932559_SNP [dm3] 3L_7939459_SNP [dm6]	A	T	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7932584	3L_7932584_SNP [dm3] 3L_7939484_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7933220	3L_7933220_SNP [dm3] 3L_7940120_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC
3L	9998595	3L_9998595_SNP [dm3] 3L_10005495_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTRON dpr6
3R	10203132	3R_10203132_SNP [dm3] 3R_14377410_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	UPSTREAM CR44943 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10204231	3R_10204231_SNP [dm3] 3R_14378509_SNP [dm6]	G	C	1.135e^-7	3.928e^-4	INTERGENIC
3R	10204381	3R_10204381_SNP [dm3] 3R_14378659_SNP [dm6]	C	G	1.135e^-7	3.928e^-4	INTERGENIC
3R	10204382	3R_10204382_SNP [dm3] 3R_14378660_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTERGENIC
3R	10204383	3R_10204383_INS [dm3] 3R_14378661_INS [dm6]	T	TAT	1.135e^-7	3.928e^-4	INTERGENIC
3R	10204741	3R_10204741_SNP [dm3] 3R_14379019_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC
3R	10213840	3R_10213840_SNP [dm3] 3R_14388118_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC
3R	10213841	3R_10213841_SNP [dm3] 3R_14388119_SNP [dm6]	A	T	1.135e^-7	3.928e^-4	INTERGENIC
3R	10614348	3R_10614348_SNP [dm3] 3R_14788626_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	SPLICE_SITE_REGION jvl INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11991788	3R_11991788_SNP [dm3] 3R_16166066_SNP [dm6]	C	A	1.135e^-7	3.928e^-4	INTRON CG6006	TF binding site mE1_TFBS_chinmo
3R	11991848	3R_11991848_SNP [dm3] 3R_16166126_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON CG6006	TF binding site mE1_TFBS_chinmo
3R	12249655	3R_12249655_SNP [dm3] 3R_16423933_SNP [dm6]	C	T	1.135e^-7	3.928e^-4	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	15694569	3R_15694569_SNP [dm3] 3R_19868847_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	SPLICE_SITE_REGION CG4562 INTRON CG4562	TF binding site mE1_TFBS_cad
3R	15694587	3R_15694587_SNP [dm3] 3R_19868865_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad
3R	15702325	3R_15702325_SNP [dm3] 3R_19876603_SNP [dm6]	C	G	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING CG17186 UPSTREAM CG4562	TF binding site mE1_TFBS_sens
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
3R	3569801	3R_3569801_SNP [dm3] 3R_7744079_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTERGENIC
3R	7995333	3R_7995333_SNP [dm3] 3R_12169611_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTERGENIC
X	16430744	X_16430744_SNP [dm3] X_16536711_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTERGENIC
X	1790352	X_1790352_SNP [dm3] X_1896319_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING arm	TF binding site mE1_TFBS_sens
X	1794928	X_1794928_SNP [dm3] X_1900895_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	SYNONYMOUS_CODING CG32803 UPSTREAM arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	19009460	X_19009460_SNP [dm3] X_19115427_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTERGENIC
X	1945120	X_1945120_DEL [dm3] X_2051087_DEL [dm6]	CA	C	1.135e^-7	3.928e^-4	UPSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1945233	X_1945233_SNP [dm3] X_2051200_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1946652	X_1946652_SNP [dm3] X_2052619_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	UPSTREAM CG4313 INTRON CG4313	TF binding site mE1_TFBS_cad
X	20028237	X_20028237_SNP [dm3] X_20134204_SNP [dm6]	C	G	1.135e^-7	3.928e^-4	INTRON CG15322
X	313888	X_313888_SNP [dm3] X_419855_SNP [dm6]	G	T	1.135e^-7	3.928e^-4	INTRON CG32816	TF binding site mE1_TFBS_HSA
X	343776	X_343776_SNP [dm3] X_449743_SNP [dm6]	A	G	1.135e^-7	3.928e^-4	INTRON CG32816
X	5654995	X_5654995_SNP [dm3] X_5760962_SNP [dm6]	G	A	1.135e^-7	3.928e^-4	INTRON MAPk-Ak2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	5655125	X_5655125_SNP [dm3] X_5761092_SNP [dm6]	T	C	1.135e^-7	3.928e^-4	INTRON MAPk-Ak2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	5852037	X_5852037_SNP [dm3] X_5958004_SNP [dm6]	C	A	1.135e^-7	3.928e^-4	UTR_3_PRIME CG6067 DOWNSTREAM fs_1_M3
X	5966909	X_5966909_SNP [dm3] X_6072876_SNP [dm6]	T	A	1.135e^-7	3.928e^-4	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
3L	13823767	3L_13823767_INS [dm3] 3L_13830667_INS [dm6]	A	AA	1.224e^-7	4.226e^-4	INTERGENIC
X	13907585	X_13907585_SNP [dm3] X_14013552_SNP [dm6]	C	T	1.331e^-7	4.409e^-4	INTERGENIC
2L	10025716	2L_10025716_SNP [dm3] 2L_10025716_SNP [dm6]	A	T	1.413e^-7	4.409e^-4	UPSTREAM CG13127 INTERGENIC
3L	14961999	3L_14961999_DEL [dm3] 3L_14968899_DEL [dm6]	TTTTTCATCAAGTTTAT...	T	1.522e^-7	4.409e^-4	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	893394	2L_893394_SNP [dm3] 2L_893394_SNP [dm6]	T	G	1.566e^-7	4.409e^-4	INTERGENIC
2R	11506046	2R_11506046_SNP [dm3] 2R_15618541_SNP [dm6]	C	A	1.566e^-7	4.409e^-4	INTRON CG42524
2L	972689	2L_972689_SNP [dm3] 2L_972689_SNP [dm6]	T	G	1.585e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15089526	X_15089526_SNP [dm3] X_15195493_SNP [dm6]	C	A	1.585e^-7	4.409e^-4	INTERGENIC
2L	4089250	2L_4089250_SNP [dm3] 2L_4089250_SNP [dm6]	A	T	1.594e^-7	4.409e^-4	INTRON ed
2L	4089263	2L_4089263_SNP [dm3] 2L_4089263_SNP [dm6]	G	A	1.594e^-7	4.409e^-4	INTRON ed
X	11084008	X_11084008_DEL [dm3] X_11189975_DEL [dm6]	AA	A	1.594e^-7	4.409e^-4	INTERGENIC
2L	15437987	2L_15437987_INS [dm3] 2L_15437987_INS [dm6]	TG	CAC	1.605e^-7	4.409e^-4	INTERGENIC
2L	4089226	2L_4089226_INS [dm3] 2L_4089226_INS [dm6]	A	AC	1.605e^-7	4.409e^-4	INTRON ed
2L	4177951	2L_4177951_SNP [dm3] 2L_4177951_SNP [dm6]	C	T	1.605e^-7	4.409e^-4	INTERGENIC
2L	4686365	2L_4686365_SNP [dm3] 2L_4686365_SNP [dm6]	A	G	1.605e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG11929	TF binding site BDTNP1_TFBS_twi
2L	4687628	2L_4687628_SNP [dm3] 2L_4687628_SNP [dm6]	A	T	1.605e^-7	4.409e^-4	UTR_5_PRIME Elba3 DOWNSTREAM CG11929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6389143	2L_6389143_SNP [dm3] 2L_6389143_SNP [dm6]	C	T	1.609e^-7	4.409e^-4	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd
2L	14274259	2L_14274259_SNP [dm3] 2L_14274259_SNP [dm6]	G	C	1.614e^-7	4.409e^-4	UPSTREAM CG32971 INTRON wb EXON CR44729
2L	4915163	2L_4915163_SNP [dm3] 2L_4915163_SNP [dm6]	C	T	1.614e^-7	4.409e^-4	UTR_5_PRIME hoe1 INTRON hoe1
2L	4918184	2L_4918184_SNP [dm3] 2L_4918184_SNP [dm6]	C	T	1.614e^-7	4.409e^-4	INTRON hoe1
2L	4918187	2L_4918187_SNP [dm3] 2L_4918187_SNP [dm6]	C	T	1.614e^-7	4.409e^-4	INTRON hoe1
2L	921649	2L_921649_SNP [dm3] 2L_921649_SNP [dm6]	A	G	1.614e^-7	4.409e^-4	INTERGENIC
2L	921650	2L_921650_SNP [dm3] 2L_921650_SNP [dm6]	A	T	1.614e^-7	4.409e^-4	INTERGENIC
2L	4694446	2L_4694446_SNP [dm3] 2L_4694446_SNP [dm6]	C	A	1.720e^-7	4.409e^-4	UPSTREAM CG34351 INTERGENIC
2L	4089231	2L_4089231_SNP [dm3] 2L_4089231_SNP [dm6]	G	C	1.781e^-7	4.409e^-4	INTRON ed
2L	17396259	2L_17396259_SNP [dm3] 2L_17396259_SNP [dm6]	G	A	1.832e^-7	4.409e^-4	INTRON CLIP-190
2L	3172920	2L_3172920_SNP [dm3] 2L_3172920_SNP [dm6]	A	T	1.832e^-7	4.409e^-4	UPSTREAM CR44003 DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	3660417	2L_3660417_SNP [dm3] 2L_3660417_SNP [dm6]	G	A	1.832e^-7	4.409e^-4	INTERGENIC
2R	11503513	2R_11503513_SNP [dm3] 2R_15616008_SNP [dm6]	C	T	1.832e^-7	4.409e^-4	INTRON CG42524
2R	13556739	2R_13556739_SNP [dm3] 2R_17669234_SNP [dm6]	T	C	1.832e^-7	4.409e^-4	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	21127486	2R_21127486_SNP [dm3] 2R_25239963_SNP [dm6]	T	A	1.832e^-7	4.409e^-4	INTRON CG9380
