DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.371e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2295 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4364892	2L_4364892_SNP [dm3] 2L_4364892_SNP [dm6]	A	G	6.695e^-7	0.69	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	15776481	X_15776481_SNP [dm3] X_15882448_SNP [dm6]	C	T	8.689e^-7	0.69	SYNONYMOUS_CODING tay
3L	12472751	3L_12472751_SNP [dm3] 3L_12479651_SNP [dm6]	A	C	1.688e^-6	0.69	INTRON CG10663
3R	16277317	3R_16277317_SNP [dm3] 3R_20451595_SNP [dm6]	C	G	1.801e^-6	0.69	INTRON Gfrl
3L	2030346	3L_2030346_SNP [dm3] 3L_2030346_SNP [dm6]	T	A	1.839e^-6	0.69	INTERGENIC
3L	11169230	3L_11169230_SNP [dm3] 3L_11176130_SNP [dm6]	T	C	4.482e^-6	0.755	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
2L	1562913	2L_1562913_SNP [dm3] 2L_1562913_SNP [dm6]	G	A	4.574e^-6	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	4748714	2L_4748714_SNP [dm3] 2L_4748714_SNP [dm6]	T	C	4.710e^-6	0.755	INTRON CG15630
3R	10139978	3R_10139978_SNP [dm3] 3R_14314256_SNP [dm6]	G	C	5.407e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
3R	14156978	3R_14156978_SNP [dm3] 3R_18331256_SNP [dm6]	C	G	5.726e^-6	0.755	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5886716	2L_5886716_SNP [dm3] 2L_5886716_SNP [dm6]	C	T	6.245e^-6	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2L	3520584	2L_3520584_SNP [dm3] 2L_3520584_SNP [dm6]	G	T	6.248e^-6	0.755	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2L	5619399	2L_5619399_SNP [dm3] 2L_5619399_SNP [dm6]	T	C	6.255e^-6	0.755	DOWNSTREAM CR44796 INTERGENIC
3R	10139973	3R_10139973_SNP [dm3] 3R_14314251_SNP [dm6]	A	T	6.709e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
3L	8667196	3L_8667196_SNP [dm3] 3L_8674096_SNP [dm6]	A	T	7.222e^-6	0.755	INTERGENIC	regulatory region REDfly_CRMs
3L	3119783	3L_3119783_SNP [dm3] 3L_3119783_SNP [dm6]	T	C	7.310e^-6	0.755	INTRON prominin-like
2L	5886702	2L_5886702_SNP [dm3] 2L_5886702_SNP [dm6]	G	A	8.769e^-6	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	23614154	3R_23614154_SNP [dm3] 3R_27788432_SNP [dm6]	C	A	8.836e^-6	0.755	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	8159185	2L_8159185_SNP [dm3] 2L_8159185_SNP [dm6]	C	A	9.049e^-6	0.755	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
3R	10139977	3R_10139977_SNP [dm3] 3R_14314255_SNP [dm6]	G	A	9.393e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
2R	9462833	2R_9462833_SNP [dm3] 2R_13575328_SNP [dm6]	A	T	1.061e^-5	0.755	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18052238	3R_18052238_SNP [dm3] 3R_22226516_SNP [dm6]	A	T	1.130e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1900894	2L_1900894_SNP [dm3] 2L_1900894_SNP [dm6]	T	A	1.264e^-5	0.755	INTRON CG7337
3L	8620006	3L_8620006_INS [dm3] 3L_8626906_INS [dm6]	A	ACTCTA	1.267e^-5	0.755	INTRON Zasp66
2L	8159111	2L_8159111_SNP [dm3] 2L_8159111_SNP [dm6]	A	T	1.270e^-5	0.755	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
2L	7915859	2L_7915859_SNP [dm3] 2L_7915859_SNP [dm6]	T	C	1.359e^-5	0.755	INTRON Snoo
3R	18052234	3R_18052234_SNP [dm3] 3R_22226512_SNP [dm6]	G	T	1.377e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13893745	2L_13893745_SNP [dm3] 2L_13893745_SNP [dm6]	C	T	1.412e^-5	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	10728640	2L_10728640_SNP [dm3] 2L_10728640_SNP [dm6]	G	A	1.426e^-5	0.755	SYNONYMOUS_CODING CG6431 UPSTREAM CG6443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21470420	X_21470420_SNP [dm3] X_21599393_SNP [dm6]	G	T	1.473e^-5	0.755	INTERGENIC
2L	11936935	2L_11936935_SNP [dm3] 2L_11936935_SNP [dm6]	T	A	1.494e^-5	0.755	INTRON Or33b
X	18910557	X_18910557_SNP [dm3] X_19016524_SNP [dm6]	T	C	1.504e^-5	0.755	INTRON CG43759
3L	5488942	3L_5488942_SNP [dm3] 3L_5495842_SNP [dm6]	G	C	1.539e^-5	0.755	INTERGENIC
2L	5886768	2L_5886768_SNP [dm3] 2L_5886768_SNP [dm6]	A	G	1.555e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2R	9461631	2R_9461631_SNP [dm3] 2R_13574126_SNP [dm6]	G	T	1.628e^-5	0.755	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12509528	3L_12509528_SNP [dm3] 3L_12516428_SNP [dm6]	C	A	1.656e^-5	0.755	INTRON tral	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16742382	3L_16742382_SNP [dm3] 3L_16749282_SNP [dm6]	G	T	1.657e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10007414	3L_10007414_SNP [dm3] 3L_10014314_SNP [dm6]	A	G	1.960e^-5	0.755	INTRON dpr6	TF binding site mE1_TFBS_kn
2L	14132401	2L_14132401_SNP [dm3] 2L_14132401_SNP [dm6]	A	G	2.029e^-5	0.755	INTERGENIC
2R	16413871	2R_16413871_SNP [dm3] 2R_20526366_SNP [dm6]	T	C	2.071e^-5	0.755	NON_SYNONYMOUS_CODING CG13422 DOWNSTREAM CR44650
2L	11936964	2L_11936964_SNP [dm3] 2L_11936964_SNP [dm6]	A	T	2.090e^-5	0.755	INTRON Or33b
2L	13893668	2L_13893668_SNP [dm3] 2L_13893668_SNP [dm6]	T	G	2.093e^-5	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3119991	3L_3119991_SNP [dm3] 3L_3119991_SNP [dm6]	A	G	2.093e^-5	0.755	INTRON prominin-like
3R	13323704	3R_13323704_SNP [dm3] 3R_17497982_SNP [dm6]	G	T	2.192e^-5	0.755	INTRON Dscam3
2R	9461643	2R_9461643_SNP [dm3] 2R_13574138_SNP [dm6]	C	T	2.266e^-5	0.755	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5619400	2L_5619400_SNP [dm3] 2L_5619400_SNP [dm6]	T	C	2.273e^-5	0.755	DOWNSTREAM CR44796 INTERGENIC
2L	10729750	2L_10729750_SNP [dm3] 2L_10729750_SNP [dm6]	G	T	2.310e^-5	0.755	NON_SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10729780	2L_10729780_SNP [dm3] 2L_10729780_SNP [dm6]	G	C	2.310e^-5	0.755	NON_SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11936922	2L_11936922_DEL [dm3] 2L_11936922_DEL [dm6]	ATA	A	2.349e^-5	0.755	INTRON Or33b
2L	4420455	2L_4420455_SNP [dm3] 2L_4420455_SNP [dm6]	T	A	2.407e^-5	0.755	INTRON CG15431
X	3448434	X_3448434_SNP [dm3] X_3554401_SNP [dm6]	G	T	2.508e^-5	0.755	INTRON CG32791	TF binding site mE1_TFBS_HSA
X	19142404	X_19142404_SNP [dm3] X_19248371_SNP [dm6]	A	G	2.713e^-5	0.755	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1584903	3L_1584903_SNP [dm3] 3L_1584903_SNP [dm6]	T	C	2.721e^-5	0.755	INTRON CG13917
X	18917572	X_18917572_SNP [dm3] X_19023539_SNP [dm6]	C	T	2.723e^-5	0.755	INTRON CG43759
3R	21115270	3R_21115270_SNP [dm3] 3R_25289548_SNP [dm6]	A	T	2.726e^-5	0.755	UPSTREAM CG11893 DOWNSTREAM CG13658 INTERGENIC
3L	8693902	3L_8693902_SNP [dm3] 3L_8700802_SNP [dm6]	T	C	2.756e^-5	0.755	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	13698923	2L_13698923_SNP [dm3] 2L_13698923_SNP [dm6]	A	G	2.756e^-5	0.755	INTRON CG31814
2L	7002225	2L_7002225_SNP [dm3] 2L_7002225_SNP [dm6]	T	C	2.764e^-5	0.755	INTRON uif
X	18915707	X_18915707_SNP [dm3] X_19021674_SNP [dm6]	G	T	2.795e^-5	0.755	INTRON CG43759
2L	740788	2L_740788_SNP [dm3] 2L_740788_SNP [dm6]	A	T	2.846e^-5	0.755	INTRON Eaat2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8153042	2L_8153042_SNP [dm3] 2L_8153042_SNP [dm6]	T	G	2.883e^-5	0.755	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	2.899e^-5	0.755	INTRON uif
2L	19972934	2L_19972934_SNP [dm3] 2L_19972934_SNP [dm6]	T	G	3.037e^-5	0.755	INTRON CG43861
X	14751464	X_14751464_SNP [dm3] X_14857431_SNP [dm6]	C	A	3.056e^-5	0.755	INTRON Flo2
2L	1913023	2L_1913023_INS [dm3] 2L_1913023_INS [dm6]	G	GTA	3.102e^-5	0.755	INTRON CG7337
