DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.653e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

11537 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	18871824	2L_18871824_DEL [dm3] 2L_18871824_DEL [dm6]	GCATA	G	2.947e^-237	8.528e^-233	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18872036	2L_18872036_SNP [dm3] 2L_18872036_SNP [dm6]	C	T	2.947e^-237	8.528e^-233	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18872056	2L_18872056_INS [dm3] 2L_18872056_INS [dm6]	C	AATA	2.947e^-237	8.528e^-233	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18872058	2L_18872058_SNP [dm3] 2L_18872058_SNP [dm6]	G	C	2.947e^-237	8.528e^-233	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18920689	2L_18920689_DEL [dm3] 2L_18920689_DEL [dm6]	ATCCCC	A	2.947e^-237	8.528e^-233	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	18921385	2L_18921385_SNP [dm3] 2L_18921385_SNP [dm6]	C	A	2.947e^-237	8.528e^-233	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	18927777	2L_18927777_SNP [dm3] 2L_18927777_SNP [dm6]	C	A	2.947e^-237	8.528e^-233	INTRON ssp3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Kr
2L	18931272	2L_18931272_SNP [dm3] 2L_18931272_SNP [dm6]	G	A	2.947e^-237	8.528e^-233	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18954308	2L_18954308_SNP [dm3] 2L_18954308_SNP [dm6]	A	T	2.947e^-237	8.528e^-233	UTR_5_PRIME CG10621 UPSTREAM CR44741
2L	18962004	2L_18962004_DEL [dm3] 2L_18962004_DEL [dm6]	GTAC	G	2.947e^-237	8.528e^-233	UTR_3_PRIME Nak INTRON Nak
2L	18972958	2L_18972958_SNP [dm3] 2L_18972958_SNP [dm6]	G	A	2.947e^-237	8.528e^-233	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20628366	2L_20628366_SNP [dm3] 2L_20628366_SNP [dm6]	A	C	2.947e^-237	8.528e^-233	INTERGENIC
2L	20628390	2L_20628390_SNP [dm3] 2L_20628390_SNP [dm6]	T	C	2.947e^-237	8.528e^-233	INTERGENIC
3R	12955165	3R_12955165_DEL [dm3] 3R_17129443_DEL [dm6]	CAC	C	2.947e^-237	8.528e^-233	UTR_3_PRIME CG17475 DOWNSTREAM CG31265	TF binding site mE1_TFBS_cad
2R	9248658	2R_9248658_SNP [dm3] 2R_13361153_SNP [dm6]	A	T	2.972e^-237	8.528e^-233	DOWNSTREAM CR45312 INTERGENIC
3L	6264340	3L_6264340_SNP [dm3] 3L_6271240_SNP [dm6]	A	G	2.984e^-237	8.528e^-233	INTERGENIC
3L	6264379	3L_6264379_SNP [dm3] 3L_6271279_SNP [dm6]	G	A	2.984e^-237	8.528e^-233	INTERGENIC
X	7994219	X_7994219_SNP [dm3] X_8100186_SNP [dm6]	A	G	2.984e^-237	8.528e^-233	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17082303	2L_17082303_SNP [dm3] 2L_17082303_SNP [dm6]	G	C	2.988e^-237	8.528e^-233	INTERGENIC
2L	18425492	2L_18425492_SNP [dm3] 2L_18425492_SNP [dm6]	A	T	2.988e^-237	8.528e^-233	INTERGENIC
2L	18452192	2L_18452192_SNP [dm3] 2L_18452192_SNP [dm6]	C	T	2.988e^-237	8.528e^-233	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	18466124	2L_18466124_SNP [dm3] 2L_18466124_SNP [dm6]	C	T	2.988e^-237	8.528e^-233	INTRON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20218053	2R_20218053_SNP [dm3] 2R_24330530_SNP [dm6]	C	T	2.988e^-237	8.528e^-233	DOWNSTREAM CR44810 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	20740648	2R_20740648_SNP [dm3] 2R_24853125_SNP [dm6]	G	A	2.988e^-237	8.528e^-233	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4331576	2R_4331576_SNP [dm3] 2R_8444071_SNP [dm6]	T	C	2.988e^-237	8.528e^-233	UPSTREAM Cyp4e2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	10525037	3L_10525037_DEL [dm3] 3L_10531937_DEL [dm6]	GG	G	2.988e^-237	8.528e^-233	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11952827	3L_11952827_SNP [dm3] 3L_11959727_SNP [dm6]	C	A	2.988e^-237	8.528e^-233	NON_SYNONYMOUS_CODING prc DOWNSTREAM CG43294
3L	15475568	3L_15475568_DEL [dm3] 3L_15482468_DEL [dm6]	ATAATAAAACGAGGGACAAT...	A	2.988e^-237	8.528e^-233	INTERGENIC
3L	17610056	3L_17610056_DEL [dm3] 3L_17616956_DEL [dm6]	TCT	T	2.988e^-237	8.528e^-233	INTRON Eip74EF
3L	17875855	3L_17875855_SNP [dm3] 3L_17882755_SNP [dm6]	C	G	2.988e^-237	8.528e^-233	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
3L	17875859	3L_17875859_SNP [dm3] 3L_17882759_SNP [dm6]	T	A	2.988e^-237	8.528e^-233	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
3L	18574227	3L_18574227_SNP [dm3] 3L_18581127_SNP [dm6]	G	A	2.988e^-237	8.528e^-233	INTERGENIC
X	21910828	X_21910828_SNP [dm3] X_22508992_SNP [dm6]	T	C	2.988e^-237	8.528e^-233	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2343998	X_2343998_SNP [dm3] X_2449965_SNP [dm6]	G	T	2.988e^-237	8.528e^-233	NON_SYNONYMOUS_CODING z INTRON boi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18749747	2L_18749747_SNP [dm3] 2L_18749747_SNP [dm6]	T	C	3.006e^-237	8.528e^-233	INTERGENIC
2L	18864574	2L_18864574_SNP [dm3] 2L_18864574_SNP [dm6]	C	T	3.006e^-237	8.528e^-233	INTRON tup
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	3.006e^-237	8.528e^-233	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18957934	2L_18957934_SNP [dm3] 2L_18957934_SNP [dm6]	T	G	3.006e^-237	8.528e^-233	UTR_3_PRIME Nak UPSTREAM CG10623
2L	18981834	2L_18981834_SNP [dm3] 2L_18981834_SNP [dm6]	A	T	3.006e^-237	8.528e^-233	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3261346	2L_3261346_SNP [dm3] 2L_3261346_SNP [dm6]	C	T	3.006e^-237	8.528e^-233	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
2R	15405004	2R_15405004_SNP [dm3] 2R_19517499_SNP [dm6]	T	C	3.006e^-237	8.528e^-233	DOWNSTREAM sm INTERGENIC
2R	16684556	2R_16684556_SNP [dm3] 2R_20797051_SNP [dm6]	T	C	3.006e^-237	8.528e^-233	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16708791	2R_16708791_SNP [dm3] 2R_20821286_SNP [dm6]	T	C	3.006e^-237	8.528e^-233	UTR_3_PRIME insc
2R	16708824	2R_16708824_SNP [dm3] 2R_20821319_SNP [dm6]	A	C	3.006e^-237	8.528e^-233	UTR_3_PRIME insc
2R	3924511	2R_3924511_SNP [dm3] 2R_8037006_SNP [dm6]	A	C	3.006e^-237	8.528e^-233	INTRON Optix
3L	15678690	3L_15678690_SNP [dm3] 3L_15685590_SNP [dm6]	A	T	3.006e^-237	8.528e^-233	DOWNSTREAM CG34452 INTRON pgant8	TF binding site mE1_TFBS_inv
3L	18019051	3L_18019051_SNP [dm3] 3L_18025951_SNP [dm6]	G	A	3.006e^-237	8.528e^-233	INTRON Eip75B
3L	1841589	3L_1841589_SNP [dm3] 3L_1841589_SNP [dm6]	A	G	3.006e^-237	8.528e^-233	INTRON Cpr62Bc
3L	7196719	3L_7196719_SNP [dm3] 3L_7203619_SNP [dm6]	G	C	3.006e^-237	8.528e^-233	INTERGENIC
3L	8509806	3L_8509806_SNP [dm3] 3L_8516706_SNP [dm6]	C	T	3.006e^-237	8.528e^-233	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8510025	3L_8510025_SNP [dm3] 3L_8516925_SNP [dm6]	C	T	3.006e^-237	8.528e^-233	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3279714	3R_3279714_SNP [dm3] 3R_7453992_SNP [dm6]	T	G	3.006e^-237	8.528e^-233	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3311177	3R_3311177_SNP [dm3] 3R_7485455_SNP [dm6]	T	A	3.006e^-237	8.528e^-233	INTERGENIC
3R	3322696	3R_3322696_SNP [dm3] 3R_7496974_SNP [dm6]	G	A	3.006e^-237	8.528e^-233	INTRON alpha-Est9
3R	3331381	3R_3331381_SNP [dm3] 3R_7505659_SNP [dm6]	A	C	3.006e^-237	8.528e^-233	UPSTREAM alpha-Est9 INTERGENIC
X	21149886	X_21149886_INS [dm3] X_21278859_INS [dm6]	A	ACCACTCGTGAATTAAAAAA...	3.006e^-237	8.528e^-233	INTRON CG32521
X	2839618	X_2839618_SNP [dm3] X_2945585_SNP [dm6]	A	G	3.006e^-237	8.528e^-233	SYNONYMOUS_CODING CG14423 INTRON kirre	TF binding site mE1_TFBS_inv
X	6635482	X_6635482_DEL [dm3] X_6741449_DEL [dm6]	CAA	C	3.006e^-237	8.528e^-233	DOWNSTREAM RpL17 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	7994914	X_7994914_SNP [dm3] X_8100881_SNP [dm6]	G	T	3.006e^-237	8.528e^-233	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10954866	3L_10954866_SNP [dm3] 3L_10961766_SNP [dm6]	C	G	3.058e^-237	8.528e^-233	EXON CR45249
3L	1938310	3L_1938310_SNP [dm3] 3L_1938310_SNP [dm6]	G	A	3.058e^-237	8.528e^-233	DOWNSTREAM CR44536 INTRON CG5687
2L	3339037	2L_3339037_SNP [dm3] 2L_3339037_SNP [dm6]	G	A	3.230e^-237	8.528e^-233	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13685032	3L_13685032_SNP [dm3] 3L_13691932_SNP [dm6]	T	G	3.230e^-237	8.528e^-233	INTRON bru-3
2L	18784749	2L_18784749_SNP [dm3] 2L_18784749_SNP [dm6]	C	G	3.392e^-237	8.528e^-233	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	18806266	2L_18806266_SNP [dm3] 2L_18806266_SNP [dm6]	A	T	3.392e^-237	8.528e^-233	UPSTREAM CG43814 & 1 other INTERGENIC
2R	5498557	2R_5498557_SNP [dm3] 2R_9611052_SNP [dm6]	A	G	3.392e^-237	8.528e^-233	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5498569	2R_5498569_SNP [dm3] 2R_9611064_SNP [dm6]	A	G	3.392e^-237	8.528e^-233	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5498637	2R_5498637_SNP [dm3] 2R_9611132_SNP [dm6]	G	A	3.392e^-237	8.528e^-233	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_twi
3L	11528379	3L_11528379_SNP [dm3] 3L_11535279_SNP [dm6]	G	A	3.392e^-237	8.528e^-233	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	11573954	3L_11573954_SNP [dm3] 3L_11580854_SNP [dm6]	C	T	3.392e^-237	8.528e^-233	UTR_3_PRIME CG43391 UPSTREAM CG43390 DOWNSTREAM CG33269
3L	637546	3L_637546_SNP [dm3] 3L_637546_SNP [dm6]	G	A	3.392e^-237	8.528e^-233	EXON CR43334 & 1 other	regulatory region REDfly_CRMs
3R	13535032	3R_13535032_SNP [dm3] 3R_17709310_SNP [dm6]	T	C	3.392e^-237	8.528e^-233	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20559698	X_20559698_SNP [dm3] X_20688671_SNP [dm6]	C	T	3.392e^-237	8.528e^-233	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25442262	3R_25442262_SNP [dm3] 3R_29616540_SNP [dm6]	T	C	2.984e^-219	7.402e^-215	INTRON alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14394602	3L_14394602_SNP [dm3] 3L_14401502_SNP [dm6]	G	T	7.802e^-192	1.909e^-187	SYNONYMOUS_CODING CG3868
2R	12688444	2R_12688444_SNP [dm3] 2R_16800939_SNP [dm6]	G	A	2.292e^-191	5.535e^-187	INTERGENIC
3R	20810907	3R_20810907_SNP [dm3] 3R_24985185_SNP [dm6]	A	T	7.947e^-20	1.894e^-15	UPSTREAM tnc INTRON tnc
2R	2681682	2R_2681682_SNP [dm3] 2R_6794177_SNP [dm6]	A	T	2.046e^-17	4.814e^-13	INTRON Epac	TF binding site mE1_TFBS_chinmo
2L	3637270	2L_3637270_SNP [dm3] 2L_3637270_SNP [dm6]	T	C	6.815e^-15	1.583e^-10	UPSTREAM mir-4972 INTRON for
2L	3126498	2L_3126498_SNP [dm3] 2L_3126498_SNP [dm6]	A	G	1.541e^-14	3.491e^-10	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3428128	2L_3428128_SNP [dm3] 2L_3428128_SNP [dm6]	C	G	1.541e^-14	3.491e^-10	INTERGENIC
3L	17539052	3L_17539052_INS [dm3] 3L_17545952_INS [dm6]	A	AA	2.187e^-13	4.896e^-9	UTR_3_PRIME Nedd4 DOWNSTREAM Jon74E
2L	4938211	2L_4938211_SNP [dm3] 2L_4938211_SNP [dm6]	A	T	5.225e^-13	1.155e^-8	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14733513	2R_14733513_SNP [dm3] 2R_18846008_SNP [dm6]	C	T	6.019e^-13	1.284e^-8	DOWNSTREAM CG15100 INTRON CG15099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	15404443	2R_15404443_SNP [dm3] 2R_19516938_SNP [dm6]	C	T	6.019e^-13	1.284e^-8	DOWNSTREAM sm INTERGENIC
2R	15404455	2R_15404455_SNP [dm3] 2R_19516950_SNP [dm6]	T	C	6.019e^-13	1.284e^-8	DOWNSTREAM sm INTERGENIC
2R	637849	2R_637849_SNP [dm3] 2R_4750344_SNP [dm6]	A	G	7.043e^-12	1.469e^-7	INTRON conu
2R	641613	2R_641613_SNP [dm3] 2R_4754108_SNP [dm6]	T	C	7.043e^-12	1.469e^-7	INTRON conu
X	7994752	X_7994752_SNP [dm3] X_8100719_SNP [dm6]	G	A	2.359e^-11	4.864e^-7	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3973430	2L_3973430_SNP [dm3] 2L_3973430_SNP [dm6]	T	C	4.906e^-11	9.291e^-7	INTRON fred
X	7994692	X_7994692_SNP [dm3] X_8100659_SNP [dm6]	C	A	4.906e^-11	9.291e^-7	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	18867678	2L_18867678_SNP [dm3] 2L_18867678_SNP [dm6]	C	T	5.467e^-11	9.291e^-7	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18867753	2L_18867753_SNP [dm3] 2L_18867753_SNP [dm6]	G	T	5.467e^-11	9.291e^-7	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	956908	2L_956908_SNP [dm3] 2L_956908_SNP [dm6]	T	C	5.467e^-11	9.291e^-7	SYNONYMOUS_CODING CG4341
2R	10862034	2R_10862034_SNP [dm3] 2R_14974529_SNP [dm6]	C	T	5.467e^-11	9.291e^-7	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna
3L	6264301	3L_6264301_SNP [dm3] 3L_6271201_SNP [dm6]	T	G	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264312	3L_6264312_SNP [dm3] 3L_6271212_SNP [dm6]	G	T	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264330	3L_6264330_INS [dm3] 3L_6271230_INS [dm6]	T	TTT	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264335	3L_6264335_SNP [dm3] 3L_6271235_SNP [dm6]	G	A	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264346	3L_6264346_SNP [dm3] 3L_6271246_SNP [dm6]	T	G	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264367	3L_6264367_SNP [dm3] 3L_6271267_SNP [dm6]	T	C	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264378	3L_6264378_SNP [dm3] 3L_6271278_SNP [dm6]	A	T	5.467e^-11	9.291e^-7	INTERGENIC
3L	6264519	3L_6264519_SNP [dm3] 3L_6271419_SNP [dm6]	T	C	5.467e^-11	9.291e^-7	INTERGENIC
3L	6265004	3L_6265004_SNP [dm3] 3L_6271904_SNP [dm6]	T	C	5.467e^-11	9.291e^-7	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7738430	3L_7738430_SNP [dm3] 3L_7745330_SNP [dm6]	A	G	5.467e^-11	9.291e^-7	INTRON CG32373
3L	9291722	3L_9291722_SNP [dm3] 3L_9298622_SNP [dm6]	C	T	5.467e^-11	9.291e^-7	INTERGENIC
X	6632723	X_6632723_SNP [dm3] X_6738690_SNP [dm6]	C	T	5.467e^-11	9.291e^-7	INTRON CG3168
X	7994184	X_7994184_SNP [dm3] X_8100151_SNP [dm6]	T	C	5.467e^-11	9.291e^-7	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18740010	2L_18740010_SNP [dm3] 2L_18740010_SNP [dm6]	T	G	6.232e^-11	9.531e^-7	UTR_5_PRIME CG42752 UPSTREAM CG15167
2L	18742763	2L_18742763_SNP [dm3] 2L_18742763_SNP [dm6]	T	G	6.232e^-11	9.531e^-7	INTERGENIC
2L	18742774	2L_18742774_SNP [dm3] 2L_18742774_SNP [dm6]	A	C	6.232e^-11	9.531e^-7	INTERGENIC
2L	18745519	2L_18745519_DEL [dm3] 2L_18745519_DEL [dm6]	TC	T	6.232e^-11	9.531e^-7	INTERGENIC
2L	18746026	2L_18746026_SNP [dm3] 2L_18746026_SNP [dm6]	C	T	6.232e^-11	9.531e^-7	INTERGENIC
2L	18789653	2L_18789653_SNP [dm3] 2L_18789653_SNP [dm6]	C	G	6.232e^-11	9.531e^-7	INTRON ham	TF binding site mE1_TFBS_cad
2L	18789690	2L_18789690_SNP [dm3] 2L_18789690_SNP [dm6]	A	C	6.232e^-11	9.531e^-7	INTRON ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18885191	2L_18885191_SNP [dm3] 2L_18885191_SNP [dm6]	C	T	6.232e^-11	9.531e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12869662	2R_12869662_SNP [dm3] 2R_16982157_SNP [dm6]	C	T	6.232e^-11	9.531e^-7	INTRON Cbp53E
3L	4622311	3L_4622311_SNP [dm3] 3L_4622311_SNP [dm6]	C	T	6.232e^-11	9.531e^-7	SYNONYMOUS_CODING CG32246 INTRON Src64B	TF binding site mE1_TFBS_sens
3L	7259895	3L_7259895_DEL [dm3] 3L_7266795_DEL [dm6]	TATCT	T	6.232e^-11	9.531e^-7	UTR_3_PRIME unc-13-4A
X	14828603	X_14828603_SNP [dm3] X_14934570_SNP [dm6]	A	G	6.232e^-11	9.531e^-7	UTR_3_PRIME pdgy DOWNSTREAM Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1274039	2L_1274039_SNP [dm3] 2L_1274039_SNP [dm6]	C	T	7.045e^-11	9.795e^-7	INTRON robo3
