DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.993e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

17021 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14624481	2L_14624481_SNP [dm3] 2L_14624481_SNP [dm6]	C	A	1.520e^-229	1.870e^-224	INTRON osp
2L	5501535	2L_5501535_SNP [dm3] 2L_5501535_SNP [dm6]	C	T	1.520e^-229	1.870e^-224	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15320369	3L_15320369_SNP [dm3] 3L_15327269_SNP [dm6]	G	A	1.520e^-229	1.870e^-224	INTERGENIC
3L	6799080	3L_6799080_SNP [dm3] 3L_6805980_SNP [dm6]	C	T	1.520e^-229	1.870e^-224	INTERGENIC	regulatory region REDfly_CRMs
3L	7617312	3L_7617312_SNP [dm3] 3L_7624212_SNP [dm6]	A	G	1.520e^-229	1.870e^-224	INTRON CG33275
3L	9704881	3L_9704881_SNP [dm3] 3L_9711781_SNP [dm6]	G	A	1.520e^-229	1.870e^-224	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10284789	3R_10284789_SNP [dm3] 3R_14459067_SNP [dm6]	T	C	1.520e^-229	1.870e^-224	INTRON cv-c
3R	10306475	3R_10306475_SNP [dm3] 3R_14480753_SNP [dm6]	G	T	1.520e^-229	1.870e^-224	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14120070	3R_14120070_SNP [dm3] 3R_18294348_SNP [dm6]	G	A	1.520e^-229	1.870e^-224	INTRON l_3_05822
3R	4948144	3R_4948144_SNP [dm3] 3R_9122422_SNP [dm6]	T	A	1.520e^-229	1.870e^-224	INTRON pum
3R	8023893	3R_8023893_SNP [dm3] 3R_12198171_SNP [dm6]	T	A	1.520e^-229	1.870e^-224	NON_SYNONYMOUS_CODING CG3809
3R	9260976	3R_9260976_DEL [dm3] 3R_13435254_DEL [dm6]	TT	T	1.520e^-229	1.870e^-224	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9295369	3R_9295369_SNP [dm3] 3R_13469647_SNP [dm6]	G	A	1.520e^-229	1.870e^-224	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17183395	X_17183395_SNP [dm3] X_17289362_SNP [dm6]	A	T	1.520e^-229	1.870e^-224	INTRON CG5445 & 1 other
X	17390493	X_17390493_SNP [dm3] X_17496460_SNP [dm6]	C	G	1.520e^-229	1.870e^-224	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_Kr
2L	3012467	2L_3012467_SNP [dm3] 2L_3012467_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	INTRON CG17265	TF binding site mE1_TFBS_inv
2L	6990941	2L_6990941_SNP [dm3] 2L_6990941_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	INTRON uif
2L	7603981	2L_7603981_DEL [dm3] 2L_7603981_DEL [dm6]	TA	C	1.031e^-226	5.141e^-222	UPSTREAM CR45370 INTERGENIC
3L	10523616	3L_10523616_SNP [dm3] 3L_10530516_SNP [dm6]	C	A	1.031e^-226	5.141e^-222	INTRON A2bp1
3L	17998418	3L_17998418_SNP [dm3] 3L_18005318_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	4533670	3L_4533670_SNP [dm3] 3L_4533670_SNP [dm6]	G	A	1.031e^-226	5.141e^-222	INTRON CG11353
3L	5914024	3L_5914024_SNP [dm3] 3L_5920924_SNP [dm6]	C	A	1.031e^-226	5.141e^-222	INTRON CG10483
3L	6969243	3L_6969243_SNP [dm3] 3L_6976143_SNP [dm6]	C	A	1.031e^-226	5.141e^-222	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
3L	9705181	3L_9705181_SNP [dm3] 3L_9712081_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	15387030	3R_15387030_SNP [dm3] 3R_19561308_SNP [dm6]	G	C	1.031e^-226	5.141e^-222	INTRON Dys
3R	15387057	3R_15387057_SNP [dm3] 3R_19561335_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	INTRON Dys
3R	7887333	3R_7887333_SNP [dm3] 3R_12061611_SNP [dm6]	A	G	1.031e^-226	5.141e^-222	SPLICE_SITE_REGION CG14740 INTRON CG14740
3R	9251019	3R_9251019_SNP [dm3] 3R_13425297_SNP [dm6]	G	T	1.031e^-226	5.141e^-222	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9259592	3R_9259592_SNP [dm3] 3R_13433870_SNP [dm6]	C	T	1.031e^-226	5.141e^-222	INTRON yrt	TF binding site BDTNP1_TFBS_dl
3R	9285003	3R_9285003_SNP [dm3] 3R_13459281_SNP [dm6]	T	G	1.031e^-226	5.141e^-222	INTRON CR17025 & 1 other
3R	9297101	3R_9297101_SNP [dm3] 3R_13471379_SNP [dm6]	T	A	1.031e^-226	5.141e^-222	INTERGENIC
X	16081350	X_16081350_SNP [dm3] X_16187317_SNP [dm6]	A	G	1.031e^-226	5.141e^-222	INTERGENIC
X	16423220	X_16423220_SNP [dm3] X_16529187_SNP [dm6]	A	C	1.031e^-226	5.141e^-222	INTRON para
X	17135251	X_17135251_SNP [dm3] X_17241218_SNP [dm6]	G	A	1.031e^-226	5.141e^-222	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
X	18117476	X_18117476_SNP [dm3] X_18223443_SNP [dm6]	G	A	1.031e^-226	5.141e^-222	INTRON CG33639
X	7359185	X_7359185_SNP [dm3] X_7465152_SNP [dm6]	G	A	1.031e^-226	5.141e^-222	INTERGENIC
X	8735695	X_8735695_SNP [dm3] X_8841662_SNP [dm6]	A	T	1.031e^-226	5.141e^-222	INTRON CG12075
2R	14978508	2R_14978508_SNP [dm3] 2R_19091003_SNP [dm6]	C	A	9.499e^-224	3.925e^-219	NON_SYNONYMOUS_CODING 5-HT1A
3R	14059688	3R_14059688_SNP [dm3] 3R_18233966_SNP [dm6]	G	A	9.499e^-224	3.925e^-219	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	23085806	3R_23085806_SNP [dm3] 3R_27260084_SNP [dm6]	G	C	9.499e^-224	3.925e^-219	SPLICE_SITE_REGION woc UPSTREAM woc INTRON woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8721821	3R_8721821_SNP [dm3] 3R_12896099_SNP [dm6]	G	C	9.499e^-224	3.925e^-219	INTERGENIC
X	10106652	X_10106652_SNP [dm3] X_10212619_SNP [dm6]	C	A	9.499e^-224	3.925e^-219	UPSTREAM l_1_G0230 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	16843319	3R_16843319_SNP [dm3] 3R_21017597_SNP [dm6]	C	A	9.629e^-224	3.925e^-219	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	6969060	3L_6969060_SNP [dm3] 3L_6975960_SNP [dm6]	A	T	9.632e^-224	3.925e^-219	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
3L	5682891	3L_5682891_SNP [dm3] 3L_5689791_SNP [dm6]	C	T	9.786e^-224	3.925e^-219	INTRON sif
3R	26691331	3R_26691331_SNP [dm3] 3R_30865609_SNP [dm6]	A	G	9.786e^-224	3.925e^-219	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	10289962	3R_10289962_SNP [dm3] 3R_14464240_SNP [dm6]	T	G	1.064e^-223	4.006e^-219	INTRON cv-c
3R	3771429	3R_3771429_SNP [dm3] 3R_7945707_SNP [dm6]	C	T	1.064e^-223	4.006e^-219	INTRON dsx
X	17390487	X_17390487_SNP [dm3] X_17496454_SNP [dm6]	T	C	1.064e^-223	4.006e^-219	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_Kr
3L	24124183	3L_24124183_SNP [dm3] 3L_24131083_SNP [dm6]	T	G	3.968e^-222	1.331e^-217	INTRON Snap25
3L	9138509	3L_9138509_DEL [dm3] 3L_9145409_DEL [dm6]	TAT	T	3.968e^-222	1.331e^-217	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	14094838	3R_14094838_SNP [dm3] 3R_18269116_SNP [dm6]	A	T	3.968e^-222	1.331e^-217	INTRON CG18599	TF binding site mE1_TFBS_inv
X	12366491	X_12366491_INS [dm3] X_12472458_INS [dm6]	T	TAGATC	3.968e^-222	1.331e^-217	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12369054	X_12369054_SNP [dm3] X_12475021_SNP [dm6]	G	C	3.968e^-222	1.331e^-217	UPSTREAM CG42258 INTRON CG42258
X	18591176	X_18591176_SNP [dm3] X_18697143_SNP [dm6]	G	T	3.968e^-222	1.331e^-217	INTERGENIC
3R	9339324	3R_9339324_DEL [dm3] 3R_13513602_DEL [dm6]	AACACTACACAATACAGGA...	A	5.184e^-221	1.514e^-216	INTERGENIC
2L	4314167	2L_4314167_SNP [dm3] 2L_4314167_SNP [dm6]	A	G	5.233e^-221	1.514e^-216	INTRON tutl
2L	4314192	2L_4314192_DEL [dm3] 2L_4314192_DEL [dm6]	AA	A	5.233e^-221	1.514e^-216	INTRON tutl
3L	1040899	3L_1040899_SNP [dm3] 3L_1040899_SNP [dm6]	C	T	5.279e^-221	1.514e^-216	INTRON bab1
3R	10354959	3R_10354959_SNP [dm3] 3R_14529237_SNP [dm6]	T	A	5.279e^-221	1.514e^-216	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9306119	3R_9306119_SNP [dm3] 3R_13480397_SNP [dm6]	C	T	5.279e^-221	1.514e^-216	INTERGENIC
3L	1678548	3L_1678548_DEL [dm3] 3L_1678548_DEL [dm6]	TTG	T	5.312e^-221	1.514e^-216	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2L	12187929	2L_12187929_SNP [dm3] 2L_12187929_SNP [dm6]	C	T	5.581e^-221	1.514e^-216	INTRON aret
2L	7418680	2L_7418680_SNP [dm3] 2L_7418680_SNP [dm6]	T	G	5.581e^-221	1.514e^-216	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9227429	2L_9227429_SNP [dm3] 2L_9227429_SNP [dm6]	T	C	5.581e^-221	1.514e^-216	INTRON tai
2R	12026562	2R_12026562_SNP [dm3] 2R_16139057_SNP [dm6]	C	T	5.581e^-221	1.514e^-216	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
3L	10524828	3L_10524828_SNP [dm3] 3L_10531728_SNP [dm6]	A	G	5.581e^-221	1.514e^-216	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	4755038	3L_4755038_SNP [dm3] 3L_4755038_SNP [dm6]	C	T	5.581e^-221	1.514e^-216	UPSTREAM CR43881 INTRON RhoGEF64C
3R	14264044	3R_14264044_SNP [dm3] 3R_18438322_SNP [dm6]	T	C	4.846e^-220	1.230e^-215	INTRON fru
3R	16112783	3R_16112783_SNP [dm3] 3R_20287061_SNP [dm6]	A	G	4.846e^-220	1.230e^-215	INTRON cic	TF binding site BDTNP1_TFBS_dl
2L	2834264	2L_2834264_SNP [dm3] 2L_2834264_SNP [dm6]	T	C	4.869e^-220	1.230e^-215	DOWNSTREAM CG3119 INTERGENIC
2R	7455567	2R_7455567_SNP [dm3] 2R_11568062_SNP [dm6]	C	G	4.869e^-220	1.230e^-215	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	16435941	3L_16435941_SNP [dm3] 3L_16442841_SNP [dm6]	G	A	4.869e^-220	1.230e^-215	INTRON CG33158 & 1 other
2R	8295737	2R_8295737_SNP [dm3] 2R_12408232_SNP [dm6]	C	T	4.445e^-216	1.079e^-211	SYNONYMOUS_CODING Cpr49Ag UPSTREAM CG30050
3L	14621503	3L_14621503_SNP [dm3] 3L_14628403_SNP [dm6]	T	A	4.445e^-216	1.079e^-211	SPLICE_SITE_REGION RecQ5 SYNONYMOUS_CODING RecQ5 UTR_3_PRIME RecQ5 DOWNSTREAM CG9628
3R	14092269	3R_14092269_SNP [dm3] 3R_18266547_SNP [dm6]	A	C	4.445e^-216	1.079e^-211	INTERGENIC
X	17007384	X_17007384_SNP [dm3] X_17113351_SNP [dm6]	T	G	4.548e^-216	1.079e^-211	INTRON CG5004
3L	1044627	3L_1044627_SNP [dm3] 3L_1044627_SNP [dm6]	G	A	4.572e^-216	1.079e^-211	INTRON bab1
2L	14802321	2L_14802321_SNP [dm3] 2L_14802321_SNP [dm6]	T	C	4.622e^-216	1.079e^-211	UPSTREAM CG33308 INTERGENIC
2L	18161911	2L_18161911_SNP [dm3] 2L_18161911_SNP [dm6]	G	A	5.075e^-216	1.156e^-211	INTRON CG42750
3R	24778165	3R_24778165_SNP [dm3] 3R_28952443_SNP [dm6]	G	C	5.075e^-216	1.156e^-211	INTRON CG14521
3R	17843666	3R_17843666_SNP [dm3] 3R_22017944_SNP [dm6]	A	G	1.522e^-214	3.425e^-210	INTRON CG6439
2L	15442394	2L_15442394_SNP [dm3] 2L_15442394_SNP [dm6]	T	G	1.636e^-214	3.593e^-210	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9248790	3R_9248790_SNP [dm3] 3R_13423068_SNP [dm6]	C	A	1.636e^-214	3.593e^-210	SYNONYMOUS_CODING Ir87a
2R	18006260	2R_18006260_SNP [dm3] 2R_22118755_SNP [dm6]	C	T	1.666e^-214	3.616e^-210	INTRON Vrp1
3R	9283518	3R_9283518_SNP [dm3] 3R_13457796_SNP [dm6]	T	C	1.773e^-214	3.804e^-210	SYNONYMOUS_CODING CG14372 EXON CR17025
X	17277115	X_17277115_SNP [dm3] X_17383082_SNP [dm6]	T	G	1.994e^-213	4.228e^-209	INTERGENIC
2R	17688679	2R_17688679_SNP [dm3] 2R_21801174_SNP [dm6]	A	C	2.096e^-213	4.345e^-209	UPSTREAM CG4386 INTERGENIC
X	4296533	X_4296533_SNP [dm3] X_4402500_SNP [dm6]	A	T	2.096e^-213	4.345e^-209	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	7487142	2R_7487142_INS [dm3] 2R_11599637_INS [dm6]	T	TT	2.154e^-213	4.415e^-209	SPLICE_SITE_REGION tou UTR_5_PRIME tou INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	7044513	2R_7044513_SNP [dm3] 2R_11157008_SNP [dm6]	C	T	2.277e^-213	4.566e^-209	INTRON CG13229
2R	8296274	2R_8296274_SNP [dm3] 2R_12408769_SNP [dm6]	G	C	2.277e^-213	4.566e^-209	UPSTREAM CG30050 DOWNSTREAM Cpr49Ag INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21103935	X_21103935_SNP [dm3] X_21232908_SNP [dm6]	T	G	1.696e^-212	3.364e^-208	DOWNSTREAM tRNA:R:19F INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	14015190	2L_14015190_SNP [dm3] 2L_14015190_SNP [dm6]	C	G	1.864e^-212	3.658e^-208	INTRON bgm
2L	4452991	2L_4452991_SNP [dm3] 2L_4452991_SNP [dm6]	T	C	2.120e^-208	4.077e^-204	UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23542569	3R_23542569_SNP [dm3] 3R_27716847_SNP [dm6]	C	T	2.122e^-208	4.077e^-204	INTERGENIC
X	720503	X_720503_SNP [dm3] X_826470_SNP [dm6]	C	T	2.197e^-208	4.179e^-204	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14268085	3R_14268085_SNP [dm3] 3R_18442363_SNP [dm6]	T	G	2.348e^-208	4.377e^-204	INTRON fru
2L	16487107	2L_16487107_SNP [dm3] 2L_16487107_SNP [dm6]	C	T	2.349e^-208	4.377e^-204	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22977050	3R_22977050_SNP [dm3] 3R_27151328_SNP [dm6]	A	T	2.736e^-208	4.961e^-204	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22977051	3R_22977051_SNP [dm3] 3R_27151329_SNP [dm6]	A	T	2.736e^-208	4.961e^-204	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18855591	2R_18855591_DEL [dm3] 2R_22968068_DEL [dm6]	AA	A	2.743e^-208	4.961e^-204	INTERGENIC
3R	16872599	3R_16872599_SNP [dm3] 3R_21046877_SNP [dm6]	G	A	3.305e^-208	5.920e^-204	DOWNSTREAM CG7079 INTRON CG31207
2R	17771822	2R_17771822_SNP [dm3] 2R_21884317_SNP [dm6]	A	T	6.774e^-207	1.181e^-202	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17771824	2R_17771824_SNP [dm3] 2R_21884319_SNP [dm6]	A	G	6.774e^-207	1.181e^-202	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23952952	3L_23952952_DEL [dm3] 3L_23959852_DEL [dm6]	ATAAA	A	6.855e^-207	1.181e^-202	INTRON CG40470
2R	14872047	2R_14872047_SNP [dm3] 2R_18984542_SNP [dm6]	C	T	6.893e^-207	1.181e^-202	INTERGENIC
2R	11790450	2R_11790450_SNP [dm3] 2R_15902945_SNP [dm6]	A	G	6.912e^-207	1.181e^-202	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	11840203	3R_11840203_INS [dm3] 3R_16014481_INS [dm6]	A	GTG	7.507e^-207	1.271e^-202	INTRON GATAe
3L	6389169	3L_6389169_SNP [dm3] 3L_6396069_SNP [dm6]	A	T	7.660e^-207	1.285e^-202	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19848929	3R_19848929_INS [dm3] 3R_24023207_INS [dm6]	C	CC	7.856e^-207	1.306e^-202	INTRON KrT95D
X	16539871	X_16539871_INS [dm3] X_16645838_INS [dm6]	T	TT	7.863e^-206	1.294e^-201	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	17189342	X_17189342_DEL [dm3] X_17295309_DEL [dm6]	TT	T	7.926e^-206	1.294e^-201	UTR_5_PRIME Fim INTRON CG5445 & 1 other
2R	1154157	2R_1154157_SNP [dm3] 2R_5266652_SNP [dm6]	G	T	8.532e^-206	1.381e^-201	INTRON d4	TF binding site mE1_TFBS_sens
3R	9416682	3R_9416682_DEL [dm3] 3R_13590960_DEL [dm6]	ATTTTAAAA	A	1.523e^-200	2.444e^-196	DOWNSTREAM CG14369 INTERGENIC
3R	17064803	3R_17064803_DEL [dm3] 3R_21239081_DEL [dm6]	TCTGC	T	1.647e^-200	2.619e^-196	INTERGENIC	regulatory region REDfly_CRMs
2L	7861634	2L_7861634_SNP [dm3] 2L_7861634_SNP [dm6]	C	T	5.740e^-199	8.975e^-195	UPSTREAM TwdlE INTERGENIC
2L	7861640	2L_7861640_SNP [dm3] 2L_7861640_SNP [dm6]	C	G	5.740e^-199	8.975e^-195	UPSTREAM TwdlE INTERGENIC
2L	18232402	2L_18232402_SNP [dm3] 2L_18232402_SNP [dm6]	G	T	3.005e^-198	4.659e^-194	INTRON CG42750
3R	25501446	3R_25501446_SNP [dm3] 3R_29675724_SNP [dm6]	A	C	3.055e^-198	4.697e^-194	UTR_5_PRIME Cap-D2 UPSTREAM Bub3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	17117750	2R_17117750_SNP [dm3] 2R_21230245_SNP [dm6]	G	T	3.015e^-195	4.597e^-191	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18277222	2L_18277222_INS [dm3] 2L_18277222_INS [dm6]	A	AACAAATTAAACATA...	3.455e^-195	5.225e^-191	INTERGENIC
3R	22158675	3R_22158675_SNP [dm3] 3R_26332953_SNP [dm6]	C	G	3.660e^-195	5.490e^-191	INTRON CG33970
