DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.930e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3093 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25052715	3R_25052715_SNP [dm3] 3R_29226993_SNP [dm6]	C	T	4.004e^-8	0.074	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10432228	2L_10432228_SNP [dm3] 2L_10432228_SNP [dm6]	A	G	2.755e^-7	0.111	DOWNSTREAM CG5337 INTRON TfIIB	TF binding site mE1_TFBS_sens
X	19001007	X_19001007_INS [dm3] X_19106974_INS [dm6]	C	CCATTTA	2.939e^-7	0.111	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5974460	2R_5974460_SNP [dm3] 2R_10086955_SNP [dm6]	A	G	4.489e^-7	0.111	SYNONYMOUS_CODING sut4 UPSTREAM CG2269 INTRON CG2269
3R	25052675	3R_25052675_SNP [dm3] 3R_29226953_SNP [dm6]	G	A	4.489e^-7	0.111	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25052708	3R_25052708_INS [dm3] 3R_29226986_INS [dm6]	G	GTAGTTCTCGAG...	4.489e^-7	0.111	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14295019	3R_14295019_SNP [dm3] 3R_18469297_SNP [dm6]	C	G	4.596e^-7	0.111	INTRON fru
2L	10432123	2L_10432123_SNP [dm3] 2L_10432123_SNP [dm6]	A	C	5.027e^-7	0.111	SYNONYMOUS_CODING TfIIB DOWNSTREAM CG5337	TF binding site mE1_TFBS_sens
3R	14295058	3R_14295058_SNP [dm3] 3R_18469336_SNP [dm6]	G	A	5.402e^-7	0.111	INTRON fru
2L	13948339	2L_13948339_SNP [dm3] 2L_13948339_SNP [dm6]	G	C	6.143e^-7	0.111	UPSTREAM CG16884 INTRON Ance-3
2L	1243076	2L_1243076_SNP [dm3] 2L_1243076_SNP [dm6]	G	A	6.808e^-7	0.111	DOWNSTREAM CG5397 INTERGENIC
3R	22306257	3R_22306257_SNP [dm3] 3R_26480535_SNP [dm6]	T	C	7.236e^-7	0.111	INTRON plum
2R	12031180	2R_12031180_SNP [dm3] 2R_16143675_SNP [dm6]	G	A	1.282e^-6	0.182	NON_SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24485992	3R_24485992_SNP [dm3] 3R_28660270_SNP [dm6]	G	T	1.528e^-6	0.195	INTERGENIC
3L	9337796	3L_9337796_SNP [dm3] 3L_9344696_SNP [dm6]	C	T	1.585e^-6	0.195	INTRON PGRP-LC
3R	22248763	3R_22248763_SNP [dm3] 3R_26423041_SNP [dm6]	C	T	1.696e^-6	0.196	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11064771	2R_11064771_SNP [dm3] 2R_15177266_SNP [dm6]	T	C	1.982e^-6	0.215	INTRON igl
2R	17873569	2R_17873569_SNP [dm3] 2R_21986064_SNP [dm6]	G	A	2.826e^-6	0.285	SYNONYMOUS_CODING CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25052694	3R_25052694_SNP [dm3] 3R_29226972_SNP [dm6]	C	T	2.932e^-6	0.285	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17120344	2R_17120344_SNP [dm3] 2R_21232839_SNP [dm6]	T	C	3.903e^-6	0.288	INTRON ASPP
3R	12114233	3R_12114233_SNP [dm3] 3R_16288511_SNP [dm6]	C	T	4.197e^-6	0.288	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
3R	23449489	3R_23449489_SNP [dm3] 3R_27623767_SNP [dm6]	A	G	4.328e^-6	0.288	SYNONYMOUS_CODING CG5612 INTRON Tusp
3L	5357783	3L_5357783_SNP [dm3] 3L_5364683_SNP [dm6]	A	T	4.603e^-6	0.288	INTRON Uev1A	TF binding site mE1_TFBS_inv
X	14801187	X_14801187_SNP [dm3] X_14907154_SNP [dm6]	C	A	5.247e^-6	0.288	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
2L	9581440	2L_9581440_SNP [dm3] 2L_9581440_SNP [dm6]	A	G	5.293e^-6	0.288	SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8784041	3R_8784041_SNP [dm3] 3R_12958319_SNP [dm6]	G	T	5.481e^-6	0.288	INTRON grsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	2689211	3R_2689211_SNP [dm3] 3R_6863489_SNP [dm6]	A	T	5.871e^-6	0.288	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	10829665	X_10829665_SNP [dm3] X_10935632_SNP [dm6]	C	T	6.135e^-6	0.288	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8389705	2L_8389705_SNP [dm3] 2L_8389705_SNP [dm6]	A	G	6.440e^-6	0.288	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	12406591	2L_12406591_SNP [dm3] 2L_12406591_SNP [dm6]	G	A	6.450e^-6	0.288	DOWNSTREAM vir-1 INTRON vir-1
2L	12213802	2L_12213802_SNP [dm3] 2L_12213802_SNP [dm6]	T	C	6.458e^-6	0.288	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3692349	3L_3692349_SNP [dm3] 3L_3692349_SNP [dm6]	C	G	6.917e^-6	0.288	INTERGENIC
2L	13947108	2L_13947108_SNP [dm3] 2L_13947108_SNP [dm6]	T	A	7.085e^-6	0.288	UTR_5_PRIME CG16884 INTRON Ance-3
2L	13947278	2L_13947278_SNP [dm3] 2L_13947278_SNP [dm6]	G	T	7.085e^-6	0.288	INTRON Ance-3 & 1 other
2L	13947307	2L_13947307_SNP [dm3] 2L_13947307_SNP [dm6]	A	G	7.085e^-6	0.288	INTRON Ance-3 & 1 other
2L	13947316	2L_13947316_SNP [dm3] 2L_13947316_SNP [dm6]	C	T	7.085e^-6	0.288	INTRON Ance-3 & 1 other
2L	13947331	2L_13947331_SNP [dm3] 2L_13947331_SNP [dm6]	C	A	7.085e^-6	0.288	INTRON Ance-3 & 1 other
3R	19163087	3R_19163087_SNP [dm3] 3R_23337365_SNP [dm6]	T	C	7.323e^-6	0.288	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4884999	2L_4884999_SNP [dm3] 2L_4884999_SNP [dm6]	G	A	7.916e^-6	0.288	SYNONYMOUS_CODING CG3008	TF binding site mE1_TFBS_sens
2L	14111845	2L_14111845_SNP [dm3] 2L_14111845_SNP [dm6]	T	A	8.161e^-6	0.288	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19673290	3R_19673290_SNP [dm3] 3R_23847568_SNP [dm6]	C	A	8.181e^-6	0.288	INTRON CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10894813	X_10894813_INS [dm3] X_11000780_INS [dm6]	T	TCCCTTTT	8.318e^-6	0.288	INTRON CG42339
X	9247617	X_9247617_SNP [dm3] X_9353584_SNP [dm6]	C	A	8.450e^-6	0.288	INTRON CG34449
3L	462588	3L_462588_DEL [dm3] 3L_462588_DEL [dm6]	AA	A	8.544e^-6	0.288	INTRON klar
3R	25844163	3R_25844163_SNP [dm3] 3R_30018441_SNP [dm6]	T	A	8.773e^-6	0.288	INTRON Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3692530	3L_3692530_SNP [dm3] 3L_3692530_SNP [dm6]	A	C	9.076e^-6	0.288	INTERGENIC
3L	11120691	3L_11120691_SNP [dm3] 3L_11127591_SNP [dm6]	G	T	9.493e^-6	0.288	INTRON CG42575
3L	9339460	3L_9339460_SNP [dm3] 3L_9346360_SNP [dm6]	C	T	9.501e^-6	0.288	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	11067108	2R_11067108_SNP [dm3] 2R_15179603_SNP [dm6]	A	C	9.846e^-6	0.288	INTRON igl
3L	1591252	3L_1591252_SNP [dm3] 3L_1591252_SNP [dm6]	G	A	1.018e^-5	0.288	INTRON CG13917
3R	24871998	3R_24871998_SNP [dm3] 3R_29046276_SNP [dm6]	C	G	1.040e^-5	0.288	UTR_3_PRIME Pkc98E
3L	3692291	3L_3692291_SNP [dm3] 3L_3692291_SNP [dm6]	T	C	1.063e^-5	0.288	INTERGENIC
2R	1719588	2R_1719588_SNP [dm3] 2R_5832083_SNP [dm6]	G	A	1.096e^-5	0.288	INTRON dpr12
3R	6259016	3R_6259016_SNP [dm3] 3R_10433294_SNP [dm6]	G	C	1.104e^-5	0.288	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10218405	3L_10218405_SNP [dm3] 3L_10225305_SNP [dm6]	A	C	1.222e^-5	0.288	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20436932	3R_20436932_SNP [dm3] 3R_24611210_SNP [dm6]	A	C	1.270e^-5	0.288	INTRON mld
3R	25845695	3R_25845695_SNP [dm3] 3R_30019973_SNP [dm6]	C	G	1.311e^-5	0.288	INTRON Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10418764	2L_10418764_DEL [dm3] 2L_10418764_DEL [dm6]	AAGAACAAAGTTCTTCA...	A	1.337e^-5	0.288	UTR_3_PRIME Klp31E UPSTREAM RfC3	TF binding site BDTNP1_TFBS_Med
2L	10432979	2L_10432979_SNP [dm3] 2L_10432979_SNP [dm6]	T	A	1.362e^-5	0.288	UTR_3_PRIME TfIIB & 1 other DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
3R	23640170	3R_23640170_SNP [dm3] 3R_27814448_SNP [dm6]	C	A	1.371e^-5	0.288	INTRON CG34353
3L	13316069	3L_13316069_SNP [dm3] 3L_13322969_SNP [dm6]	C	A	1.374e^-5	0.288	INTERGENIC
3L	2852133	3L_2852133_SNP [dm3] 3L_2852133_SNP [dm6]	G	A	1.445e^-5	0.288	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24485568	3R_24485568_INS [dm3] 3R_28659846_INS [dm6]	C	CAGG	1.475e^-5	0.288	INTERGENIC
3L	8890464	3L_8890464_SNP [dm3] 3L_8897364_SNP [dm6]	A	G	1.506e^-5	0.288	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12114289	3R_12114289_SNP [dm3] 3R_16288567_SNP [dm6]	C	A	1.520e^-5	0.288	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
3R	12114921	3R_12114921_SNP [dm3] 3R_16289199_SNP [dm6]	C	A	1.520e^-5	0.288	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25846749	3R_25846749_DEL [dm3] 3R_30021027_DEL [dm6]	TGACCCGGTCCCTTTATTAA...	T	1.527e^-5	0.288	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25246460	3R_25246460_SNP [dm3] 3R_29420738_SNP [dm6]	C	T	1.547e^-5	0.288	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11033732	X_11033732_SNP [dm3] X_11139699_SNP [dm6]	A	T	1.570e^-5	0.288	DOWNSTREAM CG32667 & 2 others EXON CR44054	TF binding site BDTNP1_TFBS_sna
2L	19263670	2L_19263670_SNP [dm3] 2L_19263670_SNP [dm6]	T	C	1.648e^-5	0.288	DOWNSTREAM CR44191 INTERGENIC
3R	7743523	3R_7743523_SNP [dm3] 3R_11917801_SNP [dm6]	G	A	1.648e^-5	0.288	INTRON Cad87A
3R	16486476	3R_16486476_INS [dm3] 3R_20660754_INS [dm6]	T	TT	1.705e^-5	0.288	UPSTREAM Nep4 INTERGENIC
2L	13946966	2L_13946966_SNP [dm3] 2L_13946966_SNP [dm6]	G	A	1.709e^-5	0.288	INTRON Ance-3 & 1 other
2L	19203907	2L_19203907_SNP [dm3] 2L_19203907_SNP [dm6]	A	T	1.714e^-5	0.288	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4287319	2L_4287319_SNP [dm3] 2L_4287319_SNP [dm6]	A	T	1.729e^-5	0.288	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8911665	2L_8911665_SNP [dm3] 2L_8911665_SNP [dm6]	G	A	1.747e^-5	0.288	INTRON CG34398	TF binding site mE1_TFBS_HSA
3R	12113150	3R_12113150_SNP [dm3] 3R_16287428_SNP [dm6]	C	A	1.767e^-5	0.288	INTRON gish
3R	12114335	3R_12114335_SNP [dm3] 3R_16288613_SNP [dm6]	G	C	1.767e^-5	0.288	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
3R	20870160	3R_20870160_SNP [dm3] 3R_25044438_SNP [dm6]	A	T	1.851e^-5	0.288	INTRON 5PtaseI	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14598608	3L_14598608_SNP [dm3] 3L_14605508_SNP [dm6]	T	G	1.922e^-5	0.288	INTERGENIC
2L	19651301	2L_19651301_SNP [dm3] 2L_19651301_SNP [dm6]	C	T	1.931e^-5	0.288	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18675282	2R_18675282_SNP [dm3] 2R_22787777_SNP [dm6]	A	G	1.937e^-5	0.288	INTRON CG42260
3R	24866068	3R_24866068_DEL [dm3] 3R_29040346_DEL [dm6]	CAATTAGAAAACGCG...	T	1.961e^-5	0.288	INTRON Pkc98E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24866540	3R_24866540_DEL [dm3] 3R_29040818_DEL [dm6]	ATAGTTAA	A	1.961e^-5	0.288	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	25807382	3R_25807382_SNP [dm3] 3R_29981660_SNP [dm6]	A	C	1.961e^-5	0.288	INTERGENIC
3R	25807414	3R_25807414_SNP [dm3] 3R_29981692_SNP [dm6]	A	G	1.961e^-5	0.288	INTERGENIC
2L	7631218	2L_7631218_SNP [dm3] 2L_7631218_SNP [dm6]	A	G	1.990e^-5	0.288	INTERGENIC
3R	20792648	3R_20792648_SNP [dm3] 3R_24966926_SNP [dm6]	T	G	2.013e^-5	0.288	INTERGENIC
X	19436957	X_19436957_SNP [dm3] X_19542924_SNP [dm6]	T	C	2.021e^-5	0.288	INTRON CG32532	TF binding site BDTNP1_TFBS_da
2R	11645713	2R_11645713_SNP [dm3] 2R_15758208_SNP [dm6]	T	A	2.025e^-5	0.288	INTRON CG30089	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	11085334	3L_11085334_SNP [dm3] 3L_11092234_SNP [dm6]	C	A	2.060e^-5	0.288	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11086016	3L_11086016_SNP [dm3] 3L_11092916_SNP [dm6]	A	G	2.060e^-5	0.288	UTR_5_PRIME JIL-1 DOWNSTREAM CG6279	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9733839	3R_9733839_SNP [dm3] 3R_13908117_SNP [dm6]	G	A	2.060e^-5	0.288	INTERGENIC
2L	11972194	2L_11972194_SNP [dm3] 2L_11972194_SNP [dm6]	T	A	2.081e^-5	0.288	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	4893792	3R_4893792_SNP [dm3] 3R_9068070_SNP [dm6]	C	T	2.119e^-5	0.288	UTR_3_PRIME pum
2L	9581479	2L_9581479_SNP [dm3] 2L_9581479_SNP [dm6]	A	G	2.175e^-5	0.288	SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.181e^-5	0.288	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1121475	3L_1121475_SNP [dm3] 3L_1121475_SNP [dm6]	A	C	2.194e^-5	0.288	INTERGENIC
2L	19265570	2L_19265570_SNP [dm3] 2L_19265570_SNP [dm6]	C	T	2.211e^-5	0.288	INTERGENIC
3L	9146426	3L_9146426_SNP [dm3] 3L_9153326_SNP [dm6]	T	C	2.236e^-5	0.288	INTRON Rdl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17120405	2R_17120405_SNP [dm3] 2R_21232900_SNP [dm6]	A	T	2.241e^-5	0.288	INTRON ASPP
2R	17120436	2R_17120436_SNP [dm3] 2R_21232931_SNP [dm6]	G	T	2.241e^-5	0.288	INTRON ASPP
2L	8233001	2L_8233001_SNP [dm3] 2L_8233001_SNP [dm6]	G	T	2.258e^-5	0.288	INTRON Pvr
2L	9078000	2L_9078000_SNP [dm3] 2L_9078000_SNP [dm6]	T	C	2.278e^-5	0.288	DOWNSTREAM CG12439 INTERGENIC
2L	10294252	2L_10294252_SNP [dm3] 2L_10294252_SNP [dm6]	G	T	2.290e^-5	0.288	INTRON Hand	regulatory region REDfly_CRMs
2L	12323670	2L_12323670_SNP [dm3] 2L_12323670_SNP [dm6]	G	A	2.290e^-5	0.288	INTERGENIC
2L	12323723	2L_12323723_SNP [dm3] 2L_12323723_SNP [dm6]	G	A	2.290e^-5	0.288	INTERGENIC
2R	6587171	2R_6587171_SNP [dm3] 2R_10699666_SNP [dm6]	C	T	2.290e^-5	0.288	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6587240	2R_6587240_SNP [dm3] 2R_10699735_SNP [dm6]	T	G	2.290e^-5	0.288	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7272804	3L_7272804_SNP [dm3] 3L_7279704_SNP [dm6]	C	T	2.290e^-5	0.288	INTRON unc-13-4A
3L	7272806	3L_7272806_SNP [dm3] 3L_7279706_SNP [dm6]	G	C	2.290e^-5	0.288	INTRON unc-13-4A
3L	7272823	3L_7272823_SNP [dm3] 3L_7279723_SNP [dm6]	G	C	2.290e^-5	0.288	INTRON unc-13-4A
3R	14817825	3R_14817825_SNP [dm3] 3R_18992103_SNP [dm6]	G	T	2.290e^-5	0.288	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24863201	3R_24863201_SNP [dm3] 3R_29037479_SNP [dm6]	G	C	2.290e^-5	0.288	SYNONYMOUS_CODING Slu7 DOWNSTREAM Cpsf100
3R	24864078	3R_24864078_SNP [dm3] 3R_29038356_SNP [dm6]	C	T	2.290e^-5	0.288	UPSTREAM Pkc98E INTRON Slu7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24864761	3R_24864761_SNP [dm3] 3R_29039039_SNP [dm6]	T	C	2.290e^-5	0.288	UTR_5_PRIME Slu7 UPSTREAM Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24864846	3R_24864846_SNP [dm3] 3R_29039124_SNP [dm6]	C	T	2.290e^-5	0.288	UPSTREAM Pkc98E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24864992	3R_24864992_SNP [dm3] 3R_29039270_SNP [dm6]	G	C	2.290e^-5	0.288	START_GAINED Pkc98E UTR_5_PRIME Pkc98E UPSTREAM Pkc98E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24864998	3R_24864998_SNP [dm3] 3R_29039276_SNP [dm6]	A	G	2.290e^-5	0.288	UTR_5_PRIME Pkc98E UPSTREAM Pkc98E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24865027	3R_24865027_SNP [dm3] 3R_29039305_SNP [dm6]	G	A	2.290e^-5	0.288	UTR_5_PRIME Pkc98E UPSTREAM Pkc98E & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25812226	3R_25812226_SNP [dm3] 3R_29986504_SNP [dm6]	T	C	2.290e^-5	0.288	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25812394	3R_25812394_SNP [dm3] 3R_29986672_SNP [dm6]	G	A	2.290e^-5	0.288	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25816687	3R_25816687_SNP [dm3] 3R_29990965_SNP [dm6]	C	T	2.290e^-5	0.288	DOWNSTREAM Acph-1 & 1 other INTERGENIC