2R	21127836	2R_21127836_INS [dm3] 2R_25240313_INS [dm6]	T	TACC	1.832e^-7	4.409e^-4	INTRON CG9380
3L	1447325	3L_1447325_INS [dm3] 3L_1447325_INS [dm6]	G	GCTTC	1.832e^-7	4.409e^-4	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1675648	3L_1675648_INS [dm3] 3L_1675648_INS [dm6]	T	TT	1.832e^-7	4.409e^-4	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23758579	3L_23758579_SNP [dm3] 3L_23765479_SNP [dm6]	C	A	1.832e^-7	4.409e^-4	INTERGENIC	transposable element FlyBase
3L	7919536	3L_7919536_SNP [dm3] 3L_7926436_SNP [dm6]	C	T	1.832e^-7	4.409e^-4	UTR_3_PRIME syd DOWNSTREAM syd
3L	7923739	3L_7923739_SNP [dm3] 3L_7930639_SNP [dm6]	G	A	1.832e^-7	4.409e^-4	INTRON syd
3L	7932586	3L_7932586_SNP [dm3] 3L_7939486_SNP [dm6]	T	C	1.832e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8564773	3L_8564773_SNP [dm3] 3L_8571673_SNP [dm6]	T	G	1.832e^-7	4.409e^-4	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3R	10213844	3R_10213844_SNP [dm3] 3R_14388122_SNP [dm6]	C	A	1.832e^-7	4.409e^-4	INTERGENIC
3R	12297247	3R_12297247_SNP [dm3] 3R_16471525_SNP [dm6]	G	T	1.832e^-7	4.409e^-4	DOWNSTREAM CSN5 INTERGENIC
3R	15694555	3R_15694555_SNP [dm3] 3R_19868833_SNP [dm6]	G	A	1.832e^-7	4.409e^-4	INTRON CG4562	TF binding site mE1_TFBS_cad
3R	16653059	3R_16653059_SNP [dm3] 3R_20827337_SNP [dm6]	A	G	1.832e^-7	4.409e^-4	SPLICE_SITE_REGION CR44047 INTRON AdSS EXON CR44047
3R	2886005	3R_2886005_SNP [dm3] 3R_7060283_SNP [dm6]	A	G	1.832e^-7	4.409e^-4	UTR_3_PRIME dj UPSTREAM djl	regulatory region REDfly_CRMs
3R	4661991	3R_4661991_SNP [dm3] 3R_8836269_SNP [dm6]	G	T	1.832e^-7	4.409e^-4	UTR_3_PRIME pyd INTRON pyd
3R	8857304	3R_8857304_SNP [dm3] 3R_13031582_SNP [dm6]	T	C	1.832e^-7	4.409e^-4	UTR_3_PRIME l_3_87Df UPSTREAM CG12360 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	8862971	3R_8862971_SNP [dm3] 3R_13037249_SNP [dm6]	C	T	1.832e^-7	4.409e^-4	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	9642047	3R_9642047_SNP [dm3] 3R_13816325_SNP [dm6]	T	C	1.832e^-7	4.409e^-4	DOWNSTREAM CR43641 EXON CR43642
X	15134315	X_15134315_INS [dm3] X_15240282_INS [dm6]	A	ATAT	1.832e^-7	4.409e^-4	INTERGENIC
X	15134317	X_15134317_SNP [dm3] X_15240284_SNP [dm6]	G	C	1.832e^-7	4.409e^-4	INTERGENIC
X	15134321	X_15134321_SNP [dm3] X_15240288_SNP [dm6]	T	C	1.832e^-7	4.409e^-4	INTERGENIC
X	15134322	X_15134322_INS [dm3] X_15240289_INS [dm6]	G	GCTTAA	1.832e^-7	4.409e^-4	INTERGENIC
X	15134327	X_15134327_INS [dm3] X_15240294_INS [dm6]	T	TCTGG	1.832e^-7	4.409e^-4	INTERGENIC
X	15134335	X_15134335_SNP [dm3] X_15240302_SNP [dm6]	G	T	1.832e^-7	4.409e^-4	INTERGENIC
X	15134340	X_15134340_INS [dm3] X_15240307_INS [dm6]	G	GTTGTCAAAAGATGAGTCTT...	1.832e^-7	4.409e^-4	INTERGENIC
X	15134344	X_15134344_SNP [dm3] X_15240311_SNP [dm6]	C	G	1.832e^-7	4.409e^-4	INTERGENIC
X	15134348	X_15134348_SNP [dm3] X_15240315_SNP [dm6]	A	T	1.832e^-7	4.409e^-4	INTERGENIC
X	15134350	X_15134350_INS [dm3] X_15240317_INS [dm6]	T	TTAAACTATAAGTAGTGTTG...	1.832e^-7	4.409e^-4	INTERGENIC
X	15134355	X_15134355_INS [dm3] X_15240322_INS [dm6]	G	AC	1.832e^-7	4.409e^-4	INTERGENIC
X	17000993	X_17000993_SNP [dm3] X_17106960_SNP [dm6]	G	A	1.832e^-7	4.409e^-4	UPSTREAM CG5004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	1952558	X_1952558_SNP [dm3] X_2058525_SNP [dm6]	C	T	1.832e^-7	4.409e^-4	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1955944	X_1955944_SNP [dm3] X_2061911_SNP [dm6]	C	T	1.832e^-7	4.409e^-4	UTR_5_PRIME Sik2 DOWNSTREAM CG4281
X	1956285	X_1956285_SNP [dm3] X_2062252_SNP [dm6]	G	C	1.832e^-7	4.409e^-4	UPSTREAM Sik2 DOWNSTREAM CG4281 INTERGENIC
2L	10446109	2L_10446109_SNP [dm3] 2L_10446109_SNP [dm6]	A	T	1.857e^-7	4.409e^-4	INTRON loh
2L	1464130	2L_1464130_SNP [dm3] 2L_1464130_SNP [dm6]	A	G	1.857e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17103654	2L_17103654_SNP [dm3] 2L_17103654_SNP [dm6]	A	G	1.857e^-7	4.409e^-4	INTERGENIC
2L	20469384	2L_20469384_SNP [dm3] 2L_20469384_SNP [dm6]	G	T	1.857e^-7	4.409e^-4	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	3220779	2L_3220779_SNP [dm3] 2L_3220779_SNP [dm6]	T	A	1.857e^-7	4.409e^-4	INTERGENIC
2L	4248621	2L_4248621_SNP [dm3] 2L_4248621_SNP [dm6]	A	C	1.857e^-7	4.409e^-4	INTRON CR44059
2L	4249440	2L_4249440_SNP [dm3] 2L_4249440_SNP [dm6]	G	A	1.857e^-7	4.409e^-4	EXON CR44059	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5375613	2L_5375613_SNP [dm3] 2L_5375613_SNP [dm6]	G	A	1.857e^-7	4.409e^-4	INTERGENIC
2L	9092410	2L_9092410_SNP [dm3] 2L_9092410_SNP [dm6]	A	C	1.857e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2R	11514570	2R_11514570_SNP [dm3] 2R_15627065_SNP [dm6]	G	C	1.857e^-7	4.409e^-4	INTRON CG42524
2R	11514920	2R_11514920_SNP [dm3] 2R_15627415_SNP [dm6]	C	T	1.857e^-7	4.409e^-4	INTRON CG42524
2R	11526156	2R_11526156_SNP [dm3] 2R_15638651_SNP [dm6]	T	C	1.857e^-7	4.409e^-4	INTRON CG42524
3L	12160978	3L_12160978_SNP [dm3] 3L_12167878_SNP [dm6]	T	C	1.857e^-7	4.409e^-4	INTRON Rh7	TF binding site mE1_TFBS_cad
3L	13346436	3L_13346436_SNP [dm3] 3L_13353336_SNP [dm6]	A	C	1.857e^-7	4.409e^-4	SYNONYMOUS_CODING CG17687
3L	1546238	3L_1546238_SNP [dm3] 3L_1546238_SNP [dm6]	C	A	1.857e^-7	4.409e^-4	UTR_5_PRIME Cct1 UPSTREAM CG32313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3350119	3L_3350119_DEL [dm3] 3L_3350119_DEL [dm6]	CT	C	1.857e^-7	4.409e^-4	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7780675	3L_7780675_SNP [dm3] 3L_7787575_SNP [dm6]	A	C	1.857e^-7	4.409e^-4	INTRON CG32369
3R	10215978	3R_10215978_SNP [dm3] 3R_14390256_SNP [dm6]	A	G	1.857e^-7	4.409e^-4	INTERGENIC
X	11311281	X_11311281_SNP [dm3] X_11417248_SNP [dm6]	G	A	1.857e^-7	4.409e^-4	SYNONYMOUS_CODING Or10a
X	16430045	X_16430045_SNP [dm3] X_16536012_SNP [dm6]	C	G	1.857e^-7	4.409e^-4	INTERGENIC
X	16479871	X_16479871_SNP [dm3] X_16585838_SNP [dm6]	A	C	1.857e^-7	4.409e^-4	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
X	16485141	X_16485141_SNP [dm3] X_16591108_SNP [dm6]	A	G	1.857e^-7	4.409e^-4	SYNONYMOUS_CODING Cap	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5075385	X_5075385_SNP [dm3] X_5181352_SNP [dm6]	C	T	1.857e^-7	4.409e^-4	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
X	5655092	X_5655092_SNP [dm3] X_5761059_SNP [dm6]	G	A	1.857e^-7	4.409e^-4	INTRON MAPk-Ak2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	5944598	X_5944598_SNP [dm3] X_6050565_SNP [dm6]	T	A	1.857e^-7	4.409e^-4	UPSTREAM CG5921 DOWNSTREAM CG5937 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6853728	X_6853728_SNP [dm3] X_6959695_SNP [dm6]	G	A	1.857e^-7	4.409e^-4	INTRON CG14431 & 1 other
2L	10555248	2L_10555248_SNP [dm3] 2L_10555248_SNP [dm6]	G	T	1.891e^-7	4.409e^-4	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10626814	2L_10626814_SNP [dm3] 2L_10626814_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	SYNONYMOUS_CODING Trim9
2L	10668533	2L_10668533_SNP [dm3] 2L_10668533_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	INTRON CG31871
2L	10696260	2L_10696260_SNP [dm3] 2L_10696260_SNP [dm6]	G	A	1.891e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG7300 EXON CR44181