2L	1913026	2L_1913026_DEL [dm3] 2L_1913026_DEL [dm6]	TTACTCA	T	3.102e^-5	0.755	INTRON CG7337
X	18909238	X_18909238_SNP [dm3] X_19015205_SNP [dm6]	C	T	3.120e^-5	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5887284	2L_5887284_SNP [dm3] 2L_5887284_SNP [dm6]	T	G	3.177e^-5	0.755	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3R	15130718	3R_15130718_SNP [dm3] 3R_19304996_SNP [dm6]	A	G	3.208e^-5	0.755	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	3067516	3R_3067516_SNP [dm3] 3R_7241794_SNP [dm6]	G	A	3.244e^-5	0.755	UTR_5_PRIME CG14607 DOWNSTREAM CG14608
2R	12774793	2R_12774793_SNP [dm3] 2R_16887288_SNP [dm6]	G	A	3.288e^-5	0.755	INTRON CG8910
3R	6115838	3R_6115838_SNP [dm3] 3R_10290116_SNP [dm6]	G	C	3.323e^-5	0.755	UPSTREAM CG43143 INTRON CG43143
3L	5955059	3L_5955059_SNP [dm3] 3L_5961959_SNP [dm6]	A	T	3.384e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18052263	3R_18052263_SNP [dm3] 3R_22226541_SNP [dm6]	T	A	3.534e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11144361	2R_11144361_SNP [dm3] 2R_15256856_SNP [dm6]	G	T	3.543e^-5	0.755	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7915843	2L_7915843_SNP [dm3] 2L_7915843_SNP [dm6]	G	A	3.554e^-5	0.755	INTRON Snoo
2L	1559152	2L_1559152_SNP [dm3] 2L_1559152_SNP [dm6]	A	G	3.639e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_HSA
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	3.648e^-5	0.755	INTERGENIC
2L	1563970	2L_1563970_SNP [dm3] 2L_1563970_SNP [dm6]	A	G	3.650e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	4452958	2L_4452958_SNP [dm3] 2L_4452958_SNP [dm6]	A	G	3.650e^-5	0.755	START_GAINED CG15439 UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5886808	2L_5886808_SNP [dm3] 2L_5886808_SNP [dm6]	A	T	3.682e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2L	5886876	2L_5886876_SNP [dm3] 2L_5886876_SNP [dm6]	C	T	3.684e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	20598390	3R_20598390_SNP [dm3] 3R_24772668_SNP [dm6]	G	A	3.780e^-5	0.755	INTRON CG42331
X	5327578	X_5327578_SNP [dm3] X_5433545_SNP [dm6]	A	C	3.782e^-5	0.755	EXON CR44471	TF binding site mE1_TFBS_Trl
3L	6292485	3L_6292485_SNP [dm3] 3L_6299385_SNP [dm6]	T	C	3.849e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8021614	3L_8021614_SNP [dm3] 3L_8028514_SNP [dm6]	T	C	3.894e^-5	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
X	19142228	X_19142228_INS [dm3] X_19248195_INS [dm6]	T	TGTAT	3.943e^-5	0.755	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7917763	2L_7917763_DEL [dm3] 2L_7917763_DEL [dm6]	GCG	G	3.970e^-5	0.755	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7915846	2L_7915846_SNP [dm3] 2L_7915846_SNP [dm6]	A	T	4.027e^-5	0.755	INTRON Snoo
2L	2761176	2L_2761176_SNP [dm3] 2L_2761176_SNP [dm6]	A	C	4.028e^-5	0.755	SYNONYMOUS_CODING Trn-SR	TF binding site mE1_TFBS_cad
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	4.096e^-5	0.755	INTERGENIC
2R	3457569	2R_3457569_SNP [dm3] 2R_7570064_SNP [dm6]	G	A	4.105e^-5	0.755	NON_SYNONYMOUS_CODING Vps13
3R	17862944	3R_17862944_SNP [dm3] 3R_22037222_SNP [dm6]	G	T	4.126e^-5	0.755	DOWNSTREAM scaRNA:MeU5-G38 INTRON pit
2L	7916584	2L_7916584_DEL [dm3] 2L_7916584_DEL [dm6]	TT	T	4.158e^-5	0.755	INTRON Snoo
2L	12681990	2L_12681990_SNP [dm3] 2L_12681990_SNP [dm6]	A	C	4.182e^-5	0.755	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	17862987	3R_17862987_SNP [dm3] 3R_22037265_SNP [dm6]	G	A	4.258e^-5	0.755	SYNONYMOUS_CODING pit DOWNSTREAM scaRNA:MeU5-G38
3L	5711972	3L_5711972_SNP [dm3] 3L_5718872_SNP [dm6]	G	T	4.356e^-5	0.755	INTRON sif
3R	18052205	3R_18052205_SNP [dm3] 3R_22226483_SNP [dm6]	G	T	4.376e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1567562	2L_1567562_SNP [dm3] 2L_1567562_SNP [dm6]	T	G	4.468e^-5	0.755	INTRON haf
2L	4754632	2L_4754632_SNP [dm3] 2L_4754632_SNP [dm6]	T	C	4.505e^-5	0.755	INTRON CG15630
3R	17862902	3R_17862902_SNP [dm3] 3R_22037180_SNP [dm6]	A	T	4.526e^-5	0.755	SYNONYMOUS_CODING pit DOWNSTREAM scaRNA:MeU5-G38
3R	17862942	3R_17862942_SNP [dm3] 3R_22037220_SNP [dm6]	T	A	4.634e^-5	0.755	DOWNSTREAM scaRNA:MeU5-G38 INTRON pit
3L	6292482	3L_6292482_SNP [dm3] 3L_6299382_SNP [dm6]	G	T	4.659e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21769226	3L_21769226_SNP [dm3] 3L_21776126_SNP [dm6]	G	T	4.726e^-5	0.755	INTRON CG42689 & 1 other	TF binding site mE1_TFBS_cad
3R	13826197	3R_13826197_SNP [dm3] 3R_18000475_SNP [dm6]	G	A	4.731e^-5	0.755	INTRON cpo
X	15112975	X_15112975_MNP [dm3] X_15218942_MNP [dm6]	GCA	ATG	4.737e^-5	0.755	INTERGENIC
2R	17100876	2R_17100876_SNP [dm3] 2R_21213371_SNP [dm6]	C	G	4.815e^-5	0.755	NON_SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245	TF binding site mE1_TFBS_sens
X	19760503	X_19760503_SNP [dm3] X_19866470_SNP [dm6]	T	C	4.863e^-5	0.755	UPSTREAM CG15618 INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	14026961	X_14026961_SNP [dm3] X_14132928_SNP [dm6]	G	A	4.986e^-5	0.755	INTERGENIC
2R	16356706	2R_16356706_SNP [dm3] 2R_20469201_SNP [dm6]	G	T	5.018e^-5	0.755	INTRON CG12484
X	19760459	X_19760459_SNP [dm3] X_19866426_SNP [dm6]	A	G	5.029e^-5	0.755	UPSTREAM CG15618 INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9595658	2R_9595658_SNP [dm3] 2R_13708153_SNP [dm6]	C	A	5.097e^-5	0.755	INTRON fas
3R	23369806	3R_23369806_SNP [dm3] 3R_27544084_SNP [dm6]	C	A	5.103e^-5	0.755	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
X	15112956	X_15112956_SNP [dm3] X_15218923_SNP [dm6]	C	T	5.114e^-5	0.755	INTERGENIC
3L	19346499	3L_19346499_SNP [dm3] 3L_19353399_SNP [dm6]	T	A	5.268e^-5	0.755	INTRON CG32206
X	19142246	X_19142246_INS [dm3] X_19248213_INS [dm6]	A	AA	5.274e^-5	0.755	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9400103	3L_9400103_SNP [dm3] 3L_9407003_SNP [dm6]	C	T	5.291e^-5	0.755	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B & 1 other
X	19136915	X_19136915_SNP [dm3] X_19242882_SNP [dm6]	C	T	5.336e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136916	X_19136916_SNP [dm3] X_19242883_SNP [dm6]	G	A	5.336e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136900	X_19136900_DEL [dm3] X_19242867_DEL [dm6]	AGGT	A	5.415e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136905	X_19136905_SNP [dm3] X_19242872_SNP [dm6]	T	A	5.415e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9456274	2R_9456274_SNP [dm3] 2R_13568769_SNP [dm6]	A	G	5.502e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
3R	5102321	3R_5102321_SNP [dm3] 3R_9276599_SNP [dm6]	C	A	5.554e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19136908	X_19136908_SNP [dm3] X_19242875_SNP [dm6]	C	T	5.624e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136907	X_19136907_SNP [dm3] X_19242874_SNP [dm6]	C	G	5.648e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4377616	2L_4377616_SNP [dm3] 2L_4377616_SNP [dm6]	A	T	5.676e^-5	0.755	INTRON Traf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10167870	3L_10167870_SNP [dm3] 3L_10174770_SNP [dm6]	C	T	5.697e^-5	0.755	INTRON dpr10
X	13149660	X_13149660_SNP [dm3] X_13255627_SNP [dm6]	C	A	5.769e^-5	0.755	INTRON mew
X	5874779	X_5874779_SNP [dm3] X_5980746_SNP [dm6]	C	T	5.845e^-5	0.755	INTRON Grip