3R	25817271	3R_25817271_SNP [dm3] 3R_29991549_SNP [dm6]	G	A	2.290e^-5	0.288	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
3R	25817272	3R_25817272_SNP [dm3] 3R_29991550_SNP [dm6]	T	A	2.290e^-5	0.288	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
3R	25818957	3R_25818957_SNP [dm3] 3R_29993235_SNP [dm6]	G	A	2.290e^-5	0.288	START_GAINED Acph-1 UTR_5_PRIME Acph-1 DOWNSTREAM CG7903 INTRON Acph-1	TF binding site mE1_TFBS_cad
3R	25824752	3R_25824752_SNP [dm3] 3R_29999030_SNP [dm6]	C	G	2.290e^-5	0.288	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25825044	3R_25825044_SNP [dm3] 3R_29999322_SNP [dm6]	C	T	2.290e^-5	0.288	NON_SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25835990	3R_25835990_SNP [dm3] 3R_30010268_SNP [dm6]	T	A	2.290e^-5	0.288	UTR_3_PRIME Nlp DOWNSTREAM CG7920
3R	25837877	3R_25837877_SNP [dm3] 3R_30012155_SNP [dm6]	C	T	2.290e^-5	0.288	INTRON CG7920	TF binding site mE1_TFBS_cad
3R	25838010	3R_25838010_SNP [dm3] 3R_30012288_SNP [dm6]	G	A	2.290e^-5	0.288	INTRON CG7920
3R	25844799	3R_25844799_SNP [dm3] 3R_30019077_SNP [dm6]	G	A	2.290e^-5	0.288	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
3R	25846925	3R_25846925_SNP [dm3] 3R_30021203_SNP [dm6]	G	T	2.290e^-5	0.288	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25846949	3R_25846949_SNP [dm3] 3R_30021227_SNP [dm6]	G	T	2.290e^-5	0.288	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25846982	3R_25846982_SNP [dm3] 3R_30021260_SNP [dm6]	G	A	2.290e^-5	0.288	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25847044	3R_25847044_SNP [dm3] 3R_30021322_SNP [dm6]	A	G	2.290e^-5	0.288	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25847087	3R_25847087_SNP [dm3] 3R_30021365_SNP [dm6]	C	T	2.290e^-5	0.288	DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25847089	3R_25847089_SNP [dm3] 3R_30021367_SNP [dm6]	C	T	2.290e^-5	0.288	DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25848106	3R_25848106_SNP [dm3] 3R_30022384_SNP [dm6]	A	G	2.290e^-5	0.288	UTR_3_PRIME RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3061166	3R_3061166_SNP [dm3] 3R_7235444_SNP [dm6]	A	C	2.290e^-5	0.288	INTRON CG14608
3R	9724496	3R_9724496_SNP [dm3] 3R_13898774_SNP [dm6]	T	G	2.290e^-5	0.288	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9738602	3R_9738602_SNP [dm3] 3R_13912880_SNP [dm6]	G	A	2.290e^-5	0.288	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9738633	3R_9738633_SNP [dm3] 3R_13912911_SNP [dm6]	G	T	2.290e^-5	0.288	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9738828	3R_9738828_SNP [dm3] 3R_13913106_SNP [dm6]	A	G	2.290e^-5	0.288	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1899218	3L_1899218_SNP [dm3] 3L_1899218_SNP [dm6]	G	T	2.310e^-5	0.288	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	8179360	2L_8179360_SNP [dm3] 2L_8179360_SNP [dm6]	C	A	2.315e^-5	0.288	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8179381	2L_8179381_SNP [dm3] 2L_8179381_SNP [dm6]	G	A	2.315e^-5	0.288	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad
3R	19673652	3R_19673652_SNP [dm3] 3R_23847930_SNP [dm6]	C	T	2.316e^-5	0.288	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11085153	3L_11085153_SNP [dm3] 3L_11092053_SNP [dm6]	A	G	2.329e^-5	0.288	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5544154	2L_5544154_SNP [dm3] 2L_5544154_SNP [dm6]	A	C	2.338e^-5	0.288	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20457321	3R_20457321_SNP [dm3] 3R_24631599_SNP [dm6]	T	G	2.393e^-5	0.291	INTRON atl
3R	21671397	3R_21671397_INS [dm3] 3R_25845675_INS [dm6]	A	AGAGCAG	2.411e^-5	0.291	UPSTREAM CR45654 INTERGENIC
3L	10780746	3L_10780746_SNP [dm3] 3L_10787646_SNP [dm6]	C	T	2.440e^-5	0.291	INTERGENIC
2R	8539089	2R_8539089_SNP [dm3] 2R_12651584_SNP [dm6]	A	T	2.466e^-5	0.291	SYNONYMOUS_CODING CG8778
2L	8912815	2L_8912815_SNP [dm3] 2L_8912815_SNP [dm6]	T	G	2.484e^-5	0.291	INTRON CG34398
3L	2851859	3L_2851859_SNP [dm3] 3L_2851859_SNP [dm6]	A	G	2.556e^-5	0.291	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24886285	3R_24886285_SNP [dm3] 3R_29060563_SNP [dm6]	T	A	2.568e^-5	0.291	INTRON Cul5
3R	9723676	3R_9723676_SNP [dm3] 3R_13897954_SNP [dm6]	T	C	2.621e^-5	0.291	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10218409	3L_10218409_SNP [dm3] 3L_10225309_SNP [dm6]	T	A	2.641e^-5	0.291	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15904213	2L_15904213_SNP [dm3] 2L_15904213_SNP [dm6]	C	T	2.725e^-5	0.291	DOWNSTREAM beat-Ib INTERGENIC
2L	15904281	2L_15904281_INS [dm3] 2L_15904281_INS [dm6]	C	CTGGAC	2.725e^-5	0.291	DOWNSTREAM beat-Ib INTERGENIC
2L	15904935	2L_15904935_SNP [dm3] 2L_15904935_SNP [dm6]	G	A	2.725e^-5	0.291	DOWNSTREAM beat-Ib INTERGENIC
3R	9721734	3R_9721734_SNP [dm3] 3R_13896012_SNP [dm6]	A	C	2.786e^-5	0.291	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13947811	2L_13947811_SNP [dm3] 2L_13947811_SNP [dm6]	T	G	2.823e^-5	0.291	UPSTREAM CG16884 INTRON Ance-3
2R	16409961	2R_16409961_SNP [dm3] 2R_20522456_SNP [dm6]	C	T	2.855e^-5	0.291	INTERGENIC
2R	16410563	2R_16410563_DEL [dm3] 2R_20523058_DEL [dm6]	GAAGGTTGGT	G	2.855e^-5	0.291	INTERGENIC
2R	16410575	2R_16410575_SNP [dm3] 2R_20523070_SNP [dm6]	G	C	2.855e^-5	0.291	INTERGENIC
2R	16410662	2R_16410662_SNP [dm3] 2R_20523157_SNP [dm6]	A	C	2.855e^-5	0.291	INTERGENIC
3L	12564217	3L_12564217_SNP [dm3] 3L_12571117_SNP [dm6]	T	C	2.855e^-5	0.291	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9081266	3L_9081266_SNP [dm3] 3L_9088166_SNP [dm6]	A	G	2.855e^-5	0.291	NON_SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23437109	3R_23437109_SNP [dm3] 3R_27611387_SNP [dm6]	C	T	2.855e^-5	0.291	INTRON Tusp	TF binding site mE1_TFBS_sbb
3R	24025285	3R_24025285_SNP [dm3] 3R_28199563_SNP [dm6]	A	G	2.855e^-5	0.291	INTRON CG34354
X	10223547	X_10223547_SNP [dm3] X_10329514_SNP [dm6]	T	C	2.855e^-5	0.291	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other
X	10830776	X_10830776_SNP [dm3] X_10936743_SNP [dm6]	A	T	2.855e^-5	0.291	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10832811	X_10832811_SNP [dm3] X_10938778_SNP [dm6]	A	C	2.855e^-5	0.291	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833484	X_10833484_DEL [dm3] X_10939451_DEL [dm6]	TTAGAAAAACATGGCATGAA...	GTAAAATT	2.855e^-5	0.291	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833615	X_10833615_SNP [dm3] X_10939582_SNP [dm6]	A	G	2.855e^-5	0.291	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14808035	X_14808035_SNP [dm3] X_14914002_SNP [dm6]	A	T	2.855e^-5	0.291	UPSTREAM CG12398 INTRON Flo2
X	14808095	X_14808095_SNP [dm3] X_14914062_SNP [dm6]	A	T	2.855e^-5	0.291	UPSTREAM CG12398 INTRON Flo2
X	14808305	X_14808305_SNP [dm3] X_14914272_SNP [dm6]	A	T	2.855e^-5	0.291	UPSTREAM CG12398 INTRON Flo2
X	9658120	X_9658120_SNP [dm3] X_9764087_SNP [dm6]	T	C	2.855e^-5	0.291	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7631221	2L_7631221_SNP [dm3] 2L_7631221_SNP [dm6]	T	G	2.881e^-5	0.292	INTERGENIC
2L	8909879	2L_8909879_SNP [dm3] 2L_8909879_SNP [dm6]	G	C	2.901e^-5	0.292	INTRON CG34398
2R	9781902	2R_9781902_SNP [dm3] 2R_13894397_SNP [dm6]	A	T	2.964e^-5	0.294	SYNONYMOUS_CODING shot INTRON shot
3R	24726663	3R_24726663_SNP [dm3] 3R_28900941_SNP [dm6]	T	C	2.982e^-5	0.294	SYNONYMOUS_CODING Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2521455	2L_2521455_INS [dm3] 2L_2521455_INS [dm6]	T	TTTAA	2.985e^-5	0.294	INTERGENIC
2L	2521459	2L_2521459_INS [dm3] 2L_2521459_INS [dm6]	G	AACCATTATATCTGT...	2.985e^-5	0.294	INTERGENIC
2L	18728031	2L_18728031_SNP [dm3] 2L_18728031_SNP [dm6]	T	C	3.039e^-5	0.298	INTRON CG10348
3L	7899124	3L_7899124_INS [dm3] 3L_7906024_INS [dm6]	A	AA	3.112e^-5	0.301	INTRON pbl
3R	25846929	3R_25846929_SNP [dm3] 3R_30021207_SNP [dm6]	G	T	3.137e^-5	0.301	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	9488361	3R_9488361_SNP [dm3] 3R_13662639_SNP [dm6]	G	A	3.182e^-5	0.301	INTRON B52	TF binding site BDTNP1_TFBS_dl
2L	18350443	2L_18350443_SNP [dm3] 2L_18350443_SNP [dm6]	T	C	3.266e^-5	0.301	INTRON Fas3
2R	1379861	2R_1379861_SNP [dm3] 2R_5492356_SNP [dm6]	A	T	3.280e^-5	0.301	INTRON CG30440
3L	10245843	3L_10245843_SNP [dm3] 3L_10252743_SNP [dm6]	T	A	3.310e^-5	0.301	INTERGENIC
2R	17120354	2R_17120354_SNP [dm3] 2R_21232849_SNP [dm6]	C	T	3.340e^-5	0.301	INTRON ASPP
3L	8841479	3L_8841479_INS [dm3] 3L_8848379_INS [dm6]	A	ATATGA	3.346e^-5	0.301	INTRON dally	TF binding site mE1_TFBS_HSA
2L	6007262	2L_6007262_DEL [dm3] 2L_6007262_DEL [dm6]	TAAT	T	3.381e^-5	0.301	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
3R	7766736	3R_7766736_SNP [dm3] 3R_11941014_SNP [dm6]	A	C	3.381e^-5	0.301	INTRON Cad87A
2L	10217874	2L_10217874_SNP [dm3] 2L_10217874_SNP [dm6]	C	T	3.386e^-5	0.301	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19236836	2L_19236836_SNP [dm3] 2L_19236836_SNP [dm6]	A	T	3.386e^-5	0.301	INTERGENIC
2L	7631236	2L_7631236_SNP [dm3] 2L_7631236_SNP [dm6]	C	T	3.396e^-5	0.301	INTERGENIC
2L	7631243	2L_7631243_DEL [dm3] 2L_7631243_DEL [dm6]	CCTATGTTG	C	3.396e^-5	0.301	INTERGENIC
3L	11076973	3L_11076973_INS [dm3] 3L_11083873_INS [dm6]	A	AA	3.397e^-5	0.301	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl
2L	14112113	2L_14112113_SNP [dm3] 2L_14112113_SNP [dm6]	A	G	3.451e^-5	0.301	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9145451	3L_9145451_SNP [dm3] 3L_9152351_SNP [dm6]	G	A	3.451e^-5	0.301	INTRON Rdl	TF binding site BDTNP1_TFBS_dl
3R	25181768	3R_25181768_SNP [dm3] 3R_29356046_SNP [dm6]	G	C	3.451e^-5	0.301	DOWNSTREAM CR45547 INTERGENIC
3R	9736797	3R_9736797_SNP [dm3] 3R_13911075_SNP [dm6]	C	T	3.451e^-5	0.301	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17607858	3L_17607858_SNP [dm3] 3L_17614758_SNP [dm6]	A	T	3.494e^-5	0.301	INTRON Eip74EF	TF binding site mE1_TFBS_HSA
3R	25812499	3R_25812499_SNP [dm3] 3R_29986777_SNP [dm6]	G	A	3.518e^-5	0.301	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25812552	3R_25812552_SNP [dm3] 3R_29986830_SNP [dm6]	T	A	3.518e^-5	0.301	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25812580	3R_25812580_SNP [dm3] 3R_29986858_SNP [dm6]	T	A	3.518e^-5	0.301	INTRON CG7896	TF binding site mE1_TFBS_HSA
3R	3277143	3R_3277143_SNP [dm3] 3R_7451421_SNP [dm6]	C	T	3.541e^-5	0.301	UPSTREAM mir-4950 & 1 other DOWNSTREAM tRNA:V3b:84Db INTERGENIC
2R	9783844	2R_9783844_SNP [dm3] 2R_13896339_SNP [dm6]	T	C	3.555e^-5	0.301	INTRON shot
3R	17974090	3R_17974090_SNP [dm3] 3R_22148368_SNP [dm6]	C	T	3.565e^-5	0.301	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	19576063	3R_19576063_SNP [dm3] 3R_23750341_SNP [dm6]	T	C	3.565e^-5	0.301	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
3R	24023272	3R_24023272_SNP [dm3] 3R_28197550_SNP [dm6]	G	A	3.565e^-5	0.301	INTRON CG34354	TF binding site mE1_TFBS_inv
X	10833367	X_10833367_SNP [dm3] X_10939334_SNP [dm6]	A	C	3.565e^-5	0.301	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19345346	3R_19345346_SNP [dm3] 3R_23519624_SNP [dm6]	G	A	3.573e^-5	0.301	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
3R	24864620	3R_24864620_SNP [dm3] 3R_29038898_SNP [dm6]	A	G	3.586e^-5	0.301	SYNONYMOUS_CODING Slu7 UPSTREAM Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	12113530	3R_12113530_SNP [dm3] 3R_16287808_SNP [dm6]	A	T	3.660e^-5	0.301	INTRON gish
3R	24816151	3R_24816151_SNP [dm3] 3R_28990429_SNP [dm6]	G	A	3.668e^-5	0.301	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19256463	2L_19256463_SNP [dm3] 2L_19256463_SNP [dm6]	G	T	3.757e^-5	0.301	INTERGENIC
2L	19259237	2L_19259237_SNP [dm3] 2L_19259237_SNP [dm6]	T	C	3.757e^-5	0.301	DOWNSTREAM CG31797 INTERGENIC
2L	19259431	2L_19259431_INS [dm3] 2L_19259431_INS [dm6]	T	ATATGCACTACCTTTTTC...	3.757e^-5	0.301	DOWNSTREAM CG31797 INTERGENIC
2L	19259486	2L_19259486_INS [dm3] 2L_19259486_INS [dm6]	C	TATGT	3.757e^-5	0.301	UTR_3_PRIME CG31797	TF binding site BDTNP1_TFBS_dl
2L	19259505	2L_19259505_SNP [dm3] 2L_19259505_SNP [dm6]	A	G	3.757e^-5	0.301	UTR_3_PRIME CG31797	TF binding site BDTNP1_TFBS_dl
2L	19259512	2L_19259512_SNP [dm3] 2L_19259512_SNP [dm6]	G	C	3.757e^-5	0.301	UTR_3_PRIME CG31797	TF binding site BDTNP1_TFBS_dl
3L	3486344	3L_3486344_SNP [dm3] 3L_3486344_SNP [dm6]	T	C	3.764e^-5	0.301	INTRON CG42324
2R	17119876	2R_17119876_SNP [dm3] 2R_21232371_SNP [dm6]	G	C	3.772e^-5	0.301	INTRON ASPP
3R	17353509	3R_17353509_SNP [dm3] 3R_21527787_SNP [dm6]	G	A	3.772e^-5	0.301	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
3R	17682806	3R_17682806_SNP [dm3] 3R_21857084_SNP [dm6]	T	C	3.783e^-5	0.301	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	13552689	3R_13552689_SNP [dm3] 3R_17726967_SNP [dm6]	C	T	3.801e^-5	0.301	INTRON Lgr1	TF binding site mE1_TFBS_HSA
2L	13948037	2L_13948037_SNP [dm3] 2L_13948037_SNP [dm6]	C	T	3.807e^-5	0.301	UPSTREAM CG16884 INTRON Ance-3
3R	8779105	3R_8779105_SNP [dm3] 3R_12953383_SNP [dm6]	A	T	3.824e^-5	0.302	INTRON grsm
X	14806335	X_14806335_SNP [dm3] X_14912302_SNP [dm6]	G	A	3.879e^-5	0.303	SYNONYMOUS_CODING CG12398 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	16450662	3L_16450662_SNP [dm3] 3L_16457562_SNP [dm6]	A	T	3.886e^-5	0.303	INTRON CG33158
3L	9081288	3L_9081288_SNP [dm3] 3L_9088188_SNP [dm6]	A	T	3.895e^-5	0.303	NON_SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5096472	2R_5096472_SNP [dm3] 2R_9208967_SNP [dm6]	C	T	4.002e^-5	0.308	SYNONYMOUS_CODING VhaAC45	TF binding site mE1_TFBS_sens
3R	15447503	3R_15447503_SNP [dm3] 3R_19621781_SNP [dm6]	C	G	4.002e^-5	0.308	UPSTREAM CG6231 INTRON CG6231
X	10225726	X_10225726_SNP [dm3] X_10331693_SNP [dm6]	C	G	4.002e^-5	0.308	UTR_5_PRIME CG15306
3R	18593211	3R_18593211_SNP [dm3] 3R_22767489_SNP [dm6]	G	A	4.034e^-5	0.308	DOWNSTREAM CG43091 INTRON Usp12-46 & 2 others