2L	1274043	2L_1274043_SNP [dm3] 2L_1274043_SNP [dm6]	G	A	7.045e^-11	9.795e^-7	INTRON robo3
2L	1274050	2L_1274050_SNP [dm3] 2L_1274050_SNP [dm6]	G	A	7.045e^-11	9.795e^-7	INTRON robo3
2R	16514810	2R_16514810_SNP [dm3] 2R_20627305_SNP [dm6]	T	C	7.045e^-11	9.795e^-7	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	16514823	2R_16514823_SNP [dm3] 2R_20627318_SNP [dm6]	T	A	7.045e^-11	9.795e^-7	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	16514826	2R_16514826_SNP [dm3] 2R_20627321_SNP [dm6]	A	T	7.045e^-11	9.795e^-7	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	17460859	2R_17460859_SNP [dm3] 2R_21573354_SNP [dm6]	G	A	7.045e^-11	9.795e^-7	INTRON CG10440
2R	17462036	2R_17462036_SNP [dm3] 2R_21574531_SNP [dm6]	C	T	7.045e^-11	9.795e^-7	INTRON CG10440
2R	17462227	2R_17462227_SNP [dm3] 2R_21574722_SNP [dm6]	A	G	7.045e^-11	9.795e^-7	INTRON CG10440
2R	17464520	2R_17464520_SNP [dm3] 2R_21577015_SNP [dm6]	G	A	7.045e^-11	9.795e^-7	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15321646	X_15321646_SNP [dm3] X_15427613_SNP [dm6]	C	T	7.045e^-11	9.795e^-7	INTRON Cngl
X	3048680	X_3048680_SNP [dm3] X_3154647_SNP [dm6]	C	A	7.045e^-11	9.795e^-7	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7737387	3L_7737387_SNP [dm3] 3L_7744287_SNP [dm6]	A	T	7.583e^-11	1.046e^-6	INTRON CG32373
2L	3637491	2L_3637491_SNP [dm3] 2L_3637491_SNP [dm6]	C	A	1.133e^-10	1.489e^-6	UPSTREAM mir-4972 INTRON for
2R	16370549	2R_16370549_SNP [dm3] 2R_20483044_SNP [dm6]	T	A	1.141e^-10	1.489e^-6	INTERGENIC
3L	13398401	3L_13398401_SNP [dm3] 3L_13405301_SNP [dm6]	C	G	1.141e^-10	1.489e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6264230	3L_6264230_DEL [dm3] 3L_6271130_DEL [dm6]	GG	G	1.141e^-10	1.489e^-6	INTERGENIC
3L	11045140	3L_11045140_SNP [dm3] 3L_11052040_SNP [dm6]	A	C	1.144e^-10	1.489e^-6	UPSTREAM CG43693 INTERGENIC
3L	15636878	3L_15636878_SNP [dm3] 3L_15643778_SNP [dm6]	G	A	1.144e^-10	1.489e^-6	INTRON comm3
3L	6264332	3L_6264332_SNP [dm3] 3L_6271232_SNP [dm6]	C	T	1.144e^-10	1.489e^-6	INTERGENIC
3R	9767789	3R_9767789_SNP [dm3] 3R_13942067_SNP [dm6]	G	A	1.144e^-10	1.489e^-6	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	18770457	2L_18770457_SNP [dm3] 2L_18770457_SNP [dm6]	T	C	1.213e^-10	1.525e^-6	INTRON ham
2L	18770471	2L_18770471_SNP [dm3] 2L_18770471_SNP [dm6]	A	G	1.213e^-10	1.525e^-6	INTRON ham
2L	18804182	2L_18804182_SNP [dm3] 2L_18804182_SNP [dm6]	T	G	1.213e^-10	1.525e^-6	DOWNSTREAM CG43814 INTERGENIC
2L	18831493	2L_18831493_SNP [dm3] 2L_18831493_SNP [dm6]	C	A	1.213e^-10	1.525e^-6	UPSTREAM CG17597 INTRON ScpX	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18831578	2L_18831578_SNP [dm3] 2L_18831578_SNP [dm6]	T	A	1.213e^-10	1.525e^-6	UPSTREAM CG17597 INTRON ScpX	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12869734	2R_12869734_SNP [dm3] 2R_16982229_SNP [dm6]	G	T	1.289e^-10	1.550e^-6	INTRON Cbp53E
3L	4561985	3L_4561985_SNP [dm3] 3L_4561985_SNP [dm6]	C	T	1.289e^-10	1.550e^-6	INTRON CG42540	TF binding site mE1_TFBS_inv
X	4128863	X_4128863_DEL [dm3] X_4234830_DEL [dm6]	GG	G	1.289e^-10	1.550e^-6	INTERGENIC
X	4128993	X_4128993_SNP [dm3] X_4234960_SNP [dm6]	A	C	1.289e^-10	1.550e^-6	INTERGENIC
2R	14158322	2R_14158322_INS [dm3] 2R_18270817_INS [dm6]	G	GG	1.292e^-10	1.550e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14361763	3L_14361763_DEL [dm3] 3L_14368663_DEL [dm6]	ATTCCCAGTC	A	1.292e^-10	1.550e^-6	DOWNSTREAM CG13481 & 1 other INTERGENIC
3L	14361773	3L_14361773_INS [dm3] 3L_14368673_INS [dm6]	C	CTGGGAAA	1.292e^-10	1.550e^-6	DOWNSTREAM CG13481 & 1 other INTERGENIC
2L	3761084	2L_3761084_SNP [dm3] 2L_3761084_SNP [dm6]	T	C	1.336e^-10	1.582e^-6	INTRON CG43707	TF binding site mE1_TFBS_chinmo
2L	6215898	2L_6215898_SNP [dm3] 2L_6215898_SNP [dm6]	T	A	1.336e^-10	1.582e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4485111	2L_4485111_SNP [dm3] 2L_4485111_SNP [dm6]	T	C	1.412e^-10	1.605e^-6	SYNONYMOUS_CODING dp
2R	17460200	2R_17460200_SNP [dm3] 2R_21572695_SNP [dm6]	C	T	1.412e^-10	1.605e^-6	INTRON CG10440
2R	16514847	2R_16514847_DEL [dm3] 2R_20627342_DEL [dm6]	CCCCAGCCCAGCAAAT...	C	1.417e^-10	1.605e^-6	DOWNSTREAM Rcd6
3R	6705252	3R_6705252_SNP [dm3] 3R_10879530_SNP [dm6]	G	T	1.417e^-10	1.605e^-6	UPSTREAM CG14695 DOWNSTREAM Tpc1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11106003	X_11106003_SNP [dm3] X_11211970_SNP [dm6]	T	G	1.417e^-10	1.605e^-6	INTERGENIC
X	11106091	X_11106091_SNP [dm3] X_11212058_SNP [dm6]	A	G	1.417e^-10	1.605e^-6	INTERGENIC
X	19888635	X_19888635_SNP [dm3] X_19994602_SNP [dm6]	C	T	1.417e^-10	1.605e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12869607	2R_12869607_SNP [dm3] 2R_16982102_SNP [dm6]	A	G	1.450e^-10	1.617e^-6	INTRON Cbp53E
2R	16811230	2R_16811230_SNP [dm3] 2R_20923725_SNP [dm6]	C	T	1.450e^-10	1.617e^-6	INTRON Rx	TF binding site mE1_TFBS_chinmo
X	8905461	X_8905461_SNP [dm3] X_9011428_SNP [dm6]	A	G	1.454e^-10	1.617e^-6	INTRON rdgA & 1 other
X	15321643	X_15321643_SNP [dm3] X_15427610_SNP [dm6]	A	G	1.585e^-10	1.742e^-6	INTRON Cngl
X	4778814	X_4778814_SNP [dm3] X_4884781_SNP [dm6]	G	T	1.585e^-10	1.742e^-6	INTRON CG42594
2L	18787553	2L_18787553_DEL [dm3] 2L_18787553_DEL [dm6]	TAGCTGCT	T	1.815e^-10	1.983e^-6	UPSTREAM ham INTRON ham
2L	8348201	2L_8348201_SNP [dm3] 2L_8348201_SNP [dm6]	A	G	1.890e^-10	2.052e^-6	INTRON CG7778
2R	1749940	2R_1749940_SNP [dm3] 2R_5862435_SNP [dm6]	C	T	2.160e^-10	2.332e^-6	INTERGENIC
2L	18917220	2L_18917220_SNP [dm3] 2L_18917220_SNP [dm6]	T	C	2.511e^-10	2.688e^-6	SYNONYMOUS_CODING ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18770464	2L_18770464_SNP [dm3] 2L_18770464_SNP [dm6]	C	T	2.519e^-10	2.688e^-6	INTRON ham
2L	3135268	2L_3135268_SNP [dm3] 2L_3135268_SNP [dm6]	C	A	2.673e^-10	2.820e^-6	INTRON toc
2L	3135282	2L_3135282_SNP [dm3] 2L_3135282_SNP [dm6]	A	C	2.673e^-10	2.820e^-6	INTRON toc
3L	3666425	3L_3666425_SNP [dm3] 3L_3666425_SNP [dm6]	C	G	2.829e^-10	2.967e^-6	INTERGENIC
2L	1598968	2L_1598968_DEL [dm3] 2L_1598968_DEL [dm6]	ATGGGAAA	A	2.879e^-10	3.003e^-6	INTRON haf & 1 other
3L	6908389	3L_6908389_DEL [dm3] 3L_6915289_DEL [dm6]	TT	T	2.970e^-10	3.080e^-6	UPSTREAM Prat2 INTERGENIC
3L	19637015	3L_19637015_DEL [dm3] 3L_19643915_DEL [dm6]	ATGCGAGTATTA...	A	3.313e^-10	3.416e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10723978	2L_10723978_SNP [dm3] 2L_10723978_SNP [dm6]	A	G	4.040e^-10	4.052e^-6	UPSTREAM CG6431 INTERGENIC
2L	2289486	2L_2289486_SNP [dm3] 2L_2289486_SNP [dm6]	A	G	4.040e^-10	4.052e^-6	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC
2L	2353595	2L_2353595_SNP [dm3] 2L_2353595_SNP [dm6]	T	C	4.040e^-10	4.052e^-6	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2364305	2L_2364305_SNP [dm3] 2L_2364305_SNP [dm6]	G	A	4.040e^-10	4.052e^-6	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4952259	2L_4952259_SNP [dm3] 2L_4952259_SNP [dm6]	A	C	4.040e^-10	4.052e^-6	UTR_3_PRIME Jon25Bii	TF binding site mE1_TFBS_cad
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	4.959e^-10	4.947e^-6	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	2870817	X_2870817_SNP [dm3] X_2976784_SNP [dm6]	T	G	4.988e^-10	4.948e^-6	INTRON kirre
2L	1439141	2L_1439141_SNP [dm3] 2L_1439141_SNP [dm6]	G	A	5.555e^-10	5.482e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3427114	2L_3427114_SNP [dm3] 2L_3427114_SNP [dm6]	C	T	6.054e^-10	5.942e^-6	UPSTREAM pgant2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11361465	2L_11361465_SNP [dm3] 2L_11361465_SNP [dm6]	A	G	8.060e^-10	7.869e^-6	INTRON salr	regulatory region REDfly_CRMs
2L	3549700	2L_3549700_SNP [dm3] 2L_3549700_SNP [dm6]	G	C	9.413e^-10	9.141e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18194702	3L_18194702_INS [dm3] 3L_18201602_INS [dm6]	T	TT	1.154e^-9	1.114e^-5	INTRON CG7320
2L	17057759	2L_17057759_INS [dm3] 2L_17057759_INS [dm6]	C	CC	1.169e^-9	1.123e^-5	INTERGENIC
3R	13666022	3R_13666022_SNP [dm3] 3R_17840300_SNP [dm6]	T	G	1.464e^-9	1.400e^-5	INTRON tinc
2R	17595163	2R_17595163_SNP [dm3] 2R_21707658_SNP [dm6]	G	A	2.091e^-9	1.929e^-5	UTR_5_PRIME HmgZ INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17595165	2R_17595165_SNP [dm3] 2R_21707660_SNP [dm6]	C	T	2.091e^-9	1.929e^-5	UTR_5_PRIME HmgZ INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9883842	2R_9883842_SNP [dm3] 2R_13996337_SNP [dm6]	G	A	2.091e^-9	1.929e^-5	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16388474	3R_16388474_SNP [dm3] 3R_20562752_SNP [dm6]	C	G	2.091e^-9	1.929e^-5	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5153185	3R_5153185_SNP [dm3] 3R_9327463_SNP [dm6]	T	C	2.091e^-9	1.929e^-5	INTRON CG8861
X	11926823	X_11926823_SNP [dm3] X_12032790_SNP [dm6]	C	G	2.091e^-9	1.929e^-5	UTR_5_PRIME Cyp318a1
X	14460068	X_14460068_SNP [dm3] X_14566035_SNP [dm6]	A	T	2.091e^-9	1.929e^-5	INTERGENIC
2L	6936718	2L_6936718_SNP [dm3] 2L_6936718_SNP [dm6]	A	T	3.343e^-9	3.055e^-5	INTRON CG18304	TF binding site mE1_TFBS_cad
2L	3141630	2L_3141630_SNP [dm3] 2L_3141630_SNP [dm6]	C	G	3.346e^-9	3.055e^-5	INTRON toc
2L	18931703	2L_18931703_SNP [dm3] 2L_18931703_SNP [dm6]	C	T	3.900e^-9	3.425e^-5	INTRON ssp3	TF binding site mE1_TFBS_HSA
3L	18339944	3L_18339944_SNP [dm3] 3L_18346844_SNP [dm6]	T	G	3.900e^-9	3.425e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18690302	3L_18690302_SNP [dm3] 3L_18697202_SNP [dm6]	A	G	3.900e^-9	3.425e^-5	SYNONYMOUS_CODING Dic4 UTR_3_PRIME Dic4
3L	19388879	3L_19388879_SNP [dm3] 3L_19395779_SNP [dm6]	G	C	3.900e^-9	3.425e^-5	INTRON CG32206
3L	6270749	3L_6270749_SNP [dm3] 3L_6277649_SNP [dm6]	C	T	3.900e^-9	3.425e^-5	DOWNSTREAM CG43168 INTERGENIC
3R	13666006	3R_13666006_SNP [dm3] 3R_17840284_SNP [dm6]	A	G	3.900e^-9	3.425e^-5	INTRON tinc
3R	16388471	3R_16388471_SNP [dm3] 3R_20562749_SNP [dm6]	T	C	3.900e^-9	3.425e^-5	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17002926	X_17002926_SNP [dm3] X_17108893_SNP [dm6]	G	T	3.900e^-9	3.425e^-5	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18864757	2L_18864757_SNP [dm3] 2L_18864757_SNP [dm6]	A	G	3.976e^-9	3.475e^-5	INTRON tup	TF binding site mE1_TFBS_HSA
2R	12366866	2R_12366866_SNP [dm3] 2R_16479361_SNP [dm6]	T	G	4.027e^-9	3.503e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5153205	3R_5153205_SNP [dm3] 3R_9327483_SNP [dm6]	G	C	7.291e^-9	5.850e^-5	INTRON CG8861
3L	17771204	3L_17771204_SNP [dm3] 3L_17778104_SNP [dm6]	A	T	7.384e^-9	5.850e^-5	INTERGENIC
3L	5577175	3L_5577175_SNP [dm3] 3L_5584075_SNP [dm6]	C	A	8.606e^-9	5.850e^-5	SYNONYMOUS_CODING l_3_psg2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5577283	3L_5577283_SNP [dm3] 3L_5584183_SNP [dm6]	A	G	8.606e^-9	5.850e^-5	SYNONYMOUS_CODING l_3_psg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26038212	3R_26038212_SNP [dm3] 3R_30212490_SNP [dm6]	A	G	9.105e^-9	5.850e^-5	UTR_3_PRIME CecA2 UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 1 other
3L	19388120	3L_19388120_SNP [dm3] 3L_19395020_SNP [dm6]	C	T	9.247e^-9	5.850e^-5	INTRON CG32206
3R	19802117	3R_19802117_SNP [dm3] 3R_23976395_SNP [dm6]	A	G	9.417e^-9	5.850e^-5	SYNONYMOUS_CODING CG31140	TF binding site mE1_TFBS_chinmo
3R	7665102	3R_7665102_SNP [dm3] 3R_11839380_SNP [dm6]	C	T	9.433e^-9	5.850e^-5	INTRON CG6959
2L	4012518	2L_4012518_SNP [dm3] 2L_4012518_SNP [dm6]	G	A	9.999e^-9	5.850e^-5	INTERGENIC
2R	14662093	2R_14662093_SNP [dm3] 2R_18774588_SNP [dm6]	T	G	9.999e^-9	5.850e^-5	UTR_3_PRIME Mctp UPSTREAM CR43964
2R	18926012	2R_18926012_SNP [dm3] 2R_23038489_SNP [dm6]	A	T	9.999e^-9	5.850e^-5	INTRON twi & 1 other
2R	18929446	2R_18929446_SNP [dm3] 2R_23041923_SNP [dm6]	G	C	9.999e^-9	5.850e^-5	UTR_5_PRIME CG42741 INTRON twi
2R	18935264	2R_18935264_SNP [dm3] 2R_23047741_SNP [dm6]	G	A	9.999e^-9	5.850e^-5	INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	8976883	2R_8976883_SNP [dm3] 2R_13089378_SNP [dm6]	T	A	9.999e^-9	5.850e^-5	INTERGENIC
3L	11413376	3L_11413376_SNP [dm3] 3L_11420276_SNP [dm6]	C	G	9.999e^-9	5.850e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3534380	3L_3534380_INS [dm3] 3L_3534380_INS [dm6]	A	AA	9.999e^-9	5.850e^-5	INTRON Eip63E
3L	4098350	3L_4098350_SNP [dm3] 3L_4098350_SNP [dm6]	C	T	9.999e^-9	5.850e^-5	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	5093214	3L_5093214_SNP [dm3] 3L_5093214_SNP [dm6]	C	G	9.999e^-9	5.850e^-5	INTERGENIC
3L	5093636	3L_5093636_SNP [dm3] 3L_5093636_SNP [dm6]	T	C	9.999e^-9	5.850e^-5	INTERGENIC
3L	5093962	3L_5093962_SNP [dm3] 3L_5093962_SNP [dm6]	C	G	9.999e^-9	5.850e^-5	INTERGENIC
3L	8149376	3L_8149376_SNP [dm3] 3L_8156276_SNP [dm6]	A	G	9.999e^-9	5.850e^-5	INTRON CG42445
X	20946743	X_20946743_SNP [dm3] X_21075716_SNP [dm6]	C	T	9.999e^-9	5.850e^-5	INTRON bves	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17072011	2L_17072011_SNP [dm3] 2L_17072011_SNP [dm6]	A	C	1.112e^-8	5.850e^-5	INTERGENIC
2L	17073694	2L_17073694_SNP [dm3] 2L_17073694_SNP [dm6]	A	G	1.112e^-8	5.850e^-5	INTERGENIC
2L	18426056	2L_18426056_SNP [dm3] 2L_18426056_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	INTERGENIC
2L	18426262	2L_18426262_SNP [dm3] 2L_18426262_SNP [dm6]	C	G	1.112e^-8	5.850e^-5	INTERGENIC
2L	18430301	2L_18430301_SNP [dm3] 2L_18430301_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTERGENIC
2L	18432620	2L_18432620_SNP [dm3] 2L_18432620_SNP [dm6]	T	A	1.112e^-8	5.850e^-5	UPSTREAM CR44488 INTERGENIC
2L	18451458	2L_18451458_SNP [dm3] 2L_18451458_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	18452149	2L_18452149_SNP [dm3] 2L_18452149_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	18892949	2L_18892949_SNP [dm3] 2L_18892949_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2673919	2L_2673919_SNP [dm3] 2L_2673919_SNP [dm6]	C	A	1.112e^-8	5.850e^-5	INTERGENIC
2L	3126784	2L_3126784_SNP [dm3] 2L_3126784_SNP [dm6]	A	C	1.112e^-8	5.850e^-5	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad
2L	4365246	2L_4365246_SNP [dm3] 2L_4365246_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	4709681	2L_4709681_SNP [dm3] 2L_4709681_SNP [dm6]	T	C	1.112e^-8	5.850e^-5	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4790988	2L_4790988_SNP [dm3] 2L_4790988_SNP [dm6]	A	G	1.112e^-8	5.850e^-5	INTRON CG15630
2R	10298899	2R_10298899_SNP [dm3] 2R_14411394_SNP [dm6]	T	C	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING CG17385 UPSTREAM Sin1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17458416	2R_17458416_SNP [dm3] 2R_21570911_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTRON CG10440
