DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.844e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2807 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16995380	2L_16995380_SNP [dm3] 2L_16995380_SNP [dm6]	G	C	5.991e^-7	0.35	INTERGENIC
2L	9126793	2L_9126793_SNP [dm3] 2L_9126793_SNP [dm6]	C	T	1.082e^-6	0.35	UTR_5_PRIME CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	4924608	3R_4924608_SNP [dm3] 3R_9098886_SNP [dm6]	T	C	1.148e^-6	0.35	INTRON pum
3L	6967601	3L_6967601_SNP [dm3] 3L_6974501_SNP [dm6]	T	A	1.260e^-6	0.35	INTRON Galphai
2L	14010458	2L_14010458_DEL [dm3] 2L_14010458_DEL [dm6]	AGCCGTTGCGGATTTGGTCG...	A	1.457e^-6	0.35	DOWNSTREAM tRNA:Q:34E INTERGENIC
3R	27465270	3R_27465270_SNP [dm3] 3R_31639548_SNP [dm6]	C	T	1.489e^-6	0.35	INTRON kek6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12076080	2R_12076080_SNP [dm3] 2R_16188575_SNP [dm6]	T	C	1.889e^-6	0.35	SPLICE_SITE_REGION clu INTRON clu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10884870	3R_10884870_SNP [dm3] 3R_15059148_SNP [dm6]	A	G	2.128e^-6	0.35	INTRON dpr9
X	10864333	X_10864333_DEL [dm3] X_10970300_DEL [dm6]	TGCTGCT	T	2.772e^-6	0.35	INTRON CG42339
3R	23071265	3R_23071265_SNP [dm3] 3R_27245543_SNP [dm6]	C	G	2.806e^-6	0.35	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14760371	2R_14760371_SNP [dm3] 2R_18872866_SNP [dm6]	G	A	2.911e^-6	0.35	INTERGENIC
3R	23071399	3R_23071399_SNP [dm3] 3R_27245677_SNP [dm6]	A	G	3.307e^-6	0.35	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	6967608	3L_6967608_SNP [dm3] 3L_6974508_SNP [dm6]	G	T	4.698e^-6	0.35	INTRON Galphai
3R	17952777	3R_17952777_SNP [dm3] 3R_22127055_SNP [dm6]	A	T	4.700e^-6	0.35	INTRON CG42390
3L	2997856	3L_2997856_SNP [dm3] 3L_2997856_SNP [dm6]	G	T	5.190e^-6	0.35	INTERGENIC
2L	7040005	2L_7040005_SNP [dm3] 2L_7040005_SNP [dm6]	A	T	5.271e^-6	0.35	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23070775	3R_23070775_SNP [dm3] 3R_27245053_SNP [dm6]	T	C	5.693e^-6	0.35	UTR_5_PRIME CG18766 UPSTREAM CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23070937	3R_23070937_SNP [dm3] 3R_27245215_SNP [dm6]	G	A	5.693e^-6	0.35	UTR_5_PRIME CG18766 UPSTREAM CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12076074	2R_12076074_SNP [dm3] 2R_16188569_SNP [dm6]	C	A	5.804e^-6	0.35	INTRON clu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17373688	2R_17373688_SNP [dm3] 2R_21486183_SNP [dm6]	T	C	6.040e^-6	0.35	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
X	7743135	X_7743135_SNP [dm3] X_7849102_SNP [dm6]	C	G	6.080e^-6	0.35	INTERGENIC
3L	15685324	3L_15685324_SNP [dm3] 3L_15692224_SNP [dm6]	G	C	6.397e^-6	0.35	UPSTREAM CG34451 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	9358401	3L_9358401_SNP [dm3] 3L_9365301_SNP [dm6]	T	A	6.464e^-6	0.35	DOWNSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4954723	3R_4954723_SNP [dm3] 3R_9129001_SNP [dm6]	A	C	6.584e^-6	0.35	INTRON pum	TF binding site mE1_TFBS_Trl
2L	7824249	2L_7824249_SNP [dm3] 2L_7824249_SNP [dm6]	A	G	6.606e^-6	0.35	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7824318	2L_7824318_SNP [dm3] 2L_7824318_SNP [dm6]	A	G	6.606e^-6	0.35	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8128600	3R_8128600_SNP [dm3] 3R_12302878_SNP [dm6]	A	T	6.741e^-6	0.35	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
3R	10884948	3R_10884948_SNP [dm3] 3R_15059226_SNP [dm6]	T	G	6.767e^-6	0.35	INTRON dpr9
2L	7824403	2L_7824403_SNP [dm3] 2L_7824403_SNP [dm6]	A	T	6.770e^-6	0.35	DOWNSTREAM Rack1 INTRON CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11176165	X_11176165_SNP [dm3] X_11282132_SNP [dm6]	C	A	6.931e^-6	0.35	INTRON CG44422
3R	23070485	3R_23070485_SNP [dm3] 3R_27244763_SNP [dm6]	T	A	6.940e^-6	0.35	START_GAINED CG18766 UTR_5_PRIME CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8887137	2R_8887137_SNP [dm3] 2R_12999632_SNP [dm6]	T	A	7.019e^-6	0.35	INTRON Su_z_2	TF binding site mE1_TFBS_HSA
3L	8873948	3L_8873948_DEL [dm3] 3L_8880848_DEL [dm6]	CTCTTGTTGATGTATC...	C	7.019e^-6	0.35	INTRON dally
3L	8873997	3L_8873997_SNP [dm3] 3L_8880897_SNP [dm6]	G	T	7.019e^-6	0.35	INTRON dally
3R	10885047	3R_10885047_SNP [dm3] 3R_15059325_SNP [dm6]	T	A	7.019e^-6	0.35	INTRON dpr9
3R	10885214	3R_10885214_SNP [dm3] 3R_15059492_SNP [dm6]	T	C	7.019e^-6	0.35	INTRON dpr9
3R	10885215	3R_10885215_SNP [dm3] 3R_15059493_SNP [dm6]	A	C	7.019e^-6	0.35	INTRON dpr9
3R	17952796	3R_17952796_SNP [dm3] 3R_22127074_SNP [dm6]	T	A	7.589e^-6	0.353	INTRON CG42390
2L	6789406	2L_6789406_SNP [dm3] 2L_6789406_SNP [dm6]	A	G	7.592e^-6	0.353	DOWNSTREAM nrv2 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	10889899	3R_10889899_SNP [dm3] 3R_15064177_SNP [dm6]	G	C	7.681e^-6	0.353	INTRON dpr9
3L	3706189	3L_3706189_SNP [dm3] 3L_3706189_SNP [dm6]	T	C	7.844e^-6	0.353	INTERGENIC
3R	10884920	3R_10884920_SNP [dm3] 3R_15059198_SNP [dm6]	T	A	8.297e^-6	0.364	INTRON dpr9
3L	12680458	3L_12680458_SNP [dm3] 3L_12687358_SNP [dm6]	T	A	9.654e^-6	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3013935	3L_3013935_SNP [dm3] 3L_3013935_SNP [dm6]	A	G	1.030e^-5	0.398	DOWNSTREAM CG32488 INTERGENIC
3R	15314846	3R_15314846_SNP [dm3] 3R_19489124_SNP [dm6]	A	G	1.060e^-5	0.398	DOWNSTREAM CG15025 INTRON Dys
3R	15314912	3R_15314912_SNP [dm3] 3R_19489190_SNP [dm6]	T	G	1.060e^-5	0.398	DOWNSTREAM CG15025 INTRON Dys
2R	16529181	2R_16529181_DEL [dm3] 2R_20641676_DEL [dm6]	TCTGCATCGCCT...	T	1.086e^-5	0.398	UPSTREAM rig & 1 other DOWNSTREAM CG33785 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4924610	3R_4924610_SNP [dm3] 3R_9098888_SNP [dm6]	T	A	1.133e^-5	0.398	INTRON pum
2R	19390961	2R_19390961_SNP [dm3] 2R_23503438_SNP [dm6]	A	G	1.147e^-5	0.398	NON_SYNONYMOUS_CODING CG13559
3R	10884539	3R_10884539_SNP [dm3] 3R_15058817_SNP [dm6]	T	C	1.169e^-5	0.398	INTRON dpr9
3R	4862576	3R_4862576_SNP [dm3] 3R_9036854_SNP [dm6]	A	C	1.184e^-5	0.398	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4865238	3R_4865238_SNP [dm3] 3R_9039516_SNP [dm6]	C	T	1.184e^-5	0.398	UPSTREAM hyx & 1 other INTRON hyx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	15255073	2L_15255073_SNP [dm3] 2L_15255073_SNP [dm6]	A	T	1.275e^-5	0.398	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
3R	27465163	3R_27465163_SNP [dm3] 3R_31639441_SNP [dm6]	T	C	1.333e^-5	0.398	INTRON kek6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10608411	2R_10608411_SNP [dm3] 2R_14720906_SNP [dm6]	A	G	1.336e^-5	0.398	INTERGENIC
3L	1414838	3L_1414838_SNP [dm3] 3L_1414838_SNP [dm6]	C	A	1.438e^-5	0.398	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
2R	10941832	2R_10941832_SNP [dm3] 2R_15054327_SNP [dm6]	C	T	1.453e^-5	0.398	INTERGENIC
3R	24202072	3R_24202072_SNP [dm3] 3R_28376350_SNP [dm6]	C	A	1.458e^-5	0.398	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	12194215	3L_12194215_SNP [dm3] 3L_12201115_SNP [dm6]	C	T	1.489e^-5	0.398	INTRON Adk1
3L	3706179	3L_3706179_SNP [dm3] 3L_3706179_SNP [dm6]	A	C	1.499e^-5	0.398	INTERGENIC
3L	3706229	3L_3706229_MNP [dm3] 3L_3706229_MNP [dm6]	AAA	GCC	1.499e^-5	0.398	INTERGENIC
3R	17952791	3R_17952791_SNP [dm3] 3R_22127069_SNP [dm6]	C	T	1.508e^-5	0.398	INTRON CG42390
3R	17952801	3R_17952801_SNP [dm3] 3R_22127079_SNP [dm6]	T	A	1.508e^-5	0.398	INTRON CG42390
3R	16553115	3R_16553115_DEL [dm3] 3R_20727393_DEL [dm6]	AATTAA	A	1.531e^-5	0.398	INTERGENIC
2R	17762037	2R_17762037_SNP [dm3] 2R_21874532_SNP [dm6]	A	C	1.566e^-5	0.398	INTRON Fili	TF binding site BDTNP1_TFBS_da
2R	17762038	2R_17762038_SNP [dm3] 2R_21874533_SNP [dm6]	T	A	1.566e^-5	0.398	INTRON Fili	TF binding site BDTNP1_TFBS_da
3R	4864146	3R_4864146_SNP [dm3] 3R_9038424_SNP [dm6]	G	T	1.644e^-5	0.398	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13822283	3L_13822283_SNP [dm3] 3L_13829183_SNP [dm6]	C	T	1.649e^-5	0.398	INTERGENIC
3L	13822291	3L_13822291_SNP [dm3] 3L_13829191_SNP [dm6]	G	A	1.649e^-5	0.398	INTERGENIC
3L	1557737	3L_1557737_SNP [dm3] 3L_1557737_SNP [dm6]	A	T	1.703e^-5	0.398	UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8440230	2R_8440230_SNP [dm3] 2R_12552725_SNP [dm6]	C	T	1.712e^-5	0.398	INTRON fra
X	13822247	X_13822247_SNP [dm3] X_13928214_SNP [dm6]	C	T	1.740e^-5	0.398	INTRON mamo
3L	15681209	3L_15681209_DEL [dm3] 3L_15688109_DEL [dm6]	AAAATAACACCGCACGGTCA...	A	1.746e^-5	0.398	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3706223	3L_3706223_SNP [dm3] 3L_3706223_SNP [dm6]	T	C	1.805e^-5	0.398	INTERGENIC
3R	2801803	3R_2801803_SNP [dm3] 3R_6976081_SNP [dm6]	C	T	1.820e^-5	0.398	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	11635359	3L_11635359_SNP [dm3] 3L_11642259_SNP [dm6]	A	G	1.875e^-5	0.398	SYNONYMOUS_CODING CG32091 DOWNSTREAM CG6071	TF binding site mE1_TFBS_HSA
3L	11638515	3L_11638515_SNP [dm3] 3L_11645415_SNP [dm6]	A	C	1.875e^-5	0.398	DOWNSTREAM RIOK1 INTRON CG6071
3L	11638533	3L_11638533_SNP [dm3] 3L_11645433_SNP [dm6]	A	G	1.875e^-5	0.398	DOWNSTREAM RIOK1 INTRON CG6071
3L	11638553	3L_11638553_SNP [dm3] 3L_11645453_SNP [dm6]	T	G	1.875e^-5	0.398	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM RIOK1
3L	11642854	3L_11642854_SNP [dm3] 3L_11649754_SNP [dm6]	C	T	1.875e^-5	0.398	UTR_3_PRIME CG7339 DOWNSTREAM CG32085
3L	911148	3L_911148_SNP [dm3] 3L_911148_SNP [dm6]	A	G	1.875e^-5	0.398	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	17952751	3R_17952751_SNP [dm3] 3R_22127029_SNP [dm6]	T	A	1.875e^-5	0.398	INTRON CG42390
3L	7162672	3L_7162672_SNP [dm3] 3L_7169572_SNP [dm6]	T	C	1.916e^-5	0.398	INTRON Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12937534	X_12937534_SNP [dm3] X_13043501_SNP [dm6]	A	C	1.932e^-5	0.398	INTRON rad
3L	3706061	3L_3706061_SNP [dm3] 3L_3706061_SNP [dm6]	G	T	1.934e^-5	0.398	INTERGENIC
3L	3706185	3L_3706185_SNP [dm3] 3L_3706185_SNP [dm6]	T	A	1.934e^-5	0.398	INTERGENIC
3R	16223570	3R_16223570_SNP [dm3] 3R_20397848_SNP [dm6]	T	G	1.945e^-5	0.398	INTRON Gfrl
3R	17878847	3R_17878847_SNP [dm3] 3R_22053125_SNP [dm6]	A	G	1.996e^-5	0.398	INTRON how	TF binding site BDTNP1_TFBS_dl
3R	17879003	3R_17879003_SNP [dm3] 3R_22053281_SNP [dm6]	G	A	1.996e^-5	0.398	INTRON how	regulatory region REDfly_CRMs
3L	2997925	3L_2997925_SNP [dm3] 3L_2997925_SNP [dm6]	C	T	2.043e^-5	0.398	INTERGENIC
3L	13868345	3L_13868345_SNP [dm3] 3L_13875245_SNP [dm6]	C	T	2.046e^-5	0.398	INTRON dysc
2R	13690387	2R_13690387_SNP [dm3] 2R_17802882_SNP [dm6]	C	T	2.066e^-5	0.398	UTR_5_PRIME grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18428495	2R_18428495_SNP [dm3] 2R_22540990_SNP [dm6]	A	C	2.116e^-5	0.398	INTRON px
2L	9061993	2L_9061993_SNP [dm3] 2L_9061993_SNP [dm6]	T	C	2.192e^-5	0.398	INTRON CG31708	TF binding site BDTNP1_TFBS_twi
3R	4924604	3R_4924604_SNP [dm3] 3R_9098882_SNP [dm6]	T	G	2.192e^-5	0.398	INTRON pum
3R	4924611	3R_4924611_DEL [dm3] 3R_9098889_DEL [dm6]	TC	T	2.192e^-5	0.398	INTRON pum
X	17454352	X_17454352_SNP [dm3] X_17560319_SNP [dm6]	G	A	2.208e^-5	0.398	INTRON CG43658
X	17454561	X_17454561_INS [dm3] X_17560528_INS [dm6]	T	TA	2.208e^-5	0.398	INTRON CG43658
3R	7876536	3R_7876536_SNP [dm3] 3R_12050814_SNP [dm6]	A	G	2.222e^-5	0.398	INTERGENIC
3R	4341466	3R_4341466_INS [dm3] 3R_8515744_INS [dm6]	T	TT	2.267e^-5	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8268298	3L_8268298_SNP [dm3] 3L_8275198_SNP [dm6]	C	T	2.291e^-5	0.398	INTRON Dscam4
3R	23072076	3R_23072076_SNP [dm3] 3R_27246354_SNP [dm6]	A	C	2.304e^-5	0.398	DOWNSTREAM CG5984 INTERGENIC
3R	2422906	3R_2422906_SNP [dm3] 3R_6597184_SNP [dm6]	G	C	2.308e^-5	0.398	NON_SYNONYMOUS_CODING CG1138
3R	16553147	3R_16553147_SNP [dm3] 3R_20727425_SNP [dm6]	T	A	2.379e^-5	0.398	INTERGENIC
X	6185404	X_6185404_SNP [dm3] X_6291371_SNP [dm6]	G	A	2.398e^-5	0.398	UTR_5_PRIME CG15896 UPSTREAM Rpt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6185408	X_6185408_SNP [dm3] X_6291375_SNP [dm6]	G	A	2.398e^-5	0.398	UTR_5_PRIME CG15896 UPSTREAM Rpt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10884934	3R_10884934_SNP [dm3] 3R_15059212_SNP [dm6]	G	A	2.435e^-5	0.398	INTRON dpr9
3R	27464934	3R_27464934_DEL [dm3] 3R_31639212_DEL [dm6]	TT	T	2.500e^-5	0.398	INTRON kek6	TF binding site mE1_TFBS_inv
3L	2191747	3L_2191747_SNP [dm3] 3L_2191747_SNP [dm6]	T	A	2.561e^-5	0.398	UPSTREAM CG5707 INTRON CG5707
3R	4864153	3R_4864153_DEL [dm3] 3R_9038431_DEL [dm6]	TCTT	T	2.569e^-5	0.398	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7508194	2R_7508194_SNP [dm3] 2R_11620689_SNP [dm6]	C	G	2.573e^-5	0.398	UTR_3_PRIME CG9005	TF binding site BDTNP1_TFBS_da
2L	7742477	2L_7742477_SNP [dm3] 2L_7742477_SNP [dm6]	A	C	2.593e^-5	0.398	UPSTREAM Acp1 INTERGENIC
2R	12879296	2R_12879296_SNP [dm3] 2R_16991791_SNP [dm6]	T	C	2.668e^-5	0.398	INTRON Cbp53E
3L	11638505	3L_11638505_SNP [dm3] 3L_11645405_SNP [dm6]	C	G	2.678e^-5	0.398	DOWNSTREAM RIOK1 INTRON CG6071
2L	7823447	2L_7823447_SNP [dm3] 2L_7823447_SNP [dm6]	C	T	2.684e^-5	0.398	SPLICE_SITE_REGION CG7115 INTRON CG7115
2R	5676283	2R_5676283_SNP [dm3] 2R_9788778_SNP [dm6]	T	G	2.708e^-5	0.398	INTRON CG1688 EXON CR44208
3L	10259743	3L_10259743_DEL [dm3] 3L_10266643_DEL [dm6]	TCCTTTTTG	T	2.799e^-5	0.398	INTRON can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14976440	2R_14976440_SNP [dm3] 2R_19088935_SNP [dm6]	A	T	2.809e^-5	0.398	INTRON 5-HT1A
2L	6907110	2L_6907110_SNP [dm3] 2L_6907110_SNP [dm6]	A	G	2.824e^-5	0.398	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
2L	1190809	2L_1190809_SNP [dm3] 2L_1190809_SNP [dm6]	G	A	2.896e^-5	0.398	INTRON CG5001
2L	13352364	2L_13352364_SNP [dm3] 2L_13352364_SNP [dm6]	T	C	2.921e^-5	0.398	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
3L	9818012	3L_9818012_SNP [dm3] 3L_9824912_SNP [dm6]	G	A	2.925e^-5	0.398	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
3R	16223567	3R_16223567_SNP [dm3] 3R_20397845_SNP [dm6]	T	C	2.927e^-5	0.398	INTRON Gfrl
3R	9585922	3R_9585922_SNP [dm3] 3R_13760200_SNP [dm6]	C	G	2.928e^-5	0.398	INTRON CG34383