3R	22977059	3R_22977059_SNP [dm3] 3R_27151337_SNP [dm6]	A	T	3.706e^-195	5.514e^-191	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8679346	2L_8679346_INS [dm3] 2L_8679346_INS [dm6]	T	TT	3.828e^-195	5.650e^-191	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2L	17881996	2L_17881996_SNP [dm3] 2L_17881996_SNP [dm6]	C	T	4.603e^-191	6.740e^-187	INTERGENIC
2R	20209481	2R_20209481_SNP [dm3] 2R_24321958_SNP [dm6]	A	C	6.186e^-191	8.987e^-187	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1170762	2R_1170762_SNP [dm3] 2R_5283257_SNP [dm6]	A	C	1.215e^-190	1.746e^-186	INTRON d4
2R	13717362	2R_13717362_INS [dm3] 2R_17829857_INS [dm6]	A	AA	1.221e^-190	1.746e^-186	INTRON grh	regulatory region REDfly_CRMs
2L	15151918	2L_15151918_DEL [dm3] 2L_15151918_DEL [dm6]	GAACTGGAAATGG...	G	1.821e^-184	2.584e^-180	INTERGENIC
2R	18723941	2R_18723941_SNP [dm3] 2R_22836418_SNP [dm6]	C	T	1.979e^-177	2.787e^-173	SYNONYMOUS_CODING CG12490 UPSTREAM CG9825
3R	25375343	3R_25375343_SNP [dm3] 3R_29549621_SNP [dm6]	T	C	1.822e^-157	2.547e^-153	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4742903	2L_4742903_SNP [dm3] 2L_4742903_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTRON CG15630
2L	7604000	2L_7604000_SNP [dm3] 2L_7604000_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	UPSTREAM CR45370 INTERGENIC
2R	12647601	2R_12647601_SNP [dm3] 2R_16760096_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647649	2R_12647649_SNP [dm3] 2R_16760144_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647682	2R_12647682_SNP [dm3] 2R_16760177_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13497809	2R_13497809_SNP [dm3] 2R_17610304_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON CG10936
2R	14013416	2R_14013416_INS [dm3] 2R_18125911_INS [dm6]	G	GA	5.764e^-31	4.028e^-27	UPSTREAM Spn55B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15880887	2R_15880887_SNP [dm3] 2R_19993382_SNP [dm6]	T	G	5.764e^-31	4.028e^-27	INTERGENIC
2R	15881174	2R_15881174_SNP [dm3] 2R_19993669_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTERGENIC
2R	17764407	2R_17764407_SNP [dm3] 2R_21876902_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTRON Fili
2R	17764424	2R_17764424_SNP [dm3] 2R_21876919_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON Fili
2R	17765864	2R_17765864_SNP [dm3] 2R_21878359_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	INTRON Fili	TF binding site mE1_TFBS_cnc
2R	18619063	2R_18619063_DEL [dm3] 2R_22731558_DEL [dm6]	TTGGTGTGT	T	5.764e^-31	4.028e^-27	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	DOWNSTREAM tou INTERGENIC
2R	7692170	2R_7692170_INS [dm3] 2R_11804665_INS [dm6]	A	AATATAAG	5.764e^-31	4.028e^-27	INTRON ths	TF binding site mE1_TFBS_cad
2R	7692172	2R_7692172_SNP [dm3] 2R_11804667_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON ths	TF binding site mE1_TFBS_cad
2R	7692177	2R_7692177_SNP [dm3] 2R_11804672_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	INTRON ths	TF binding site mE1_TFBS_cad
3L	1045454	3L_1045454_DEL [dm3] 3L_1045454_DEL [dm6]	TCGT	T	5.764e^-31	4.028e^-27	INTRON bab1
3L	10523690	3L_10523690_SNP [dm3] 3L_10530590_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON A2bp1
3L	10523696	3L_10523696_SNP [dm3] 3L_10530596_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTRON A2bp1
3L	11070540	3L_11070540_SNP [dm3] 3L_11077440_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11070546	3L_11070546_SNP [dm3] 3L_11077446_SNP [dm6]	C	A	5.764e^-31	4.028e^-27	INTRON CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11632100	3L_11632100_SNP [dm3] 3L_11639000_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON CG32091
3L	11648902	3L_11648902_SNP [dm3] 3L_11655802_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON CG32085
3L	11649102	3L_11649102_SNP [dm3] 3L_11656002_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	UPSTREAM mir-274 INTRON CG32085
3L	11650143	3L_11650143_SNP [dm3] 3L_11657043_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	DOWNSTREAM mir-274 INTRON CG32085
3L	11653801	3L_11653801_SNP [dm3] 3L_11660701_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON CG32085
3L	13701758	3L_13701758_SNP [dm3] 3L_13708658_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON bru-3
3L	16008986	3L_16008986_DEL [dm3] 3L_16015886_DEL [dm6]	AATTGTGTACTTGAATATGT...	G	5.764e^-31	4.028e^-27	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	16020946	3L_16020946_INS [dm3] 3L_16027846_INS [dm6]	G	TT	5.764e^-31	4.028e^-27	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16020964	3L_16020964_SNP [dm3] 3L_16027864_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17498542	3L_17498542_SNP [dm3] 3L_17505442_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	18004977	3L_18004977_SNP [dm3] 3L_18011877_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	INTRON Eip75B
3L	18004979	3L_18004979_SNP [dm3] 3L_18011879_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	INTRON Eip75B
3L	19009632	3L_19009632_SNP [dm3] 3L_19016532_SNP [dm6]	A	C	5.764e^-31	4.028e^-27	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20968891	3L_20968891_SNP [dm3] 3L_20975791_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	INTERGENIC
3L	2114056	3L_2114056_SNP [dm3] 3L_2114056_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON sls
3L	2156771	3L_2156771_SNP [dm3] 3L_2156771_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3L	3812863	3L_3812863_SNP [dm3] 3L_3812863_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	5009690	3L_5009690_SNP [dm3] 3L_5009690_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON Con	TF binding site BDTNP1_TFBS_twi
3L	5277624	3L_5277624_SNP [dm3] 3L_5284524_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTERGENIC
3L	6867591	3L_6867591_SNP [dm3] 3L_6874491_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTERGENIC
3L	6967834	3L_6967834_SNP [dm3] 3L_6974734_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTRON Galphai
3L	6968581	3L_6968581_SNP [dm3] 3L_6975481_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
3L	6969153	3L_6969153_SNP [dm3] 3L_6976053_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
3L	6969318	3L_6969318_SNP [dm3] 3L_6976218_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
3L	9703729	3L_9703729_SNP [dm3] 3L_9710629_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	UTR_3_PRIME SH3PX1 DOWNSTREAM CG16711
3L	9704592	3L_9704592_SNP [dm3] 3L_9711492_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	SPLICE_SITE_REGION SH3PX1 INTRON SH3PX1	TF binding site mE1_TFBS_cad
3L	9704905	3L_9704905_SNP [dm3] 3L_9711805_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9704992	3L_9704992_SNP [dm3] 3L_9711892_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	14065835	3R_14065835_SNP [dm3] 3R_18240113_SNP [dm6]	G	T	5.764e^-31	4.028e^-27	DOWNSTREAM repo INTRON CG7156	TF binding site mE1_TFBS_sens
3R	14072904	3R_14072904_SNP [dm3] 3R_18247182_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14075676	3R_14075676_SNP [dm3] 3R_18249954_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UTR_3_PRIME 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14075775	3R_14075775_SNP [dm3] 3R_18250053_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UTR_3_PRIME 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14092066	3R_14092066_SNP [dm3] 3R_18266344_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	14092960	3R_14092960_SNP [dm3] 3R_18267238_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	UPSTREAM CG18599 INTERGENIC
3R	16315234	3R_16315234_SNP [dm3] 3R_20489512_SNP [dm6]	T	G	5.764e^-31	4.028e^-27	INTERGENIC
3R	16951193	3R_16951193_SNP [dm3] 3R_21125471_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON slmb	TF binding site BDTNP1_TFBS_dl
3R	17021889	3R_17021889_SNP [dm3] 3R_21196167_SNP [dm6]	G	T	5.764e^-31	4.028e^-27	INTRON SNF4Agamma
3R	19535978	3R_19535978_SNP [dm3] 3R_23710256_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG10301
3R	19659373	3R_19659373_SNP [dm3] 3R_23833651_SNP [dm6]	C	A	5.764e^-31	4.028e^-27	INTRON CG34355
3R	20991101	3R_20991101_SNP [dm3] 3R_25165379_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTERGENIC
3R	21385781	3R_21385781_SNP [dm3] 3R_25560059_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON msi
3R	23501324	3R_23501324_SNP [dm3] 3R_27675602_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25250322	3R_25250322_SNP [dm3] 3R_29424600_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING Ptp99A
3R	25544276	3R_25544276_SNP [dm3] 3R_29718554_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	UPSTREAM CG15506 INTERGENIC	regulatory region REDfly_CRMs
3R	6498604	3R_6498604_SNP [dm3] 3R_10672882_SNP [dm6]	A	C	5.764e^-31	4.028e^-27	INTERGENIC
3R	6504909	3R_6504909_SNP [dm3] 3R_10679187_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON CG14688
3R	9255378	3R_9255378_SNP [dm3] 3R_13429656_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING yrt UTR_3_PRIME yrt
3R	9255572	3R_9255572_SNP [dm3] 3R_13429850_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON yrt
3R	9255994	3R_9255994_SNP [dm3] 3R_13430272_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	NON_SYNONYMOUS_CODING yrt INTRON yrt
3R	9257000	3R_9257000_SNP [dm3] 3R_13431278_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING yrt
3R	9258375	3R_9258375_SNP [dm3] 3R_13432653_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING yrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9259503	3R_9259503_SNP [dm3] 3R_13433781_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTRON yrt	TF binding site BDTNP1_TFBS_dl
3R	9260850	3R_9260850_SNP [dm3] 3R_13435128_SNP [dm6]	C	A	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260866	3R_9260866_SNP [dm3] 3R_13435144_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260877	3R_9260877_SNP [dm3] 3R_13435155_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260944	3R_9260944_DEL [dm3] 3R_13435222_DEL [dm6]	ATTTCCAAAAATTAAACAA...	G	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260965	3R_9260965_DEL [dm3] 3R_13435243_DEL [dm6]	GGAAGT	G	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260972	3R_9260972_SNP [dm3] 3R_13435250_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	9260988	3R_9260988_SNP [dm3] 3R_13435266_SNP [dm6]	A	C	5.764e^-31	4.028e^-27	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9264207	3R_9264207_SNP [dm3] 3R_13438485_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	DOWNSTREAM CR42756 INTERGENIC
3R	9265417	3R_9265417_SNP [dm3] 3R_13439695_SNP [dm6]	G	T	5.764e^-31	4.028e^-27	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9265922	3R_9265922_DEL [dm3] 3R_13440200_DEL [dm6]	GGATCGGACGGGGAATCCCC...	G	5.764e^-31	4.028e^-27	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9269275	3R_9269275_SNP [dm3] 3R_13443553_SNP [dm6]	C	A	5.764e^-31	4.028e^-27	EXON CR45679	TF binding site mE1_TFBS_inv
3R	9278270	3R_9278270_SNP [dm3] 3R_13452548_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	INTRON CG14372
3R	9278380	3R_9278380_SNP [dm3] 3R_13452658_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON CG14372
3R	9279818	3R_9279818_SNP [dm3] 3R_13454096_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	INTRON CG14372
3R	9282013	3R_9282013_SNP [dm3] 3R_13456291_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	INTRON CR17025 & 1 other
3R	9282079	3R_9282079_SNP [dm3] 3R_13456357_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTRON CR17025 & 1 other
3R	9282808	3R_9282808_SNP [dm3] 3R_13457086_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG14372 INTRON CR17025
3R	9285488	3R_9285488_SNP [dm3] 3R_13459766_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	9285635	3R_9285635_SNP [dm3] 3R_13459913_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG14372 INTRON CR17025	TF binding site mE1_TFBS_HSA
3R	9287634	3R_9287634_SNP [dm3] 3R_13461912_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9288054	3R_9288054_SNP [dm3] 3R_13462332_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad
3R	9296153	3R_9296153_SNP [dm3] 3R_13470431_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297089	3R_9297089_SNP [dm3] 3R_13471367_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297102	3R_9297102_INS [dm3] 3R_13471380_INS [dm6]	A	AGTAACTAGTCATCGCAGAT...	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297112	3R_9297112_SNP [dm3] 3R_13471390_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297122	3R_9297122_SNP [dm3] 3R_13471400_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297141	3R_9297141_SNP [dm3] 3R_13471419_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	9297926	3R_9297926_SNP [dm3] 3R_13472204_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	9299692	3R_9299692_SNP [dm3] 3R_13473970_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTERGENIC
3R	9301647	3R_9301647_SNP [dm3] 3R_13475925_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTERGENIC
3R	9304394	3R_9304394_SNP [dm3] 3R_13478672_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	EXON CR45589
3R	9307747	3R_9307747_SNP [dm3] 3R_13482025_SNP [dm6]	G	C	5.764e^-31	4.028e^-27	INTERGENIC
3R	9309211	3R_9309211_SNP [dm3] 3R_13483489_SNP [dm6]	T	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTERGENIC
3R	9319912	3R_9319912_SNP [dm3] 3R_13494190_SNP [dm6]	C	A	5.764e^-31	4.028e^-27	INTERGENIC
3R	9360538	3R_9360538_SNP [dm3] 3R_13534816_SNP [dm6]	T	C	5.764e^-31	4.028e^-27	INTERGENIC
3R	9370316	3R_9370316_SNP [dm3] 3R_13544594_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG31337
X	12367086	X_12367086_SNP [dm3] X_12473053_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12367301	X_12367301_SNP [dm3] X_12473268_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12367694	X_12367694_SNP [dm3] X_12473661_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	INTRON CG42258
X	12415103	X_12415103_SNP [dm3] X_12521070_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	12415460	X_12415460_SNP [dm3] X_12521427_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	12416242	X_12416242_SNP [dm3] X_12522209_SNP [dm6]	C	G	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG43921 UTR_5_PRIME CG43921
X	12416762	X_12416762_SNP [dm3] X_12522729_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	SPLICE_SITE_REGION CG43921 INTRON CG43921
X	12416775	X_12416775_SNP [dm3] X_12522742_SNP [dm6]	A	C	5.764e^-31	4.028e^-27	INTRON CG43921
X	16961941	X_16961941_SNP [dm3] X_17067908_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING CG43077 DOWNSTREAM CG8949