2L	7916455	2L_7916455_SNP [dm3] 2L_7916455_SNP [dm6]	T	A	5.851e^-5	0.755	INTRON Snoo
2L	4453798	2L_4453798_SNP [dm3] 2L_4453798_SNP [dm6]	A	T	5.934e^-5	0.755	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16257103	3R_16257103_SNP [dm3] 3R_20431381_SNP [dm6]	G	A	5.992e^-5	0.755	INTRON Gfrl
2L	4452979	2L_4452979_SNP [dm3] 2L_4452979_SNP [dm6]	G	T	6.041e^-5	0.755	UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4451728	2L_4451728_SNP [dm3] 2L_4451728_SNP [dm6]	A	G	6.045e^-5	0.755	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16731717	3L_16731717_SNP [dm3] 3L_16738617_SNP [dm6]	T	A	6.052e^-5	0.755	INTRON CG9701	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15112959	X_15112959_SNP [dm3] X_15218926_SNP [dm6]	G	A	6.092e^-5	0.755	INTERGENIC
3R	3067359	3R_3067359_SNP [dm3] 3R_7241637_SNP [dm6]	C	T	6.143e^-5	0.755	UPSTREAM CG14607 DOWNSTREAM CG14608 INTERGENIC
3R	21185195	3R_21185195_SNP [dm3] 3R_25359473_SNP [dm6]	C	T	6.161e^-5	0.755	SYNONYMOUS_CODING CG11913 INTRON Fur1	TF binding site mE1_TFBS_sens
2L	11498026	2L_11498026_SNP [dm3] 2L_11498026_SNP [dm6]	A	G	6.194e^-5	0.755	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3099121	2L_3099121_SNP [dm3] 2L_3099121_SNP [dm6]	T	A	6.213e^-5	0.755	INTRON toc
3R	21376239	3R_21376239_DEL [dm3] 3R_25550517_DEL [dm6]	TT	T	6.243e^-5	0.755	INTRON msi
2R	11080697	2R_11080697_SNP [dm3] 2R_15193192_SNP [dm6]	T	G	6.323e^-5	0.755	NON_SYNONYMOUS_CODING Sfp51E DOWNSTREAM CG43829
X	18917489	X_18917489_SNP [dm3] X_19023456_SNP [dm6]	C	T	6.332e^-5	0.755	INTRON CG43759
2L	5886762	2L_5886762_SNP [dm3] 2L_5886762_SNP [dm6]	C	T	6.426e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
X	19136910	X_19136910_SNP [dm3] X_19242877_SNP [dm6]	A	T	6.437e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14276326	2L_14276326_SNP [dm3] 2L_14276326_SNP [dm6]	T	G	6.483e^-5	0.755	UPSTREAM CG32971 INTRON wb & 1 other
3L	8021643	3L_8021643_DEL [dm3] 3L_8028543_DEL [dm6]	AC	A	6.544e^-5	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2R	9461625	2R_9461625_SNP [dm3] 2R_13574120_SNP [dm6]	G	A	6.569e^-5	0.755	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6292518	3L_6292518_SNP [dm3] 3L_6299418_SNP [dm6]	T	A	6.610e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5886627	2L_5886627_SNP [dm3] 2L_5886627_SNP [dm6]	T	C	6.671e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
3L	6549078	3L_6549078_SNP [dm3] 3L_6555978_SNP [dm6]	A	G	6.760e^-5	0.755	INTRON CG18769	TF binding site mE1_TFBS_inv
X	4434705	X_4434705_SNP [dm3] X_4540672_SNP [dm6]	T	A	6.779e^-5	0.755	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	11256263	2R_11256263_SNP [dm3] 2R_15368758_SNP [dm6]	A	G	6.781e^-5	0.755	DOWNSTREAM unc-5 INTRON Pms2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11256522	2R_11256522_SNP [dm3] 2R_15369017_SNP [dm6]	A	T	6.781e^-5	0.755	SYNONYMOUS_CODING Pms2 DOWNSTREAM unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11241942	3L_11241942_SNP [dm3] 3L_11248842_SNP [dm6]	C	T	6.802e^-5	0.755	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
2R	17293389	2R_17293389_SNP [dm3] 2R_21405884_SNP [dm6]	G	A	6.828e^-5	0.755	INTRON Sdc
2L	8804021	2L_8804021_SNP [dm3] 2L_8804021_SNP [dm6]	G	T	6.846e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15537025	X_15537025_SNP [dm3] X_15642992_SNP [dm6]	G	T	6.875e^-5	0.755	UPSTREAM CR44893 INTERGENIC
2R	6286238	2R_6286238_INS [dm3] 2R_10398733_INS [dm6]	T	TTTT	6.877e^-5	0.755	INTRON CG42732
3R	15137962	3R_15137962_SNP [dm3] 3R_19312240_SNP [dm6]	G	A	6.923e^-5	0.755	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9595665	2R_9595665_SNP [dm3] 2R_13708160_SNP [dm6]	C	G	6.982e^-5	0.755	INTRON fas
X	3627180	X_3627180_SNP [dm3] X_3733147_SNP [dm6]	C	T	7.000e^-5	0.755	INTRON tlk
2R	11440304	2R_11440304_SNP [dm3] 2R_15552799_SNP [dm6]	A	G	7.012e^-5	0.755	INTERGENIC
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	7.045e^-5	0.755	INTERGENIC
X	15429829	X_15429829_SNP [dm3] X_15535796_SNP [dm6]	G	C	7.048e^-5	0.755	INTRON Ac13E
2L	3759158	2L_3759158_SNP [dm3] 2L_3759158_SNP [dm6]	T	G	7.105e^-5	0.755	SPLICE_SITE_REGION CG43707 UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
2L	2516609	2L_2516609_SNP [dm3] 2L_2516609_SNP [dm6]	A	G	7.119e^-5	0.755	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11266399	2R_11266399_SNP [dm3] 2R_15378894_SNP [dm6]	G	T	7.187e^-5	0.755	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6674192	X_6674192_SNP [dm3] X_6780159_SNP [dm6]	G	A	7.232e^-5	0.755	UPSTREAM shf DOWNSTREAM C3G INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4452990	2L_4452990_SNP [dm3] 2L_4452990_SNP [dm6]	C	A	7.243e^-5	0.755	UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4431388	X_4431388_SNP [dm3] X_4537355_SNP [dm6]	G	A	7.303e^-5	0.755	SYNONYMOUS_CODING rb INTRON CR32773
2L	10928323	2L_10928323_SNP [dm3] 2L_10928323_SNP [dm6]	A	C	7.307e^-5	0.755	INTRON dpr2
2R	6286246	2R_6286246_INS [dm3] 2R_10398741_INS [dm6]	G	GCACAAGAT	7.316e^-5	0.755	INTRON CG42732
2L	1569054	2L_1569054_SNP [dm3] 2L_1569054_SNP [dm6]	G	A	7.336e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_HSA
3R	25477191	3R_25477191_INS [dm3] 3R_29651469_INS [dm6]	G	GGGCGG	7.370e^-5	0.755	INTRON Dop1R2
2L	10555502	2L_10555502_SNP [dm3] 2L_10555502_SNP [dm6]	G	A	7.371e^-5	0.755	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1901191	2L_1901191_INS [dm3] 2L_1901191_INS [dm6]	G	GCCACTGT	7.435e^-5	0.755	INTRON CG7337
3R	18052231	3R_18052231_SNP [dm3] 3R_22226509_SNP [dm6]	T	G	7.436e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17608201	2R_17608201_SNP [dm3] 2R_21720696_SNP [dm6]	A	C	7.510e^-5	0.755	UPSTREAM LBR & 1 other INTRON LBR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	15840409	3L_15840409_SNP [dm3] 3L_15847309_SNP [dm6]	C	T	7.530e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8154272	2L_8154272_SNP [dm3] 2L_8154272_SNP [dm6]	T	A	7.593e^-5	0.755	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad
2R	11265027	2R_11265027_SNP [dm3] 2R_15377522_SNP [dm6]	C	T	7.599e^-5	0.755	NON_SYNONYMOUS_CODING dup	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5887152	2L_5887152_SNP [dm3] 2L_5887152_SNP [dm6]	G	C	7.618e^-5	0.755	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other INTERGENIC
2R	6286245	2R_6286245_SNP [dm3] 2R_10398740_SNP [dm6]	T	G	7.643e^-5	0.755	INTRON CG42732
3L	7344704	3L_7344704_SNP [dm3] 3L_7351604_SNP [dm6]	T	C	7.646e^-5	0.755	SYNONYMOUS_CODING qm	TF binding site mE1_TFBS_sens
3R	19850897	3R_19850897_SNP [dm3] 3R_24025175_SNP [dm6]	C	T	7.646e^-5	0.755	INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13857505	2R_13857505_SNP [dm3] 2R_17970000_SNP [dm6]	A	G	7.684e^-5	0.755	INTERGENIC
X	3356174	X_3356174_SNP [dm3] X_3462141_SNP [dm6]	A	T	7.768e^-5	0.755	NON_SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
X	15137804	X_15137804_SNP [dm3] X_15243771_SNP [dm6]	T	A	7.770e^-5	0.755	DOWNSTREAM PPYR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5374616	X_5374616_SNP [dm3] X_5480583_SNP [dm6]	C	T	7.840e^-5	0.755	INTRON SPR
2R	3463822	2R_3463822_SNP [dm3] 2R_7576317_SNP [dm6]	C	T	7.855e^-5	0.755	SYNONYMOUS_CODING Vps13