2L	8168470	2L_8168470_SNP [dm3] 2L_8168470_SNP [dm6]	G	T	4.038e^-5	0.308	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15068061	3R_15068061_SNP [dm3] 3R_19242339_SNP [dm6]	G	T	4.122e^-5	0.311	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9581569	2L_9581569_SNP [dm3] 2L_9581569_SNP [dm6]	T	G	4.175e^-5	0.311	SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19156823	3R_19156823_SNP [dm3] 3R_23331101_SNP [dm6]	G	T	4.195e^-5	0.311	INTRON pnt
3R	26200994	3R_26200994_SNP [dm3] 3R_30375272_SNP [dm6]	C	G	4.201e^-5	0.311	INTERGENIC
2R	12879449	2R_12879449_SNP [dm3] 2R_16991944_SNP [dm6]	T	A	4.229e^-5	0.311	INTRON Cbp53E
2R	12879473	2R_12879473_SNP [dm3] 2R_16991968_SNP [dm6]	A	T	4.229e^-5	0.311	INTRON Cbp53E
3R	25846983	3R_25846983_SNP [dm3] 3R_30021261_SNP [dm6]	A	C	4.255e^-5	0.311	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	12874251	X_12874251_SNP [dm3] X_12980218_SNP [dm6]	T	G	4.313e^-5	0.311	INTERGENIC
3L	591950	3L_591950_SNP [dm3] 3L_591950_SNP [dm6]	T	C	4.331e^-5	0.311	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7826415	2L_7826415_SNP [dm3] 2L_7826415_SNP [dm6]	T	C	4.334e^-5	0.311	INTRON Rack1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10905499	X_10905499_SNP [dm3] X_11011466_SNP [dm6]	G	A	4.361e^-5	0.311	INTRON CG42339	TF binding site mE1_TFBS_HSA
3R	19157722	3R_19157722_SNP [dm3] 3R_23332000_SNP [dm6]	T	A	4.372e^-5	0.311	INTRON pnt
2R	1626590	2R_1626590_SNP [dm3] 2R_5739085_SNP [dm6]	C	A	4.382e^-5	0.311	INTERGENIC	regulatory region REDfly_CRMs
3R	17973682	3R_17973682_SNP [dm3] 3R_22147960_SNP [dm6]	A	G	4.406e^-5	0.311	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	9757719	3R_9757719_DEL [dm3] 3R_13931997_DEL [dm6]	GAAATTC	G	4.413e^-5	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	14805671	X_14805671_SNP [dm3] X_14911638_SNP [dm6]	T	C	4.440e^-5	0.311	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2R	19206191	2R_19206191_SNP [dm3] 2R_23318668_SNP [dm6]	A	G	4.503e^-5	0.311	SYNONYMOUS_CODING CG30412	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8007838	2L_8007838_SNP [dm3] 2L_8007838_SNP [dm6]	C	A	4.564e^-5	0.311	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC
2L	19944840	2L_19944840_SNP [dm3] 2L_19944840_SNP [dm6]	C	T	4.569e^-5	0.311	INTRON sick
3R	24229076	3R_24229076_SNP [dm3] 3R_28403354_SNP [dm6]	A	G	4.588e^-5	0.311	INTERGENIC
X	1647996	X_1647996_SNP [dm3] X_1753963_SNP [dm6]	G	T	4.595e^-5	0.311	UTR_5_PRIME Scgdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18637389	2R_18637389_SNP [dm3] 2R_22749884_SNP [dm6]	C	T	4.622e^-5	0.311	INTRON CG42260
3L	11085131	3L_11085131_DEL [dm3] 3L_11092031_DEL [dm6]	AATA	G	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11085139	3L_11085139_SNP [dm3] 3L_11092039_SNP [dm6]	A	C	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11085144	3L_11085144_SNP [dm3] 3L_11092044_SNP [dm6]	T	C	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11085160	3L_11085160_SNP [dm3] 3L_11092060_SNP [dm6]	A	T	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11085162	3L_11085162_SNP [dm3] 3L_11092062_SNP [dm6]	G	C	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11085176	3L_11085176_INS [dm3] 3L_11092076_INS [dm6]	A	ATGTA	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11085191	3L_11085191_SNP [dm3] 3L_11092091_SNP [dm6]	T	A	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11085233	3L_11085233_SNP [dm3] 3L_11092133_SNP [dm6]	T	A	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11085309	3L_11085309_SNP [dm3] 3L_11092209_SNP [dm6]	T	A	4.622e^-5	0.311	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18611492	3R_18611492_SNP [dm3] 3R_22785770_SNP [dm6]	G	A	4.624e^-5	0.311	INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6024899	2R_6024899_SNP [dm3] 2R_10137394_SNP [dm6]	T	G	4.674e^-5	0.314	UTR_3_PRIME gem UPSTREAM CG12917
2L	7631225	2L_7631225_SNP [dm3] 2L_7631225_SNP [dm6]	A	T	4.706e^-5	0.314	INTERGENIC
3L	11131822	3L_11131822_SNP [dm3] 3L_11138722_SNP [dm6]	A	G	4.715e^-5	0.314	INTRON CG32082
3R	25068857	3R_25068857_SNP [dm3] 3R_29243135_SNP [dm6]	G	A	4.811e^-5	0.319	INTRON CG31445
3R	25813683	3R_25813683_SNP [dm3] 3R_29987961_SNP [dm6]	G	T	4.823e^-5	0.319	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1025785	2L_1025785_SNP [dm3] 2L_1025785_SNP [dm6]	G	T	4.849e^-5	0.32	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	6187849	2L_6187849_SNP [dm3] 2L_6187849_SNP [dm6]	C	A	4.903e^-5	0.322	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20361871	3R_20361871_INS [dm3] 3R_24536149_INS [dm6]	T	TCAG	4.933e^-5	0.323	CODON_INSERTION ana1 DOWNSTREAM CG5789
X	10224427	X_10224427_SNP [dm3] X_10330394_SNP [dm6]	C	G	4.983e^-5	0.324	NON_SYNONYMOUS_CODING CG15306 UPSTREAM Gip
X	10819678	X_10819678_SNP [dm3] X_10925645_SNP [dm6]	C	T	5.005e^-5	0.324	DOWNSTREAM v INTERGENIC
3R	18782713	3R_18782713_SNP [dm3] 3R_22956991_SNP [dm6]	G	A	5.019e^-5	0.324	INTRON klg
3R	23070628	3R_23070628_SNP [dm3] 3R_27244906_SNP [dm6]	G	A	5.034e^-5	0.324	UPSTREAM CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26201058	3R_26201058_SNP [dm3] 3R_30375336_SNP [dm6]	T	G	5.047e^-5	0.324	INTERGENIC
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	5.123e^-5	0.325	INTRON Cyp313a4
2R	10554415	2R_10554415_SNP [dm3] 2R_14666910_SNP [dm6]	T	G	5.130e^-5	0.325	UPSTREAM CG12860 INTERGENIC
3L	9081225	3L_9081225_SNP [dm3] 3L_9088125_SNP [dm6]	C	T	5.149e^-5	0.325	NON_SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9081247	3L_9081247_SNP [dm3] 3L_9088147_SNP [dm6]	C	T	5.149e^-5	0.325	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19980754	3R_19980754_SNP [dm3] 3R_24155032_SNP [dm6]	T	C	5.149e^-5	0.325	UTR_3_PRIME Myo95E DOWNSTREAM Myo95E & 1 other
3R	8885950	3R_8885950_SNP [dm3] 3R_13060228_SNP [dm6]	T	A	5.169e^-5	0.325	INTRON sim	TF binding site BDTNP1_TFBS_prd
3L	9362610	3L_9362610_SNP [dm3] 3L_9369510_SNP [dm6]	C	G	5.214e^-5	0.325	DOWNSTREAM Fdxh INTRON CG4452	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9362619	3L_9362619_INS [dm3] 3L_9369519_INS [dm6]	T	TGCT	5.214e^-5	0.325	DOWNSTREAM Fdxh INTRON CG4452	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9362630	3L_9362630_DEL [dm3] 3L_9369530_DEL [dm6]	AA	A	5.214e^-5	0.325	DOWNSTREAM Fdxh INTRON CG4452	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6458982	2R_6458982_SNP [dm3] 2R_10571477_SNP [dm6]	A	T	5.259e^-5	0.327	INTRON psq
X	6724622	X_6724622_SNP [dm3] X_6830589_SNP [dm6]	T	C	5.283e^-5	0.327	SYNONYMOUS_CODING nonC DOWNSTREAM CG12796	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12318049	3L_12318049_SNP [dm3] 3L_12324949_SNP [dm6]	A	T	5.334e^-5	0.329	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12102888	3R_12102888_SNP [dm3] 3R_16277166_SNP [dm6]	T	A	5.353e^-5	0.329	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19924397	3R_19924397_SNP [dm3] 3R_24098675_SNP [dm6]	A	T	5.366e^-5	0.329	INTRON 4EHP
2L	9581443	2L_9581443_SNP [dm3] 2L_9581443_SNP [dm6]	G	A	5.382e^-5	0.329	SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12754824	3R_12754824_SNP [dm3] 3R_16929102_SNP [dm6]	T	C	5.421e^-5	0.329	UTR_3_PRIME Abd-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24419847	3R_24419847_SNP [dm3] 3R_28594125_SNP [dm6]	T	C	5.426e^-5	0.329	EXON CR43440
3L	11086791	3L_11086791_SNP [dm3] 3L_11093691_SNP [dm6]	T	C	5.617e^-5	0.339	SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	1404184	2L_1404184_SNP [dm3] 2L_1404184_SNP [dm6]	T	A	5.626e^-5	0.339	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
2L	4892215	2L_4892215_SNP [dm3] 2L_4892215_SNP [dm6]	C	T	5.709e^-5	0.343	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	9714528	3R_9714528_SNP [dm3] 3R_13888806_SNP [dm6]	T	A	5.721e^-5	0.343	INTERGENIC
3R	8053729	3R_8053729_SNP [dm3] 3R_12228007_SNP [dm6]	T	C	5.761e^-5	0.344	INTERGENIC
3L	2851423	3L_2851423_SNP [dm3] 3L_2851423_SNP [dm6]	A	T	5.909e^-5	0.345	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8064836	3L_8064836_SNP [dm3] 3L_8071736_SNP [dm6]	C	G	5.909e^-5	0.345	UTR_5_PRIME Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24874073	3R_24874073_SNP [dm3] 3R_29048351_SNP [dm6]	G	A	5.909e^-5	0.345	UTR_3_PRIME Pkc98E
3R	24874279	3R_24874279_SNP [dm3] 3R_29048557_SNP [dm6]	T	C	5.909e^-5	0.345	UTR_3_PRIME Pkc98E UPSTREAM CG11837
3R	24874529	3R_24874529_DEL [dm3] 3R_29048807_DEL [dm6]	ACAACA	A	5.909e^-5	0.345	UTR_3_PRIME Pkc98E UPSTREAM CG11837
3R	24876710	3R_24876710_SNP [dm3] 3R_29050988_SNP [dm6]	C	T	5.909e^-5	0.345	UPSTREAM CG11841 DOWNSTREAM CG11837 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13371509	3R_13371509_SNP [dm3] 3R_17545787_SNP [dm6]	G	A	5.927e^-5	0.345	SYNONYMOUS_CODING Prx3 DOWNSTREAM SF1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13333132	2R_13333132_SNP [dm3] 2R_17445627_SNP [dm6]	T	A	5.969e^-5	0.345	SYNONYMOUS_CODING mthl4 UPSTREAM EDTP	TF binding site mE1_TFBS_bab1
3R	27191769	3R_27191769_SNP [dm3] 3R_31366047_SNP [dm6]	T	A	5.971e^-5	0.345	INTRON CG34347
3R	27191770	3R_27191770_SNP [dm3] 3R_31366048_SNP [dm6]	A	C	5.971e^-5	0.345	INTRON CG34347
3R	10689620	3R_10689620_SNP [dm3] 3R_14863898_SNP [dm6]	C	A	5.986e^-5	0.345	INTRON btsz
2R	16533024	2R_16533024_SNP [dm3] 2R_20645519_SNP [dm6]	A	G	6.114e^-5	0.351	SYNONYMOUS_CODING DMAP1 UPSTREAM Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11236995	3L_11236995_SNP [dm3] 3L_11243895_SNP [dm6]	A	G	6.194e^-5	0.352	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	7632163	2R_7632163_SNP [dm3] 2R_11744658_SNP [dm6]	C	T	6.208e^-5	0.352	INTERGENIC	TF binding site mE1_TFBS_sens
X	9630626	X_9630626_SNP [dm3] X_9736593_SNP [dm6]	G	A	6.208e^-5	0.352	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12323706	2L_12323706_SNP [dm3] 2L_12323706_SNP [dm6]	T	G	6.228e^-5	0.352	INTERGENIC
X	11302678	X_11302678_SNP [dm3] X_11408645_SNP [dm6]	G	A	6.235e^-5	0.352	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
2L	1606769	2L_1606769_SNP [dm3] 2L_1606769_SNP [dm6]	G	A	6.254e^-5	0.352	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo
3L	14596404	3L_14596404_SNP [dm3] 3L_14603304_SNP [dm6]	T	C	6.255e^-5	0.352	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	8784046	3R_8784046_SNP [dm3] 3R_12958324_SNP [dm6]	C	T	6.302e^-5	0.353	INTRON grsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4894007	2L_4894007_SNP [dm3] 2L_4894007_SNP [dm6]	C	A	6.345e^-5	0.355	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8232943	2L_8232943_SNP [dm3] 2L_8232943_SNP [dm6]	C	A	6.385e^-5	0.355	INTRON Pvr
3R	3595060	3R_3595060_SNP [dm3] 3R_7769338_SNP [dm6]	T	C	6.388e^-5	0.355	INTERGENIC
2L	7824249	2L_7824249_SNP [dm3] 2L_7824249_SNP [dm6]	A	G	6.418e^-5	0.355	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7824318	2L_7824318_SNP [dm3] 2L_7824318_SNP [dm6]	A	G	6.418e^-5	0.355	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3277742	3R_3277742_SNP [dm3] 3R_7452020_SNP [dm6]	T	A	6.521e^-5	0.355	UPSTREAM tRNA:V3b:84Da DOWNSTREAM tRNA:V3b:84Db & 1 other INTERGENIC
2R	5088520	2R_5088520_SNP [dm3] 2R_9201015_SNP [dm6]	C	T	6.522e^-5	0.355	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5677262	2L_5677262_SNP [dm3] 2L_5677262_SNP [dm6]	A	T	6.526e^-5	0.355	INTERGENIC
2L	5677287	2L_5677287_SNP [dm3] 2L_5677287_SNP [dm6]	C	T	6.526e^-5	0.355	INTERGENIC
2L	5677328	2L_5677328_SNP [dm3] 2L_5677328_SNP [dm6]	G	T	6.526e^-5	0.355	INTERGENIC
3R	25841174	3R_25841174_SNP [dm3] 3R_30015452_SNP [dm6]	T	C	6.556e^-5	0.356	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	12096891	2R_12096891_SNP [dm3] 2R_16209386_SNP [dm6]	C	T	6.601e^-5	0.357	INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	9360210	3L_9360210_SNP [dm3] 3L_9367110_SNP [dm6]	A	G	6.623e^-5	0.357	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3R	17962150	3R_17962150_SNP [dm3] 3R_22136428_SNP [dm6]	A	G	6.637e^-5	0.357	INTRON SKIP
3L	2842990	3L_2842990_SNP [dm3] 3L_2842990_SNP [dm6]	C	T	6.682e^-5	0.358	INTRON CG43444
2R	10346831	2R_10346831_SNP [dm3] 2R_14459326_SNP [dm6]	G	C	6.739e^-5	0.36	INTRON Oaz
2R	18522083	2R_18522083_SNP [dm3] 2R_22634578_SNP [dm6]	G	T	6.831e^-5	0.36	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18522271	2R_18522271_SNP [dm3] 2R_22634766_SNP [dm6]	A	C	6.831e^-5	0.36	NON_SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18522361	2R_18522361_SNP [dm3] 2R_22634856_SNP [dm6]	T	C	6.831e^-5	0.36	NON_SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18522368	2R_18522368_SNP [dm3] 2R_22634863_SNP [dm6]	A	C	6.831e^-5	0.36	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	3769184	2R_3769184_SNP [dm3] 2R_7881679_SNP [dm6]	T	A	6.838e^-5	0.36	INTRON Dgk
2L	10415593	2L_10415593_SNP [dm3] 2L_10415593_SNP [dm6]	T	C	6.866e^-5	0.361	SYNONYMOUS_CODING Klp31E
2R	8537723	2R_8537723_DEL [dm3] 2R_12650218_DEL [dm6]	TCTTGT	T	6.931e^-5	0.362	INTERGENIC
3R	9489298	3R_9489298_SNP [dm3] 3R_13663576_SNP [dm6]	C	G	6.933e^-5	0.362	UTR_3_PRIME B52 INTRON B52
3R	25844307	3R_25844307_SNP [dm3] 3R_30018585_SNP [dm6]	G	C	7.012e^-5	0.365	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19644482	3L_19644482_SNP [dm3] 3L_19651382_SNP [dm6]	A	G	7.057e^-5	0.365	INTRON tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10833802	X_10833802_SNP [dm3] X_10939769_SNP [dm6]	C	G	7.057e^-5	0.365	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10670326	2L_10670326_SNP [dm3] 2L_10670326_SNP [dm6]	G	A	7.089e^-5	0.365	INTRON CG31871
2L	10670340	2L_10670340_SNP [dm3] 2L_10670340_SNP [dm6]	C	A	7.089e^-5	0.365	INTRON CG31871
2L	4065414	2L_4065414_SNP [dm3] 2L_4065414_SNP [dm6]	G	T	7.162e^-5	0.366	INTRON ed
2R	16826875	2R_16826875_SNP [dm3] 2R_20939370_SNP [dm6]	A	T	7.170e^-5	0.366	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	17382194	3R_17382194_SNP [dm3] 3R_21556472_SNP [dm6]	G	A	7.207e^-5	0.366	SYNONYMOUS_CODING slou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17382212	3R_17382212_SNP [dm3] 3R_21556490_SNP [dm6]	A	G	7.207e^-5	0.366	SYNONYMOUS_CODING slou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15904480	2L_15904480_SNP [dm3] 2L_15904480_SNP [dm6]	T	A	7.218e^-5	0.366	DOWNSTREAM beat-Ib INTERGENIC