3L	1557720	3L_1557720_SNP [dm3] 3L_1557720_SNP [dm6]	G	T	2.947e^-5	0.398	SPLICE_SITE_REGION CG12099 UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1557760	3L_1557760_SNP [dm3] 3L_1557760_SNP [dm6]	T	C	2.947e^-5	0.398	UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15255046	2L_15255046_SNP [dm3] 2L_15255046_SNP [dm6]	C	T	2.949e^-5	0.398	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2L	12708157	2L_12708157_SNP [dm3] 2L_12708157_SNP [dm6]	G	A	2.981e^-5	0.398	SYNONYMOUS_CODING CG6180 UPSTREAM CG15484 DOWNSTREAM CG5787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	17952725	3R_17952725_SNP [dm3] 3R_22127003_SNP [dm6]	A	G	2.983e^-5	0.398	INTRON CG42390
3R	9304196	3R_9304196_SNP [dm3] 3R_13478474_SNP [dm6]	T	C	3.020e^-5	0.398	EXON CR45589
2R	17762003	2R_17762003_SNP [dm3] 2R_21874498_SNP [dm6]	A	T	3.062e^-5	0.398	INTRON Fili	TF binding site BDTNP1_TFBS_da
3R	15281389	3R_15281389_SNP [dm3] 3R_19455667_SNP [dm6]	G	C	3.214e^-5	0.398	INTRON CG31221
3R	17952731	3R_17952731_DEL [dm3] 3R_22127009_DEL [dm6]	TCT	T	3.214e^-5	0.398	INTRON CG42390
3R	17952737	3R_17952737_SNP [dm3] 3R_22127015_SNP [dm6]	T	G	3.214e^-5	0.398	INTRON CG42390
2R	13558073	2R_13558073_SNP [dm3] 2R_17670568_SNP [dm6]	G	A	3.239e^-5	0.398	UTR_3_PRIME CG30109 UPSTREAM CR44404 DOWNSTREAM CG30108 & 1 other	TF binding site mE1_TFBS_sens
3R	26851640	3R_26851640_SNP [dm3] 3R_31025918_SNP [dm6]	A	G	3.309e^-5	0.398	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26745838	3R_26745838_SNP [dm3] 3R_30920116_SNP [dm6]	A	G	3.311e^-5	0.398	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2769706	3R_2769706_SNP [dm3] 3R_6943984_SNP [dm6]	T	C	3.343e^-5	0.398	INTRON Antp
2R	10219682	2R_10219682_SNP [dm3] 2R_14332177_SNP [dm6]	G	A	3.418e^-5	0.398	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10219687	2R_10219687_SNP [dm3] 2R_14332182_SNP [dm6]	C	G	3.418e^-5	0.398	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10219689	2R_10219689_SNP [dm3] 2R_14332184_SNP [dm6]	T	G	3.418e^-5	0.398	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10219691	2R_10219691_SNP [dm3] 2R_14332186_SNP [dm6]	C	G	3.418e^-5	0.398	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10219694	2R_10219694_SNP [dm3] 2R_14332189_SNP [dm6]	T	A	3.418e^-5	0.398	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	4341461	3R_4341461_SNP [dm3] 3R_8515739_SNP [dm6]	C	T	3.477e^-5	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10889930	3R_10889930_SNP [dm3] 3R_15064208_SNP [dm6]	G	A	3.506e^-5	0.398	INTRON dpr9
2L	11878985	2L_11878985_SNP [dm3] 2L_11878985_SNP [dm6]	C	T	3.527e^-5	0.398	INTRON Pde1c	TF binding site mE1_TFBS_Trl
2L	15255070	2L_15255070_SNP [dm3] 2L_15255070_SNP [dm6]	A	G	3.538e^-5	0.398	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
3R	7741925	3R_7741925_SNP [dm3] 3R_11916203_SNP [dm6]	A	T	3.552e^-5	0.398	INTRON Cad87A
2R	16999892	2R_16999892_SNP [dm3] 2R_21112387_SNP [dm6]	C	T	3.554e^-5	0.398	INTRON ktub
3L	11226909	3L_11226909_INS [dm3] 3L_11233809_INS [dm6]	T	TT	3.614e^-5	0.398	INTRON Ir68a
3R	4884421	3R_4884421_SNP [dm3] 3R_9058699_SNP [dm6]	C	T	3.695e^-5	0.398	SYNONYMOUS_CODING Kdm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	8873937	3L_8873937_SNP [dm3] 3L_8880837_SNP [dm6]	T	A	3.739e^-5	0.398	INTRON dally
3L	10268685	3L_10268685_SNP [dm3] 3L_10275585_SNP [dm6]	A	G	3.842e^-5	0.398	DOWNSTREAM Or67d INTERGENIC
2L	15652157	2L_15652157_SNP [dm3] 2L_15652157_SNP [dm6]	A	T	3.863e^-5	0.398	INTRON CG4587
2R	17373804	2R_17373804_SNP [dm3] 2R_21486299_SNP [dm6]	G	T	3.888e^-5	0.398	DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17373808	2R_17373808_SNP [dm3] 2R_21486303_SNP [dm6]	A	C	3.888e^-5	0.398	DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10873198	2L_10873198_SNP [dm3] 2L_10873198_SNP [dm6]	C	T	3.901e^-5	0.398	DOWNSTREAM CR45454 INTERGENIC
2L	10873211	2L_10873211_SNP [dm3] 2L_10873211_SNP [dm6]	C	T	3.901e^-5	0.398	DOWNSTREAM CR45454 INTERGENIC
2L	10873297	2L_10873297_SNP [dm3] 2L_10873297_SNP [dm6]	G	T	3.901e^-5	0.398	DOWNSTREAM CR45454 INTERGENIC
2L	14209031	2L_14209031_SNP [dm3] 2L_14209031_SNP [dm6]	G	A	3.901e^-5	0.398	INTRON Dyrk2
2L	14209032	2L_14209032_SNP [dm3] 2L_14209032_SNP [dm6]	T	C	3.901e^-5	0.398	INTRON Dyrk2
2L	14209040	2L_14209040_SNP [dm3] 2L_14209040_SNP [dm6]	T	G	3.901e^-5	0.398	INTRON Dyrk2
2L	16836103	2L_16836103_SNP [dm3] 2L_16836103_SNP [dm6]	C	T	3.901e^-5	0.398	SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
2L	9051983	2L_9051983_SNP [dm3] 2L_9051983_SNP [dm6]	G	T	3.901e^-5	0.398	UTR_3_PRIME CG31708
2L	9052249	2L_9052249_SNP [dm3] 2L_9052249_SNP [dm6]	A	T	3.901e^-5	0.398	UTR_3_PRIME CG31708
2L	9052824	2L_9052824_SNP [dm3] 2L_9052824_SNP [dm6]	C	T	3.901e^-5	0.398	UTR_3_PRIME CG31708
2L	9052897	2L_9052897_SNP [dm3] 2L_9052897_SNP [dm6]	G	A	3.901e^-5	0.398	UTR_3_PRIME CG31708
2L	9061933	2L_9061933_SNP [dm3] 2L_9061933_SNP [dm6]	T	A	3.901e^-5	0.398	INTRON CG31708	TF binding site BDTNP1_TFBS_twi
2L	9061953	2L_9061953_SNP [dm3] 2L_9061953_SNP [dm6]	C	G	3.901e^-5	0.398	INTRON CG31708	TF binding site BDTNP1_TFBS_twi
3R	10892504	3R_10892504_SNP [dm3] 3R_15066782_SNP [dm6]	G	C	3.901e^-5	0.398	SYNONYMOUS_CODING dpr9
3R	16341489	3R_16341489_SNP [dm3] 3R_20515767_SNP [dm6]	A	G	3.901e^-5	0.398	INTERGENIC
3R	26115687	3R_26115687_SNP [dm3] 3R_30289965_SNP [dm6]	C	G	3.901e^-5	0.398	INTRON hdc
3R	26745469	3R_26745469_SNP [dm3] 3R_30919747_SNP [dm6]	C	G	3.901e^-5	0.398	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745470	3R_26745470_SNP [dm3] 3R_30919748_SNP [dm6]	A	C	3.901e^-5	0.398	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745498	3R_26745498_SNP [dm3] 3R_30919776_SNP [dm6]	A	G	3.901e^-5	0.398	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745903	3R_26745903_SNP [dm3] 3R_30920181_SNP [dm6]	A	G	3.901e^-5	0.398	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26772276	3R_26772276_SNP [dm3] 3R_30946554_SNP [dm6]	C	T	3.901e^-5	0.398	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	13822176	X_13822176_DEL [dm3] X_13928143_DEL [dm6]	TACTTTTGAC	T	3.901e^-5	0.398	INTRON mamo
X	13822222	X_13822222_SNP [dm3] X_13928189_SNP [dm6]	C	T	3.901e^-5	0.398	INTRON mamo
2R	17373820	2R_17373820_SNP [dm3] 2R_21486315_SNP [dm6]	T	C	3.947e^-5	0.398	DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21078598	X_21078598_SNP [dm3] X_21207571_SNP [dm6]	A	C	3.980e^-5	0.398	UTR_3_PRIME CG32521 DOWNSTREAM CG32521 INTRON CG32521	TF binding site mE1_TFBS_kn
X	20461094	X_20461094_INS [dm3] X_20590067_INS [dm6]	T	TCTATAAATCTGTTACTAT...	3.988e^-5	0.398	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	4.040e^-5	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14801187	X_14801187_SNP [dm3] X_14907154_SNP [dm6]	C	A	4.057e^-5	0.398	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
2R	16410127	2R_16410127_INS [dm3] 2R_20522622_INS [dm6]	C	CA	4.059e^-5	0.398	INTERGENIC
2R	16410131	2R_16410131_SNP [dm3] 2R_20522626_SNP [dm6]	G	T	4.059e^-5	0.398	INTERGENIC
2L	9517078	2L_9517078_INS [dm3] 2L_9517078_INS [dm6]	T	TA	4.174e^-5	0.398	INTRON CG33298
2L	6012560	2L_6012560_SNP [dm3] 2L_6012560_SNP [dm6]	A	T	4.203e^-5	0.398	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
3R	20114402	3R_20114402_SNP [dm3] 3R_24288680_SNP [dm6]	T	G	4.258e^-5	0.398	SYNONYMOUS_CODING CG34290 DOWNSTREAM CG6356
2R	18610059	2R_18610059_SNP [dm3] 2R_22722554_SNP [dm6]	A	G	4.276e^-5	0.398	DOWNSTREAM jbug INTRON jbug
3R	9970943	3R_9970943_SNP [dm3] 3R_14145221_SNP [dm6]	C	A	4.298e^-5	0.398	INTERGENIC
3R	2801814	3R_2801814_SNP [dm3] 3R_6976092_SNP [dm6]	A	G	4.321e^-5	0.398	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	2842568	3R_2842568_SNP [dm3] 3R_7016846_SNP [dm6]	A	T	4.329e^-5	0.398	INTERGENIC
3R	4923741	3R_4923741_SNP [dm3] 3R_9098019_SNP [dm6]	C	T	4.336e^-5	0.398	INTRON pum	TF binding site mE1_TFBS_cad
3R	4925223	3R_4925223_DEL [dm3] 3R_9099501_DEL [dm6]	AAATATGGTTTTAAACTCT...	A	4.336e^-5	0.398	INTRON pum
X	20692915	X_20692915_SNP [dm3] X_20821888_SNP [dm6]	C	T	4.336e^-5	0.398	UPSTREAM CG15450 INTRON shakB
2R	8511872	2R_8511872_SNP [dm3] 2R_12624367_SNP [dm6]	T	C	4.361e^-5	0.398	SYNONYMOUS_CODING CG30054
3R	6259016	3R_6259016_SNP [dm3] 3R_10433294_SNP [dm6]	G	C	4.399e^-5	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18377013	2R_18377013_SNP [dm3] 2R_22489508_SNP [dm6]	G	A	4.405e^-5	0.398	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18377019	2R_18377019_SNP [dm3] 2R_22489514_SNP [dm6]	G	A	4.405e^-5	0.398	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3798263	3L_3798263_SNP [dm3] 3L_3798263_SNP [dm6]	A	C	4.405e^-5	0.398	INTRON CG32264
3L	3798264	3L_3798264_SNP [dm3] 3L_3798264_SNP [dm6]	C	A	4.405e^-5	0.398	INTRON CG32264
2L	11878967	2L_11878967_SNP [dm3] 2L_11878967_SNP [dm6]	G	T	4.425e^-5	0.398	INTRON Pde1c	TF binding site mE1_TFBS_Trl
2L	13352209	2L_13352209_SNP [dm3] 2L_13352209_SNP [dm6]	C	G	4.444e^-5	0.398	NON_SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
2L	13352224	2L_13352224_SNP [dm3] 2L_13352224_SNP [dm6]	T	A	4.444e^-5	0.398	NON_SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
2L	13352346	2L_13352346_SNP [dm3] 2L_13352346_SNP [dm6]	G	A	4.444e^-5	0.398	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
3R	4937413	3R_4937413_SNP [dm3] 3R_9111691_SNP [dm6]	G	A	4.460e^-5	0.398	INTRON pum
3R	24861379	3R_24861379_SNP [dm3] 3R_29035657_SNP [dm6]	T	C	4.587e^-5	0.403	SYNONYMOUS_CODING Cpsf100	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6057441	3L_6057441_SNP [dm3] 3L_6064341_SNP [dm6]	A	C	4.591e^-5	0.403	INTERGENIC
3L	9818060	3L_9818060_SNP [dm3] 3L_9824960_SNP [dm6]	G	A	4.593e^-5	0.403	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2R	8496581	2R_8496581_SNP [dm3] 2R_12609076_SNP [dm6]	C	A	4.670e^-5	0.403	INTRON Amph
3R	6405008	3R_6405008_SNP [dm3] 3R_10579286_SNP [dm6]	G	T	4.730e^-5	0.403	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	8865702	3L_8865702_SNP [dm3] 3L_8872602_SNP [dm6]	T	C	4.747e^-5	0.403	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	15255037	2L_15255037_SNP [dm3] 2L_15255037_SNP [dm6]	G	A	4.803e^-5	0.403	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2R	4265646	2R_4265646_SNP [dm3] 2R_8378141_SNP [dm6]	A	G	4.822e^-5	0.403	INTRON pdm3
3R	19887882	3R_19887882_SNP [dm3] 3R_24062160_SNP [dm6]	C	T	4.842e^-5	0.403	SYNONYMOUS_CODING SMC1 DOWNSTREAM 4EHP
3L	20494901	3L_20494901_SNP [dm3] 3L_20501801_SNP [dm6]	C	T	4.853e^-5	0.403	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
2L	9179522	2L_9179522_SNP [dm3] 2L_9179522_SNP [dm6]	G	A	4.869e^-5	0.403	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20424433	2L_20424433_SNP [dm3] 2L_20424433_SNP [dm6]	G	C	4.883e^-5	0.403	SPLICE_SITE_REGION CG15130 INTRON CG15130	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20424453	2L_20424453_SNP [dm3] 2L_20424453_SNP [dm6]	T	G	4.883e^-5	0.403	INTRON CG15130	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16999967	2R_16999967_SNP [dm3] 2R_21112462_SNP [dm6]	G	A	4.883e^-5	0.403	INTRON ktub
X	16655491	X_16655491_SNP [dm3] X_16761458_SNP [dm6]	A	C	4.883e^-5	0.403	INTRON if
2R	16548852	2R_16548852_SNP [dm3] 2R_20661347_SNP [dm6]	A	G	4.947e^-5	0.403	UPSTREAM CG13437 DOWNSTREAM Lrt INTERGENIC	TF binding site mE1_TFBS_cad
2L	13589030	2L_13589030_SNP [dm3] 2L_13589030_SNP [dm6]	C	G	4.986e^-5	0.403	INTRON kuz
3R	16342005	3R_16342005_SNP [dm3] 3R_20516283_SNP [dm6]	G	A	4.986e^-5	0.403	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24902228	3R_24902228_SNP [dm3] 3R_29076506_SNP [dm6]	T	A	4.986e^-5	0.403	INTRON CG11873
3R	26777664	3R_26777664_SNP [dm3] 3R_30951942_SNP [dm6]	C	T	4.986e^-5	0.403	INTERGENIC
X	13822122	X_13822122_DEL [dm3] X_13928089_DEL [dm6]	ATTGCGTATAA...	A	4.986e^-5	0.403	INTRON mamo
2L	14171054	2L_14171054_SNP [dm3] 2L_14171054_SNP [dm6]	G	A	5.015e^-5	0.404	INTRON CG43333
3L	8873990	3L_8873990_SNP [dm3] 3L_8880890_SNP [dm6]	G	T	5.042e^-5	0.404	INTRON dally
2R	19774080	2R_19774080_SNP [dm3] 2R_23886557_SNP [dm6]	T	G	5.104e^-5	0.404	UPSTREAM CG5597 INTERGENIC
X	17923241	X_17923241_DEL [dm3] X_18029208_DEL [dm6]	AAAACGGAGGAAAGATGTGC...	A	5.122e^-5	0.404	DOWNSTREAM CG6867 INTRON Sh
2R	9826590	2R_9826590_SNP [dm3] 2R_13939085_SNP [dm6]	C	T	5.201e^-5	0.404	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14855062	2L_14855062_SNP [dm3] 2L_14855062_SNP [dm6]	G	A	5.207e^-5	0.404	INTERGENIC
2L	14047642	2L_14047642_SNP [dm3] 2L_14047642_SNP [dm6]	C	T	5.252e^-5	0.404	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20424469	2L_20424469_SNP [dm3] 2L_20424469_SNP [dm6]	A	T	5.289e^-5	0.404	INTRON CG15130	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11878901	2L_11878901_SNP [dm3] 2L_11878901_SNP [dm6]	T	G	5.308e^-5	0.404	INTRON Pde1c	TF binding site mE1_TFBS_Trl
2R	10174231	2R_10174231_SNP [dm3] 2R_14286726_SNP [dm6]	C	T	5.308e^-5	0.404	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	10174257	2R_10174257_SNP [dm3] 2R_14286752_SNP [dm6]	A	G	5.308e^-5	0.404	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	4912614	3R_4912614_SNP [dm3] 3R_9086892_SNP [dm6]	C	A	5.308e^-5	0.404	INTRON pum
2R	16529197	2R_16529197_SNP [dm3] 2R_20641692_SNP [dm6]	T	C	5.375e^-5	0.404	UPSTREAM CG11110 DOWNSTREAM CG33785 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3888935	2R_3888935_SNP [dm3] 2R_8001430_SNP [dm6]	G	A	5.396e^-5	0.404	SYNONYMOUS_CODING CG11191	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8440269	2R_8440269_SNP [dm3] 2R_12552764_SNP [dm6]	C	G	5.396e^-5	0.404	INTRON fra
3L	15691572	3L_15691572_SNP [dm3] 3L_15698472_SNP [dm6]	A	T	5.432e^-5	0.404	INTRON comm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	7811976	3R_7811976_SNP [dm3] 3R_11986254_SNP [dm6]	A	G	5.432e^-5	0.404	INTRON mfas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17454574	X_17454574_SNP [dm3] X_17560541_SNP [dm6]	G	T	5.440e^-5	0.404	INTRON CG43658
3R	24251932	3R_24251932_SNP [dm3] 3R_28426210_SNP [dm6]	T	C	5.441e^-5	0.404	INTRON beat-VI
X	19646492	X_19646492_SNP [dm3] X_19752459_SNP [dm6]	T	C	5.476e^-5	0.404	INTRON Pmp70	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	936748	2L_936748_SNP [dm3] 2L_936748_SNP [dm6]	G	A	5.542e^-5	0.404	INTRON CG4341
2L	7551326	2L_7551326_SNP [dm3] 2L_7551326_SNP [dm6]	T	C	5.551e^-5	0.404	INTRON RapGAP1