3L	11144419	3L_11144419_SNP [dm3] 3L_11151319_SNP [dm6]	C	T	7.860e^-5	0.755	START_GAINED CG32082 UTR_5_PRIME CG32082 UPSTREAM CG6216
X	19136987	X_19136987_INS [dm3] X_19242954_INS [dm6]	A	AGTG	7.885e^-5	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5030354	3R_5030354_SNP [dm3] 3R_9204632_SNP [dm6]	G	A	7.917e^-5	0.755	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8007274	2L_8007274_SNP [dm3] 2L_8007274_SNP [dm6]	G	T	7.944e^-5	0.755	UPSTREAM Spn28Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6549081	3L_6549081_SNP [dm3] 3L_6555981_SNP [dm6]	G	A	8.034e^-5	0.755	INTRON CG18769	TF binding site mE1_TFBS_inv
2L	1784057	2L_1784057_SNP [dm3] 2L_1784057_SNP [dm6]	G	T	8.052e^-5	0.755	UPSTREAM Gr22e INTERGENIC	TF binding site mE1_TFBS_cad
2L	8311498	2L_8311498_SNP [dm3] 2L_8311498_SNP [dm6]	A	G	8.064e^-5	0.755	START_GAINED CG7806 UTR_5_PRIME CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	4735798	2L_4735798_SNP [dm3] 2L_4735798_SNP [dm6]	A	G	8.082e^-5	0.755	INTRON CG15630
2R	19504624	2R_19504624_SNP [dm3] 2R_23617101_SNP [dm6]	A	C	8.096e^-5	0.755	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	25678061	3R_25678061_SNP [dm3] 3R_29852339_SNP [dm6]	C	T	8.164e^-5	0.755	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8154463	2L_8154463_SNP [dm3] 2L_8154463_SNP [dm6]	G	C	8.203e^-5	0.755	UTR_3_PRIME CG43394 INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad
3R	25060747	3R_25060747_SNP [dm3] 3R_29235025_SNP [dm6]	C	G	8.219e^-5	0.755	UTR_3_PRIME CG15817 DOWNSTREAM CG11951
3L	21617253	3L_21617253_SNP [dm3] 3L_21624153_SNP [dm6]	T	C	8.281e^-5	0.755	INTRON CG7166
2L	1563327	2L_1563327_SNP [dm3] 2L_1563327_SNP [dm6]	C	A	8.289e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4309627	2R_4309627_SNP [dm3] 2R_8422122_SNP [dm6]	T	C	8.344e^-5	0.755	INTRON CSN7
2R	12776747	2R_12776747_SNP [dm3] 2R_16889242_SNP [dm6]	T	C	8.396e^-5	0.755	INTRON CG8910
X	15137971	X_15137971_SNP [dm3] X_15243938_SNP [dm6]	A	G	8.475e^-5	0.755	SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
3R	27334265	3R_27334265_DEL [dm3] 3R_31508543_DEL [dm6]	GTT	G	8.548e^-5	0.755	INTERGENIC
3R	24876419	3R_24876419_SNP [dm3] 3R_29050697_SNP [dm6]	T	G	8.566e^-5	0.755	UTR_3_PRIME CG11837 UPSTREAM CG11841
3R	3067389	3R_3067389_SNP [dm3] 3R_7241667_SNP [dm6]	G	T	8.593e^-5	0.755	UPSTREAM CG14607 DOWNSTREAM CG14608 INTERGENIC
3L	4968780	3L_4968780_SNP [dm3] 3L_4968780_SNP [dm6]	C	T	8.598e^-5	0.755	INTRON Con
2L	4313053	2L_4313053_SNP [dm3] 2L_4313053_SNP [dm6]	G	T	8.627e^-5	0.755	INTRON tutl
2L	1837667	2L_1837667_SNP [dm3] 2L_1837667_SNP [dm6]	C	G	8.694e^-5	0.755	INTRON wry
3R	13327769	3R_13327769_SNP [dm3] 3R_17502047_SNP [dm6]	G	C	8.726e^-5	0.755	INTRON Dscam3
3R	26067821	3R_26067821_DEL [dm3] 3R_30242099_DEL [dm6]	GCTTCAAG	G	8.751e^-5	0.755	INTRON CG9737	TF binding site mE1_TFBS_HSA
2L	11497965	2L_11497965_SNP [dm3] 2L_11497965_SNP [dm6]	T	G	8.929e^-5	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	16161654	X_16161654_SNP [dm3] X_16267621_SNP [dm6]	G	A	8.932e^-5	0.755	SYNONYMOUS_CODING kat80
3L	18560422	3L_18560422_SNP [dm3] 3L_18567322_SNP [dm6]	A	G	8.984e^-5	0.755	INTRON AstC-R1
X	5937840	X_5937840_SNP [dm3] X_6043807_SNP [dm6]	C	T	8.986e^-5	0.755	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18906112	X_18906112_SNP [dm3] X_19012079_SNP [dm6]	C	A	8.992e^-5	0.755	SYNONYMOUS_CODING CG43759	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4332420	2L_4332420_SNP [dm3] 2L_4332420_SNP [dm6]	G	T	9.029e^-5	0.755	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19760677	X_19760677_SNP [dm3] X_19866644_SNP [dm6]	G	C	9.048e^-5	0.755	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	972833	2L_972833_SNP [dm3] 2L_972833_SNP [dm6]	A	T	9.170e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20787696	3R_20787696_SNP [dm3] 3R_24961974_SNP [dm6]	G	T	9.180e^-5	0.755	INTERGENIC
2R	16356748	2R_16356748_SNP [dm3] 2R_20469243_SNP [dm6]	A	C	9.230e^-5	0.755	INTRON CG12484
X	5883568	X_5883568_SNP [dm3] X_5989535_SNP [dm6]	T	A	9.259e^-5	0.755	UTR_5_PRIME CG5966 INTRON CG5966
X	18916425	X_18916425_SNP [dm3] X_19022392_SNP [dm6]	C	T	9.279e^-5	0.755	INTRON CG43759	TF binding site mE1_TFBS_chinmo
2L	3817642	2L_3817642_SNP [dm3] 2L_3817642_SNP [dm6]	T	C	9.309e^-5	0.755	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9366308	3L_9366308_SNP [dm3] 3L_9373208_SNP [dm6]	A	G	9.414e^-5	0.755	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8161127	2L_8161127_SNP [dm3] 2L_8161127_SNP [dm6]	G	A	9.418e^-5	0.755	NON_SYNONYMOUS_CODING Rbsn-5 DOWNSTREAM CG8498	TF binding site mE1_TFBS_sens
3R	13794003	3R_13794003_SNP [dm3] 3R_17968281_SNP [dm6]	C	A	9.519e^-5	0.755	INTRON cpo
X	22224891	X_22224891_SNP [dm3] X_22823055_SNP [dm6]	G	T	9.651e^-5	0.755	INTERGENIC	transposable element FlyBase
3L	10007869	3L_10007869_SNP [dm3] 3L_10014769_SNP [dm6]	G	A	9.699e^-5	0.755	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	15113017	X_15113017_DEL [dm3] X_15218984_DEL [dm6]	ACATAACATATTTTAAGCA...	A	9.740e^-5	0.755	INTERGENIC
2R	16665687	2R_16665687_SNP [dm3] 2R_20778182_SNP [dm6]	G	A	9.769e^-5	0.755	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2L	11497952	2L_11497952_SNP [dm3] 2L_11497952_SNP [dm6]	G	A	9.841e^-5	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	703242	3L_703242_SNP [dm3] 3L_703242_SNP [dm6]	A	G	9.855e^-5	0.755	INTERGENIC
2L	3520636	2L_3520636_SNP [dm3] 2L_3520636_SNP [dm6]	A	T	9.911e^-5	0.755	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2L	671203	2L_671203_SNP [dm3] 2L_671203_SNP [dm6]	G	T	9.916e^-5	0.755	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18912012	X_18912012_SNP [dm3] X_19017979_SNP [dm6]	G	A	9.924e^-5	0.755	INTRON CG43759
2L	4452991	2L_4452991_SNP [dm3] 2L_4452991_SNP [dm6]	T	C	9.961e^-5	0.755	UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8007275	2L_8007275_SNP [dm3] 2L_8007275_SNP [dm6]	A	G	1.005e^-4	0.755	UPSTREAM Spn28Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15130772	3R_15130772_SNP [dm3] 3R_19305050_SNP [dm6]	T	G	1.019e^-4	0.755	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4968755	3L_4968755_SNP [dm3] 3L_4968755_SNP [dm6]	G	A	1.026e^-4	0.755	INTRON Con
2L	6845946	2L_6845946_SNP [dm3] 2L_6845946_SNP [dm6]	T	C	1.035e^-4	0.755	INTERGENIC
3R	18720792	3R_18720792_SNP [dm3] 3R_22895070_SNP [dm6]	A	T	1.039e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26880549	3R_26880549_SNP [dm3] 3R_31054827_SNP [dm6]	A	G	1.046e^-4	0.755	UTR_3_PRIME dco UPSTREAM l_3_03670 DOWNSTREAM dco	TF binding site BDTNP1_TFBS_dl
3L	9907743	3L_9907743_INS [dm3] 3L_9914643_INS [dm6]	T	TG	1.050e^-4	0.755	INTRON CG34356
3L	9907745	3L_9907745_INS [dm3] 3L_9914645_INS [dm6]	C	CTTT	1.050e^-4	0.755	INTRON CG34356
2L	1562912	2L_1562912_SNP [dm3] 2L_1562912_SNP [dm6]	G	A	1.053e^-4	0.755	INTRON haf	TF binding site mE1_TFBS_inv
X	19142390	X_19142390_SNP [dm3] X_19248357_SNP [dm6]	T	C	1.066e^-4	0.755	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7002230	2L_7002230_SNP [dm3] 2L_7002230_SNP [dm6]	C	A	1.073e^-4	0.755	INTRON uif
3R	17862926	3R_17862926_SNP [dm3] 3R_22037204_SNP [dm6]	G	A	1.074e^-4	0.755	DOWNSTREAM scaRNA:MeU5-G38 INTRON pit
2R	9456263	2R_9456263_SNP [dm3] 2R_13568758_SNP [dm6]	A	G	1.077e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