2L	10986075	2L_10986075_SNP [dm3] 2L_10986075_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2947518	2L_2947518_SNP [dm3] 2L_2947518_SNP [dm6]	T	A	1.891e^-7	4.409e^-4	INTRON lilli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4207973	2L_4207973_SNP [dm3] 2L_4207973_SNP [dm6]	A	C	1.891e^-7	4.409e^-4	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4500152	2L_4500152_SNP [dm3] 2L_4500152_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7599458	2L_7599458_SNP [dm3] 2L_7599458_SNP [dm6]	G	T	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7599465	2L_7599465_SNP [dm3] 2L_7599465_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7599472	2L_7599472_SNP [dm3] 2L_7599472_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7599497	2L_7599497_SNP [dm3] 2L_7599497_SNP [dm6]	T	C	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7599539	2L_7599539_SNP [dm3] 2L_7599539_SNP [dm6]	A	T	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7610335	2L_7610335_SNP [dm3] 2L_7610335_SNP [dm6]	T	G	1.891e^-7	4.409e^-4	INTRON CG6739
2L	9639393	2L_9639393_SNP [dm3] 2L_9639393_SNP [dm6]	C	G	1.891e^-7	4.409e^-4	INTRON Apoltp
2L	9639662	2L_9639662_SNP [dm3] 2L_9639662_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	INTRON Apoltp
2L	9639668	2L_9639668_DEL [dm3] 2L_9639668_DEL [dm6]	TTTTCC	T	1.891e^-7	4.409e^-4	INTRON Apoltp
2L	9639679	2L_9639679_SNP [dm3] 2L_9639679_SNP [dm6]	G	T	1.891e^-7	4.409e^-4	INTRON Apoltp
2L	9640389	2L_9640389_SNP [dm3] 2L_9640389_SNP [dm6]	G	A	1.891e^-7	4.409e^-4	INTRON Apoltp
2L	9673468	2L_9673468_SNP [dm3] 2L_9673468_SNP [dm6]	G	A	1.891e^-7	4.409e^-4	INTERGENIC
2R	1959634	2R_1959634_SNP [dm3] 2R_6072129_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1674181	3L_1674181_DEL [dm3] 3L_1674181_DEL [dm6]	GC	G	1.891e^-7	4.409e^-4	UPSTREAM CG7991 INTERGENIC
3L	6472127	3L_6472127_SNP [dm3] 3L_6479027_SNP [dm6]	T	C	1.891e^-7	4.409e^-4	INTRON CG42747
3L	6472151	3L_6472151_SNP [dm3] 3L_6479051_SNP [dm6]	C	G	1.891e^-7	4.409e^-4	INTRON CG42747
3R	10230514	3R_10230514_DEL [dm3] 3R_14404792_DEL [dm6]	GTAACTAT	G	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230524	3R_10230524_SNP [dm3] 3R_14404802_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230526	3R_10230526_DEL [dm3] 3R_14404804_DEL [dm6]	TGAACA	T	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230534	3R_10230534_SNP [dm3] 3R_14404812_SNP [dm6]	G	T	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230538	3R_10230538_DEL [dm3] 3R_14404816_DEL [dm6]	GGC	A	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230552	3R_10230552_DEL [dm3] 3R_14404830_DEL [dm6]	AAAC	A	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230557	3R_10230557_MNP [dm3] 3R_14404835_MNP [dm6]	ATT	CAG	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230565	3R_10230565_SNP [dm3] 3R_14404843_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230575	3R_10230575_SNP [dm3] 3R_14404853_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230584	3R_10230584_SNP [dm3] 3R_14404862_SNP [dm6]	G	A	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10230591	3R_10230591_SNP [dm3] 3R_14404869_SNP [dm6]	C	G	1.891e^-7	4.409e^-4	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	12139551	3R_12139551_SNP [dm3] 3R_16313829_SNP [dm6]	A	G	1.891e^-7	4.409e^-4	SYNONYMOUS_CODING Sulf1	TF binding site mE1_TFBS_cad
3R	6846355	3R_6846355_SNP [dm3] 3R_11020633_SNP [dm6]	C	T	1.891e^-7	4.409e^-4	INTRON CG34114
2R	1787597	2R_1787597_SNP [dm3] 2R_5900092_SNP [dm6]	T	G	1.891e^-7	4.409e^-4	INTRON CG43366	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	1782368	2R_1782368_SNP [dm3] 2R_5894863_SNP [dm6]	G	T	1.917e^-7	4.409e^-4	INTRON CG43366
2L	1304006	2L_1304006_SNP [dm3] 2L_1304006_SNP [dm6]	G	T	1.992e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12422408	3L_12422408_DEL [dm3] 3L_12429308_DEL [dm6]	TT	T	1.992e^-7	4.409e^-4	INTRON toe
3L	13348579	3L_13348579_SNP [dm3] 3L_13355479_SNP [dm6]	C	A	1.992e^-7	4.409e^-4	UPSTREAM Nplp2 DOWNSTREAM CG17687 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	11988504	3R_11988504_SNP [dm3] 3R_16162782_SNP [dm6]	T	C	1.992e^-7	4.409e^-4	INTRON CG6006
3R	15700358	3R_15700358_SNP [dm3] 3R_19874636_SNP [dm6]	C	G	1.992e^-7	4.409e^-4	INTRON CG4562	TF binding site mE1_TFBS_Trl
2L	1717520	2L_1717520_SNP [dm3] 2L_1717520_SNP [dm6]	G	T	2.000e^-7	4.409e^-4	INTRON Rim2
2R	11509861	2R_11509861_SNP [dm3] 2R_15622356_SNP [dm6]	T	C	2.000e^-7	4.409e^-4	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11511812	2R_11511812_MNP [dm3] 2R_15624307_MNP [dm6]	ATCTTTTC	GAAAAGAT	2.000e^-7	4.409e^-4	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	15694596	3R_15694596_SNP [dm3] 3R_19868874_SNP [dm6]	C	A	2.000e^-7	4.409e^-4	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad
3R	7995363	3R_7995363_SNP [dm3] 3R_12169641_SNP [dm6]	C	T	2.000e^-7	4.409e^-4	INTERGENIC
3L	9095976	3L_9095976_DEL [dm3] 3L_9102876_DEL [dm6]	GAA	G	2.026e^-7	4.409e^-4	INTRON bol
X	10783297	X_10783297_DEL [dm3] X_10889264_DEL [dm6]	TT	T	2.026e^-7	4.409e^-4	INTRON Ork1
2L	3364393	2L_3364393_SNP [dm3] 2L_3364393_SNP [dm6]	G	A	2.034e^-7	4.409e^-4	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3367471	2L_3367471_SNP [dm3] 2L_3367471_SNP [dm6]	G	A	2.034e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3R	15689701	3R_15689701_SNP [dm3] 3R_19863979_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING CG4572 UPSTREAM CG4686	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	15692786	3R_15692786_SNP [dm3] 3R_19867064_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	UTR_3_PRIME CG4562 DOWNSTREAM CG4562 & 1 other
3R	15711751	3R_15711751_INS [dm3] 3R_19886029_INS [dm6]	G	GTG	2.195e^-7	4.409e^-4	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3R	15711759	3R_15711759_SNP [dm3] 3R_19886037_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	DOWNSTREAM ninaE & 1 other INTERGENIC
3R	15718216	3R_15718216_SNP [dm3] 3R_19892494_SNP [dm6]	G	C	2.195e^-7	4.409e^-4	INTRON CG4733
3R	15723742	3R_15723742_SNP [dm3] 3R_19898020_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
3R	15727996	3R_15727996_SNP [dm3] 3R_19902274_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON CG4538	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15734480	3R_15734480_DEL [dm3] 3R_19908758_DEL [dm6]	AATTAATTAAGAAATC...	A	2.195e^-7	4.409e^-4	DOWNSTREAM CR45047 & 1 other INTRON RhoGAP92B & 1 other
3R	15740789	3R_15740789_SNP [dm3] 3R_19915067_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	DOWNSTREAM RhoGAP92B & 1 other INTRON CG42508 & 1 other
3R	15751750	3R_15751750_DEL [dm3] 3R_19926028_DEL [dm6]	ATTTGG	A	2.195e^-7	4.409e^-4	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
3R	15759711	3R_15759711_SNP [dm3] 3R_19933989_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15772266	3R_15772266_SNP [dm3] 3R_19946544_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15781179	3R_15781179_SNP [dm3] 3R_19955457_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15782284	3R_15782284_SNP [dm3] 3R_19956562_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15783685	3R_15783685_SNP [dm3] 3R_19957963_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15787294	3R_15787294_INS [dm3] 3R_19961572_INS [dm6]	G	GA	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15789161	3R_15789161_SNP [dm3] 3R_19963439_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15795784	3R_15795784_SNP [dm3] 3R_19970062_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15797514	3R_15797514_SNP [dm3] 3R_19971792_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15809286	3R_15809286_SNP [dm3] 3R_19983564_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15812726	3R_15812726_SNP [dm3] 3R_19987004_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTRON Hs6st