X	4846381	X_4846381_SNP [dm3] X_4952348_SNP [dm6]	C	T	5.575e^-5	0.404	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20522129	3L_20522129_SNP [dm3] 3L_20529029_SNP [dm6]	C	T	5.619e^-5	0.404	NON_SYNONYMOUS_CODING Rcd2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17454415	X_17454415_SNP [dm3] X_17560382_SNP [dm6]	A	G	5.629e^-5	0.404	INTRON CG43658
X	17454586	X_17454586_SNP [dm3] X_17560553_SNP [dm6]	C	T	5.629e^-5	0.404	INTRON CG43658
X	17454595	X_17454595_SNP [dm3] X_17560562_SNP [dm6]	G	T	5.629e^-5	0.404	INTRON CG43658
X	17454602	X_17454602_SNP [dm3] X_17560569_SNP [dm6]	C	T	5.629e^-5	0.404	INTRON CG43658
2R	16374416	2R_16374416_SNP [dm3] 2R_20486911_SNP [dm6]	A	T	5.630e^-5	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3496854	3R_3496854_DEL [dm3] 3R_7671132_DEL [dm6]	TGTGTTTACAT...	T	5.674e^-5	0.404	INTRON Nlg1
3R	9311078	3R_9311078_SNP [dm3] 3R_13485356_SNP [dm6]	A	G	5.674e^-5	0.404	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15383376	2L_15383376_SNP [dm3] 2L_15383376_SNP [dm6]	G	C	5.877e^-5	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14976673	2R_14976673_SNP [dm3] 2R_19089168_SNP [dm6]	A	C	5.879e^-5	0.414	INTRON 5-HT1A
3L	9640828	3L_9640828_SNP [dm3] 3L_9647728_SNP [dm6]	T	C	5.889e^-5	0.414	INTRON fry & 1 other
3R	20424686	3R_20424686_SNP [dm3] 3R_24598964_SNP [dm6]	T	G	5.896e^-5	0.414	INTRON mld
X	8905472	X_8905472_SNP [dm3] X_9011439_SNP [dm6]	T	A	5.997e^-5	0.419	INTRON rdgA & 1 other
3R	4883258	3R_4883258_SNP [dm3] 3R_9057536_SNP [dm6]	C	A	6.020e^-5	0.419	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	6.049e^-5	0.419	UTR_3_PRIME CG31708
4	449440	4_449440_INS [dm3] 4_428814_INS [dm6]	C	CC	6.093e^-5	0.419	INTRON CR44024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15707513	3R_15707513_SNP [dm3] 3R_19881791_SNP [dm6]	G	A	6.107e^-5	0.419	NON_SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7768555	2R_7768555_SNP [dm3] 2R_11881050_SNP [dm6]	A	T	6.111e^-5	0.419	SYNONYMOUS_CODING CG13185
2R	13961639	2R_13961639_SNP [dm3] 2R_18074134_SNP [dm6]	C	T	6.143e^-5	0.42	UPSTREAM CR45022 INTRON CG34386
3L	3719052	3L_3719052_SNP [dm3] 3L_3719052_SNP [dm6]	G	C	6.185e^-5	0.421	INTRON CG32264	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15246376	3R_15246376_SNP [dm3] 3R_19420654_SNP [dm6]	G	T	6.280e^-5	0.426	INTRON CG31221
2L	14340202	2L_14340202_SNP [dm3] 2L_14340202_SNP [dm6]	T	C	6.375e^-5	0.427	DOWNSTREAM CG15286 INTRON CG33090
2L	14340207	2L_14340207_SNP [dm3] 2L_14340207_SNP [dm6]	T	A	6.463e^-5	0.427	DOWNSTREAM CG15286 INTRON CG33090
2L	14340211	2L_14340211_SNP [dm3] 2L_14340211_SNP [dm6]	G	A	6.463e^-5	0.427	DOWNSTREAM CG15286 INTRON CG33090
3R	25578171	3R_25578171_SNP [dm3] 3R_29752449_SNP [dm6]	T	C	6.482e^-5	0.427	NON_SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad
3L	9874571	3L_9874571_SNP [dm3] 3L_9881471_SNP [dm6]	C	T	6.711e^-5	0.427	INTRON CG34382
2R	10174230	2R_10174230_SNP [dm3] 2R_14286725_SNP [dm6]	A	G	6.763e^-5	0.427	SYNONYMOUS_CODING Ih START_GAINED Ih UTR_5_PRIME Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	11869299	2R_11869299_SNP [dm3] 2R_15981794_SNP [dm6]	T	C	6.763e^-5	0.427	SYNONYMOUS_CODING Strn-Mlck
3L	20521232	3L_20521232_SNP [dm3] 3L_20528132_SNP [dm6]	T	C	6.807e^-5	0.427	UTR_3_PRIME Rcd2 DOWNSTREAM CG4858
2R	9826589	2R_9826589_SNP [dm3] 2R_13939084_SNP [dm6]	A	G	6.864e^-5	0.427	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25109466	3R_25109466_SNP [dm3] 3R_29283744_SNP [dm6]	C	G	6.879e^-5	0.427	INTERGENIC	regulatory region REDfly_CRMs
3R	8147113	3R_8147113_SNP [dm3] 3R_12321391_SNP [dm6]	G	A	6.915e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	8147154	3R_8147154_SNP [dm3] 3R_12321432_SNP [dm6]	C	T	6.915e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	7002225	3R_7002225_SNP [dm3] 3R_11176503_SNP [dm6]	A	C	6.918e^-5	0.427	SYNONYMOUS_CODING Ugt86Dh
2L	1533998	2L_1533998_SNP [dm3] 2L_1533998_SNP [dm6]	T	G	6.969e^-5	0.427	INTERGENIC
2R	4258169	2R_4258169_DEL [dm3] 2R_8370664_DEL [dm6]	TT	T	7.012e^-5	0.427	UPSTREAM CG2127 & 1 other INTRON pdm3	transposable element FlyBase
X	18912650	X_18912650_SNP [dm3] X_19018617_SNP [dm6]	A	G	7.017e^-5	0.427	INTRON CG43759
3R	19345346	3R_19345346_SNP [dm3] 3R_23519624_SNP [dm6]	G	A	7.098e^-5	0.427	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
2R	16022288	2R_16022288_SNP [dm3] 2R_20134783_SNP [dm6]	T	G	7.115e^-5	0.427	INTERGENIC
2L	6907095	2L_6907095_SNP [dm3] 2L_6907095_SNP [dm6]	C	T	7.118e^-5	0.427	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
3R	4822053	3R_4822053_SNP [dm3] 3R_8996331_SNP [dm6]	C	G	7.145e^-5	0.427	SYNONYMOUS_CODING CG31100
X	9274376	X_9274376_INS [dm3] X_9380343_INS [dm6]	A	AA	7.159e^-5	0.427	INTRON mgl
3L	20494826	3L_20494826_SNP [dm3] 3L_20501726_SNP [dm6]	G	T	7.215e^-5	0.427	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
2R	8590112	2R_8590112_SNP [dm3] 2R_12702607_SNP [dm6]	C	T	7.263e^-5	0.427	INTERGENIC
3L	13868386	3L_13868386_SNP [dm3] 3L_13875286_SNP [dm6]	C	T	7.377e^-5	0.427	INTRON dysc
X	12233690	X_12233690_SNP [dm3] X_12339657_SNP [dm6]	T	C	7.398e^-5	0.427	INTERGENIC
3L	10978612	3L_10978612_SNP [dm3] 3L_10985512_SNP [dm6]	C	T	7.401e^-5	0.427	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8178424	2L_8178424_SNP [dm3] 2L_8178424_SNP [dm6]	T	G	7.414e^-5	0.427	INTRON Piezo	TF binding site mE1_TFBS_chinmo
2R	9150716	2R_9150716_SNP [dm3] 2R_13263211_SNP [dm6]	C	T	7.424e^-5	0.427	INTRON CG42319
2R	5671491	2R_5671491_SNP [dm3] 2R_9783986_SNP [dm6]	C	A	7.428e^-5	0.427	INTRON CG1688
2R	13185220	2R_13185220_SNP [dm3] 2R_17297715_SNP [dm6]	C	A	7.496e^-5	0.427	INTRON mbl
3R	19817057	3R_19817057_SNP [dm3] 3R_23991335_SNP [dm6]	G	C	7.496e^-5	0.427	UPSTREAM CG13604 INTRON CG13604
3R	2827937	3R_2827937_SNP [dm3] 3R_7002215_SNP [dm6]	G	A	7.496e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_cad
X	19727256	X_19727256_SNP [dm3] X_19833223_SNP [dm6]	T	A	7.496e^-5	0.427	UTR_3_PRIME pico
3L	11645690	3L_11645690_SNP [dm3] 3L_11652590_SNP [dm6]	G	A	7.521e^-5	0.427	INTRON CG32085
2R	19391090	2R_19391090_SNP [dm3] 2R_23503567_SNP [dm6]	C	T	7.524e^-5	0.427	SYNONYMOUS_CODING CG13559
2R	13439124	2R_13439124_SNP [dm3] 2R_17551619_SNP [dm6]	G	T	7.545e^-5	0.427	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
3R	24252513	3R_24252513_SNP [dm3] 3R_28426791_SNP [dm6]	T	A	7.617e^-5	0.427	INTRON beat-VI
2L	10090505	2L_10090505_SNP [dm3] 2L_10090505_SNP [dm6]	C	T	7.619e^-5	0.427	DOWNSTREAM CG13133 INTRON CG44153
2L	10090520	2L_10090520_SNP [dm3] 2L_10090520_SNP [dm6]	T	C	7.619e^-5	0.427	DOWNSTREAM CG13133 INTRON CG44153
2L	10874452	2L_10874452_SNP [dm3] 2L_10874452_SNP [dm6]	A	T	7.619e^-5	0.427	INTERGENIC
2L	8334488	2L_8334488_SNP [dm3] 2L_8334488_SNP [dm6]	A	T	7.619e^-5	0.427	INTERGENIC
2R	10991562	2R_10991562_SNP [dm3] 2R_15104057_SNP [dm6]	T	A	7.619e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11442288	3L_11442288_SNP [dm3] 3L_11449188_SNP [dm6]	C	T	7.619e^-5	0.427	INTERGENIC
3L	2668979	3L_2668979_INS [dm3] 3L_2668979_INS [dm6]	G	GC	7.619e^-5	0.427	INTRON Fife
3L	3572015	3L_3572015_SNP [dm3] 3L_3572015_SNP [dm6]	G	T	7.619e^-5	0.427	INTRON Eip63E
3R	10059186	3R_10059186_SNP [dm3] 3R_14233464_SNP [dm6]	A	G	7.619e^-5	0.427	INTERGENIC
3R	23063572	3R_23063572_SNP [dm3] 3R_27237850_SNP [dm6]	A	T	7.619e^-5	0.427	SPLICE_SITE_REGION CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23063703	3R_23063703_DEL [dm3] 3R_27237981_DEL [dm6]	GG	G	7.619e^-5	0.427	UTR_5_PRIME CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23064425	3R_23064425_SNP [dm3] 3R_27238703_SNP [dm6]	T	A	7.619e^-5	0.427	SYNONYMOUS_CODING CG31064 UPSTREAM CG31064 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9710627	3R_9710627_SNP [dm3] 3R_13884905_SNP [dm6]	C	A	7.619e^-5	0.427	INTERGENIC
3R	9710628	3R_9710628_SNP [dm3] 3R_13884906_SNP [dm6]	T	C	7.619e^-5	0.427	INTERGENIC
3R	9970339	3R_9970339_SNP [dm3] 3R_14144617_SNP [dm6]	G	T	7.619e^-5	0.427	INTERGENIC
3R	9971153	3R_9971153_DEL [dm3] 3R_14145431_DEL [dm6]	TTG	C	7.619e^-5	0.427	INTERGENIC
3R	9975269	3R_9975269_SNP [dm3] 3R_14149547_SNP [dm6]	A	G	7.619e^-5	0.427	SYNONYMOUS_CODING CG14355
3R	9975893	3R_9975893_SNP [dm3] 3R_14150171_SNP [dm6]	G	A	7.619e^-5	0.427	SYNONYMOUS_CODING CG14355	TF binding site mE1_TFBS_cad
X	14766567	X_14766567_SNP [dm3] X_14872534_SNP [dm6]	A	G	7.619e^-5	0.427	INTRON Flo2
X	7012902	X_7012902_SNP [dm3] X_7118869_SNP [dm6]	T	G	7.619e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10509698	2L_10509698_SNP [dm3] 2L_10509698_SNP [dm6]	T	G	7.687e^-5	0.429	DOWNSTREAM Fatp & 1 other INTRON CG7384	TF binding site mE1_TFBS_cad
2L	7819262	2L_7819262_SNP [dm3] 2L_7819262_SNP [dm6]	T	C	7.693e^-5	0.429	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17873569	2R_17873569_SNP [dm3] 2R_21986064_SNP [dm6]	G	A	7.728e^-5	0.429	SYNONYMOUS_CODING CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14976410	2R_14976410_SNP [dm3] 2R_19088905_SNP [dm6]	C	A	7.781e^-5	0.431	INTRON 5-HT1A
3R	13377441	3R_13377441_SNP [dm3] 3R_17551719_SNP [dm6]	C	T	7.797e^-5	0.431	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11911547	X_11911547_SNP [dm3] X_12017514_SNP [dm6]	G	C	7.887e^-5	0.431	NON_SYNONYMOUS_CODING Chrac-16 DOWNSTREAM regucalcin	TF binding site mE1_TFBS_HSA
3L	8943704	3L_8943704_DEL [dm3] 3L_8950604_DEL [dm6]	AGAAATTCCCTATCTATTCA...	A	7.887e^-5	0.431	INTRON orb2 & 1 other
3R	15246457	3R_15246457_SNP [dm3] 3R_19420735_SNP [dm6]	C	T	7.913e^-5	0.431	INTRON CG31221
2L	2521455	2L_2521455_INS [dm3] 2L_2521455_INS [dm6]	T	TTTAA	7.914e^-5	0.431	INTERGENIC
2L	2521459	2L_2521459_INS [dm3] 2L_2521459_INS [dm6]	G	AACCATTATATCTGT...	7.914e^-5	0.431	INTERGENIC
2R	4262958	2R_4262958_SNP [dm3] 2R_8375453_SNP [dm6]	G	A	8.017e^-5	0.435	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19028835	2R_19028835_SNP [dm3] 2R_23141312_SNP [dm6]	C	T	8.066e^-5	0.436	UPSTREAM CG13544 & 1 other INTERGENIC
3L	1022527	3L_1022527_INS [dm3] 3L_1022527_INS [dm6]	T	TT	8.107e^-5	0.437	INTRON trio
3R	26745597	3R_26745597_SNP [dm3] 3R_30919875_SNP [dm6]	G	T	8.162e^-5	0.437	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16338748	3R_16338748_SNP [dm3] 3R_20513026_SNP [dm6]	T	C	8.172e^-5	0.437	UPSTREAM CG4288 INTERGENIC
2L	9416110	2L_9416110_SNP [dm3] 2L_9416110_SNP [dm6]	A	T	8.224e^-5	0.437	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18479337	2R_18479337_SNP [dm3] 2R_22591832_SNP [dm6]	C	T	8.228e^-5	0.437	INTRON dnr1	TF binding site mE1_TFBS_sens
X	20045736	X_20045736_SNP [dm3] X_20151703_SNP [dm6]	A	G	8.228e^-5	0.437	INTRON CG9572
3R	25846749	3R_25846749_DEL [dm3] 3R_30021027_DEL [dm6]	TGACCCGGTCCCTTTATTAA...	T	8.244e^-5	0.437	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	8772827	3R_8772827_SNP [dm3] 3R_12947105_SNP [dm6]	C	G	8.404e^-5	0.442	INTERGENIC
2R	18692330	2R_18692330_SNP [dm3] 2R_22804825_SNP [dm6]	T	C	8.422e^-5	0.442	SYNONYMOUS_CODING CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12402257	X_12402257_SNP [dm3] X_12508224_SNP [dm6]	A	G	8.423e^-5	0.442	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3R	24253746	3R_24253746_SNP [dm3] 3R_28428024_SNP [dm6]	A	C	8.438e^-5	0.442	INTRON beat-VI
3R	25052715	3R_25052715_SNP [dm3] 3R_29226993_SNP [dm6]	C	T	8.567e^-5	0.447	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16996639	2R_16996639_SNP [dm3] 2R_21109134_SNP [dm6]	G	A	8.572e^-5	0.447	INTRON ktub
X	20045357	X_20045357_SNP [dm3] X_20151324_SNP [dm6]	A	C	8.702e^-5	0.451	INTRON CG9572
2L	6841324	2L_6841324_SNP [dm3] 2L_6841324_SNP [dm6]	T	C	8.710e^-5	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	19689477	3R_19689477_SNP [dm3] 3R_23863755_SNP [dm6]	G	T	8.746e^-5	0.452	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3R	8843013	3R_8843013_SNP [dm3] 3R_13017291_SNP [dm6]	G	A	8.830e^-5	0.455	UTR_5_PRIME CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24253747	3R_24253747_SNP [dm3] 3R_28428025_SNP [dm6]	A	C	8.886e^-5	0.457	INTRON beat-VI
2R	5676782	2R_5676782_SNP [dm3] 2R_9789277_SNP [dm6]	A	T	9.000e^-5	0.461	DOWNSTREAM CR44208 INTRON CG1688 EXON CR44208
3R	21212079	3R_21212079_SNP [dm3] 3R_25386357_SNP [dm6]	C	A	9.093e^-5	0.465	INTRON Fur1
3L	21219532	3L_21219532_SNP [dm3] 3L_21226432_SNP [dm6]	G	A	9.144e^-5	0.465	UPSTREAM Eip78C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21220449	3L_21220449_SNP [dm3] 3L_21227349_SNP [dm6]	C	A	9.144e^-5	0.465	UTR_5_PRIME Eip78C
3R	25068857	3R_25068857_SNP [dm3] 3R_29243135_SNP [dm6]	G	A	9.221e^-5	0.467	INTRON CG31445
3R	26851597	3R_26851597_SNP [dm3] 3R_31025875_SNP [dm6]	T	G	9.232e^-5	0.467	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9459493	2R_9459493_SNP [dm3] 2R_13571988_SNP [dm6]	C	T	9.288e^-5	0.468	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21476463	3R_21476463_SNP [dm3] 3R_25650741_SNP [dm6]	A	G	9.338e^-5	0.468	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21476475	3R_21476475_SNP [dm3] 3R_25650753_SNP [dm6]	A	G	9.338e^-5	0.468	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
4	490332	4_490332_SNP [dm3] 4_469706_SNP [dm6]	T	A	9.370e^-5	0.468	UTR_3_PRIME Asator INTRON pncr013:4
X	10864332	X_10864332_SNP [dm3] X_10970299_SNP [dm6]	C	T	9.382e^-5	0.468	INTRON CG42339
3R	2802061	3R_2802061_SNP [dm3] 3R_6976339_SNP [dm6]	T	C	9.454e^-5	0.47	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	20517990	3L_20517990_SNP [dm3] 3L_20524890_SNP [dm6]	C	A	9.503e^-5	0.471	INTRON CG4825
3R	2443061	3R_2443061_SNP [dm3] 3R_6617339_SNP [dm6]	T	C	9.547e^-5	0.472	INTERGENIC
X	19578013	X_19578013_SNP [dm3] X_19683980_SNP [dm6]	C	T	9.602e^-5	0.474	UTR_5_PRIME Ubqn UPSTREAM dome	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8483695	3R_8483695_SNP [dm3] 3R_12657973_SNP [dm6]	T	G	9.636e^-5	0.474	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	23068167	3R_23068167_SNP [dm3] 3R_27242445_SNP [dm6]	A	T	9.674e^-5	0.475	UTR_3_PRIME CG18766 DOWNSTREAM CG17991
3L	3719950	3L_3719950_SNP [dm3] 3L_3719950_SNP [dm6]	A	G	9.719e^-5	0.476	INTRON CG32264
2R	14676216	2R_14676216_SNP [dm3] 2R_18788711_SNP [dm6]	G	T	9.793e^-5	0.476	INTRON CG15080