2R	20887137	2R_20887137_SNP [dm3] 2R_24999614_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	INTRON zip	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20889674	2R_20889674_DEL [dm3] 2R_25002151_DEL [dm6]	GGAATTTTG	G	1.112e^-8	5.850e^-5	INTRON zip	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20895704	2R_20895704_INS [dm3] 2R_25008181_INS [dm6]	ACCCC	GGGCATTAGGGGG...	1.112e^-8	5.850e^-5	INTRON zip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20898805	2R_20898805_SNP [dm3] 2R_25011282_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	UPSTREAM uzip & 1 other INTRON zip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20906159	2R_20906159_SNP [dm3] 2R_25018636_SNP [dm6]	C	A	1.112e^-8	5.850e^-5	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	20909590	2R_20909590_SNP [dm3] 2R_25022067_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTRON uzip
2R	20917940	2R_20917940_SNP [dm3] 2R_25030417_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	20917948	2R_20917948_SNP [dm3] 2R_25030425_SNP [dm6]	T	A	1.112e^-8	5.850e^-5	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	7682368	2R_7682368_SNP [dm3] 2R_11794863_SNP [dm6]	G	T	1.112e^-8	5.850e^-5	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11162485	3L_11162485_SNP [dm3] 3L_11169385_SNP [dm6]	A	G	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING wls UPSTREAM CG7616	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15408244	3L_15408244_SNP [dm3] 3L_15415144_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15918806	3L_15918806_SNP [dm3] 3L_15925706_SNP [dm6]	T	C	1.112e^-8	5.850e^-5	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17606049	3L_17606049_SNP [dm3] 3L_17612949_SNP [dm6]	G	T	1.112e^-8	5.850e^-5	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	17875366	3L_17875366_SNP [dm3] 3L_17882266_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG7408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17875516	3L_17875516_SNP [dm3] 3L_17882416_SNP [dm6]	T	G	1.112e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG7408	TF binding site mE1_TFBS_cad
3L	3567273	3L_3567273_SNP [dm3] 3L_3567273_SNP [dm6]	C	A	1.112e^-8	5.850e^-5	INTRON Eip63E
3L	3567278	3L_3567278_SNP [dm3] 3L_3567278_SNP [dm6]	T	G	1.112e^-8	5.850e^-5	INTRON Eip63E
3L	3567298	3L_3567298_SNP [dm3] 3L_3567298_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	INTRON Eip63E
3L	3567307	3L_3567307_SNP [dm3] 3L_3567307_SNP [dm6]	T	G	1.112e^-8	5.850e^-5	INTRON Eip63E
3L	3949351	3L_3949351_SNP [dm3] 3L_3949351_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
3L	4024904	3L_4024904_SNP [dm3] 3L_4024904_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	INTRON CG11594
3L	4282718	3L_4282718_SNP [dm3] 3L_4282718_SNP [dm6]	T	C	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING CG11583 DOWNSTREAM srw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6261049	3L_6261049_SNP [dm3] 3L_6267949_SNP [dm6]	C	A	1.112e^-8	5.850e^-5	INTERGENIC
3L	6262733	3L_6262733_SNP [dm3] 3L_6269633_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTERGENIC
3R	10878560	3R_10878560_SNP [dm3] 3R_15052838_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTERGENIC
3R	10878563	3R_10878563_SNP [dm3] 3R_15052841_SNP [dm6]	A	C	1.112e^-8	5.850e^-5	INTERGENIC
3R	10878568	3R_10878568_SNP [dm3] 3R_15052846_SNP [dm6]	A	C	1.112e^-8	5.850e^-5	INTERGENIC
3R	11286175	3R_11286175_SNP [dm3] 3R_15460453_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	INTRON AdamTS-A
3R	8628316	3R_8628316_SNP [dm3] 3R_12802594_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	INTERGENIC
X	14942245	X_14942245_SNP [dm3] X_15048212_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
X	17319904	X_17319904_SNP [dm3] X_17425871_SNP [dm6]	A	T	1.112e^-8	5.850e^-5	UPSTREAM CG5613 INTRON CG12994 & 1 other
X	18361538	X_18361538_SNP [dm3] X_18467505_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	INTRON CG32547
X	2344021	X_2344021_SNP [dm3] X_2449988_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	SYNONYMOUS_CODING z INTRON boi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3138489	X_3138489_SNP [dm3] X_3244456_SNP [dm6]	T	G	1.112e^-8	5.850e^-5	UPSTREAM ng4 INTRON dnc
X	3451232	X_3451232_SNP [dm3] X_3557199_SNP [dm6]	A	C	1.112e^-8	5.850e^-5	UPSTREAM ppk8 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	657556	X_657556_SNP [dm3] X_763523_SNP [dm6]	C	T	1.112e^-8	5.850e^-5	UPSTREAM snoRNA:Psi18S-531 DOWNSTREAM snoRNA:Psi28S-2179 INTRON RpL22 EXON CR42491	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	657589	X_657589_SNP [dm3] X_763556_SNP [dm6]	T	A	1.112e^-8	5.850e^-5	UPSTREAM snoRNA:Psi18S-531 DOWNSTREAM snoRNA:Psi28S-2179 INTRON RpL22 EXON CR42491	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	660976	X_660976_SNP [dm3] X_766943_SNP [dm6]	T	A	1.112e^-8	5.850e^-5	DOWNSTREAM CR44966 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	669799	X_669799_SNP [dm3] X_775766_SNP [dm6]	A	G	1.112e^-8	5.850e^-5	INTRON fz3
X	669982	X_669982_SNP [dm3] X_775949_SNP [dm6]	G	A	1.112e^-8	5.850e^-5	INTRON fz3
2L	18968933	2L_18968933_SNP [dm3] 2L_18968933_SNP [dm6]	C	T	1.347e^-8	5.850e^-5	UPSTREAM Tango6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	814559	2L_814559_SNP [dm3] 2L_814559_SNP [dm6]	C	T	1.347e^-8	5.850e^-5	SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	898159	2L_898159_SNP [dm3] 2L_898159_SNP [dm6]	C	G	1.347e^-8	5.850e^-5	UPSTREAM Lsp1beta & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14414428	2R_14414428_SNP [dm3] 2R_18526923_SNP [dm6]	C	G	1.347e^-8	5.850e^-5	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15185436	2R_15185436_SNP [dm3] 2R_19297931_SNP [dm6]	G	A	1.347e^-8	5.850e^-5	UPSTREAM Tab2 INTRON Tab2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11042768	3L_11042768_SNP [dm3] 3L_11049668_SNP [dm6]	A	T	1.347e^-8	5.850e^-5	UPSTREAM CG43693 & 1 other INTRON CG43693
3L	11042826	3L_11042826_SNP [dm3] 3L_11049726_SNP [dm6]	T	A	1.347e^-8	5.850e^-5	UPSTREAM CG43693 & 1 other INTRON CG43693
3L	12477952	3L_12477952_SNP [dm3] 3L_12484852_SNP [dm6]	G	A	1.347e^-8	5.850e^-5	UTR_5_PRIME CG10663 UPSTREAM CG33725 INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14828344	3L_14828344_DEL [dm3] 3L_14835244_DEL [dm6]	GTTAATT	AC	1.347e^-8	5.850e^-5	INTRON CG17839
3L	14828365	3L_14828365_DEL [dm3] 3L_14835265_DEL [dm6]	AA	A	1.347e^-8	5.850e^-5	INTRON CG17839
3L	14828369	3L_14828369_SNP [dm3] 3L_14835269_SNP [dm6]	T	G	1.347e^-8	5.850e^-5	INTRON CG17839
3L	14828372	3L_14828372_SNP [dm3] 3L_14835272_SNP [dm6]	G	T	1.347e^-8	5.850e^-5	INTRON CG17839
3L	14828381	3L_14828381_SNP [dm3] 3L_14835281_SNP [dm6]	T	C	1.347e^-8	5.850e^-5	INTRON CG17839
3L	14828389	3L_14828389_SNP [dm3] 3L_14835289_SNP [dm6]	A	G	1.347e^-8	5.850e^-5	INTRON CG17839
3L	1550395	3L_1550395_SNP [dm3] 3L_1550395_SNP [dm6]	A	G	1.347e^-8	5.850e^-5	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8509120	3L_8509120_SNP [dm3] 3L_8516020_SNP [dm6]	C	G	1.347e^-8	5.850e^-5	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8509132	3L_8509132_SNP [dm3] 3L_8516032_SNP [dm6]	T	C	1.347e^-8	5.850e^-5	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13540003	3R_13540003_SNP [dm3] 3R_17714281_SNP [dm6]	A	G	1.347e^-8	5.850e^-5	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14018729	3R_14018729_SNP [dm3] 3R_18193007_SNP [dm6]	T	C	1.347e^-8	5.850e^-5	UTR_3_PRIME Ssdp
3R	4403113	3R_4403113_SNP [dm3] 3R_8577391_SNP [dm6]	G	T	1.347e^-8	5.850e^-5	UPSTREAM 5-HT2B INTERGENIC	TF binding site mE1_TFBS_cad
3R	9837903	3R_9837903_SNP [dm3] 3R_14012181_SNP [dm6]	T	A	1.347e^-8	5.850e^-5	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14708294	X_14708294_SNP [dm3] X_14814261_SNP [dm6]	C	T	1.347e^-8	5.850e^-5	INTRON rut
X	16202960	X_16202960_DEL [dm3] X_16308927_DEL [dm6]	CT	C	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16202963	X_16202963_SNP [dm3] X_16308930_SNP [dm6]	G	C	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203335	X_16203335_SNP [dm3] X_16309302_SNP [dm6]	T	C	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203483	X_16203483_SNP [dm3] X_16309450_SNP [dm6]	C	A	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203518	X_16203518_INS [dm3] X_16309485_INS [dm6]	A	AA	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203525	X_16203525_SNP [dm3] X_16309492_SNP [dm6]	T	A	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203528	X_16203528_SNP [dm3] X_16309495_SNP [dm6]	T	A	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203663	X_16203663_INS [dm3] X_16309630_INS [dm6]	T	TGTACATAC	1.347e^-8	5.850e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203707	X_16203707_SNP [dm3] X_16309674_SNP [dm6]	A	G	1.347e^-8	5.850e^-5	DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16204030	X_16204030_SNP [dm3] X_16309997_SNP [dm6]	G	T	1.347e^-8	5.850e^-5	UTR_3_PRIME CG9915 DOWNSTREAM CG9915
X	16204071	X_16204071_SNP [dm3] X_16310038_SNP [dm6]	G	A	1.347e^-8	5.850e^-5	UTR_3_PRIME CG9915 DOWNSTREAM CG9915
X	16204137	X_16204137_SNP [dm3] X_16310104_SNP [dm6]	G	C	1.347e^-8	5.850e^-5	UTR_3_PRIME CG9915
X	16204223	X_16204223_SNP [dm3] X_16310190_SNP [dm6]	G	A	1.347e^-8	5.850e^-5	SYNONYMOUS_CODING CG9915
X	21157502	X_21157502_DEL [dm3] X_21286475_DEL [dm6]	TA	T	1.347e^-8	5.850e^-5	INTRON CG1494
X	685072	X_685072_SNP [dm3] X_791039_SNP [dm6]	C	T	1.347e^-8	5.850e^-5	UPSTREAM CG13360 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
X	706164	X_706164_SNP [dm3] X_812131_SNP [dm6]	G	A	1.347e^-8	5.850e^-5	INTRON CG43867
X	714412	X_714412_INS [dm3] X_820379_INS [dm6]	GC	CAA	1.347e^-8	5.850e^-5	INTRON CG43867
X	758445	X_758445_SNP [dm3] X_864412_SNP [dm6]	T	A	1.347e^-8	5.850e^-5	INTRON CG43867
X	758679	X_758679_SNP [dm3] X_864646_SNP [dm6]	A	T	1.347e^-8	5.850e^-5	INTRON CG43867
X	759065	X_759065_SNP [dm3] X_865032_SNP [dm6]	C	A	1.347e^-8	5.850e^-5	INTRON CG43867
2R	17527223	2R_17527223_SNP [dm3] 2R_21639718_SNP [dm6]	C	A	1.360e^-8	5.850e^-5	INTERGENIC
2L	18806462	2L_18806462_SNP [dm3] 2L_18806462_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	UPSTREAM CR43817 INTERGENIC
2L	18812021	2L_18812021_SNP [dm3] 2L_18812021_SNP [dm6]	G	C	1.431e^-8	5.850e^-5	UPSTREAM CG10570 & 3 others INTERGENIC
2L	18813701	2L_18813701_SNP [dm3] 2L_18813701_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	UTR_3_PRIME CG42305 & 1 other
2L	18813702	2L_18813702_SNP [dm3] 2L_18813702_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	UTR_3_PRIME CG42305 & 1 other
2L	18818813	2L_18818813_SNP [dm3] 2L_18818813_SNP [dm6]	A	C	1.431e^-8	5.850e^-5	UPSTREAM CG17324 INTERGENIC
2L	18824748	2L_18824748_SNP [dm3] 2L_18824748_SNP [dm6]	T	G	1.431e^-8	5.850e^-5	INTRON CG17323	TF binding site mE1_TFBS_cad
2L	18824766	2L_18824766_SNP [dm3] 2L_18824766_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTRON CG17323	TF binding site mE1_TFBS_cad
2L	18825558	2L_18825558_SNP [dm3] 2L_18825558_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG17323	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18853460	2L_18853460_SNP [dm3] 2L_18853460_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	SPLICE_SITE_REGION CG17321 INTRON CG17321	TF binding site mE1_TFBS_cad
2L	2181376	2L_2181376_SNP [dm3] 2L_2181376_SNP [dm6]	G	C	1.431e^-8	5.850e^-5	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3878322	2L_3878322_SNP [dm3] 2L_3878322_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTRON capu
2L	56682	2L_56682_SNP [dm3] 2L_56682_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON Cda5
2L	5806598	2L_5806598_SNP [dm3] 2L_5806598_SNP [dm6]	A	C	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG11034	TF binding site mE1_TFBS_cad
2L	5807452	2L_5807452_SNP [dm3] 2L_5807452_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5813970	2L_5813970_SNP [dm3] 2L_5813970_SNP [dm6]	C	G	1.431e^-8	5.850e^-5	INTERGENIC
2R	10785535	2R_10785535_SNP [dm3] 2R_14898030_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	14704306	2R_14704306_SNP [dm3] 2R_18816801_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14914264	2R_14914264_SNP [dm3] 2R_19026759_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON 5-HT1B
2R	15366200	2R_15366200_SNP [dm3] 2R_19478695_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON par-1
2R	16659869	2R_16659869_SNP [dm3] 2R_20772364_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10166151	3L_10166151_DEL [dm3] 3L_10173051_DEL [dm6]	TTAT	T	1.431e^-8	5.850e^-5	INTRON dpr10
3L	10462100	3L_10462100_SNP [dm3] 3L_10469000_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	DOWNSTREAM S-Lap3 INTERGENIC
3L	11036666	3L_11036666_SNP [dm3] 3L_11043566_SNP [dm6]	C	G	1.431e^-8	5.850e^-5	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	11185905	3L_11185905_SNP [dm3] 3L_11192805_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON GlcAT-P
3L	11974624	3L_11974624_SNP [dm3] 3L_11981524_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG43896 DOWNSTREAM CG43896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11975019	3L_11975019_SNP [dm3] 3L_11981919_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG43896 DOWNSTREAM CG43896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11975178	3L_11975178_SNP [dm3] 3L_11982078_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11975208	3L_11975208_SNP [dm3] 3L_11982108_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12214237	3L_12214237_SNP [dm3] 3L_12221137_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	UTR_5_PRIME app	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	12376721	3L_12376721_SNP [dm3] 3L_12383621_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	INTRON Ncc69
3L	12376746	3L_12376746_SNP [dm3] 3L_12383646_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON Ncc69
3L	12376749	3L_12376749_SNP [dm3] 3L_12383649_SNP [dm6]	C	A	1.431e^-8	5.850e^-5	INTRON Ncc69
3L	15305181	3L_15305181_SNP [dm3] 3L_15312081_SNP [dm6]	G	C	1.431e^-8	5.850e^-5	DOWNSTREAM CG7255 INTERGENIC	TF binding site mE1_TFBS_sens
3L	20362822	3L_20362822_SNP [dm3] 3L_20369722_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING in UPSTREAM CG13247	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22942350	3L_22942350_DEL [dm3] 3L_22949250_DEL [dm6]	AATTATGTTATTATTATATT...	A	1.431e^-8	5.850e^-5	INTRON Mes2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3570719	3L_3570719_SNP [dm3] 3L_3570719_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3775517	3L_3775517_SNP [dm3] 3L_3775517_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON CG32264
3L	3777541	3L_3777541_SNP [dm3] 3L_3777541_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTRON CG32264
3L	3855126	3L_3855126_SNP [dm3] 3L_3855126_SNP [dm6]	C	G	1.431e^-8	5.850e^-5	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	6275043	3L_6275043_INS [dm3] 3L_6281943_INS [dm6]	A	AATA	1.431e^-8	5.850e^-5	INTERGENIC