X	17130146	X_17130146_INS [dm3] X_17236113_INS [dm6]	C	CTGT	5.764e^-31	4.028e^-27	INTRON f
X	17135090	X_17135090_DEL [dm3] X_17241057_DEL [dm6]	ACTTCGACTCCGAGTTACGA...	A	5.764e^-31	4.028e^-27	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
X	17135121	X_17135121_DEL [dm3] X_17241088_DEL [dm6]	TCTTGTGGCA	T	5.764e^-31	4.028e^-27	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
X	17135193	X_17135193_SNP [dm3] X_17241160_SNP [dm6]	C	T	5.764e^-31	4.028e^-27	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
X	17135262	X_17135262_SNP [dm3] X_17241229_SNP [dm6]	A	T	5.764e^-31	4.028e^-27	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
X	17181557	X_17181557_SNP [dm3] X_17287524_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
X	18116695	X_18116695_SNP [dm3] X_18222662_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTRON CG33639	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18764271	X_18764271_SNP [dm3] X_18870238_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	INTRON CG34401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5478022	X_5478022_SNP [dm3] X_5583989_SNP [dm6]	G	A	5.764e^-31	4.028e^-27	INTERGENIC	TF binding site mE1_TFBS_Kr
X	7001151	X_7001151_SNP [dm3] X_7107118_SNP [dm6]	A	G	5.764e^-31	4.028e^-27	UTR_3_PRIME fz4 DOWNSTREAM CG8300
X	8735672	X_8735672_SNP [dm3] X_8841639_SNP [dm6]	G	T	5.764e^-31	4.028e^-27	INTRON CG12075
2L	7604039	2L_7604039_SNP [dm3] 2L_7604039_SNP [dm6]	G	A	4.894e^-30	2.696e^-26	UPSTREAM CR45370 INTERGENIC
2L	371565	2L_371565_SNP [dm3] 2L_371565_SNP [dm6]	A	T	5.096e^-30	2.696e^-26	INTERGENIC
2R	7455429	2R_7455429_SNP [dm3] 2R_11567924_SNP [dm6]	T	A	5.096e^-30	2.696e^-26	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	8780072	2R_8780072_SNP [dm3] 2R_12892567_SNP [dm6]	A	C	5.096e^-30	2.696e^-26	INTRON vg
3L	1030573	3L_1030573_SNP [dm3] 3L_1030573_SNP [dm6]	G	A	5.096e^-30	2.696e^-26	INTRON trio
3L	1033285	3L_1033285_SNP [dm3] 3L_1033285_SNP [dm6]	A	T	5.096e^-30	2.696e^-26	INTRON trio	TF binding site BDTNP1_TFBS_dl
3L	10523482	3L_10523482_SNP [dm3] 3L_10530382_SNP [dm6]	A	C	5.096e^-30	2.696e^-26	INTRON A2bp1
3L	11653646	3L_11653646_SNP [dm3] 3L_11660546_SNP [dm6]	T	A	5.096e^-30	2.696e^-26	INTRON CG32085
3L	12469008	3L_12469008_SNP [dm3] 3L_12475908_SNP [dm6]	G	T	5.096e^-30	2.696e^-26	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3L	16418608	3L_16418608_SNP [dm3] 3L_16425508_SNP [dm6]	C	T	5.096e^-30	2.696e^-26	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	9731421	3R_9731421_SNP [dm3] 3R_13905699_SNP [dm6]	A	C	5.096e^-30	2.696e^-26	INTERGENIC
X	16608288	X_16608288_SNP [dm3] X_16714255_SNP [dm6]	T	C	5.096e^-30	2.696e^-26	UTR_3_PRIME CG13008 DOWNSTREAM CG34325
2R	15296602	2R_15296602_SNP [dm3] 2R_19409097_SNP [dm6]	A	G	5.112e^-30	2.696e^-26	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2R	15314088	2R_15314088_SNP [dm3] 2R_19426583_SNP [dm6]	T	A	5.112e^-30	2.696e^-26	INTRON CalpA
2R	15314092	2R_15314092_SNP [dm3] 2R_19426587_SNP [dm6]	C	T	5.112e^-30	2.696e^-26	INTRON CalpA
2R	15315244	2R_15315244_SNP [dm3] 2R_19427739_SNP [dm6]	A	C	5.112e^-30	2.696e^-26	SYNONYMOUS_CODING CalpA
X	4359527	X_4359527_SNP [dm3] X_4465494_SNP [dm6]	G	C	5.112e^-30	2.696e^-26	INTRON bi & 1 other
X	4359575	X_4359575_SNP [dm3] X_4465542_SNP [dm6]	A	C	5.112e^-30	2.696e^-26	INTRON bi & 1 other
2R	7692179	2R_7692179_SNP [dm3] 2R_11804674_SNP [dm6]	T	C	5.124e^-30	2.696e^-26	INTRON ths	TF binding site mE1_TFBS_cad
3R	9259866	3R_9259866_SNP [dm3] 3R_13434144_SNP [dm6]	G	A	5.124e^-30	2.696e^-26	SYNONYMOUS_CODING yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17763193	2R_17763193_DEL [dm3] 2R_21875688_DEL [dm6]	GG	G	5.185e^-30	2.696e^-26	INTRON Fili
3R	14062686	3R_14062686_SNP [dm3] 3R_18236964_SNP [dm6]	G	A	5.230e^-30	2.696e^-26	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	16092295	X_16092295_SNP [dm3] X_16198262_SNP [dm6]	C	A	5.230e^-30	2.696e^-26	INTERGENIC
2L	15730000	2L_15730000_SNP [dm3] 2L_15730000_SNP [dm6]	A	G	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21867435	2L_21867435_SNP [dm3] 2L_21867435_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON CR44917 EXON CR44919 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22079802	2L_22079802_SNP [dm3] 2L_22079802_SNP [dm6]	A	T	5.282e^-30	2.696e^-26	NON_SYNONYMOUS_CODING ttm3
2L	5458815	2L_5458815_SNP [dm3] 2L_5458815_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	5458913	2L_5458913_SNP [dm3] 2L_5458913_SNP [dm6]	A	G	5.282e^-30	2.696e^-26	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7765617	2L_7765617_SNP [dm3] 2L_7765617_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	UTR_3_PRIME CG7196
2L	7768177	2L_7768177_SNP [dm3] 2L_7768177_SNP [dm6]	T	G	5.282e^-30	2.696e^-26	INTRON CG7191
2L	7770872	2L_7770872_SNP [dm3] 2L_7770872_SNP [dm6]	A	G	5.282e^-30	2.696e^-26	INTRON CG7191
2L	8360834	2L_8360834_SNP [dm3] 2L_8360834_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8362658	2L_8362658_SNP [dm3] 2L_8362658_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	8365588	2L_8365588_SNP [dm3] 2L_8365588_SNP [dm6]	C	A	5.282e^-30	2.696e^-26	NON_SYNONYMOUS_CODING CSN8 UPSTREAM RpS13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9227418	2L_9227418_SNP [dm3] 2L_9227418_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON tai
2L	9236515	2L_9236515_SNP [dm3] 2L_9236515_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	9237049	2L_9237049_SNP [dm3] 2L_9237049_SNP [dm6]	T	A	5.282e^-30	2.696e^-26	UPSTREAM tRNA:CR31885 INTRON tai
2L	9237120	2L_9237120_INS [dm3] 2L_9237120_INS [dm6]	C	CCA	5.282e^-30	2.696e^-26	UPSTREAM tRNA:CR31885 INTRON tai
2L	9237128	2L_9237128_SNP [dm3] 2L_9237128_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	UPSTREAM tRNA:CR31885 INTRON tai
2L	9237148	2L_9237148_SNP [dm3] 2L_9237148_SNP [dm6]	T	G	5.282e^-30	2.696e^-26	UPSTREAM tRNA:CR31885 INTRON tai
2L	9237172	2L_9237172_SNP [dm3] 2L_9237172_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	UPSTREAM tRNA:CR31885 INTRON tai
2L	9518162	2L_9518162_SNP [dm3] 2L_9518162_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	SPLICE_SITE_REGION CG33298 INTRON CG33298
2R	10637534	2R_10637534_SNP [dm3] 2R_14750029_SNP [dm6]	T	A	5.282e^-30	2.696e^-26	UTR_3_PRIME AttB DOWNSTREAM Rpn6
2R	10796985	2R_10796985_SNP [dm3] 2R_14909480_SNP [dm6]	G	C	5.282e^-30	2.696e^-26	INTRON CG10249
2R	12025619	2R_12025619_SNP [dm3] 2R_16138114_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	UTR_3_PRIME spin UPSTREAM Got1 DOWNSTREAM spin
2R	14369168	2R_14369168_SNP [dm3] 2R_18481663_SNP [dm6]	A	G	5.282e^-30	2.696e^-26	INTRON CG30116
2R	14617637	2R_14617637_SNP [dm3] 2R_18730132_SNP [dm6]	C	A	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING List INTRON Hs3st-A
2R	14617724	2R_14617724_SNP [dm3] 2R_18730219_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING List INTRON Hs3st-A
2R	15816344	2R_15816344_SNP [dm3] 2R_19928839_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	INTERGENIC
2R	5205292	2R_5205292_SNP [dm3] 2R_9317787_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7458250	2R_7458250_SNP [dm3] 2R_11570745_SNP [dm6]	A	T	5.282e^-30	2.696e^-26	INTERGENIC
2R	7459571	2R_7459571_SNP [dm3] 2R_11572066_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTERGENIC
2R	7459953	2R_7459953_SNP [dm3] 2R_11572448_SNP [dm6]	A	C	5.282e^-30	2.696e^-26	INTERGENIC
2R	7461023	2R_7461023_SNP [dm3] 2R_11573518_SNP [dm6]	A	T	5.282e^-30	2.696e^-26	INTERGENIC
2R	7463541	2R_7463541_SNP [dm3] 2R_11576036_SNP [dm6]	C	A	5.282e^-30	2.696e^-26	INTERGENIC
2R	7463551	2R_7463551_SNP [dm3] 2R_11576046_SNP [dm6]	G	C	5.282e^-30	2.696e^-26	INTERGENIC
2R	7463602	2R_7463602_SNP [dm3] 2R_11576097_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	INTERGENIC
2R	7464264	2R_7464264_SNP [dm3] 2R_11576759_SNP [dm6]	C	A	5.282e^-30	2.696e^-26	DOWNSTREAM tou INTERGENIC
2R	7692176	2R_7692176_SNP [dm3] 2R_11804671_SNP [dm6]	C	A	5.282e^-30	2.696e^-26	INTRON ths	TF binding site mE1_TFBS_cad
2R	8295689	2R_8295689_SNP [dm3] 2R_12408184_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING Cpr49Ag UPSTREAM CG30050
2R	8366109	2R_8366109_SNP [dm3] 2R_12478604_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON Dh44-R2
3L	11632106	3L_11632106_SNP [dm3] 3L_11639006_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON CG32091
3L	11642444	3L_11642444_SNP [dm3] 3L_11649344_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11646777	3L_11646777_SNP [dm3] 3L_11653677_SNP [dm6]	T	A	5.282e^-30	2.696e^-26	INTRON CG32085
3L	11652640	3L_11652640_SNP [dm3] 3L_11659540_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	INTRON CG32085
3L	15746111	3L_15746111_SNP [dm3] 3L_15753011_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTERGENIC
3L	17998441	3L_17998441_SNP [dm3] 3L_18005341_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	21120610	3L_21120610_SNP [dm3] 3L_21127510_SNP [dm6]	A	C	5.282e^-30	2.696e^-26	INTRON ko
3L	8434917	3L_8434917_DEL [dm3] 3L_8441817_DEL [dm6]	AAAGTCT	A	5.282e^-30	2.696e^-26	UPSTREAM Unr INTRON Unr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8434926	3L_8434926_SNP [dm3] 3L_8441826_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	UPSTREAM Unr INTRON Unr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9178522	3L_9178522_SNP [dm3] 3L_9185422_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	INTERGENIC
3R	10557789	3R_10557789_SNP [dm3] 3R_14732067_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC
3R	14066977	3R_14066977_SNP [dm3] 3R_18241255_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14087102	3R_14087102_SNP [dm3] 3R_18261380_SNP [dm6]	A	T	5.282e^-30	2.696e^-26	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15424585	3R_15424585_SNP [dm3] 3R_19598863_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	UTR_5_PRIME Cpr92A
3R	17145659	3R_17145659_SNP [dm3] 3R_21319937_SNP [dm6]	G	C	5.282e^-30	2.696e^-26	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
3R	23085846	3R_23085846_SNP [dm3] 3R_27260124_SNP [dm6]	G	A	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9264408	3R_9264408_SNP [dm3] 3R_13438686_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	EXON CR42756
3R	9265392	3R_9265392_DEL [dm3] 3R_13439670_DEL [dm6]	AA	A	5.282e^-30	2.696e^-26	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9322294	3R_9322294_DEL [dm3] 3R_13496572_DEL [dm6]	CTC	C	5.282e^-30	2.696e^-26	INTERGENIC
X	12365640	X_12365640_SNP [dm3] X_12471607_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12366208	X_12366208_SNP [dm3] X_12472175_SNP [dm6]	T	A	5.282e^-30	2.696e^-26	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18390547	X_18390547_SNP [dm3] X_18496514_SNP [dm6]	T	C	5.282e^-30	2.696e^-26	SYNONYMOUS_CODING GalNAc-T2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5529140	X_5529140_SNP [dm3] X_5635107_SNP [dm6]	C	T	5.282e^-30	2.696e^-26	INTRON CG42492
2L	3730877	2L_3730877_SNP [dm3] 2L_3730877_SNP [dm6]	G	A	5.311e^-30	2.696e^-26	INTRON CG10019	TF binding site BDTNP1_TFBS_dl
2L	4314180	2L_4314180_SNP [dm3] 2L_4314180_SNP [dm6]	G	A	5.311e^-30	2.696e^-26	INTRON tutl
3L	9705808	3L_9705808_SNP [dm3] 3L_9712708_SNP [dm6]	T	C	5.385e^-30	2.696e^-26	INTRON SH3PX1	TF binding site mE1_TFBS_cnc
3R	10350180	3R_10350180_SNP [dm3] 3R_14524458_SNP [dm6]	G	C	5.385e^-30	2.696e^-26	INTRON Pde6
3R	10357044	3R_10357044_SNP [dm3] 3R_14531322_SNP [dm6]	T	G	5.385e^-30	2.696e^-26	INTRON Pde6
3R	9272875	3R_9272875_SNP [dm3] 3R_13447153_SNP [dm6]	C	T	5.385e^-30	2.696e^-26	INTERGENIC
3L	13081999	3L_13081999_SNP [dm3] 3L_13088899_SNP [dm6]	C	T	5.421e^-30	2.696e^-26	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14090541	3R_14090541_SNP [dm3] 3R_18264819_SNP [dm6]	A	G	5.421e^-30	2.696e^-26	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14214929	3R_14214929_SNP [dm3] 3R_18389207_SNP [dm6]	G	C	5.421e^-30	2.696e^-26	SYNONYMOUS_CODING Vha100-4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14921520	3R_14921520_SNP [dm3] 3R_19095798_SNP [dm6]	G	A	5.421e^-30	2.696e^-26	SYNONYMOUS_CODING ATPsyn-d UPSTREAM mRpL55	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16112798	3R_16112798_DEL [dm3] 3R_20287076_DEL [dm6]	TGAATTGGG	T	5.421e^-30	2.696e^-26	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	16113119	3R_16113119_INS [dm3] 3R_20287397_INS [dm6]	A	AGCCATTAAGGGCTTAA...	5.421e^-30	2.696e^-26	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19373694	3R_19373694_SNP [dm3] 3R_23547972_SNP [dm6]	T	C	5.421e^-30	2.696e^-26	INTERGENIC
3R	9244397	3R_9244397_SNP [dm3] 3R_13418675_SNP [dm6]	T	G	5.421e^-30	2.696e^-26	INTERGENIC
3R	9245095	3R_9245095_SNP [dm3] 3R_13419373_SNP [dm6]	C	T	5.421e^-30	2.696e^-26	UPSTREAM Ir87a INTERGENIC
3R	9245125	3R_9245125_SNP [dm3] 3R_13419403_SNP [dm6]	A	C	5.421e^-30	2.696e^-26	UPSTREAM Ir87a INTERGENIC
3R	9245485	3R_9245485_SNP [dm3] 3R_13419763_SNP [dm6]	G	A	5.421e^-30	2.696e^-26	UPSTREAM Ir87a INTERGENIC
3R	9245643	3R_9245643_SNP [dm3] 3R_13419921_SNP [dm6]	T	C	5.421e^-30	2.696e^-26	UPSTREAM Ir87a INTERGENIC
3R	9261071	3R_9261071_SNP [dm3] 3R_13435349_SNP [dm6]	C	T	5.421e^-30	2.696e^-26	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9265772	3R_9265772_SNP [dm3] 3R_13440050_SNP [dm6]	G	A	5.421e^-30	2.696e^-26	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16511027	X_16511027_SNP [dm3] X_16616994_SNP [dm6]	C	T	5.421e^-30	2.696e^-26	INTRON CG9782
X	17181701	X_17181701_SNP [dm3] X_17287668_SNP [dm6]	C	A	5.421e^-30	2.696e^-26	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA
X	5529165	X_5529165_SNP [dm3] X_5635132_SNP [dm6]	C	T	5.421e^-30	2.696e^-26	INTRON CG42492
2L	14015355	2L_14015355_SNP [dm3] 2L_14015355_SNP [dm6]	G	T	4.474e^-29	2.190e^-25	INTRON bgm
2L	14015356	2L_14015356_SNP [dm3] 2L_14015356_SNP [dm6]	T	A	4.474e^-29	2.190e^-25	INTRON bgm
2L	14970451	2L_14970451_SNP [dm3] 2L_14970451_SNP [dm6]	C	G	4.474e^-29	2.190e^-25	INTRON CG42313
2L	9454090	2L_9454090_SNP [dm3] 2L_9454090_SNP [dm6]	C	T	4.474e^-29	2.190e^-25	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7486659	2R_7486659_DEL [dm3] 2R_11599154_DEL [dm6]	TA	T	4.474e^-29	2.190e^-25	INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	7486662	2R_7486662_SNP [dm3] 2R_11599157_SNP [dm6]	A	T	4.474e^-29	2.190e^-25	INTRON tou	TF binding site BDTNP1_TFBS_dl
3R	14084953	3R_14084953_SNP [dm3] 3R_18259231_SNP [dm6]	A	C	4.589e^-29	2.195e^-25	INTERGENIC	transposable element FlyBase
2L	3438633	2L_3438633_SNP [dm3] 2L_3438633_SNP [dm6]	T	G	4.666e^-29	2.195e^-25	INTERGENIC