3R	15068066	3R_15068066_SNP [dm3] 3R_19242344_SNP [dm6]	T	A	7.221e^-5	0.366	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11085826	3L_11085826_SNP [dm3] 3L_11092726_SNP [dm6]	C	T	7.234e^-5	0.366	UTR_5_PRIME JIL-1 UPSTREAM JIL-1 DOWNSTREAM CG6279	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17004370	2R_17004370_SNP [dm3] 2R_21116865_SNP [dm6]	G	C	7.302e^-5	0.368	INTRON ktub
2L	15204851	2L_15204851_SNP [dm3] 2L_15204851_SNP [dm6]	C	T	7.397e^-5	0.369	DOWNSTREAM CR43357 INTERGENIC
X	10833713	X_10833713_SNP [dm3] X_10939680_SNP [dm6]	T	A	7.444e^-5	0.369	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10408770	3R_10408770_SNP [dm3] 3R_14583048_SNP [dm6]	C	T	7.528e^-5	0.369	SPLICE_SITE_REGION stumps INTRON stumps
3R	24485819	3R_24485819_SNP [dm3] 3R_28660097_SNP [dm6]	C	T	7.536e^-5	0.369	INTERGENIC
2L	16800868	2L_16800868_SNP [dm3] 2L_16800868_SNP [dm6]	G	A	7.547e^-5	0.369	NON_SYNONYMOUS_CODING Ugt36Bc	TF binding site mE1_TFBS_cad
3R	8128600	3R_8128600_SNP [dm3] 3R_12302878_SNP [dm6]	A	T	7.556e^-5	0.369	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
3R	17941680	3R_17941680_SNP [dm3] 3R_22115958_SNP [dm6]	C	T	7.585e^-5	0.369	NON_SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
3L	7408109	3L_7408109_SNP [dm3] 3L_7415009_SNP [dm6]	C	G	7.601e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7651492	2L_7651492_SNP [dm3] 2L_7651492_SNP [dm6]	A	C	7.620e^-5	0.369	INTRON Slob
3L	12212878	3L_12212878_SNP [dm3] 3L_12219778_SNP [dm6]	A	T	7.620e^-5	0.369	INTRON app
3L	7249899	3L_7249899_SNP [dm3] 3L_7256799_SNP [dm6]	T	C	7.620e^-5	0.369	INTRON CG14830
3R	24866009	3R_24866009_SNP [dm3] 3R_29040287_SNP [dm6]	C	T	7.620e^-5	0.369	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24866300	3R_24866300_SNP [dm3] 3R_29040578_SNP [dm6]	T	A	7.620e^-5	0.369	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23763744	3R_23763744_DEL [dm3] 3R_27938022_DEL [dm6]	TAAT	T	7.625e^-5	0.369	UPSTREAM CG5514 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1769995	3R_1769995_SNP [dm3] 3R_5944273_SNP [dm6]	C	G	7.626e^-5	0.369	INTRON CG34113
2L	13908768	2L_13908768_SNP [dm3] 2L_13908768_SNP [dm6]	T	A	7.694e^-5	0.372	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
X	6724580	X_6724580_SNP [dm3] X_6830547_SNP [dm6]	T	G	7.792e^-5	0.374	SYNONYMOUS_CODING nonC DOWNSTREAM CG12796	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25841211	3R_25841211_SNP [dm3] 3R_30015489_SNP [dm6]	T	A	7.843e^-5	0.374	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	17382210	3R_17382210_SNP [dm3] 3R_21556488_SNP [dm6]	T	C	7.970e^-5	0.374	NON_SYNONYMOUS_CODING slou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10218411	3L_10218411_SNP [dm3] 3L_10225311_SNP [dm6]	T	C	7.978e^-5	0.374	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10218423	3L_10218423_SNP [dm3] 3L_10225323_SNP [dm6]	G	A	7.978e^-5	0.374	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9489432	3R_9489432_SNP [dm3] 3R_13663710_SNP [dm6]	G	T	8.023e^-5	0.374	UTR_3_PRIME B52 INTRON B52
2L	1354672	2L_1354672_SNP [dm3] 2L_1354672_SNP [dm6]	T	C	8.047e^-5	0.374	NON_SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
3R	21393148	3R_21393148_SNP [dm3] 3R_25567426_SNP [dm6]	C	G	8.048e^-5	0.374	INTRON msi
2L	1234895	2L_1234895_SNP [dm3] 2L_1234895_SNP [dm6]	A	G	8.132e^-5	0.374	INTERGENIC
3R	25848100	3R_25848100_SNP [dm3] 3R_30022378_SNP [dm6]	G	T	8.212e^-5	0.374	UTR_3_PRIME RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	667747	2L_667747_SNP [dm3] 2L_667747_SNP [dm6]	A	C	8.325e^-5	0.374	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8093515	3L_8093515_SNP [dm3] 3L_8100415_SNP [dm6]	G	C	8.337e^-5	0.374	UPSTREAM Ect4 INTRON Ect4
3L	9149021	3L_9149021_SNP [dm3] 3L_9155921_SNP [dm6]	C	T	8.337e^-5	0.374	INTRON Rdl
3R	10699990	3R_10699990_SNP [dm3] 3R_14874268_SNP [dm6]	G	T	8.337e^-5	0.374	UPSTREAM btsz INTRON btsz
3R	24864869	3R_24864869_SNP [dm3] 3R_29039147_SNP [dm6]	C	T	8.337e^-5	0.374	UPSTREAM Pkc98E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25834603	3R_25834603_SNP [dm3] 3R_30008881_SNP [dm6]	A	T	8.337e^-5	0.374	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
3R	26704975	3R_26704975_SNP [dm3] 3R_30879253_SNP [dm6]	G	A	8.337e^-5	0.374	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9719155	3R_9719155_SNP [dm3] 3R_13893433_SNP [dm6]	C	T	8.337e^-5	0.374	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24474382	3R_24474382_SNP [dm3] 3R_28648660_SNP [dm6]	G	C	8.344e^-5	0.374	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15904927	2L_15904927_SNP [dm3] 2L_15904927_SNP [dm6]	T	G	8.401e^-5	0.374	DOWNSTREAM beat-Ib INTERGENIC
3L	8890425	3L_8890425_SNP [dm3] 3L_8897325_SNP [dm6]	G	A	8.424e^-5	0.374	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8079319	3R_8079319_SNP [dm3] 3R_12253597_SNP [dm6]	A	G	8.500e^-5	0.374	UPSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7824403	2L_7824403_SNP [dm3] 2L_7824403_SNP [dm6]	A	T	8.504e^-5	0.374	DOWNSTREAM Rack1 INTRON CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16948412	3L_16948412_SNP [dm3] 3L_16955312_SNP [dm6]	T	G	8.662e^-5	0.374	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2L	15204854	2L_15204854_SNP [dm3] 2L_15204854_SNP [dm6]	A	G	8.680e^-5	0.374	DOWNSTREAM CR43357 INTERGENIC
2L	12323708	2L_12323708_SNP [dm3] 2L_12323708_SNP [dm6]	G	A	8.708e^-5	0.374	INTERGENIC
2R	15828008	2R_15828008_SNP [dm3] 2R_19940503_SNP [dm6]	C	T	8.728e^-5	0.374	EXON CR43421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	12031521	2R_12031521_SNP [dm3] 2R_16144016_SNP [dm6]	C	A	8.780e^-5	0.374	INTRON Aats-cys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12096043	2R_12096043_SNP [dm3] 2R_16208538_SNP [dm6]	A	G	8.780e^-5	0.374	UPSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
2R	16443820	2R_16443820_SNP [dm3] 2R_20556315_SNP [dm6]	G	A	8.780e^-5	0.374	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19352584	2R_19352584_SNP [dm3] 2R_23465061_SNP [dm6]	G	A	8.780e^-5	0.374	INTRON CG43795
2R	19353820	2R_19353820_SNP [dm3] 2R_23466297_SNP [dm6]	G	A	8.780e^-5	0.374	INTRON CG43795
2R	19358066	2R_19358066_SNP [dm3] 2R_23470543_SNP [dm6]	A	G	8.780e^-5	0.374	SYNONYMOUS_CODING Or59b INTRON CG43795
3L	13316181	3L_13316181_SNP [dm3] 3L_13323081_SNP [dm6]	T	A	8.780e^-5	0.374	INTERGENIC
3L	13316182	3L_13316182_SNP [dm3] 3L_13323082_SNP [dm6]	A	G	8.780e^-5	0.374	INTERGENIC
3L	13316209	3L_13316209_SNP [dm3] 3L_13323109_SNP [dm6]	T	C	8.780e^-5	0.374	INTERGENIC
3L	13316600	3L_13316600_SNP [dm3] 3L_13323500_SNP [dm6]	C	T	8.780e^-5	0.374	DOWNSTREAM CR44558 INTERGENIC
3L	9300364	3L_9300364_SNP [dm3] 3L_9307264_SNP [dm6]	C	A	8.780e^-5	0.374	INTERGENIC
3R	1767569	3R_1767569_DEL [dm3] 3R_5941847_DEL [dm6]	GGGG	TT	8.780e^-5	0.374	INTRON CG34113
3R	1767605	3R_1767605_SNP [dm3] 3R_5941883_SNP [dm6]	C	A	8.780e^-5	0.374	INTRON CG34113
3R	18653920	3R_18653920_SNP [dm3] 3R_22828198_SNP [dm6]	T	G	8.780e^-5	0.374	UPSTREAM CR44350 INTERGENIC
3R	18654450	3R_18654450_SNP [dm3] 3R_22828728_SNP [dm6]	T	A	8.780e^-5	0.374	INTERGENIC
3R	19763439	3R_19763439_SNP [dm3] 3R_23937717_SNP [dm6]	C	T	8.780e^-5	0.374	INTRON Gdh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23301649	3R_23301649_SNP [dm3] 3R_27475927_SNP [dm6]	A	C	8.780e^-5	0.374	INTERGENIC
3R	23301683	3R_23301683_SNP [dm3] 3R_27475961_SNP [dm6]	A	T	8.780e^-5	0.374	INTERGENIC
3R	24047379	3R_24047379_SNP [dm3] 3R_28221657_SNP [dm6]	T	A	8.780e^-5	0.374	INTRON CG34354
3R	24047404	3R_24047404_SNP [dm3] 3R_28221682_SNP [dm6]	A	C	8.780e^-5	0.374	INTRON CG34354
3R	24047429	3R_24047429_SNP [dm3] 3R_28221707_SNP [dm6]	A	T	8.780e^-5	0.374	INTRON CG34354
3R	24047497	3R_24047497_SNP [dm3] 3R_28221775_SNP [dm6]	C	G	8.780e^-5	0.374	INTRON CG34354
X	11105087	X_11105087_DEL [dm3] X_11211054_DEL [dm6]	CC	C	8.780e^-5	0.374	INTERGENIC
X	11107648	X_11107648_SNP [dm3] X_11213615_SNP [dm6]	A	C	8.780e^-5	0.374	INTERGENIC
X	8295892	X_8295892_SNP [dm3] X_8401859_SNP [dm6]	A	C	8.816e^-5	0.375	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo
3L	3692080	3L_3692080_SNP [dm3] 3L_3692080_SNP [dm6]	G	A	8.918e^-5	0.378	INTERGENIC
2L	4892227	2L_4892227_SNP [dm3] 2L_4892227_SNP [dm6]	A	G	8.979e^-5	0.379	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	9594207	X_9594207_SNP [dm3] X_9700174_SNP [dm6]	C	G	8.984e^-5	0.379	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17589038	2R_17589038_SNP [dm3] 2R_21701533_SNP [dm6]	A	T	8.992e^-5	0.379	START_GAINED HmgD UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	19353250	2R_19353250_SNP [dm3] 2R_23465727_SNP [dm6]	C	T	9.102e^-5	0.382	INTRON CG43795
3L	1899188	3L_1899188_SNP [dm3] 3L_1899188_SNP [dm6]	C	G	9.118e^-5	0.382	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	6459236	2R_6459236_SNP [dm3] 2R_10571731_SNP [dm6]	A	G	9.232e^-5	0.384	INTRON psq
2R	6459242	2R_6459242_SNP [dm3] 2R_10571737_SNP [dm6]	T	A	9.232e^-5	0.384	INTRON psq
2R	6459261	2R_6459261_SNP [dm3] 2R_10571756_SNP [dm6]	G	A	9.232e^-5	0.384	INTRON psq
2L	4884828	2L_4884828_SNP [dm3] 2L_4884828_SNP [dm6]	T	C	9.285e^-5	0.385	SYNONYMOUS_CODING CG3008	TF binding site mE1_TFBS_sens
2L	4884831	2L_4884831_SNP [dm3] 2L_4884831_SNP [dm6]	C	T	9.285e^-5	0.385	SYNONYMOUS_CODING CG3008	TF binding site mE1_TFBS_sens
3L	12318111	3L_12318111_SNP [dm3] 3L_12325011_SNP [dm6]	A	G	9.336e^-5	0.386	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1026009	2L_1026009_SNP [dm3] 2L_1026009_SNP [dm6]	A	G	9.403e^-5	0.388	DOWNSTREAM CG4375 INTRON IA-2
2R	9779721	2R_9779721_SNP [dm3] 2R_13892216_SNP [dm6]	A	G	9.478e^-5	0.388	SYNONYMOUS_CODING shot INTRON shot
2R	8544139	2R_8544139_SNP [dm3] 2R_12656634_SNP [dm6]	C	T	9.518e^-5	0.388	DOWNSTREAM ZnT49B INTRON CG8646
X	14802538	X_14802538_SNP [dm3] X_14908505_SNP [dm6]	G	T	9.522e^-5	0.388	INTRON Flo2 & 1 other
X	1649460	X_1649460_SNP [dm3] X_1755427_SNP [dm6]	T	G	9.535e^-5	0.388	INTERGENIC
X	19001085	X_19001085_SNP [dm3] X_19107052_SNP [dm6]	A	C	9.558e^-5	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19001157	X_19001157_SNP [dm3] X_19107124_SNP [dm6]	C	A	9.558e^-5	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11943129	2L_11943129_SNP [dm3] 2L_11943129_SNP [dm6]	G	T	9.563e^-5	0.388	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
X	5404054	X_5404054_SNP [dm3] X_5510021_SNP [dm6]	A	C	9.569e^-5	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1769698	3R_1769698_SNP [dm3] 3R_5943976_SNP [dm6]	C	T	9.607e^-5	0.389	INTRON CG34113
X	9101066	X_9101066_SNP [dm3] X_9207033_SNP [dm6]	A	G	9.669e^-5	0.39	SYNONYMOUS_CODING CG12119
X	9101096	X_9101096_SNP [dm3] X_9207063_SNP [dm6]	A	G	9.669e^-5	0.39	SYNONYMOUS_CODING CG12119
2L	4520890	2L_4520890_SNP [dm3] 2L_4520890_SNP [dm6]	T	A	9.741e^-5	0.391	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10347806	2L_10347806_SNP [dm3] 2L_10347806_SNP [dm6]	T	C	9.753e^-5	0.391	DOWNSTREAM CG34367 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3440277	2L_3440277_SNP [dm3] 2L_3440277_SNP [dm6]	C	T	9.774e^-5	0.391	INTERGENIC
3L	7247528	3L_7247528_SNP [dm3] 3L_7254428_SNP [dm6]	A	T	9.811e^-5	0.391	INTRON CG14830
3R	4905947	3R_4905947_SNP [dm3] 3R_9080225_SNP [dm6]	G	A	9.819e^-5	0.391	INTRON pum
2L	8389718	2L_8389718_SNP [dm3] 2L_8389718_SNP [dm6]	C	G	9.850e^-5	0.392	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
X	10920328	X_10920328_SNP [dm3] X_11026295_SNP [dm6]	T	C	9.880e^-5	0.392	INTRON CG42339
2L	15904284	2L_15904284_DEL [dm3] 2L_15904284_DEL [dm6]	CCAC	C	9.957e^-5	0.393	DOWNSTREAM beat-Ib INTERGENIC
2L	15904875	2L_15904875_DEL [dm3] 2L_15904875_DEL [dm6]	ACA	A	9.957e^-5	0.393	DOWNSTREAM beat-Ib INTERGENIC
2L	15904900	2L_15904900_SNP [dm3] 2L_15904900_SNP [dm6]	C	T	9.957e^-5	0.393	DOWNSTREAM beat-Ib INTERGENIC
3L	18060651	3L_18060651_SNP [dm3] 3L_18067551_SNP [dm6]	G	C	1.013e^-4	0.398	INTERGENIC
X	14805169	X_14805169_SNP [dm3] X_14911136_SNP [dm6]	A	T	1.025e^-4	0.401	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2R	6459142	2R_6459142_DEL [dm3] 2R_10571637_DEL [dm6]	AGATATATATA...	A	1.026e^-4	0.401	INTRON psq
2R	9787243	2R_9787243_SNP [dm3] 2R_13899738_SNP [dm6]	T	G	1.027e^-4	0.401	INTRON shot	TF binding site mE1_TFBS_cad
3R	24874224	3R_24874224_SNP [dm3] 3R_29048502_SNP [dm6]	C	A	1.027e^-4	0.401	UTR_3_PRIME Pkc98E UPSTREAM CG11837
3R	2220914	3R_2220914_SNP [dm3] 3R_6395192_SNP [dm6]	C	T	1.034e^-4	0.402	INTRON Dmtn
3R	25964722	3R_25964722_SNP [dm3] 3R_30139000_SNP [dm6]	G	A	1.043e^-4	0.405	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	27530833	3R_27530833_DEL [dm3] 3R_31705111_DEL [dm6]	GCCTTTCAG	G	1.051e^-4	0.406	EXON CR45052	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	18786105	2L_18786105_SNP [dm3] 2L_18786105_SNP [dm6]	G	A	1.051e^-4	0.406	INTRON ham
X	555686	X_555686_SNP [dm3] X_661653_SNP [dm6]	C	T	1.054e^-4	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5116202	2L_5116202_SNP [dm3] 2L_5116202_SNP [dm6]	A	G	1.055e^-4	0.406	INTRON Msp300
3L	1899129	3L_1899129_DEL [dm3] 3L_1899129_DEL [dm6]	TCAGTAATAT	T	1.057e^-4	0.406	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	7254694	2L_7254694_SNP [dm3] 2L_7254694_SNP [dm6]	A	T	1.062e^-4	0.406	DOWNSTREAM Wnt4 INTERGENIC
2L	7254698	2L_7254698_SNP [dm3] 2L_7254698_SNP [dm6]	C	T	1.062e^-4	0.406	DOWNSTREAM Wnt4 INTERGENIC
3R	13334815	3R_13334815_SNP [dm3] 3R_17509093_SNP [dm6]	G	C	1.071e^-4	0.408	INTERGENIC
3R	20852907	3R_20852907_SNP [dm3] 3R_25027185_SNP [dm6]	G	A	1.072e^-4	0.408	SYNONYMOUS_CODING Hr96
2L	16994039	2L_16994039_SNP [dm3] 2L_16994039_SNP [dm6]	A	G	1.073e^-4	0.408	DOWNSTREAM beat-IIIb INTERGENIC
3L	10356410	3L_10356410_SNP [dm3] 3L_10363310_SNP [dm6]	C	T	1.075e^-4	0.408	EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7827186	3R_7827186_SNP [dm3] 3R_12001464_SNP [dm6]	G	A	1.081e^-4	0.409	INTRON Tk & 1 other