3L	6384824	3L_6384824_SNP [dm3] 3L_6391724_SNP [dm6]	C	G	1.431e^-8	5.850e^-5	INTERGENIC
3L	6386603	3L_6386603_SNP [dm3] 3L_6393503_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6387126	3L_6387126_SNP [dm3] 3L_6394026_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	6390323	3L_6390323_SNP [dm3] 3L_6397223_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6390368	3L_6390368_SNP [dm3] 3L_6397268_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6391406	3L_6391406_SNP [dm3] 3L_6398306_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6391513	3L_6391513_SNP [dm3] 3L_6398413_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTERGENIC
3L	6426415	3L_6426415_SNP [dm3] 3L_6433315_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON CG42747
3L	6426417	3L_6426417_SNP [dm3] 3L_6433317_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	INTRON CG42747
3L	7195416	3L_7195416_SNP [dm3] 3L_7202316_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	INTERGENIC
3L	7196515	3L_7196515_SNP [dm3] 3L_7203415_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTERGENIC
3L	7196729	3L_7196729_SNP [dm3] 3L_7203629_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTERGENIC
3L	7197267	3L_7197267_SNP [dm3] 3L_7204167_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTERGENIC
3L	7293046	3L_7293046_SNP [dm3] 3L_7299946_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON unc-13-4A
3L	7737609	3L_7737609_SNP [dm3] 3L_7744509_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON CG32373
3L	7997677	3L_7997677_SNP [dm3] 3L_8004577_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON nmo
3L	7997696	3L_7997696_SNP [dm3] 3L_8004596_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON nmo
3L	8504772	3L_8504772_SNP [dm3] 3L_8511672_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8507147	3L_8507147_SNP [dm3] 3L_8514047_SNP [dm6]	T	G	1.431e^-8	5.850e^-5	UTR_3_PRIME CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8510058	3L_8510058_SNP [dm3] 3L_8516958_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8510227	3L_8510227_SNP [dm3] 3L_8517127_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9987005	3L_9987005_SNP [dm3] 3L_9993905_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON dpr6
3L	9987082	3L_9987082_SNP [dm3] 3L_9993982_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON dpr6
3L	9987122	3L_9987122_SNP [dm3] 3L_9994022_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON dpr6
3L	9987260	3L_9987260_SNP [dm3] 3L_9994160_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON dpr6
3L	9987440	3L_9987440_SNP [dm3] 3L_9994340_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON dpr6
3L	9987655	3L_9987655_SNP [dm3] 3L_9994555_SNP [dm6]	A	C	1.431e^-8	5.850e^-5	INTRON dpr6
3R	11851313	3R_11851313_SNP [dm3] 3R_16025591_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	UPSTREAM pnr INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13550724	3R_13550724_SNP [dm3] 3R_17725002_SNP [dm6]	C	A	1.431e^-8	5.850e^-5	UTR_5_PRIME Atg8b UPSTREAM Lgr1
3R	13550922	3R_13550922_SNP [dm3] 3R_17725200_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	UPSTREAM Lgr1 & 1 other INTERGENIC
3R	13924779	3R_13924779_SNP [dm3] 3R_18099057_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON sr
3R	3273749	3R_3273749_SNP [dm3] 3R_7448027_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTERGENIC
3R	3274957	3R_3274957_SNP [dm3] 3R_7449235_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTERGENIC
3R	3281693	3R_3281693_SNP [dm3] 3R_7455971_SNP [dm6]	C	A	1.431e^-8	5.850e^-5	INTERGENIC
3R	3282382	3R_3282382_INS [dm3] 3R_7456660_INS [dm6]	A	AC	1.431e^-8	5.850e^-5	INTERGENIC
3R	3282386	3R_3282386_SNP [dm3] 3R_7456664_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTERGENIC
3R	3310136	3R_3310136_SNP [dm3] 3R_7484414_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTERGENIC
3R	3310221	3R_3310221_DEL [dm3] 3R_7484499_DEL [dm6]	AT	C	1.431e^-8	5.850e^-5	INTERGENIC
3R	3312168	3R_3312168_SNP [dm3] 3R_7486446_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	DOWNSTREAM alpha-Est10 INTERGENIC
3R	3312551	3R_3312551_SNP [dm3] 3R_7486829_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	UTR_3_PRIME alpha-Est10
3R	3314871	3R_3314871_SNP [dm3] 3R_7489149_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	UPSTREAM alpha-Est10 INTRON alpha-Est10
3R	3315561	3R_3315561_SNP [dm3] 3R_7489839_SNP [dm6]	A	C	1.431e^-8	5.850e^-5	INTRON alpha-Est10	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	3319094	3R_3319094_SNP [dm3] 3R_7493372_SNP [dm6]	C	A	1.431e^-8	5.850e^-5	UPSTREAM CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3319151	3R_3319151_SNP [dm3] 3R_7493429_SNP [dm6]	C	A	1.431e^-8	5.850e^-5	UPSTREAM CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3321326	3R_3321326_SNP [dm3] 3R_7495604_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3323806	3R_3323806_SNP [dm3] 3R_7498084_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3324002	3R_3324002_SNP [dm3] 3R_7498280_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3325473	3R_3325473_SNP [dm3] 3R_7499751_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3325483	3R_3325483_SNP [dm3] 3R_7499761_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3325579	3R_3325579_INS [dm3] 3R_7499857_INS [dm6]	A	ATAT	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3325583	3R_3325583_SNP [dm3] 3R_7499861_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3325587	3R_3325587_DEL [dm3] 3R_7499865_DEL [dm6]	TTAGAGCCCACATAAAAGAA...	T	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3328243	3R_3328243_SNP [dm3] 3R_7502521_SNP [dm6]	T	G	1.431e^-8	5.850e^-5	UPSTREAM CG1287 INTRON alpha-Est9
3R	3329404	3R_3329404_SNP [dm3] 3R_7503682_SNP [dm6]	T	A	1.431e^-8	5.850e^-5	INTRON alpha-Est9
3R	3330518	3R_3330518_SNP [dm3] 3R_7504796_SNP [dm6]	G	C	1.431e^-8	5.850e^-5	UTR_5_PRIME alpha-Est9
3R	3333131	3R_3333131_SNP [dm3] 3R_7507409_SNP [dm6]	G	T	1.431e^-8	5.850e^-5	INTERGENIC
3R	3341277	3R_3341277_SNP [dm3] 3R_7515555_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	UTR_5_PRIME alpha-Est8
3R	5865381	3R_5865381_SNP [dm3] 3R_10039659_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON Mical
3R	5866688	3R_5866688_SNP [dm3] 3R_10040966_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	INTRON Mical
3R	8442927	3R_8442927_SNP [dm3] 3R_12617205_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTERGENIC
3R	8608914	3R_8608914_SNP [dm3] 3R_12783192_SNP [dm6]	C	G	1.431e^-8	5.850e^-5	UTR_5_PRIME beat-Vc
3R	8608967	3R_8608967_SNP [dm3] 3R_12783245_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	UPSTREAM beat-Vc INTERGENIC
X	14378658	X_14378658_SNP [dm3] X_14484625_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTERGENIC
X	14969395	X_14969395_SNP [dm3] X_15075362_SNP [dm6]	G	A	1.431e^-8	5.850e^-5	INTRON Lsd-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16230841	X_16230841_SNP [dm3] X_16336808_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17637714	X_17637714_SNP [dm3] X_17743681_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21861939	X_21861939_SNP [dm3] X_22460103_SNP [dm6]	A	T	1.431e^-8	5.850e^-5	INTRON CG14619	transposable element FlyBase
X	6697414	X_6697414_SNP [dm3] X_6803381_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	START_GAINED C3G UTR_5_PRIME C3G UPSTREAM pod1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	6697652	X_6697652_SNP [dm3] X_6803619_SNP [dm6]	T	C	1.431e^-8	5.850e^-5	UPSTREAM pod1 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	6716371	X_6716371_SNP [dm3] X_6822338_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	UPSTREAM Atx-1 INTRON CG4542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6716484	X_6716484_SNP [dm3] X_6822451_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6716652	X_6716652_SNP [dm3] X_6822619_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	NON_SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6718191	X_6718191_SNP [dm3] X_6824158_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	UTR_3_PRIME Atx-1 UPSTREAM nonC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	6718314	X_6718314_SNP [dm3] X_6824281_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	UPSTREAM nonC DOWNSTREAM Atx-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	8227271	X_8227271_SNP [dm3] X_8333238_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTRON nAChRalpha3
X	9720740	X_9720740_SNP [dm3] X_9826707_SNP [dm6]	C	T	1.431e^-8	5.850e^-5	INTRON CG32698
X	9838672	X_9838672_SNP [dm3] X_9944639_SNP [dm6]	A	G	1.431e^-8	5.850e^-5	INTERGENIC
3R	17009886	3R_17009886_SNP [dm3] 3R_21184164_SNP [dm6]	A	T	1.589e^-8	6.479e^-5	INTRON SNF4Agamma	TF binding site mE1_TFBS_inv
X	15955405	X_15955405_SNP [dm3] X_16061372_SNP [dm6]	A	G	1.678e^-8	6.722e^-5	SYNONYMOUS_CODING Muc14A DOWNSTREAM CG12395
2R	18926672	2R_18926672_SNP [dm3] 2R_23039149_SNP [dm6]	C	A	1.685e^-8	6.722e^-5	INTRON twi & 1 other
3L	2578822	3L_2578822_SNP [dm3] 3L_2578822_SNP [dm6]	A	G	1.685e^-8	6.722e^-5	INTRON msn	TF binding site BDTNP1_TFBS_twi
3L	2578835	3L_2578835_SNP [dm3] 3L_2578835_SNP [dm6]	A	G	1.685e^-8	6.722e^-5	INTRON msn	TF binding site BDTNP1_TFBS_twi
3L	2578845	3L_2578845_SNP [dm3] 3L_2578845_SNP [dm6]	A	T	1.685e^-8	6.722e^-5	INTRON msn	TF binding site BDTNP1_TFBS_twi
3L	2578872	3L_2578872_SNP [dm3] 3L_2578872_SNP [dm6]	G	A	1.685e^-8	6.722e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	2578878	3L_2578878_INS [dm3] 3L_2578878_INS [dm6]	T	TAAGTAACTATATACTA...	1.685e^-8	6.722e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	4097981	3L_4097981_SNP [dm3] 3L_4097981_SNP [dm6]	T	C	1.685e^-8	6.722e^-5	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	17401109	X_17401109_SNP [dm3] X_17507076_SNP [dm6]	A	T	1.685e^-8	6.722e^-5	UTR_5_PRIME CG43658 INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	9721309	X_9721309_SNP [dm3] X_9827276_SNP [dm6]	G	T	1.685e^-8	6.722e^-5	INTRON CG32698
3L	5071925	3L_5071925_SNP [dm3] 3L_5071925_SNP [dm6]	A	G	1.747e^-8	6.954e^-5	INTRON Con
2L	4978391	2L_4978391_SNP [dm3] 2L_4978391_SNP [dm6]	G	A	1.767e^-8	6.958e^-5	SYNONYMOUS_CODING CG3792 DOWNSTREAM CG8891
2R	18598120	2R_18598120_SNP [dm3] 2R_22710615_SNP [dm6]	A	G	1.767e^-8	6.958e^-5	INTRON CG30275	TF binding site mE1_TFBS_sens
2R	18925974	2R_18925974_SNP [dm3] 2R_23038451_SNP [dm6]	T	A	1.767e^-8	6.958e^-5	INTRON twi & 1 other
3L	11981663	3L_11981663_SNP [dm3] 3L_11988563_SNP [dm6]	C	T	1.767e^-8	6.958e^-5	INTRON CG6938
X	6698271	X_6698271_SNP [dm3] X_6804238_SNP [dm6]	A	C	1.767e^-8	6.958e^-5	UPSTREAM C3G & 1 other INTRON pod1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4599189	2L_4599189_SNP [dm3] 2L_4599189_SNP [dm6]	A	T	1.851e^-8	7.105e^-5	INTRON dp	TF binding site mE1_TFBS_sbb
2R	17646587	2R_17646587_SNP [dm3] 2R_21759082_SNP [dm6]	G	C	1.851e^-8	7.105e^-5	INTERGENIC
3L	13396273	3L_13396273_DEL [dm3] 3L_13403173_DEL [dm6]	TCCTGCATATAG...	T	1.851e^-8	7.105e^-5	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13396305	3L_13396305_SNP [dm3] 3L_13403205_SNP [dm6]	G	A	1.851e^-8	7.105e^-5	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6516757	3L_6516757_SNP [dm3] 3L_6523657_SNP [dm6]	C	G	1.851e^-8	7.105e^-5	NON_SYNONYMOUS_CODING sfl
3L	6517817	3L_6517817_SNP [dm3] 3L_6524717_SNP [dm6]	C	A	1.851e^-8	7.105e^-5	INTRON sfl
3R	13682363	3R_13682363_SNP [dm3] 3R_17856641_SNP [dm6]	G	T	1.851e^-8	7.105e^-5	INTRON tinc
2L	11684019	2L_11684019_SNP [dm3] 2L_11684019_SNP [dm6]	C	T	1.866e^-8	7.105e^-5	INTERGENIC
2L	17073681	2L_17073681_SNP [dm3] 2L_17073681_SNP [dm6]	A	C	1.866e^-8	7.105e^-5	INTERGENIC
2L	18511399	2L_18511399_SNP [dm3] 2L_18511399_SNP [dm6]	A	T	1.866e^-8	7.105e^-5	INTRON CG10178
2L	4149523	2L_4149523_SNP [dm3] 2L_4149523_SNP [dm6]	G	A	1.866e^-8	7.105e^-5	NON_SYNONYMOUS_CODING CG2955
2R	15071237	2R_15071237_SNP [dm3] 2R_19183732_SNP [dm6]	C	T	1.866e^-8	7.105e^-5	INTRON hppy
3L	10421686	3L_10421686_SNP [dm3] 3L_10428586_SNP [dm6]	G	A	1.866e^-8	7.105e^-5	INTERGENIC
3L	11958230	3L_11958230_SNP [dm3] 3L_11965130_SNP [dm6]	C	T	1.866e^-8	7.105e^-5	SYNONYMOUS_CODING prc
3L	14929836	3L_14929836_INS [dm3] 3L_14936736_INS [dm6]	T	TTC	1.866e^-8	7.105e^-5	INTRON DCX-EMAP
3R	13694841	3R_13694841_SNP [dm3] 3R_17869119_SNP [dm6]	G	T	1.866e^-8	7.105e^-5	NON_SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3L	19674403	3L_19674403_SNP [dm3] 3L_19681303_SNP [dm6]	T	C	1.901e^-8	7.204e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4557604	2L_4557604_SNP [dm3] 2L_4557604_SNP [dm6]	G	A	1.912e^-8	7.204e^-5	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19655839	3L_19655839_SNP [dm3] 3L_19662739_SNP [dm6]	G	T	1.912e^-8	7.204e^-5	INTRON tey	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17799549	2L_17799549_SNP [dm3] 2L_17799549_SNP [dm6]	G	T	1.934e^-8	7.204e^-5	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	17809583	2L_17809583_SNP [dm3] 2L_17809583_SNP [dm6]	T	C	1.934e^-8	7.204e^-5	INTRON CadN2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	5097170	3L_5097170_SNP [dm3] 3L_5097170_SNP [dm6]	C	T	1.955e^-8	7.204e^-5	INTERGENIC
3L	5120093	3L_5120093_SNP [dm3] 3L_5126993_SNP [dm6]	A	G	1.955e^-8	7.204e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5123043	3L_5123043_SNP [dm3] 3L_5129943_SNP [dm6]	C	T	1.955e^-8	7.204e^-5	SYNONYMOUS_CODING CG4597
2L	18493001	2L_18493001_SNP [dm3] 2L_18493001_SNP [dm6]	G	T	1.963e^-8	7.204e^-5	SYNONYMOUS_CODING kon	TF binding site mE1_TFBS_HSA
2L	4370072	2L_4370072_SNP [dm3] 2L_4370072_SNP [dm6]	A	G	1.963e^-8	7.204e^-5	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4370186	2L_4370186_SNP [dm3] 2L_4370186_SNP [dm6]	C	A	1.963e^-8	7.204e^-5	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4790881	2L_4790881_SNP [dm3] 2L_4790881_SNP [dm6]	A	T	1.963e^-8	7.204e^-5	INTRON CG15630
2R	20892691	2R_20892691_SNP [dm3] 2R_25005168_SNP [dm6]	G	A	1.963e^-8	7.204e^-5	INTRON zip
3L	20857363	3L_20857363_SNP [dm3] 3L_20864263_SNP [dm6]	A	C	1.963e^-8	7.204e^-5	INTRON CG32432
3L	3567328	3L_3567328_SNP [dm3] 3L_3567328_SNP [dm6]	A	T	1.963e^-8	7.204e^-5	INTRON Eip63E
3L	3947735	3L_3947735_SNP [dm3] 3L_3947735_SNP [dm6]	C	T	1.963e^-8	7.204e^-5	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
3L	7188889	3L_7188889_SNP [dm3] 3L_7195789_SNP [dm6]	G	A	1.963e^-8	7.204e^-5	INTERGENIC
X	657493	X_657493_SNP [dm3] X_763460_SNP [dm6]	G	T	1.963e^-8	7.204e^-5	UPSTREAM snoRNA:Psi18S-531 DOWNSTREAM CR44965 & 1 other INTRON RpL22 EXON CR42491	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9869187	3R_9869187_SNP [dm3] 3R_14043465_SNP [dm6]	A	G	2.114e^-8	7.487e^-5	INTERGENIC