3R	15814879	3R_15814879_SNP [dm3] 3R_19989157_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15829360	3R_15829360_SNP [dm3] 3R_20003638_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	INTRON Hs6st	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15831699	3R_15831699_SNP [dm3] 3R_20005977_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Hs6st	TF binding site mE1_TFBS_cad
3R	15834236	3R_15834236_SNP [dm3] 3R_20008514_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	UPSTREAM MED25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15834326	3R_15834326_SNP [dm3] 3R_20008604_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	UPSTREAM MED25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15843527	3R_15843527_SNP [dm3] 3R_20017805_SNP [dm6]	G	C	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING CG4836 UTR_3_PRIME CG4836 DOWNSTREAM CG4433	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15862056	3R_15862056_SNP [dm3] 3R_20036334_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	UPSTREAM CG10889 DOWNSTREAM CG17193 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15863672	3R_15863672_SNP [dm3] 3R_20037950_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	UTR_3_PRIME CG17193
3R	15863710	3R_15863710_SNP [dm3] 3R_20037988_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	UTR_3_PRIME CG17193
3R	15863711	3R_15863711_SNP [dm3] 3R_20037989_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	UTR_3_PRIME CG17193
3R	15883383	3R_15883383_SNP [dm3] 3R_20057661_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	15895162	3R_15895162_SNP [dm3] 3R_20069440_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	15907262	3R_15907262_SNP [dm3] 3R_20081540_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15932151	3R_15932151_SNP [dm3] 3R_20106429_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	DOWNSTREAM CG31206 INTERGENIC
3R	15981893	3R_15981893_SNP [dm3] 3R_20156171_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	16010879	3R_16010879_SNP [dm3] 3R_20185157_SNP [dm6]	T	G	2.195e^-7	4.409e^-4	INTERGENIC
3R	16010882	3R_16010882_SNP [dm3] 3R_20185160_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	INTERGENIC
3R	16040128	3R_16040128_SNP [dm3] 3R_20214406_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Nlg4
3R	16126137	3R_16126137_SNP [dm3] 3R_20300415_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	SPLICE_SITE_REGION cic INTRON cic
3R	16137808	3R_16137808_SNP [dm3] 3R_20312086_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	INTRON CG42668
3R	16140722	3R_16140722_SNP [dm3] 3R_20315000_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON CG42668
3R	16142379	3R_16142379_SNP [dm3] 3R_20316657_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTRON CG42668
3R	16153896	3R_16153896_SNP [dm3] 3R_20328174_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	UPSTREAM Sirt2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	16155115	3R_16155115_SNP [dm3] 3R_20329393_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING Sirt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16155822	3R_16155822_SNP [dm3] 3R_20330100_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	UTR_3_PRIME Sirt2 DOWNSTREAM Sirt2	TF binding site mE1_TFBS_cad
3R	16179453	3R_16179453_SNP [dm3] 3R_20353731_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	INTERGENIC
3R	16180598	3R_16180598_SNP [dm3] 3R_20354876_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	16181371	3R_16181371_SNP [dm3] 3R_20355649_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTERGENIC
3R	16187340	3R_16187340_SNP [dm3] 3R_20361618_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	DOWNSTREAM MtnC INTERGENIC
3R	16199488	3R_16199488_SNP [dm3] 3R_20373766_SNP [dm6]	T	G	2.195e^-7	4.409e^-4	INTERGENIC
3R	16200706	3R_16200706_SNP [dm3] 3R_20374984_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTERGENIC
3R	16200770	3R_16200770_SNP [dm3] 3R_20375048_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	16202180	3R_16202180_SNP [dm3] 3R_20376458_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTERGENIC
3R	16205964	3R_16205964_SNP [dm3] 3R_20380242_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	UTR_3_PRIME Gfrl
3R	16209305	3R_16209305_SNP [dm3] 3R_20383583_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16209457	3R_16209457_SNP [dm3] 3R_20383735_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16209868	3R_16209868_SNP [dm3] 3R_20384146_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16211093	3R_16211093_SNP [dm3] 3R_20385371_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16211329	3R_16211329_SNP [dm3] 3R_20385607_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16211336	3R_16211336_SNP [dm3] 3R_20385614_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16227630	3R_16227630_SNP [dm3] 3R_20401908_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16231854	3R_16231854_SNP [dm3] 3R_20406132_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	DOWNSTREAM CG4335 INTRON Gfrl
3R	16244585	3R_16244585_SNP [dm3] 3R_20418863_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16250820	3R_16250820_SNP [dm3] 3R_20425098_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16258263	3R_16258263_SNP [dm3] 3R_20432541_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16261585	3R_16261585_SNP [dm3] 3R_20435863_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON Gfrl	TF binding site mE1_TFBS_inv
3R	16261967	3R_16261967_SNP [dm3] 3R_20436245_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16262456	3R_16262456_SNP [dm3] 3R_20436734_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16268783	3R_16268783_DEL [dm3] 3R_20443061_DEL [dm6]	GC	G	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16272875	3R_16272875_SNP [dm3] 3R_20447153_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16298324	3R_16298324_SNP [dm3] 3R_20472602_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	INTRON Gfrl
3R	16382191	3R_16382191_SNP [dm3] 3R_20556469_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16392615	3R_16392615_SNP [dm3] 3R_20566893_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	INTRON CG5191
3R	16395737	3R_16395737_SNP [dm3] 3R_20570015_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON CG5191
3R	16399572	3R_16399572_SNP [dm3] 3R_20573850_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	DOWNSTREAM CG5191 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	16437829	3R_16437829_SNP [dm3] 3R_20612107_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	UTR_3_PRIME bon & 1 other DOWNSTREAM bon
3R	16438097	3R_16438097_SNP [dm3] 3R_20612375_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	UTR_3_PRIME bon & 1 other DOWNSTREAM bon
3R	16438437	3R_16438437_SNP [dm3] 3R_20612715_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	DOWNSTREAM bon INTRON CG15923
3R	16592979	3R_16592979_SNP [dm3] 3R_20767257_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON Syp	TF binding site mE1_TFBS_cad
3R	16644711	3R_16644711_SNP [dm3] 3R_20818989_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	UPSTREAM CG17270 DOWNSTREAM CG17271 INTERGENIC
3R	16989918	3R_16989918_SNP [dm3] 3R_21164196_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