2L	10057157	2L_10057157_SNP [dm3] 2L_10057157_SNP [dm6]	C	A	1.083e^-4	0.409	UTR_5_PRIME Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6437656	X_6437656_SNP [dm3] X_6543623_SNP [dm6]	T	C	1.089e^-4	0.41	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2L	7665306	2L_7665306_SNP [dm3] 2L_7665306_SNP [dm6]	T	C	1.093e^-4	0.41	UPSTREAM Myo28B1 INTRON Slob
3R	25812955	3R_25812955_DEL [dm3] 3R_29987233_DEL [dm6]	TC	T	1.094e^-4	0.41	INTRON CG7896	TF binding site BDTNP1_TFBS_twi
X	11582867	X_11582867_SNP [dm3] X_11688834_SNP [dm6]	T	C	1.096e^-4	0.41	INTRON bif
3R	10278787	3R_10278787_DEL [dm3] 3R_14453065_DEL [dm6]	CAGC	C	1.099e^-4	0.41	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10895700	3R_10895700_SNP [dm3] 3R_15069978_SNP [dm6]	T	G	1.099e^-4	0.41	INTRON dpr9
3R	2842568	3R_2842568_SNP [dm3] 3R_7016846_SNP [dm6]	A	T	1.108e^-4	0.411	INTERGENIC
X	3437163	X_3437163_SNP [dm3] X_3543130_SNP [dm6]	T	A	1.109e^-4	0.411	INTRON CG32791
3R	16224583	3R_16224583_SNP [dm3] 3R_20398861_SNP [dm6]	A	G	1.112e^-4	0.411	INTRON Gfrl
2L	8232944	2L_8232944_SNP [dm3] 2L_8232944_SNP [dm6]	A	C	1.130e^-4	0.411	INTRON Pvr
2L	16007792	2L_16007792_SNP [dm3] 2L_16007792_SNP [dm6]	G	A	1.133e^-4	0.411	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8100855	3R_8100855_SNP [dm3] 3R_12275133_SNP [dm6]	C	T	1.133e^-4	0.411	INTRON svp	TF binding site mE1_TFBS_Kr
2L	9581466	2L_9581466_SNP [dm3] 2L_9581466_SNP [dm6]	A	T	1.136e^-4	0.411	NON_SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18522200	2R_18522200_SNP [dm3] 2R_22634695_SNP [dm6]	T	C	1.137e^-4	0.411	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18522377	2R_18522377_SNP [dm3] 2R_22634872_SNP [dm6]	C	T	1.137e^-4	0.411	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	4709134	3R_4709134_SNP [dm3] 3R_8883412_SNP [dm6]	A	G	1.139e^-4	0.411	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	10830109	X_10830109_SNP [dm3] X_10936076_SNP [dm6]	T	A	1.139e^-4	0.411	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833220	X_10833220_SNP [dm3] X_10939187_SNP [dm6]	G	T	1.139e^-4	0.411	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26200434	3R_26200434_SNP [dm3] 3R_30374712_SNP [dm6]	T	C	1.140e^-4	0.411	INTERGENIC
2L	663645	2L_663645_SNP [dm3] 2L_663645_SNP [dm6]	G	T	1.141e^-4	0.411	INTRON ds
X	7613230	X_7613230_SNP [dm3] X_7719197_SNP [dm6]	C	G	1.148e^-4	0.411	INTERGENIC
X	1942085	X_1942085_SNP [dm3] X_2048052_SNP [dm6]	C	G	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942087	X_1942087_SNP [dm3] X_2048054_SNP [dm6]	A	G	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942088	X_1942088_SNP [dm3] X_2048055_SNP [dm6]	C	G	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942090	X_1942090_DEL [dm3] X_2048057_DEL [dm6]	TA	T	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942094	X_1942094_SNP [dm3] X_2048061_SNP [dm6]	T	C	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942097	X_1942097_SNP [dm3] X_2048064_SNP [dm6]	T	A	1.148e^-4	0.411	INTRON CG4313 & 1 other
X	1942100	X_1942100_MNP [dm3] X_2048067_MNP [dm6]	CTACAT	TCTTGA	1.148e^-4	0.411	INTRON CG4313 & 1 other
2L	1118823	2L_1118823_SNP [dm3] 2L_1118823_SNP [dm6]	G	C	1.152e^-4	0.411	UTR_5_PRIME Pino INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	1093332	2L_1093332_SNP [dm3] 2L_1093332_SNP [dm6]	T	C	1.164e^-4	0.414	INTRON CG4629
2L	19651271	2L_19651271_SNP [dm3] 2L_19651271_SNP [dm6]	C	T	1.166e^-4	0.414	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	16841887	2R_16841887_SNP [dm3] 2R_20954382_SNP [dm6]	G	T	1.167e^-4	0.414	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19763421	3R_19763421_SNP [dm3] 3R_23937699_SNP [dm6]	A	G	1.175e^-4	0.416	INTRON Gdh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8894666	3R_8894666_SNP [dm3] 3R_13068944_SNP [dm6]	G	C	1.176e^-4	0.416	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18593317	3R_18593317_SNP [dm3] 3R_22767595_SNP [dm6]	A	T	1.186e^-4	0.416	DOWNSTREAM CG43091 INTRON Usp12-46 & 2 others
2R	7703222	2R_7703222_SNP [dm3] 2R_11815717_SNP [dm6]	A	T	1.187e^-4	0.416	INTERGENIC
2L	13701269	2L_13701269_SNP [dm3] 2L_13701269_SNP [dm6]	A	G	1.190e^-4	0.416	INTRON CG31814
X	19068231	X_19068231_SNP [dm3] X_19174198_SNP [dm6]	T	C	1.198e^-4	0.416	INTRON pncr004:X
X	9233891	X_9233891_DEL [dm3] X_9339858_DEL [dm6]	CC	C	1.199e^-4	0.416	INTRON CG34449
2R	14976580	2R_14976580_SNP [dm3] 2R_19089075_SNP [dm6]	T	C	1.202e^-4	0.416	INTRON 5-HT1A
2L	12729717	2L_12729717_SNP [dm3] 2L_12729717_SNP [dm6]	G	A	1.211e^-4	0.416	INTRON MRP	TF binding site BDTNP1_TFBS_twi
2L	12729722	2L_12729722_SNP [dm3] 2L_12729722_SNP [dm6]	A	G	1.211e^-4	0.416	INTRON MRP	TF binding site BDTNP1_TFBS_twi
3R	15447318	3R_15447318_SNP [dm3] 3R_19621596_SNP [dm6]	C	T	1.211e^-4	0.416	UPSTREAM CG6231 INTRON CG6231
3R	21411101	3R_21411101_SNP [dm3] 3R_25585379_SNP [dm6]	T	C	1.218e^-4	0.416	INTRON msi
3L	12245919	3L_12245919_SNP [dm3] 3L_12252819_SNP [dm6]	T	G	1.219e^-4	0.416	INTRON app
3L	12245922	3L_12245922_SNP [dm3] 3L_12252822_SNP [dm6]	T	A	1.219e^-4	0.416	INTRON app
3L	12245949	3L_12245949_SNP [dm3] 3L_12252849_SNP [dm6]	A	C	1.219e^-4	0.416	INTRON app
3L	12245981	3L_12245981_SNP [dm3] 3L_12252881_SNP [dm6]	T	A	1.219e^-4	0.416	INTRON app
3L	12245984	3L_12245984_DEL [dm3] 3L_12252884_DEL [dm6]	TCACATTTCTTGGACCCAT...	T	1.219e^-4	0.416	INTRON app
2R	1630849	2R_1630849_SNP [dm3] 2R_5743344_SNP [dm6]	G	A	1.222e^-4	0.416	INTERGENIC	regulatory region REDfly_CRMs
2R	10979978	2R_10979978_SNP [dm3] 2R_15092473_SNP [dm6]	G	A	1.223e^-4	0.416	DOWNSTREAM CR44457 INTERGENIC
2L	14980379	2L_14980379_SNP [dm3] 2L_14980379_SNP [dm6]	A	G	1.231e^-4	0.416	INTRON mol
2L	14981517	2L_14981517_SNP [dm3] 2L_14981517_SNP [dm6]	C	T	1.231e^-4	0.416	INTRON mol
2R	9823864	2R_9823864_SNP [dm3] 2R_13936359_SNP [dm6]	C	T	1.232e^-4	0.416	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11434108	3L_11434108_SNP [dm3] 3L_11441008_SNP [dm6]	C	T	1.232e^-4	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8389189	2L_8389189_SNP [dm3] 2L_8389189_SNP [dm6]	C	G	1.232e^-4	0.416	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
3R	25826081	3R_25826081_SNP [dm3] 3R_30000359_SNP [dm6]	G	A	1.240e^-4	0.416	UTR_3_PRIME CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25826105	3R_25826105_SNP [dm3] 3R_30000383_SNP [dm6]	T	C	1.240e^-4	0.416	UTR_3_PRIME CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25826191	3R_25826191_SNP [dm3] 3R_30000469_SNP [dm6]	A	C	1.240e^-4	0.416	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25827877	3R_25827877_SNP [dm3] 3R_30002155_SNP [dm6]	C	T	1.240e^-4	0.416	SYNONYMOUS_CODING Tace UTR_3_PRIME Tace	TF binding site mE1_TFBS_chinmo
2L	1354479	2L_1354479_SNP [dm3] 2L_1354479_SNP [dm6]	G	A	1.245e^-4	0.416	NON_SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
X	7615492	X_7615492_SNP [dm3] X_7721459_SNP [dm6]	A	C	1.251e^-4	0.416	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19233035	2L_19233035_SNP [dm3] 2L_19233035_SNP [dm6]	A	T	1.257e^-4	0.416	INTERGENIC
2L	19233046	2L_19233046_SNP [dm3] 2L_19233046_SNP [dm6]	T	A	1.257e^-4	0.416	INTERGENIC
3L	18050043	3L_18050043_SNP [dm3] 3L_18056943_SNP [dm6]	C	A	1.258e^-4	0.416	INTRON Eip75B
2R	11343848	2R_11343848_SNP [dm3] 2R_15456343_SNP [dm6]	T	C	1.261e^-4	0.416	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13529207	2R_13529207_SNP [dm3] 2R_17641702_SNP [dm6]	C	T	1.262e^-4	0.416	INTERGENIC
3R	9780119	3R_9780119_SNP [dm3] 3R_13954397_SNP [dm6]	A	G	1.262e^-4	0.416	INTERGENIC
3R	9780121	3R_9780121_SNP [dm3] 3R_13954399_SNP [dm6]	A	T	1.262e^-4	0.416	INTERGENIC
3R	9780562	3R_9780562_SNP [dm3] 3R_13954840_SNP [dm6]	T	C	1.262e^-4	0.416	INTERGENIC
2R	7721428	2R_7721428_SNP [dm3] 2R_11833923_SNP [dm6]	C	A	1.264e^-4	0.416	INTRON Sobp
X	19435273	X_19435273_SNP [dm3] X_19541240_SNP [dm6]	A	T	1.265e^-4	0.416	INTRON CG32532
2R	15342576	2R_15342576_SNP [dm3] 2R_19455071_SNP [dm6]	G	A	1.268e^-4	0.416	SYNONYMOUS_CODING CG7744	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15069233	3R_15069233_SNP [dm3] 3R_19243511_SNP [dm6]	G	T	1.268e^-4	0.416	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15668541	3L_15668541_SNP [dm3] 3L_15675441_SNP [dm6]	C	T	1.269e^-4	0.416	INTERGENIC	silencer mE1_HDAC_PRE
2L	1190809	2L_1190809_SNP [dm3] 2L_1190809_SNP [dm6]	G	A	1.275e^-4	0.416	INTRON CG5001
3R	8129026	3R_8129026_SNP [dm3] 3R_12303304_SNP [dm6]	C	A	1.277e^-4	0.416	DOWNSTREAM svp INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8179246	2L_8179246_SNP [dm3] 2L_8179246_SNP [dm6]	C	T	1.278e^-4	0.416	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1032653	2L_1032653_SNP [dm3] 2L_1032653_SNP [dm6]	T	A	1.279e^-4	0.416	INTRON IA-2
3R	15819865	3R_15819865_SNP [dm3] 3R_19994143_SNP [dm6]	G	A	1.280e^-4	0.416	INTRON Hs6st
3L	22651456	3L_22651456_SNP [dm3] 3L_22658356_SNP [dm6]	G	A	1.284e^-4	0.416	INTERGENIC
X	9124203	X_9124203_SNP [dm3] X_9230170_SNP [dm6]	A	C	1.286e^-4	0.416	INTRON CG12121
2L	7254620	2L_7254620_SNP [dm3] 2L_7254620_SNP [dm6]	C	T	1.289e^-4	0.417	DOWNSTREAM Wnt4 INTERGENIC
2R	20149543	2R_20149543_SNP [dm3] 2R_24262020_SNP [dm6]	A	G	1.297e^-4	0.418	SYNONYMOUS_CODING CG3376	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18841918	3R_18841918_SNP [dm3] 3R_23016196_SNP [dm6]	T	C	1.300e^-4	0.418	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11846389	X_11846389_SNP [dm3] X_11952356_SNP [dm6]	T	C	1.301e^-4	0.418	INTRON cac
3R	18654429	3R_18654429_SNP [dm3] 3R_22828707_SNP [dm6]	A	G	1.305e^-4	0.419	INTERGENIC
X	2073081	X_2073081_DEL [dm3] X_2179048_DEL [dm6]	GCTA	G	1.308e^-4	0.419	UTR_5_PRIME Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10859334	2R_10859334_SNP [dm3] 2R_14971829_SNP [dm6]	G	T	1.317e^-4	0.419	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9641158	3L_9641158_SNP [dm3] 3L_9648058_SNP [dm6]	G	C	1.325e^-4	0.419	INTRON fry & 1 other
X	14800869	X_14800869_SNP [dm3] X_14906836_SNP [dm6]	C	A	1.325e^-4	0.419	SYNONYMOUS_CODING CG9509 INTRON Flo2
X	14801207	X_14801207_SNP [dm3] X_14907174_SNP [dm6]	G	A	1.325e^-4	0.419	SYNONYMOUS_CODING CG9509 INTRON Flo2
X	14802528	X_14802528_SNP [dm3] X_14908495_SNP [dm6]	T	A	1.325e^-4	0.419	INTRON Flo2 & 1 other
X	6766712	X_6766712_SNP [dm3] X_6872679_SNP [dm6]	C	T	1.327e^-4	0.419	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19673275	3R_19673275_SNP [dm3] 3R_23847553_SNP [dm6]	G	T	1.327e^-4	0.419	SPLICE_SITE_REGION CG34355 SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3878590	2L_3878590_SNP [dm3] 2L_3878590_SNP [dm6]	C	T	1.329e^-4	0.419	INTRON capu
X	11186504	X_11186504_SNP [dm3] X_11292471_SNP [dm6]	C	G	1.330e^-4	0.419	INTRON CG44422
3L	7162406	3L_7162406_SNP [dm3] 3L_7169306_SNP [dm6]	G	T	1.332e^-4	0.419	INTRON Dscam2	TF binding site mE1_TFBS_HSA
3R	23953504	3R_23953504_SNP [dm3] 3R_28127782_SNP [dm6]	G	A	1.334e^-4	0.419	INTERGENIC
3R	9489241	3R_9489241_SNP [dm3] 3R_13663519_SNP [dm6]	G	T	1.345e^-4	0.422	UTR_3_PRIME B52 INTRON B52
2R	10942081	2R_10942081_SNP [dm3] 2R_15054576_SNP [dm6]	A	G	1.348e^-4	0.422	DOWNSTREAM CG33467 INTERGENIC
2R	9779724	2R_9779724_SNP [dm3] 2R_13892219_SNP [dm6]	G	A	1.349e^-4	0.422	SYNONYMOUS_CODING shot INTRON shot
2L	9553799	2L_9553799_SNP [dm3] 2L_9553799_SNP [dm6]	A	T	1.365e^-4	0.426	SPLICE_SITE_REGION jp INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9779733	2R_9779733_SNP [dm3] 2R_13892228_SNP [dm6]	A	G	1.371e^-4	0.427	SYNONYMOUS_CODING shot INTRON shot
3R	23953493	3R_23953493_SNP [dm3] 3R_28127771_SNP [dm6]	G	A	1.377e^-4	0.428	INTERGENIC
2R	7278242	2R_7278242_SNP [dm3] 2R_11390737_SNP [dm6]	T	C	1.389e^-4	0.428	INTRON sprt
2R	7278266	2R_7278266_SNP [dm3] 2R_11390761_SNP [dm6]	C	A	1.389e^-4	0.428	INTRON sprt
3R	2442027	3R_2442027_SNP [dm3] 3R_6616305_SNP [dm6]	A	G	1.389e^-4	0.428	INTERGENIC
3R	2442099	3R_2442099_SNP [dm3] 3R_6616377_SNP [dm6]	A	G	1.389e^-4	0.428	INTERGENIC
3R	2689169	3R_2689169_SNP [dm3] 3R_6863447_SNP [dm6]	T	A	1.389e^-4	0.428	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2698655	3R_2698655_SNP [dm3] 3R_6872933_SNP [dm6]	G	A	1.389e^-4	0.428	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	8885957	3R_8885957_SNP [dm3] 3R_13060235_SNP [dm6]	C	T	1.392e^-4	0.428	INTRON sim	TF binding site BDTNP1_TFBS_prd
3R	7755805	3R_7755805_SNP [dm3] 3R_11930083_SNP [dm6]	A	G	1.397e^-4	0.428	INTRON Cad87A
2L	5116537	2L_5116537_SNP [dm3] 2L_5116537_SNP [dm6]	T	A	1.397e^-4	0.428	INTRON Msp300
3R	24697877	3R_24697877_SNP [dm3] 3R_28872155_SNP [dm6]	G	A	1.407e^-4	0.43	SYNONYMOUS_CODING CG33203 UPSTREAM CG14529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18244018	3R_18244018_SNP [dm3] 3R_22418296_SNP [dm6]	T	C	1.414e^-4	0.432	SYNONYMOUS_CODING lqfR DOWNSTREAM lqfR & 1 other
2L	19259327	2L_19259327_SNP [dm3] 2L_19259327_SNP [dm6]	G	A	1.420e^-4	0.433	DOWNSTREAM CG31797 INTERGENIC
3R	23038455	3R_23038455_SNP [dm3] 3R_27212733_SNP [dm6]	T	C	1.423e^-4	0.433	INTERGENIC
3R	25808919	3R_25808919_SNP [dm3] 3R_29983197_SNP [dm6]	T	A	1.424e^-4	0.433	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17923241	X_17923241_DEL [dm3] X_18029208_DEL [dm6]	AAAACGGAGGAAAGATGTGC...	A	1.427e^-4	0.433	DOWNSTREAM CG6867 INTRON Sh
3R	27191813	3R_27191813_SNP [dm3] 3R_31366091_SNP [dm6]	T	G	1.438e^-4	0.435	INTRON CG34347
2R	18025014	2R_18025014_SNP [dm3] 2R_22137509_SNP [dm6]	A	G	1.441e^-4	0.435	UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run mE1_TFBS_Trl
2L	1201070	2L_1201070_SNP [dm3] 2L_1201070_SNP [dm6]	G	C	1.445e^-4	0.435	NON_SYNONYMOUS_CODING CG5011 DOWNSTREAM CG43349	TF binding site mE1_TFBS_cad
2R	9647005	2R_9647005_SNP [dm3] 2R_13759500_SNP [dm6]	T	C	1.446e^-4	0.435	DOWNSTREAM CG6280 INTERGENIC
2R	19503681	2R_19503681_INS [dm3] 2R_23616158_INS [dm6]	A	ATTA	1.447e^-4	0.435	INTRON CG17664
2L	7456469	2L_7456469_SNP [dm3] 2L_7456469_SNP [dm6]	G	A	1.451e^-4	0.436	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10850079	3R_10850079_SNP [dm3] 3R_15024357_SNP [dm6]	G	C	1.455e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19948652	3R_19948652_SNP [dm3] 3R_24122930_SNP [dm6]	C	T	1.457e^-4	0.436	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2R	12701166	2R_12701166_SNP [dm3] 2R_16813661_SNP [dm6]	G	A	1.460e^-4	0.437	DOWNSTREAM CR44379 & 1 other INTERGENIC