3R	4927311	3R_4927311_SNP [dm3] 3R_9101589_SNP [dm6]	C	T	9.799e^-5	0.476	INTRON pum
X	9947217	X_9947217_SNP [dm3] X_10053184_SNP [dm6]	G	T	9.857e^-5	0.476	UPSTREAM Yp2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	9947228	X_9947228_SNP [dm3] X_10053195_SNP [dm6]	G	A	9.857e^-5	0.476	UPSTREAM Yp2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	9947252	X_9947252_SNP [dm3] X_10053219_SNP [dm6]	A	C	9.857e^-5	0.476	UPSTREAM Yp2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	20497997	3L_20497997_SNP [dm3] 3L_20504897_SNP [dm6]	G	A	9.880e^-5	0.476	NON_SYNONYMOUS_CODING CG17637 INTRON CG32425	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13824573	3L_13824573_SNP [dm3] 3L_13831473_SNP [dm6]	A	G	9.936e^-5	0.476	INTERGENIC
3L	9200980	3L_9200980_SNP [dm3] 3L_9207880_SNP [dm6]	T	G	9.963e^-5	0.476	SPLICE_SITE_REGION Slc45-1 UTR_5_PRIME Slc45-1 INTRON Slc45-1
3L	7054733	3L_7054733_SNP [dm3] 3L_7061633_SNP [dm6]	T	C	9.991e^-5	0.476	INTRON CG8641
X	8221129	X_8221129_SNP [dm3] X_8327096_SNP [dm6]	C	A	9.996e^-5	0.476	INTRON nAChRalpha3
2R	5692860	2R_5692860_SNP [dm3] 2R_9805355_SNP [dm6]	T	G	1.002e^-4	0.476	INTRON CG1688
3L	13860281	3L_13860281_SNP [dm3] 3L_13867181_SNP [dm6]	A	C	1.013e^-4	0.48	UPSTREAM CG8745 DOWNSTREAM dysc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12617448	X_12617448_DEL [dm3] X_12723415_DEL [dm6]	AAA	A	1.016e^-4	0.48	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18952350	3R_18952350_SNP [dm3] 3R_23126628_SNP [dm6]	G	A	1.017e^-4	0.48	UTR_3_PRIME CG31457 UPSTREAM CG31365	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	8334362	2L_8334362_SNP [dm3] 2L_8334362_SNP [dm6]	C	T	1.024e^-4	0.482	INTERGENIC
3R	23009660	3R_23009660_SNP [dm3] 3R_27183938_SNP [dm6]	G	A	1.040e^-4	0.488	INTRON Ser
3R	23063753	3R_23063753_SNP [dm3] 3R_27238031_SNP [dm6]	T	G	1.048e^-4	0.49	UTR_5_PRIME CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3006448	3L_3006448_SNP [dm3] 3L_3006448_SNP [dm6]	C	A	1.062e^-4	0.495	INTRON FMRFaR
2L	9416109	2L_9416109_SNP [dm3] 2L_9416109_SNP [dm6]	G	A	1.065e^-4	0.495	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2999513	3L_2999513_SNP [dm3] 3L_2999513_SNP [dm6]	A	G	1.068e^-4	0.495	INTERGENIC
2L	11312580	2L_11312580_INS [dm3] 2L_11312580_INS [dm6]	T	TGTACAT	1.068e^-4	0.495	INTERGENIC
X	9947298	X_9947298_SNP [dm3] X_10053265_SNP [dm6]	A	C	1.076e^-4	0.497	UPSTREAM Yp2 & 1 other DOWNSTREAM CR45601 INTERGENIC	regulatory region REDfly_CRMs
3R	25360294	3R_25360294_SNP [dm3] 3R_29534572_SNP [dm6]	A	C	1.078e^-4	0.497	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19888158	3R_19888158_SNP [dm3] 3R_24062436_SNP [dm6]	G	T	1.085e^-4	0.499	SYNONYMOUS_CODING SMC1 DOWNSTREAM 4EHP
3L	3720458	3L_3720458_SNP [dm3] 3L_3720458_SNP [dm6]	G	T	1.099e^-4	0.5	INTRON CG32264
3R	13376598	3R_13376598_SNP [dm3] 3R_17550876_SNP [dm6]	C	T	1.100e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2436879	3R_2436879_SNP [dm3] 3R_6611157_SNP [dm6]	A	T	1.103e^-4	0.5	INTERGENIC
3L	8874238	3L_8874238_SNP [dm3] 3L_8881138_SNP [dm6]	C	T	1.112e^-4	0.5	INTRON dally
X	9947291	X_9947291_SNP [dm3] X_10053258_SNP [dm6]	C	T	1.112e^-4	0.5	UPSTREAM Yp2 & 1 other DOWNSTREAM CR45601 INTERGENIC	regulatory region REDfly_CRMs
3R	14056879	3R_14056879_SNP [dm3] 3R_18231157_SNP [dm6]	G	A	1.116e^-4	0.5	INTERGENIC
3R	14056882	3R_14056882_SNP [dm3] 3R_18231160_SNP [dm6]	T	C	1.116e^-4	0.5	INTERGENIC
3R	2586083	3R_2586083_SNP [dm3] 3R_6760361_SNP [dm6]	C	T	1.116e^-4	0.5	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	26990614	3R_26990614_SNP [dm3] 3R_31164892_SNP [dm6]	T	C	1.122e^-4	0.5	INTRON Gycbeta100B & 1 other
3R	2826070	3R_2826070_SNP [dm3] 3R_7000348_SNP [dm6]	A	T	1.130e^-4	0.5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2436995	3R_2436995_SNP [dm3] 3R_6611273_SNP [dm6]	C	A	1.132e^-4	0.5	INTERGENIC
3L	10283074	3L_10283074_SNP [dm3] 3L_10289974_SNP [dm6]	A	T	1.133e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7100562	3R_7100562_DEL [dm3] 3R_11274840_DEL [dm6]	TT	T	1.134e^-4	0.5	INTRON CR31386
2L	9069679	2L_9069679_DEL [dm3] 2L_9069679_DEL [dm6]	GTTGT	A	1.135e^-4	0.5	INTRON CG31708
2L	1354479	2L_1354479_SNP [dm3] 2L_1354479_SNP [dm6]	G	A	1.135e^-4	0.5	NON_SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
X	16598394	X_16598394_SNP [dm3] X_16704361_SNP [dm6]	G	T	1.136e^-4	0.5	UPSTREAM CG9673 INTRON CG4678 & 1 other
3R	14536372	3R_14536372_SNP [dm3] 3R_18710650_SNP [dm6]	A	G	1.139e^-4	0.5	INTRON VAChT & 1 other
3L	19316292	3L_19316292_DEL [dm3] 3L_19323192_DEL [dm6]	AA	A	1.142e^-4	0.5	INTRON pip
3R	7853829	3R_7853829_SNP [dm3] 3R_12028107_SNP [dm6]	T	G	1.142e^-4	0.5	UTR_3_PRIME CG42505 & 2 others INTRON CG31358
2R	10329692	2R_10329692_SNP [dm3] 2R_14442187_SNP [dm6]	G	A	1.144e^-4	0.5	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	8117875	3R_8117875_SNP [dm3] 3R_12292153_SNP [dm6]	C	A	1.146e^-4	0.5	INTRON svp
3R	8125318	3R_8125318_SNP [dm3] 3R_12299596_SNP [dm6]	T	G	1.146e^-4	0.5	INTRON svp	TF binding site mE1_TFBS_cad
2R	12093345	2R_12093345_SNP [dm3] 2R_16205840_SNP [dm6]	G	A	1.157e^-4	0.502	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
2R	12093356	2R_12093356_SNP [dm3] 2R_16205851_SNP [dm6]	T	A	1.157e^-4	0.502	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
2L	11878898	2L_11878898_SNP [dm3] 2L_11878898_SNP [dm6]	C	T	1.172e^-4	0.506	INTRON Pde1c	TF binding site mE1_TFBS_Trl
2L	11878900	2L_11878900_SNP [dm3] 2L_11878900_SNP [dm6]	C	T	1.172e^-4	0.506	INTRON Pde1c	TF binding site mE1_TFBS_Trl
2L	19941853	2L_19941853_SNP [dm3] 2L_19941853_SNP [dm6]	T	C	1.186e^-4	0.51	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1031335	3L_1031335_SNP [dm3] 3L_1031335_SNP [dm6]	G	A	1.188e^-4	0.51	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1031351	3L_1031351_INS [dm3] 3L_1031351_INS [dm6]	G	GT	1.188e^-4	0.51	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14173417	3L_14173417_SNP [dm3] 3L_14180317_SNP [dm6]	C	T	1.192e^-4	0.51	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2813468	3L_2813468_SNP [dm3] 3L_2813468_SNP [dm6]	A	G	1.197e^-4	0.51	INTRON CG43444
3L	2813512	3L_2813512_SNP [dm3] 3L_2813512_SNP [dm6]	G	A	1.197e^-4	0.51	INTRON CG43444
2R	12076022	2R_12076022_SNP [dm3] 2R_16188517_SNP [dm6]	G	T	1.199e^-4	0.51	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	4957641	X_4957641_SNP [dm3] X_5063608_SNP [dm6]	A	T	1.205e^-4	0.51	UPSTREAM ovo INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3R	17885299	3R_17885299_SNP [dm3] 3R_22059577_SNP [dm6]	C	G	1.207e^-4	0.51	INTRON how
3L	2822158	3L_2822158_DEL [dm3] 3L_2822158_DEL [dm6]	AGTTTGA	A	1.210e^-4	0.51	INTRON CG43444
3L	20494874	3L_20494874_SNP [dm3] 3L_20501774_SNP [dm6]	A	G	1.218e^-4	0.51	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
2L	1354496	2L_1354496_SNP [dm3] 2L_1354496_SNP [dm6]	C	T	1.220e^-4	0.51	SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	1.224e^-4	0.51	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	7040010	2L_7040010_SNP [dm3] 2L_7040010_SNP [dm6]	T	A	1.224e^-4	0.51	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3014246	3L_3014246_SNP [dm3] 3L_3014246_SNP [dm6]	T	A	1.226e^-4	0.51	DOWNSTREAM CG32488 INTERGENIC
3L	3014260	3L_3014260_SNP [dm3] 3L_3014260_SNP [dm6]	G	A	1.226e^-4	0.51	DOWNSTREAM CG32488 INTERGENIC
2L	19192851	2L_19192851_SNP [dm3] 2L_19192851_SNP [dm6]	T	G	1.229e^-4	0.51	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21933730	3L_21933730_SNP [dm3] 3L_21940630_SNP [dm6]	C	T	1.231e^-4	0.51	NON_SYNONYMOUS_CODING DNApol-eta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21863279	2L_21863279_SNP [dm3] 2L_21863279_SNP [dm6]	T	A	1.233e^-4	0.51	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3869011	2L_3869011_SNP [dm3] 2L_3869011_SNP [dm6]	G	C	1.240e^-4	0.512	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
X	4105675	X_4105675_INS [dm3] X_4211642_INS [dm6]	T	TTCATCGAAAAATTAATTTG...	1.250e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13130327	3L_13130327_SNP [dm3] 3L_13137227_SNP [dm6]	C	A	1.273e^-4	0.522	DOWNSTREAM CG33262 INTERGENIC
3R	23422196	3R_23422196_SNP [dm3] 3R_27596474_SNP [dm6]	T	G	1.273e^-4	0.522	UPSTREAM CG5639 INTERGENIC
3R	13961647	3R_13961647_SNP [dm3] 3R_18135925_SNP [dm6]	G	A	1.281e^-4	0.522	DOWNSTREAM sr INTERGENIC
X	14801185	X_14801185_SNP [dm3] X_14907152_SNP [dm6]	A	T	1.285e^-4	0.522	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
X	20045382	X_20045382_SNP [dm3] X_20151349_SNP [dm6]	T	G	1.285e^-4	0.522	INTRON CG9572
4	442235	4_442235_SNP [dm3] 4_421609_SNP [dm6]	A	G	1.307e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11824912	3R_11824912_SNP [dm3] 3R_15999190_SNP [dm6]	G	T	1.309e^-4	0.522	INTRON srp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18843640	3R_18843640_SNP [dm3] 3R_23017918_SNP [dm6]	C	A	1.316e^-4	0.522	INTERGENIC	TF binding site mE1_TFBS_inv
X	12198482	X_12198482_SNP [dm3] X_12304449_SNP [dm6]	G	A	1.316e^-4	0.522	INTRON Ten-a
3L	9818141	3L_9818141_SNP [dm3] 3L_9825041_SNP [dm6]	G	A	1.319e^-4	0.522	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2R	17368966	2R_17368966_SNP [dm3] 2R_21481461_SNP [dm6]	A	T	1.320e^-4	0.522	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8873672	3L_8873672_SNP [dm3] 3L_8880572_SNP [dm6]	T	C	1.322e^-4	0.522	INTRON dally
2R	9913436	2R_9913436_SNP [dm3] 2R_14025931_SNP [dm6]	T	C	1.325e^-4	0.522	INTRON mam	TF binding site mE1_TFBS_Trl
3L	2644584	3L_2644584_SNP [dm3] 3L_2644584_SNP [dm6]	G	T	1.332e^-4	0.522	UPSTREAM CG1143 INTERGENIC
2L	9047001	2L_9047001_SNP [dm3] 2L_9047001_SNP [dm6]	G	C	1.333e^-4	0.522	INTERGENIC
3L	9839158	3L_9839158_SNP [dm3] 3L_9846058_SNP [dm6]	A	G	1.342e^-4	0.522	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
2L	12029491	2L_12029491_INS [dm3] 2L_12029491_INS [dm6]	A	AATA	1.344e^-4	0.522	INTRON dmGlut	TF binding site mE1_TFBS_cad
3L	6461837	3L_6461837_SNP [dm3] 3L_6468737_SNP [dm6]	G	A	1.346e^-4	0.522	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	11399398	2L_11399398_SNP [dm3] 2L_11399398_SNP [dm6]	G	A	1.348e^-4	0.522	INTERGENIC	regulatory region REDfly_CRMs
3L	16243660	3L_16243660_SNP [dm3] 3L_16250560_SNP [dm6]	G	A	1.350e^-4	0.522	UTR_3_PRIME CG13055 DOWNSTREAM CG13055
3R	8846177	3R_8846177_SNP [dm3] 3R_13020455_SNP [dm6]	G	C	1.352e^-4	0.522	INTRON CtBP
2R	6894387	2R_6894387_DEL [dm3] 2R_11006882_DEL [dm6]	CGATAGC	C	1.353e^-4	0.522	INTRON luna
2L	10314433	2L_10314433_SNP [dm3] 2L_10314433_SNP [dm6]	T	A	1.353e^-4	0.522	UPSTREAM CG4972 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11139514	2L_11139514_SNP [dm3] 2L_11139514_SNP [dm6]	T	C	1.353e^-4	0.522	SYNONYMOUS_CODING Gyc32E DOWNSTREAM hgo
3L	9761027	3L_9761027_SNP [dm3] 3L_9767927_SNP [dm6]	T	C	1.353e^-4	0.522	INTRON CG8177
4	486790	4_486790_SNP [dm3] 4_466164_SNP [dm6]	C	G	1.353e^-4	0.522	INTRON bip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	490113	4_490113_SNP [dm3] 4_469487_SNP [dm6]	A	G	1.353e^-4	0.522	UTR_3_PRIME Asator DOWNSTREAM pncr013:4 INTRON pncr013:4	TF binding site BDTNP1_TFBS_dl
4	499881	4_499881_SNP [dm3] 4_479255_SNP [dm6]	C	T	1.353e^-4	0.522	INTRON Asator
4	502158	4_502158_SNP [dm3] 4_481532_SNP [dm6]	G	T	1.353e^-4	0.522	NON_SYNONYMOUS_CODING Asator UTR_5_PRIME Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	506389	4_506389_SNP [dm3] 4_485763_SNP [dm6]	T	A	1.353e^-4	0.522	UTR_5_PRIME Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl
2L	1243076	2L_1243076_SNP [dm3] 2L_1243076_SNP [dm6]	G	A	1.355e^-4	0.522	DOWNSTREAM CG5397 INTERGENIC
3R	7138798	3R_7138798_SNP [dm3] 3R_11313076_SNP [dm6]	G	A	1.380e^-4	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19633324	2R_19633324_SNP [dm3] 2R_23745801_SNP [dm6]	C	T	1.380e^-4	0.529	UPSTREAM egl INTRON egl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_zfh1
3R	23417879	3R_23417879_SNP [dm3] 3R_27592157_SNP [dm6]	G	A	1.389e^-4	0.532	INTRON CG5639
2R	5666429	2R_5666429_SNP [dm3] 2R_9778924_SNP [dm6]	C	G	1.400e^-4	0.535	INTRON CG1688	TF binding site mE1_TFBS_chinmo
2R	11770619	2R_11770619_SNP [dm3] 2R_15883114_SNP [dm6]	A	G	1.404e^-4	0.535	INTRON sli
3R	2637958	3R_2637958_SNP [dm3] 3R_6812236_SNP [dm6]	A	G	1.412e^-4	0.537	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7823221	2L_7823221_SNP [dm3] 2L_7823221_SNP [dm6]	G	C	1.418e^-4	0.538	INTRON CG7115
3R	8113621	3R_8113621_SNP [dm3] 3R_12287899_SNP [dm6]	C	G	1.425e^-4	0.54	INTRON svp
3R	4886284	3R_4886284_SNP [dm3] 3R_9060562_SNP [dm6]	T	C	1.427e^-4	0.54	INTRON Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13136571	X_13136571_SNP [dm3] X_13242538_SNP [dm6]	T	A	1.433e^-4	0.541	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	23303925	3R_23303925_SNP [dm3] 3R_27478203_SNP [dm6]	G	C	1.437e^-4	0.541	UPSTREAM Cyp6a18 INTERGENIC
3L	6961663	3L_6961663_SNP [dm3] 3L_6968563_SNP [dm6]	T	C	1.453e^-4	0.544	SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
3L	6961726	3L_6961726_SNP [dm3] 3L_6968626_SNP [dm6]	G	A	1.453e^-4	0.544	SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
3L	6966551	3L_6966551_SNP [dm3] 3L_6973451_SNP [dm6]	T	G	1.453e^-4	0.544	SYNONYMOUS_CODING Galphai UPSTREAM CG10063
X	13136646	X_13136646_SNP [dm3] X_13242613_SNP [dm6]	A	G	1.470e^-4	0.549	INTRON mew	TF binding site BDTNP1_TFBS_da
2L	10462887	2L_10462887_SNP [dm3] 2L_10462887_SNP [dm6]	G	A	1.476e^-4	0.55	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2R	1138577	2R_1138577_SNP [dm3] 2R_5251072_SNP [dm6]	A	T	1.487e^-4	0.552	UPSTREAM Nipped-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13158250	2R_13158250_SNP [dm3] 2R_17270745_SNP [dm6]	C	T	1.488e^-4	0.552	INTRON mbl
3R	14050388	3R_14050388_SNP [dm3] 3R_18224666_SNP [dm6]	C	T	1.489e^-4	0.552	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5677778	2R_5677778_SNP [dm3] 2R_9790273_SNP [dm6]	A	G	1.501e^-4	0.554	INTRON CG1688 EXON CR44208	TF binding site mE1_TFBS_HSA
2R	12076193	2R_12076193_SNP [dm3] 2R_16188688_SNP [dm6]	A	G	1.502e^-4	0.554	NON_SYNONYMOUS_CODING clu START_GAINED clu UTR_5_PRIME clu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27501037	3R_27501037_SNP [dm3] 3R_31675315_SNP [dm6]	G	A	1.506e^-4	0.555	SYNONYMOUS_CODING CG1815	TF binding site mE1_TFBS_sens