3R	16994397	3R_16994397_SNP [dm3] 3R_21168675_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	16994519	3R_16994519_SNP [dm3] 3R_21168797_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	16994531	3R_16994531_SNP [dm3] 3R_21168809_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	17016654	3R_17016654_SNP [dm3] 3R_21190932_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18498754	3R_18498754_SNP [dm3] 3R_22673032_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18523212	3R_18523212_SNP [dm3] 3R_22697490_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18524043	3R_18524043_SNP [dm3] 3R_22698321_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18529628	3R_18529628_SNP [dm3] 3R_22703906_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	SPLICE_SITE_REGION CG6972 DOWNSTREAM CG13842 INTRON CG6972
3R	18543632	3R_18543632_DEL [dm3] 3R_22717910_DEL [dm6]	AA	G	2.195e^-7	4.409e^-4	INTRON wge	TF binding site mE1_TFBS_cad
3R	18545451	3R_18545451_SNP [dm3] 3R_22719729_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON wge	TF binding site mE1_TFBS_sens
3R	18545462	3R_18545462_SNP [dm3] 3R_22719740_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTRON wge	TF binding site mE1_TFBS_sens
3R	18545491	3R_18545491_SNP [dm3] 3R_22719769_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	INTRON wge	TF binding site mE1_TFBS_sens
3R	18546339	3R_18546339_SNP [dm3] 3R_22720617_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	UTR_5_PRIME wge DOWNSTREAM Irp-1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18546454	3R_18546454_SNP [dm3] 3R_22720732_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	UTR_5_PRIME wge DOWNSTREAM Irp-1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18547098	3R_18547098_DEL [dm3] 3R_22721376_DEL [dm6]	ATTAAAAGTCGC...	A	2.195e^-7	4.409e^-4	UTR_3_PRIME Irp-1A UPSTREAM wge	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18550527	3R_18550527_SNP [dm3] 3R_22724805_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	UPSTREAM Irp-1A DOWNSTREAM CG4813 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18563734	3R_18563734_SNP [dm3] 3R_22738012_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	18569871	3R_18569871_SNP [dm3] 3R_22744149_SNP [dm6]	T	G	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING vret	TF binding site mE1_TFBS_cad
3R	18569943	3R_18569943_SNP [dm3] 3R_22744221_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING vret	TF binding site mE1_TFBS_cad
3R	18570172	3R_18570172_SNP [dm3] 3R_22744450_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING vret	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18570390	3R_18570390_SNP [dm3] 3R_22744668_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING vret UPSTREAM HP1c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18571110	3R_18571110_SNP [dm3] 3R_22745388_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING vret UPSTREAM HP1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18576174	3R_18576174_SNP [dm3] 3R_22750452_SNP [dm6]	G	C	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING rumi UTR_5_PRIME rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18576192	3R_18576192_SNP [dm3] 3R_22750470_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING rumi UTR_5_PRIME rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18576221	3R_18576221_SNP [dm3] 3R_22750499_SNP [dm6]	A	C	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING rumi UTR_5_PRIME rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18576225	3R_18576225_SNP [dm3] 3R_22750503_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	NON_SYNONYMOUS_CODING rumi UTR_5_PRIME rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18576377	3R_18576377_SNP [dm3] 3R_22750655_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	UPSTREAM Usp12-46 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18576455	3R_18576455_SNP [dm3] 3R_22750733_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	UPSTREAM Usp12-46 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18576530	3R_18576530_SNP [dm3] 3R_22750808_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	UPSTREAM Usp12-46 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18576785	3R_18576785_SNP [dm3] 3R_22751063_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	UTR_5_PRIME Usp12-46 & 1 other UPSTREAM rumi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18578335	3R_18578335_SNP [dm3] 3R_22752613_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	18578892	3R_18578892_SNP [dm3] 3R_22753170_SNP [dm6]	T	G	2.195e^-7	4.409e^-4	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18645409	3R_18645409_SNP [dm3] 3R_22819687_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTERGENIC
3R	18651553	3R_18651553_SNP [dm3] 3R_22825831_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	EXON CR44350
3R	18683718	3R_18683718_SNP [dm3] 3R_22857996_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	18689635	3R_18689635_SNP [dm3] 3R_22863913_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTERGENIC
3R	18699641	3R_18699641_SNP [dm3] 3R_22873919_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18701448	3R_18701448_SNP [dm3] 3R_22875726_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	18702533	3R_18702533_SNP [dm3] 3R_22876811_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18761673	3R_18761673_SNP [dm3] 3R_22935951_SNP [dm6]	T	A	2.195e^-7	4.409e^-4	INTRON klg
3R	18770031	3R_18770031_SNP [dm3] 3R_22944309_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON klg
3R	18777611	3R_18777611_SNP [dm3] 3R_22951889_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24229088	3R_24229088_SNP [dm3] 3R_28403366_SNP [dm6]	A	T	2.195e^-7	4.409e^-4	INTERGENIC
3R	24485345	3R_24485345_SNP [dm3] 3R_28659623_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTERGENIC
3R	24497553	3R_24497553_SNP [dm3] 3R_28671831_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING CG9989	TF binding site mE1_TFBS_bab1
3R	24500348	3R_24500348_INS [dm3] 3R_28674626_INS [dm6]	C	TG	2.195e^-7	4.409e^-4	UPSTREAM CG9990 INTERGENIC
3R	24500422	3R_24500422_SNP [dm3] 3R_28674700_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	UPSTREAM CG9990 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24506237	3R_24506237_SNP [dm3] 3R_28680515_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON CG9990
3R	24506761	3R_24506761_SNP [dm3] 3R_28681039_SNP [dm6]	C	A	2.195e^-7	4.409e^-4	INTRON CG9990
3R	24557474	3R_24557474_SNP [dm3] 3R_28731752_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTRON htt
3R	24568609	3R_24568609_SNP [dm3] 3R_28742887_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON AstA-R2
3R	24570598	3R_24570598_SNP [dm3] 3R_28744876_SNP [dm6]	C	G	2.195e^-7	4.409e^-4	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24571365	3R_24571365_DEL [dm3] 3R_28745643_DEL [dm6]	ACTGCCGCTGCCAACGCAAT...	T	2.195e^-7	4.409e^-4	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24642576	3R_24642576_SNP [dm3] 3R_28816854_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	UTR_3_PRIME CG1646 DOWNSTREAM CG1523 INTRON CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24652489	3R_24652489_SNP [dm3] 3R_28826767_SNP [dm6]	G	C	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING WASp
3R	24653454	3R_24653454_DEL [dm3] 3R_28827732_DEL [dm6]	ATTGTTCTCTGTGTCTTTTG...	TAAATT	2.195e^-7	4.409e^-4	UPSTREAM WASp INTRON WASp
3R	24669376	3R_24669376_SNP [dm3] 3R_28843654_SNP [dm6]	G	T	2.195e^-7	4.409e^-4	INTRON Apc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24672236	3R_24672236_SNP [dm3] 3R_28846514_SNP [dm6]	T	C	2.195e^-7	4.409e^-4	INTRON spg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24673730	3R_24673730_SNP [dm3] 3R_28848008_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON spg