3R	25814193	3R_25814193_SNP [dm3] 3R_29988471_SNP [dm6]	A	C	1.465e^-4	0.437	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	14635095	X_14635095_SNP [dm3] X_14741062_SNP [dm6]	A	T	1.467e^-4	0.437	INTRON NetB	TF binding site BDTNP1_TFBS_twi
X	14808536	X_14808536_SNP [dm3] X_14914503_SNP [dm6]	T	G	1.480e^-4	0.44	UPSTREAM CG12398 INTRON Flo2
3R	12965197	3R_12965197_SNP [dm3] 3R_17139475_SNP [dm6]	G	A	1.483e^-4	0.44	SYNONYMOUS_CODING CG5265 DOWNSTREAM CG5255
3L	1199400	3L_1199400_SNP [dm3] 3L_1199400_SNP [dm6]	G	A	1.485e^-4	0.44	DOWNSTREAM Aplip1 INTERGENIC
X	7748543	X_7748543_SNP [dm3] X_7854510_SNP [dm6]	G	A	1.487e^-4	0.44	UPSTREAM CG10920 INTERGENIC
2R	11043889	2R_11043889_SNP [dm3] 2R_15156384_SNP [dm6]	A	G	1.495e^-4	0.441	INTRON igl
3R	16638149	3R_16638149_SNP [dm3] 3R_20812427_SNP [dm6]	G	C	1.496e^-4	0.441	NON_SYNONYMOUS_CODING Fancd2
3R	16638154	3R_16638154_SNP [dm3] 3R_20812432_SNP [dm6]	G	A	1.496e^-4	0.441	SYNONYMOUS_CODING Fancd2
3R	24420892	3R_24420892_SNP [dm3] 3R_28595170_SNP [dm6]	G	A	1.498e^-4	0.441	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12263851	3L_12263851_SNP [dm3] 3L_12270751_SNP [dm6]	A	G	1.508e^-4	0.443	SYNONYMOUS_CODING Pbgs DOWNSTREAM CG32100 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11567681	3L_11567681_SNP [dm3] 3L_11574581_SNP [dm6]	G	A	1.515e^-4	0.443	SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33489
2L	8910734	2L_8910734_SNP [dm3] 2L_8910734_SNP [dm6]	T	C	1.521e^-4	0.443	INTRON CG34398
3R	26200644	3R_26200644_SNP [dm3] 3R_30374922_SNP [dm6]	G	A	1.522e^-4	0.443	INTERGENIC
3L	11085305	3L_11085305_SNP [dm3] 3L_11092205_SNP [dm6]	C	A	1.528e^-4	0.443	UPSTREAM JIL-1 INTRON JIL-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9665553	3R_9665553_SNP [dm3] 3R_13839831_SNP [dm6]	A	C	1.531e^-4	0.443	START_GAINED CG31495 UTR_5_PRIME CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2890787	3R_2890787_SNP [dm3] 3R_7065065_SNP [dm6]	T	C	1.539e^-4	0.443	SYNONYMOUS_CODING CG1105 DOWNSTREAM CG1988	TF binding site mE1_TFBS_cad
X	10833858	X_10833858_DEL [dm3] X_10939825_DEL [dm6]	AA	A	1.554e^-4	0.443	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13803258	2L_13803258_SNP [dm3] 2L_13803258_SNP [dm6]	A	G	1.564e^-4	0.443	UPSTREAM CAH1 INTERGENIC
3L	12248341	3L_12248341_SNP [dm3] 3L_12255241_SNP [dm6]	C	A	1.569e^-4	0.443	INTRON app	TF binding site mE1_TFBS_cad
3R	8139050	3R_8139050_SNP [dm3] 3R_12313328_SNP [dm6]	A	T	1.580e^-4	0.443	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13173674	3L_13173674_SNP [dm3] 3L_13180574_SNP [dm6]	T	G	1.582e^-4	0.443	INTERGENIC
3L	12245941	3L_12245941_SNP [dm3] 3L_12252841_SNP [dm6]	A	T	1.591e^-4	0.443	INTRON app
2L	6792468	2L_6792468_SNP [dm3] 2L_6792468_SNP [dm6]	C	A	1.593e^-4	0.443	INTRON nrv2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8435438	3R_8435438_SNP [dm3] 3R_12609716_SNP [dm6]	A	T	1.597e^-4	0.443	INTERGENIC
3L	3692350	3L_3692350_SNP [dm3] 3L_3692350_SNP [dm6]	C	A	1.599e^-4	0.443	INTERGENIC
2L	5116133	2L_5116133_INS [dm3] 2L_5116133_INS [dm6]	A	ACCTGCTACA	1.602e^-4	0.443	INTRON Msp300
3R	19153673	3R_19153673_SNP [dm3] 3R_23327951_SNP [dm6]	A	T	1.606e^-4	0.443	INTRON pnt
2L	18396506	2L_18396506_SNP [dm3] 2L_18396506_SNP [dm6]	C	T	1.611e^-4	0.443	INTERGENIC
2L	13970162	2L_13970162_SNP [dm3] 2L_13970162_SNP [dm6]	A	G	1.615e^-4	0.443	UPSTREAM NimB5 & 1 other INTERGENIC
3R	13328009	3R_13328009_SNP [dm3] 3R_17502287_SNP [dm6]	A	G	1.619e^-4	0.443	INTRON Dscam3
2R	14276417	2R_14276417_SNP [dm3] 2R_18388912_SNP [dm6]	T	C	1.629e^-4	0.443	UPSTREAM CG16836 DOWNSTREAM IM3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25808916	3R_25808916_SNP [dm3] 3R_29983194_SNP [dm6]	G	T	1.631e^-4	0.443	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6433700	3L_6433700_SNP [dm3] 3L_6440600_SNP [dm6]	C	G	1.645e^-4	0.443	INTRON CG42747
X	8295649	X_8295649_SNP [dm3] X_8401616_SNP [dm6]	G	A	1.652e^-4	0.443	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10268685	3L_10268685_SNP [dm3] 3L_10275585_SNP [dm6]	A	G	1.653e^-4	0.443	DOWNSTREAM Or67d INTERGENIC
3R	26211088	3R_26211088_SNP [dm3] 3R_30385366_SNP [dm6]	A	T	1.661e^-4	0.443	DOWNSTREAM Fer1HCH INTERGENIC
2R	9779862	2R_9779862_SNP [dm3] 2R_13892357_SNP [dm6]	T	A	1.668e^-4	0.443	SYNONYMOUS_CODING shot INTRON shot
3L	13173686	3L_13173686_SNP [dm3] 3L_13180586_SNP [dm6]	A	C	1.669e^-4	0.443	INTERGENIC
3R	12640550	3R_12640550_SNP [dm3] 3R_16814828_SNP [dm6]	G	A	1.671e^-4	0.443	INTRON abd-A	regulatory region REDfly_CRMs
2L	12650178	2L_12650178_SNP [dm3] 2L_12650178_SNP [dm6]	T	C	1.676e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12650216	2L_12650216_SNP [dm3] 2L_12650216_SNP [dm6]	A	T	1.676e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8059700	3R_8059700_MNP [dm3] 3R_12233978_MNP [dm6]	ACC	GAT	1.690e^-4	0.443	DOWNSTREAM Cyp313a2 INTRON Cyp313a5
2L	15904429	2L_15904429_SNP [dm3] 2L_15904429_SNP [dm6]	T	A	1.691e^-4	0.443	DOWNSTREAM beat-Ib INTERGENIC
3R	13349487	3R_13349487_SNP [dm3] 3R_17523765_SNP [dm6]	T	G	1.706e^-4	0.443	INTERGENIC
3L	13173681	3L_13173681_SNP [dm3] 3L_13180581_SNP [dm6]	T	G	1.710e^-4	0.443	INTERGENIC
2L	14039694	2L_14039694_DEL [dm3] 2L_14039694_DEL [dm6]	TG	T	1.716e^-4	0.443	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	18782548	3R_18782548_SNP [dm3] 3R_22956826_SNP [dm6]	A	G	1.716e^-4	0.443	INTRON klg
3L	6223584	3L_6223584_SNP [dm3] 3L_6230484_SNP [dm6]	T	C	1.717e^-4	0.443	INTERGENIC
2L	15444211	2L_15444211_SNP [dm3] 2L_15444211_SNP [dm6]	C	T	1.722e^-4	0.443	INTERGENIC
2R	9660320	2R_9660320_SNP [dm3] 2R_13772815_SNP [dm6]	T	G	1.723e^-4	0.443	INTRON Cpr50Ca
3R	16904402	3R_16904402_SNP [dm3] 3R_21078680_SNP [dm6]	T	C	1.723e^-4	0.443	INTRON HHEX
3R	19701699	3R_19701699_SNP [dm3] 3R_23875977_SNP [dm6]	G	C	1.723e^-4	0.443	INTRON Pli
X	6113707	X_6113707_SNP [dm3] X_6219674_SNP [dm6]	A	T	1.728e^-4	0.443	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8269155	3L_8269155_SNP [dm3] 3L_8276055_SNP [dm6]	A	G	1.729e^-4	0.443	NON_SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_chinmo
2R	12020862	2R_12020862_SNP [dm3] 2R_16133357_SNP [dm6]	T	A	1.733e^-4	0.443	INTRON spin	TF binding site mE1_TFBS_cad
3L	3692411	3L_3692411_SNP [dm3] 3L_3692411_SNP [dm6]	G	A	1.735e^-4	0.443	INTERGENIC
X	16623871	X_16623871_SNP [dm3] X_16729838_SNP [dm6]	G	A	1.738e^-4	0.443	SYNONYMOUS_CODING CG9634
2L	8909933	2L_8909933_SNP [dm3] 2L_8909933_SNP [dm6]	G	T	1.739e^-4	0.443	INTRON CG34398
2L	8910304	2L_8910304_SNP [dm3] 2L_8910304_SNP [dm6]	G	C	1.739e^-4	0.443	INTRON CG34398
3L	12245973	3L_12245973_SNP [dm3] 3L_12252873_SNP [dm6]	T	C	1.739e^-4	0.443	INTRON app
2L	5891160	2L_5891160_SNP [dm3] 2L_5891160_SNP [dm6]	C	T	1.740e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24253120	3R_24253120_SNP [dm3] 3R_28427398_SNP [dm6]	T	G	1.743e^-4	0.443	INTRON beat-VI
X	19141206	X_19141206_SNP [dm3] X_19247173_SNP [dm6]	G	A	1.743e^-4	0.443	START_GAINED CG7992 UTR_5_PRIME CG7992	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20792707	3R_20792707_SNP [dm3] 3R_24966985_SNP [dm6]	G	A	1.745e^-4	0.443	INTERGENIC
3R	24096907	3R_24096907_SNP [dm3] 3R_28271185_SNP [dm6]	C	A	1.746e^-4	0.443	INTERGENIC
2R	20274226	2R_20274226_SNP [dm3] 2R_24386703_SNP [dm6]	T	C	1.747e^-4	0.443	INTRON mAChR-A
X	9630616	X_9630616_SNP [dm3] X_9736583_SNP [dm6]	G	A	1.750e^-4	0.443	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	1240823	2L_1240823_SNP [dm3] 2L_1240823_SNP [dm6]	C	T	1.752e^-4	0.443	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	4065385	2L_4065385_SNP [dm3] 2L_4065385_SNP [dm6]	G	T	1.753e^-4	0.443	INTRON ed
3R	18655565	3R_18655565_DEL [dm3] 3R_22829843_DEL [dm6]	TCACGCAAATTTAAATGAAA...	T	1.762e^-4	0.443	INTERGENIC
2L	13582047	2L_13582047_SNP [dm3] 2L_13582047_SNP [dm6]	G	T	1.763e^-4	0.443	UPSTREAM CR44973 INTRON kuz
3L	1364586	3L_1364586_SNP [dm3] 3L_1364586_SNP [dm6]	G	C	1.787e^-4	0.443	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3R	25826196	3R_25826196_SNP [dm3] 3R_30000474_SNP [dm6]	A	G	1.794e^-4	0.443	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25826185	3R_25826185_SNP [dm3] 3R_30000463_SNP [dm6]	T	G	1.800e^-4	0.443	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23921956	3R_23921956_SNP [dm3] 3R_28096234_SNP [dm6]	G	A	1.802e^-4	0.443	INTERGENIC
2L	11419599	2L_11419599_SNP [dm3] 2L_11419599_SNP [dm6]	A	C	1.808e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19310521	2L_19310521_SNP [dm3] 2L_19310521_SNP [dm6]	A	T	1.809e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19310525	2L_19310525_SNP [dm3] 2L_19310525_SNP [dm6]	C	T	1.809e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16637829	3R_16637829_SNP [dm3] 3R_20812107_SNP [dm6]	A	T	1.810e^-4	0.443	INTRON Fancd2
3L	6971370	3L_6971370_SNP [dm3] 3L_6978270_SNP [dm6]	T	A	1.812e^-4	0.443	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8930736	3L_8930736_DEL [dm3] 3L_8937636_DEL [dm6]	TT	T	1.818e^-4	0.443	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
3L	8829998	3L_8829998_SNP [dm3] 3L_8836898_SNP [dm6]	C	T	1.827e^-4	0.443	SYNONYMOUS_CODING CG32026 INTRON dally
3L	8836262	3L_8836262_SNP [dm3] 3L_8843162_SNP [dm6]	T	C	1.832e^-4	0.443	INTRON dally
2L	19944757	2L_19944757_SNP [dm3] 2L_19944757_SNP [dm6]	G	C	1.851e^-4	0.443	INTRON sick
2R	16827470	2R_16827470_SNP [dm3] 2R_20939965_SNP [dm6]	T	C	1.862e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11068931	X_11068931_SNP [dm3] X_11174898_SNP [dm6]	T	C	1.871e^-4	0.443	INTERGENIC
X	11588139	X_11588139_SNP [dm3] X_11694106_SNP [dm6]	C	G	1.872e^-4	0.443	UTR_3_PRIME bif	TF binding site BDTNP1_TFBS_dl
X	11588152	X_11588152_SNP [dm3] X_11694119_SNP [dm6]	A	T	1.872e^-4	0.443	UTR_3_PRIME bif	TF binding site BDTNP1_TFBS_dl
2R	13905668	2R_13905668_SNP [dm3] 2R_18018163_SNP [dm6]	T	A	1.881e^-4	0.443	UPSTREAM CG5084 INTERGENIC
X	1647793	X_1647793_SNP [dm3] X_1753760_SNP [dm6]	A	C	1.897e^-4	0.443	UTR_5_PRIME Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5404011	X_5404011_SNP [dm3] X_5509978_SNP [dm6]	A	C	1.899e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11042790	2L_11042790_SNP [dm3] 2L_11042790_SNP [dm6]	A	G	1.901e^-4	0.443	INTRON Samuel	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7794395	3R_7794395_SNP [dm3] 3R_11968673_SNP [dm6]	G	A	1.908e^-4	0.443	UPSTREAM CG12213 INTRON GC1	TF binding site mE1_TFBS_HSA
X	16652785	X_16652785_DEL [dm3] X_16758752_DEL [dm6]	TT	T	1.920e^-4	0.443	INTRON if
2L	15869702	2L_15869702_SNP [dm3] 2L_15869702_SNP [dm6]	A	G	1.924e^-4	0.443	INTERGENIC
X	14806257	X_14806257_SNP [dm3] X_14912224_SNP [dm6]	T	C	1.925e^-4	0.443	SYNONYMOUS_CODING CG12398 INTRON Flo2
2R	12804489	2R_12804489_SNP [dm3] 2R_16916984_SNP [dm6]	T	C	1.926e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	8378524	2L_8378524_SNP [dm3] 2L_8378524_SNP [dm6]	C	T	1.933e^-4	0.443	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13946865	2L_13946865_SNP [dm3] 2L_13946865_SNP [dm6]	T	C	1.940e^-4	0.443	INTRON Ance-3 & 1 other
3R	25855103	3R_25855103_SNP [dm3] 3R_30029381_SNP [dm6]	C	A	1.940e^-4	0.443	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10218402	3L_10218402_SNP [dm3] 3L_10225302_SNP [dm6]	G	T	1.945e^-4	0.443	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10218481	3L_10218481_SNP [dm3] 3L_10225381_SNP [dm6]	A	G	1.945e^-4	0.443	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4892318	2L_4892318_SNP [dm3] 2L_4892318_SNP [dm6]	C	A	1.946e^-4	0.443	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	16245985	3L_16245985_SNP [dm3] 3L_16252885_SNP [dm6]	G	T	1.947e^-4	0.443	UPSTREAM CG13055 INTERGENIC
3R	21411289	3R_21411289_SNP [dm3] 3R_25585567_SNP [dm6]	T	C	1.948e^-4	0.443	INTRON msi
3R	21411305	3R_21411305_SNP [dm3] 3R_25585583_SNP [dm6]	C	A	1.948e^-4	0.443	INTRON msi
X	6423638	X_6423638_SNP [dm3] X_6529605_SNP [dm6]	T	C	1.952e^-4	0.443	SYNONYMOUS_CODING Spat
2R	13333131	2R_13333131_SNP [dm3] 2R_17445626_SNP [dm6]	A	C	1.955e^-4	0.443	NON_SYNONYMOUS_CODING mthl4 UPSTREAM EDTP	TF binding site mE1_TFBS_bab1
3R	8872671	3R_8872671_SNP [dm3] 3R_13046949_SNP [dm6]	A	G	1.962e^-4	0.443	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	23963737	3R_23963737_INS [dm3] 3R_28138015_INS [dm6]	T	TTGCCAGCT	1.965e^-4	0.443	INTERGENIC
3R	25940691	3R_25940691_SNP [dm3] 3R_30114969_SNP [dm6]	C	T	1.965e^-4	0.443	INTRON sima
3R	25940703	3R_25940703_DEL [dm3] 3R_30114981_DEL [dm6]	TAGCCTTTATT...	T	1.965e^-4	0.443	INTRON sima
3L	1868880	3L_1868880_DEL [dm3] 3L_1868880_DEL [dm6]	TT	T	1.984e^-4	0.443	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	19317529	2L_19317529_SNP [dm3] 2L_19317529_SNP [dm6]	T	C	2.003e^-4	0.443	INTERGENIC
3R	25812498	3R_25812498_SNP [dm3] 3R_29986776_SNP [dm6]	A	G	2.004e^-4	0.443	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16564096	3R_16564096_SNP [dm3] 3R_20738374_SNP [dm6]	T	G	2.008e^-4	0.443	UTR_3_PRIME cdc2c INTRON CG17267
3L	1867869	3L_1867869_SNP [dm3] 3L_1867869_SNP [dm6]	C	A	2.008e^-4	0.443	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3R	13328995	3R_13328995_SNP [dm3] 3R_17503273_SNP [dm6]	G	C	2.012e^-4	0.443	INTRON Dscam3
3L	20753973	3L_20753973_SNP [dm3] 3L_20760873_SNP [dm6]	G	T	2.021e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	8433214	3R_8433214_INS [dm3] 3R_12607492_INS [dm6]	G	GTCCTG	2.028e^-4	0.443	INTERGENIC
3R	22277943	3R_22277943_SNP [dm3] 3R_26452221_SNP [dm6]	G	A	2.036e^-4	0.443	NON_SYNONYMOUS_CODING Hex-t2 UPSTREAM CG5447
3R	22277947	3R_22277947_SNP [dm3] 3R_26452225_SNP [dm6]	G	A	2.036e^-4	0.443	SYNONYMOUS_CODING Hex-t2 UPSTREAM CG5447
3R	13345019	3R_13345019_SNP [dm3] 3R_17519297_SNP [dm6]	A	G	2.049e^-4	0.443	UPSTREAM CR44349 INTERGENIC
3R	24718588	3R_24718588_SNP [dm3] 3R_28892866_SNP [dm6]	T	G	2.049e^-4	0.443	INTRON Doa
2L	19946309	2L_19946309_SNP [dm3] 2L_19946309_SNP [dm6]	G	A	2.050e^-4	0.443	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	5767145	2R_5767145_SNP [dm3] 2R_9879640_SNP [dm6]	T	G	2.053e^-4	0.443	SPLICE_SITE_REGION Sec24AB INTRON Sec24AB	TF binding site mE1_TFBS_cad