3R	26851567	3R_26851567_SNP [dm3] 3R_31025845_SNP [dm6]	A	G	1.513e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4100743	X_4100743_SNP [dm3] X_4206710_SNP [dm6]	G	C	1.524e^-4	0.558	UPSTREAM Fas2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9874565	3L_9874565_SNP [dm3] 3L_9881465_SNP [dm6]	T	G	1.525e^-4	0.558	INTRON CG34382
3R	9782518	3R_9782518_SNP [dm3] 3R_13956796_SNP [dm6]	G	C	1.538e^-4	0.561	INTERGENIC
3L	11658887	3L_11658887_SNP [dm3] 3L_11665787_SNP [dm6]	G	A	1.539e^-4	0.561	INTRON CG32085
3L	867489	3L_867489_SNP [dm3] 3L_867489_SNP [dm6]	C	T	1.548e^-4	0.563	INTRON CG12502
3L	21989256	3L_21989256_SNP [dm3] 3L_21996156_SNP [dm6]	T	G	1.550e^-4	0.563	INTERGENIC
2L	13641974	2L_13641974_SNP [dm3] 2L_13641974_SNP [dm6]	T	G	1.553e^-4	0.563	UPSTREAM ics & 1 other INTRON ics	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15708663	3L_15708663_SNP [dm3] 3L_15715563_SNP [dm6]	A	G	1.560e^-4	0.563	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14351240	2L_14351240_SNP [dm3] 2L_14351240_SNP [dm6]	A	G	1.564e^-4	0.563	UPSTREAM CG43052 INTRON l_2_34Fc
2L	19192850	2L_19192850_SNP [dm3] 2L_19192850_SNP [dm6]	T	G	1.566e^-4	0.563	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11308333	3R_11308333_SNP [dm3] 3R_15482611_SNP [dm6]	C	T	1.568e^-4	0.563	NON_SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	17730616	3R_17730616_SNP [dm3] 3R_21904894_SNP [dm6]	A	T	1.569e^-4	0.563	INTRON CG6678
2R	19113986	2R_19113986_SNP [dm3] 2R_23226463_SNP [dm6]	C	A	1.572e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9683689	2R_9683689_DEL [dm3] 2R_13796184_DEL [dm6]	TT	T	1.580e^-4	0.563	INTRON Cpr50Cb
2R	15191894	2R_15191894_SNP [dm3] 2R_19304389_SNP [dm6]	C	A	1.581e^-4	0.563	UTR_3_PRIME Tab2 UPSTREAM CG7461 DOWNSTREAM Tab2
2R	10219556	2R_10219556_SNP [dm3] 2R_14332051_SNP [dm6]	A	C	1.583e^-4	0.563	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	16837610	2L_16837610_SNP [dm3] 2L_16837610_SNP [dm6]	C	A	1.585e^-4	0.563	UPSTREAM SclB & 2 others INTERGENIC
2R	9136726	2R_9136726_SNP [dm3] 2R_13249221_SNP [dm6]	T	G	1.590e^-4	0.563	NON_SYNONYMOUS_CODING CG4712 DOWNSTREAM Mp20
2L	3200674	2L_3200674_SNP [dm3] 2L_3200674_SNP [dm6]	T	C	1.591e^-4	0.563	UPSTREAM CG34393 INTERGENIC
2L	6624119	2L_6624119_SNP [dm3] 2L_6624119_SNP [dm6]	T	C	1.593e^-4	0.563	INTRON CG34345
2L	9857030	2L_9857030_SNP [dm3] 2L_9857030_SNP [dm6]	G	A	1.605e^-4	0.566	INTRON nAChRalpha6
3L	7023103	3L_7023103_SNP [dm3] 3L_7030003_SNP [dm6]	C	G	1.609e^-4	0.567	INTRON Mp
3R	27470992	3R_27470992_SNP [dm3] 3R_31645270_SNP [dm6]	C	T	1.615e^-4	0.567	INTRON kek6
3L	9818108	3L_9818108_SNP [dm3] 3L_9825008_SNP [dm6]	C	G	1.618e^-4	0.567	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2L	14000372	2L_14000372_SNP [dm3] 2L_14000372_SNP [dm6]	C	T	1.619e^-4	0.567	INTRON rk
2R	17409707	2R_17409707_SNP [dm3] 2R_21522202_SNP [dm6]	A	T	1.627e^-4	0.568	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	6258804	3R_6258804_SNP [dm3] 3R_10433082_SNP [dm6]	A	C	1.630e^-4	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18111836	3R_18111836_SNP [dm3] 3R_22286114_SNP [dm6]	T	A	1.634e^-4	0.568	INTRON SKIP
3R	9304189	3R_9304189_SNP [dm3] 3R_13478467_SNP [dm6]	T	C	1.637e^-4	0.568	EXON CR45589
3L	10283001	3L_10283001_INS [dm3] 3L_10289901_INS [dm6]	A	ATCTA	1.639e^-4	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1366075	3L_1366075_SNP [dm3] 3L_1366075_SNP [dm6]	G	C	1.646e^-4	0.569	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	1124715	2R_1124715_SNP [dm3] 2R_5237210_SNP [dm6]	G	C	1.647e^-4	0.569	INTRON Nipped-A	transposable element FlyBase
X	4103255	X_4103255_SNP [dm3] X_4209222_SNP [dm6]	C	T	1.656e^-4	0.569	INTERGENIC
2L	16837539	2L_16837539_SNP [dm3] 2L_16837539_SNP [dm6]	G	C	1.659e^-4	0.569	UPSTREAM SclB & 2 others INTERGENIC
3R	26500772	3R_26500772_SNP [dm3] 3R_30675050_SNP [dm6]	C	G	1.664e^-4	0.569	INTERGENIC
3R	26500803	3R_26500803_SNP [dm3] 3R_30675081_SNP [dm6]	G	A	1.664e^-4	0.569	INTERGENIC
3L	2644180	3L_2644180_SNP [dm3] 3L_2644180_SNP [dm6]	G	T	1.677e^-4	0.569	UPSTREAM CG14949 INTERGENIC
3R	21403227	3R_21403227_SNP [dm3] 3R_25577505_SNP [dm6]	G	A	1.679e^-4	0.569	INTRON msi
3R	24253800	3R_24253800_SNP [dm3] 3R_28428078_SNP [dm6]	C	T	1.680e^-4	0.569	INTRON beat-VI
3L	10005322	3L_10005322_DEL [dm3] 3L_10012222_DEL [dm6]	CCTT	C	1.687e^-4	0.569	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9051526	2L_9051526_SNP [dm3] 2L_9051526_SNP [dm6]	C	A	1.687e^-4	0.569	DOWNSTREAM CG31708 INTERGENIC
2L	9051714	2L_9051714_DEL [dm3] 2L_9051714_DEL [dm6]	CG	C	1.687e^-4	0.569	UTR_3_PRIME CG31708
X	11877208	X_11877208_DEL [dm3] X_11983175_DEL [dm6]	TAT	T	1.687e^-4	0.569	INTRON cac
2L	9065307	2L_9065307_SNP [dm3] 2L_9065307_SNP [dm6]	A	C	1.687e^-4	0.569	INTRON CG31708
3R	23071537	3R_23071537_SNP [dm3] 3R_27245815_SNP [dm6]	C	T	1.694e^-4	0.569	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	19952650	3L_19952650_SNP [dm3] 3L_19959550_SNP [dm6]	T	C	1.694e^-4	0.569	INTRON Ac76E
3L	19952652	3L_19952652_SNP [dm3] 3L_19959552_SNP [dm6]	A	C	1.694e^-4	0.569	INTRON Ac76E
3L	3014496	3L_3014496_SNP [dm3] 3L_3014496_SNP [dm6]	A	T	1.700e^-4	0.57	DOWNSTREAM CG32488 INTERGENIC
2R	4266787	2R_4266787_SNP [dm3] 2R_8379282_SNP [dm6]	G	A	1.709e^-4	0.571	INTRON pdm3
3R	19112462	3R_19112462_SNP [dm3] 3R_23286740_SNP [dm6]	G	A	1.710e^-4	0.571	SYNONYMOUS_CODING CG17083 DOWNSTREAM CG6763	TF binding site mE1_TFBS_sens
2R	14005309	2R_14005309_SNP [dm3] 2R_18117804_SNP [dm6]	G	A	1.719e^-4	0.571	DOWNSTREAM stau INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20001138	3R_20001138_SNP [dm3] 3R_24175416_SNP [dm6]	T	A	1.721e^-4	0.571	INTRON CG13606
3L	12469558	3L_12469558_SNP [dm3] 3L_12476458_SNP [dm6]	C	T	1.721e^-4	0.571	SYNONYMOUS_CODING CG10663
2R	10219775	2R_10219775_SNP [dm3] 2R_14332270_SNP [dm6]	C	A	1.726e^-4	0.571	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9258199	2L_9258199_SNP [dm3] 2L_9258199_SNP [dm6]	G	C	1.726e^-4	0.571	INTRON Ggamma30A
2L	9355790	2L_9355790_SNP [dm3] 2L_9355790_SNP [dm6]	T	C	1.727e^-4	0.571	INTERGENIC
3R	26750975	3R_26750975_SNP [dm3] 3R_30925253_SNP [dm6]	G	A	1.730e^-4	0.571	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
4	483212	4_483212_SNP [dm3] 4_462586_SNP [dm6]	G	C	1.732e^-4	0.571	INTRON bip2
2L	19237485	2L_19237485_SNP [dm3] 2L_19237485_SNP [dm6]	C	G	1.738e^-4	0.571	INTERGENIC
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	1.755e^-4	0.575	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	14144599	2R_14144599_INS [dm3] 2R_18257094_INS [dm6]	C	TATATATTTG	1.757e^-4	0.575	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8071994	3R_8071994_SNP [dm3] 3R_12246272_SNP [dm6]	A	T	1.758e^-4	0.575	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9841971	2L_9841971_INS [dm3] 2L_9841971_INS [dm6]	A	AA	1.765e^-4	0.576	INTRON nAChRalpha6
2R	19774013	2R_19774013_SNP [dm3] 2R_23886490_SNP [dm6]	T	C	1.773e^-4	0.576	UPSTREAM CG5597 INTERGENIC
2R	17763452	2R_17763452_SNP [dm3] 2R_21875947_SNP [dm6]	G	T	1.776e^-4	0.576	INTRON Fili
2R	17763455	2R_17763455_SNP [dm3] 2R_21875950_SNP [dm6]	C	G	1.776e^-4	0.576	INTRON Fili
2L	7617012	2L_7617012_SNP [dm3] 2L_7617012_SNP [dm6]	C	T	1.777e^-4	0.576	DOWNSTREAM CG6739 INTERGENIC
3L	5390642	3L_5390642_SNP [dm3] 3L_5397542_SNP [dm6]	C	T	1.781e^-4	0.576	INTERGENIC
2L	9467269	2L_9467269_SNP [dm3] 2L_9467269_SNP [dm6]	T	C	1.782e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8168347	2L_8168347_SNP [dm3] 2L_8168347_SNP [dm6]	C	T	1.795e^-4	0.578	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22306257	3R_22306257_SNP [dm3] 3R_26480535_SNP [dm6]	T	C	1.796e^-4	0.578	INTRON plum
3R	10255330	3R_10255330_SNP [dm3] 3R_14429608_SNP [dm6]	A	T	1.813e^-4	0.582	INTRON cv-c
3R	16224081	3R_16224081_SNP [dm3] 3R_20398359_SNP [dm6]	T	A	1.821e^-4	0.582	INTRON Gfrl
3L	21042583	3L_21042583_SNP [dm3] 3L_21049483_SNP [dm6]	C	A	1.825e^-4	0.582	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	3699556	2R_3699556_SNP [dm3] 2R_7812051_SNP [dm6]	A	G	1.828e^-4	0.582	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	3699598	2R_3699598_SNP [dm3] 2R_7812093_SNP [dm6]	G	C	1.828e^-4	0.582	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	3699621	2R_3699621_SNP [dm3] 2R_7812116_SNP [dm6]	C	T	1.828e^-4	0.582	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
4	480342	4_480342_SNP [dm3] 4_459716_SNP [dm6]	G	A	1.843e^-4	0.586	UPSTREAM CR45126 DOWNSTREAM bip2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16837570	2L_16837570_DEL [dm3] 2L_16837570_DEL [dm6]	CTT	C	1.848e^-4	0.587	UPSTREAM SclB & 2 others INTERGENIC
2L	18585875	2L_18585875_SNP [dm3] 2L_18585875_SNP [dm6]	A	T	1.869e^-4	0.593	INTRON Pde11
2L	8178773	2L_8178773_SNP [dm3] 2L_8178773_SNP [dm6]	T	C	1.874e^-4	0.593	SYNONYMOUS_CODING Piezo
2R	8585280	2R_8585280_SNP [dm3] 2R_12697775_SNP [dm6]	G	C	1.882e^-4	0.593	INTERGENIC
3R	11014152	3R_11014152_SNP [dm3] 3R_15188430_SNP [dm6]	A	G	1.888e^-4	0.593	SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad
2L	16835900	2L_16835900_SNP [dm3] 2L_16835900_SNP [dm6]	T	G	1.890e^-4	0.593	NON_SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
4	487713	4_487713_SNP [dm3] 4_467087_SNP [dm6]	G	C	1.891e^-4	0.593	UPSTREAM pncr013:4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23070628	3R_23070628_SNP [dm3] 3R_27244906_SNP [dm6]	G	A	1.893e^-4	0.593	UPSTREAM CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3920066	2R_3920066_SNP [dm3] 2R_8032561_SNP [dm6]	G	T	1.897e^-4	0.593	INTRON Optix	TF binding site mE1_TFBS_sens
2R	6574011	2R_6574011_SNP [dm3] 2R_10686506_SNP [dm6]	T	C	1.901e^-4	0.593	INTRON stan
3R	2841797	3R_2841797_SNP [dm3] 3R_7016075_SNP [dm6]	C	A	1.901e^-4	0.593	INTERGENIC
2R	19548129	2R_19548129_SNP [dm3] 2R_23660606_SNP [dm6]	G	C	1.903e^-4	0.593	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	15940631	2R_15940631_SNP [dm3] 2R_20053126_SNP [dm6]	C	T	1.913e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9047730	2L_9047730_SNP [dm3] 2L_9047730_SNP [dm6]	C	T	1.915e^-4	0.593	INTERGENIC
3L	8873808	3L_8873808_SNP [dm3] 3L_8880708_SNP [dm6]	T	A	1.915e^-4	0.593	INTRON dally
2R	17414509	2R_17414509_SNP [dm3] 2R_21527004_SNP [dm6]	C	T	1.920e^-4	0.593	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19192762	2L_19192762_SNP [dm3] 2L_19192762_SNP [dm6]	C	A	1.921e^-4	0.593	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	20508058	3L_20508058_SNP [dm3] 3L_20514958_SNP [dm6]	G	T	1.922e^-4	0.593	UTR_3_PRIME CG5059 DOWNSTREAM CG32425	TF binding site BDTNP1_TFBS_dl
X	12346243	X_12346243_SNP [dm3] X_12452210_SNP [dm6]	C	T	1.929e^-4	0.593	INTRON Pkcdelta
3R	19916814	3R_19916814_SNP [dm3] 3R_24091092_SNP [dm6]	G	A	1.932e^-4	0.593	INTRON 4EHP
3L	10547978	3L_10547978_SNP [dm3] 3L_10554878_SNP [dm6]	A	G	1.934e^-4	0.593	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10262985	3L_10262985_SNP [dm3] 3L_10269885_SNP [dm6]	C	T	1.938e^-4	0.593	EXON CR45242	regulatory region REDfly_CRMs
3L	10262986	3L_10262986_SNP [dm3] 3L_10269886_SNP [dm6]	A	G	1.938e^-4	0.593	EXON CR45242	regulatory region REDfly_CRMs
3L	11642826	3L_11642826_SNP [dm3] 3L_11649726_SNP [dm6]	A	G	1.943e^-4	0.594	UTR_3_PRIME CG7339 DOWNSTREAM CG32085
2L	14842357	2L_14842357_SNP [dm3] 2L_14842357_SNP [dm6]	G	C	1.946e^-4	0.594	UPSTREAM CG42682 & 1 other INTERGENIC
3R	16638149	3R_16638149_SNP [dm3] 3R_20812427_SNP [dm6]	G	C	1.973e^-4	0.598	NON_SYNONYMOUS_CODING Fancd2
3R	16638154	3R_16638154_SNP [dm3] 3R_20812432_SNP [dm6]	G	A	1.973e^-4	0.598	SYNONYMOUS_CODING Fancd2
3R	25052675	3R_25052675_SNP [dm3] 3R_29226953_SNP [dm6]	G	A	1.980e^-4	0.598	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25052708	3R_25052708_INS [dm3] 3R_29226986_INS [dm6]	G	GTAGTTCTCGAG...	1.980e^-4	0.598	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8842871	3R_8842871_SNP [dm3] 3R_13017149_SNP [dm6]	C	T	1.992e^-4	0.598	UPSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	3571775	3L_3571775_SNP [dm3] 3L_3571775_SNP [dm6]	A	G	1.993e^-4	0.598	INTRON Eip63E
3L	3571823	3L_3571823_SNP [dm3] 3L_3571823_SNP [dm6]	C	A	1.993e^-4	0.598	INTRON Eip63E
3L	8304742	3L_8304742_SNP [dm3] 3L_8311642_SNP [dm6]	T	A	1.997e^-4	0.598	SPLICE_SITE_REGION CG7185 INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21863278	2L_21863278_INS [dm3] 2L_21863278_INS [dm6]	T	TA	2.002e^-4	0.598	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19943286	2L_19943286_SNP [dm3] 2L_19943286_SNP [dm6]	T	C	2.008e^-4	0.598	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15027167	2L_15027167_SNP [dm3] 2L_15027167_SNP [dm6]	G	C	2.010e^-4	0.598	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3R	8079696	3R_8079696_SNP [dm3] 3R_12253974_SNP [dm6]	G	A	2.016e^-4	0.598	UPSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	20534583	2L_20534583_SNP [dm3] 2L_20534583_SNP [dm6]	G	A	2.033e^-4	0.598	INTERGENIC
X	7743111	X_7743111_SNP [dm3] X_7849078_SNP [dm6]	A	C	2.046e^-4	0.598	INTERGENIC
3L	9976769	3L_9976769_SNP [dm3] 3L_9983669_SNP [dm6]	C	A	2.053e^-4	0.598	INTRON dpr6
2R	19640603	2R_19640603_SNP [dm3] 2R_23753080_SNP [dm6]	C	T	2.053e^-4	0.598	SYNONYMOUS_CODING CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2998671	3L_2998671_SNP [dm3] 3L_2998671_SNP [dm6]	A	G	2.058e^-4	0.598	INTERGENIC
2R	17613192	2R_17613192_DEL [dm3] 2R_21725687_DEL [dm6]	GG	G	2.058e^-4	0.598	INTERGENIC
3R	10264082	3R_10264082_SNP [dm3] 3R_14438360_SNP [dm6]	T	A	2.058e^-4	0.598	INTRON cv-c
3L	7058008	3L_7058008_SNP [dm3] 3L_7064908_SNP [dm6]	A	T	2.074e^-4	0.598	INTRON CG8641
3L	7058017	3L_7058017_SNP [dm3] 3L_7064917_SNP [dm6]	A	T	2.074e^-4	0.598	INTRON CG8641
3R	7876352	3R_7876352_SNP [dm3] 3R_12050630_SNP [dm6]	A	T	2.074e^-4	0.598	INTERGENIC
3R	12253728	3R_12253728_SNP [dm3] 3R_16428006_SNP [dm6]	C	G	2.077e^-4	0.598	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
3R	9750715	3R_9750715_SNP [dm3] 3R_13924993_SNP [dm6]	C	T	2.078e^-4	0.598	INTERGENIC
3R	16638042	3R_16638042_SNP [dm3] 3R_20812320_SNP [dm6]	C	T	2.082e^-4	0.598	NON_SYNONYMOUS_CODING Fancd2