X	3138487	X_3138487_INS [dm3] X_3244454_INS [dm6]	A	AAAAGAAAAAGAAAAAATTT...	2.114e^-8	7.487e^-5	UPSTREAM ng4 INTRON dnc
3R	19653793	3R_19653793_SNP [dm3] 3R_23828071_SNP [dm6]	T	G	2.197e^-8	7.487e^-5	DOWNSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Kr
3L	15481472	3L_15481472_SNP [dm3] 3L_15488372_SNP [dm6]	G	A	2.198e^-8	7.487e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	755117	X_755117_SNP [dm3] X_861084_SNP [dm6]	C	T	2.198e^-8	7.487e^-5	INTRON CG43867
X	6410842	X_6410842_SNP [dm3] X_6516809_SNP [dm6]	A	G	2.258e^-8	7.487e^-5	UPSTREAM tRNA:CR32748 INTRON CG42340	TF binding site mE1_TFBS_inv
2L	18858241	2L_18858241_SNP [dm3] 2L_18858241_SNP [dm6]	G	A	2.296e^-8	7.487e^-5	SYNONYMOUS_CODING mRpL13 UPSTREAM CG10602 INTRON CG10602
2L	18862461	2L_18862461_DEL [dm3] 2L_18862461_DEL [dm6]	CGGCC	C	2.296e^-8	7.487e^-5	INTRON tup
X	7500042	X_7500042_SNP [dm3] X_7606009_SNP [dm6]	C	T	2.296e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	2268755	2L_2268755_SNP [dm3] 2L_2268755_SNP [dm6]	T	C	2.320e^-8	7.487e^-5	SYNONYMOUS_CODING CG17242
2L	2268807	2L_2268807_SNP [dm3] 2L_2268807_SNP [dm6]	G	A	2.320e^-8	7.487e^-5	NON_SYNONYMOUS_CODING CG17242
2L	2268821	2L_2268821_SNP [dm3] 2L_2268821_SNP [dm6]	T	A	2.320e^-8	7.487e^-5	SYNONYMOUS_CODING CG17242
3L	18555989	3L_18555989_SNP [dm3] 3L_18562889_SNP [dm6]	G	A	2.320e^-8	7.487e^-5	INTRON AstC-R1
3R	3328853	3R_3328853_SNP [dm3] 3R_7503131_SNP [dm6]	G	A	2.320e^-8	7.487e^-5	UPSTREAM CG1287 INTRON alpha-Est9
3R	3377454	3R_3377454_SNP [dm3] 3R_7551732_SNP [dm6]	C	G	2.320e^-8	7.487e^-5	UPSTREAM CG45545 INTERGENIC
X	3350893	X_3350893_SNP [dm3] X_3456860_SNP [dm6]	A	C	2.320e^-8	7.487e^-5	INTRON CR44999
X	5600699	X_5600699_SNP [dm3] X_5706666_SNP [dm6]	T	A	2.320e^-8	7.487e^-5	INTRON CG4096	TF binding site mE1_TFBS_chinmo
X	685126	X_685126_SNP [dm3] X_791093_SNP [dm6]	C	A	2.320e^-8	7.487e^-5	UPSTREAM CR44469 INTERGENIC	TF binding site mE1_TFBS_sens
X	762407	X_762407_SNP [dm3] X_868374_SNP [dm6]	A	T	2.320e^-8	7.487e^-5	INTRON CG43867
X	763153	X_763153_SNP [dm3] X_869120_SNP [dm6]	C	A	2.320e^-8	7.487e^-5	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11045245	3L_11045245_SNP [dm3] 3L_11052145_SNP [dm6]	C	G	2.332e^-8	7.487e^-5	UPSTREAM CG43693 INTERGENIC
2L	2076752	2L_2076752_SNP [dm3] 2L_2076752_SNP [dm6]	C	T	2.348e^-8	7.487e^-5	INTRON dpr3
3L	11047331	3L_11047331_SNP [dm3] 3L_11054231_SNP [dm6]	C	A	2.348e^-8	7.487e^-5	START_GAINED CG7888 UTR_5_PRIME CG7888
3L	14828370	3L_14828370_SNP [dm3] 3L_14835270_SNP [dm6]	G	T	2.348e^-8	7.487e^-5	INTRON CG17839
3L	2747605	3L_2747605_SNP [dm3] 3L_2747605_SNP [dm6]	T	C	2.348e^-8	7.487e^-5	INTRON Mrtf
X	16202959	X_16202959_SNP [dm3] X_16308926_SNP [dm6]	G	T	2.348e^-8	7.487e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	16203681	X_16203681_SNP [dm3] X_16309648_SNP [dm6]	A	C	2.348e^-8	7.487e^-5	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
X	654675	X_654675_SNP [dm3] X_760642_SNP [dm6]	C	G	2.348e^-8	7.487e^-5	INTRON CG5273	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	6957504	2R_6957504_SNP [dm3] 2R_11069999_SNP [dm6]	C	T	2.368e^-8	7.487e^-5	INTRON luna	TF binding site BDTNP1_TFBS_dl
3L	20247144	3L_20247144_SNP [dm3] 3L_20254044_SNP [dm6]	T	C	2.391e^-8	7.487e^-5	INTRON rdgC
2L	10216753	2L_10216753_SNP [dm3] 2L_10216753_SNP [dm6]	C	T	2.398e^-8	7.487e^-5	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv
2L	814655	2L_814655_SNP [dm3] 2L_814655_SNP [dm6]	T	C	2.398e^-8	7.487e^-5	SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5498558	2R_5498558_SNP [dm3] 2R_9611053_SNP [dm6]	A	C	2.398e^-8	7.487e^-5	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14387753	2R_14387753_SNP [dm3] 2R_18500248_SNP [dm6]	G	C	2.428e^-8	7.487e^-5	INTERGENIC
3R	21482507	3R_21482507_SNP [dm3] 3R_25656785_SNP [dm6]	A	G	2.428e^-8	7.487e^-5	SYNONYMOUS_CODING Tnks
3R	3324439	3R_3324439_SNP [dm3] 3R_7498717_SNP [dm6]	A	G	2.428e^-8	7.487e^-5	INTRON alpha-Est9
2L	18881866	2L_18881866_SNP [dm3] 2L_18881866_SNP [dm6]	A	C	2.439e^-8	7.487e^-5	UPSTREAM tup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18919602	2L_18919602_DEL [dm3] 2L_18919602_DEL [dm6]	TT	T	2.439e^-8	7.487e^-5	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919607	2L_18919607_SNP [dm3] 2L_18919607_SNP [dm6]	A	T	2.439e^-8	7.487e^-5	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919608	2L_18919608_SNP [dm3] 2L_18919608_SNP [dm6]	C	G	2.439e^-8	7.487e^-5	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919610	2L_18919610_SNP [dm3] 2L_18919610_SNP [dm6]	G	A	2.439e^-8	7.487e^-5	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919630	2L_18919630_SNP [dm3] 2L_18919630_SNP [dm6]	C	T	2.439e^-8	7.487e^-5	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
2L	18934492	2L_18934492_SNP [dm3] 2L_18934492_SNP [dm6]	G	A	2.439e^-8	7.487e^-5	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3110875	2L_3110875_SNP [dm3] 2L_3110875_SNP [dm6]	C	A	2.439e^-8	7.487e^-5	UTR_3_PRIME PpD6 INTRON toc
2L	3857052	2L_3857052_SNP [dm3] 2L_3857052_SNP [dm6]	A	G	2.439e^-8	7.487e^-5	EXON CR45450	TF binding site mE1_TFBS_sens
3L	7858912	3L_7858912_SNP [dm3] 3L_7865812_SNP [dm6]	A	C	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858913	3L_7858913_SNP [dm3] 3L_7865813_SNP [dm6]	T	A	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858923	3L_7858923_SNP [dm3] 3L_7865823_SNP [dm6]	G	A	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858929	3L_7858929_SNP [dm3] 3L_7865829_SNP [dm6]	T	C	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858934	3L_7858934_SNP [dm3] 3L_7865834_SNP [dm6]	A	C	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858935	3L_7858935_SNP [dm3] 3L_7865835_SNP [dm6]	T	C	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7858939	3L_7858939_SNP [dm3] 3L_7865839_SNP [dm6]	G	T	2.439e^-8	7.487e^-5	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7749464	2R_7749464_SNP [dm3] 2R_11861959_SNP [dm6]	C	T	2.455e^-8	7.487e^-5	UTR_3_PRIME CG34230 DOWNSTREAM Mtor & 1 other
2R	7749465	2R_7749465_SNP [dm3] 2R_11861960_SNP [dm6]	T	G	2.455e^-8	7.487e^-5	UTR_3_PRIME CG34230 DOWNSTREAM Mtor & 1 other
2L	12177013	2L_12177013_DEL [dm3] 2L_12177013_DEL [dm6]	TAATATT	T	2.457e^-8	7.487e^-5	INTRON aret & 1 other
2L	18803932	2L_18803932_SNP [dm3] 2L_18803932_SNP [dm6]	A	C	2.457e^-8	7.487e^-5	DOWNSTREAM CG43814 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18883115	2L_18883115_SNP [dm3] 2L_18883115_SNP [dm6]	T	C	2.457e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18886479	2L_18886479_SNP [dm3] 2L_18886479_SNP [dm6]	T	C	2.457e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	21003390	2L_21003390_SNP [dm3] 2L_21003390_SNP [dm6]	G	C	2.457e^-8	7.487e^-5	INTRON CG42238
2L	2665001	2L_2665001_SNP [dm3] 2L_2665001_SNP [dm6]	T	C	2.457e^-8	7.487e^-5	UPSTREAM CG9879 INTERGENIC
2L	4390779	2L_4390779_SNP [dm3] 2L_4390779_SNP [dm6]	C	T	2.457e^-8	7.487e^-5	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4390790	2L_4390790_SNP [dm3] 2L_4390790_SNP [dm6]	A	T	2.457e^-8	7.487e^-5	SPLICE_SITE_REGION Tps1 INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10785522	2R_10785522_SNP [dm3] 2R_14898017_SNP [dm6]	G	A	2.457e^-8	7.487e^-5	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	17667418	2R_17667418_SNP [dm3] 2R_21779913_SNP [dm6]	G	A	2.457e^-8	7.487e^-5	INTERGENIC
2R	3574566	2R_3574566_SNP [dm3] 2R_7687061_SNP [dm6]	G	A	2.457e^-8	7.487e^-5	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3574580	2R_3574580_SNP [dm3] 2R_7687075_SNP [dm6]	T	C	2.457e^-8	7.487e^-5	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3921560	2R_3921560_SNP [dm3] 2R_8034055_SNP [dm6]	G	T	2.457e^-8	7.487e^-5	INTRON Optix
2R	3937308	2R_3937308_SNP [dm3] 2R_8049803_SNP [dm6]	A	C	2.457e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16654571	3L_16654571_SNP [dm3] 3L_16661471_SNP [dm6]	A	T	2.457e^-8	7.487e^-5	SPLICE_SITE_REGION Baldspot UTR_5_PRIME Baldspot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16654613	3L_16654613_SNP [dm3] 3L_16661513_SNP [dm6]	A	G	2.457e^-8	7.487e^-5	UTR_5_PRIME Baldspot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17437267	3L_17437267_SNP [dm3] 3L_17444167_SNP [dm6]	A	G	2.457e^-8	7.487e^-5	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4972263	3L_4972263_SNP [dm3] 3L_4972263_SNP [dm6]	G	C	2.457e^-8	7.487e^-5	INTRON Con
3L	6262834	3L_6262834_SNP [dm3] 3L_6269734_SNP [dm6]	C	A	2.457e^-8	7.487e^-5	INTERGENIC
3L	6392488	3L_6392488_DEL [dm3] 3L_6399388_DEL [dm6]	GG	G	2.457e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	6396102	3L_6396102_SNP [dm3] 3L_6403002_SNP [dm6]	G	T	2.457e^-8	7.487e^-5	INTRON CG42747
3L	7197599	3L_7197599_SNP [dm3] 3L_7204499_SNP [dm6]	T	C	2.457e^-8	7.487e^-5	INTERGENIC
3R	3272176	3R_3272176_SNP [dm3] 3R_7446454_SNP [dm6]	T	A	2.457e^-8	7.487e^-5	INTERGENIC
3R	3302397	3R_3302397_SNP [dm3] 3R_7476675_SNP [dm6]	C	G	2.457e^-8	7.487e^-5	UPSTREAM tRNA:V3b:84Dd INTERGENIC
3R	3331490	3R_3331490_SNP [dm3] 3R_7505768_SNP [dm6]	C	A	2.457e^-8	7.487e^-5	UPSTREAM alpha-Est9 INTERGENIC
3R	3331511	3R_3331511_SNP [dm3] 3R_7505789_SNP [dm6]	G	A	2.457e^-8	7.487e^-5	UPSTREAM alpha-Est9 INTERGENIC
3R	3331565	3R_3331565_DEL [dm3] 3R_7505843_DEL [dm6]	CA	C	2.457e^-8	7.487e^-5	UPSTREAM alpha-Est9 INTERGENIC
3R	3331646	3R_3331646_SNP [dm3] 3R_7505924_SNP [dm6]	T	G	2.457e^-8	7.487e^-5	UPSTREAM alpha-Est9 INTERGENIC
X	21354178	X_21354178_SNP [dm3] X_21483151_SNP [dm6]	A	G	2.457e^-8	7.487e^-5	EXON CR45511	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6635434	X_6635434_INS [dm3] X_6741401_INS [dm6]	T	TGTTAT	2.457e^-8	7.487e^-5	DOWNSTREAM RpL17 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	8227287	X_8227287_DEL [dm3] X_8333254_DEL [dm6]	AGTTGACTAAGTTA...	A	2.457e^-8	7.487e^-5	INTRON nAChRalpha3
X	4128680	X_4128680_SNP [dm3] X_4234647_SNP [dm6]	C	T	2.459e^-8	7.487e^-5	INTERGENIC
2L	3858215	2L_3858215_DEL [dm3] 2L_3858215_DEL [dm6]	GAAAGACG	G	2.479e^-8	7.487e^-5	INTERGENIC
X	21353518	X_21353518_DEL [dm3] X_21482491_DEL [dm6]	TCAATAGTCCAAGAATTCTT...	T	2.479e^-8	7.487e^-5	DOWNSTREAM CR45511 INTERGENIC
X	21353571	X_21353571_SNP [dm3] X_21482544_SNP [dm6]	A	T	2.479e^-8	7.487e^-5	DOWNSTREAM CR45511 INTERGENIC
2L	18507744	2L_18507744_SNP [dm3] 2L_18507744_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21259039	2L_21259039_DEL [dm3] 2L_21259039_DEL [dm6]	GTGCTAACACTCTCAGTT...	C	2.493e^-8	7.487e^-5	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	61157	2L_61157_SNP [dm3] 2L_61157_SNP [dm6]	T	A	2.493e^-8	7.487e^-5	INTRON Cda5
2R	17851774	2R_17851774_SNP [dm3] 2R_21964269_SNP [dm6]	G	A	2.493e^-8	7.487e^-5	NON_SYNONYMOUS_CODING ppk9	TF binding site mE1_TFBS_chinmo
2R	5640933	2R_5640933_SNP [dm3] 2R_9753428_SNP [dm6]	T	C	2.493e^-8	7.487e^-5	UPSTREAM trpl INTERGENIC
3L	10525581	3L_10525581_DEL [dm3] 3L_10532481_DEL [dm6]	GTG	G	2.493e^-8	7.487e^-5	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11955201	3L_11955201_SNP [dm3] 3L_11962101_SNP [dm6]	C	T	2.493e^-8	7.487e^-5	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	15161704	3L_15161704_SNP [dm3] 3L_15168604_SNP [dm6]	G	A	2.493e^-8	7.487e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17623083	3L_17623083_SNP [dm3] 3L_17629983_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	NON_SYNONYMOUS_CODING CG7510
3L	9549577	3L_9549577_SNP [dm3] 3L_9556477_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	INTRON CG42673
3R	3279190	3R_3279190_SNP [dm3] 3R_7453468_SNP [dm6]	A	C	2.493e^-8	7.487e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3317698	3R_3317698_DEL [dm3] 3R_7491976_DEL [dm6]	TCTTTGCATTGTAAATTTTT...	T	2.493e^-8	7.487e^-5	UPSTREAM alpha-Est10 DOWNSTREAM CG42656 INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl
3R	3317722	3R_3317722_INS [dm3] 3R_7492000_INS [dm6]	A	AGATCTTAAGATC...	2.493e^-8	7.487e^-5	UPSTREAM alpha-Est10 DOWNSTREAM CG42656 INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl
3R	3317960	3R_3317960_INS [dm3] 3R_7492238_INS [dm6]	T	TGATGATGATTGATGAT...	2.493e^-8	7.487e^-5	UPSTREAM alpha-Est10 DOWNSTREAM CG42656 INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl
3R	3317965	3R_3317965_SNP [dm3] 3R_7492243_SNP [dm6]	T	A	2.493e^-8	7.487e^-5	UPSTREAM alpha-Est10 DOWNSTREAM CG42656 INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl
3R	3319796	3R_3319796_SNP [dm3] 3R_7494074_SNP [dm6]	A	T	2.493e^-8	7.487e^-5	UTR_3_PRIME alpha-Est9 UPSTREAM CG42656 & 1 other DOWNSTREAM alpha-Est9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3341275	3R_3341275_SNP [dm3] 3R_7515553_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	UTR_5_PRIME alpha-Est8
3R	3358689	3R_3358689_SNP [dm3] 3R_7532967_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	DOWNSTREAM alpha-Est5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17320157	X_17320157_SNP [dm3] X_17426124_SNP [dm6]	T	C	2.493e^-8	7.487e^-5	SYNONYMOUS_CODING CG5613 INTRON CG12994
X	17637712	X_17637712_SNP [dm3] X_17743679_SNP [dm6]	G	T	2.493e^-8	7.487e^-5	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17943383	X_17943383_SNP [dm3] X_18049350_SNP [dm6]	T	A	2.493e^-8	7.487e^-5	DOWNSTREAM CG15373 INTRON Sh
X	3121694	X_3121694_SNP [dm3] X_3227661_SNP [dm6]	A	G	2.493e^-8	7.487e^-5	INTRON dnc
3L	6275076	3L_6275076_SNP [dm3] 3L_6281976_SNP [dm6]	A	T	2.581e^-8	7.703e^-5	INTERGENIC
3L	6388797	3L_6388797_SNP [dm3] 3L_6395697_SNP [dm6]	G	A	2.581e^-8	7.703e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3321515	3R_3321515_SNP [dm3] 3R_7495793_SNP [dm6]	C	G	2.581e^-8	7.703e^-5	INTRON alpha-Est9
X	15662628	X_15662628_SNP [dm3] X_15768595_SNP [dm6]	G	T	2.581e^-8	7.703e^-5	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
2L	18863897	2L_18863897_SNP [dm3] 2L_18863897_SNP [dm6]	G	A	2.623e^-8	7.703e^-5	INTRON tup
3L	3570717	3L_3570717_SNP [dm3] 3L_3570717_SNP [dm6]	C	A	2.623e^-8	7.703e^-5	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3781465	3L_3781465_SNP [dm3] 3L_3781465_SNP [dm6]	G	A	2.623e^-8	7.703e^-5	INTRON CG32264	TF binding site BDTNP1_TFBS_twi
3L	7197269	3L_7197269_SNP [dm3] 3L_7204169_SNP [dm6]	C	A	2.623e^-8	7.703e^-5	INTERGENIC
3R	14927325	3R_14927325_DEL [dm3] 3R_19101603_DEL [dm6]	GA	G	2.623e^-8	7.703e^-5	INTRON CG6040
3R	3331379	3R_3331379_SNP [dm3] 3R_7505657_SNP [dm6]	C	T	2.623e^-8	7.703e^-5	UPSTREAM alpha-Est9 INTERGENIC
X	10108917	X_10108917_SNP [dm3] X_10214884_SNP [dm6]	A	G	2.623e^-8	7.703e^-5	UTR_3_PRIME l_1_G0230 & 1 other DOWNSTREAM l_1_G0230