3R	24673826	3R_24673826_INS [dm3] 3R_28848104_INS [dm6]	G	GAATTTTAG	2.195e^-7	4.409e^-4	INTRON spg
3R	24673831	3R_24673831_INS [dm3] 3R_28848109_INS [dm6]	G	GAATT	2.195e^-7	4.409e^-4	INTRON spg
3R	24673834	3R_24673834_INS [dm3] 3R_28848112_INS [dm6]	A	AGAACCATC	2.195e^-7	4.409e^-4	INTRON spg
3R	24674007	3R_24674007_SNP [dm3] 3R_28848285_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON spg
3R	24674761	3R_24674761_SNP [dm3] 3R_28849039_SNP [dm6]	G	A	2.195e^-7	4.409e^-4	INTRON spg	TF binding site mE1_TFBS_HSA
3R	24702621	3R_24702621_SNP [dm3] 3R_28876899_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24729635	3R_24729635_SNP [dm3] 3R_28903913_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON Doa
3R	24761192	3R_24761192_SNP [dm3] 3R_28935470_SNP [dm6]	A	G	2.195e^-7	4.409e^-4	INTRON CG14521
3R	24761822	3R_24761822_SNP [dm3] 3R_28936100_SNP [dm6]	C	T	2.195e^-7	4.409e^-4	INTRON CG14521
3L	14201625	3L_14201625_SNP [dm3] 3L_14208525_SNP [dm6]	G	A	2.277e^-7	4.409e^-4	INTRON nuf	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1717538	2L_1717538_SNP [dm3] 2L_1717538_SNP [dm6]	G	A	2.318e^-7	4.409e^-4	INTRON Rim2
3R	7727796	3R_7727796_DEL [dm3] 3R_11902074_DEL [dm6]	TGATTTACAAA...	T	2.349e^-7	4.409e^-4	SPLICE_SITE_REGION Cad87A INTRON Cad87A
2L	11416267	2L_11416267_SNP [dm3] 2L_11416267_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	INTERGENIC
2L	14456452	2L_14456452_SNP [dm3] 2L_14456452_SNP [dm6]	C	G	2.362e^-7	4.409e^-4	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14825550	2L_14825550_SNP [dm3] 2L_14825550_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18486645	2L_18486645_SNP [dm3] 2L_18486645_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18486654	2L_18486654_SNP [dm3] 2L_18486654_SNP [dm6]	C	G	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18898609	2L_18898609_SNP [dm3] 2L_18898609_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	DOWNSTREAM CR44739 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18901519	2L_18901519_SNP [dm3] 2L_18901519_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTERGENIC
2L	20974397	2L_20974397_SNP [dm3] 2L_20974397_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTRON CG42238
2L	21650566	2L_21650566_DEL [dm3] 2L_21650566_DEL [dm6]	CTTTC	C	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	22082596	2L_22082596_SNP [dm3] 2L_22082596_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTERGENIC
2L	4587356	2L_4587356_SNP [dm3] 2L_4587356_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4587682	2L_4587682_SNP [dm3] 2L_4587682_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	INTRON dp
2L	6377868	2L_6377868_SNP [dm3] 2L_6377868_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	UTR_3_PRIME CG42368 DOWNSTREAM slam
2L	6378061	2L_6378061_SNP [dm3] 2L_6378061_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	UTR_3_PRIME CG42368 DOWNSTREAM slam
2L	6380261	2L_6380261_SNP [dm3] 2L_6380261_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	INTRON CG42368
2L	6380347	2L_6380347_SNP [dm3] 2L_6380347_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	UPSTREAM CG9507 INTRON CG42368
2L	6381501	2L_6381501_SNP [dm3] 2L_6381501_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	6381516	2L_6381516_SNP [dm3] 2L_6381516_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	6381543	2L_6381543_SNP [dm3] 2L_6381543_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	6381720	2L_6381720_SNP [dm3] 2L_6381720_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	6381981	2L_6381981_SNP [dm3] 2L_6381981_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	7320654	2L_7320654_SNP [dm3] 2L_7320654_SNP [dm6]	A	C	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9259410	2L_9259410_INS [dm3] 2L_9259410_INS [dm6]	G	GGG	2.362e^-7	4.409e^-4	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	10287784	2R_10287784_SNP [dm3] 2R_14400279_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	INTERGENIC
2R	10287787	2R_10287787_SNP [dm3] 2R_14400282_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTERGENIC
2R	10495520	2R_10495520_SNP [dm3] 2R_14608015_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10496385	2R_10496385_SNP [dm3] 2R_14608880_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10496624	2R_10496624_SNP [dm3] 2R_14609119_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10496683	2R_10496683_SNP [dm3] 2R_14609178_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10496684	2R_10496684_SNP [dm3] 2R_14609179_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10496912	2R_10496912_SNP [dm3] 2R_14609407_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10971151	2R_10971151_SNP [dm3] 2R_15083646_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTERGENIC
2R	12027290	2R_12027290_SNP [dm3] 2R_16139785_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON Got1
2R	12027396	2R_12027396_SNP [dm3] 2R_16139891_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	INTRON Got1
2R	12242873	2R_12242873_SNP [dm3] 2R_16355368_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	UPSTREAM CG30098 INTERGENIC
2R	12279577	2R_12279577_DEL [dm3] 2R_16392072_DEL [dm6]	AA	A	2.362e^-7	4.409e^-4	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14768699	2R_14768699_SNP [dm3] 2R_18881194_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTRON sano
2R	14769574	2R_14769574_SNP [dm3] 2R_18882069_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTRON sano
2R	14892631	2R_14892631_SNP [dm3] 2R_19005126_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	INTRON tn
2R	16419930	2R_16419930_SNP [dm3] 2R_20532425_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	UPSTREAM CG30154 EXON CR44651
2R	16419938	2R_16419938_SNP [dm3] 2R_20532433_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	UPSTREAM CG30154 EXON CR44651
2R	16423159	2R_16423159_DEL [dm3] 2R_20535654_DEL [dm6]	TAGGT	T	2.362e^-7	4.409e^-4	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2R	16602705	2R_16602705_SNP [dm3] 2R_20715200_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTRON dpr
2R	16603107	2R_16603107_SNP [dm3] 2R_20715602_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON dpr
2R	16612502	2R_16612502_SNP [dm3] 2R_20724997_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON dpr
2R	16612521	2R_16612521_SNP [dm3] 2R_20725016_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTRON dpr
2R	16666260	2R_16666260_SNP [dm3] 2R_20778755_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG43711	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16800024	2R_16800024_SNP [dm3] 2R_20912519_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16800026	2R_16800026_SNP [dm3] 2R_20912521_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17161462	2R_17161462_SNP [dm3] 2R_21273957_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON Rgk3
2R	17162234	2R_17162234_SNP [dm3] 2R_21274729_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON Rgk3
2R	17162267	2R_17162267_SNP [dm3] 2R_21274762_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON Rgk3
2R	17168816	2R_17168816_SNP [dm3] 2R_21281311_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG34203 UPSTREAM MFS16 DOWNSTREAM Rgk3