3L	1031967	3L_1031967_SNP [dm3] 3L_1031967_SNP [dm6]	G	A	2.084e^-4	0.598	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8371698	2L_8371698_SNP [dm3] 2L_8371698_SNP [dm6]	T	C	2.091e^-4	0.598	UPSTREAM CG17292 INTRON CG17292
3R	26950512	3R_26950512_SNP [dm3] 3R_31124790_SNP [dm6]	A	T	2.097e^-4	0.598	INTERGENIC
3R	21189648	3R_21189648_SNP [dm3] 3R_25363926_SNP [dm6]	T	C	2.101e^-4	0.598	INTRON Fur1
2L	13352921	2L_13352921_SNP [dm3] 2L_13352921_SNP [dm6]	C	A	2.107e^-4	0.598	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18531081	X_18531081_DEL [dm3] X_18637048_DEL [dm6]	GG	G	2.111e^-4	0.598	INTRON Rip11
2L	10904294	2L_10904294_SNP [dm3] 2L_10904294_SNP [dm6]	C	T	2.112e^-4	0.598	UPSTREAM CR45724 INTERGENIC
3L	13822292	3L_13822292_SNP [dm3] 3L_13829192_SNP [dm6]	C	A	2.115e^-4	0.598	INTERGENIC
3L	13822344	3L_13822344_SNP [dm3] 3L_13829244_SNP [dm6]	A	G	2.115e^-4	0.598	INTERGENIC
3L	7723401	3L_7723401_SNP [dm3] 3L_7730301_SNP [dm6]	C	T	2.115e^-4	0.598	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23928940	3L_23928940_DEL [dm3] 3L_23935840_DEL [dm6]	GATG	A	2.118e^-4	0.598	INTRON CG40470
3R	8040153	3R_8040153_DEL [dm3] 3R_12214431_DEL [dm6]	CAA	C	2.120e^-4	0.598	UTR_3_PRIME CG4848 UPSTREAM CG14742
3L	1474653	3L_1474653_SNP [dm3] 3L_1474653_SNP [dm6]	T	A	2.127e^-4	0.598	UTR_5_PRIME Ptp61F DOWNSTREAM stet
2R	6234786	2R_6234786_SNP [dm3] 2R_10347281_SNP [dm6]	C	A	2.127e^-4	0.598	INTRON CG42732
3R	10250897	3R_10250897_SNP [dm3] 3R_14425175_SNP [dm6]	G	T	2.128e^-4	0.598	INTRON cv-c
2R	17368981	2R_17368981_SNP [dm3] 2R_21481476_SNP [dm6]	A	T	2.131e^-4	0.598	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8873699	3L_8873699_SNP [dm3] 3L_8880599_SNP [dm6]	A	G	2.131e^-4	0.598	INTRON dally
3R	26851598	3R_26851598_SNP [dm3] 3R_31025876_SNP [dm6]	C	A	2.132e^-4	0.598	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9069689	2L_9069689_SNP [dm3] 2L_9069689_SNP [dm6]	G	T	2.136e^-4	0.598	INTRON CG31708
2L	10112972	2L_10112972_SNP [dm3] 2L_10112972_SNP [dm6]	A	G	2.139e^-4	0.598	INTRON CG44153 & 1 other
2L	10113043	2L_10113043_SNP [dm3] 2L_10113043_SNP [dm6]	T	C	2.139e^-4	0.598	INTRON CG44153 & 1 other
2L	12875173	2L_12875173_SNP [dm3] 2L_12875173_SNP [dm6]	T	C	2.139e^-4	0.598	INTERGENIC
2L	13642110	2L_13642110_SNP [dm3] 2L_13642110_SNP [dm6]	T	C	2.139e^-4	0.598	UTR_5_PRIME ics UPSTREAM ics & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13642114	2L_13642114_SNP [dm3] 2L_13642114_SNP [dm6]	T	C	2.139e^-4	0.598	UTR_5_PRIME ics UPSTREAM ics & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20424417	2L_20424417_SNP [dm3] 2L_20424417_SNP [dm6]	T	C	2.139e^-4	0.598	SYNONYMOUS_CODING CG15130	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6537291	2R_6537291_SNP [dm3] 2R_10649786_SNP [dm6]	G	T	2.139e^-4	0.598	UTR_3_PRIME CG12934 DOWNSTREAM CG12934
3L	12309656	3L_12309656_SNP [dm3] 3L_12316556_SNP [dm6]	T	C	2.139e^-4	0.598	INTERGENIC
3L	12309702	3L_12309702_SNP [dm3] 3L_12316602_SNP [dm6]	A	G	2.139e^-4	0.598	INTERGENIC
3L	23934645	3L_23934645_SNP [dm3] 3L_23941545_SNP [dm6]	A	C	2.139e^-4	0.598	INTRON CG40470
X	19357290	X_19357290_SNP [dm3] X_19463257_SNP [dm6]	T	C	2.139e^-4	0.598	INTRON kek5
3R	20517771	3R_20517771_DEL [dm3] 3R_24692049_DEL [dm6]	TT	T	2.169e^-4	0.601	INTRON slo
X	19226030	X_19226030_DEL [dm3] X_19331997_DEL [dm6]	TTT	T	2.169e^-4	0.601	INTRON nAChRalpha7	TF binding site mE1_TFBS_kn
X	22038336	X_22038336_SNP [dm3] X_22636500_SNP [dm6]	G	T	2.173e^-4	0.601	INTERGENIC
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	2.174e^-4	0.601	INTRON slo
X	12199100	X_12199100_DEL [dm3] X_12305067_DEL [dm6]	AC	A	2.180e^-4	0.601	INTRON Ten-a
2R	9198215	2R_9198215_SNP [dm3] 2R_13310710_SNP [dm6]	G	A	2.183e^-4	0.601	INTERGENIC
X	19515826	X_19515826_INS [dm3] X_19621793_INS [dm6]	C	CTGTGG	2.183e^-4	0.601	UTR_3_PRIME NAA20 UPSTREAM CG14221 INTRON NAA20
2L	4618602	2L_4618602_SNP [dm3] 2L_4618602_SNP [dm6]	G	T	2.185e^-4	0.601	UPSTREAM CR44609 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14536962	2R_14536962_SNP [dm3] 2R_18649457_SNP [dm6]	C	T	2.188e^-4	0.601	INTRON SP2637
X	12346241	X_12346241_INS [dm3] X_12452208_INS [dm6]	T	TAT	2.190e^-4	0.601	INTRON Pkcdelta
3L	22655495	3L_22655495_SNP [dm3] 3L_22662395_SNP [dm6]	C	T	2.190e^-4	0.601	INTERGENIC
3L	1031373	3L_1031373_SNP [dm3] 3L_1031373_SNP [dm6]	G	A	2.196e^-4	0.601	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	619922	2L_619922_SNP [dm3] 2L_619922_SNP [dm6]	G	C	2.199e^-4	0.601	DOWNSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9947296	X_9947296_SNP [dm3] X_10053263_SNP [dm6]	G	C	2.219e^-4	0.601	UPSTREAM Yp2 & 1 other DOWNSTREAM CR45601 INTERGENIC	regulatory region REDfly_CRMs
3R	10573783	3R_10573783_SNP [dm3] 3R_14748061_SNP [dm6]	G	A	2.222e^-4	0.601	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	19720494	X_19720494_SNP [dm3] X_19826461_SNP [dm6]	G	A	2.225e^-4	0.601	INTERGENIC
3R	15582242	3R_15582242_SNP [dm3] 3R_19756520_SNP [dm6]	T	C	2.226e^-4	0.601	INTRON GluClalpha
3L	3590742	3L_3590742_SNP [dm3] 3L_3590742_SNP [dm6]	G	A	2.226e^-4	0.601	INTRON Eip63E
3L	20501957	3L_20501957_SNP [dm3] 3L_20508857_SNP [dm6]	C	G	2.237e^-4	0.601	UPSTREAM CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20502071	3L_20502071_SNP [dm3] 3L_20508971_SNP [dm6]	G	A	2.237e^-4	0.601	UPSTREAM CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20503091	3L_20503091_SNP [dm3] 3L_20509991_SNP [dm6]	A	T	2.237e^-4	0.601	INTRON CG32425	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	20508764	3L_20508764_SNP [dm3] 3L_20515664_SNP [dm6]	G	C	2.237e^-4	0.601	INTRON CG5059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	20509526	3L_20509526_SNP [dm3] 3L_20516426_SNP [dm6]	G	T	2.237e^-4	0.601	INTRON CG5059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3L	20516693	3L_20516693_SNP [dm3] 3L_20523593_SNP [dm6]	A	G	2.237e^-4	0.601	INTRON CG4825
3L	20523172	3L_20523172_SNP [dm3] 3L_20530072_SNP [dm6]	G	A	2.237e^-4	0.601	INTRON Rcd2
3L	20524370	3L_20524370_SNP [dm3] 3L_20531270_SNP [dm6]	T	C	2.237e^-4	0.601	INTRON Rcd2
3L	6917783	3L_6917783_SNP [dm3] 3L_6924683_SNP [dm6]	C	A	2.239e^-4	0.601	INTERGENIC
3L	21936038	3L_21936038_SNP [dm3] 3L_21942938_SNP [dm6]	A	G	2.262e^-4	0.601	INTRON CG14562	TF binding site mE1_TFBS_sens
3L	21936208	3L_21936208_SNP [dm3] 3L_21943108_SNP [dm6]	A	C	2.262e^-4	0.601	INTRON CG14562
3L	21936224	3L_21936224_SNP [dm3] 3L_21943124_SNP [dm6]	C	G	2.262e^-4	0.601	INTRON CG14562
3R	13380650	3R_13380650_SNP [dm3] 3R_17554928_SNP [dm6]	T	G	2.264e^-4	0.601	INTERGENIC
3R	6909274	3R_6909274_SNP [dm3] 3R_11083552_SNP [dm6]	C	T	2.264e^-4	0.601	DOWNSTREAM CR44940 INTERGENIC
3L	8366682	3L_8366682_DEL [dm3] 3L_8373582_DEL [dm6]	TT	T	2.269e^-4	0.601	INTRON ImpE1	TF binding site mE1_TFBS_cad
4	483008	4_483008_SNP [dm3] 4_462382_SNP [dm6]	A	G	2.271e^-4	0.601	SPLICE_SITE_REGION bip2 DOWNSTREAM CR45126 INTRON bip2
X	17923320	X_17923320_SNP [dm3] X_18029287_SNP [dm6]	T	C	2.275e^-4	0.601	INTRON Sh
X	17923364	X_17923364_SNP [dm3] X_18029331_SNP [dm6]	T	A	2.275e^-4	0.601	INTRON Sh
X	17923369	X_17923369_SNP [dm3] X_18029336_SNP [dm6]	A	C	2.275e^-4	0.601	INTRON Sh
X	17923376	X_17923376_SNP [dm3] X_18029343_SNP [dm6]	A	G	2.275e^-4	0.601	INTRON Sh
3L	11660081	3L_11660081_SNP [dm3] 3L_11666981_SNP [dm6]	A	G	2.295e^-4	0.603	INTRON CG32085
3L	854921	3L_854921_SNP [dm3] 3L_854921_SNP [dm6]	C	A	2.297e^-4	0.603	NON_SYNONYMOUS_CODING dpr20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7462235	2L_7462235_SNP [dm3] 2L_7462235_SNP [dm6]	C	T	2.298e^-4	0.603	NON_SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad
3R	17022348	3R_17022348_SNP [dm3] 3R_21196626_SNP [dm6]	A	C	2.300e^-4	0.603	INTRON SNF4Agamma
2L	12367730	2L_12367730_SNP [dm3] 2L_12367730_SNP [dm6]	G	A	2.305e^-4	0.603	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	13856117	3L_13856117_INS [dm3] 3L_13863017_INS [dm6]	A	AGCAGAA	2.306e^-4	0.603	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	13856124	3L_13856124_SNP [dm3] 3L_13863024_SNP [dm6]	T	G	2.306e^-4	0.603	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	16203171	3L_16203171_SNP [dm3] 3L_16210071_SNP [dm6]	G	A	2.310e^-4	0.603	INTERGENIC
3R	9776074	3R_9776074_SNP [dm3] 3R_13950352_SNP [dm6]	T	C	2.310e^-4	0.603	UTR_3_PRIME CG9926 DOWNSTREAM CG31517
3L	19038834	3L_19038834_SNP [dm3] 3L_19045734_SNP [dm6]	T	G	2.314e^-4	0.603	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	2637988	3R_2637988_SNP [dm3] 3R_6812266_SNP [dm6]	C	T	2.316e^-4	0.603	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18608060	2R_18608060_SNP [dm3] 2R_22720555_SNP [dm6]	A	G	2.321e^-4	0.603	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11130984	3L_11130984_SNP [dm3] 3L_11137884_SNP [dm6]	G	A	2.330e^-4	0.604	INTRON CG32082
3R	11010943	3R_11010943_SNP [dm3] 3R_15185221_SNP [dm6]	C	T	2.340e^-4	0.606	INTRON Gyc88E	TF binding site mE1_TFBS_cad
3R	10727836	3R_10727836_SNP [dm3] 3R_14902114_SNP [dm6]	C	A	2.342e^-4	0.606	UPSTREAM RpS5b DOWNSTREAM VhaPPA1-1 INTERGENIC
2L	17516116	2L_17516116_SNP [dm3] 2L_17516116_SNP [dm6]	C	A	2.350e^-4	0.607	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
3L	2997999	3L_2997999_SNP [dm3] 3L_2997999_SNP [dm6]	C	A	2.353e^-4	0.607	INTERGENIC
3R	4855045	3R_4855045_SNP [dm3] 3R_9029323_SNP [dm6]	G	A	2.358e^-4	0.607	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21051258	3R_21051258_SNP [dm3] 3R_25225536_SNP [dm6]	G	A	2.362e^-4	0.608	INTRON Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13759585	2L_13759585_SNP [dm3] 2L_13759585_SNP [dm6]	A	G	2.374e^-4	0.61	INTRON TM9SF4
2L	7096890	2L_7096890_SNP [dm3] 2L_7096890_SNP [dm6]	T	C	2.377e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19941706	2L_19941706_SNP [dm3] 2L_19941706_SNP [dm6]	G	T	2.396e^-4	0.614	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12233208	2L_12233208_SNP [dm3] 2L_12233208_SNP [dm6]	A	T	2.401e^-4	0.614	INTRON aret
2R	17695431	2R_17695431_INS [dm3] 2R_21807926_INS [dm6]	T	TGT	2.404e^-4	0.614	INTERGENIC
3R	4924002	3R_4924002_SNP [dm3] 3R_9098280_SNP [dm6]	G	A	2.407e^-4	0.614	INTRON pum	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11877236	X_11877236_SNP [dm3] X_11983203_SNP [dm6]	T	G	2.426e^-4	0.618	INTRON cac
3L	9590275	3L_9590275_SNP [dm3] 3L_9597175_SNP [dm6]	T	C	2.431e^-4	0.618	UPSTREAM CG14177 DOWNSTREAM CG42673 INTERGENIC
2L	17403318	2L_17403318_SNP [dm3] 2L_17403318_SNP [dm6]	C	T	2.432e^-4	0.618	INTRON CLIP-190
X	10819678	X_10819678_SNP [dm3] X_10925645_SNP [dm6]	C	T	2.444e^-4	0.619	DOWNSTREAM v INTERGENIC
2R	18616573	2R_18616573_SNP [dm3] 2R_22729068_SNP [dm6]	T	C	2.444e^-4	0.619	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7162632	3L_7162632_SNP [dm3] 3L_7169532_SNP [dm6]	C	T	2.447e^-4	0.619	INTRON Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6967642	3L_6967642_DEL [dm3] 3L_6974542_DEL [dm6]	AGGAAGTGTGAGCTCAATAT...	A	2.454e^-4	0.62	INTRON Galphai
3R	8110217	3R_8110217_SNP [dm3] 3R_12284495_SNP [dm6]	C	G	2.463e^-4	0.62	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8110324	3R_8110324_SNP [dm3] 3R_12284602_SNP [dm6]	A	C	2.463e^-4	0.62	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12233776	X_12233776_SNP [dm3] X_12339743_SNP [dm6]	A	G	2.474e^-4	0.62	INTERGENIC
3L	15687416	3L_15687416_SNP [dm3] 3L_15694316_SNP [dm6]	G	A	2.485e^-4	0.62	INTERGENIC
3L	3592330	3L_3592330_SNP [dm3] 3L_3592330_SNP [dm6]	A	C	2.485e^-4	0.62	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26990380	3R_26990380_INS [dm3] 3R_31164658_INS [dm6]	G	GTGAACTAGCAGTGGA...	2.485e^-4	0.62	INTRON Gycbeta100B & 1 other
3R	26990530	3R_26990530_SNP [dm3] 3R_31164808_SNP [dm6]	T	G	2.485e^-4	0.62	INTRON Gycbeta100B & 1 other
3R	4860857	3R_4860857_SNP [dm3] 3R_9035135_SNP [dm6]	A	C	2.485e^-4	0.62	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4860861	3R_4860861_SNP [dm3] 3R_9035139_SNP [dm6]	A	T	2.485e^-4	0.62	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10280300	3L_10280300_SNP [dm3] 3L_10287200_SNP [dm6]	A	G	2.492e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16837584	2L_16837584_SNP [dm3] 2L_16837584_SNP [dm6]	T	G	2.506e^-4	0.622	UPSTREAM SclB & 2 others INTERGENIC
3R	8885950	3R_8885950_SNP [dm3] 3R_13060228_SNP [dm6]	T	A	2.517e^-4	0.622	INTRON sim	TF binding site BDTNP1_TFBS_prd
2L	10432979	2L_10432979_SNP [dm3] 2L_10432979_SNP [dm6]	T	A	2.525e^-4	0.622	UTR_3_PRIME TfIIB & 1 other DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
3R	4892359	3R_4892359_SNP [dm3] 3R_9066637_SNP [dm6]	G	A	2.527e^-4	0.622	UTR_3_PRIME pum DOWNSTREAM Ada & 1 other
3R	23966652	3R_23966652_SNP [dm3] 3R_28140930_SNP [dm6]	G	A	2.537e^-4	0.622	INTERGENIC
3R	17023107	3R_17023107_SNP [dm3] 3R_21197385_SNP [dm6]	T	C	2.546e^-4	0.622	INTRON SNF4Agamma
2R	15333961	2R_15333961_SNP [dm3] 2R_19446456_SNP [dm6]	A	T	2.554e^-4	0.622	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11639026	2L_11639026_SNP [dm3] 2L_11639026_SNP [dm6]	T	C	2.561e^-4	0.622	INTERGENIC
X	4752203	X_4752203_SNP [dm3] X_4858170_SNP [dm6]	A	C	2.565e^-4	0.622	INTRON CG42594
2R	20480822	2R_20480822_SNP [dm3] 2R_24593299_SNP [dm6]	T	C	2.571e^-4	0.622	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24253795	3R_24253795_SNP [dm3] 3R_28428073_SNP [dm6]	A	T	2.572e^-4	0.622	INTRON beat-VI
2R	9136311	2R_9136311_SNP [dm3] 2R_13248806_SNP [dm6]	T	A	2.591e^-4	0.622	DOWNSTREAM CG4712 INTRON Mp20
2R	9136664	2R_9136664_SNP [dm3] 2R_13249159_SNP [dm6]	T	A	2.591e^-4	0.622	SYNONYMOUS_CODING CG4712 DOWNSTREAM Mp20
3R	27490292	3R_27490292_SNP [dm3] 3R_31664570_SNP [dm6]	A	T	2.591e^-4	0.622	UTR_3_PRIME kek6
3R	7605320	3R_7605320_SNP [dm3] 3R_11779598_SNP [dm6]	C	A	2.591e^-4	0.622	UPSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_ttk