2R	12074747	2R_12074747_SNP [dm3] 2R_16187242_SNP [dm6]	A	G	4.681e^-29	2.195e^-25	UPSTREAM CG8441 & 1 other INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9537550	2R_9537550_SNP [dm3] 2R_13650045_SNP [dm6]	A	G	4.681e^-29	2.195e^-25	INTRON fas
2R	15593492	2R_15593492_SNP [dm3] 2R_19705987_SNP [dm6]	C	T	4.692e^-29	2.195e^-25	INTERGENIC	regulatory region REDfly_CRMs
2R	17584882	2R_17584882_SNP [dm3] 2R_21697377_SNP [dm6]	C	T	4.692e^-29	2.195e^-25	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
2R	7461763	2R_7461763_SNP [dm3] 2R_11574258_SNP [dm6]	A	T	4.692e^-29	2.195e^-25	INTERGENIC
2R	7692198	2R_7692198_SNP [dm3] 2R_11804693_SNP [dm6]	G	A	4.692e^-29	2.195e^-25	INTRON ths
2R	7692199	2R_7692199_SNP [dm3] 2R_11804694_SNP [dm6]	A	G	4.692e^-29	2.195e^-25	INTRON ths
3L	9708125	3L_9708125_SNP [dm3] 3L_9715025_SNP [dm6]	C	A	4.692e^-29	2.195e^-25	INTRON vsg	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10242738	3R_10242738_SNP [dm3] 3R_14417016_SNP [dm6]	G	T	4.751e^-29	2.195e^-25	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7768386	2L_7768386_SNP [dm3] 2L_7768386_SNP [dm6]	C	T	4.751e^-29	2.195e^-25	INTRON CG7191
2R	2596089	2R_2596089_DEL [dm3] 2R_6708584_DEL [dm6]	CACTTTATC	C	4.751e^-29	2.195e^-25	UPSTREAM CG3409 & 1 other INTRON CG3409 & 1 other EXON CR43611	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19373345	3R_19373345_SNP [dm3] 3R_23547623_SNP [dm6]	T	G	4.785e^-29	2.195e^-25	INTERGENIC
3R	9260999	3R_9260999_SNP [dm3] 3R_13435277_SNP [dm6]	C	T	4.785e^-29	2.195e^-25	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10597029	3L_10597029_SNP [dm3] 3L_10603929_SNP [dm6]	G	T	4.802e^-29	2.195e^-25	INTERGENIC
3R	19199824	3R_19199824_SNP [dm3] 3R_23374102_SNP [dm6]	G	A	4.802e^-29	2.195e^-25	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	19356254	3R_19356254_SNP [dm3] 3R_23530532_SNP [dm6]	A	G	4.802e^-29	2.195e^-25	INTRON CG10175
3L	11118382	3L_11118382_SNP [dm3] 3L_11125282_SNP [dm6]	A	C	4.815e^-29	2.195e^-25	INTRON CG42575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	11766505	2L_11766505_SNP [dm3] 2L_11766505_SNP [dm6]	A	G	4.849e^-29	2.195e^-25	INTERGENIC
2L	9227720	2L_9227720_SNP [dm3] 2L_9227720_SNP [dm6]	A	G	4.849e^-29	2.195e^-25	INTRON tai
2R	17619675	2R_17619675_SNP [dm3] 2R_21732170_SNP [dm6]	G	A	4.849e^-29	2.195e^-25	INTERGENIC
2R	7462947	2R_7462947_SNP [dm3] 2R_11575442_SNP [dm6]	G	T	4.849e^-29	2.195e^-25	INTERGENIC
2R	8298600	2R_8298600_DEL [dm3] 2R_12411095_DEL [dm6]	ATT	A	4.849e^-29	2.195e^-25	DOWNSTREAM CG33626 INTRON CG33627
2R	8299000	2R_8299000_SNP [dm3] 2R_12411495_SNP [dm6]	T	G	4.849e^-29	2.195e^-25	DOWNSTREAM CG33626 INTRON CG33627
3L	1040901	3L_1040901_SNP [dm3] 3L_1040901_SNP [dm6]	A	G	4.849e^-29	2.195e^-25	INTRON bab1
3L	17632514	3L_17632514_SNP [dm3] 3L_17639414_SNP [dm6]	T	G	4.849e^-29	2.195e^-25	SYNONYMOUS_CODING Pep UTR_3_PRIME Pep	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19377734	3R_19377734_SNP [dm3] 3R_23552012_SNP [dm6]	G	A	4.920e^-29	2.195e^-25	INTERGENIC
2L	16655729	2L_16655729_SNP [dm3] 2L_16655729_SNP [dm6]	A	G	4.943e^-29	2.195e^-25	INTRON CG42389
2L	5458926	2L_5458926_SNP [dm3] 2L_5458926_SNP [dm6]	C	T	4.973e^-29	2.195e^-25	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7160048	2L_7160048_MNP [dm3] 2L_7160048_MNP [dm6]	CTT	AAA	4.973e^-29	2.195e^-25	INTERGENIC
2L	9237127	2L_9237127_SNP [dm3] 2L_9237127_SNP [dm6]	G	T	4.973e^-29	2.195e^-25	UPSTREAM tRNA:CR31885 INTRON tai
2R	5206295	2R_5206295_SNP [dm3] 2R_9318790_SNP [dm6]	C	T	4.973e^-29	2.195e^-25	NON_SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7195093	2R_7195093_SNP [dm3] 2R_11307588_SNP [dm6]	C	T	4.973e^-29	2.195e^-25	UPSTREAM CG7745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7463733	2R_7463733_SNP [dm3] 2R_11576228_SNP [dm6]	A	T	4.973e^-29	2.195e^-25	INTERGENIC
2R	7692266	2R_7692266_SNP [dm3] 2R_11804761_SNP [dm6]	T	C	4.973e^-29	2.195e^-25	INTRON ths
3L	11652592	3L_11652592_SNP [dm3] 3L_11659492_SNP [dm6]	G	C	4.973e^-29	2.195e^-25	INTRON CG32085
3L	9138289	3L_9138289_INS [dm3] 3L_9145189_INS [dm6]	A	ATTCAG	4.973e^-29	2.195e^-25	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	3773193	3R_3773193_SNP [dm3] 3R_7947471_SNP [dm6]	G	T	4.973e^-29	2.195e^-25	INTRON dsx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9245659	3R_9245659_SNP [dm3] 3R_13419937_SNP [dm6]	A	G	4.973e^-29	2.195e^-25	UPSTREAM Ir87a INTERGENIC
X	2886890	X_2886890_SNP [dm3] X_2992857_SNP [dm6]	C	A	4.973e^-29	2.195e^-25	INTRON kirre
2R	17139073	2R_17139073_SNP [dm3] 2R_21251568_SNP [dm6]	A	T	5.074e^-29	2.234e^-25	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6967902	3L_6967902_SNP [dm3] 3L_6974802_SNP [dm6]	C	A	5.126e^-29	2.246e^-25	INTRON Galphai
3R	21385886	3R_21385886_SNP [dm3] 3R_25560164_SNP [dm6]	G	C	5.126e^-29	2.246e^-25	INTRON msi
2L	8006183	2L_8006183_SNP [dm3] 2L_8006183_SNP [dm6]	G	A	4.096e^-28	1.791e^-24	INTRON Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18511010	3R_18511010_SNP [dm3] 3R_22685288_SNP [dm6]	C	A	4.129e^-28	1.801e^-24	UTR_3_PRIME Gclm DOWNSTREAM Gclm	TF binding site BDTNP1_TFBS_da
2R	15296700	2R_15296700_SNP [dm3] 2R_19409195_SNP [dm6]	G	T	4.158e^-28	1.809e^-24	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2R	18272144	2R_18272144_SNP [dm3] 2R_22384639_SNP [dm6]	A	C	4.357e^-28	1.891e^-24	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	18250060	2L_18250060_SNP [dm3] 2L_18250060_SNP [dm6]	G	C	4.386e^-28	1.897e^-24	INTRON CG42750
3R	19444957	3R_19444957_DEL [dm3] 3R_23619235_DEL [dm6]	TT	T	4.402e^-28	1.897e^-24	INTRON CG31145
3R	21469763	3R_21469763_SNP [dm3] 3R_25644041_SNP [dm6]	C	G	4.402e^-28	1.897e^-24	INTRON jigr1
3R	25239286	3R_25239286_SNP [dm3] 3R_29413564_SNP [dm6]	C	A	4.460e^-28	1.918e^-24	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	16990685	2L_16990685_SNP [dm3] 2L_16990685_SNP [dm6]	C	A	4.514e^-28	1.934e^-24	INTRON beat-IIIb
3L	8859243	3L_8859243_SNP [dm3] 3L_8866143_SNP [dm6]	A	C	4.517e^-28	1.934e^-24	INTRON dally
3R	22754413	3R_22754413_SNP [dm3] 3R_26928691_SNP [dm6]	T	C	4.535e^-28	1.937e^-24	INTRON sda
X	19425375	X_19425375_SNP [dm3] X_19531342_SNP [dm6]	T	C	4.571e^-28	1.948e^-24	NON_SYNONYMOUS_CODING CG12231 DOWNSTREAM CG32532 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14297294	2L_14297294_SNP [dm3] 2L_14297294_SNP [dm6]	A	T	4.590e^-28	1.951e^-24	INTRON wb
2L	18244829	2L_18244829_SNP [dm3] 2L_18244829_SNP [dm6]	A	T	3.878e^-27	1.642e^-23	INTRON CG42750
2R	7515914	2R_7515914_INS [dm3] 2R_11628409_INS [dm6]	T	TAAAGT	3.882e^-27	1.642e^-23	INTRON CG9005	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14899983	2L_14899983_SNP [dm3] 2L_14899983_SNP [dm6]	A	G	3.931e^-27	1.660e^-23	INTERGENIC
3R	9416536	3R_9416536_DEL [dm3] 3R_13590814_DEL [dm6]	GG	G	4.028e^-27	1.696e^-23	DOWNSTREAM CG14369 INTERGENIC
2L	18235105	2L_18235105_SNP [dm3] 2L_18235105_SNP [dm6]	G	A	4.049e^-27	1.701e^-23	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15746081	3L_15746081_SNP [dm3] 3L_15752981_SNP [dm6]	T	C	4.334e^-27	1.817e^-23	INTERGENIC
2L	16732058	2L_16732058_SNP [dm3] 2L_16732058_SNP [dm6]	G	T	4.426e^-27	1.852e^-23	UTR_5_PRIME Prosbeta4 UPSTREAM CG17904 DOWNSTREAM CG31812	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16809572	2L_16809572_SNP [dm3] 2L_16809572_SNP [dm6]	G	A	3.331e^-26	1.390e^-22	INTRON CG13280 & 1 other
3L	11658461	3L_11658461_DEL [dm3] 3L_11665361_DEL [dm6]	TAT	T	3.561e^-26	1.483e^-22	INTRON CG32085
2L	18235770	2L_18235770_SNP [dm3] 2L_18235770_SNP [dm6]	C	A	3.662e^-26	1.522e^-22	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3814235	2L_3814235_SNP [dm3] 2L_3814235_SNP [dm6]	T	C	3.774e^-26	1.565e^-22	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	18265517	2L_18265517_SNP [dm3] 2L_18265517_SNP [dm6]	G	A	3.812e^-26	1.577e^-22	INTRON CG42750
2R	17177520	2R_17177520_SNP [dm3] 2R_21290015_SNP [dm6]	A	T	3.105e^-25	1.282e^-21	DOWNSTREAM CG30392 INTRON CG10505
2L	19541624	2L_19541624_INS [dm3] 2L_19541624_INS [dm6]	A	AA	3.282e^-24	1.352e^-20	UPSTREAM ref_2_P DOWNSTREAM CG13081 INTERGENIC
2R	9519109	2R_9519109_INS [dm3] 2R_13631604_INS [dm6]	T	TTATAT	2.797e^-23	1.149e^-19	INTRON fas
2L	9236681	2L_9236681_SNP [dm3] 2L_9236681_SNP [dm6]	G	T	2.678e^-20	1.098e^-16	UPSTREAM tRNA:CR31885 INTRON tai
3R	17690233	3R_17690233_DEL [dm3] 3R_21864511_DEL [dm6]	GGTGAGGTATG...	G	8.811e^-20	3.604e^-16	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11762433	2L_11762433_SNP [dm3] 2L_11762433_SNP [dm6]	A	C	1.636e^-13	6.677e^-10	INTERGENIC
2R	13744132	2R_13744132_SNP [dm3] 2R_17856627_SNP [dm6]	T	A	7.421e^-13	3.022e^-9	UTR_5_PRIME olf186-F INTRON olf186-F
2L	11762412	2L_11762412_SNP [dm3] 2L_11762412_SNP [dm6]	T	C	1.280e^-12	5.181e^-9	INTERGENIC
2L	11767856	2L_11767856_SNP [dm3] 2L_11767856_SNP [dm6]	A	G	1.280e^-12	5.181e^-9	INTERGENIC
2L	11767857	2L_11767857_SNP [dm3] 2L_11767857_SNP [dm6]	G	C	1.280e^-12	5.181e^-9	INTERGENIC
2R	15765211	2R_15765211_DEL [dm3] 2R_19877706_DEL [dm6]	TT	T	3.888e^-12	1.570e^-8	INTERGENIC
3R	22727018	3R_22727018_SNP [dm3] 3R_26901296_SNP [dm6]	G	T	1.832e^-11	7.380e^-8	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10552604	3L_10552604_SNP [dm3] 3L_10559504_SNP [dm6]	T	C	2.690e^-11	1.079e^-7	UPSTREAM CG6527 INTRON A2bp1
X	4358333	X_4358333_SNP [dm3] X_4464300_SNP [dm6]	T	C	2.690e^-11	1.079e^-7	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20987949	3R_20987949_SNP [dm3] 3R_25162227_SNP [dm6]	G	A	3.011e^-11	1.205e^-7	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12647018	2R_12647018_SNP [dm3] 2R_16759513_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104
2R	12647565	2R_12647565_SNP [dm3] 2R_16760060_SNP [dm6]	T	C	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647616	2R_12647616_SNP [dm3] 2R_16760111_SNP [dm6]	G	A	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647625	2R_12647625_SNP [dm3] 2R_16760120_SNP [dm6]	G	C	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647652	2R_12647652_SNP [dm3] 2R_16760147_SNP [dm6]	T	C	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647658	2R_12647658_SNP [dm3] 2R_16760153_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10537521	3L_10537521_SNP [dm3] 3L_10544421_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTRON A2bp1
3L	10544922	3L_10544922_SNP [dm3] 3L_10551822_SNP [dm6]	T	A	3.688e^-11	1.383e^-7	INTRON A2bp1
3L	10545290	3L_10545290_SNP [dm3] 3L_10552190_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTRON A2bp1
3L	10545317	3L_10545317_SNP [dm3] 3L_10552217_SNP [dm6]	C	A	3.688e^-11	1.383e^-7	INTRON A2bp1
3L	10545606	3L_10545606_SNP [dm3] 3L_10552506_SNP [dm6]	G	T	3.688e^-11	1.383e^-7	INTRON A2bp1
3L	10546852	3L_10546852_SNP [dm3] 3L_10553752_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	10547116	3L_10547116_SNP [dm3] 3L_10554016_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	10548677	3L_10548677_SNP [dm3] 3L_10555577_SNP [dm6]	A	G	3.688e^-11	1.383e^-7	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10548892	3L_10548892_SNP [dm3] 3L_10555792_SNP [dm6]	G	A	3.688e^-11	1.383e^-7	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	10553020	3L_10553020_SNP [dm3] 3L_10559920_SNP [dm6]	A	T	3.688e^-11	1.383e^-7	UPSTREAM CG6527 INTRON A2bp1
3R	10347440	3R_10347440_SNP [dm3] 3R_14521718_SNP [dm6]	T	G	3.688e^-11	1.383e^-7	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
3R	10348526	3R_10348526_SNP [dm3] 3R_14522804_SNP [dm6]	A	T	3.688e^-11	1.383e^-7	INTRON Pde6 & 1 other
3R	10349521	3R_10349521_SNP [dm3] 3R_14523799_SNP [dm6]	T	A	3.688e^-11	1.383e^-7	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	10350277	3R_10350277_SNP [dm3] 3R_14524555_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10350734	3R_10350734_SNP [dm3] 3R_14525012_SNP [dm6]	C	G	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10354743	3R_10354743_SNP [dm3] 3R_14529021_SNP [dm6]	T	C	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10355284	3R_10355284_SNP [dm3] 3R_14529562_SNP [dm6]	A	T	3.688e^-11	1.383e^-7	NON_SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10357106	3R_10357106_SNP [dm3] 3R_14531384_SNP [dm6]	A	G	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10359556	3R_10359556_SNP [dm3] 3R_14533834_SNP [dm6]	G	A	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10359558	3R_10359558_SNP [dm3] 3R_14533836_SNP [dm6]	C	G	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10361935	3R_10361935_SNP [dm3] 3R_14536213_SNP [dm6]	G	C	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10362296	3R_10362296_SNP [dm3] 3R_14536574_SNP [dm6]	A	G	3.688e^-11	1.383e^-7	INTRON Pde6
3R	10364001	3R_10364001_SNP [dm3] 3R_14538279_SNP [dm6]	T	C	3.688e^-11	1.383e^-7	INTRON Pde6
X	7443000	X_7443000_SNP [dm3] X_7548967_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	UPSTREAM CG32719 INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	7447979	X_7447979_SNP [dm3] X_7553946_SNP [dm6]	C	T	3.688e^-11	1.383e^-7	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22727016	3R_22727016_SNP [dm3] 3R_26901294_SNP [dm6]	A	G	3.875e^-11	1.450e^-7	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	20426263	3R_20426263_SNP [dm3] 3R_24600541_SNP [dm6]	C	T	5.642e^-11	2.107e^-7	INTRON mld	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	18646752	3R_18646752_SNP [dm3] 3R_22821030_SNP [dm6]	A	T	6.839e^-11	2.549e^-7	INTERGENIC
2L	21809787	2L_21809787_SNP [dm3] 2L_21809787_SNP [dm6]	C	A	6.916e^-11	2.565e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21809799	2L_21809799_SNP [dm3] 2L_21809799_SNP [dm6]	C	T	6.916e^-11	2.565e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10245268	3R_10245268_SNP [dm3] 3R_14419546_SNP [dm6]	G	C	6.937e^-11	2.565e^-7	INTRON cv-c & 1 other
3R	10346905	3R_10346905_SNP [dm3] 3R_14521183_SNP [dm6]	C	G	6.937e^-11	2.565e^-7	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
3L	13139121	3L_13139121_SNP [dm3] 3L_13146021_SNP [dm6]	T	G	7.672e^-11	2.800e^-7	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10354505	3R_10354505_SNP [dm3] 3R_14528783_SNP [dm6]	C	G	7.672e^-11	2.800e^-7	INTRON Pde6
3R	10365060	3R_10365060_SNP [dm3] 3R_14539338_SNP [dm6]	C	T	7.672e^-11	2.800e^-7	INTRON Pde6
2L	16482048	2L_16482048_SNP [dm3] 2L_16482048_SNP [dm6]	T	G	7.695e^-11	2.800e^-7	INTRON dac	regulatory region REDfly_CRMs
2L	16655730	2L_16655730_SNP [dm3] 2L_16655730_SNP [dm6]	G	A	7.695e^-11	2.800e^-7	INTRON CG42389
2L	16655756	2L_16655756_SNP [dm3] 2L_16655756_SNP [dm6]	A	T	7.695e^-11	2.800e^-7	INTRON CG42389
2L	16656174	2L_16656174_DEL [dm3] 2L_16656174_DEL [dm6]	TG	T	7.695e^-11	2.800e^-7	UPSTREAM CG42389 INTRON CG42389