3L	13173682	3L_13173682_SNP [dm3] 3L_13180582_SNP [dm6]	T	G	2.064e^-4	0.443	INTERGENIC
3R	22683011	3R_22683011_SNP [dm3] 3R_26857289_SNP [dm6]	A	G	2.068e^-4	0.443	INTRON Lerp
3L	4311945	3L_4311945_SNP [dm3] 3L_4311945_SNP [dm6]	C	T	2.069e^-4	0.443	INTERGENIC
3L	13246421	3L_13246421_SNP [dm3] 3L_13253321_SNP [dm6]	C	T	2.071e^-4	0.443	INTRON caps	TF binding site mE1_TFBS_inv
3L	13246425	3L_13246425_SNP [dm3] 3L_13253325_SNP [dm6]	G	T	2.071e^-4	0.443	INTRON caps	TF binding site mE1_TFBS_inv
2R	10979968	2R_10979968_SNP [dm3] 2R_15092463_SNP [dm6]	G	A	2.081e^-4	0.443	DOWNSTREAM CR44457 INTERGENIC
2R	4935691	2R_4935691_SNP [dm3] 2R_9048186_SNP [dm6]	A	G	2.087e^-4	0.443	SYNONYMOUS_CODING CG13743 INTRON CG13743
2R	1709634	2R_1709634_SNP [dm3] 2R_5822129_SNP [dm6]	A	G	2.096e^-4	0.443	INTRON dpr12
3R	7741925	3R_7741925_SNP [dm3] 3R_11916203_SNP [dm6]	A	T	2.101e^-4	0.443	INTRON Cad87A
3L	7393122	3L_7393122_SNP [dm3] 3L_7400022_SNP [dm6]	A	G	2.104e^-4	0.443	UPSTREAM CG18417 DOWNSTREAM CG8562 INTERGENIC
X	14544140	X_14544140_SNP [dm3] X_14650107_SNP [dm6]	C	T	2.110e^-4	0.443	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6438836	X_6438836_SNP [dm3] X_6544803_SNP [dm6]	C	G	2.111e^-4	0.443	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
X	19725775	X_19725775_SNP [dm3] X_19831742_SNP [dm6]	A	G	2.127e^-4	0.443	UTR_3_PRIME pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16638042	3R_16638042_SNP [dm3] 3R_20812320_SNP [dm6]	C	T	2.136e^-4	0.443	NON_SYNONYMOUS_CODING Fancd2
3L	11236162	3L_11236162_SNP [dm3] 3L_11243062_SNP [dm6]	G	A	2.145e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	21099616	3L_21099616_SNP [dm3] 3L_21106516_SNP [dm6]	T	C	2.149e^-4	0.443	INTRON ko	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16428648	2L_16428648_SNP [dm3] 2L_16428648_SNP [dm6]	C	T	2.150e^-4	0.443	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	7398352	2L_7398352_SNP [dm3] 2L_7398352_SNP [dm6]	T	C	2.150e^-4	0.443	UTR_5_PRIME CG5160
2R	12879488	2R_12879488_SNP [dm3] 2R_16991983_SNP [dm6]	C	A	2.150e^-4	0.443	INTRON Cbp53E
2R	15139746	2R_15139746_SNP [dm3] 2R_19252241_SNP [dm6]	T	A	2.166e^-4	0.443	UPSTREAM CG33454 DOWNSTREAM CG33453 INTERGENIC
2R	15204923	2R_15204923_SNP [dm3] 2R_19317418_SNP [dm6]	A	G	2.166e^-4	0.443	INTRON Rgk1
2R	8923025	2R_8923025_SNP [dm3] 2R_13035520_SNP [dm6]	T	C	2.166e^-4	0.443	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10886824	3L_10886824_SNP [dm3] 3L_10893724_SNP [dm6]	A	G	2.166e^-4	0.443	UPSTREAM Cpr67Fb EXON CR45171
3L	15438646	3L_15438646_SNP [dm3] 3L_15445546_SNP [dm6]	G	A	2.166e^-4	0.443	INTERGENIC
3L	20574373	3L_20574373_DEL [dm3] 3L_20581273_DEL [dm6]	CCC	C	2.166e^-4	0.443	INTERGENIC
3L	6755954	3L_6755954_SNP [dm3] 3L_6762854_SNP [dm6]	G	T	2.166e^-4	0.443	INTRON CG32392
3R	15279391	3R_15279391_SNP [dm3] 3R_19453669_SNP [dm6]	A	T	2.166e^-4	0.443	INTRON CG31221
3R	16556258	3R_16556258_SNP [dm3] 3R_20730536_SNP [dm6]	T	C	2.166e^-4	0.443	INTERGENIC
3R	16558216	3R_16558216_SNP [dm3] 3R_20732494_SNP [dm6]	T	C	2.166e^-4	0.443	SYNONYMOUS_CODING CG31205
3R	16565023	3R_16565023_SNP [dm3] 3R_20739301_SNP [dm6]	G	T	2.166e^-4	0.443	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3R	17975934	3R_17975934_SNP [dm3] 3R_22150212_SNP [dm6]	C	T	2.166e^-4	0.443	INTRON SKIP	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	20598266	3R_20598266_SNP [dm3] 3R_24772544_SNP [dm6]	A	G	2.166e^-4	0.443	INTRON CG42331
3R	25230525	3R_25230525_DEL [dm3] 3R_29404803_DEL [dm6]	AAA	A	2.166e^-4	0.443	INTRON Ptp99A
X	11521916	X_11521916_SNP [dm3] X_11627883_SNP [dm6]	A	T	2.166e^-4	0.443	INTRON Ptp10D
X	19428970	X_19428970_SNP [dm3] X_19534937_SNP [dm6]	C	G	2.178e^-4	0.443	INTRON CG32532
X	19429000	X_19429000_SNP [dm3] X_19534967_SNP [dm6]	C	T	2.178e^-4	0.443	INTRON CG32532
3R	26212540	3R_26212540_SNP [dm3] 3R_30386818_SNP [dm6]	T	G	2.190e^-4	0.443	NON_SYNONYMOUS_CODING Fer1HCH UTR_5_PRIME Fer1HCH UPSTREAM Fer2LCH INTRON Fer1HCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	14981352	2L_14981352_SNP [dm3] 2L_14981352_SNP [dm6]	T	C	2.193e^-4	0.443	INTRON mol
3R	19161970	3R_19161970_SNP [dm3] 3R_23336248_SNP [dm6]	T	C	2.199e^-4	0.443	INTRON pnt
2L	1243013	2L_1243013_SNP [dm3] 2L_1243013_SNP [dm6]	A	T	2.202e^-4	0.443	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
3R	4924610	3R_4924610_SNP [dm3] 3R_9098888_SNP [dm6]	T	A	2.203e^-4	0.443	INTRON pum
X	11068493	X_11068493_SNP [dm3] X_11174460_SNP [dm6]	T	G	2.215e^-4	0.443	INTERGENIC
3R	12629655	3R_12629655_SNP [dm3] 3R_16803933_SNP [dm6]	C	T	2.219e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8912744	2L_8912744_SNP [dm3] 2L_8912744_SNP [dm6]	T	A	2.221e^-4	0.443	INTRON CG34398
3L	7774586	3L_7774586_SNP [dm3] 3L_7781486_SNP [dm6]	G	A	2.224e^-4	0.443	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15069248	3R_15069248_SNP [dm3] 3R_19243526_SNP [dm6]	A	G	2.236e^-4	0.443	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8243809	2L_8243809_SNP [dm3] 2L_8243809_SNP [dm6]	A	T	2.238e^-4	0.443	NON_SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
2L	8243837	2L_8243837_SNP [dm3] 2L_8243837_SNP [dm6]	T	C	2.238e^-4	0.443	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
2L	8243912	2L_8243912_SNP [dm3] 2L_8243912_SNP [dm6]	A	T	2.238e^-4	0.443	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3L	2824977	3L_2824977_SNP [dm3] 3L_2824977_SNP [dm6]	A	G	2.244e^-4	0.443	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18122445	2R_18122445_INS [dm3] 2R_22234940_INS [dm6]	A	AC	2.245e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16443789	2R_16443789_SNP [dm3] 2R_20556284_SNP [dm6]	A	G	2.253e^-4	0.443	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1194168	3L_1194168_SNP [dm3] 3L_1194168_SNP [dm6]	A	C	2.257e^-4	0.443	UPSTREAM Trh DOWNSTREAM LysX INTERGENIC
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	2.268e^-4	0.443	INTRON plum
3R	26199287	3R_26199287_SNP [dm3] 3R_30373565_SNP [dm6]	G	C	2.278e^-4	0.443	INTERGENIC
3R	8871660	3R_8871660_SNP [dm3] 3R_13045938_SNP [dm6]	C	T	2.285e^-4	0.443	SYNONYMOUS_CODING Hsc70-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8888516	3R_8888516_DEL [dm3] 3R_13062794_DEL [dm6]	TTT	T	2.286e^-4	0.443	INTRON sim
2R	3169802	2R_3169802_SNP [dm3] 2R_7282297_SNP [dm6]	T	A	2.293e^-4	0.443	UPSTREAM pwn DOWNSTREAM Incenp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14916295	2R_14916295_SNP [dm3] 2R_19028790_SNP [dm6]	A	G	2.317e^-4	0.443	SYNONYMOUS_CODING 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8776480	3R_8776480_SNP [dm3] 3R_12950758_SNP [dm6]	T	G	2.323e^-4	0.443	INTRON grsm
3R	8776947	3R_8776947_DEL [dm3] 3R_12951225_DEL [dm6]	GCGGACAACTCGGGGATGCA...	AAAAA	2.323e^-4	0.443	INTRON grsm
2L	3849682	2L_3849682_SNP [dm3] 2L_3849682_SNP [dm6]	A	T	2.331e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8568368	3L_8568368_SNP [dm3] 3L_8575268_SNP [dm6]	T	C	2.335e^-4	0.443	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7557594	2L_7557594_INS [dm3] 2L_7557594_INS [dm6]	A	AA	2.337e^-4	0.443	INTRON RapGAP1
3R	2189341	3R_2189341_SNP [dm3] 3R_6363619_SNP [dm6]	C	A	2.338e^-4	0.443	UTR_3_PRIME CG42724 DOWNSTREAM CG42724 INTRON CG42724
3L	14934992	3L_14934992_SNP [dm3] 3L_14941892_SNP [dm6]	A	C	2.340e^-4	0.443	SYNONYMOUS_CODING DCX-EMAP	TF binding site mE1_TFBS_chinmo
3L	20538204	3L_20538204_SNP [dm3] 3L_20545104_SNP [dm6]	T	A	2.340e^-4	0.443	INTERGENIC
3R	4415481	3R_4415481_SNP [dm3] 3R_8589759_SNP [dm6]	G	C	2.344e^-4	0.443	INTRON 5-HT2B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2699295	X_2699295_DEL [dm3] X_2805262_DEL [dm6]	AGCTAAGCCAATT...	A	2.374e^-4	0.443	INTRON kirre
2L	4799922	2L_4799922_SNP [dm3] 2L_4799922_SNP [dm6]	G	A	2.375e^-4	0.443	INTRON Clect27	TF binding site mE1_TFBS_cad
3R	24886222	3R_24886222_SNP [dm3] 3R_29060500_SNP [dm6]	G	A	2.379e^-4	0.443	SYNONYMOUS_CODING Cul5
3R	20495216	3R_20495216_SNP [dm3] 3R_24669494_SNP [dm6]	C	A	2.380e^-4	0.443	INTRON slo	regulatory region REDfly_CRMs
3L	9336735	3L_9336735_SNP [dm3] 3L_9343635_SNP [dm6]	A	T	2.386e^-4	0.443	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	15201530	2L_15201530_SNP [dm3] 2L_15201530_SNP [dm6]	T	G	2.395e^-4	0.443	UPSTREAM CR43357 DOWNSTREAM Sfp35C INTERGENIC
2L	5116507	2L_5116507_SNP [dm3] 2L_5116507_SNP [dm6]	T	G	2.400e^-4	0.443	INTRON Msp300
3R	25826138	3R_25826138_SNP [dm3] 3R_30000416_SNP [dm6]	A	T	2.400e^-4	0.443	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15342261	2R_15342261_SNP [dm3] 2R_19454756_SNP [dm6]	G	A	2.426e^-4	0.443	SYNONYMOUS_CODING CG7744	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6762771	3L_6762771_SNP [dm3] 3L_6769671_SNP [dm6]	C	T	2.429e^-4	0.443	INTERGENIC
X	12517230	X_12517230_SNP [dm3] X_12623197_SNP [dm6]	G	A	2.429e^-4	0.443	DOWNSTREAM CR44568 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11086998	3L_11086998_SNP [dm3] 3L_11093898_SNP [dm6]	C	T	2.436e^-4	0.443	SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	11815924	2R_11815924_SNP [dm3] 2R_15928419_SNP [dm6]	C	T	2.439e^-4	0.443	UPSTREAM bdg INTRON bdg
2R	18583885	2R_18583885_SNP [dm3] 2R_22696380_SNP [dm6]	A	T	2.439e^-4	0.443	INTRON robo
2R	18675227	2R_18675227_DEL [dm3] 2R_22787722_DEL [dm6]	AG	A	2.439e^-4	0.443	INTRON CG42260
2R	18675230	2R_18675230_SNP [dm3] 2R_22787725_SNP [dm6]	A	T	2.439e^-4	0.443	INTRON CG42260
2R	18675231	2R_18675231_SNP [dm3] 2R_22787726_SNP [dm6]	C	G	2.439e^-4	0.443	INTRON CG42260
2R	18675234	2R_18675234_MNP [dm3] 2R_22787729_MNP [dm6]	GTA	ACC	2.439e^-4	0.443	INTRON CG42260
2R	18675238	2R_18675238_SNP [dm3] 2R_22787733_SNP [dm6]	A	T	2.439e^-4	0.443	INTRON CG42260
2R	9814786	2R_9814786_SNP [dm3] 2R_13927281_SNP [dm6]	C	A	2.439e^-4	0.443	INTRON shot	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6223601	3L_6223601_SNP [dm3] 3L_6230501_SNP [dm6]	A	G	2.439e^-4	0.443	INTERGENIC
3L	7840647	3L_7840647_SNP [dm3] 3L_7847547_SNP [dm6]	A	T	2.439e^-4	0.443	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	9143795	3L_9143795_SNP [dm3] 3L_9150695_SNP [dm6]	A	T	2.439e^-4	0.443	UTR_3_PRIME Rdl
3L	9143891	3L_9143891_DEL [dm3] 3L_9150791_DEL [dm6]	TG	T	2.439e^-4	0.443	UTR_3_PRIME Rdl
3R	2430714	3R_2430714_SNP [dm3] 3R_6604992_SNP [dm6]	T	C	2.439e^-4	0.443	INTERGENIC
3R	2700193	3R_2700193_SNP [dm3] 3R_6874471_SNP [dm6]	C	G	2.439e^-4	0.443	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12603004	X_12603004_SNP [dm3] X_12708971_SNP [dm6]	T	C	2.439e^-4	0.443	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	18841922	3R_18841922_SNP [dm3] 3R_23016200_SNP [dm6]	G	A	2.442e^-4	0.443	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8138964	3R_8138964_SNP [dm3] 3R_12313242_SNP [dm6]	A	C	2.458e^-4	0.443	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9670207	3L_9670207_SNP [dm3] 3L_9677107_SNP [dm6]	C	T	2.470e^-4	0.443	INTRON fry
3L	12248309	3L_12248309_SNP [dm3] 3L_12255209_SNP [dm6]	G	A	2.475e^-4	0.443	INTRON app
3L	12248311	3L_12248311_DEL [dm3] 3L_12255211_DEL [dm6]	GC	T	2.475e^-4	0.443	INTRON app
3L	12248314	3L_12248314_SNP [dm3] 3L_12255214_SNP [dm6]	G	A	2.475e^-4	0.443	INTRON app
3L	12248318	3L_12248318_SNP [dm3] 3L_12255218_SNP [dm6]	C	T	2.475e^-4	0.443	INTRON app
3L	12248320	3L_12248320_DEL [dm3] 3L_12255220_DEL [dm6]	TTA	T	2.475e^-4	0.443	INTRON app
2R	17870548	2R_17870548_SNP [dm3] 2R_21983043_SNP [dm6]	C	T	2.480e^-4	0.443	INTERGENIC
2R	11657351	2R_11657351_SNP [dm3] 2R_15769846_SNP [dm6]	G	A	2.516e^-4	0.443	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7524529	2L_7524529_SNP [dm3] 2L_7524529_SNP [dm6]	A	T	2.521e^-4	0.443	INTRON RapGAP1
2R	12477336	2R_12477336_SNP [dm3] 2R_16589831_SNP [dm6]	A	G	2.527e^-4	0.443	SYNONYMOUS_CODING CG8306 UPSTREAM CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12650328	2L_12650328_SNP [dm3] 2L_12650328_SNP [dm6]	T	C	2.535e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18962065	3L_18962065_SNP [dm3] 3L_18968965_SNP [dm6]	C	G	2.539e^-4	0.443	INTERGENIC
3L	2822158	3L_2822158_DEL [dm3] 3L_2822158_DEL [dm6]	AGTTTGA	A	2.540e^-4	0.443	INTRON CG43444
3R	8089126	3R_8089126_INS [dm3] 3R_12263404_INS [dm6]	A	AA	2.543e^-4	0.443	DOWNSTREAM CG44037 INTRON svp
3L	5357775	3L_5357775_DEL [dm3] 3L_5364675_DEL [dm6]	TATT	T	2.546e^-4	0.443	INTRON Uev1A	TF binding site mE1_TFBS_inv
3L	5357784	3L_5357784_SNP [dm3] 3L_5364684_SNP [dm6]	C	T	2.546e^-4	0.443	INTRON Uev1A	TF binding site mE1_TFBS_inv
X	4147271	X_4147271_SNP [dm3] X_4253238_SNP [dm6]	A	G	2.546e^-4	0.443	UPSTREAM CG15576 INTERGENIC
3L	16390334	3L_16390334_SNP [dm3] 3L_16397234_SNP [dm6]	G	A	2.548e^-4	0.443	SYNONYMOUS_CODING CG44836 DOWNSTREAM Grp
2L	9596327	2L_9596327_SNP [dm3] 2L_9596327_SNP [dm6]	T	A	2.551e^-4	0.443	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	15856157	2R_15856157_SNP [dm3] 2R_19968652_SNP [dm6]	T	C	2.555e^-4	0.443	INTERGENIC
3R	25940736	3R_25940736_SNP [dm3] 3R_30115014_SNP [dm6]	G	T	2.567e^-4	0.443	INTRON sima
3L	22650507	3L_22650507_SNP [dm3] 3L_22657407_SNP [dm6]	C	T	2.579e^-4	0.443	INTERGENIC
X	4106348	X_4106348_SNP [dm3] X_4212315_SNP [dm6]	C	T	2.584e^-4	0.443	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14335801	2L_14335801_SNP [dm3] 2L_14335801_SNP [dm6]	T	A	2.586e^-4	0.443	INTRON CG33090
2R	15537725	2R_15537725_SNP [dm3] 2R_19650220_SNP [dm6]	T	C	2.586e^-4	0.443	INTERGENIC
3R	16553727	3R_16553727_SNP [dm3] 3R_20728005_SNP [dm6]	A	T	2.586e^-4	0.443	INTERGENIC
3R	24253800	3R_24253800_SNP [dm3] 3R_28428078_SNP [dm6]	C	T	2.598e^-4	0.443	INTRON beat-VI
X	4893292	X_4893292_SNP [dm3] X_4999259_SNP [dm6]	T	C	2.602e^-4	0.443	DOWNSTREAM CG12680 INTRON CR44833	regulatory region REDfly_CRMs
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	2.606e^-4	0.443	INTRON Rdl
2L	16995380	2L_16995380_SNP [dm3] 2L_16995380_SNP [dm6]	G	C	2.611e^-4	0.443	INTERGENIC
2L	19233053	2L_19233053_SNP [dm3] 2L_19233053_SNP [dm6]	G	C	2.639e^-4	0.443	INTERGENIC