3R	9623751	3R_9623751_SNP [dm3] 3R_13798029_SNP [dm6]	C	G	2.591e^-4	0.622	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9623817	3R_9623817_SNP [dm3] 3R_13798095_SNP [dm6]	G	A	2.591e^-4	0.622	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9623853	3R_9623853_SNP [dm3] 3R_13798131_SNP [dm6]	T	A	2.591e^-4	0.622	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13359849	2L_13359849_SNP [dm3] 2L_13359849_SNP [dm6]	T	A	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359864	2L_13359864_SNP [dm3] 2L_13359864_SNP [dm6]	T	C	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359869	2L_13359869_SNP [dm3] 2L_13359869_SNP [dm6]	C	T	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359886	2L_13359886_SNP [dm3] 2L_13359886_SNP [dm6]	C	T	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359887	2L_13359887_INS [dm3] 2L_13359887_INS [dm6]	A	AGGTTGC	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359891	2L_13359891_SNP [dm3] 2L_13359891_SNP [dm6]	T	C	2.593e^-4	0.622	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
3R	2832319	3R_2832319_SNP [dm3] 3R_7006597_SNP [dm6]	C	T	2.593e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2884672	3L_2884672_SNP [dm3] 3L_2884672_SNP [dm6]	G	A	2.594e^-4	0.622	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11638237	3L_11638237_SNP [dm3] 3L_11645137_SNP [dm6]	C	G	2.594e^-4	0.622	NON_SYNONYMOUS_CODING CG6071
3R	26073865	3R_26073865_SNP [dm3] 3R_30248143_SNP [dm6]	A	C	2.594e^-4	0.622	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19038813	3L_19038813_SNP [dm3] 3L_19045713_SNP [dm6]	T	A	2.595e^-4	0.622	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	21048479	X_21048479_SNP [dm3] X_21177452_SNP [dm6]	T	A	2.599e^-4	0.622	INTERGENIC	transposable element FlyBase
3R	26676067	3R_26676067_SNP [dm3] 3R_30850345_SNP [dm6]	A	C	2.604e^-4	0.622	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	21244625	X_21244625_SNP [dm3] X_21373598_SNP [dm6]	A	C	2.609e^-4	0.622	UPSTREAM slgA & 1 other DOWNSTREAM CR45611 & 2 others INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10283149	3L_10283149_SNP [dm3] 3L_10290049_SNP [dm6]	C	T	2.614e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5882047	3R_5882047_SNP [dm3] 3R_10056325_SNP [dm6]	T	C	2.614e^-4	0.622	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7500993	2R_7500993_SNP [dm3] 2R_11613488_SNP [dm6]	C	A	2.615e^-4	0.622	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10936003	3R_10936003_SNP [dm3] 3R_15110281_SNP [dm6]	A	T	2.619e^-4	0.623	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3L	21244565	3L_21244565_SNP [dm3] 3L_21251465_SNP [dm6]	A	T	2.635e^-4	0.626	INTRON Eip78C
3R	15820397	3R_15820397_SNP [dm3] 3R_19994675_SNP [dm6]	A	T	2.638e^-4	0.626	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1354672	2L_1354672_SNP [dm3] 2L_1354672_SNP [dm6]	T	C	2.646e^-4	0.627	NON_SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
2R	16410102	2R_16410102_SNP [dm3] 2R_20522597_SNP [dm6]	T	G	2.653e^-4	0.627	INTERGENIC
3R	22994105	3R_22994105_SNP [dm3] 3R_27168383_SNP [dm6]	C	T	2.656e^-4	0.627	INTERGENIC	regulatory region REDfly_CRMs
3R	26553731	3R_26553731_SNP [dm3] 3R_30728009_SNP [dm6]	T	A	2.657e^-4	0.627	UTR_3_PRIME CG1340 DOWNSTREAM CG1340	TF binding site mE1_TFBS_chinmo
3L	13857465	3L_13857465_SNP [dm3] 3L_13864365_SNP [dm6]	G	A	2.661e^-4	0.627	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	19466804	3L_19466804_INS [dm3] 3L_19473704_INS [dm6]	G	GTTG	2.677e^-4	0.628	DOWNSTREAM CG12519 INTERGENIC
3R	16223838	3R_16223838_SNP [dm3] 3R_20398116_SNP [dm6]	A	T	2.686e^-4	0.628	INTRON Gfrl
2R	18608069	2R_18608069_SNP [dm3] 2R_22720564_SNP [dm6]	T	C	2.691e^-4	0.628	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22997854	3R_22997854_SNP [dm3] 3R_27172132_SNP [dm6]	C	A	2.697e^-4	0.628	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
2L	12368188	2L_12368188_SNP [dm3] 2L_12368188_SNP [dm6]	T	A	2.701e^-4	0.628	INTRON bru-2
2L	13067735	2L_13067735_INS [dm3] 2L_13067735_INS [dm6]	A	ACAATA	2.709e^-4	0.628	INTERGENIC
3R	8079720	3R_8079720_SNP [dm3] 3R_12253998_SNP [dm6]	C	A	2.715e^-4	0.628	UPSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9195957	2R_9195957_SNP [dm3] 2R_13308452_SNP [dm6]	G	A	2.720e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9195966	2R_9195966_SNP [dm3] 2R_13308461_SNP [dm6]	T	A	2.720e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9195968	2R_9195968_DEL [dm3] 2R_13308463_DEL [dm6]	TGTG	T	2.720e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9195975	2R_9195975_INS [dm3] 2R_13308470_INS [dm6]	A	AGC	2.720e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17767167	2R_17767167_SNP [dm3] 2R_21879662_SNP [dm6]	C	G	2.721e^-4	0.628	INTRON Fili
3L	2999955	3L_2999955_SNP [dm3] 3L_2999955_SNP [dm6]	G	A	2.722e^-4	0.628	INTERGENIC
3L	19038892	3L_19038892_SNP [dm3] 3L_19045792_SNP [dm6]	G	A	2.728e^-4	0.628	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19038995	3L_19038995_SNP [dm3] 3L_19045895_SNP [dm6]	G	A	2.728e^-4	0.628	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19039044	3L_19039044_SNP [dm3] 3L_19045944_SNP [dm6]	C	T	2.728e^-4	0.628	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19039058	3L_19039058_SNP [dm3] 3L_19045958_SNP [dm6]	T	C	2.728e^-4	0.628	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19039063	3L_19039063_SNP [dm3] 3L_19045963_SNP [dm6]	C	A	2.728e^-4	0.628	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10004858	3L_10004858_SNP [dm3] 3L_10011758_SNP [dm6]	G	A	2.746e^-4	0.63	INTRON dpr6	TF binding site mE1_TFBS_HSA
3L	11652649	3L_11652649_SNP [dm3] 3L_11659549_SNP [dm6]	A	C	2.746e^-4	0.63	INTRON CG32085
3L	11652650	3L_11652650_SNP [dm3] 3L_11659550_SNP [dm6]	A	C	2.746e^-4	0.63	INTRON CG32085
2L	14075418	2L_14075418_SNP [dm3] 2L_14075418_SNP [dm6]	A	G	2.751e^-4	0.63	INTRON nAChRalpha5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9124704	2L_9124704_SNP [dm3] 2L_9124704_SNP [dm6]	A	T	2.764e^-4	0.632	DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23068033	3R_23068033_SNP [dm3] 3R_27242311_SNP [dm6]	G	A	2.766e^-4	0.632	UTR_3_PRIME CG17991 DOWNSTREAM CG18766
3R	23072024	3R_23072024_SNP [dm3] 3R_27246302_SNP [dm6]	T	G	2.766e^-4	0.632	DOWNSTREAM CG5984 INTERGENIC
3R	17799205	3R_17799205_SNP [dm3] 3R_21973483_SNP [dm6]	C	T	2.775e^-4	0.633	INTRON Eip93F
2L	8168319	2L_8168319_SNP [dm3] 2L_8168319_SNP [dm6]	T	A	2.790e^-4	0.635	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14544909	2L_14544909_SNP [dm3] 2L_14544909_SNP [dm6]	G	A	2.793e^-4	0.635	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14082525	2L_14082525_SNP [dm3] 2L_14082525_SNP [dm6]	A	G	2.799e^-4	0.635	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
X	4168559	X_4168559_SNP [dm3] X_4274526_SNP [dm6]	G	T	2.801e^-4	0.635	DOWNSTREAM CR45483 INTERGENIC
2R	15487903	2R_15487903_SNP [dm3] 2R_19600398_SNP [dm6]	C	T	2.803e^-4	0.635	INTRON sm
2L	4231408	2L_4231408_SNP [dm3] 2L_4231408_SNP [dm6]	T	A	2.807e^-4	0.635	INTERGENIC
3R	19916762	3R_19916762_SNP [dm3] 3R_24091040_SNP [dm6]	G	A	2.816e^-4	0.635	INTRON 4EHP
3R	22741259	3R_22741259_SNP [dm3] 3R_26915537_SNP [dm6]	C	G	2.827e^-4	0.635	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22741267	3R_22741267_SNP [dm3] 3R_26915545_SNP [dm6]	G	A	2.827e^-4	0.635	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8178419	2L_8178419_SNP [dm3] 2L_8178419_SNP [dm6]	A	G	2.830e^-4	0.635	INTRON Piezo	TF binding site mE1_TFBS_chinmo
3R	23072223	3R_23072223_SNP [dm3] 3R_27246501_SNP [dm6]	T	G	2.838e^-4	0.635	UTR_3_PRIME CG5984
3R	8850389	3R_8850389_SNP [dm3] 3R_13024667_SNP [dm6]	A	T	2.848e^-4	0.635	DOWNSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16531762	2R_16531762_SNP [dm3] 2R_20644257_SNP [dm6]	G	A	2.859e^-4	0.635	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16532287	2R_16532287_SNP [dm3] 2R_20644782_SNP [dm6]	C	T	2.859e^-4	0.635	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2R	8352922	2R_8352922_SNP [dm3] 2R_12465417_SNP [dm6]	T	C	2.859e^-4	0.635	UTR_3_PRIME Lac DOWNSTREAM dgt5
3L	13869142	3L_13869142_SNP [dm3] 3L_13876042_SNP [dm6]	C	A	2.859e^-4	0.635	INTRON dysc
3L	2715232	3L_2715232_SNP [dm3] 3L_2715232_SNP [dm6]	C	T	2.859e^-4	0.635	INTERGENIC
3L	3813072	3L_3813072_SNP [dm3] 3L_3813072_SNP [dm6]	C	T	2.859e^-4	0.635	INTRON CG12006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3813111	3L_3813111_SNP [dm3] 3L_3813111_SNP [dm6]	T	G	2.859e^-4	0.635	SPLICE_SITE_REGION CG12006 INTRON CG12006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17798766	3R_17798766_SNP [dm3] 3R_21973044_SNP [dm6]	A	C	2.859e^-4	0.635	INTRON Eip93F	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18350381	3R_18350381_SNP [dm3] 3R_22524659_SNP [dm6]	C	A	2.859e^-4	0.635	INTRON CG5346	TF binding site mE1_TFBS_sens
2L	14060754	2L_14060754_SNP [dm3] 2L_14060754_SNP [dm6]	C	G	2.869e^-4	0.635	INTRON nAChRalpha5
X	20010903	X_20010903_SNP [dm3] X_20116870_SNP [dm6]	C	T	2.870e^-4	0.635	INTERGENIC
2R	1139018	2R_1139018_SNP [dm3] 2R_5251513_SNP [dm6]	A	T	2.873e^-4	0.635	UPSTREAM Nipped-A INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3610085	2L_3610085_SNP [dm3] 2L_3610085_SNP [dm6]	C	T	2.874e^-4	0.635	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26818383	3R_26818383_SNP [dm3] 3R_30992661_SNP [dm6]	A	G	2.879e^-4	0.635	UPSTREAM CG31007 INTRON 5-HT7
3L	12364252	3L_12364252_SNP [dm3] 3L_12371152_SNP [dm6]	T	A	2.879e^-4	0.635	INTRON Ncc69
X	7258273	X_7258273_SNP [dm3] X_7364240_SNP [dm6]	A	G	2.899e^-4	0.638	INTRON CG1677 & 1 other
3R	8133545	3R_8133545_SNP [dm3] 3R_12307823_SNP [dm6]	C	G	2.905e^-4	0.638	INTERGENIC
3L	10948125	3L_10948125_INS [dm3] 3L_10955025_INS [dm6]	A	AA	2.912e^-4	0.638	INTERGENIC
2L	13443500	2L_13443500_SNP [dm3] 2L_13443500_SNP [dm6]	C	A	2.916e^-4	0.638	DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad
2L	11895225	2L_11895225_SNP [dm3] 2L_11895225_SNP [dm6]	T	A	2.919e^-4	0.638	INTRON Pde1c
3L	11086791	3L_11086791_SNP [dm3] 3L_11093691_SNP [dm6]	T	C	2.923e^-4	0.638	SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	16063251	3L_16063251_SNP [dm3] 3L_16070151_SNP [dm6]	C	T	2.930e^-4	0.638	NON_SYNONYMOUS_CODING Mbs UTR_3_PRIME Mbs
X	17185581	X_17185581_INS [dm3] X_17291548_INS [dm6]	C	CAAAGGAGAGAGC...	2.936e^-4	0.638	UTR_5_PRIME Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25846804	3R_25846804_SNP [dm3] 3R_30021082_SNP [dm6]	C	A	2.938e^-4	0.638	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15415333	2L_15415333_SNP [dm3] 2L_15415333_SNP [dm6]	C	T	2.949e^-4	0.638	INTERGENIC
3R	17885239	3R_17885239_SNP [dm3] 3R_22059517_SNP [dm6]	C	T	2.954e^-4	0.638	INTRON how
3R	17885242	3R_17885242_SNP [dm3] 3R_22059520_SNP [dm6]	G	A	2.954e^-4	0.638	INTRON how
3R	17885244	3R_17885244_SNP [dm3] 3R_22059522_SNP [dm6]	C	T	2.954e^-4	0.638	INTRON how
2L	15764777	2L_15764777_SNP [dm3] 2L_15764777_SNP [dm6]	A	G	2.954e^-4	0.638	SPLICE_SITE_REGION CG3793 INTRON CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17141836	2L_17141836_SNP [dm3] 2L_17141836_SNP [dm6]	T	A	2.957e^-4	0.638	INTRON beat-IIIa & 1 other
2L	17141934	2L_17141934_SNP [dm3] 2L_17141934_SNP [dm6]	G	A	2.957e^-4	0.638	INTRON beat-IIIa & 1 other
2L	17156563	2L_17156563_SNP [dm3] 2L_17156563_SNP [dm6]	A	G	2.957e^-4	0.638	INTRON beat-IIIa & 1 other
2L	17161034	2L_17161034_SNP [dm3] 2L_17161034_SNP [dm6]	C	A	2.957e^-4	0.638	INTRON beat-IIIa & 1 other
2L	14082452	2L_14082452_SNP [dm3] 2L_14082452_SNP [dm6]	G	A	2.964e^-4	0.638	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8147576	3R_8147576_SNP [dm3] 3R_12321854_SNP [dm6]	C	T	2.977e^-4	0.638	DOWNSTREAM tRNA:CR31432 INTERGENIC
2R	18516975	2R_18516975_SNP [dm3] 2R_22629470_SNP [dm6]	C	A	2.981e^-4	0.638	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516987	2R_18516987_SNP [dm3] 2R_22629482_SNP [dm6]	A	G	2.981e^-4	0.638	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2L	9069685	2L_9069685_SNP [dm3] 2L_9069685_SNP [dm6]	T	C	2.982e^-4	0.638	INTRON CG31708
3L	14833497	3L_14833497_SNP [dm3] 3L_14840397_SNP [dm6]	C	A	2.990e^-4	0.638	INTRON CG17839
3R	6641322	3R_6641322_SNP [dm3] 3R_10815600_SNP [dm6]	G	C	2.990e^-4	0.638	SYNONYMOUS_CODING CG4089 UPSTREAM CG14693	TF binding site mE1_TFBS_sens
3R	10777124	3R_10777124_SNP [dm3] 3R_14951402_SNP [dm6]	C	T	2.994e^-4	0.638	INTERGENIC
3R	16446774	3R_16446774_SNP [dm3] 3R_20621052_SNP [dm6]	T	A	3.003e^-4	0.638	UTR_3_PRIME CG5466 UPSTREAM H
3R	26662655	3R_26662655_SNP [dm3] 3R_30836933_SNP [dm6]	C	T	3.003e^-4	0.638	INTRON CG15544
2R	11444638	2R_11444638_SNP [dm3] 2R_15557133_SNP [dm6]	C	A	3.005e^-4	0.638	UPSTREAM CG12963 INTRON CG12963
2L	13352496	2L_13352496_SNP [dm3] 2L_13352496_SNP [dm6]	T	A	3.007e^-4	0.638	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10289179	2R_10289179_SNP [dm3] 2R_14401674_SNP [dm6]	C	T	3.012e^-4	0.638	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14844966	2L_14844966_INS [dm3] 2L_14844966_INS [dm6]	A	AA	3.012e^-4	0.638	DOWNSTREAM CG15279 INTERGENIC
3L	9200996	3L_9200996_SNP [dm3] 3L_9207896_SNP [dm6]	G	A	3.013e^-4	0.638	INTRON Slc45-1
X	6191761	X_6191761_SNP [dm3] X_6297728_SNP [dm6]	G	A	3.034e^-4	0.638	SYNONYMOUS_CODING CG3815	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4371802	3R_4371802_SNP [dm3] 3R_8546080_SNP [dm6]	C	A	3.038e^-4	0.638	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
2R	5767145	2R_5767145_SNP [dm3] 2R_9879640_SNP [dm6]	T	G	3.047e^-4	0.638	SPLICE_SITE_REGION Sec24AB INTRON Sec24AB	TF binding site mE1_TFBS_cad
3R	19998171	3R_19998171_SNP [dm3] 3R_24172449_SNP [dm6]	T	A	3.052e^-4	0.638	UPSTREAM CG13606 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11118278	3L_11118278_SNP [dm3] 3L_11125178_SNP [dm6]	A	G	3.059e^-4	0.638	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18584451	2L_18584451_SNP [dm3] 2L_18584451_SNP [dm6]	C	T	3.063e^-4	0.638	INTRON Pde11
3R	6889674	3R_6889674_SNP [dm3] 3R_11063952_SNP [dm6]	G	A	3.064e^-4	0.638	INTERGENIC
2R	12102313	2R_12102313_SNP [dm3] 2R_16214808_SNP [dm6]	A	G	3.074e^-4	0.638	INTRON mrj
2L	7995624	2L_7995624_SNP [dm3] 2L_7995624_SNP [dm6]	G	A	3.078e^-4	0.638	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9815778	3R_9815778_SNP [dm3] 3R_13990056_SNP [dm6]	A	C	3.089e^-4	0.638	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16872971	3R_16872971_SNP [dm3] 3R_21047249_SNP [dm6]	A	C	3.092e^-4	0.638	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