3R	10361949	3R_10361949_SNP [dm3] 3R_14536227_SNP [dm6]	T	A	7.695e^-11	2.800e^-7	INTRON Pde6
2L	4857613	2L_4857613_SNP [dm3] 2L_4857613_SNP [dm6]	C	T	1.150e^-10	4.175e^-7	INTRON pog
2L	10449568	2L_10449568_SNP [dm3] 2L_10449568_SNP [dm6]	T	C	1.167e^-10	4.213e^-7	DOWNSTREAM ppk10 INTRON loh
2R	14014187	2R_14014187_SNP [dm3] 2R_18126682_SNP [dm6]	G	A	1.185e^-10	4.213e^-7	SYNONYMOUS_CODING Spn55B UPSTREAM stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14014202	2R_14014202_SNP [dm3] 2R_18126697_SNP [dm6]	T	C	1.185e^-10	4.213e^-7	SYNONYMOUS_CODING Spn55B UPSTREAM stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16236941	3R_16236941_DEL [dm3] 3R_20411219_DEL [dm6]	AAG	A	1.185e^-10	4.213e^-7	INTRON Gfrl
3R	2399304	3R_2399304_SNP [dm3] 3R_6573582_SNP [dm6]	C	A	1.185e^-10	4.213e^-7	INTRON dpr11
3R	2423069	3R_2423069_SNP [dm3] 3R_6597347_SNP [dm6]	A	C	1.185e^-10	4.213e^-7	NON_SYNONYMOUS_CODING CG1138
3R	2423478	3R_2423478_SNP [dm3] 3R_6597756_SNP [dm6]	C	T	1.185e^-10	4.213e^-7	NON_SYNONYMOUS_CODING CG1138
3R	25076975	3R_25076975_SNP [dm3] 3R_29251253_SNP [dm6]	A	T	1.185e^-10	4.213e^-7	UPSTREAM SP1029 DOWNSTREAM stg INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26751887	3R_26751887_SNP [dm3] 3R_30926165_SNP [dm6]	T	A	1.185e^-10	4.213e^-7	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3R	9346463	3R_9346463_SNP [dm3] 3R_13520741_SNP [dm6]	C	A	1.185e^-10	4.213e^-7	INTERGENIC
X	12367389	X_12367389_SNP [dm3] X_12473356_SNP [dm6]	G	A	1.185e^-10	4.213e^-7	INTRON CG42258	TF binding site BDTNP1_TFBS_dl
2L	14968336	2L_14968336_SNP [dm3] 2L_14968336_SNP [dm6]	G	A	1.354e^-10	4.804e^-7	INTRON CG42313
2L	7331176	2L_7331176_SNP [dm3] 2L_7331176_SNP [dm6]	C	T	1.384e^-10	4.899e^-7	INTERGENIC
3R	18632449	3R_18632449_SNP [dm3] 3R_22806727_SNP [dm6]	C	A	1.566e^-10	5.533e^-7	UTR_3_PRIME CG7031 DOWNSTREAM CG7031
2L	16654404	2L_16654404_SNP [dm3] 2L_16654404_SNP [dm6]	C	A	1.580e^-10	5.572e^-7	INTRON CG42389
2L	16461423	2L_16461423_SNP [dm3] 2L_16461423_SNP [dm6]	A	G	1.601e^-10	5.582e^-7	INTERGENIC	regulatory region REDfly_CRMs
2L	16461426	2L_16461426_SNP [dm3] 2L_16461426_SNP [dm6]	A	T	1.601e^-10	5.582e^-7	INTERGENIC	regulatory region REDfly_CRMs
2L	16732004	2L_16732004_SNP [dm3] 2L_16732004_SNP [dm6]	A	G	1.601e^-10	5.582e^-7	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16732059	2L_16732059_SNP [dm3] 2L_16732059_SNP [dm6]	G	T	1.601e^-10	5.582e^-7	UTR_5_PRIME Prosbeta4 UPSTREAM CG17904 DOWNSTREAM CG31812	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	12646956	2R_12646956_SNP [dm3] 2R_16759451_SNP [dm6]	A	T	1.601e^-10	5.582e^-7	INTRON unc-104
3L	10548380	3L_10548380_SNP [dm3] 3L_10555280_SNP [dm6]	G	A	1.601e^-10	5.582e^-7	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3738983	2L_3738983_SNP [dm3] 2L_3738983_SNP [dm6]	A	G	1.607e^-10	5.582e^-7	INTRON CG10019
3R	10361943	3R_10361943_SNP [dm3] 3R_14536221_SNP [dm6]	A	G	1.607e^-10	5.582e^-7	INTRON Pde6
2L	3747564	2L_3747564_SNP [dm3] 2L_3747564_SNP [dm6]	G	C	1.664e^-10	5.770e^-7	INTRON CG10019
X	13357588	X_13357588_SNP [dm3] X_13463555_SNP [dm6]	T	C	2.371e^-10	8.143e^-7	INTRON Neto
2L	6132454	2L_6132454_SNP [dm3] 2L_6132454_SNP [dm6]	C	T	2.437e^-10	8.143e^-7	UTR_3_PRIME CG9222 DOWNSTREAM CR45719
2L	6132473	2L_6132473_SNP [dm3] 2L_6132473_SNP [dm6]	T	C	2.437e^-10	8.143e^-7	UTR_3_PRIME CG9222 DOWNSTREAM CR45719
2R	17765028	2R_17765028_SNP [dm3] 2R_21877523_SNP [dm6]	A	G	2.437e^-10	8.143e^-7	INTRON Fili	TF binding site mE1_TFBS_cnc
3L	11649023	3L_11649023_SNP [dm3] 3L_11655923_SNP [dm6]	A	T	2.437e^-10	8.143e^-7	UPSTREAM mir-274 INTRON CG32085
3L	11649039	3L_11649039_SNP [dm3] 3L_11655939_SNP [dm6]	A	T	2.437e^-10	8.143e^-7	UPSTREAM mir-274 INTRON CG32085
3L	11649040	3L_11649040_SNP [dm3] 3L_11655940_SNP [dm6]	C	T	2.437e^-10	8.143e^-7	UPSTREAM mir-274 INTRON CG32085
3L	21732156	3L_21732156_SNP [dm3] 3L_21739056_SNP [dm6]	T	A	2.437e^-10	8.143e^-7	UPSTREAM CG14567 DOWNSTREAM CG14566 INTERGENIC
3R	14062662	3R_14062662_SNP [dm3] 3R_18236940_SNP [dm6]	G	A	2.437e^-10	8.143e^-7	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	10451653	2L_10451653_SNP [dm3] 2L_10451653_SNP [dm6]	C	T	2.458e^-10	8.143e^-7	SYNONYMOUS_CODING ppk10
2L	17840981	2L_17840981_SNP [dm3] 2L_17840981_SNP [dm6]	A	T	2.458e^-10	8.143e^-7	INTRON CadN2
2L	9060679	2L_9060679_SNP [dm3] 2L_9060679_SNP [dm6]	C	G	2.458e^-10	8.143e^-7	INTRON CG31708	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2416572	2R_2416572_SNP [dm3] 2R_6529067_SNP [dm6]	G	T	2.458e^-10	8.143e^-7	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2420551	2R_2420551_SNP [dm3] 2R_6533046_SNP [dm6]	G	C	2.458e^-10	8.143e^-7	INTRON jing EXON CR43905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2597800	2R_2597800_SNP [dm3] 2R_6710295_SNP [dm6]	G	C	2.458e^-10	8.143e^-7	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	2969174	2R_2969174_SNP [dm3] 2R_7081669_SNP [dm6]	G	T	2.458e^-10	8.143e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2971248	2R_2971248_SNP [dm3] 2R_7083743_SNP [dm6]	C	T	2.458e^-10	8.143e^-7	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6155774	2R_6155774_SNP [dm3] 2R_10268269_SNP [dm6]	C	T	2.458e^-10	8.143e^-7	SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9137259	2R_9137259_SNP [dm3] 2R_13249754_SNP [dm6]	T	C	2.458e^-10	8.143e^-7	DOWNSTREAM Mp20 INTRON CG4712
3R	11795584	3R_11795584_SNP [dm3] 3R_15969862_SNP [dm6]	C	T	2.458e^-10	8.143e^-7	INTRON mor	TF binding site mE1_TFBS_cad
3R	11798156	3R_11798156_SNP [dm3] 3R_15972434_SNP [dm6]	G	T	2.458e^-10	8.143e^-7	UPSTREAM Hel89B INTRON mor	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	11798273	3R_11798273_SNP [dm3] 3R_15972551_SNP [dm6]	G	T	2.458e^-10	8.143e^-7	SYNONYMOUS_CODING mor UPSTREAM Hel89B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	11799000	3R_11799000_SNP [dm3] 3R_15973278_SNP [dm6]	T	A	2.458e^-10	8.143e^-7	UPSTREAM Hel89B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26292280	3R_26292280_DEL [dm3] 3R_30466558_DEL [dm6]	AA	A	2.458e^-10	8.143e^-7	DOWNSTREAM CDase INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	26294073	3R_26294073_SNP [dm3] 3R_30468351_SNP [dm6]	G	A	2.458e^-10	8.143e^-7	INTRON PH4alphaEFB
2R	19038416	2R_19038416_SNP [dm3] 2R_23150893_SNP [dm6]	G	T	2.551e^-10	8.421e^-7	INTERGENIC
3L	2644182	3L_2644182_DEL [dm3] 3L_2644182_DEL [dm6]	AAGTACC	G	2.551e^-10	8.421e^-7	UPSTREAM CG14949 INTERGENIC
2L	13910746	2L_13910746_SNP [dm3] 2L_13910746_SNP [dm6]	C	T	2.803e^-10	9.235e^-7	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2L	16652180	2L_16652180_SNP [dm3] 2L_16652180_SNP [dm6]	G	T	2.960e^-10	9.718e^-7	INTRON CG42389
2L	16652184	2L_16652184_SNP [dm3] 2L_16652184_SNP [dm6]	A	T	2.960e^-10	9.718e^-7	INTRON CG42389
2L	16341767	2L_16341767_SNP [dm3] 2L_16341767_SNP [dm6]	A	G	3.131e^-10	1.026e^-6	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3L	1038286	3L_1038286_INS [dm3] 3L_1038286_INS [dm6]	T	TCATCTCAACTTT...	3.296e^-10	1.078e^-6	UTR_3_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16649971	2L_16649971_SNP [dm3] 2L_16649971_SNP [dm6]	C	T	3.314e^-10	1.082e^-6	INTRON CG42389
2L	16461427	2L_16461427_DEL [dm3] 2L_16461427_DEL [dm6]	AC	A	3.332e^-10	1.086e^-6	INTERGENIC	regulatory region REDfly_CRMs
2L	10450088	2L_10450088_DEL [dm3] 2L_10450088_DEL [dm6]	TTACTT	T	3.357e^-10	1.092e^-6	DOWNSTREAM ppk10 & 1 other INTERGENIC
2L	3747452	2L_3747452_SNP [dm3] 2L_3747452_SNP [dm6]	G	T	3.515e^-10	1.142e^-6	INTRON CG10019
3R	6474322	3R_6474322_SNP [dm3] 3R_10648600_SNP [dm6]	A	T	4.011e^-10	1.300e^-6	INTERGENIC
3L	20034283	3L_20034283_SNP [dm3] 3L_20041183_SNP [dm6]	G	T	4.333e^-10	1.402e^-6	INTERGENIC
2R	2503602	2R_2503602_SNP [dm3] 2R_6616097_SNP [dm6]	G	A	4.628e^-10	1.495e^-6	SYNONYMOUS_CODING jing	TF binding site mE1_TFBS_cad
3L	11649024	3L_11649024_SNP [dm3] 3L_11655924_SNP [dm6]	T	G	4.713e^-10	1.520e^-6	UPSTREAM mir-274 INTRON CG32085
2L	9413415	2L_9413415_SNP [dm3] 2L_9413415_SNP [dm6]	G	T	4.914e^-10	1.577e^-6	INTRON Shawl
2L	9413538	2L_9413538_SNP [dm3] 2L_9413538_SNP [dm6]	G	C	4.914e^-10	1.577e^-6	INTRON Shawl
2L	9413826	2L_9413826_SNP [dm3] 2L_9413826_SNP [dm6]	A	G	4.914e^-10	1.577e^-6	INTRON Shawl
2R	17133976	2R_17133976_SNP [dm3] 2R_21246471_SNP [dm6]	G	C	4.976e^-10	1.594e^-6	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11769208	3R_11769208_SNP [dm3] 3R_15943486_SNP [dm6]	T	G	5.118e^-10	1.631e^-6	INTRON Sap47	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11789379	3R_11789379_SNP [dm3] 3R_15963657_SNP [dm6]	T	C	5.118e^-10	1.631e^-6	UTR_5_PRIME CG4287 UPSTREAM CG5516	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11795562	3R_11795562_SNP [dm3] 3R_15969840_SNP [dm6]	T	A	5.118e^-10	1.631e^-6	INTRON mor	TF binding site mE1_TFBS_cad
2R	17751343	2R_17751343_SNP [dm3] 2R_21863838_SNP [dm6]	C	A	5.176e^-10	1.646e^-6	INTERGENIC
3R	18416775	3R_18416775_SNP [dm3] 3R_22591053_SNP [dm6]	T	A	5.198e^-10	1.651e^-6	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10147279	2L_10147279_SNP [dm3] 2L_10147279_SNP [dm6]	G	T	5.283e^-10	1.666e^-6	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17351687	2L_17351687_DEL [dm3] 2L_17351687_DEL [dm6]	TACCGCTACA	T	5.283e^-10	1.666e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11800504	3R_11800504_SNP [dm3] 3R_15974782_SNP [dm6]	C	T	5.283e^-10	1.666e^-6	INTRON Hel89B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	8675693	3R_8675693_SNP [dm3] 3R_12849971_SNP [dm6]	T	C	5.283e^-10	1.666e^-6	UPSTREAM CR45587 DOWNSTREAM CR44234 INTERGENIC
3R	20124966	3R_20124966_SNP [dm3] 3R_24299244_SNP [dm6]	C	T	7.031e^-10	2.214e^-6	INTRON crb	TF binding site BDTNP1_TFBS_dl
X	11364302	X_11364302_SNP [dm3] X_11470269_SNP [dm6]	G	T	7.539e^-10	2.369e^-6	INTRON CG43155
3R	27022260	3R_27022260_SNP [dm3] 3R_31196538_SNP [dm6]	T	C	8.393e^-10	2.633e^-6	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16232329	2L_16232329_SNP [dm3] 2L_16232329_SNP [dm6]	G	A	9.270e^-10	2.899e^-6	INTRON CG42817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	16232333	2L_16232333_SNP [dm3] 2L_16232333_SNP [dm6]	G	A	9.270e^-10	2.899e^-6	INTRON CG42817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	13294829	2L_13294829_SNP [dm3] 2L_13294829_SNP [dm6]	T	A	9.298e^-10	2.902e^-6	UPSTREAM CG31729 INTRON CG31729
2R	2491094	2R_2491094_SNP [dm3] 2R_6603589_SNP [dm6]	T	C	9.385e^-10	2.925e^-6	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13068850	3L_13068850_SNP [dm3] 3L_13075750_SNP [dm6]	A	C	9.539e^-10	2.968e^-6	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
2R	7732639	2R_7732639_DEL [dm3] 2R_11845134_DEL [dm6]	AA	A	9.990e^-10	3.103e^-6	UPSTREAM S2P & 2 others DOWNSTREAM CG43190 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11774955	3R_11774955_SNP [dm3] 3R_15949233_SNP [dm6]	T	C	1.034e^-9	3.206e^-6	DOWNSTREAM CG31088 INTRON Sap47
2L	7085030	2L_7085030_SNP [dm3] 2L_7085030_SNP [dm6]	A	T	1.057e^-9	3.266e^-6	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16717960	2R_16717960_SNP [dm3] 2R_20830455_SNP [dm6]	C	T	1.057e^-9	3.266e^-6	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26340039	3R_26340039_SNP [dm3] 3R_30514317_SNP [dm6]	A	G	1.070e^-9	3.301e^-6	SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
3R	11769488	3R_11769488_SNP [dm3] 3R_15943766_SNP [dm6]	A	C	1.098e^-9	3.381e^-6	INTRON Sap47	TF binding site mE1_TFBS_cad
2R	17149209	2R_17149209_DEL [dm3] 2R_21261704_DEL [dm6]	ACA	A	1.740e^-9	5.350e^-6	INTRON Rgk3
2L	14479640	2L_14479640_SNP [dm3] 2L_14479640_SNP [dm6]	G	A	1.880e^-9	5.770e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	6266890	2L_6266890_SNP [dm3] 2L_6266890_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	INTRON Ddr
2R	7468307	2R_7468307_SNP [dm3] 2R_11580802_SNP [dm6]	C	T	2.501e^-9	7.393e^-6	SYNONYMOUS_CODING tou UTR_5_PRIME tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7478814	2R_7478814_SNP [dm3] 2R_11591309_SNP [dm6]	A	G	2.501e^-9	7.393e^-6	DOWNSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7483706	2R_7483706_SNP [dm3] 2R_11596201_SNP [dm6]	T	G	2.501e^-9	7.393e^-6	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7484184	2R_7484184_SNP [dm3] 2R_11596679_SNP [dm6]	C	G	2.501e^-9	7.393e^-6	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7488538	2R_7488538_SNP [dm3] 2R_11601033_SNP [dm6]	C	T	2.501e^-9	7.393e^-6	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	10288611	3L_10288611_SNP [dm3] 3L_10295511_SNP [dm6]	G	A	2.501e^-9	7.393e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10302975	3L_10302975_SNP [dm3] 3L_10309875_SNP [dm6]	G	A	2.501e^-9	7.393e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10525231	3L_10525231_SNP [dm3] 3L_10532131_SNP [dm6]	G	A	2.501e^-9	7.393e^-6	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10526804	3L_10526804_SNP [dm3] 3L_10533704_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	INTRON A2bp1
3L	10526830	3L_10526830_SNP [dm3] 3L_10533730_SNP [dm6]	T	A	2.501e^-9	7.393e^-6	INTRON A2bp1
3L	13871486	3L_13871486_SNP [dm3] 3L_13878386_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	UPSTREAM CG13737 INTRON dysc
3L	13871489	3L_13871489_SNP [dm3] 3L_13878389_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	UPSTREAM CG13737 INTRON dysc
3L	13871491	3L_13871491_SNP [dm3] 3L_13878391_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	UPSTREAM CG13737 INTRON dysc
3L	13871830	3L_13871830_SNP [dm3] 3L_13878730_SNP [dm6]	G	T	2.501e^-9	7.393e^-6	UPSTREAM CG13737 INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	478375	3L_478375_SNP [dm3] 3L_478375_SNP [dm6]	G	A	2.501e^-9	7.393e^-6	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3069159	3R_3069159_SNP [dm3] 3R_7243437_SNP [dm6]	A	G	2.501e^-9	7.393e^-6	NON_SYNONYMOUS_CODING CG14607 DOWNSTREAM CG1234
3R	4911889	3R_4911889_SNP [dm3] 3R_9086167_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	INTRON pum
3R	6189468	3R_6189468_SNP [dm3] 3R_10363746_SNP [dm6]	T	G	2.501e^-9	7.393e^-6	INTRON Rfx	TF binding site mE1_TFBS_cad
X	11999369	X_11999369_SNP [dm3] X_12105336_SNP [dm6]	A	T	2.501e^-9	7.393e^-6	INTRON CR43960 & 1 other
X	12350295	X_12350295_SNP [dm3] X_12456262_SNP [dm6]	C	T	2.501e^-9	7.393e^-6	DOWNSTREAM CG15731 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
X	12367548	X_12367548_SNP [dm3] X_12473515_SNP [dm6]	T	C	2.501e^-9	7.393e^-6	INTRON CG42258
X	2236861	X_2236861_SNP [dm3] X_2342828_SNP [dm6]	T	A	2.501e^-9	7.393e^-6	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2774365	3R_2774365_SNP [dm3] 3R_6948643_SNP [dm6]	A	G	4.078e^-9	1.204e^-5	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13342178	2L_13342178_SNP [dm3] 2L_13342178_SNP [dm6]	A	C	4.234e^-9	1.248e^-5	INTERGENIC