X	3624263	X_3624263_SNP [dm3] X_3730230_SNP [dm6]	G	A	1.080e^-4	0.755	INTRON tlk
2R	12776737	2R_12776737_SNP [dm3] 2R_16889232_SNP [dm6]	T	G	1.081e^-4	0.755	INTRON CG8910
X	17000463	X_17000463_SNP [dm3] X_17106430_SNP [dm6]	T	C	1.083e^-4	0.755	UPSTREAM Arpc3B INTERGENIC	transposable element FlyBase
3R	7878430	3R_7878430_SNP [dm3] 3R_12052708_SNP [dm6]	C	A	1.085e^-4	0.755	INTERGENIC
3L	12586028	3L_12586028_SNP [dm3] 3L_12592928_SNP [dm6]	A	G	1.086e^-4	0.755	INTRON ara	TF binding site mE1_TFBS_HSA
2R	3462121	2R_3462121_DEL [dm3] 2R_7574616_DEL [dm6]	AA	A	1.090e^-4	0.755	INTRON Vps13
3L	8021617	3L_8021617_SNP [dm3] 3L_8028517_SNP [dm6]	A	T	1.097e^-4	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2L	4474740	2L_4474740_SNP [dm3] 2L_4474740_SNP [dm6]	C	T	1.104e^-4	0.755	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26880552	3R_26880552_SNP [dm3] 3R_31054830_SNP [dm6]	G	A	1.106e^-4	0.755	UTR_3_PRIME dco UPSTREAM l_3_03670 DOWNSTREAM dco	TF binding site BDTNP1_TFBS_dl
3R	13327765	3R_13327765_SNP [dm3] 3R_17502043_SNP [dm6]	A	G	1.108e^-4	0.755	INTRON Dscam3
3L	3547413	3L_3547413_SNP [dm3] 3L_3547413_SNP [dm6]	T	G	1.109e^-4	0.755	INTRON Eip63E
2R	17741827	2R_17741827_SNP [dm3] 2R_21854322_SNP [dm6]	T	A	1.109e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
X	19260058	X_19260058_SNP [dm3] X_19366025_SNP [dm6]	A	G	1.116e^-4	0.755	INTRON kek5
2L	14993177	2L_14993177_SNP [dm3] 2L_14993177_SNP [dm6]	T	A	1.118e^-4	0.755	INTRON mol
2R	11261467	2R_11261467_SNP [dm3] 2R_15373962_SNP [dm6]	A	T	1.119e^-4	0.755	UPSTREAM CR43276 DOWNSTREAM CR43105 EXON CR43275	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	5884970	2L_5884970_SNP [dm3] 2L_5884970_SNP [dm6]	C	G	1.119e^-4	0.755	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574
2L	2516635	2L_2516635_SNP [dm3] 2L_2516635_SNP [dm6]	T	A	1.126e^-4	0.755	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11080349	2R_11080349_SNP [dm3] 2R_15192844_SNP [dm6]	T	C	1.135e^-4	0.755	SYNONYMOUS_CODING Sfp51E
X	5428601	X_5428601_SNP [dm3] X_5534568_SNP [dm6]	C	G	1.143e^-4	0.755	INTRON Vsx2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6549108	3L_6549108_SNP [dm3] 3L_6556008_SNP [dm6]	G	A	1.162e^-4	0.755	INTRON CG18769	TF binding site mE1_TFBS_inv
3L	6549113	3L_6549113_SNP [dm3] 3L_6556013_SNP [dm6]	G	C	1.162e^-4	0.755	INTRON CG18769	TF binding site mE1_TFBS_inv
2R	3454448	2R_3454448_SNP [dm3] 2R_7566943_SNP [dm6]	G	C	1.168e^-4	0.755	UTR_5_PRIME Vps13 UPSTREAM boca INTRON Vps13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4463407	2R_4463407_SNP [dm3] 2R_8575902_SNP [dm6]	T	C	1.169e^-4	0.755	INTRON CG42326
2L	1256159	2L_1256159_SNP [dm3] 2L_1256159_SNP [dm6]	C	T	1.175e^-4	0.755	UPSTREAM robo3 INTERGENIC
X	2784588	X_2784588_SNP [dm3] X_2890555_SNP [dm6]	C	A	1.181e^-4	0.755	UPSTREAM CG3526 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4452649	2L_4452649_SNP [dm3] 2L_4452649_SNP [dm6]	T	G	1.186e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16326456	3L_16326456_SNP [dm3] 3L_16333356_SNP [dm6]	A	G	1.188e^-4	0.755	DOWNSTREAM retinin INTRON CG13056
2L	1566383	2L_1566383_SNP [dm3] 2L_1566383_SNP [dm6]	C	T	1.192e^-4	0.755	INTRON haf
2L	1562933	2L_1562933_SNP [dm3] 2L_1562933_SNP [dm6]	T	C	1.194e^-4	0.755	INTRON haf	TF binding site mE1_TFBS_inv
X	5058924	X_5058924_SNP [dm3] X_5164891_SNP [dm6]	A	G	1.194e^-4	0.755	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg
2L	4249786	2L_4249786_SNP [dm3] 2L_4249786_SNP [dm6]	T	A	1.201e^-4	0.755	UPSTREAM CR44059 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17000471	X_17000471_SNP [dm3] X_17106438_SNP [dm6]	A	T	1.201e^-4	0.755	UPSTREAM Arpc3B INTERGENIC	transposable element FlyBase
3L	1837039	3L_1837039_SNP [dm3] 3L_1837039_SNP [dm6]	A	C	1.212e^-4	0.755	INTERGENIC
3R	18056364	3R_18056364_DEL [dm3] 3R_22230642_DEL [dm6]	AA	A	1.214e^-4	0.755	INTRON SKIP
3L	8675862	3L_8675862_SNP [dm3] 3L_8682762_SNP [dm6]	A	C	1.228e^-4	0.755	INTERGENIC	regulatory region REDfly_CRMs
2R	19505678	2R_19505678_SNP [dm3] 2R_23618155_SNP [dm6]	G	C	1.231e^-4	0.755	INTERGENIC
3R	18469849	3R_18469849_SNP [dm3] 3R_22644127_SNP [dm6]	C	T	1.235e^-4	0.755	INTRON CG45058
3R	17863975	3R_17863975_SNP [dm3] 3R_22038253_SNP [dm6]	C	T	1.236e^-4	0.755	SYNONYMOUS_CODING pit
2L	14094525	2L_14094525_SNP [dm3] 2L_14094525_SNP [dm6]	T	G	1.242e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20787865	3R_20787865_SNP [dm3] 3R_24962143_SNP [dm6]	C	A	1.244e^-4	0.755	INTERGENIC
2L	3099144	2L_3099144_SNP [dm3] 2L_3099144_SNP [dm6]	C	A	1.250e^-4	0.755	INTRON toc
2R	16677331	2R_16677331_SNP [dm3] 2R_20789826_SNP [dm6]	C	G	1.260e^-4	0.755	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
X	15113010	X_15113010_INS [dm3] X_15218977_INS [dm6]	T	TT	1.281e^-4	0.755	INTERGENIC
3L	1609287	3L_1609287_SNP [dm3] 3L_1609287_SNP [dm6]	C	G	1.287e^-4	0.755	INTRON CG33791 & 1 other
X	19759730	X_19759730_SNP [dm3] X_19865697_SNP [dm6]	C	T	1.307e^-4	0.755	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
2R	4536447	2R_4536447_SNP [dm3] 2R_8648942_SNP [dm6]	T	C	1.313e^-4	0.755	UPSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	13694301	3R_13694301_SNP [dm3] 3R_17868579_SNP [dm6]	C	G	1.313e^-4	0.755	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
X	18906070	X_18906070_SNP [dm3] X_19012037_SNP [dm6]	C	T	1.320e^-4	0.755	SYNONYMOUS_CODING CG43759	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6586870	2L_6586870_SNP [dm3] 2L_6586870_SNP [dm6]	G	A	1.322e^-4	0.755	UTR_5_PRIME CG11319
2L	7142568	2L_7142568_SNP [dm3] 2L_7142568_SNP [dm6]	A	G	1.324e^-4	0.755	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1865907	2L_1865907_INS [dm3] 2L_1865907_INS [dm6]	T	TA	1.333e^-4	0.755	INTRON CG31663
3R	18052262	3R_18052262_SNP [dm3] 3R_22226540_SNP [dm6]	C	A	1.336e^-4	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1361318	2L_1361318_SNP [dm3] 2L_1361318_SNP [dm6]	T	C	1.336e^-4	0.755	INTRON NLaz	TF binding site mE1_TFBS_cad
3L	811463	3L_811463_SNP [dm3] 3L_811463_SNP [dm6]	G	T	1.339e^-4	0.755	INTERGENIC
2R	11264218	2R_11264218_SNP [dm3] 2R_15376713_SNP [dm6]	C	A	1.342e^-4	0.755	UTR_3_PRIME dup UPSTREAM CR43186
X	3356181	X_3356181_SNP [dm3] X_3462148_SNP [dm6]	G	A	1.344e^-4	0.755	NON_SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
X	18907700	X_18907700_SNP [dm3] X_19013667_SNP [dm6]	C	A	1.346e^-4	0.755	INTRON CG43759
2L	9063644	2L_9063644_SNP [dm3] 2L_9063644_SNP [dm6]	A	T	1.346e^-4	0.755	INTRON CG31708	TF binding site mE1_TFBS_inv
3L	12509527	3L_12509527_SNP [dm3] 3L_12516427_SNP [dm6]	T	A	1.347e^-4	0.755	INTRON tral	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14094518	2L_14094518_SNP [dm3] 2L_14094518_SNP [dm6]	G	A	1.353e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9366362	3L_9366362_SNP [dm3] 3L_9373262_SNP [dm6]	C	T	1.356e^-4	0.755	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19523576	3L_19523576_SNP [dm3] 3L_19530476_SNP [dm6]	C	A	1.368e^-4	0.755	INTERGENIC