2R	17169744	2R_17169744_SNP [dm3] 2R_21282239_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM MFS16 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	17246094	2R_17246094_SNP [dm3] 2R_21358589_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17249436	2R_17249436_SNP [dm3] 2R_21361931_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19158032	2R_19158032_SNP [dm3] 2R_23270509_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	START_LOST CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
2R	19326051	2R_19326051_MNP [dm3] 2R_23438528_MNP [dm6]	GAA	AGC	2.362e^-7	4.409e^-4	INTERGENIC
2R	19326071	2R_19326071_SNP [dm3] 2R_23438548_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTERGENIC
2R	19326075	2R_19326075_SNP [dm3] 2R_23438552_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	INTERGENIC
2R	19326078	2R_19326078_INS [dm3] 2R_23438555_INS [dm6]	T	TTGTTACACGTACTCC...	2.362e^-7	4.409e^-4	INTERGENIC
2R	19844463	2R_19844463_SNP [dm3] 2R_23956940_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG16787 UPSTREAM alpha-catenin-related DOWNSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19851249	2R_19851249_SNP [dm3] 2R_23963726_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTRON Fmo-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19851250	2R_19851250_SNP [dm3] 2R_23963727_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTRON Fmo-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19851407	2R_19851407_SNP [dm3] 2R_23963884_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19851464	2R_19851464_SNP [dm3] 2R_23963941_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19851729	2R_19851729_SNP [dm3] 2R_23964206_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3258514	2R_3258514_SNP [dm3] 2R_7371009_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	3266622	2R_3266622_SNP [dm3] 2R_7379117_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3266706	2R_3266706_SNP [dm3] 2R_7379201_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3295458	2R_3295458_SNP [dm3] 2R_7407953_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	UPSTREAM Eaf DOWNSTREAM CG1701 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3302691	2R_3302691_DEL [dm3] 2R_7415186_DEL [dm6]	AA	A	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	3303291	2R_3303291_SNP [dm3] 2R_7415786_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	3920309	2R_3920309_SNP [dm3] 2R_8032804_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTRON Optix	TF binding site mE1_TFBS_sens
2R	4824510	2R_4824510_SNP [dm3] 2R_8937005_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING FANCI	TF binding site mE1_TFBS_sens
2R	4841482	2R_4841482_SNP [dm3] 2R_8953977_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTRON babo
2R	678603	2R_678603_SNP [dm3] 2R_4791098_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	INTERGENIC	transposable element FlyBase
2R	8013860	2R_8013860_SNP [dm3] 2R_12126355_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8028279	2R_8028279_SNP [dm3] 2R_12140774_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	START_GAINED CG8378 UTR_5_PRIME CG8378 UPSTREAM skpB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	8066069	2R_8066069_SNP [dm3] 2R_12178564_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066079	2R_8066079_SNP [dm3] 2R_12178574_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066278	2R_8066278_SNP [dm3] 2R_12178773_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066409	2R_8066409_SNP [dm3] 2R_12178904_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066488	2R_8066488_SNP [dm3] 2R_12178983_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066505	2R_8066505_SNP [dm3] 2R_12179000_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066514	2R_8066514_SNP [dm3] 2R_12179009_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	UPSTREAM CR45264 & 1 other DOWNSTREAM CG8860 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066757	2R_8066757_SNP [dm3] 2R_12179252_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	8066832	2R_8066832_SNP [dm3] 2R_12179327_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	8066843	2R_8066843_SNP [dm3] 2R_12179338_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	8066847	2R_8066847_SNP [dm3] 2R_12179342_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	8066901	2R_8066901_SNP [dm3] 2R_12179396_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8066906	2R_8066906_SNP [dm3] 2R_12179401_SNP [dm6]	A	C	2.362e^-7	4.409e^-4	UPSTREAM EndoG DOWNSTREAM CG8860 EXON CR45264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8492785	2R_8492785_SNP [dm3] 2R_12605280_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	INTRON Amph
2R	8560173	2R_8560173_SNP [dm3] 2R_12672668_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9148445	2R_9148445_SNP [dm3] 2R_13260940_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON CG42319
2R	9148530	2R_9148530_SNP [dm3] 2R_13261025_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON CG42319
2R	9148876	2R_9148876_SNP [dm3] 2R_13261371_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON CG42319
2R	9148978	2R_9148978_SNP [dm3] 2R_13261473_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON CG42319
2R	9790304	2R_9790304_SNP [dm3] 2R_13902799_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3L	10261925	3L_10261925_SNP [dm3] 3L_10268825_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	10277661	3L_10277661_SNP [dm3] 3L_10284561_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	10931106	3L_10931106_SNP [dm3] 3L_10938006_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	INTERGENIC
3L	11387454	3L_11387454_SNP [dm3] 3L_11394354_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	UPSTREAM CG11726 INTERGENIC
3L	12164204	3L_12164204_SNP [dm3] 3L_12171104_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	INTRON Rh7
3L	12440333	3L_12440333_SNP [dm3] 3L_12447233_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13823667	3L_13823667_SNP [dm3] 3L_13830567_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTERGENIC
3L	15766279	3L_15766279_SNP [dm3] 3L_15773179_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16933208	3L_16933208_SNP [dm3] 3L_16940108_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Cpr73D	TF binding site mE1_TFBS_chinmo
3L	18910093	3L_18910093_SNP [dm3] 3L_18916993_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	UPSTREAM CG6839 INTERGENIC
3L	18910263	3L_18910263_SNP [dm3] 3L_18917163_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	UPSTREAM CG6839 INTERGENIC
3L	19664686	3L_19664686_SNP [dm3] 3L_19671586_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	INTERGENIC
3L	2282140	3L_2282140_SNP [dm3] 3L_2282140_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	3926149	3L_3926149_DEL [dm3] 3L_3926149_DEL [dm6]	ACTAA	A	2.362e^-7	4.409e^-4	UPSTREAM Eip63F-1 INTRON Eip63F-1
3L	4089486	3L_4089486_DEL [dm3] 3L_4089486_DEL [dm6]	CTGA	C	2.362e^-7	4.409e^-4	UPSTREAM Gad1 INTRON CG14989
3L	4688834	3L_4688834_SNP [dm3] 3L_4688834_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	UPSTREAM CG7514 DOWNSTREAM CG18418 INTERGENIC
3L	4689033	3L_4689033_SNP [dm3] 3L_4689033_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	UTR_3_PRIME CG18418 UPSTREAM CG7514
3L	4689040	3L_4689040_SNP [dm3] 3L_4689040_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	UTR_3_PRIME CG18418 UPSTREAM CG7514