2L	7603941	2L_7603941_SNP [dm3] 2L_7603941_SNP [dm6]	G	T	4.391e^-9	1.282e^-5	UPSTREAM CR45370 INTERGENIC
2R	16496243	2R_16496243_SNP [dm3] 2R_20608738_SNP [dm6]	G	A	4.391e^-9	1.282e^-5	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12299147	3L_12299147_SNP [dm3] 3L_12306047_SNP [dm6]	T	C	4.391e^-9	1.282e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13921185	3L_13921185_SNP [dm3] 3L_13928085_SNP [dm6]	G	T	4.391e^-9	1.282e^-5	SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_sens
3R	11543000	3R_11543000_SNP [dm3] 3R_15717278_SNP [dm6]	A	T	4.391e^-9	1.282e^-5	UPSTREAM CG31294 INTERGENIC
X	12367407	X_12367407_SNP [dm3] X_12473374_SNP [dm6]	T	A	4.391e^-9	1.282e^-5	INTRON CG42258	TF binding site BDTNP1_TFBS_dl
3L	10596709	3L_10596709_SNP [dm3] 3L_10603609_SNP [dm6]	A	G	4.541e^-9	1.317e^-5	INTERGENIC
3L	10596760	3L_10596760_SNP [dm3] 3L_10603660_SNP [dm6]	T	A	4.541e^-9	1.317e^-5	INTERGENIC
3L	10596788	3L_10596788_DEL [dm3] 3L_10603688_DEL [dm6]	ACTGTCAATTTA...	A	4.541e^-9	1.317e^-5	INTERGENIC
3L	10597010	3L_10597010_SNP [dm3] 3L_10603910_SNP [dm6]	T	A	4.541e^-9	1.317e^-5	INTERGENIC
X	18884644	X_18884644_SNP [dm3] X_18990611_SNP [dm6]	G	A	4.600e^-9	1.332e^-5	INTRON CG43759	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10631253	2R_10631253_SNP [dm3] 2R_14743748_SNP [dm6]	A	C	4.739e^-9	1.333e^-5	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10631263	2R_10631263_SNP [dm3] 2R_14743758_SNP [dm6]	A	C	4.739e^-9	1.333e^-5	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14039305	2R_14039305_SNP [dm3] 2R_18151800_SNP [dm6]	G	C	4.739e^-9	1.333e^-5	UTR_5_PRIME adp UPSTREAM CG5742	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	16532059	2R_16532059_SNP [dm3] 2R_20644554_SNP [dm6]	C	T	4.739e^-9	1.333e^-5	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2R	7467531	2R_7467531_SNP [dm3] 2R_11580026_SNP [dm6]	A	T	4.739e^-9	1.333e^-5	INTRON tou
2R	7467537	2R_7467537_SNP [dm3] 2R_11580032_SNP [dm6]	T	A	4.739e^-9	1.333e^-5	INTRON tou
2R	7472182	2R_7472182_SNP [dm3] 2R_11584677_SNP [dm6]	A	G	4.739e^-9	1.333e^-5	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7479864	2R_7479864_SNP [dm3] 2R_11592359_SNP [dm6]	C	T	4.739e^-9	1.333e^-5	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7483123	2R_7483123_SNP [dm3] 2R_11595618_SNP [dm6]	T	C	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7483139	2R_7483139_SNP [dm3] 2R_11595634_SNP [dm6]	A	C	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7483428	2R_7483428_SNP [dm3] 2R_11595923_SNP [dm6]	A	C	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7484036	2R_7484036_SNP [dm3] 2R_11596531_SNP [dm6]	A	C	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7484205	2R_7484205_SNP [dm3] 2R_11596700_SNP [dm6]	A	G	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7486678	2R_7486678_SNP [dm3] 2R_11599173_SNP [dm6]	A	G	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	7488564	2R_7488564_SNP [dm3] 2R_11601059_SNP [dm6]	G	A	4.739e^-9	1.333e^-5	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	11125624	3L_11125624_SNP [dm3] 3L_11132524_SNP [dm6]	T	A	4.739e^-9	1.333e^-5	UPSTREAM CG32074 INTRON CG42575
3R	3069596	3R_3069596_SNP [dm3] 3R_7243874_SNP [dm6]	G	C	4.739e^-9	1.333e^-5	UTR_3_PRIME CG14607 DOWNSTREAM CG1234
3R	3763874	3R_3763874_SNP [dm3] 3R_7938152_SNP [dm6]	G	A	4.739e^-9	1.333e^-5	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2236839	X_2236839_SNP [dm3] X_2342806_SNP [dm6]	T	G	4.739e^-9	1.333e^-5	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5516907	2L_5516907_DEL [dm3] 2L_5516907_DEL [dm6]	ACATA	A	4.785e^-9	1.344e^-5	UPSTREAM CG14020 INTERGENIC
3L	3814440	3L_3814440_SNP [dm3] 3L_3814440_SNP [dm6]	C	T	5.675e^-9	1.584e^-5	DOWNSTREAM CR43932 & 1 other INTRON Scsalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3R	15239772	3R_15239772_SNP [dm3] 3R_19414050_SNP [dm6]	G	C	5.675e^-9	1.584e^-5	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27181830	3R_27181830_SNP [dm3] 3R_31356108_SNP [dm6]	T	C	5.675e^-9	1.584e^-5	INTRON CG34347
X	16547812	X_16547812_SNP [dm3] X_16653779_SNP [dm6]	T	C	5.675e^-9	1.584e^-5	NON_SYNONYMOUS_CODING CG9723 DOWNSTREAM CG32573 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1306674	3L_1306674_SNP [dm3] 3L_1306674_SNP [dm6]	T	A	7.024e^-9	1.910e^-5	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1306677	3L_1306677_SNP [dm3] 3L_1306677_SNP [dm6]	A	G	7.024e^-9	1.910e^-5	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6140643	2L_6140643_SNP [dm3] 2L_6140643_SNP [dm6]	C	T	7.144e^-9	1.910e^-5	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1689036	2L_1689036_SNP [dm3] 2L_1689036_SNP [dm6]	A	C	7.268e^-9	1.910e^-5	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1689092	2L_1689092_SNP [dm3] 2L_1689092_SNP [dm6]	A	G	7.268e^-9	1.910e^-5	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6131796	2L_6131796_SNP [dm3] 2L_6131796_SNP [dm6]	C	T	7.268e^-9	1.910e^-5	SYNONYMOUS_CODING CG9222	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6988926	2L_6988926_SNP [dm3] 2L_6988926_SNP [dm6]	C	A	7.268e^-9	1.910e^-5	INTRON uif	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14012168	2R_14012168_SNP [dm3] 2R_18124663_SNP [dm6]	C	G	7.268e^-9	1.910e^-5	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2R	14099815	2R_14099815_SNP [dm3] 2R_18212310_SNP [dm6]	G	A	7.268e^-9	1.910e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15815576	2R_15815576_SNP [dm3] 2R_19928071_SNP [dm6]	A	T	7.268e^-9	1.910e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	15815586	2R_15815586_SNP [dm3] 2R_19928081_SNP [dm6]	G	T	7.268e^-9	1.910e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7455682	2R_7455682_SNP [dm3] 2R_11568177_SNP [dm6]	C	A	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457405	2R_7457405_SNP [dm3] 2R_11569900_SNP [dm6]	G	A	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457422	2R_7457422_SNP [dm3] 2R_11569917_SNP [dm6]	C	T	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457520	2R_7457520_SNP [dm3] 2R_11570015_SNP [dm6]	T	C	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457529	2R_7457529_SNP [dm3] 2R_11570024_SNP [dm6]	T	G	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457656	2R_7457656_SNP [dm3] 2R_11570151_SNP [dm6]	C	G	7.268e^-9	1.910e^-5	INTERGENIC
2R	7457657	2R_7457657_SNP [dm3] 2R_11570152_SNP [dm6]	A	G	7.268e^-9	1.910e^-5	INTERGENIC
3L	10330305	3L_10330305_SNP [dm3] 3L_10337205_SNP [dm6]	A	T	7.268e^-9	1.910e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1045539	3L_1045539_SNP [dm3] 3L_1045539_SNP [dm6]	T	C	7.268e^-9	1.910e^-5	INTRON bab1
3L	12469043	3L_12469043_SNP [dm3] 3L_12475943_SNP [dm6]	T	A	7.268e^-9	1.910e^-5	NON_SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3L	12469089	3L_12469089_SNP [dm3] 3L_12475989_SNP [dm6]	C	A	7.268e^-9	1.910e^-5	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3L	12469349	3L_12469349_SNP [dm3] 3L_12476249_SNP [dm6]	C	T	7.268e^-9	1.910e^-5	INTRON CG10663	TF binding site mE1_TFBS_cad
3L	12469350	3L_12469350_SNP [dm3] 3L_12476250_SNP [dm6]	T	A	7.268e^-9	1.910e^-5	INTRON CG10663	TF binding site mE1_TFBS_cad
3L	12469822	3L_12469822_SNP [dm3] 3L_12476722_SNP [dm6]	G	A	7.268e^-9	1.910e^-5	SYNONYMOUS_CODING CG10663
3L	12469888	3L_12469888_SNP [dm3] 3L_12476788_SNP [dm6]	G	T	7.268e^-9	1.910e^-5	SYNONYMOUS_CODING CG10663
3L	12469909	3L_12469909_SNP [dm3] 3L_12476809_SNP [dm6]	A	G	7.268e^-9	1.910e^-5	SYNONYMOUS_CODING CG10663
3L	19089254	3L_19089254_SNP [dm3] 3L_19096154_SNP [dm6]	G	T	7.268e^-9	1.910e^-5	UTR_5_PRIME CG11577 DOWNSTREAM CG10424
3L	2089093	3L_2089093_SNP [dm3] 3L_2089093_SNP [dm6]	A	C	7.268e^-9	1.910e^-5	UTR_3_PRIME sls INTRON sls EXON CR42860
3L	2089542	3L_2089542_SNP [dm3] 3L_2089542_SNP [dm6]	T	A	7.268e^-9	1.910e^-5	UTR_3_PRIME sls DOWNSTREAM sls INTRON sls EXON CR42860	regulatory region REDfly_CRMs
3L	2089585	3L_2089585_SNP [dm3] 3L_2089585_SNP [dm6]	T	G	7.268e^-9	1.910e^-5	UTR_3_PRIME sls DOWNSTREAM sls INTRON sls EXON CR42860	regulatory region REDfly_CRMs
3L	9047150	3L_9047150_SNP [dm3] 3L_9054050_SNP [dm6]	A	G	7.268e^-9	1.910e^-5	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9575326	3L_9575326_SNP [dm3] 3L_9582226_SNP [dm6]	C	T	7.268e^-9	1.910e^-5	INTRON CG42673
3R	10255142	3R_10255142_DEL [dm3] 3R_14429420_DEL [dm6]	CCTAATC	C	7.268e^-9	1.910e^-5	INTRON cv-c
3R	3215933	3R_3215933_DEL [dm3] 3R_7390211_DEL [dm6]	AATAATATATACACA...	A	7.268e^-9	1.910e^-5	INTERGENIC
3R	4895263	3R_4895263_DEL [dm3] 3R_9069541_DEL [dm6]	GAAGGGTTGGTTAATTATTT...	T	7.268e^-9	1.910e^-5	UTR_3_PRIME pum DOWNSTREAM pum	TF binding site BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
3R	9279878	3R_9279878_SNP [dm3] 3R_13454156_SNP [dm6]	G	T	7.268e^-9	1.910e^-5	INTRON CG14372
3R	9305955	3R_9305955_SNP [dm3] 3R_13480233_SNP [dm6]	T	C	7.268e^-9	1.910e^-5	INTERGENIC
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	7.268e^-9	1.910e^-5	INTERGENIC
3R	9731337	3R_9731337_SNP [dm3] 3R_13905615_SNP [dm6]	G	A	7.268e^-9	1.910e^-5	DOWNSTREAM ems INTERGENIC
X	11356443	X_11356443_SNP [dm3] X_11462410_SNP [dm6]	T	C	7.268e^-9	1.910e^-5	INTRON CG43155
3L	10527309	3L_10527309_SNP [dm3] 3L_10534209_SNP [dm6]	C	T	7.751e^-9	2.034e^-5	INTRON A2bp1
3L	9139325	3L_9139325_SNP [dm3] 3L_9146225_SNP [dm6]	G	A	7.886e^-9	2.064e^-5	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi
X	17202110	X_17202110_SNP [dm3] X_17308077_SNP [dm6]	T	A	7.886e^-9	2.064e^-5	INTERGENIC
3L	10596769	3L_10596769_SNP [dm3] 3L_10603669_SNP [dm6]	T	A	8.233e^-9	2.152e^-5	INTERGENIC
2R	5205358	2R_5205358_SNP [dm3] 2R_9317853_SNP [dm6]	G	T	8.339e^-9	2.170e^-5	SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7470805	2R_7470805_SNP [dm3] 2R_11583300_SNP [dm6]	C	T	8.339e^-9	2.170e^-5	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7516686	3R_7516686_SNP [dm3] 3R_11690964_SNP [dm6]	T	C	8.339e^-9	2.170e^-5	SYNONYMOUS_CODING CG18765 UPSTREAM CG6908
2R	7467577	2R_7467577_SNP [dm3] 2R_11580072_SNP [dm6]	G	T	8.560e^-9	2.224e^-5	SYNONYMOUS_CODING tou
3R	11370966	3R_11370966_SNP [dm3] 3R_15545244_SNP [dm6]	C	T	8.693e^-9	2.256e^-5	SYNONYMOUS_CODING CG6045	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10631241	2R_10631241_SNP [dm3] 2R_14743736_SNP [dm6]	G	T	9.019e^-9	2.337e^-5	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17066741	2R_17066741_SNP [dm3] 2R_21179236_SNP [dm6]	T	A	1.050e^-8	2.713e^-5	UTR_5_PRIME Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	947913	3L_947913_SNP [dm3] 3L_947913_SNP [dm6]	A	T	1.050e^-8	2.713e^-5	INTRON Glut1
3L	10537414	3L_10537414_SNP [dm3] 3L_10544314_SNP [dm6]	C	A	1.079e^-8	2.776e^-5	INTRON A2bp1
3R	10245174	3R_10245174_SNP [dm3] 3R_14419452_SNP [dm6]	A	C	1.079e^-8	2.776e^-5	INTRON cv-c & 1 other
3R	10245212	3R_10245212_SNP [dm3] 3R_14419490_SNP [dm6]	C	A	1.079e^-8	2.776e^-5	INTRON cv-c & 1 other
3L	10529633	3L_10529633_SNP [dm3] 3L_10536533_SNP [dm6]	A	T	1.092e^-8	2.801e^-5	INTRON A2bp1
3L	21167538	3L_21167538_SNP [dm3] 3L_21174438_SNP [dm6]	G	A	1.092e^-8	2.801e^-5	SYNONYMOUS_CODING asparagine-synthetase INTRON chb
2L	10452491	2L_10452491_SNP [dm3] 2L_10452491_SNP [dm6]	A	G	1.167e^-8	2.989e^-5	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
3L	9575411	3L_9575411_SNP [dm3] 3L_9582311_SNP [dm6]	T	C	1.169e^-8	2.991e^-5	INTRON CG42673
3L	11309616	3L_11309616_SNP [dm3] 3L_11316516_SNP [dm6]	A	C	1.272e^-8	3.236e^-5	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11309619	3L_11309619_SNP [dm3] 3L_11316519_SNP [dm6]	A	C	1.272e^-8	3.236e^-5	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24760554	3R_24760554_SNP [dm3] 3R_28934832_SNP [dm6]	A	T	1.272e^-8	3.236e^-5	INTRON CG14521
3R	24760605	3R_24760605_SNP [dm3] 3R_28934883_SNP [dm6]	G	T	1.272e^-8	3.236e^-5	INTRON CG14521
2R	15453062	2R_15453062_SNP [dm3] 2R_19565557_SNP [dm6]	G	T	1.300e^-8	3.254e^-5	UPSTREAM tRNA:CR33535 INTRON sm
2R	7456916	2R_7456916_INS [dm3] 2R_11569411_INS [dm6]	G	GG	1.300e^-8	3.254e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7457252	2R_7457252_SNP [dm3] 2R_11569747_SNP [dm6]	G	A	1.300e^-8	3.254e^-5	INTERGENIC
2R	7457254	2R_7457254_SNP [dm3] 2R_11569749_SNP [dm6]	A	C	1.300e^-8	3.254e^-5	INTERGENIC
2R	7457533	2R_7457533_SNP [dm3] 2R_11570028_SNP [dm6]	A	T	1.300e^-8	3.254e^-5	INTERGENIC
2R	7457580	2R_7457580_DEL [dm3] 2R_11570075_DEL [dm6]	TCACTTTTGCTGACACTTCC...	T	1.300e^-8	3.254e^-5	INTERGENIC
2R	7457638	2R_7457638_SNP [dm3] 2R_11570133_SNP [dm6]	G	A	1.300e^-8	3.254e^-5	INTERGENIC
2R	7457641	2R_7457641_SNP [dm3] 2R_11570136_SNP [dm6]	A	T	1.300e^-8	3.254e^-5	INTERGENIC
2R	8780063	2R_8780063_SNP [dm3] 2R_12892558_SNP [dm6]	C	G	1.300e^-8	3.254e^-5	INTRON vg
3L	15746062	3L_15746062_SNP [dm3] 3L_15752962_SNP [dm6]	A	C	1.300e^-8	3.254e^-5	INTERGENIC
3L	21163477	3L_21163477_SNP [dm3] 3L_21170377_SNP [dm6]	A	C	1.300e^-8	3.254e^-5	INTRON Ac78C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21101161	X_21101161_SNP [dm3] X_21230134_SNP [dm6]	A	T	1.300e^-8	3.254e^-5	INTRON CG32521
X	17202028	X_17202028_SNP [dm3] X_17307995_SNP [dm6]	A	G	1.345e^-8	3.363e^-5	INTERGENIC
2L	1391095	2L_1391095_SNP [dm3] 2L_1391095_SNP [dm6]	C	T	1.384e^-8	3.410e^-5	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
2L	18239316	2L_18239316_SNP [dm3] 2L_18239316_SNP [dm6]	A	G	1.384e^-8	3.410e^-5	INTRON CG42750
3L	11240903	3L_11240903_SNP [dm3] 3L_11247803_SNP [dm6]	T	A	1.384e^-8	3.410e^-5	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4533813	3L_4533813_SNP [dm3] 3L_4533813_SNP [dm6]	T	G	1.384e^-8	3.410e^-5	INTRON CG11353
3L	4631045	3L_4631045_SNP [dm3] 3L_4631045_SNP [dm6]	G	T	1.384e^-8	3.410e^-5	INTRON axo
3R	3213929	3R_3213929_SNP [dm3] 3R_7388207_SNP [dm6]	C	T	1.384e^-8	3.410e^-5	EXON CR45560	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4845979	3R_4845979_SNP [dm3] 3R_9020257_SNP [dm6]	G	T	1.384e^-8	3.410e^-5	UPSTREAM tgo DOWNSTREAM neur INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9295518	3R_9295518_SNP [dm3] 3R_13469796_SNP [dm6]	G	A	1.384e^-8	3.410e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4236195	X_4236195_SNP [dm3] X_4342162_SNP [dm6]	T	C	1.384e^-8	3.410e^-5	INTRON norpA
X	4236924	X_4236924_SNP [dm3] X_4342891_SNP [dm6]	T	A	1.384e^-8	3.410e^-5	INTRON norpA
X	9068818	X_9068818_DEL [dm3] X_9174785_DEL [dm6]	CTTAAAC	C	1.384e^-8	3.410e^-5	UTR_3_PRIME mei-P26
2R	18240136	2R_18240136_DEL [dm3] 2R_22352631_DEL [dm6]	AA	A	1.504e^-8	3.699e^-5	INTRON Liprin-gamma