2L	14094538	2L_14094538_SNP [dm3] 2L_14094538_SNP [dm6]	A	C	1.371e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8311493	2L_8311493_SNP [dm3] 2L_8311493_SNP [dm6]	C	T	1.371e^-4	0.755	UTR_5_PRIME CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	2827124	X_2827124_SNP [dm3] X_2933091_SNP [dm6]	T	C	1.372e^-4	0.755	DOWNSTREAM CG32793 INTRON kirre
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	1.376e^-4	0.755	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	10112742	X_10112742_SNP [dm3] X_10218709_SNP [dm6]	T	A	1.377e^-4	0.755	DOWNSTREAM CR45629 INTRON CG15308 & 1 other
3R	4282459	3R_4282459_DEL [dm3] 3R_8456737_DEL [dm6]	TAT	T	1.380e^-4	0.755	INTRON CG45263
X	15112961	X_15112961_INS [dm3] X_15218928_INS [dm6]	A	ATATAAGGGTAA...	1.380e^-4	0.755	INTERGENIC
2L	14094512	2L_14094512_SNP [dm3] 2L_14094512_SNP [dm6]	G	A	1.383e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13831609	3L_13831609_SNP [dm3] 3L_13838509_SNP [dm6]	G	T	1.385e^-4	0.755	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6768101	3L_6768101_SNP [dm3] 3L_6775001_SNP [dm6]	G	C	1.392e^-4	0.755	INTERGENIC
2L	7915817	2L_7915817_SNP [dm3] 2L_7915817_SNP [dm6]	T	C	1.393e^-4	0.755	INTRON Snoo
3L	7335274	3L_7335274_SNP [dm3] 3L_7342174_SNP [dm6]	A	G	1.395e^-4	0.755	DOWNSTREAM lark INTRON CG8596	TF binding site mE1_TFBS_cad
X	18908192	X_18908192_SNP [dm3] X_19014159_SNP [dm6]	T	C	1.395e^-4	0.755	INTRON CG43759
2L	11497941	2L_11497941_SNP [dm3] 2L_11497941_SNP [dm6]	T	A	1.396e^-4	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11497946	2L_11497946_MNP [dm3] 2L_11497946_MNP [dm6]	TGC	AAA	1.396e^-4	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6733019	2R_6733019_INS [dm3] 2R_10845514_INS [dm6]	T	AAAACTGCCTCAACAA...	1.398e^-4	0.755	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18913797	2R_18913797_SNP [dm3] 2R_23026274_SNP [dm6]	C	G	1.399e^-4	0.755	INTRON twi & 1 other
2R	13153080	2R_13153080_SNP [dm3] 2R_17265575_SNP [dm6]	C	G	1.405e^-4	0.755	UTR_5_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19733623	X_19733623_SNP [dm3] X_19839590_SNP [dm6]	G	C	1.411e^-4	0.755	INTRON pico
X	14748016	X_14748016_SNP [dm3] X_14853983_SNP [dm6]	C	A	1.414e^-4	0.755	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2L	4310724	2L_4310724_SNP [dm3] 2L_4310724_SNP [dm6]	T	C	1.415e^-4	0.755	INTRON tutl
2L	14094527	2L_14094527_SNP [dm3] 2L_14094527_SNP [dm6]	T	A	1.423e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3370787	2L_3370787_SNP [dm3] 2L_3370787_SNP [dm6]	G	C	1.426e^-4	0.755	INTRON CG34394
X	18909226	X_18909226_SNP [dm3] X_19015193_SNP [dm6]	C	G	1.437e^-4	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7335275	3L_7335275_SNP [dm3] 3L_7342175_SNP [dm6]	A	G	1.448e^-4	0.755	DOWNSTREAM lark INTRON CG8596	TF binding site mE1_TFBS_cad
X	15112948	X_15112948_DEL [dm3] X_15218915_DEL [dm6]	AA	A	1.451e^-4	0.755	INTERGENIC
X	12366491	X_12366491_INS [dm3] X_12472458_INS [dm6]	T	TAGATC	1.454e^-4	0.755	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20238849	X_20238849_SNP [dm3] X_20367822_SNP [dm6]	C	T	1.462e^-4	0.755	INTERGENIC
3L	6292500	3L_6292500_SNP [dm3] 3L_6299400_SNP [dm6]	T	A	1.464e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12365328	2L_12365328_SNP [dm3] 2L_12365328_SNP [dm6]	C	T	1.469e^-4	0.755	INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	6547111	3R_6547111_SNP [dm3] 3R_10721389_SNP [dm6]	C	T	1.486e^-4	0.755	INTERGENIC
2L	10091510	2L_10091510_SNP [dm3] 2L_10091510_SNP [dm6]	G	A	1.506e^-4	0.755	UTR_3_PRIME CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo
2R	11267646	2R_11267646_SNP [dm3] 2R_15380141_SNP [dm6]	T	C	1.513e^-4	0.755	SYNONYMOUS_CODING dup UPSTREAM SRPK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4339653	2L_4339653_SNP [dm3] 2L_4339653_SNP [dm6]	C	T	1.522e^-4	0.755	INTRON Atet	TF binding site mE1_TFBS_inv
2L	3896838	2L_3896838_SNP [dm3] 2L_3896838_SNP [dm6]	G	T	1.525e^-4	0.755	UPSTREAM capu INTRON capu
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	1.526e^-4	0.755	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4324997	2L_4324997_SNP [dm3] 2L_4324997_SNP [dm6]	T	C	1.547e^-4	0.755	SYNONYMOUS_CODING CG16857
2L	4371665	2L_4371665_DEL [dm3] 2L_4371665_DEL [dm6]	TCC	G	1.552e^-4	0.755	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	18052235	3R_18052235_SNP [dm3] 3R_22226513_SNP [dm6]	T	C	1.553e^-4	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8515118	2R_8515118_SNP [dm3] 2R_12627613_SNP [dm6]	A	G	1.558e^-4	0.755	NON_SYNONYMOUS_CODING CG17760
2L	2510663	2L_2510663_SNP [dm3] 2L_2510663_SNP [dm6]	T	G	1.558e^-4	0.755	INTERGENIC
2R	18056622	2R_18056622_SNP [dm3] 2R_22169117_SNP [dm6]	C	A	1.561e^-4	0.755	INTRON a	TF binding site mE1_TFBS_inv
3L	14455702	3L_14455702_SNP [dm3] 3L_14462602_SNP [dm6]	C	A	1.564e^-4	0.755	INTRON bbg
2L	4453573	2L_4453573_SNP [dm3] 2L_4453573_SNP [dm6]	T	G	1.564e^-4	0.755	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16413194	2R_16413194_SNP [dm3] 2R_20525689_SNP [dm6]	T	A	1.569e^-4	0.755	UPSTREAM CG13422 EXON CR44650
X	18906484	X_18906484_SNP [dm3] X_19012451_SNP [dm6]	C	G	1.592e^-4	0.755	SYNONYMOUS_CODING CG43759	TF binding site mE1_TFBS_chinmo
3L	2750687	3L_2750687_SNP [dm3] 3L_2750687_SNP [dm6]	C	G	1.599e^-4	0.755	INTRON Mrtf
3R	6480968	3R_6480968_SNP [dm3] 3R_10655246_SNP [dm6]	C	T	1.601e^-4	0.755	INTERGENIC
3L	14845009	3L_14845009_SNP [dm3] 3L_14851909_SNP [dm6]	C	T	1.606e^-4	0.755	INTRON CG17839
2L	7151221	2L_7151221_SNP [dm3] 2L_7151221_SNP [dm6]	G	C	1.617e^-4	0.755	INTRON Pvf3
2L	4452745	2L_4452745_SNP [dm3] 2L_4452745_SNP [dm6]	T	C	1.624e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13221365	X_13221365_SNP [dm3] X_13327332_SNP [dm6]	C	A	1.626e^-4	0.755	INTRON IP3K2
X	19760780	X_19760780_SNP [dm3] X_19866747_SNP [dm6]	G	A	1.627e^-4	0.755	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	5058770	X_5058770_SNP [dm3] X_5164737_SNP [dm6]	T	A	1.630e^-4	0.755	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg
3L	12165813	3L_12165813_SNP [dm3] 3L_12172713_SNP [dm6]	C	A	1.634e^-4	0.755	INTRON Rh7
3L	10733896	3L_10733896_SNP [dm3] 3L_10740796_SNP [dm6]	A	G	1.635e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22224779	X_22224779_SNP [dm3] X_22822943_SNP [dm6]	A	G	1.638e^-4	0.755	INTERGENIC	transposable element FlyBase
2R	14724723	2R_14724723_SNP [dm3] 2R_18837218_SNP [dm6]	C	G	1.642e^-4	0.755	SYNONYMOUS_CODING CG15099 UTR_3_PRIME CG15099 DOWNSTREAM CG15083
3L	16326484	3L_16326484_DEL [dm3] 3L_16333384_DEL [dm6]	TTT	T	1.647e^-4	0.755	DOWNSTREAM retinin INTRON CG13056
3L	10598189	3L_10598189_INS [dm3] 3L_10605089_INS [dm6]	A	AG	1.649e^-4	0.755	INTERGENIC
3R	16517123	3R_16517123_SNP [dm3] 3R_20691401_SNP [dm6]	C	A	1.657e^-4	0.755	INTRON Oamb	TF binding site mE1_TFBS_cad
2R	9898807	2R_9898807_SNP [dm3] 2R_14011302_SNP [dm6]	T	C	1.661e^-4	0.755	INTRON mam
2R	4184132	2R_4184132_SNP [dm3] 2R_8296627_SNP [dm6]	C	T	1.663e^-4	0.755	INTERGENIC
X	19760607	X_19760607_INS [dm3] X_19866574_INS [dm6]	A	AA	1.663e^-4	0.755	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18833780	2L_18833780_DEL [dm3] 2L_18833780_DEL [dm6]	CAATGTGTGTATTGTTC...	C	1.663e^-4	0.755	UTR_3_PRIME CG10600 DOWNSTREAM ScpX
X	22223693	X_22223693_SNP [dm3] X_22821857_SNP [dm6]	C	A	1.664e^-4	0.755	INTERGENIC	transposable element FlyBase