3R	4927280	3R_4927280_SNP [dm3] 3R_9101558_SNP [dm6]	C	T	3.092e^-4	0.638	INTRON pum
2L	6080881	2L_6080881_SNP [dm3] 2L_6080881_SNP [dm6]	T	C	3.099e^-4	0.638	DOWNSTREAM CR44773 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12347811	3L_12347811_SNP [dm3] 3L_12354711_SNP [dm6]	A	T	3.101e^-4	0.638	INTERGENIC
X	3342313	X_3342313_SNP [dm3] X_3448280_SNP [dm6]	C	T	3.116e^-4	0.638	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	8875399	3R_8875399_SNP [dm3] 3R_13049677_SNP [dm6]	T	A	3.121e^-4	0.638	DOWNSTREAM CG31157 INTRON CG7966
3R	18513121	3R_18513121_DEL [dm3] 3R_22687399_DEL [dm6]	CGAC	C	3.126e^-4	0.638	UTR_3_PRIME CG17625 UPSTREAM Gclm DOWNSTREAM wfs1	TF binding site BDTNP1_TFBS_dl
3R	18513183	3R_18513183_DEL [dm3] 3R_22687461_DEL [dm6]	TTTCAGTTTAAATAAATACA...	T	3.126e^-4	0.638	UPSTREAM Gclm DOWNSTREAM wfs1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24253793	3R_24253793_SNP [dm3] 3R_28428071_SNP [dm6]	G	C	3.127e^-4	0.638	INTRON beat-VI
3R	4864797	3R_4864797_SNP [dm3] 3R_9039075_SNP [dm6]	G	T	3.128e^-4	0.638	UPSTREAM hyx INTRON neur & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	8891351	2R_8891351_SNP [dm3] 2R_13003846_SNP [dm6]	C	A	3.130e^-4	0.638	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8579654	3L_8579654_SNP [dm3] 3L_8586554_SNP [dm6]	T	C	3.134e^-4	0.638	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3R	25314144	3R_25314144_SNP [dm3] 3R_29488422_SNP [dm6]	A	G	3.137e^-4	0.638	NON_SYNONYMOUS_CODING CG2321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9007737	3L_9007737_SNP [dm3] 3L_9014637_SNP [dm6]	T	C	3.147e^-4	0.638	SPLICE_SITE_REGION Doc2 INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18955560	3R_18955560_DEL [dm3] 3R_23129838_DEL [dm6]	ATCTGCGA	A	3.152e^-4	0.638	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7823383	2L_7823383_SNP [dm3] 2L_7823383_SNP [dm6]	A	T	3.154e^-4	0.638	INTRON CG7115
2L	1234895	2L_1234895_SNP [dm3] 2L_1234895_SNP [dm6]	A	G	3.155e^-4	0.638	INTERGENIC
X	4956570	X_4956570_SNP [dm3] X_5062537_SNP [dm6]	A	G	3.173e^-4	0.638	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4959699	X_4959699_SNP [dm3] X_5065666_SNP [dm6]	C	T	3.173e^-4	0.638	SYNONYMOUS_CODING ovo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3845674	2R_3845674_SNP [dm3] 2R_7958169_SNP [dm6]	C	T	3.185e^-4	0.638	UTR_3_PRIME CG2906 DOWNSTREAM CG2915	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16520847	2R_16520847_SNP [dm3] 2R_20633342_SNP [dm6]	A	G	3.196e^-4	0.638	UTR_5_PRIME Rcd6 DOWNSTREAM rig INTRON Rcd6
3L	9534523	3L_9534523_SNP [dm3] 3L_9541423_SNP [dm6]	C	T	3.208e^-4	0.638	DOWNSTREAM Ir67a INTERGENIC
3L	2656609	3L_2656609_SNP [dm3] 3L_2656609_SNP [dm6]	T	A	3.214e^-4	0.638	UTR_3_PRIME Fife
2L	14320605	2L_14320605_SNP [dm3] 2L_14320605_SNP [dm6]	T	C	3.219e^-4	0.638	SYNONYMOUS_CODING wb
3R	2637954	3R_2637954_SNP [dm3] 3R_6812232_SNP [dm6]	A	T	3.221e^-4	0.638	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13144704	2L_13144704_SNP [dm3] 2L_13144704_SNP [dm6]	T	G	3.222e^-4	0.638	INTERGENIC
2R	16018301	2R_16018301_SNP [dm3] 2R_20130796_SNP [dm6]	G	A	3.222e^-4	0.638	INTERGENIC
2R	7768597	2R_7768597_SNP [dm3] 2R_11881092_SNP [dm6]	T	C	3.222e^-4	0.638	SYNONYMOUS_CODING CG13185
3L	1559251	3L_1559251_SNP [dm3] 3L_1559251_SNP [dm6]	C	A	3.223e^-4	0.638	NON_SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8147286	3R_8147286_SNP [dm3] 3R_12321564_SNP [dm6]	G	A	3.224e^-4	0.638	DOWNSTREAM tRNA:CR31432 INTERGENIC
3R	10251481	3R_10251481_SNP [dm3] 3R_14425759_SNP [dm6]	G	T	3.237e^-4	0.638	INTRON cv-c
3L	11303953	3L_11303953_DEL [dm3] 3L_11310853_DEL [dm6]	TT	T	3.248e^-4	0.638	UPSTREAM CG7573 INTERGENIC
2R	3580784	2R_3580784_SNP [dm3] 2R_7693279_SNP [dm6]	T	C	3.251e^-4	0.638	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2440621	2L_2440621_INS [dm3] 2L_2440621_INS [dm6]	G	GTTTGG	3.254e^-4	0.638	INTRON dpp	regulatory region REDfly_CRMs
2R	15033317	2R_15033317_SNP [dm3] 2R_19145812_SNP [dm6]	T	A	3.255e^-4	0.638	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
3L	14913348	3L_14913348_SNP [dm3] 3L_14920248_SNP [dm6]	C	A	3.259e^-4	0.638	INTRON DCX-EMAP
2L	15792513	2L_15792513_SNP [dm3] 2L_15792513_SNP [dm6]	T	C	3.263e^-4	0.638	INTERGENIC
3L	19038446	3L_19038446_SNP [dm3] 3L_19045346_SNP [dm6]	T	G	3.263e^-4	0.638	UTR_5_PRIME nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	19038552	3L_19038552_SNP [dm3] 3L_19045452_SNP [dm6]	C	G	3.263e^-4	0.638	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	19038746	3L_19038746_INS [dm3] 3L_19045646_INS [dm6]	T	TTTTAATAT	3.263e^-4	0.638	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	19038976	3L_19038976_SNP [dm3] 3L_19045876_SNP [dm6]	C	A	3.263e^-4	0.638	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17043951	2R_17043951_DEL [dm3] 2R_21156446_DEL [dm6]	TG	T	3.268e^-4	0.638	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2L	19203055	2L_19203055_SNP [dm3] 2L_19203055_SNP [dm6]	T	A	3.277e^-4	0.638	INTRON drl	regulatory region REDfly_CRMs
3L	2998755	3L_2998755_SNP [dm3] 3L_2998755_SNP [dm6]	A	T	3.278e^-4	0.638	INTERGENIC
3R	8079405	3R_8079405_SNP [dm3] 3R_12253683_SNP [dm6]	T	C	3.291e^-4	0.638	UPSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	19949507	3L_19949507_SNP [dm3] 3L_19956407_SNP [dm6]	T	C	3.292e^-4	0.638	UPSTREAM CG42263 INTRON Ac76E
X	20814716	X_20814716_DEL [dm3] X_20943689_DEL [dm6]	TT	T	3.294e^-4	0.638	INTERGENIC
3L	7162406	3L_7162406_SNP [dm3] 3L_7169306_SNP [dm6]	G	T	3.296e^-4	0.638	INTRON Dscam2	TF binding site mE1_TFBS_HSA
2L	16837586	2L_16837586_SNP [dm3] 2L_16837586_SNP [dm6]	C	T	3.299e^-4	0.638	UPSTREAM SclB & 2 others INTERGENIC
2L	16837601	2L_16837601_SNP [dm3] 2L_16837601_SNP [dm6]	A	C	3.299e^-4	0.638	UPSTREAM SclB & 2 others INTERGENIC
2L	9053326	2L_9053326_SNP [dm3] 2L_9053326_SNP [dm6]	G	T	3.299e^-4	0.638	SYNONYMOUS_CODING CG31708
3R	23264089	3R_23264089_SNP [dm3] 3R_27438367_SNP [dm6]	A	G	3.300e^-4	0.638	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23264147	3R_23264147_INS [dm3] 3R_27438425_INS [dm6]	T	TAAAAAA	3.300e^-4	0.638	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23264152	3R_23264152_SNP [dm3] 3R_27438430_SNP [dm6]	C	A	3.300e^-4	0.638	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23264153	3R_23264153_SNP [dm3] 3R_27438431_SNP [dm6]	G	A	3.300e^-4	0.638	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23264155	3R_23264155_MNP [dm3] 3R_27438433_MNP [dm6]	TGATTG	AATAAT	3.300e^-4	0.638	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20147223	2L_20147223_SNP [dm3] 2L_20147223_SNP [dm6]	T	A	3.302e^-4	0.638	INTERGENIC
2R	5680407	2R_5680407_SNP [dm3] 2R_9792902_SNP [dm6]	T	A	3.307e^-4	0.638	UPSTREAM CG1698 INTRON CG1688
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	3.315e^-4	0.638	INTRON CG12207
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	3.315e^-4	0.638	INTRON CG12207
3L	788529	3L_788529_INS [dm3] 3L_788529_INS [dm6]	A	AA	3.320e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	5489233	3L_5489233_SNP [dm3] 3L_5496133_SNP [dm6]	A	G	3.327e^-4	0.638	INTERGENIC
3L	9767411	3L_9767411_SNP [dm3] 3L_9774311_SNP [dm6]	A	C	3.343e^-4	0.638	UTR_5_PRIME CG8177 INTRON CG8177
3R	4860755	3R_4860755_SNP [dm3] 3R_9035033_SNP [dm6]	T	G	3.347e^-4	0.638	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20124529	3R_20124529_SNP [dm3] 3R_24298807_SNP [dm6]	G	A	3.349e^-4	0.638	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	4107891	X_4107891_SNP [dm3] X_4213858_SNP [dm6]	T	C	3.351e^-4	0.638	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3R	4882323	3R_4882323_SNP [dm3] 3R_9056601_SNP [dm6]	G	A	3.353e^-4	0.638	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	14840296	2L_14840296_SNP [dm3] 2L_14840296_SNP [dm6]	C	T	3.354e^-4	0.638	DOWNSTREAM CR43805 INTERGENIC
3R	24582090	3R_24582090_SNP [dm3] 3R_28756368_SNP [dm6]	C	T	3.357e^-4	0.638	SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
X	14105448	X_14105448_SNP [dm3] X_14211415_SNP [dm6]	A	G	3.369e^-4	0.638	UTR_5_PRIME l_1_G0469 UPSTREAM l_1_G0007 INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
2L	10542936	2L_10542936_SNP [dm3] 2L_10542936_SNP [dm6]	A	G	3.370e^-4	0.638	EXON CR44618	TF binding site mE1_TFBS_cad
3R	18438601	3R_18438601_SNP [dm3] 3R_22612879_SNP [dm6]	G	A	3.371e^-4	0.638	SYNONYMOUS_CODING CG31156 UPSTREAM EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7085033	2L_7085033_SNP [dm3] 2L_7085033_SNP [dm6]	G	C	3.372e^-4	0.638	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13757900	2L_13757900_SNP [dm3] 2L_13757900_SNP [dm6]	A	C	3.380e^-4	0.638	INTRON TM9SF4
2R	1120889	2R_1120889_DEL [dm3] 2R_5233384_DEL [dm6]	AAGTG	A	3.380e^-4	0.638	INTRON Nipped-A	transposable element FlyBase
2R	19485130	2R_19485130_SNP [dm3] 2R_23597607_SNP [dm6]	T	C	3.380e^-4	0.638	SYNONYMOUS_CODING apt
2R	7501188	2R_7501188_SNP [dm3] 2R_11613683_SNP [dm6]	A	C	3.380e^-4	0.638	INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	7505784	2R_7505784_SNP [dm3] 2R_11618279_SNP [dm6]	T	C	3.380e^-4	0.638	SYNONYMOUS_CODING Egm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	7535686	2R_7535686_SNP [dm3] 2R_11648181_SNP [dm6]	A	T	3.380e^-4	0.638	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10283263	3L_10283263_SNP [dm3] 3L_10290163_SNP [dm6]	G	A	3.380e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12606729	3L_12606729_SNP [dm3] 3L_12613629_SNP [dm6]	G	C	3.380e^-4	0.638	INTRON caup
3L	2909185	3L_2909185_SNP [dm3] 3L_2909185_SNP [dm6]	T	A	3.380e^-4	0.638	INTRON Shab
3L	2909222	3L_2909222_SNP [dm3] 3L_2909222_SNP [dm6]	C	A	3.380e^-4	0.638	INTRON Shab
3R	17979695	3R_17979695_SNP [dm3] 3R_22153973_SNP [dm6]	A	T	3.380e^-4	0.638	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24388646	3R_24388646_SNP [dm3] 3R_28562924_SNP [dm6]	A	T	3.380e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24388713	3R_24388713_SNP [dm3] 3R_28562991_SNP [dm6]	T	C	3.380e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11119321	X_11119321_SNP [dm3] X_11225288_SNP [dm6]	T	C	3.380e^-4	0.638	INTRON CG44422
3L	5404817	3L_5404817_SNP [dm3] 3L_5411717_SNP [dm6]	T	G	3.381e^-4	0.638	INTERGENIC
3R	21050882	3R_21050882_SNP [dm3] 3R_25225160_SNP [dm6]	A	G	3.382e^-4	0.638	SYNONYMOUS_CODING Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21035657	3L_21035657_SNP [dm3] 3L_21042557_SNP [dm6]	G	T	3.386e^-4	0.638	INTRON siz
X	4168897	X_4168897_SNP [dm3] X_4274864_SNP [dm6]	T	C	3.396e^-4	0.638	DOWNSTREAM CR45483 INTERGENIC
X	4169199	X_4169199_SNP [dm3] X_4275166_SNP [dm6]	A	G	3.396e^-4	0.638	DOWNSTREAM CR45483 INTERGENIC
2R	18376689	2R_18376689_SNP [dm3] 2R_22489184_SNP [dm6]	T	G	3.398e^-4	0.638	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo
2L	13888391	2L_13888391_SNP [dm3] 2L_13888391_SNP [dm6]	G	A	3.402e^-4	0.638	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13888414	2L_13888414_SNP [dm3] 2L_13888414_SNP [dm6]	T	G	3.402e^-4	0.638	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13201513	X_13201513_SNP [dm3] X_13307480_SNP [dm6]	C	T	3.403e^-4	0.638	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
X	13201583	X_13201583_SNP [dm3] X_13307550_SNP [dm6]	C	T	3.403e^-4	0.638	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
X	13202601	X_13202601_SNP [dm3] X_13308568_SNP [dm6]	A	T	3.403e^-4	0.638	DOWNSTREAM CR45018 INTRON IP3K2
2L	6551640	2L_6551640_DEL [dm3] 2L_6551640_DEL [dm6]	TAAGTAA	T	3.404e^-4	0.638	UPSTREAM CR44776 INTERGENIC
X	4103094	X_4103094_SNP [dm3] X_4209061_SNP [dm6]	T	C	3.408e^-4	0.638	INTERGENIC
3R	25052694	3R_25052694_SNP [dm3] 3R_29226972_SNP [dm6]	C	T	3.411e^-4	0.638	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8868165	3R_8868165_SNP [dm3] 3R_13042443_SNP [dm6]	C	A	3.412e^-4	0.638	NON_SYNONYMOUS_CODING CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14152644	X_14152644_SNP [dm3] X_14258611_SNP [dm6]	T	C	3.417e^-4	0.638	DOWNSTREAM mud INTERGENIC
3R	9750708	3R_9750708_SNP [dm3] 3R_13924986_SNP [dm6]	A	T	3.428e^-4	0.638	INTERGENIC
2L	7830178	2L_7830178_SNP [dm3] 2L_7830178_SNP [dm6]	T	C	3.430e^-4	0.638	INTRON mts	TF binding site BDTNP1_TFBS_dl
3R	4929117	3R_4929117_SNP [dm3] 3R_9103395_SNP [dm6]	T	C	3.430e^-4	0.638	INTRON pum
X	12233890	X_12233890_DEL [dm3] X_12339857_DEL [dm6]	CC	C	3.441e^-4	0.638	INTERGENIC
3R	26073866	3R_26073866_SNP [dm3] 3R_30248144_SNP [dm6]	A	T	3.444e^-4	0.638	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13135909	X_13135909_INS [dm3] X_13241876_INS [dm6]	C	CTT	3.448e^-4	0.638	INTRON mew
X	13136582	X_13136582_SNP [dm3] X_13242549_SNP [dm6]	T	A	3.448e^-4	0.638	INTRON mew	TF binding site BDTNP1_TFBS_da
X	13136680	X_13136680_SNP [dm3] X_13242647_SNP [dm6]	T	A	3.448e^-4	0.638	INTRON mew	TF binding site BDTNP1_TFBS_da
X	13136698	X_13136698_SNP [dm3] X_13242665_SNP [dm6]	G	C	3.448e^-4	0.638	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	9201335	3L_9201335_SNP [dm3] 3L_9208235_SNP [dm6]	T	C	3.449e^-4	0.638	START_GAINED Slc45-1 UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
2L	7252412	2L_7252412_SNP [dm3] 2L_7252412_SNP [dm6]	C	T	3.451e^-4	0.638	SYNONYMOUS_CODING CG13786
3R	8128532	3R_8128532_SNP [dm3] 3R_12302810_SNP [dm6]	T	G	3.455e^-4	0.638	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
2R	11491284	2R_11491284_SNP [dm3] 2R_15603779_SNP [dm6]	G	C	3.459e^-4	0.638	INTERGENIC
2L	14544889	2L_14544889_SNP [dm3] 2L_14544889_SNP [dm6]	G	A	3.460e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4865992	3R_4865992_SNP [dm3] 3R_9040270_SNP [dm6]	C	T	3.461e^-4	0.638	SYNONYMOUS_CODING hyx UPSTREAM neur	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10045674	3R_10045674_SNP [dm3] 3R_14219952_SNP [dm6]	C	G	3.462e^-4	0.638	DOWNSTREAM CG33109 INTRON CG31326
3L	8874203	3L_8874203_SNP [dm3] 3L_8881103_SNP [dm6]	T	A	3.465e^-4	0.638	INTRON dally
X	21157285	X_21157285_SNP [dm3] X_21286258_SNP [dm6]	G	A	3.469e^-4	0.638	INTRON CG1494

By genomic position
Variant impact
Gene name

pc_MB_Alpha_Normal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results