X	20554957	X_20554957_SNP [dm3] X_20683930_SNP [dm6]	C	T	2.623e^-8	7.703e^-5	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA
X	20558809	X_20558809_SNP [dm3] X_20687782_SNP [dm6]	A	T	2.623e^-8	7.703e^-5	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	21141738	X_21141738_SNP [dm3] X_21270711_SNP [dm6]	A	C	2.623e^-8	7.703e^-5	INTRON CG32521
3L	5117790	3L_5117790_DEL [dm3] 3L_5124690_DEL [dm6]	CCGCCAACTGCTCGA...	G	2.698e^-8	7.898e^-5	INTERGENIC
3L	5119947	3L_5119947_SNP [dm3] 3L_5126847_SNP [dm6]	C	T	2.698e^-8	7.898e^-5	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	20833502	3R_20833502_SNP [dm3] 3R_25007780_SNP [dm6]	C	T	2.766e^-8	8.084e^-5	INTRON tnc
2R	16812408	2R_16812408_SNP [dm3] 2R_20924903_SNP [dm6]	C	T	2.889e^-8	8.404e^-5	INTRON Rx
3L	17418422	3L_17418422_SNP [dm3] 3L_17425322_SNP [dm6]	T	A	2.889e^-8	8.404e^-5	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17418424	3L_17418424_DEL [dm3] 3L_17425324_DEL [dm6]	AGAC	A	2.889e^-8	8.404e^-5	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2885266	3L_2885266_SNP [dm3] 3L_2885266_SNP [dm6]	T	G	2.982e^-8	8.659e^-5	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20151679	3L_20151679_SNP [dm3] 3L_20158579_SNP [dm6]	G	A	2.998e^-8	8.694e^-5	SYNONYMOUS_CODING CG42674
2L	22216487	2L_22216487_DEL [dm3] 2L_22216487_DEL [dm6]	ACAATATTAAAGAGTATCAG...	A	3.117e^-8	9.024e^-5	INTERGENIC	transposable element FlyBase
X	4193970	X_4193970_SNP [dm3] X_4299937_SNP [dm6]	G	T	3.125e^-8	9.025e^-5	DOWNSTREAM CG12692 INTERGENIC
3L	3135182	3L_3135182_SNP [dm3] 3L_3135182_SNP [dm6]	T	C	3.127e^-8	9.025e^-5	INTRON CG11537
2L	4598014	2L_4598014_SNP [dm3] 2L_4598014_SNP [dm6]	C	T	3.149e^-8	9.065e^-5	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19365954	2R_19365954_SNP [dm3] 2R_23478431_SNP [dm6]	C	T	3.151e^-8	9.065e^-5	UPSTREAM CR43793 INTRON CG43795
2L	4599176	2L_4599176_SNP [dm3] 2L_4599176_SNP [dm6]	G	T	3.177e^-8	9.111e^-5	INTRON dp	TF binding site mE1_TFBS_sbb
2R	6833064	2R_6833064_SNP [dm3] 2R_10945559_SNP [dm6]	C	G	3.177e^-8	9.111e^-5	UPSTREAM CR45228 INTERGENIC
2L	1122115	2L_1122115_SNP [dm3] 2L_1122115_SNP [dm6]	C	T	3.226e^-8	9.238e^-5	INTRON Pino
2L	17807019	2L_17807019_SNP [dm3] 2L_17807019_SNP [dm6]	A	T	3.249e^-8	9.287e^-5	INTRON CadN2
2R	10629515	2R_10629515_SNP [dm3] 2R_14742010_SNP [dm6]	G	A	3.298e^-8	9.400e^-5	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
3L	12946044	3L_12946044_SNP [dm3] 3L_12952944_SNP [dm6]	G	A	3.298e^-8	9.400e^-5	NON_SYNONYMOUS_CODING CG10752
2L	18888024	2L_18888024_SNP [dm3] 2L_18888024_SNP [dm6]	G	A	3.327e^-8	9.435e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15679490	3L_15679490_SNP [dm3] 3L_15686390_SNP [dm6]	T	A	3.331e^-8	9.435e^-5	UTR_3_PRIME pgant8 & 1 other
2L	4938161	2L_4938161_SNP [dm3] 2L_4938161_SNP [dm6]	A	T	3.336e^-8	9.435e^-5	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4938182	2L_4938182_SNP [dm3] 2L_4938182_SNP [dm6]	C	G	3.336e^-8	9.435e^-5	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4938205	2L_4938205_MNP [dm3] 2L_4938205_MNP [dm6]	CGC	TCT	3.336e^-8	9.435e^-5	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10568773	2L_10568773_SNP [dm3] 2L_10568773_SNP [dm6]	T	G	3.376e^-8	9.501e^-5	DOWNSTREAM CG6138 INTRON Trim9
2L	11639949	2L_11639949_SNP [dm3] 2L_11639949_SNP [dm6]	C	G	3.411e^-8	9.501e^-5	INTERGENIC
2L	17762391	2L_17762391_SNP [dm3] 2L_17762391_SNP [dm6]	T	A	3.411e^-8	9.501e^-5	INTRON CadN
2L	17799564	2L_17799564_SNP [dm3] 2L_17799564_SNP [dm6]	A	G	3.411e^-8	9.501e^-5	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	18983367	2L_18983367_SNP [dm3] 2L_18983367_SNP [dm6]	C	T	3.411e^-8	9.501e^-5	INTRON Swip-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12804919	2R_12804919_SNP [dm3] 2R_16917414_SNP [dm6]	A	T	3.411e^-8	9.501e^-5	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	15679008	2R_15679008_SNP [dm3] 2R_19791503_SNP [dm6]	C	T	3.411e^-8	9.501e^-5	INTERGENIC
2R	16075376	2R_16075376_SNP [dm3] 2R_20187871_SNP [dm6]	T	A	3.411e^-8	9.501e^-5	INTERGENIC
2R	16166000	2R_16166000_SNP [dm3] 2R_20278495_SNP [dm6]	C	A	3.411e^-8	9.501e^-5	NON_SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7933405	2R_7933405_SNP [dm3] 2R_12045900_SNP [dm6]	G	A	3.411e^-8	9.501e^-5	INTRON Drep-1
3L	11981677	3L_11981677_SNP [dm3] 3L_11988577_SNP [dm6]	T	A	3.435e^-8	9.553e^-5	INTRON CG6938
2R	20719741	2R_20719741_DEL [dm3] 2R_24832218_DEL [dm6]	TGT	T	3.471e^-8	9.609e^-5	INTRON Dll
3L	14449247	3L_14449247_SNP [dm3] 3L_14456147_SNP [dm6]	A	C	3.471e^-8	9.609e^-5	INTRON bbg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	6261065	3L_6261065_SNP [dm3] 3L_6267965_SNP [dm6]	T	C	3.471e^-8	9.609e^-5	INTERGENIC
X	9283531	X_9283531_MNP [dm3] X_9389498_MNP [dm6]	AGC	GAG	3.484e^-8	9.630e^-5	INTRON mgl
3R	21497790	3R_21497790_DEL [dm3] 3R_25672068_DEL [dm6]	CC	C	3.503e^-8	9.667e^-5	INTRON Lgr3
X	8716778	X_8716778_SNP [dm3] X_8822745_SNP [dm6]	C	A	3.604e^-8	9.932e^-5	INTERGENIC
2L	4097914	2L_4097914_SNP [dm3] 2L_4097914_SNP [dm6]	A	G	3.628e^-8	9.982e^-5	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad
3L	13398213	3L_13398213_SNP [dm3] 3L_13405113_SNP [dm6]	T	A	3.661e^-8	1.006e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6817532	3L_6817532_SNP [dm3] 3L_6824432_SNP [dm6]	G	C	3.679e^-8	1.009e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	12050563	2L_12050563_SNP [dm3] 2L_12050563_SNP [dm6]	C	A	3.696e^-8	1.010e^-4	SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12050566	2L_12050566_SNP [dm3] 2L_12050566_SNP [dm6]	T	C	3.696e^-8	1.010e^-4	SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10691671	3L_10691671_SNP [dm3] 3L_10698571_SNP [dm6]	A	T	3.696e^-8	1.010e^-4	INTERGENIC
3R	27152149	3R_27152149_SNP [dm3] 3R_31326427_SNP [dm6]	C	A	3.736e^-8	1.019e^-4	INTRON CG34347
2R	9110127	2R_9110127_SNP [dm3] 2R_13222622_SNP [dm6]	C	A	3.827e^-8	1.041e^-4	UTR_5_PRIME Dp UPSTREAM Fsn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	751994	X_751994_DEL [dm3] X_857961_DEL [dm6]	GG	G	3.827e^-8	1.041e^-4	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	20725546	2R_20725546_SNP [dm3] 2R_24838023_SNP [dm6]	G	A	3.855e^-8	1.044e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11464178	3L_11464178_SNP [dm3] 3L_11471078_SNP [dm6]	G	T	3.855e^-8	1.044e^-4	INTERGENIC
3L	3947717	3L_3947717_SNP [dm3] 3L_3947717_SNP [dm6]	T	A	3.855e^-8	1.044e^-4	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
X	21156665	X_21156665_SNP [dm3] X_21285638_SNP [dm6]	G	T	3.937e^-8	1.059e^-4	SYNONYMOUS_CODING CG1494
X	6410825	X_6410825_SNP [dm3] X_6516792_SNP [dm6]	A	G	3.937e^-8	1.059e^-4	UPSTREAM tRNA:CR32748 INTRON CG42340	TF binding site mE1_TFBS_inv
X	6410863	X_6410863_SNP [dm3] X_6516830_SNP [dm6]	A	G	3.937e^-8	1.059e^-4	UPSTREAM tRNA:CR32748 INTRON CG42340	TF binding site mE1_TFBS_inv
2L	18857953	2L_18857953_SNP [dm3] 2L_18857953_SNP [dm6]	C	T	3.957e^-8	1.059e^-4	UPSTREAM CG10602 DOWNSTREAM mRpL13 INTRON CG10602
2L	18858119	2L_18858119_SNP [dm3] 2L_18858119_SNP [dm6]	G	A	3.957e^-8	1.059e^-4	SYNONYMOUS_CODING mRpL13 UPSTREAM CG10602 INTRON CG10602
2L	18860371	2L_18860371_SNP [dm3] 2L_18860371_SNP [dm6]	G	A	3.957e^-8	1.059e^-4	UTR_3_PRIME tup DOWNSTREAM tup
2L	18865849	2L_18865849_SNP [dm3] 2L_18865849_SNP [dm6]	T	A	3.957e^-8	1.059e^-4	INTRON tup	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18865889	2L_18865889_SNP [dm3] 2L_18865889_SNP [dm6]	T	C	3.957e^-8	1.059e^-4	INTRON tup	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18967463	2L_18967463_SNP [dm3] 2L_18967463_SNP [dm6]	G	A	3.998e^-8	1.064e^-4	INTRON Nak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18538668	2L_18538668_SNP [dm3] 2L_18538668_SNP [dm6]	T	A	4.000e^-8	1.064e^-4	INTRON Pde11
3L	10147270	3L_10147270_SNP [dm3] 3L_10154170_SNP [dm6]	T	A	4.000e^-8	1.064e^-4	INTRON dpr10
3L	10147272	3L_10147272_SNP [dm3] 3L_10154172_SNP [dm6]	T	G	4.000e^-8	1.064e^-4	INTRON dpr10
2R	9110650	2R_9110650_SNP [dm3] 2R_13223145_SNP [dm6]	A	T	4.026e^-8	1.069e^-4	UPSTREAM Fsn & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	18982234	2L_18982234_SNP [dm3] 2L_18982234_SNP [dm6]	T	G	4.047e^-8	1.070e^-4	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6994190	2R_6994190_SNP [dm3] 2R_11106685_SNP [dm6]	A	T	4.047e^-8	1.070e^-4	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15776646	3L_15776646_SNP [dm3] 3L_15783546_SNP [dm6]	G	C	4.047e^-8	1.070e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11064939	3L_11064939_SNP [dm3] 3L_11071839_SNP [dm6]	C	A	4.101e^-8	1.081e^-4	SYNONYMOUS_CODING Mocs1
3L	15481481	3L_15481481_SNP [dm3] 3L_15488381_SNP [dm6]	T	G	4.101e^-8	1.081e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20465013	3L_20465013_INS [dm3] 3L_20471913_INS [dm6]	C	CC	4.173e^-8	1.094e^-4	INTRON CG32428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16202918	X_16202918_SNP [dm3] X_16308885_SNP [dm6]	T	A	4.183e^-8	1.094e^-4	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
2L	18955116	2L_18955116_SNP [dm3] 2L_18955116_SNP [dm6]	G	A	4.187e^-8	1.094e^-4	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955164	2L_18955164_SNP [dm3] 2L_18955164_SNP [dm6]	G	A	4.187e^-8	1.094e^-4	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	10179981	2R_10179981_SNP [dm3] 2R_14292476_SNP [dm6]	A	G	4.219e^-8	1.094e^-4	UTR_3_PRIME Ih INTRON Ih
2R	6102471	2R_6102471_SNP [dm3] 2R_10214966_SNP [dm6]	T	C	4.219e^-8	1.094e^-4	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	671569	2R_671569_DEL [dm3] 2R_4784064_DEL [dm6]	GG	G	4.219e^-8	1.094e^-4	UPSTREAM CR43281 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	3294726	3R_3294726_SNP [dm3] 3R_7469004_SNP [dm6]	A	G	4.219e^-8	1.094e^-4	UPSTREAM CR44934 INTERGENIC
2R	13930585	2R_13930585_SNP [dm3] 2R_18043080_SNP [dm6]	C	A	4.224e^-8	1.094e^-4	UTR_3_PRIME CG5773 DOWNSTREAM CG5770
2L	3821014	2L_3821014_SNP [dm3] 2L_3821014_SNP [dm6]	G	A	4.249e^-8	1.094e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5807661	2L_5807661_SNP [dm3] 2L_5807661_SNP [dm6]	C	T	4.256e^-8	1.094e^-4	INTRON CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3574574	2R_3574574_SNP [dm3] 2R_7687069_SNP [dm6]	G	T	4.256e^-8	1.094e^-4	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17762443	2L_17762443_SNP [dm3] 2L_17762443_SNP [dm6]	T	C	4.278e^-8	1.094e^-4	INTRON CadN
3L	6383442	3L_6383442_SNP [dm3] 3L_6390342_SNP [dm6]	T	C	4.278e^-8	1.094e^-4	INTERGENIC
2R	3519630	2R_3519630_SNP [dm3] 2R_7632125_SNP [dm6]	T	C	4.282e^-8	1.094e^-4	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	7298510	2R_7298510_SNP [dm3] 2R_11411005_SNP [dm6]	C	G	4.282e^-8	1.094e^-4	UPSTREAM CG34054 DOWNSTREAM Drip INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	3222034	3L_3222034_DEL [dm3] 3L_3222034_DEL [dm6]	TAAA	T	4.282e^-8	1.094e^-4	UPSTREAM snoRNA:Or-CD12 & 1 other DOWNSTREAM snoRNA:Or-CD11c & 2 others INTRON RpL28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7184146	3L_7184146_SNP [dm3] 3L_7191046_SNP [dm6]	G	C	4.282e^-8	1.094e^-4	INTERGENIC
3R	3338556	3R_3338556_SNP [dm3] 3R_7512834_SNP [dm6]	T	G	4.282e^-8	1.094e^-4	INTRON alpha-Est8
X	13400656	X_13400656_SNP [dm3] X_13506623_SNP [dm6]	C	T	4.282e^-8	1.094e^-4	INTRON Neto
X	3086012	X_3086012_SNP [dm3] X_3191979_SNP [dm6]	T	C	4.282e^-8	1.094e^-4	INTRON dnc	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5255342	3L_5255342_SNP [dm3] 3L_5262242_SNP [dm6]	C	T	4.284e^-8	1.094e^-4	INTRON shep
3R	3273373	3R_3273373_SNP [dm3] 3R_7447651_SNP [dm6]	C	T	4.284e^-8	1.094e^-4	INTERGENIC
2L	1733081	2L_1733081_SNP [dm3] 2L_1733081_SNP [dm6]	T	A	4.350e^-8	1.106e^-4	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
2L	18525591	2L_18525591_SNP [dm3] 2L_18525591_SNP [dm6]	G	A	4.350e^-8	1.106e^-4	INTRON CG10211
2L	3674143	2L_3674143_SNP [dm3] 2L_3674143_SNP [dm6]	C	T	4.350e^-8	1.106e^-4	INTRON CG34340
2L	3391233	2L_3391233_SNP [dm3] 2L_3391233_SNP [dm6]	C	A	4.420e^-8	1.122e^-4	INTERGENIC
X	6689472	X_6689472_SNP [dm3] X_6795439_SNP [dm6]	A	G	4.457e^-8	1.130e^-4	UPSTREAM C3G INTRON C3G	TF binding site mE1_TFBS_Kr
2R	9463267	2R_9463267_SNP [dm3] 2R_13575762_SNP [dm6]	A	T	4.481e^-8	1.133e^-4	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3R	14929478	3R_14929478_SNP [dm3] 3R_19103756_SNP [dm6]	A	T	4.481e^-8	1.133e^-4	INTRON CG6040
X	20555964	X_20555964_SNP [dm3] X_20684937_SNP [dm6]	C	A	4.544e^-8	1.147e^-4	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5121457	3L_5121457_DEL [dm3] 3L_5128357_DEL [dm6]	TCTATTAAAATTTAAAT...	T	4.552e^-8	1.148e^-4	INTERGENIC
3R	3003656	3R_3003656_SNP [dm3] 3R_7177934_SNP [dm6]	A	T	4.570e^-8	1.148e^-4	INTRON sas
X	20555483	X_20555483_SNP [dm3] X_20684456_SNP [dm6]	G	A	4.570e^-8	1.148e^-4	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	20557995	X_20557995_SNP [dm3] X_20686968_SNP [dm6]	G	A	4.570e^-8	1.148e^-4	INTRON CR43862	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	16203340	X_16203340_INS [dm3] X_16309307_INS [dm6]	G	GG	4.665e^-8	1.170e^-4	UPSTREAM CG9914 DOWNSTREAM CR45485 & 1 other INTERGENIC
2L	9599372	2L_9599372_SNP [dm3] 2L_9599372_SNP [dm6]	A	T	4.783e^-8	1.194e^-4	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10723909	2L_10723909_SNP [dm3] 2L_10723909_SNP [dm6]	T	C	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
2L	10723920	2L_10723920_SNP [dm3] 2L_10723920_SNP [dm6]	C	T	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
2L	10723929	2L_10723929_SNP [dm3] 2L_10723929_SNP [dm6]	G	T	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
2L	10723930	2L_10723930_SNP [dm3] 2L_10723930_SNP [dm6]	A	C	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
2L	10723942	2L_10723942_SNP [dm3] 2L_10723942_SNP [dm6]	G	C	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
2L	10723948	2L_10723948_DEL [dm3] 2L_10723948_DEL [dm6]	CC	C	4.809e^-8	1.194e^-4	UPSTREAM CG6431 INTERGENIC
3L	8454040	3L_8454040_SNP [dm3] 3L_8460940_SNP [dm6]	A	G	4.909e^-8	1.218e^-4	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3111893	2L_3111893_SNP [dm3] 2L_3111893_SNP [dm6]	T	A	5.004e^-8	1.238e^-4	DOWNSTREAM PpD6 INTRON toc
2L	3148492	2L_3148492_SNP [dm3] 2L_3148492_SNP [dm6]	C	T	5.004e^-8	1.238e^-4	SYNONYMOUS_CODING Mad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17289257	3L_17289257_INS [dm3] 3L_17296157_INS [dm6]	A	GTGTG	5.306e^-8	1.311e^-4	INTERGENIC
2R	18822483	2R_18822483_SNP [dm3] 2R_22934960_SNP [dm6]	A	G	5.414e^-8	1.335e^-4	UTR_3_PRIME CG3800 UPSTREAM CG3788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3354573	3R_3354573_DEL [dm3] 3R_7528851_DEL [dm6]	AG	A	5.428e^-8	1.337e^-4	UPSTREAM alpha-Est6 DOWNSTREAM Rtnl2 & 1 other INTERGENIC