3L	9948285	3L_9948285_SNP [dm3] 3L_9955185_SNP [dm6]	C	T	1.668e^-4	0.755	INTRON CG34356
3R	11465501	3R_11465501_SNP [dm3] 3R_15639779_SNP [dm6]	C	A	1.670e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9948284	3L_9948284_SNP [dm3] 3L_9955184_SNP [dm6]	T	A	1.672e^-4	0.755	INTRON CG34356
3R	4853607	3R_4853607_SNP [dm3] 3R_9027885_SNP [dm6]	T	A	1.676e^-4	0.755	INTRON neur	TF binding site mE1_TFBS_HSA
2R	9898739	2R_9898739_SNP [dm3] 2R_14011234_SNP [dm6]	C	A	1.679e^-4	0.755	INTRON mam
3R	16276508	3R_16276508_SNP [dm3] 3R_20450786_SNP [dm6]	A	T	1.680e^-4	0.755	INTRON Gfrl
X	4539167	X_4539167_SNP [dm3] X_4645134_SNP [dm6]	C	T	1.682e^-4	0.755	UTR_3_PRIME HLH4C UPSTREAM CG3062
2R	3179395	2R_3179395_SNP [dm3] 2R_7291890_SNP [dm6]	A	G	1.683e^-4	0.755	INTRON pwn	TF binding site mE1_TFBS_cad
2L	4357559	2L_4357559_SNP [dm3] 2L_4357559_SNP [dm6]	G	A	1.692e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	18907444	X_18907444_SNP [dm3] X_19013411_SNP [dm6]	C	T	1.703e^-4	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_sna
2R	8515010	2R_8515010_SNP [dm3] 2R_12627505_SNP [dm6]	T	C	1.703e^-4	0.755	INTRON CG17760
3R	16276475	3R_16276475_SNP [dm3] 3R_20450753_SNP [dm6]	G	T	1.705e^-4	0.755	INTRON Gfrl
3R	17379036	3R_17379036_SNP [dm3] 3R_21553314_SNP [dm6]	C	T	1.713e^-4	0.755	INTRON slou
3L	18559968	3L_18559968_SNP [dm3] 3L_18566868_SNP [dm6]	T	C	1.714e^-4	0.755	INTRON AstC-R1
2R	3484438	2R_3484438_SNP [dm3] 2R_7596933_SNP [dm6]	T	C	1.718e^-4	0.755	INTRON CG1358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10535898	2R_10535898_SNP [dm3] 2R_14648393_SNP [dm6]	G	T	1.718e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14653475	3L_14653475_SNP [dm3] 3L_14660375_SNP [dm6]	T	C	1.722e^-4	0.755	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19141744	X_19141744_SNP [dm3] X_19247711_SNP [dm6]	C	T	1.734e^-4	0.755	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7916485	2L_7916485_SNP [dm3] 2L_7916485_SNP [dm6]	T	A	1.736e^-4	0.755	INTRON Snoo
2L	4371670	2L_4371670_SNP [dm3] 2L_4371670_SNP [dm6]	A	T	1.740e^-4	0.755	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	4452622	2L_4452622_SNP [dm3] 2L_4452622_SNP [dm6]	A	G	1.745e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20238828	X_20238828_SNP [dm3] X_20367801_SNP [dm6]	G	A	1.747e^-4	0.755	INTERGENIC
X	20263186	X_20263186_SNP [dm3] X_20392159_SNP [dm6]	T	G	1.749e^-4	0.755	SYNONYMOUS_CODING l_1_G0004 DOWNSTREAM Syx16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9933096	3L_9933096_SNP [dm3] 3L_9939996_SNP [dm6]	C	G	1.752e^-4	0.755	INTRON CG34356
2R	6286233	2R_6286233_SNP [dm3] 2R_10398728_SNP [dm6]	T	C	1.756e^-4	0.755	INTRON CG42732
3R	17863098	3R_17863098_SNP [dm3] 3R_22037376_SNP [dm6]	A	G	1.759e^-4	0.755	SYNONYMOUS_CODING pit DOWNSTREAM scaRNA:MeU5-G38	TF binding site mE1_TFBS_sens
2L	11497955	2L_11497955_INS [dm3] 2L_11497955_INS [dm6]	CC	AACAT	1.770e^-4	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12864905	3L_12864905_SNP [dm3] 3L_12871805_SNP [dm6]	A	G	1.770e^-4	0.755	INTERGENIC
2L	14067548	2L_14067548_SNP [dm3] 2L_14067548_SNP [dm6]	T	G	1.781e^-4	0.755	INTRON nAChRalpha5
3L	19930851	3L_19930851_SNP [dm3] 3L_19937751_SNP [dm6]	T	C	1.789e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	18052315	3R_18052315_SNP [dm3] 3R_22226593_SNP [dm6]	T	C	1.789e^-4	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22869883	3R_22869883_SNP [dm3] 3R_27044161_SNP [dm6]	T	G	1.801e^-4	0.755	INTRON RYa-R
3R	19852475	3R_19852475_SNP [dm3] 3R_24026753_SNP [dm6]	A	T	1.801e^-4	0.755	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24880407	3R_24880407_SNP [dm3] 3R_29054685_SNP [dm6]	A	T	1.807e^-4	0.755	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4452897	2L_4452897_SNP [dm3] 2L_4452897_SNP [dm6]	A	G	1.809e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7462235	2L_7462235_SNP [dm3] 2L_7462235_SNP [dm6]	C	T	1.816e^-4	0.755	NON_SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad
X	1787057	X_1787057_SNP [dm3] X_1893024_SNP [dm6]	A	G	1.817e^-4	0.755	INTRON arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	13744065	2L_13744065_SNP [dm3] 2L_13744065_SNP [dm6]	G	T	1.820e^-4	0.755	INTERGENIC
X	5304561	X_5304561_INS [dm3] X_5410528_INS [dm6]	T	TCCATTT	1.822e^-4	0.755	CODON_INSERTION NAAT1
2R	17442676	2R_17442676_SNP [dm3] 2R_21555171_SNP [dm6]	C	G	1.824e^-4	0.755	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17607826	2R_17607826_SNP [dm3] 2R_21720321_SNP [dm6]	G	A	1.831e^-4	0.755	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	7124435	3L_7124435_SNP [dm3] 3L_7131335_SNP [dm6]	T	C	1.838e^-4	0.755	SYNONYMOUS_CODING CG8628 UPSTREAM Dbi
3R	16250917	3R_16250917_SNP [dm3] 3R_20425195_SNP [dm6]	C	T	1.844e^-4	0.755	INTRON Gfrl
2L	14094524	2L_14094524_SNP [dm3] 2L_14094524_SNP [dm6]	A	C	1.848e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	19761118	X_19761118_SNP [dm3] X_19867085_SNP [dm6]	C	G	1.850e^-4	0.755	UTR_5_PRIME Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	16774363	3L_16774363_DEL [dm3] 3L_16781263_DEL [dm6]	TACAT	T	1.852e^-4	0.755	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
3R	20787402	3R_20787402_SNP [dm3] 3R_24961680_SNP [dm6]	T	A	1.856e^-4	0.755	INTERGENIC
2R	16663746	2R_16663746_SNP [dm3] 2R_20776241_SNP [dm6]	T	C	1.857e^-4	0.755	SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
3L	10546249	3L_10546249_DEL [dm3] 3L_10553149_DEL [dm6]	TGTTTTAGTCGCTTCGGGCG...	T	1.861e^-4	0.755	INTRON A2bp1
3R	13793978	3R_13793978_SNP [dm3] 3R_17968256_SNP [dm6]	A	T	1.871e^-4	0.755	INTRON cpo
X	8085358	X_8085358_SNP [dm3] X_8191325_SNP [dm6]	G	C	1.871e^-4	0.755	INTRON sdt
2R	7630365	2R_7630365_SNP [dm3] 2R_11742860_SNP [dm6]	C	T	1.872e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19505623	2R_19505623_SNP [dm3] 2R_23618100_SNP [dm6]	G	T	1.872e^-4	0.755	INTERGENIC
2L	1912980	2L_1912980_SNP [dm3] 2L_1912980_SNP [dm6]	A	G	1.875e^-4	0.755	INTRON CG7337
3L	9225765	3L_9225765_SNP [dm3] 3L_9232665_SNP [dm6]	C	A	1.884e^-4	0.755	INTERGENIC
2R	17282340	2R_17282340_DEL [dm3] 2R_21394835_DEL [dm6]	GCG	A	1.887e^-4	0.755	INTRON Sdc
2L	4059338	2L_4059338_SNP [dm3] 2L_4059338_SNP [dm6]	C	T	1.887e^-4	0.755	INTRON ed
3R	25738163	3R_25738163_SNP [dm3] 3R_29912441_SNP [dm6]	T	G	1.888e^-4	0.755	DOWNSTREAM Capa INTRON CG31036
3L	16326480	3L_16326480_SNP [dm3] 3L_16333380_SNP [dm6]	A	C	1.890e^-4	0.755	DOWNSTREAM retinin INTRON CG13056
3R	13800723	3R_13800723_SNP [dm3] 3R_17975001_SNP [dm6]	A	C	1.902e^-4	0.755	INTRON cpo
2R	5430191	2R_5430191_SNP [dm3] 2R_9542686_SNP [dm6]	G	A	1.906e^-4	0.755	UTR_3_PRIME CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1537856	3R_1537856_DEL [dm3] 3R_5712134_DEL [dm6]	TCGATGTGCGCACAAAATGT...	T	1.909e^-4	0.755	UTR_3_PRIME plx DOWNSTREAM cas	TF binding site mE1_TFBS_cad
2L	1361506	2L_1361506_SNP [dm3] 2L_1361506_SNP [dm6]	A	G	1.915e^-4	0.755	SYNONYMOUS_CODING NLaz	TF binding site mE1_TFBS_cad
3L	2404621	3L_2404621_SNP [dm3] 3L_2404621_SNP [dm6]	C	T	1.917e^-4	0.755	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12328866	2L_12328866_SNP [dm3] 2L_12328866_SNP [dm6]	G	T	1.920e^-4	0.755	INTERGENIC
2L	10727218	2L_10727218_SNP [dm3] 2L_10727218_SNP [dm6]	G	A	1.921e^-4	0.755	INTRON CG6431	TF binding site mE1_TFBS_cad