3L	4689047	3L_4689047_SNP [dm3] 3L_4689047_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	UTR_3_PRIME CG18418 UPSTREAM CG7514
3L	4689083	3L_4689083_SNP [dm3] 3L_4689083_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
3L	4897159	3L_4897159_DEL [dm3] 3L_4897159_DEL [dm6]	GCCGCCTGAAGT...	G	2.362e^-7	4.409e^-4	FRAME_SHIFT CG13705
3L	4897173	3L_4897173_INS [dm3] 3L_4897173_INS [dm6]	C	CAC	2.362e^-7	4.409e^-4	FRAME_SHIFT CG13705
3L	6483289	3L_6483289_SNP [dm3] 3L_6490189_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON CG8270
3L	6483290	3L_6483290_SNP [dm3] 3L_6490190_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON CG8270
3L	6483301	3L_6483301_SNP [dm3] 3L_6490201_SNP [dm6]	C	A	2.362e^-7	4.409e^-4	INTRON CG8270
3L	6483348	3L_6483348_SNP [dm3] 3L_6490248_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
3L	6483417	3L_6483417_SNP [dm3] 3L_6490317_SNP [dm6]	A	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
3L	7747224	3L_7747224_SNP [dm3] 3L_7754124_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM CG7409 INTRON CG32373
3L	7747275	3L_7747275_SNP [dm3] 3L_7754175_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	UPSTREAM CG7409 INTRON CG32373
3L	7747331	3L_7747331_SNP [dm3] 3L_7754231_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	UPSTREAM CG7409 INTRON CG32373
3L	7748391	3L_7748391_SNP [dm3] 3L_7755291_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	DOWNSTREAM CG7409 INTRON CG32373
3L	7748512	3L_7748512_SNP [dm3] 3L_7755412_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	DOWNSTREAM CG7409 INTRON CG32373
3L	7748905	3L_7748905_SNP [dm3] 3L_7755805_SNP [dm6]	G	C	2.362e^-7	4.409e^-4	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3L	7858614	3L_7858614_SNP [dm3] 3L_7865514_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTRON Pdp1
3L	7862192	3L_7862192_SNP [dm3] 3L_7869092_SNP [dm6]	C	G	2.362e^-7	4.409e^-4	UTR_5_PRIME CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8134194	3L_8134194_SNP [dm3] 3L_8141094_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	NON_SYNONYMOUS_CODING mus301 DOWNSTREAM CG13676	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9051483	3L_9051483_SNP [dm3] 3L_9058383_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_Trl
3R	11771598	3R_11771598_SNP [dm3] 3R_15945876_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	INTRON Sap47
3R	11968755	3R_11968755_SNP [dm3] 3R_16143033_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING Sb
3R	24710542	3R_24710542_SNP [dm3] 3R_28884820_SNP [dm6]	T	G	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24710587	3R_24710587_SNP [dm3] 3R_28884865_SNP [dm6]	A	G	2.362e^-7	4.409e^-4	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	8733219	3R_8733219_SNP [dm3] 3R_12907497_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTERGENIC
3R	8758307	3R_8758307_SNP [dm3] 3R_12932585_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON beat-Vb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8884745	3R_8884745_SNP [dm3] 3R_13059023_SNP [dm6]	G	T	2.362e^-7	4.409e^-4	INTRON sim	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	9305412	3R_9305412_SNP [dm3] 3R_13479690_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	DOWNSTREAM CR45589 INTERGENIC
X	15305554	X_15305554_SNP [dm3] X_15411521_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON Cngl
X	15420943	X_15420943_SNP [dm3] X_15526910_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTRON Ac13E
X	16176711	X_16176711_SNP [dm3] X_16282678_SNP [dm6]	T	A	2.362e^-7	4.409e^-4	INTRON eas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16431534	X_16431534_SNP [dm3] X_16537501_SNP [dm6]	T	C	2.362e^-7	4.409e^-4	INTERGENIC
X	19712959	X_19712959_SNP [dm3] X_19818926_SNP [dm6]	C	T	2.362e^-7	4.409e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3288047	X_3288047_SNP [dm3] X_3394014_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3930121	X_3930121_DEL [dm3] X_4036088_DEL [dm6]	TTT	T	2.362e^-7	4.409e^-4	INTERGENIC
X	8825049	X_8825049_SNP [dm3] X_8931016_SNP [dm6]	G	A	2.362e^-7	4.409e^-4	INTRON rdgA
X	9641436	X_9641436_SNP [dm3] X_9747403_SNP [dm6]	A	C	2.362e^-7	4.409e^-4	INTRON Sp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4839102	3L_4839102_SNP [dm3] 3L_4839102_SNP [dm6]	T	C	2.671e^-7	4.982e^-4	UTR_5_PRIME CG13707 INTRON CG13707
2L	4345978	2L_4345978_SNP [dm3] 2L_4345978_SNP [dm6]	C	T	2.684e^-7	5.000e^-4	DOWNSTREAM Atet INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4089144	2L_4089144_SNP [dm3] 2L_4089144_SNP [dm6]	G	A	2.715e^-7	5.047e^-4	INTRON ed
2L	9474638	2L_9474638_SNP [dm3] 2L_9474638_SNP [dm6]	G	A	2.715e^-7	5.047e^-4	INTERGENIC
2L	921657	2L_921657_SNP [dm3] 2L_921657_SNP [dm6]	A	G	2.736e^-7	5.081e^-4	INTERGENIC
2L	21954427	2L_21954427_SNP [dm3] 2L_21954427_SNP [dm6]	C	T	2.960e^-7	5.476e^-4	INTERGENIC
2R	15415030	2R_15415030_SNP [dm3] 2R_19527525_SNP [dm6]	C	A	2.960e^-7	5.476e^-4	UTR_3_PRIME sm
3L	5129334	3L_5129334_SNP [dm3] 3L_5136234_SNP [dm6]	T	A	2.960e^-7	5.476e^-4	UTR_5_PRIME CG10674 UPSTREAM CG4611 DOWNSTREAM CG4603 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7931173	3L_7931173_DEL [dm3] 3L_7938073_DEL [dm6]	CTGGTCATTC	C	2.960e^-7	5.476e^-4	DOWNSTREAM Srp9 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12150405	2R_12150405_SNP [dm3] 2R_16262900_SNP [dm6]	G	A	2.996e^-7	5.497e^-4	SYNONYMOUS_CODING fidipidine
2R	19204158	2R_19204158_SNP [dm3] 2R_23316635_SNP [dm6]	C	T	2.996e^-7	5.497e^-4	INTERGENIC
2R	21127834	2R_21127834_SNP [dm3] 2R_25240311_SNP [dm6]	A	T	2.996e^-7	5.497e^-4	INTRON CG9380
3L	7933032	3L_7933032_SNP [dm3] 3L_7939932_SNP [dm6]	G	T	2.996e^-7	5.497e^-4	INTERGENIC
3R	18512458	3R_18512458_SNP [dm3] 3R_22686736_SNP [dm6]	G	T	2.996e^-7	5.497e^-4	UPSTREAM CG17625 & 1 other DOWNSTREAM wfs1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	8820945	3R_8820945_SNP [dm3] 3R_12995223_SNP [dm6]	A	C	2.996e^-7	5.497e^-4	UPSTREAM CG7488 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	9642907	3R_9642907_DEL [dm3] 3R_13817185_DEL [dm6]	TTATA	T	2.996e^-7	5.497e^-4	DOWNSTREAM CR43642 INTERGENIC
X	15525376	X_15525376_DEL [dm3] X_15631343_DEL [dm6]	AAA	A	2.996e^-7	5.497e^-4	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16842069	2R_16842069_SNP [dm3] 2R_20954564_SNP [dm6]	A	T	3.008e^-7	5.508e^-4	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13002608	3L_13002608_SNP [dm3] 3L_13009508_SNP [dm6]	A	C	3.008e^-7	5.508e^-4	NON_SYNONYMOUS_CODING CG11261 DOWNSTREAM CG14117
2L	10696279	2L_10696279_SNP [dm3] 2L_10696279_SNP [dm6]	A	C	3.037e^-7	5.525e^-4	SYNONYMOUS_CODING CG7300 EXON CR44181
2L	4130039	2L_4130039_SNP [dm3] 2L_4130039_SNP [dm6]	A	G	3.037e^-7	5.525e^-4	INTERGENIC
2L	7327873	2L_7327873_SNP [dm3] 2L_7327873_SNP [dm6]	A	G	3.037e^-7	5.525e^-4	INTERGENIC
2L	9639556	2L_9639556_SNP [dm3] 2L_9639556_SNP [dm6]	T	A	3.037e^-7	5.525e^-4	INTRON Apoltp
3R	5180932	3R_5180932_SNP [dm3] 3R_9355210_SNP [dm6]	A	T	3.037e^-7	5.525e^-4	UPSTREAM snoRNA:Me18S-G1358b & 2 others DOWNSTREAM snoRNA:Me18S-G1358a INTRON CG45050
2L	15123463	2L_15123463_SNP [dm3] 2L_15123463_SNP [dm6]	C	T	3.045e^-7	5.525e^-4	INTERGENIC
2L	4185413	2L_4185413_SNP [dm3] 2L_4185413_SNP [dm6]	T	A	3.045e^-7	5.525e^-4	DOWNSTREAM CG31961 EXON CR44057
2L	8420901	2L_8420901_SNP [dm3] 2L_8420901_SNP [dm6]	T	C	3.045e^-7	5.525e^-4	INTRON Akap200	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

pc_MB_Alpha_Abnormal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results