2R	2792955	2R_2792955_SNP [dm3] 2R_6905450_SNP [dm6]	A	G	5.455e^-8	1.341e^-4	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13680340	3L_13680340_SNP [dm3] 3L_13687240_SNP [dm6]	A	G	5.460e^-8	1.341e^-4	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7015096	2L_7015096_SNP [dm3] 2L_7015096_SNP [dm6]	C	T	5.636e^-8	1.381e^-4	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17461887	2R_17461887_DEL [dm3] 2R_21574382_DEL [dm6]	TATCCACCC	T	5.636e^-8	1.381e^-4	INTRON CG10440
2L	4937948	2L_4937948_SNP [dm3] 2L_4937948_SNP [dm6]	G	C	5.677e^-8	1.385e^-4	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_sens
2L	4938137	2L_4938137_SNP [dm3] 2L_4938137_SNP [dm6]	A	C	5.677e^-8	1.385e^-4	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4938168	2L_4938168_SNP [dm3] 2L_4938168_SNP [dm6]	A	T	5.677e^-8	1.385e^-4	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18757795	2L_18757795_SNP [dm3] 2L_18757795_SNP [dm6]	C	G	5.843e^-8	1.422e^-4	INTERGENIC
3L	17874708	3L_17874708_SNP [dm3] 3L_17881608_SNP [dm6]	C	A	5.843e^-8	1.422e^-4	INTRON CG7408
2L	4938171	2L_4938171_SNP [dm3] 2L_4938171_SNP [dm6]	T	C	5.885e^-8	1.427e^-4	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4938174	2L_4938174_SNP [dm3] 2L_4938174_SNP [dm6]	T	A	5.885e^-8	1.427e^-4	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4938175	2L_4938175_SNP [dm3] 2L_4938175_SNP [dm6]	C	A	5.885e^-8	1.427e^-4	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4669439	3R_4669439_SNP [dm3] 3R_8843717_SNP [dm6]	A	T	5.960e^-8	1.443e^-4	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7414978	2R_7414978_SNP [dm3] 2R_11527473_SNP [dm6]	G	A	6.016e^-8	1.455e^-4	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	17753533	2L_17753533_SNP [dm3] 2L_17753533_SNP [dm6]	T	C	6.028e^-8	1.456e^-4	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20907318	2R_20907318_INS [dm3] 2R_25019795_INS [dm6]	A	AA	6.306e^-8	1.521e^-4	INTRON uzip
X	810877	X_810877_SNP [dm3] X_916844_SNP [dm6]	G	C	6.464e^-8	1.557e^-4	INTRON CG43867
2L	4236289	2L_4236289_SNP [dm3] 2L_4236289_SNP [dm6]	C	T	6.492e^-8	1.562e^-4	INTERGENIC
2L	4790845	2L_4790845_SNP [dm3] 2L_4790845_SNP [dm6]	C	A	6.545e^-8	1.572e^-4	INTRON CG15630
3L	8512423	3L_8512423_SNP [dm3] 3L_8519323_SNP [dm6]	T	C	6.607e^-8	1.585e^-4	DOWNSTREAM CG6765 INTRON GstO3
3L	10369657	3L_10369657_SNP [dm3] 3L_10376557_SNP [dm6]	G	T	6.616e^-8	1.585e^-4	INTERGENIC
3L	4236775	3L_4236775_SNP [dm3] 3L_4236775_SNP [dm6]	C	G	6.663e^-8	1.594e^-4	UPSTREAM ImpL2 INTERGENIC
2L	3638233	2L_3638233_SNP [dm3] 2L_3638233_SNP [dm6]	C	G	6.703e^-8	1.602e^-4	INTRON for
2R	9176522	2R_9176522_SNP [dm3] 2R_13289017_SNP [dm6]	C	G	6.774e^-8	1.615e^-4	INTRON Dh31-R
3L	10458234	3L_10458234_SNP [dm3] 3L_10465134_SNP [dm6]	C	T	6.774e^-8	1.615e^-4	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTERGENIC
2L	18538670	2L_18538670_SNP [dm3] 2L_18538670_SNP [dm6]	T	G	6.898e^-8	1.642e^-4	INTRON Pde11
2L	5375137	2L_5375137_SNP [dm3] 2L_5375137_SNP [dm6]	C	A	6.982e^-8	1.660e^-4	INTERGENIC
3L	6599580	3L_6599580_SNP [dm3] 3L_6606480_SNP [dm6]	C	T	7.181e^-8	1.700e^-4	NON_SYNONYMOUS_CODING CG8368 UPSTREAM zpg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5618453	2L_5618453_SNP [dm3] 2L_5618453_SNP [dm6]	T	C	7.188e^-8	1.700e^-4	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11637511	2L_11637511_SNP [dm3] 2L_11637511_SNP [dm6]	C	T	7.189e^-8	1.700e^-4	INTERGENIC
2L	12141210	2L_12141210_SNP [dm3] 2L_12141210_SNP [dm6]	G	A	7.189e^-8	1.700e^-4	DOWNSTREAM Gr33a INTERGENIC
2R	17263359	2R_17263359_SNP [dm3] 2R_21375854_SNP [dm6]	G	A	7.276e^-8	1.716e^-4	INTRON cv-2	TF binding site mE1_TFBS_chinmo
2R	4170692	2R_4170692_SNP [dm3] 2R_8283187_SNP [dm6]	C	T	7.276e^-8	1.716e^-4	INTERGENIC
2L	18774350	2L_18774350_INS [dm3] 2L_18774350_INS [dm6]	T	TCTGTGTTTTGGTT...	7.300e^-8	1.720e^-4	UPSTREAM CR43804 INTRON ham	TF binding site BDTNP1_TFBS_twi
2L	6013944	2L_6013944_SNP [dm3] 2L_6013944_SNP [dm6]	A	T	7.323e^-8	1.723e^-4	NON_SYNONYMOUS_CODING H2.0
2R	11456941	2R_11456941_SNP [dm3] 2R_15569436_SNP [dm6]	T	C	7.348e^-8	1.724e^-4	UTR_5_PRIME CG30466 UPSTREAM Flo1 DOWNSTREAM Cdk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4029407	2L_4029407_SNP [dm3] 2L_4029407_SNP [dm6]	C	A	7.357e^-8	1.724e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3928053	2R_3928053_SNP [dm3] 2R_8040548_SNP [dm6]	C	T	7.357e^-8	1.724e^-4	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14719312	X_14719312_SNP [dm3] X_14825279_SNP [dm6]	G	T	7.363e^-8	1.724e^-4	INTRON rut	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17762479	2L_17762479_SNP [dm3] 2L_17762479_SNP [dm6]	G	A	7.474e^-8	1.747e^-4	INTRON CadN
2L	7016933	2L_7016933_SNP [dm3] 2L_7016933_SNP [dm6]	C	T	7.636e^-8	1.783e^-4	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
X	3988580	X_3988580_SNP [dm3] X_4094547_SNP [dm6]	C	G	7.714e^-8	1.799e^-4	INTERGENIC
2L	22881931	2L_22881931_DEL [dm3] 2L_22989199_DEL [dm6]	CACTGC	C	7.812e^-8	1.817e^-4	INTRON cta
3R	3270516	3R_3270516_SNP [dm3] 3R_7444794_SNP [dm6]	A	T	7.812e^-8	1.817e^-4	INTERGENIC
2L	2471536	2L_2471536_DEL [dm3] 2L_2471536_DEL [dm6]	AG	A	7.840e^-8	1.821e^-4	DOWNSTREAM CR45286 INTERGENIC	enhancer FlyBase
X	17320317	X_17320317_SNP [dm3] X_17426284_SNP [dm6]	C	A	7.893e^-8	1.831e^-4	SYNONYMOUS_CODING CG5613 INTRON CG12994
2L	10723863	2L_10723863_SNP [dm3] 2L_10723863_SNP [dm6]	T	A	8.414e^-8	1.950e^-4	UPSTREAM CG6431 INTERGENIC
X	15951755	X_15951755_SNP [dm3] X_16057722_SNP [dm6]	A	C	8.518e^-8	1.971e^-4	INTRON Muc14A
3R	13193866	3R_13193866_SNP [dm3] 3R_17368144_SNP [dm6]	G	A	9.308e^-8	2.152e^-4	INTERGENIC
3L	17606199	3L_17606199_DEL [dm3] 3L_17613099_DEL [dm6]	AA	A	9.393e^-8	2.169e^-4	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1748902	3L_1748902_SNP [dm3] 3L_1748902_SNP [dm6]	C	T	1.042e^-7	2.404e^-4	UTR_5_PRIME CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3345135	3R_3345135_DEL [dm3] 3R_7519413_DEL [dm6]	AA	A	1.085e^-7	2.498e^-4	UTR_5_PRIME Ubc84D DOWNSTREAM alpha-Est7
2R	780423	2R_780423_SNP [dm3] 2R_4892918_SNP [dm6]	C	T	1.123e^-7	2.582e^-4	INTERGENIC	transposable element FlyBase
2R	16523009	2R_16523009_SNP [dm3] 2R_20635504_SNP [dm6]	C	T	1.185e^-7	2.721e^-4	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
X	14708284	X_14708284_SNP [dm3] X_14814251_SNP [dm6]	T	G	1.205e^-7	2.765e^-4	INTRON rut
2R	11457257	2R_11457257_DEL [dm3] 2R_15569752_DEL [dm6]	TT	T	1.284e^-7	2.943e^-4	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3194191	2L_3194191_SNP [dm3] 2L_3194191_SNP [dm6]	G	C	1.299e^-7	2.973e^-4	INTRON CG34393
2L	17778710	2L_17778710_SNP [dm3] 2L_17778710_SNP [dm6]	C	T	1.309e^-7	2.992e^-4	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1247108	2L_1247108_SNP [dm3] 2L_1247108_SNP [dm6]	T	G	1.334e^-7	3.026e^-4	INTERGENIC
2L	5213934	2L_5213934_SNP [dm3] 2L_5213934_SNP [dm6]	A	G	1.334e^-7	3.026e^-4	SYNONYMOUS_CODING CG7742
2L	9942129	2L_9942129_SNP [dm3] 2L_9942129_SNP [dm6]	T	C	1.334e^-7	3.026e^-4	UTR_3_PRIME CG4619 INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15294701	2R_15294701_SNP [dm3] 2R_19407196_SNP [dm6]	A	T	1.334e^-7	3.026e^-4	INTRON hts
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	1.334e^-7	3.026e^-4	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6264393	3L_6264393_SNP [dm3] 3L_6271293_SNP [dm6]	C	G	1.334e^-7	3.026e^-4	INTERGENIC
3L	11527986	3L_11527986_SNP [dm3] 3L_11534886_SNP [dm6]	C	T	1.340e^-7	3.036e^-4	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10816562	2L_10816562_INS [dm3] 2L_10816562_INS [dm6]	A	AGCGCTTATTTCGCA...	1.382e^-7	3.127e^-4	INTRON Nos
3L	14835183	3L_14835183_DEL [dm3] 3L_14842083_DEL [dm6]	AGTTCCGA	A	1.388e^-7	3.137e^-4	INTRON CG17839
2R	14826164	2R_14826164_SNP [dm3] 2R_18938659_SNP [dm6]	A	C	1.399e^-7	3.158e^-4	INTRON sano
2L	9127690	2L_9127690_SNP [dm3] 2L_9127690_SNP [dm6]	T	C	1.863e^-7	4.201e^-4	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
2L	18742741	2L_18742741_SNP [dm3] 2L_18742741_SNP [dm6]	T	A	1.908e^-7	4.287e^-4	INTERGENIC
2L	18742753	2L_18742753_SNP [dm3] 2L_18742753_SNP [dm6]	A	G	1.908e^-7	4.287e^-4	INTERGENIC
X	4130351	X_4130351_SNP [dm3] X_4236318_SNP [dm6]	G	A	1.908e^-7	4.287e^-4	INTERGENIC
3L	3947712	3L_3947712_SNP [dm3] 3L_3947712_SNP [dm6]	T	A	1.921e^-7	4.310e^-4	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
2R	18723062	2R_18723062_SNP [dm3] 2R_22835539_SNP [dm6]	G	C	1.937e^-7	4.340e^-4	NON_SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265	TF binding site mE1_TFBS_HSA
2L	18355915	2L_18355915_SNP [dm3] 2L_18355915_SNP [dm6]	G	A	1.946e^-7	4.355e^-4	DOWNSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25155128	3R_25155128_SNP [dm3] 3R_29329406_SNP [dm6]	C	G	1.981e^-7	4.429e^-4	INTERGENIC
2R	780415	2R_780415_SNP [dm3] 2R_4892910_SNP [dm6]	T	G	2.061e^-7	4.601e^-4	INTERGENIC	transposable element FlyBase
3L	11042801	3L_11042801_INS [dm3] 3L_11049701_INS [dm6]	A	AA	2.094e^-7	4.670e^-4	UPSTREAM CG43693 & 1 other INTRON CG43693
3L	5331049	3L_5331049_SNP [dm3] 3L_5337949_SNP [dm6]	C	G	2.107e^-7	4.681e^-4	INTERGENIC
X	14964247	X_14964247_SNP [dm3] X_15070214_SNP [dm6]	A	G	2.107e^-7	4.681e^-4	UTR_3_PRIME Lsd-2
X	18429309	X_18429309_SNP [dm3] X_18535276_SNP [dm6]	A	T	2.107e^-7	4.681e^-4	UTR_5_PRIME Bx INTRON Bx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19544188	3R_19544188_SNP [dm3] 3R_23718466_SNP [dm6]	G	T	2.120e^-7	4.705e^-4	UPSTREAM nau DOWNSTREAM CG10232 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26044524	3R_26044524_SNP [dm3] 3R_30218802_SNP [dm6]	A	G	2.144e^-7	4.745e^-4	INTERGENIC
X	4646903	X_4646903_SNP [dm3] X_4752870_SNP [dm6]	C	T	2.144e^-7	4.745e^-4	INTERGENIC
2R	9440565	2R_9440565_SNP [dm3] 2R_13553060_SNP [dm6]	C	A	2.146e^-7	4.745e^-4	SYNONYMOUS_CODING CG33156 UPSTREAM CG33156
X	21157498	X_21157498_INS [dm3] X_21286471_INS [dm6]	C	TTAGGCAGTAA...	2.163e^-7	4.777e^-4	INTRON CG1494
2L	11214815	2L_11214815_SNP [dm3] 2L_11214815_SNP [dm6]	T	A	2.255e^-7	4.974e^-4	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	7753768	2R_7753768_SNP [dm3] 2R_11866263_SNP [dm6]	A	G	2.309e^-7	5.062e^-4	SPLICE_SITE_REGION Damm UPSTREAM CR42532 INTRON Damm
2L	10889438	2L_10889438_SNP [dm3] 2L_10889438_SNP [dm6]	C	G	2.311e^-7	5.062e^-4	UPSTREAM CG14071 INTERGENIC
2L	3111876	2L_3111876_SNP [dm3] 2L_3111876_SNP [dm6]	T	C	2.311e^-7	5.062e^-4	DOWNSTREAM PpD6 INTRON toc
2L	3938532	2L_3938532_SNP [dm3] 2L_3938532_SNP [dm6]	T	A	2.311e^-7	5.062e^-4	INTRON fred
2L	3948951	2L_3948951_SNP [dm3] 2L_3948951_SNP [dm6]	G	T	2.311e^-7	5.062e^-4	INTRON fred
X	16395481	X_16395481_SNP [dm3] X_16501448_SNP [dm6]	T	G	2.311e^-7	5.062e^-4	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15850501	X_15850501_SNP [dm3] X_15956468_SNP [dm6]	G	T	2.319e^-7	5.072e^-4	INTRON mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9688734	2R_9688734_SNP [dm3] 2R_13801229_SNP [dm6]	G	A	2.397e^-7	5.238e^-4	INTRON Cpr50Cb
3L	17547248	3L_17547248_SNP [dm3] 3L_17554148_SNP [dm6]	G	T	2.457e^-7	5.350e^-4	SYNONYMOUS_CODING CycT	TF binding site BDTNP1_TFBS_dl
3L	17551042	3L_17551042_SNP [dm3] 3L_17557942_SNP [dm6]	C	T	2.457e^-7	5.350e^-4	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17551271	3L_17551271_SNP [dm3] 3L_17558171_SNP [dm6]	A	G	2.457e^-7	5.350e^-4	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	678592	2R_678592_DEL [dm3] 2R_4791087_DEL [dm6]	TT	T	2.468e^-7	5.366e^-4	INTERGENIC	transposable element FlyBase
2R	12481343	2R_12481343_SNP [dm3] 2R_16593838_SNP [dm6]	C	A	2.741e^-7	5.953e^-4	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16066792	2R_16066792_SNP [dm3] 2R_20179287_SNP [dm6]	C	T	2.885e^-7	6.255e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	18736420	2L_18736420_SNP [dm3] 2L_18736420_SNP [dm6]	C	T	2.890e^-7	6.255e^-4	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18777435	2L_18777435_SNP [dm3] 2L_18777435_SNP [dm6]	C	T	2.890e^-7	6.255e^-4	INTRON ham	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8348202	2L_8348202_SNP [dm3] 2L_8348202_SNP [dm6]	C	T	2.948e^-7	6.372e^-4	INTRON CG7778
2L	18742724	2L_18742724_SNP [dm3] 2L_18742724_SNP [dm6]	G	T	3.067e^-7	6.623e^-4	INTERGENIC
2L	17091801	2L_17091801_DEL [dm3] 2L_17091801_DEL [dm6]	AA	A	3.314e^-7	7.147e^-4	INTERGENIC
2R	15413539	2R_15413539_SNP [dm3] 2R_19526034_SNP [dm6]	A	C	3.499e^-7	7.538e^-4	UTR_3_PRIME sm
2R	17723624	2R_17723624_SNP [dm3] 2R_21836119_SNP [dm6]	G	A	3.608e^-7	7.763e^-4	SYNONYMOUS_CODING CG4377
2R	18727465	2R_18727465_SNP [dm3] 2R_22839942_SNP [dm6]	T	G	3.619e^-7	7.778e^-4	UPSTREAM CG9826 DOWNSTREAM CG9825 INTERGENIC
2L	1246881	2L_1246881_SNP [dm3] 2L_1246881_SNP [dm6]	C	G	3.639e^-7	7.812e^-4	INTERGENIC
2L	18742706	2L_18742706_SNP [dm3] 2L_18742706_SNP [dm6]	T	A	3.703e^-7	7.874e^-4	INTERGENIC
2L	18742715	2L_18742715_INS [dm3] 2L_18742715_INS [dm6]	G	GCTGCACAAGTTAAATCTTA...	3.703e^-7	7.874e^-4	INTERGENIC
2L	18742794	2L_18742794_SNP [dm3] 2L_18742794_SNP [dm6]	T	C	3.703e^-7	7.874e^-4	INTERGENIC
2L	18742805	2L_18742805_SNP [dm3] 2L_18742805_SNP [dm6]	G	A	3.703e^-7	7.874e^-4	INTERGENIC
2L	18746743	2L_18746743_SNP [dm3] 2L_18746743_SNP [dm6]	G	A	3.703e^-7	7.874e^-4	INTERGENIC
2L	18746837	2L_18746837_SNP [dm3] 2L_18746837_SNP [dm6]	T	G	3.703e^-7	7.874e^-4	INTERGENIC
2R	17575477	2R_17575477_SNP [dm3] 2R_21687972_SNP [dm6]	A	T	3.703e^-7	7.874e^-4	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	6381770	3L_6381770_SNP [dm3] 3L_6388670_SNP [dm6]	G	C	3.703e^-7	7.874e^-4	INTERGENIC
2L	4103974	2L_4103974_SNP [dm3] 2L_4103974_SNP [dm6]	C	G	3.732e^-7	7.929e^-4	INTRON ed
2L	2315366	2L_2315366_SNP [dm3] 2L_2315366_SNP [dm6]	T	A	4.202e^-7	8.271e^-4	INTRON CG9967 & 1 other
3L	16743087	3L_16743087_SNP [dm3] 3L_16749987_SNP [dm6]	A	G	4.345e^-7	8.271e^-4	INTERGENIC
2L	4937782	2L_4937782_SNP [dm3] 2L_4937782_SNP [dm6]	T	A	4.374e^-7	8.271e^-4	NON_SYNONYMOUS_CODING Sgs1
2L	4937790	2L_4937790_SNP [dm3] 2L_4937790_SNP [dm6]	T	C	4.374e^-7	8.271e^-4	SYNONYMOUS_CODING Sgs1
2L	9126964	2L_9126964_SNP [dm3] 2L_9126964_SNP [dm6]	C	T	4.655e^-7	8.271e^-4	UTR_5_PRIME CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb
2R	9343467	2R_9343467_DEL [dm3] 2R_13455962_DEL [dm6]	AT	A	4.683e^-7	8.271e^-4	INTRON arr
2R	16564611	2R_16564611_SNP [dm3] 2R_20677106_SNP [dm6]	T	C	4.966e^-7	8.271e^-4	INTERGENIC
2L	18791797	2L_18791797_SNP [dm3] 2L_18791797_SNP [dm6]	A	C	5.003e^-7	8.271e^-4	INTRON ham	transposable element FlyBase
X	14459990	X_14459990_SNP [dm3] X_14565957_SNP [dm6]	A	T	5.070e^-7	8.271e^-4	INTERGENIC
X	14460120	X_14460120_INS [dm3] X_14566087_INS [dm6]	A	ATTGAT	5.070e^-7	8.271e^-4	INTERGENIC
X	14460128	X_14460128_SNP [dm3] X_14566095_SNP [dm6]	G	T	5.070e^-7	8.271e^-4	INTERGENIC