X	11042678	X_11042678_SNP [dm3] X_11148645_SNP [dm6]	C	T	2.639e^-4	0.443	UTR_5_PRIME Ran UPSTREAM Lint-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10440454	2L_10440454_SNP [dm3] 2L_10440454_SNP [dm6]	A	T	2.641e^-4	0.443	NON_SYNONYMOUS_CODING CG13142	TF binding site BDTNP1_TFBS_twi
2L	10962278	2L_10962278_SNP [dm3] 2L_10962278_SNP [dm6]	T	G	2.641e^-4	0.443	INTRON dpr2
2L	12827968	2L_12827968_SNP [dm3] 2L_12827968_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
2L	13760048	2L_13760048_SNP [dm3] 2L_13760048_SNP [dm6]	T	G	2.641e^-4	0.443	INTRON TM9SF4
2L	13952134	2L_13952134_SNP [dm3] 2L_13952134_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON Ance-3
2L	16910436	2L_16910436_SNP [dm3] 2L_16910436_SNP [dm6]	C	T	2.641e^-4	0.443	UPSTREAM ApepP INTRON tweek
2L	19107725	2L_19107725_SNP [dm3] 2L_19107725_SNP [dm6]	C	T	2.641e^-4	0.443	UTR_5_PRIME Lim3 INTRON Lim3
2L	19225669	2L_19225669_SNP [dm3] 2L_19225669_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
2L	19288998	2L_19288998_SNP [dm3] 2L_19288998_SNP [dm6]	T	G	2.641e^-4	0.443	INTERGENIC
2L	19343759	2L_19343759_SNP [dm3] 2L_19343759_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON dnt
2L	1955199	2L_1955199_SNP [dm3] 2L_1955199_SNP [dm6]	C	T	2.641e^-4	0.443	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9364977	2L_9364977_SNP [dm3] 2L_9364977_SNP [dm6]	A	T	2.641e^-4	0.443	EXON CR43404
2L	9565086	2L_9565086_SNP [dm3] 2L_9565086_SNP [dm6]	A	G	2.641e^-4	0.443	UTR_5_PRIME jp INTRON jp
2R	11730880	2R_11730880_SNP [dm3] 2R_15843375_SNP [dm6]	C	T	2.641e^-4	0.443	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	11730940	2R_11730940_SNP [dm3] 2R_15843435_SNP [dm6]	A	T	2.641e^-4	0.443	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	12527028	2R_12527028_SNP [dm3] 2R_16639523_SNP [dm6]	T	A	2.641e^-4	0.443	INTRON Alk	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	12527049	2R_12527049_SNP [dm3] 2R_16639544_SNP [dm6]	A	G	2.641e^-4	0.443	INTRON Alk	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12817083	2R_12817083_SNP [dm3] 2R_16929578_SNP [dm6]	C	A	2.641e^-4	0.443	INTRON Pkc53E
2R	12817091	2R_12817091_SNP [dm3] 2R_16929586_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON Pkc53E
2R	12817096	2R_12817096_SNP [dm3] 2R_16929591_SNP [dm6]	G	T	2.641e^-4	0.443	INTRON Pkc53E
2R	13947093	2R_13947093_SNP [dm3] 2R_18059588_SNP [dm6]	G	A	2.641e^-4	0.443	UPSTREAM CR45314 INTERGENIC
2R	16404753	2R_16404753_SNP [dm3] 2R_20517248_SNP [dm6]	G	C	2.641e^-4	0.443	INTERGENIC
2R	16541269	2R_16541269_SNP [dm3] 2R_20653764_SNP [dm6]	G	A	2.641e^-4	0.443	SYNONYMOUS_CODING CG16799 INTRON Lrt
2R	16541302	2R_16541302_SNP [dm3] 2R_20653797_SNP [dm6]	G	A	2.641e^-4	0.443	SYNONYMOUS_CODING CG16799 INTRON Lrt
2R	7276572	2R_7276572_INS [dm3] 2R_11389067_INS [dm6]	G	GTT	2.641e^-4	0.443	UPSTREAM CG30022 INTRON sprt
2R	7276653	2R_7276653_SNP [dm3] 2R_11389148_SNP [dm6]	G	T	2.641e^-4	0.443	UPSTREAM CG30022 INTRON sprt
2R	7633305	2R_7633305_SNP [dm3] 2R_11745800_SNP [dm6]	C	G	2.641e^-4	0.443	INTERGENIC
2R	8372838	2R_8372838_SNP [dm3] 2R_12485333_SNP [dm6]	C	T	2.641e^-4	0.443	SYNONYMOUS_CODING Dh44-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8372904	2R_8372904_SNP [dm3] 2R_12485399_SNP [dm6]	T	C	2.641e^-4	0.443	SYNONYMOUS_CODING Dh44-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9660171	2R_9660171_SNP [dm3] 2R_13772666_SNP [dm6]	A	C	2.641e^-4	0.443	INTRON Cpr50Ca
2R	9660187	2R_9660187_SNP [dm3] 2R_13772682_SNP [dm6]	A	C	2.641e^-4	0.443	INTRON Cpr50Ca
2R	9660392	2R_9660392_SNP [dm3] 2R_13772887_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON Cpr50Ca
2R	9660922	2R_9660922_SNP [dm3] 2R_13773417_SNP [dm6]	T	C	2.641e^-4	0.443	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	9661596	2R_9661596_SNP [dm3] 2R_13774091_SNP [dm6]	G	C	2.641e^-4	0.443	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	9793023	2R_9793023_SNP [dm3] 2R_13905518_SNP [dm6]	T	A	2.641e^-4	0.443	INTRON shot
3L	10703678	3L_10703678_SNP [dm3] 3L_10710578_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
3L	1120445	3L_1120445_SNP [dm3] 3L_1120445_SNP [dm6]	A	G	2.641e^-4	0.443	INTERGENIC
3L	1121795	3L_1121795_SNP [dm3] 3L_1121795_SNP [dm6]	T	C	2.641e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1122140	3L_1122140_SNP [dm3] 3L_1122140_SNP [dm6]	T	C	2.641e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1123034	3L_1123034_INS [dm3] 3L_1123034_INS [dm6]	C	CAC	2.641e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14081291	3L_14081291_SNP [dm3] 3L_14088191_SNP [dm6]	T	A	2.641e^-4	0.443	INTERGENIC
3L	14081297	3L_14081297_SNP [dm3] 3L_14088197_SNP [dm6]	A	G	2.641e^-4	0.443	INTERGENIC
3L	15396462	3L_15396462_SNP [dm3] 3L_15403362_SNP [dm6]	T	A	2.641e^-4	0.443	INTERGENIC
3L	20531821	3L_20531821_SNP [dm3] 3L_20538721_SNP [dm6]	G	T	2.641e^-4	0.443	INTRON Rcd2
3L	20538271	3L_20538271_SNP [dm3] 3L_20545171_SNP [dm6]	T	A	2.641e^-4	0.443	INTERGENIC
3L	22593650	3L_22593650_SNP [dm3] 3L_22600550_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON CG14459
3L	22650647	3L_22650647_SNP [dm3] 3L_22657547_SNP [dm6]	T	C	2.641e^-4	0.443	INTERGENIC
3L	22652173	3L_22652173_SNP [dm3] 3L_22659073_SNP [dm6]	G	C	2.641e^-4	0.443	INTERGENIC
3L	22653408	3L_22653408_SNP [dm3] 3L_22660308_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
3L	22660514	3L_22660514_SNP [dm3] 3L_22667414_SNP [dm6]	A	T	2.641e^-4	0.443	EXON CR43270	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22668846	3L_22668846_SNP [dm3] 3L_22675746_SNP [dm6]	G	T	2.641e^-4	0.443	INTRON CG14457
3L	22679217	3L_22679217_SNP [dm3] 3L_22686117_SNP [dm6]	G	C	2.641e^-4	0.443	DOWNSTREAM CG14455 INTERGENIC
3L	22681879	3L_22681879_SNP [dm3] 3L_22688779_SNP [dm6]	G	T	2.641e^-4	0.443	DOWNSTREAM CG14456 INTERGENIC
3L	22688791	3L_22688791_SNP [dm3] 3L_22695691_SNP [dm6]	C	G	2.641e^-4	0.443	UPSTREAM CG14452 INTERGENIC	transposable element FlyBase
3L	22690909	3L_22690909_SNP [dm3] 3L_22697809_SNP [dm6]	A	G	2.641e^-4	0.443	UTR_3_PRIME CG32453 DOWNSTREAM CG32453
3L	22691034	3L_22691034_SNP [dm3] 3L_22697934_SNP [dm6]	A	G	2.641e^-4	0.443	UTR_3_PRIME CG32453 DOWNSTREAM CG32453
3L	22703464	3L_22703464_SNP [dm3] 3L_22710364_SNP [dm6]	C	G	2.641e^-4	0.443	INTERGENIC
3L	22708546	3L_22708546_SNP [dm3] 3L_22715446_SNP [dm6]	T	C	2.641e^-4	0.443	NON_SYNONYMOUS_CODING ArfGAP3
3L	22710349	3L_22710349_INS [dm3] 3L_22717249_INS [dm6]	T	TT	2.641e^-4	0.443	UTR_5_PRIME ArfGAP3 UPSTREAM CG32452	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22710369	3L_22710369_SNP [dm3] 3L_22717269_SNP [dm6]	T	A	2.641e^-4	0.443	START_GAINED ArfGAP3 UTR_5_PRIME ArfGAP3 UPSTREAM CG32452	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22714555	3L_22714555_SNP [dm3] 3L_22721455_SNP [dm6]	T	C	2.641e^-4	0.443	NON_SYNONYMOUS_CODING CG14451	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3719765	3L_3719765_SNP [dm3] 3L_3719765_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON CG32264
3L	3720037	3L_3720037_SNP [dm3] 3L_3720037_SNP [dm6]	T	C	2.641e^-4	0.443	INTRON CG32264
3L	6751223	3L_6751223_SNP [dm3] 3L_6758123_SNP [dm6]	C	T	2.641e^-4	0.443	INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6773926	3L_6773926_SNP [dm3] 3L_6780826_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
3L	6773998	3L_6773998_DEL [dm3] 3L_6780898_DEL [dm6]	GCCCA	G	2.641e^-4	0.443	INTERGENIC
3L	6774101	3L_6774101_SNP [dm3] 3L_6781001_SNP [dm6]	C	G	2.641e^-4	0.443	INTERGENIC
3L	7046078	3L_7046078_SNP [dm3] 3L_7052978_SNP [dm6]	G	A	2.641e^-4	0.443	UTR_3_PRIME Mp DOWNSTREAM Mp
3L	7046082	3L_7046082_SNP [dm3] 3L_7052982_SNP [dm6]	T	G	2.641e^-4	0.443	UTR_3_PRIME Mp DOWNSTREAM Mp
3L	7046177	3L_7046177_SNP [dm3] 3L_7053077_SNP [dm6]	G	A	2.641e^-4	0.443	UTR_3_PRIME Mp DOWNSTREAM Mp
3L	7046469	3L_7046469_SNP [dm3] 3L_7053369_SNP [dm6]	G	A	2.641e^-4	0.443	UTR_3_PRIME Mp DOWNSTREAM Mp
3L	7048047	3L_7048047_SNP [dm3] 3L_7054947_SNP [dm6]	C	G	2.641e^-4	0.443	INTERGENIC
3L	7048314	3L_7048314_SNP [dm3] 3L_7055214_SNP [dm6]	G	T	2.641e^-4	0.443	INTERGENIC
3L	7247746	3L_7247746_SNP [dm3] 3L_7254646_SNP [dm6]	A	C	2.641e^-4	0.443	INTRON CG14830
3L	7248595	3L_7248595_SNP [dm3] 3L_7255495_SNP [dm6]	A	G	2.641e^-4	0.443	INTRON CG14830
3L	7272670	3L_7272670_SNP [dm3] 3L_7279570_SNP [dm6]	C	T	2.641e^-4	0.443	INTRON unc-13-4A
3L	7273016	3L_7273016_SNP [dm3] 3L_7279916_SNP [dm6]	C	T	2.641e^-4	0.443	INTRON unc-13-4A
3L	9132337	3L_9132337_SNP [dm3] 3L_9139237_SNP [dm6]	T	C	2.641e^-4	0.443	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_sens
3L	9139273	3L_9139273_SNP [dm3] 3L_9146173_SNP [dm6]	T	A	2.641e^-4	0.443	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi
3L	9509984	3L_9509984_SNP [dm3] 3L_9516884_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON CG33700
3L	9510025	3L_9510025_SNP [dm3] 3L_9516925_SNP [dm6]	G	C	2.641e^-4	0.443	INTRON CG33700
3L	9510157	3L_9510157_SNP [dm3] 3L_9517057_SNP [dm6]	T	G	2.641e^-4	0.443	INTRON CG33700
3L	9510216	3L_9510216_SNP [dm3] 3L_9517116_SNP [dm6]	T	G	2.641e^-4	0.443	INTRON CG33700
3L	9510408	3L_9510408_SNP [dm3] 3L_9517308_SNP [dm6]	C	T	2.641e^-4	0.443	INTRON CG33700
3L	9510438	3L_9510438_SNP [dm3] 3L_9517338_SNP [dm6]	G	T	2.641e^-4	0.443	INTRON CG33700
3R	10279043	3R_10279043_SNP [dm3] 3R_14453321_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	10280103	3R_10280103_DEL [dm3] 3R_14454381_DEL [dm6]	TTTGTATTCATAAAT...	T	2.641e^-4	0.443	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10694632	3R_10694632_SNP [dm3] 3R_14868910_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON btsz
3R	10846081	3R_10846081_SNP [dm3] 3R_15020359_SNP [dm6]	C	T	2.641e^-4	0.443	INTERGENIC
3R	10846833	3R_10846833_SNP [dm3] 3R_15021111_SNP [dm6]	A	C	2.641e^-4	0.443	INTERGENIC
3R	10886605	3R_10886605_SNP [dm3] 3R_15060883_SNP [dm6]	C	A	2.641e^-4	0.443	INTRON dpr9
3R	10891699	3R_10891699_SNP [dm3] 3R_15065977_SNP [dm6]	T	C	2.641e^-4	0.443	INTRON dpr9
3R	10896962	3R_10896962_DEL [dm3] 3R_15071240_DEL [dm6]	AACAAGATAATCTAATAAAA...	A	2.641e^-4	0.443	INTRON dpr9
3R	11347562	3R_11347562_SNP [dm3] 3R_15521840_SNP [dm6]	G	C	2.641e^-4	0.443	INTERGENIC
3R	11347732	3R_11347732_SNP [dm3] 3R_15522010_SNP [dm6]	G	A	2.641e^-4	0.443	INTERGENIC
3R	13436918	3R_13436918_SNP [dm3] 3R_17611196_SNP [dm6]	A	G	2.641e^-4	0.443	SYNONYMOUS_CODING Edg91 DOWNSTREAM CG14329
3R	13436933	3R_13436933_SNP [dm3] 3R_17611211_SNP [dm6]	C	G	2.641e^-4	0.443	SYNONYMOUS_CODING Edg91 DOWNSTREAM CG14329
3R	13769597	3R_13769597_SNP [dm3] 3R_17943875_SNP [dm6]	G	C	2.641e^-4	0.443	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14594099	3R_14594099_SNP [dm3] 3R_18768377_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON CG7720
3R	14709059	3R_14709059_MNP [dm3] 3R_18883337_MNP [dm6]	CTA	TAT	2.641e^-4	0.443	INTERGENIC
3R	16872855	3R_16872855_SNP [dm3] 3R_21047133_SNP [dm6]	T	G	2.641e^-4	0.443	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
3R	16873149	3R_16873149_SNP [dm3] 3R_21047427_SNP [dm6]	G	C	2.641e^-4	0.443	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
3R	16873304	3R_16873304_SNP [dm3] 3R_21047582_SNP [dm6]	G	A	2.641e^-4	0.443	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
3R	17682006	3R_17682006_SNP [dm3] 3R_21856284_SNP [dm6]	A	G	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682180	3R_17682180_INS [dm3] 3R_21856458_INS [dm6]	A	AA	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682192	3R_17682192_SNP [dm3] 3R_21856470_SNP [dm6]	G	A	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682280	3R_17682280_DEL [dm3] 3R_21856558_DEL [dm6]	TCCTAGCACCGC...	T	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682292	3R_17682292_INS [dm3] 3R_21856570_INS [dm6]	T	TTTTCCATAAAATTGT...	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682616	3R_17682616_SNP [dm3] 3R_21856894_SNP [dm6]	T	C	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682631	3R_17682631_SNP [dm3] 3R_21856909_SNP [dm6]	G	A	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682668	3R_17682668_SNP [dm3] 3R_21856946_SNP [dm6]	T	C	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	17682673	3R_17682673_DEL [dm3] 3R_21856951_DEL [dm6]	TT	T	2.641e^-4	0.443	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	17684585	3R_17684585_SNP [dm3] 3R_21858863_SNP [dm6]	G	A	2.641e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	17795833	3R_17795833_SNP [dm3] 3R_21970111_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON Eip93F
3R	17973163	3R_17973163_SNP [dm3] 3R_22147441_SNP [dm6]	T	A	2.641e^-4	0.443	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	17973637	3R_17973637_SNP [dm3] 3R_22147915_SNP [dm6]	A	T	2.641e^-4	0.443	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	17973896	3R_17973896_SNP [dm3] 3R_22148174_SNP [dm6]	A	G	2.641e^-4	0.443	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	17974415	3R_17974415_SNP [dm3] 3R_22148693_SNP [dm6]	A	G	2.641e^-4	0.443	INTRON SKIP
3R	17975658	3R_17975658_SNP [dm3] 3R_22149936_SNP [dm6]	G	A	2.641e^-4	0.443	INTRON SKIP	TF binding site mE1_TFBS_cnc
3R	17985938	3R_17985938_SNP [dm3] 3R_22160216_SNP [dm6]	C	A	2.641e^-4	0.443	INTRON SKIP
3R	2036359	3R_2036359_SNP [dm3] 3R_6210637_SNP [dm6]	C	T	2.641e^-4	0.443	UPSTREAM Osi2 INTRON Osi2
3R	2036461	3R_2036461_SNP [dm3] 3R_6210739_SNP [dm6]	A	G	2.641e^-4	0.443	UPSTREAM Osi2 INTRON Osi2
3R	21427687	3R_21427687_SNP [dm3] 3R_25601965_SNP [dm6]	G	A	2.641e^-4	0.443	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
3R	22252430	3R_22252430_DEL [dm3] 3R_26426708_DEL [dm6]	TTTTCCAAACACTTTTTCGG...	T	2.641e^-4	0.443	UPSTREAM CG34291 INTRON CR31084
3R	23293782	3R_23293782_INS [dm3] 3R_27468060_INS [dm6]	A	TATAG	2.641e^-4	0.443	DOWNSTREAM CG13978 INTERGENIC
3R	23434608	3R_23434608_SNP [dm3] 3R_27608886_SNP [dm6]	G	T	2.641e^-4	0.443	INTRON Tusp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24602914	3R_24602914_SNP [dm3] 3R_28777192_SNP [dm6]	T	G	2.641e^-4	0.443	UPSTREAM CR44952 INTERGENIC

By genomic position
Variant impact
Gene name

pc_MB_Alpha_Missing phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results