2R	7140330	2R_7140330_SNP [dm3] 2R_11252825_SNP [dm6]	C	A	1.514e^-8	3.719e^-5	NON_SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a
2R	15593552	2R_15593552_SNP [dm3] 2R_19706047_SNP [dm6]	C	T	1.560e^-8	3.758e^-5	INTERGENIC	regulatory region REDfly_CRMs
2R	15593610	2R_15593610_SNP [dm3] 2R_19706105_SNP [dm6]	A	T	1.560e^-8	3.758e^-5	INTERGENIC	regulatory region REDfly_CRMs
2R	15593621	2R_15593621_SNP [dm3] 2R_19706116_SNP [dm6]	C	T	1.560e^-8	3.758e^-5	INTERGENIC	regulatory region REDfly_CRMs
2R	15593624	2R_15593624_SNP [dm3] 2R_19706119_SNP [dm6]	A	T	1.560e^-8	3.758e^-5	INTERGENIC	regulatory region REDfly_CRMs
2R	17584552	2R_17584552_SNP [dm3] 2R_21697047_SNP [dm6]	G	A	1.560e^-8	3.758e^-5	UPSTREAM CngB DOWNSTREAM HmgZ INTRON CngB
2R	17584555	2R_17584555_SNP [dm3] 2R_21697050_SNP [dm6]	C	G	1.560e^-8	3.758e^-5	UPSTREAM CngB DOWNSTREAM HmgZ INTRON CngB
3L	11118470	3L_11118470_DEL [dm3] 3L_11125370_DEL [dm6]	ATCATG	A	1.560e^-8	3.758e^-5	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	11118520	3L_11118520_SNP [dm3] 3L_11125420_SNP [dm6]	A	T	1.560e^-8	3.758e^-5	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	11118595	3L_11118595_INS [dm3] 3L_11125495_INS [dm6]	T	TTCATTCTATAGTT...	1.560e^-8	3.758e^-5	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	11118602	3L_11118602_SNP [dm3] 3L_11125502_SNP [dm6]	A	G	1.560e^-8	3.758e^-5	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	17546807	3L_17546807_SNP [dm3] 3L_17553707_SNP [dm6]	C	T	1.560e^-8	3.758e^-5	SYNONYMOUS_CODING CycT	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	17551586	3L_17551586_SNP [dm3] 3L_17558486_SNP [dm6]	C	T	1.560e^-8	3.758e^-5	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5466431	3L_5466431_SNP [dm3] 3L_5473331_SNP [dm6]	A	G	1.560e^-8	3.758e^-5	INTERGENIC
3R	18387420	3R_18387420_SNP [dm3] 3R_22561698_SNP [dm6]	C	T	1.560e^-8	3.758e^-5	INTRON CG5278
3R	7875430	3R_7875430_SNP [dm3] 3R_12049708_SNP [dm6]	G	A	1.560e^-8	3.758e^-5	UPSTREAM CG14739 INTERGENIC
2L	4830819	2L_4830819_SNP [dm3] 2L_4830819_SNP [dm6]	T	A	1.631e^-8	3.924e^-5	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	16074938	2L_16074938_SNP [dm3] 2L_16074938_SNP [dm6]	C	A	1.663e^-8	3.994e^-5	INTRON beat-Ia
X	3713073	X_3713073_INS [dm3] X_3819040_INS [dm6]	C	CACC	1.682e^-8	4.034e^-5	UPSTREAM tRNA:CR32785 INTRON ec
2R	18272139	2R_18272139_DEL [dm3] 2R_22384634_DEL [dm6]	GCAT	G	1.935e^-8	4.636e^-5	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	13574830	2L_13574830_SNP [dm3] 2L_13574830_SNP [dm6]	C	G	2.093e^-8	4.709e^-5	INTRON kuz
2R	18614656	2R_18614656_SNP [dm3] 2R_22727151_SNP [dm6]	G	T	2.093e^-8	4.709e^-5	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14697709	3R_14697709_INS [dm3] 3R_18871987_INS [dm6]	T	TCCCA	2.101e^-8	4.709e^-5	INTERGENIC
X	16402532	X_16402532_SNP [dm3] X_16508499_SNP [dm6]	T	C	2.101e^-8	4.709e^-5	INTRON para
X	20936595	X_20936595_INS [dm3] X_21065568_INS [dm6]	T	TGGGTGAAGAAAAGACAGCA...	2.207e^-8	4.709e^-5	UPSTREAM CG32512 INTRON bves & 1 other
2L	4452610	2L_4452610_SNP [dm3] 2L_4452610_SNP [dm6]	A	G	2.254e^-8	4.709e^-5	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4452649	2L_4452649_SNP [dm3] 2L_4452649_SNP [dm6]	T	G	2.254e^-8	4.709e^-5	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4452745	2L_4452745_SNP [dm3] 2L_4452745_SNP [dm6]	T	C	2.254e^-8	4.709e^-5	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4452958	2L_4452958_SNP [dm3] 2L_4452958_SNP [dm6]	A	G	2.254e^-8	4.709e^-5	START_GAINED CG15439 UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10302222	2L_10302222_SNP [dm3] 2L_10302222_SNP [dm6]	A	C	2.292e^-8	4.709e^-5	UTR_3_PRIME nmd UPSTREAM CG13138 DOWNSTREAM nmd
2L	11762324	2L_11762324_SNP [dm3] 2L_11762324_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	INTERGENIC
2L	13758575	2L_13758575_SNP [dm3] 2L_13758575_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTRON TM9SF4
2L	13758577	2L_13758577_SNP [dm3] 2L_13758577_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTRON TM9SF4
2L	22076590	2L_22076590_SNP [dm3] 2L_22076590_SNP [dm6]	G	T	2.292e^-8	4.709e^-5	INTERGENIC
2L	22079879	2L_22079879_SNP [dm3] 2L_22079879_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING ttm3
2L	22082332	2L_22082332_SNP [dm3] 2L_22082332_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	INTERGENIC	transposable element FlyBase
2L	4127541	2L_4127541_SNP [dm3] 2L_4127541_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTERGENIC
2L	6515536	2L_6515536_SNP [dm3] 2L_6515536_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON CG31637
2R	14369150	2R_14369150_SNP [dm3] 2R_18481645_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON CG30116
2R	14369157	2R_14369157_SNP [dm3] 2R_18481652_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON CG30116
2R	16410049	2R_16410049_SNP [dm3] 2R_20522544_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
2R	16410115	2R_16410115_INS [dm3] 2R_20522610_INS [dm6]	A	AGTA	2.292e^-8	4.709e^-5	INTERGENIC
2R	16410118	2R_16410118_INS [dm3] 2R_20522613_INS [dm6]	C	CAAGTA	2.292e^-8	4.709e^-5	INTERGENIC
2R	16531762	2R_16531762_SNP [dm3] 2R_20644257_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16532287	2R_16532287_SNP [dm3] 2R_20644782_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2R	17100013	2R_17100013_DEL [dm3] 2R_21212508_DEL [dm6]	AGC	A	2.292e^-8	4.709e^-5	DOWNSTREAM CG4302 INTRON CG44245
2R	17100017	2R_17100017_DEL [dm3] 2R_21212512_DEL [dm6]	AGGT	A	2.292e^-8	4.709e^-5	DOWNSTREAM CG4302 INTRON CG44245
2R	3779480	2R_3779480_SNP [dm3] 2R_7891975_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON CG30377
2R	8306374	2R_8306374_SNP [dm3] 2R_12418869_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	DOWNSTREAM CG42782 & 2 others INTERGENIC
2R	8307804	2R_8307804_SNP [dm3] 2R_12420299_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	8352922	2R_8352922_SNP [dm3] 2R_12465417_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	UTR_3_PRIME Lac DOWNSTREAM dgt5
3L	10413922	3L_10413922_SNP [dm3] 3L_10420822_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
3L	11069656	3L_11069656_SNP [dm3] 3L_11076556_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
3L	11151812	3L_11151812_SNP [dm3] 3L_11158712_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_inv
3L	11641103	3L_11641103_SNP [dm3] 3L_11648003_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	NON_SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11646028	3L_11646028_SNP [dm3] 3L_11652928_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11646033	3L_11646033_SNP [dm3] 3L_11652933_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11646039	3L_11646039_SNP [dm3] 3L_11652939_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11647722	3L_11647722_SNP [dm3] 3L_11654622_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11654339	3L_11654339_SNP [dm3] 3L_11661239_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11654423	3L_11654423_SNP [dm3] 3L_11661323_SNP [dm6]	G	T	2.292e^-8	4.709e^-5	INTRON CG32085
3L	11654477	3L_11654477_SNP [dm3] 3L_11661377_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON CG32085
3L	13702720	3L_13702720_SNP [dm3] 3L_13709620_SNP [dm6]	T	G	2.292e^-8	4.709e^-5	INTRON bru-3
3L	13869142	3L_13869142_SNP [dm3] 3L_13876042_SNP [dm6]	C	A	2.292e^-8	4.709e^-5	INTRON dysc
3L	14615671	3L_14615671_SNP [dm3] 3L_14622571_SNP [dm6]	T	G	2.292e^-8	4.709e^-5	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3L	1689053	3L_1689053_SNP [dm3] 3L_1689053_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON Eip74EF
3L	2226698	3L_2226698_SNP [dm3] 3L_2226698_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTERGENIC
3L	2287699	3L_2287699_SNP [dm3] 3L_2287699_SNP [dm6]	G	T	2.292e^-8	4.709e^-5	INTRON MsR2
3L	2715232	3L_2715232_SNP [dm3] 3L_2715232_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
3L	3813072	3L_3813072_SNP [dm3] 3L_3813072_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTRON CG12006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3813111	3L_3813111_SNP [dm3] 3L_3813111_SNP [dm6]	T	G	2.292e^-8	4.709e^-5	SPLICE_SITE_REGION CG12006 INTRON CG12006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	5135213	3L_5135213_SNP [dm3] 3L_5142113_SNP [dm6]	T	G	2.292e^-8	4.709e^-5	UTR_5_PRIME CG4623 UPSTREAM CG10672
3L	6152668	3L_6152668_SNP [dm3] 3L_6159568_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UPSTREAM Cpr65Ay INTERGENIC
3L	6766328	3L_6766328_SNP [dm3] 3L_6773228_SNP [dm6]	G	C	2.292e^-8	4.709e^-5	INTERGENIC
3L	6968737	3L_6968737_SNP [dm3] 3L_6975637_SNP [dm6]	A	C	2.292e^-8	4.709e^-5	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7814632	3L_7814632_SNP [dm3] 3L_7821532_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7814638	3L_7814638_DEL [dm3] 3L_7821538_DEL [dm6]	TT	T	2.292e^-8	4.709e^-5	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9138318	3L_9138318_SNP [dm3] 3L_9145218_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	9138581	3L_9138581_INS [dm3] 3L_9145481_INS [dm6]	C	CTCAATTGGAACT...	2.292e^-8	4.709e^-5	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9138648	3L_9138648_SNP [dm3] 3L_9145548_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9138690	3L_9138690_SNP [dm3] 3L_9145590_SNP [dm6]	G	T	2.292e^-8	4.709e^-5	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9141069	3L_9141069_SNP [dm3] 3L_9147969_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UTR_3_PRIME Rdl
3L	9141086	3L_9141086_SNP [dm3] 3L_9147986_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UTR_3_PRIME Rdl
3L	9141092	3L_9141092_INS [dm3] 3L_9147992_INS [dm6]	G	GG	2.292e^-8	4.709e^-5	UTR_3_PRIME Rdl
3L	949547	3L_949547_SNP [dm3] 3L_949547_SNP [dm6]	A	C	2.292e^-8	4.709e^-5	INTRON Glut1
3L	951598	3L_951598_SNP [dm3] 3L_951598_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON Glut1
3L	9594307	3L_9594307_SNP [dm3] 3L_9601207_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
3L	9722336	3L_9722336_SNP [dm3] 3L_9729236_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9878231	3L_9878231_SNP [dm3] 3L_9885131_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING Taf2 DOWNSTREAM CG34382	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10590559	3R_10590559_SNP [dm3] 3R_14764837_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTRON jvl
3R	14015318	3R_14015318_SNP [dm3] 3R_18189596_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14096907	3R_14096907_SNP [dm3] 3R_18271185_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	DOWNSTREAM Vps39 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14097818	3R_14097818_SNP [dm3] 3R_18272096_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	NON_SYNONYMOUS_CODING Vps39 DOWNSTREAM CG18599
3R	14113414	3R_14113414_SNP [dm3] 3R_18287692_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17798766	3R_17798766_SNP [dm3] 3R_21973044_SNP [dm6]	A	C	2.292e^-8	4.709e^-5	INTRON Eip93F	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18350381	3R_18350381_SNP [dm3] 3R_22524659_SNP [dm6]	C	A	2.292e^-8	4.709e^-5	INTRON CG5346	TF binding site mE1_TFBS_sens
3R	19659356	3R_19659356_SNP [dm3] 3R_23833634_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTRON CG34355
3R	19659375	3R_19659375_SNP [dm3] 3R_23833653_SNP [dm6]	C	A	2.292e^-8	4.709e^-5	INTRON CG34355
3R	19659376	3R_19659376_SNP [dm3] 3R_23833654_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTRON CG34355
3R	19659383	3R_19659383_SNP [dm3] 3R_23833661_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTRON CG34355
3R	23059895	3R_23059895_SNP [dm3] 3R_27234173_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG31068 INTRON CG31064
3R	25686409	3R_25686409_SNP [dm3] 3R_29860687_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	UPSTREAM CR31032 & 1 other INTRON CG15514	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25821283	3R_25821283_SNP [dm3] 3R_29995561_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UPSTREAM CG7903 INTRON Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25825511	3R_25825511_SNP [dm3] 3R_29999789_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	UPSTREAM CG34298 & 1 other DOWNSTREAM CG11504 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26467331	3R_26467331_SNP [dm3] 3R_30641609_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26488801	3R_26488801_SNP [dm3] 3R_30663079_SNP [dm6]	C	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	26488840	3R_26488840_SNP [dm3] 3R_30663118_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	7866147	3R_7866147_SNP [dm3] 3R_12040425_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	UPSTREAM CG14736 INTERGENIC
3R	7887325	3R_7887325_SNP [dm3] 3R_12061603_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	SPLICE_SITE_REGION CG14740 SYNONYMOUS_CODING CG14740
3R	8158742	3R_8158742_SNP [dm3] 3R_12333020_SNP [dm6]	C	G	2.292e^-8	4.709e^-5	INTERGENIC
3R	8425081	3R_8425081_SNP [dm3] 3R_12599359_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
3R	8425084	3R_8425084_SNP [dm3] 3R_12599362_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	9249158	3R_9249158_SNP [dm3] 3R_13423436_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	DOWNSTREAM Ir87a INTERGENIC
3R	9254541	3R_9254541_SNP [dm3] 3R_13428819_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	DOWNSTREAM yrt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9274359	3R_9274359_SNP [dm3] 3R_13448637_SNP [dm6]	A	C	2.292e^-8	4.709e^-5	INTERGENIC
3R	9274875	3R_9274875_INS [dm3] 3R_13449153_INS [dm6]	C	CA	2.292e^-8	4.709e^-5	INTERGENIC
3R	9275063	3R_9275063_SNP [dm3] 3R_13449341_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
3R	9279284	3R_9279284_SNP [dm3] 3R_13453562_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTRON CG14372	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9281234	3R_9281234_SNP [dm3] 3R_13455512_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	INTRON CG14372 EXON CR17025
3R	9282003	3R_9282003_SNP [dm3] 3R_13456281_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	SPLICE_SITE_REGION CG14372 INTRON CR17025 & 1 other
3R	9282011	3R_9282011_SNP [dm3] 3R_13456289_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTRON CR17025 & 1 other
3R	9288893	3R_9288893_SNP [dm3] 3R_13463171_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	UTR_3_PRIME CG14372 INTRON CR17025	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9296906	3R_9296906_SNP [dm3] 3R_13471184_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTERGENIC
3R	9296963	3R_9296963_DEL [dm3] 3R_13471241_DEL [dm6]	GAGCTGGG	T	2.292e^-8	4.709e^-5	INTERGENIC
3R	9296972	3R_9296972_SNP [dm3] 3R_13471250_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	9296974	3R_9296974_SNP [dm3] 3R_13471252_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	9296977	3R_9296977_SNP [dm3] 3R_13471255_SNP [dm6]	C	G	2.292e^-8	4.709e^-5	INTERGENIC
3R	9296978	3R_9296978_DEL [dm3] 3R_13471256_DEL [dm6]	TGTAACCTATCT...	T	2.292e^-8	4.709e^-5	INTERGENIC
3R	9297496	3R_9297496_SNP [dm3] 3R_13471774_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	INTERGENIC
3R	9304069	3R_9304069_SNP [dm3] 3R_13478347_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	EXON CR45589
3R	9308812	3R_9308812_SNP [dm3] 3R_13483090_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	9310326	3R_9310326_SNP [dm3] 3R_13484604_SNP [dm6]	C	G	2.292e^-8	4.709e^-5	INTERGENIC
3R	9310374	3R_9310374_SNP [dm3] 3R_13484652_SNP [dm6]	G	A	2.292e^-8	4.709e^-5	INTERGENIC
3R	9320826	3R_9320826_SNP [dm3] 3R_13495104_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTERGENIC
X	12368057	X_12368057_SNP [dm3] X_12474024_SNP [dm6]	G	C	2.292e^-8	4.709e^-5	INTRON CG42258
X	12368058	X_12368058_SNP [dm3] X_12474025_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	INTRON CG42258
X	12368060	X_12368060_SNP [dm3] X_12474027_SNP [dm6]	T	C	2.292e^-8	4.709e^-5	INTRON CG42258
X	12368073	X_12368073_SNP [dm3] X_12474040_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTRON CG42258
X	12368104	X_12368104_SNP [dm3] X_12474071_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON CG42258
X	13363279	X_13363279_SNP [dm3] X_13469246_SNP [dm6]	T	A	2.292e^-8	4.709e^-5	INTRON Neto
X	14889740	X_14889740_SNP [dm3] X_14995707_SNP [dm6]	C	A	2.292e^-8	4.709e^-5	INTRON eag
X	18612306	X_18612306_SNP [dm3] X_18718273_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	INTRON CCKLR-17D1
X	4425608	X_4425608_SNP [dm3] X_4531575_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	NON_SYNONYMOUS_CODING CG3556 INTRON CR32773
X	4425747	X_4425747_SNP [dm3] X_4531714_SNP [dm6]	C	T	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING CG3556 INTRON CR32773
X	5389061	X_5389061_SNP [dm3] X_5495028_SNP [dm6]	A	G	2.292e^-8	4.709e^-5	SYNONYMOUS_CODING frma
X	9227354	X_9227354_SNP [dm3] X_9333321_SNP [dm6]	A	T	2.292e^-8	4.709e^-5	INTRON CG34449
X	9291498	X_9291498_SNP [dm3] X_9397465_SNP [dm6]	C	G	2.292e^-8	4.709e^-5	INTRON mgl
2R	7457715	2R_7457715_SNP [dm3] 2R_11570210_SNP [dm6]	G	T	2.329e^-8	4.769e^-5	INTERGENIC
3L	4113583	3L_4113583_SNP [dm3] 3L_4113583_SNP [dm6]	A	G	2.329e^-8	4.769e^-5	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18994768	X_18994768_SNP [dm3] X_19100735_SNP [dm6]	T	G	2.329e^-8	4.769e^-5	INTERGENIC
2L	1188933	2L_1188933_DEL [dm3] 2L_1188933_DEL [dm6]	GTGGAATGTAG...	G	2.424e^-8	4.957e^-5	INTRON CG5001
2L	18233260	2L_18233260_INS [dm3] 2L_18233260_INS [dm6]	T	TTCCTT	2.472e^-8	5.017e^-5	INTRON CG42750
2L	18240654	2L_18240654_SNP [dm3] 2L_18240654_SNP [dm6]	T	A	2.472e^-8	5.017e^-5	INTRON CG42750
2L	18251281	2L_18251281_SNP [dm3] 2L_18251281_SNP [dm6]	C	G	2.472e^-8	5.017e^-5	UPSTREAM CG43406 INTRON CG42750
2L	18252240	2L_18252240_SNP [dm3] 2L_18252240_SNP [dm6]	G	A	2.472e^-8	5.017e^-5	DOWNSTREAM CG43406 INTRON CG42750 & 1 other
2L	18591611	2L_18591611_SNP [dm3] 2L_18591611_SNP [dm6]	A	C	2.472e^-8	5.017e^-5	INTRON CG15160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sbb
2L	18591621	2L_18591621_SNP [dm3] 2L_18591621_SNP [dm6]	A	C	2.472e^-8	5.017e^-5	INTRON CG15160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sbb
2L	18591959	2L_18591959_SNP [dm3] 2L_18591959_SNP [dm6]	A	G	2.472e^-8	5.017e^-5	SYNONYMOUS_CODING CG15160	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2R	17584565	2R_17584565_SNP [dm3] 2R_21697060_SNP [dm6]	C	T	2.489e^-8	5.047e^-5	SPLICE_SITE_REGION CngB UTR_5_PRIME CngB UPSTREAM CngB DOWNSTREAM HmgZ
2R	15593563	2R_15593563_SNP [dm3] 2R_19706058_SNP [dm6]	A	G	2.502e^-8	5.067e^-5	INTERGENIC	regulatory region REDfly_CRMs
X	16985991	X_16985991_SNP [dm3] X_17091958_SNP [dm6]	G	T	2.546e^-8	5.151e^-5	START_GAINED CG16700 & 1 other UTR_5_PRIME CG16700 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10774254	2R_10774254_SNP [dm3] 2R_14886749_SNP [dm6]	T	G	2.589e^-8	5.233e^-5	SYNONYMOUS_CODING Cyp6a21 DOWNSTREAM Cyp6a8
2R	15593511	2R_15593511_INS [dm3] 2R_19706006_INS [dm6]	T	TT	2.675e^-8	5.399e^-5	INTERGENIC	regulatory region REDfly_CRMs
2L	16237040	2L_16237040_SNP [dm3] 2L_16237040_SNP [dm6]	A	G	2.683e^-8	5.409e^-5	INTRON CG42817
2L	16236406	2L_16236406_SNP [dm3] 2L_16236406_SNP [dm6]	C	T	2.745e^-8	5.505e^-5	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
2L	4699779	2L_4699779_DEL [dm3] 2L_4699779_DEL [dm6]	TG	T	2.745e^-8	5.505e^-5	INTRON CG34351
2R	7461806	2R_7461806_INS [dm3] 2R_11574301_INS [dm6]	G	GG	2.745e^-8	5.505e^-5	INTERGENIC
3L	13256500	3L_13256500_INS [dm3] 3L_13263400_INS [dm6]	A	ATAGTAATAGTAATAATAAT...	2.745e^-8	5.505e^-5	INTRON caps	enhancer mE1_CBP_Enhancers
3L	13256504	3L_13256504_SNP [dm3] 3L_13263404_SNP [dm6]	C	T	2.745e^-8	5.505e^-5	INTRON caps	enhancer mE1_CBP_Enhancers
3R	16054499	3R_16054499_DEL [dm3] 3R_20228777_DEL [dm6]	AACTAACTA	A	2.793e^-8	5.596e^-5	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2L	9224177	2L_9224177_SNP [dm3] 2L_9224177_SNP [dm6]	C	T	2.815e^-8	5.632e^-5	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	18386846	3R_18386846_SNP [dm3] 3R_22561124_SNP [dm6]	A	G	2.918e^-8	5.832e^-5	INTRON CG5278
2L	8462121	2L_8462121_SNP [dm3] 2L_8462121_SNP [dm6]	A	G	3.113e^-8	6.215e^-5	INTRON fu12
2L	4452613	2L_4452613_SNP [dm3] 2L_4452613_SNP [dm6]	A	G	3.202e^-8	6.379e^-5	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4452979	2L_4452979_SNP [dm3] 2L_4452979_SNP [dm6]	G	T	3.202e^-8	6.379e^-5	UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4909659	2R_4909659_SNP [dm3] 2R_9022154_SNP [dm6]	G	A	3.230e^-8	6.429e^-5	SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8549971	3L_8549971_SNP [dm3] 3L_8556871_SNP [dm6]	C	A	3.378e^-8	6.570e^-5	INTRON rhea	TF binding site BDTNP1_TFBS_dl
2L	4452622	2L_4452622_SNP [dm3] 2L_4452622_SNP [dm6]	A	G	3.440e^-8	6.570e^-5	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1192520	2L_1192520_SNP [dm3] 2L_1192520_SNP [dm6]	A	C	3.479e^-8	6.570e^-5	SYNONYMOUS_CODING CG5001	TF binding site mE1_TFBS_cad
2R	17136161	2R_17136161_SNP [dm3] 2R_21248656_SNP [dm6]	A	C	3.523e^-8	6.570e^-5	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4415497	2L_4415497_SNP [dm3] 2L_4415497_SNP [dm6]	G	C	3.593e^-8	6.570e^-5	INTRON CG15431
2L	4416155	2L_4416155_SNP [dm3] 2L_4416155_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	INTRON CG15431
2L	4418705	2L_4418705_SNP [dm3] 2L_4418705_SNP [dm6]	G	T	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418749	2L_4418749_SNP [dm3] 2L_4418749_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418772	2L_4418772_SNP [dm3] 2L_4418772_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418775	2L_4418775_DEL [dm3] 2L_4418775_DEL [dm6]	AACCAAAACGTGGTAAATTA...	A	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418856	2L_4418856_SNP [dm3] 2L_4418856_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418866	2L_4418866_INS [dm3] 2L_4418866_INS [dm6]	A	ATAATGAAA	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418875	2L_4418875_SNP [dm3] 2L_4418875_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4418915	2L_4418915_SNP [dm3] 2L_4418915_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2R	14617568	2R_14617568_SNP [dm3] 2R_18730063_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	SYNONYMOUS_CODING List INTRON Hs3st-A
2R	17137889	2R_17137889_SNP [dm3] 2R_21250384_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	17138976	2R_17138976_SNP [dm3] 2R_21251471_SNP [dm6]	G	A	3.593e^-8	6.570e^-5	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17140355	2R_17140355_SNP [dm3] 2R_21252850_SNP [dm6]	T	A	3.593e^-8	6.570e^-5	INTERGENIC
2R	17140539	2R_17140539_SNP [dm3] 2R_21253034_SNP [dm6]	G	A	3.593e^-8	6.570e^-5	INTERGENIC
2R	19184443	2R_19184443_SNP [dm3] 2R_23296920_SNP [dm6]	G	C	3.593e^-8	6.570e^-5	INTERGENIC
2R	19223819	2R_19223819_SNP [dm3] 2R_23336296_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	INTERGENIC
2R	7463873	2R_7463873_SNP [dm3] 2R_11576368_SNP [dm6]	G	T	3.593e^-8	6.570e^-5	INTERGENIC
3L	1015574	3L_1015574_SNP [dm3] 3L_1015574_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	INTRON trio
3L	1293626	3L_1293626_SNP [dm3] 3L_1293626_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	SYNONYMOUS_CODING CG32333
3L	1307795	3L_1307795_SNP [dm3] 3L_1307795_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	UPSTREAM CG2277 INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14156761	3L_14156761_SNP [dm3] 3L_14163661_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	INTERGENIC	regulatory region REDfly_CRMs
3L	16010943	3L_16010943_SNP [dm3] 3L_16017843_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	17998494	3L_17998494_SNP [dm3] 3L_18005394_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	19028799	3L_19028799_SNP [dm3] 3L_19035699_SNP [dm6]	G	A	3.593e^-8	6.570e^-5	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3588408	3L_3588408_SNP [dm3] 3L_3588408_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	INTRON Eip63E
3L	5329077	3L_5329077_SNP [dm3] 3L_5335977_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	DOWNSTREAM CR45742 INTERGENIC
3R	14090104	3R_14090104_SNP [dm3] 3R_18264382_SNP [dm6]	A	T	3.593e^-8	6.570e^-5	INTERGENIC
3R	14091042	3R_14091042_DEL [dm3] 3R_18265320_DEL [dm6]	ATTAGTA	GG	3.593e^-8	6.570e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15075433	3R_15075433_SNP [dm3] 3R_19249711_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15813682	3R_15813682_SNP [dm3] 3R_19987960_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	16112502	3R_16112502_SNP [dm3] 3R_20286780_SNP [dm6]	G	T	3.593e^-8	6.570e^-5	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16112820	3R_16112820_SNP [dm3] 3R_20287098_SNP [dm6]	T	G	3.593e^-8	6.570e^-5	INTRON cic	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16112827	3R_16112827_DEL [dm3] 3R_20287105_DEL [dm6]	GATGG	A	3.593e^-8	6.570e^-5	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16112876	3R_16112876_MNP [dm3] 3R_20287154_MNP [dm6]	ACT	CTA	3.593e^-8	6.570e^-5	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16112901	3R_16112901_SNP [dm3] 3R_20287179_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16118197	3R_16118197_SNP [dm3] 3R_20292475_SNP [dm6]	T	G	3.593e^-8	6.570e^-5	UPSTREAM cic INTRON cic	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	16647137	3R_16647137_SNP [dm3] 3R_20821415_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	UPSTREAM RpS20 INTRON CG17271	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	18094639	3R_18094639_SNP [dm3] 3R_22268917_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	INTRON SKIP
3R	18241365	3R_18241365_SNP [dm3] 3R_22415643_SNP [dm6]	G	T	3.593e^-8	6.570e^-5	NON_SYNONYMOUS_CODING lqfR INTRON lqfR
3R	18843017	3R_18843017_SNP [dm3] 3R_23017295_SNP [dm6]	A	T	3.593e^-8	6.570e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	19371535	3R_19371535_SNP [dm3] 3R_23545813_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19373779	3R_19373779_SNP [dm3] 3R_23548057_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	INTERGENIC
3R	19373805	3R_19373805_SNP [dm3] 3R_23548083_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	INTERGENIC
3R	19374231	3R_19374231_SNP [dm3] 3R_23548509_SNP [dm6]	G	C	3.593e^-8	6.570e^-5	INTERGENIC
3R	19380773	3R_19380773_SNP [dm3] 3R_23555051_SNP [dm6]	A	T	3.593e^-8	6.570e^-5	SYNONYMOUS_CODING CG10164
3R	19673490	3R_19673490_SNP [dm3] 3R_23847768_SNP [dm6]	T	A	3.593e^-8	6.570e^-5	INTRON CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22982991	3R_22982991_SNP [dm3] 3R_27157269_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
3R	4826303	3R_4826303_SNP [dm3] 3R_9000581_SNP [dm6]	G	A	3.593e^-8	6.570e^-5	INTRON CG31100
3R	6509961	3R_6509961_DEL [dm3] 3R_10684239_DEL [dm6]	AA	A	3.593e^-8	6.570e^-5	EXON CR44230
3R	6510201	3R_6510201_SNP [dm3] 3R_10684479_SNP [dm6]	T	A	3.593e^-8	6.570e^-5	DOWNSTREAM CR44230 INTERGENIC
3R	6510249	3R_6510249_SNP [dm3] 3R_10684527_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	DOWNSTREAM CR44230 INTERGENIC
3R	6520798	3R_6520798_SNP [dm3] 3R_10695076_SNP [dm6]	A	C	3.593e^-8	6.570e^-5	NON_SYNONYMOUS_CODING Skeletor UTR_3_PRIME Skeletor	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6525045	3R_6525045_SNP [dm3] 3R_10699323_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	UPSTREAM pug DOWNSTREAM CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7899228	3R_7899228_SNP [dm3] 3R_12073506_SNP [dm6]	C	G	3.593e^-8	6.570e^-5	SYNONYMOUS_CODING CG14741
3R	9251449	3R_9251449_SNP [dm3] 3R_13425727_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9251454	3R_9251454_SNP [dm3] 3R_13425732_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9256910	3R_9256910_SNP [dm3] 3R_13431188_SNP [dm6]	G	C	3.593e^-8	6.570e^-5	INTRON yrt
3R	9297919	3R_9297919_DEL [dm3] 3R_13472197_DEL [dm6]	CC	C	3.593e^-8	6.570e^-5	INTERGENIC
3R	9322353	3R_9322353_SNP [dm3] 3R_13496631_SNP [dm6]	C	A	3.593e^-8	6.570e^-5	INTERGENIC
3R	9539959	3R_9539959_SNP [dm3] 3R_13714237_SNP [dm6]	G	C	3.593e^-8	6.570e^-5	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9540284	3R_9540284_SNP [dm3] 3R_13714562_SNP [dm6]	C	G	3.593e^-8	6.570e^-5	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9723620	3R_9723620_SNP [dm3] 3R_13897898_SNP [dm6]	A	T	3.593e^-8	6.570e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	11553622	X_11553622_SNP [dm3] X_11659589_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	INTRON Ptp10D
X	12351715	X_12351715_SNP [dm3] X_12457682_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	INTRON CG15731	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12353740	X_12353740_SNP [dm3] X_12459707_SNP [dm6]	C	T	3.593e^-8	6.570e^-5	DOWNSTREAM Rab40 INTERGENIC
X	15906673	X_15906673_SNP [dm3] X_16012640_SNP [dm6]	A	G	3.593e^-8	6.570e^-5	NON_SYNONYMOUS_CODING Muc14A
X	16270023	X_16270023_SNP [dm3] X_16375990_SNP [dm6]	T	C	3.593e^-8	6.570e^-5	SYNONYMOUS_CODING Fur2	TF binding site mE1_TFBS_sens
X	17181699	X_17181699_INS [dm3] X_17287666_INS [dm6]	T	TA	3.593e^-8	6.570e^-5	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_MB_Alpha_Thin phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results