X	14460133	X_14460133_SNP [dm3] X_14566100_SNP [dm6]	T	A	5.070e^-7	8.271e^-4	INTERGENIC
X	14460138	X_14460138_SNP [dm3] X_14566105_SNP [dm6]	C	T	5.070e^-7	8.271e^-4	INTERGENIC
2L	4937765	2L_4937765_SNP [dm3] 2L_4937765_SNP [dm6]	G	A	5.085e^-7	8.271e^-4	NON_SYNONYMOUS_CODING Sgs1
2R	12688097	2R_12688097_SNP [dm3] 2R_16800592_SNP [dm6]	T	C	5.211e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14659323	2R_14659323_SNP [dm3] 2R_18771818_SNP [dm6]	T	C	5.211e^-7	8.271e^-4	SYNONYMOUS_CODING Mctp
2R	14733648	2R_14733648_SNP [dm3] 2R_18846143_SNP [dm6]	C	T	5.211e^-7	8.271e^-4	DOWNSTREAM CG15100 INTRON CG15099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17456262	2R_17456262_SNP [dm3] 2R_21568757_SNP [dm6]	G	A	5.591e^-7	8.271e^-4	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17114031	2R_17114031_SNP [dm3] 2R_21226526_SNP [dm6]	G	T	5.657e^-7	8.271e^-4	INTRON ASPP
2L	18770448	2L_18770448_INS [dm3] 2L_18770448_INS [dm6]	C	CCC	5.848e^-7	8.271e^-4	INTRON ham
2L	18770449	2L_18770449_DEL [dm3] 2L_18770449_DEL [dm6]	TA	T	5.848e^-7	8.271e^-4	INTRON ham
2L	18793814	2L_18793814_SNP [dm3] 2L_18793814_SNP [dm6]	G	A	5.848e^-7	8.271e^-4	UPSTREAM ham INTERGENIC	TF binding site mE1_TFBS_Trl
2L	18804189	2L_18804189_SNP [dm3] 2L_18804189_SNP [dm6]	C	A	5.848e^-7	8.271e^-4	DOWNSTREAM CG43814 INTERGENIC
2L	18830377	2L_18830377_SNP [dm3] 2L_18830377_SNP [dm6]	T	G	5.848e^-7	8.271e^-4	SYNONYMOUS_CODING CG17597 UPSTREAM ScpX	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2666546	2L_2666546_DEL [dm3] 2L_2666546_DEL [dm6]	TAGTACAT	T	5.876e^-7	8.271e^-4	DOWNSTREAM CG9879 INTERGENIC
2L	3135303	2L_3135303_SNP [dm3] 2L_3135303_SNP [dm6]	G	T	5.876e^-7	8.271e^-4	INTRON toc
2L	18746428	2L_18746428_SNP [dm3] 2L_18746428_SNP [dm6]	G	A	5.893e^-7	8.271e^-4	INTERGENIC
2L	18805381	2L_18805381_SNP [dm3] 2L_18805381_SNP [dm6]	A	G	5.893e^-7	8.271e^-4	UPSTREAM CG43814 DOWNSTREAM CR43817 INTERGENIC
2L	3825948	2L_3825948_SNP [dm3] 2L_3825948_SNP [dm6]	G	T	6.361e^-7	8.271e^-4	SYNONYMOUS_CODING slp1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3864697	2L_3864697_SNP [dm3] 2L_3864697_SNP [dm6]	T	C	6.590e^-7	8.271e^-4	SYNONYMOUS_CODING CG3964
2R	17575476	2R_17575476_SNP [dm3] 2R_21687971_SNP [dm6]	T	A	6.631e^-7	8.271e^-4	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	17454937	2R_17454937_SNP [dm3] 2R_21567432_SNP [dm6]	A	G	6.704e^-7	8.271e^-4	INTRON CG10440
2R	79445	2R_79445_DEL [dm3] 2R_4191940_DEL [dm6]	CAAG	C	7.033e^-7	8.271e^-4	INTERGENIC
2L	12746266	2L_12746266_SNP [dm3] 2L_12746266_SNP [dm6]	A	C	7.395e^-7	8.271e^-4	INTERGENIC
2L	9114081	2L_9114081_SNP [dm3] 2L_9114081_SNP [dm6]	C	T	7.395e^-7	8.271e^-4	DOWNSTREAM Or30a INTERGENIC
2R	10522409	2R_10522409_SNP [dm3] 2R_14634904_SNP [dm6]	G	A	7.395e^-7	8.271e^-4	INTERGENIC
2R	10522426	2R_10522426_MNP [dm3] 2R_14634921_MNP [dm6]	TTT	CAC	7.395e^-7	8.271e^-4	INTERGENIC
2R	14781658	2R_14781658_SNP [dm3] 2R_18894153_SNP [dm6]	T	C	7.395e^-7	8.271e^-4	INTRON sano
2R	7406446	2R_7406446_SNP [dm3] 2R_11518941_SNP [dm6]	A	C	7.395e^-7	8.271e^-4	INTERGENIC
3L	4419401	3L_4419401_SNP [dm3] 3L_4419401_SNP [dm6]	C	A	7.395e^-7	8.271e^-4	INTRON DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4419407	3L_4419407_SNP [dm3] 3L_4419407_SNP [dm6]	A	T	7.395e^-7	8.271e^-4	INTRON DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5093216	3L_5093216_SNP [dm3] 3L_5093216_SNP [dm6]	T	A	7.395e^-7	8.271e^-4	INTERGENIC
3L	5094049	3L_5094049_SNP [dm3] 3L_5094049_SNP [dm6]	C	T	7.395e^-7	8.271e^-4	INTERGENIC
3L	5094122	3L_5094122_SNP [dm3] 3L_5094122_SNP [dm6]	T	A	7.395e^-7	8.271e^-4	INTERGENIC
3L	9562194	3L_9562194_DEL [dm3] 3L_9569094_DEL [dm6]	TCCCC	T	7.395e^-7	8.271e^-4	INTRON CG42673
3L	9563134	3L_9563134_SNP [dm3] 3L_9570034_SNP [dm6]	A	G	7.395e^-7	8.271e^-4	INTRON CG42673
3L	16388103	3L_16388103_SNP [dm3] 3L_16395003_SNP [dm6]	A	G	7.498e^-7	8.271e^-4	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2L	14537749	2L_14537749_SNP [dm3] 2L_14537749_SNP [dm6]	C	A	8.027e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	14387464	2R_14387464_SNP [dm3] 2R_18499959_SNP [dm6]	T	G	8.106e^-7	8.271e^-4	INTERGENIC
2L	10094576	2L_10094576_SNP [dm3] 2L_10094576_SNP [dm6]	G	C	8.256e^-7	8.271e^-4	INTRON CG44153 & 1 other
2L	10100478	2L_10100478_SNP [dm3] 2L_10100478_SNP [dm6]	C	G	8.256e^-7	8.271e^-4	INTRON CG34109 & 1 other
2L	10100480	2L_10100480_SNP [dm3] 2L_10100480_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTRON CG34109 & 1 other
2L	10197324	2L_10197324_SNP [dm3] 2L_10197324_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON Sur
2L	10198442	2L_10198442_SNP [dm3] 2L_10198442_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	DOWNSTREAM Ripalpha INTRON Sur
2L	10270775	2L_10270775_SNP [dm3] 2L_10270775_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	NON_SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	10270776	2L_10270776_SNP [dm3] 2L_10270776_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	NON_SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	10443038	2L_10443038_SNP [dm3] 2L_10443038_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	UPSTREAM CR45375 INTRON loh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	10514841	2L_10514841_SNP [dm3] 2L_10514841_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTRON Fatp & 1 other
2L	10589172	2L_10589172_SNP [dm3] 2L_10589172_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	INTRON Trim9
2L	10589181	2L_10589181_SNP [dm3] 2L_10589181_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTRON Trim9
2L	10589260	2L_10589260_SNP [dm3] 2L_10589260_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON Trim9
2L	1091777	2L_1091777_SNP [dm3] 2L_1091777_SNP [dm6]	G	T	8.256e^-7	8.271e^-4	INTRON CG4629
2L	10966729	2L_10966729_DEL [dm3] 2L_10966729_DEL [dm6]	CTG	C	8.256e^-7	8.271e^-4	UTR_5_PRIME CG33129 UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_dl
2L	11219035	2L_11219035_SNP [dm3] 2L_11219035_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11607455	2L_11607455_DEL [dm3] 2L_11607455_DEL [dm6]	AA	A	8.256e^-7	8.271e^-4	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	11954468	2L_11954468_SNP [dm3] 2L_11954468_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	UPSTREAM bft EXON CR43314
2L	12135047	2L_12135047_SNP [dm3] 2L_12135047_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12135110	2L_12135110_SNP [dm3] 2L_12135110_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12628550	2L_12628550_SNP [dm3] 2L_12628550_SNP [dm6]	G	C	8.256e^-7	8.271e^-4	DOWNSTREAM nub INTRON Ref2
2L	12901242	2L_12901242_SNP [dm3] 2L_12901242_SNP [dm6]	G	C	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13044054	2L_13044054_SNP [dm3] 2L_13044054_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTRON CG9932
2L	1325559	2L_1325559_SNP [dm3] 2L_1325559_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTERGENIC
2L	14013513	2L_14013513_SNP [dm3] 2L_14013513_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UPSTREAM bgm INTRON bgm	TF binding site BDTNP1_TFBS_dl
2L	14078542	2L_14078542_SNP [dm3] 2L_14078542_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	INTRON nAChRalpha5
2L	14435012	2L_14435012_SNP [dm3] 2L_14435012_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14435013	2L_14435013_SNP [dm3] 2L_14435013_SNP [dm6]	T	G	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14518005	2L_14518005_DEL [dm3] 2L_14518005_DEL [dm6]	GT	G	8.256e^-7	8.271e^-4	UPSTREAM tRNA:G3:35Ba DOWNSTREAM tRNA:G3:35Bb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14518828	2L_14518828_SNP [dm3] 2L_14518828_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	14537306	2L_14537306_DEL [dm3] 2L_14537306_DEL [dm6]	ACTGT	A	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14627113	2L_14627113_SNP [dm3] 2L_14627113_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON osp	TF binding site BDTNP1_TFBS_dl
2L	14629683	2L_14629683_SNP [dm3] 2L_14629683_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	INTRON osp
2L	14629684	2L_14629684_SNP [dm3] 2L_14629684_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	INTRON osp
2L	15616365	2L_15616365_SNP [dm3] 2L_15616365_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	UPSTREAM CG11865 & 1 other INTERGENIC
2L	15637464	2L_15637464_SNP [dm3] 2L_15637464_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTERGENIC
2L	15736187	2L_15736187_DEL [dm3] 2L_15736187_DEL [dm6]	GGG	A	8.256e^-7	8.271e^-4	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15878404	2L_15878404_SNP [dm3] 2L_15878404_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG7653
2L	15878424	2L_15878424_SNP [dm3] 2L_15878424_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	NON_SYNONYMOUS_CODING CG7653
2L	16171555	2L_16171555_SNP [dm3] 2L_16171555_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON Ca-alpha1D
2L	16202248	2L_16202248_SNP [dm3] 2L_16202248_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	16202259	2L_16202259_SNP [dm3] 2L_16202259_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	16256643	2L_16256643_SNP [dm3] 2L_16256643_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UPSTREAM PRL-1 INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	16256733	2L_16256733_INS [dm3] 2L_16256733_INS [dm6]	C	CGTAAACACA	8.256e^-7	8.271e^-4	UPSTREAM PRL-1 & 1 other INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	16256759	2L_16256759_SNP [dm3] 2L_16256759_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	UPSTREAM PRL-1 & 1 other INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	16353277	2L_16353277_SNP [dm3] 2L_16353277_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG4455 UPSTREAM chif & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16375031	2L_16375031_SNP [dm3] 2L_16375031_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTERGENIC
2L	16375114	2L_16375114_SNP [dm3] 2L_16375114_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTERGENIC
2L	16692418	2L_16692418_SNP [dm3] 2L_16692418_SNP [dm6]	G	T	8.256e^-7	8.271e^-4	INTRON grp
2L	16757942	2L_16757942_SNP [dm3] 2L_16757942_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
2L	16758146	2L_16758146_SNP [dm3] 2L_16758146_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UTR_3_PRIME yellow-b DOWNSTREAM ppk17
2L	16791834	2L_16791834_SNP [dm3] 2L_16791834_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG17928	TF binding site mE1_TFBS_Trl
2L	17546576	2L_17546576_SNP [dm3] 2L_17546576_SNP [dm6]	A	C	8.256e^-7	8.271e^-4	UPSTREAM CR45697 INTERGENIC
2L	18388103	2L_18388103_SNP [dm3] 2L_18388103_SNP [dm6]	A	C	8.256e^-7	8.271e^-4	DOWNSTREAM Fas3 INTRON Fas3
2L	18404861	2L_18404861_SNP [dm3] 2L_18404861_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	DOWNSTREAM CR44487 INTERGENIC
2L	18405951	2L_18405951_SNP [dm3] 2L_18405951_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	INTERGENIC
2L	18471014	2L_18471014_SNP [dm3] 2L_18471014_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	UPSTREAM mir-100 EXON let-7-C
2L	18471019	2L_18471019_SNP [dm3] 2L_18471019_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	UPSTREAM mir-100 EXON let-7-C
2L	18471024	2L_18471024_SNP [dm3] 2L_18471024_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	UPSTREAM mir-100 EXON let-7-C
2L	18471029	2L_18471029_SNP [dm3] 2L_18471029_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UPSTREAM mir-100 EXON let-7-C
2L	18471032	2L_18471032_SNP [dm3] 2L_18471032_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	UPSTREAM mir-100 EXON let-7-C
2L	18577742	2L_18577742_SNP [dm3] 2L_18577742_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON Pde11
2L	18581339	2L_18581339_SNP [dm3] 2L_18581339_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	INTRON Pde11
2L	18632416	2L_18632416_SNP [dm3] 2L_18632416_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON MESR3
2L	18642842	2L_18642842_SNP [dm3] 2L_18642842_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18646525	2L_18646525_SNP [dm3] 2L_18646525_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTRON MESR3	TF binding site mE1_TFBS_inv
2L	20138723	2L_20138723_INS [dm3] 2L_20138723_INS [dm6]	G	GA	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2066182	2L_2066182_SNP [dm3] 2L_2066182_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	INTRON dpr3
2L	2066312	2L_2066312_SNP [dm3] 2L_2066312_SNP [dm6]	A	G	8.256e^-7	8.271e^-4	INTRON dpr3
2L	2066314	2L_2066314_SNP [dm3] 2L_2066314_SNP [dm6]	A	C	8.256e^-7	8.271e^-4	INTRON dpr3
2L	2066325	2L_2066325_SNP [dm3] 2L_2066325_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	INTRON dpr3
2L	2082542	2L_2082542_DEL [dm3] 2L_2082542_DEL [dm6]	TCTG	C	8.256e^-7	8.271e^-4	UPSTREAM CR44055 DOWNSTREAM CR44808 INTRON dpr3
2L	21829930	2L_21829930_SNP [dm3] 2L_21829930_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTRON tsh	TF binding site BDTNP1_TFBS_dl
2L	2675205	2L_2675205_SNP [dm3] 2L_2675205_SNP [dm6]	G	C	8.256e^-7	8.271e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2781317	2L_2781317_SNP [dm3] 2L_2781317_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	UTR_3_PRIME Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2791541	2L_2791541_SNP [dm3] 2L_2791541_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	INTRON Syt1
2L	2864629	2L_2864629_SNP [dm3] 2L_2864629_SNP [dm6]	T	A	8.256e^-7	8.271e^-4	INTRON CG2991
2L	2864663	2L_2864663_SNP [dm3] 2L_2864663_SNP [dm6]	T	G	8.256e^-7	8.271e^-4	INTRON CG2991
2L	2866847	2L_2866847_SNP [dm3] 2L_2866847_SNP [dm6]	C	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG2991
2L	2895663	2L_2895663_SNP [dm3] 2L_2895663_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3248118	2L_3248118_DEL [dm3] 2L_3248118_DEL [dm6]	TAT	C	8.256e^-7	8.271e^-4	INTERGENIC
2L	3248124	2L_3248124_SNP [dm3] 2L_3248124_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	INTERGENIC
2L	3248886	2L_3248886_SNP [dm3] 2L_3248886_SNP [dm6]	A	T	8.256e^-7	8.271e^-4	INTERGENIC
2L	3248938	2L_3248938_SNP [dm3] 2L_3248938_SNP [dm6]	T	C	8.256e^-7	8.271e^-4	INTERGENIC
2L	3249108	2L_3249108_SNP [dm3] 2L_3249108_SNP [dm6]	C	T	8.256e^-7	8.271e^-4	INTERGENIC
2L	3513479	2L_3513479_SNP [dm3] 2L_3513479_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	SPLICE_SITE_REGION CG33123 INTRON CG33123	TF binding site mE1_TFBS_cad
2L	3513727	2L_3513727_SNP [dm3] 2L_3513727_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad
2L	3513742	2L_3513742_SNP [dm3] 2L_3513742_SNP [dm6]	G	A	8.256e^-7	8.271e^-4	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

pc_MB_Alpha_Short phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results