3L	9948286	3L_9948286_INS [dm3] 3L_9955186_INS [dm6]	A	ATT	1.922e^-4	0.755	INTRON CG34356
2L	1563850	2L_1563850_DEL [dm3] 2L_1563850_DEL [dm6]	AGGCAAATGATTATTTTCAA...	A	1.926e^-4	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	10554560	2L_10554560_SNP [dm3] 2L_10554560_SNP [dm6]	T	A	1.929e^-4	0.755	INTRON Trim9	TF binding site mE1_TFBS_cad
2R	9465560	2R_9465560_SNP [dm3] 2R_13578055_SNP [dm6]	T	A	1.935e^-4	0.755	DOWNSTREAM CR44365 EXON CR44366	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	4439525	2L_4439525_SNP [dm3] 2L_4439525_SNP [dm6]	A	T	1.937e^-4	0.755	START_GAINED CG15431 UTR_5_PRIME CG15431 INTRON CG15431
2L	4249777	2L_4249777_DEL [dm3] 2L_4249777_DEL [dm6]	GTG	G	1.939e^-4	0.755	UPSTREAM CR44059 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11497982	2L_11497982_SNP [dm3] 2L_11497982_SNP [dm6]	G	A	1.941e^-4	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	4463474	2R_4463474_SNP [dm3] 2R_8575969_SNP [dm6]	G	T	1.944e^-4	0.755	INTRON CG42326
2L	12328942	2L_12328942_SNP [dm3] 2L_12328942_SNP [dm6]	T	C	1.944e^-4	0.755	INTERGENIC
3L	9644923	3L_9644923_SNP [dm3] 3L_9651823_SNP [dm6]	A	G	1.946e^-4	0.755	INTRON fry & 1 other
3R	4854246	3R_4854246_SNP [dm3] 3R_9028524_SNP [dm6]	A	G	1.949e^-4	0.755	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3471491	2R_3471491_SNP [dm3] 2R_7583986_SNP [dm6]	C	T	1.963e^-4	0.755	INTRON blow
2L	3097030	2L_3097030_SNP [dm3] 2L_3097030_SNP [dm6]	G	T	1.975e^-4	0.755	INTRON toc
3R	1056095	3R_1056095_SNP [dm3] 3R_5230373_SNP [dm6]	T	G	1.977e^-4	0.755	SYNONYMOUS_CODING Kat60	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13142033	2L_13142033_SNP [dm3] 2L_13142033_SNP [dm6]	G	A	1.981e^-4	0.755	DOWNSTREAM CG9928 INTERGENIC
X	14244765	X_14244765_SNP [dm3] X_14350732_SNP [dm6]	C	T	1.989e^-4	0.755	INTRON dpr8
3R	15124774	3R_15124774_SNP [dm3] 3R_19299052_SNP [dm6]	T	A	1.998e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9190138	2R_9190138_SNP [dm3] 2R_13302633_SNP [dm6]	T	C	1.998e^-4	0.755	INTERGENIC
X	4432384	X_4432384_SNP [dm3] X_4538351_SNP [dm6]	G	T	2.008e^-4	0.755	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17105172	2R_17105172_INS [dm3] 2R_21217667_INS [dm6]	C	CGTAATCAGTTGC...	2.009e^-4	0.755	UTR_5_PRIME CG15661 DOWNSTREAM ASPP INTRON CG15661
X	15857978	X_15857978_SNP [dm3] X_15963945_SNP [dm6]	A	C	2.011e^-4	0.755	SYNONYMOUS_CODING mmd
3L	11140255	3L_11140255_SNP [dm3] 3L_11147155_SNP [dm6]	C	A	2.016e^-4	0.755	INTRON CG32082	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19972953	2L_19972953_SNP [dm3] 2L_19972953_SNP [dm6]	T	C	2.020e^-4	0.755	INTRON CG43861
X	19733667	X_19733667_SNP [dm3] X_19839634_SNP [dm6]	T	A	2.023e^-4	0.755	INTRON pico
3L	7335449	3L_7335449_SNP [dm3] 3L_7342349_SNP [dm6]	G	A	2.026e^-4	0.755	SYNONYMOUS_CODING CG8596 DOWNSTREAM lark	TF binding site mE1_TFBS_cad
2L	4861098	2L_4861098_SNP [dm3] 2L_4861098_SNP [dm6]	G	A	2.028e^-4	0.755	INTRON pog
2L	7057701	2L_7057701_SNP [dm3] 2L_7057701_SNP [dm6]	T	C	2.036e^-4	0.755	INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17936227	3R_17936227_SNP [dm3] 3R_22110505_SNP [dm6]	G	T	2.037e^-4	0.755	UPSTREAM CG5778 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14947758	2L_14947758_SNP [dm3] 2L_14947758_SNP [dm6]	A	T	2.041e^-4	0.755	INTRON CG42313
2L	1361051	2L_1361051_SNP [dm3] 2L_1361051_SNP [dm6]	A	G	2.057e^-4	0.755	INTRON NLaz
2L	6252369	2L_6252369_DEL [dm3] 2L_6252369_DEL [dm6]	CATGACCCCCATC...	T	2.066e^-4	0.755	UPSTREAM Ddr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4320551	2L_4320551_SNP [dm3] 2L_4320551_SNP [dm6]	G	A	2.069e^-4	0.755	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19839641	3L_19839641_SNP [dm3] 3L_19846541_SNP [dm6]	G	A	2.073e^-4	0.755	UPSTREAM Papss INTRON Papss	TF binding site mE1_TFBS_inv
3L	15739163	3L_15739163_SNP [dm3] 3L_15746063_SNP [dm6]	T	A	2.080e^-4	0.755	INTERGENIC
2R	14341188	2R_14341188_SNP [dm3] 2R_18453683_SNP [dm6]	A	G	2.081e^-4	0.755	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	3099145	2L_3099145_SNP [dm3] 2L_3099145_SNP [dm6]	A	C	2.093e^-4	0.755	INTRON toc
3R	16276520	3R_16276520_SNP [dm3] 3R_20450798_SNP [dm6]	A	G	2.107e^-4	0.755	INTRON Gfrl
3L	59686	3L_59686_INS [dm3] 3L_59686_INS [dm6]	A	AA	2.114e^-4	0.755	INTERGENIC
3L	18155143	3L_18155143_SNP [dm3] 3L_18162043_SNP [dm6]	C	G	2.118e^-4	0.755	INTRON CG13699
2L	12263611	2L_12263611_SNP [dm3] 2L_12263611_SNP [dm6]	G	A	2.129e^-4	0.755	INTRON aret
X	22067064	X_22067064_SNP [dm3] X_22665228_SNP [dm6]	T	A	2.133e^-4	0.755	INTRON CR44997
X	18908818	X_18908818_DEL [dm3] X_19014785_DEL [dm6]	TTGTT	T	2.134e^-4	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5673827	3L_5673827_SNP [dm3] 3L_5680727_SNP [dm6]	C	G	2.135e^-4	0.755	INTRON sif
2L	7586999	2L_7586999_SNP [dm3] 2L_7586999_SNP [dm6]	G	A	2.141e^-4	0.755	INTERGENIC
3L	9554252	3L_9554252_SNP [dm3] 3L_9561152_SNP [dm6]	T	G	2.145e^-4	0.755	INTRON CG42673
2L	13254121	2L_13254121_SNP [dm3] 2L_13254121_SNP [dm6]	G	T	2.154e^-4	0.755	INTRON CG31728
3L	21690810	3L_21690810_SNP [dm3] 3L_21697710_SNP [dm6]	A	T	2.154e^-4	0.755	INTRON CG32447	TF binding site mE1_TFBS_chinmo
2L	3370977	2L_3370977_SNP [dm3] 2L_3370977_SNP [dm6]	C	T	2.158e^-4	0.755	SYNONYMOUS_CODING CG34394 INTRON CG34394
3R	13694334	3R_13694334_SNP [dm3] 3R_17868612_SNP [dm6]	A	G	2.164e^-4	0.755	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	14328034	3R_14328034_SNP [dm3] 3R_18502312_SNP [dm6]	G	T	2.167e^-4	0.755	INTRON fru
2L	740671	2L_740671_SNP [dm3] 2L_740671_SNP [dm6]	A	T	2.173e^-4	0.755	SYNONYMOUS_CODING Eaat2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14094542	2L_14094542_SNP [dm3] 2L_14094542_SNP [dm6]	A	G	2.173e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	19143666	X_19143666_SNP [dm3] X_19249633_SNP [dm6]	A	T	2.181e^-4	0.755	INTRON Hs3st-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16963147	3L_16963147_SNP [dm3] 3L_16970047_SNP [dm6]	T	C	2.181e^-4	0.755	UTR_5_PRIME Exn
2L	4452613	2L_4452613_SNP [dm3] 2L_4452613_SNP [dm6]	A	G	2.182e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9456237	2R_9456237_SNP [dm3] 2R_13568732_SNP [dm6]	C	T	2.188e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
2R	9898812	2R_9898812_SNP [dm3] 2R_14011307_SNP [dm6]	A	T	2.193e^-4	0.755	INTRON mam
3L	15137301	3L_15137301_SNP [dm3] 3L_15144201_SNP [dm6]	A	C	2.195e^-4	0.755	UPSTREAM Pex3 & 1 other DOWNSTREAM CR45397 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25477409	3R_25477409_DEL [dm3] 3R_29651687_DEL [dm6]	AAA	A	2.204e^-4	0.755	INTRON Dop1R2
3R	25477413	3R_25477413_DEL [dm3] 3R_29651691_DEL [dm6]	CGTAGA	C	2.204e^-4	0.755	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3L	14457108	3L_14457108_SNP [dm3] 3L_14464008_SNP [dm6]	C	G	2.211e^-4	0.755	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21115229	3R_21115229_SNP [dm3] 3R_25289507_SNP [dm6]	A	C	2.214e^-4	0.755	UPSTREAM CG11893 DOWNSTREAM CG13658 INTERGENIC
2L	3760991	2L_3760991_SNP [dm3] 2L_3760991_SNP [dm6]	A	C	2.226e^-4	0.755	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo
3L	2686823	3L_2686823_SNP [dm3] 3L_2686823_SNP [dm6]	C	A	2.231e^-4	0.755	INTRON Fife
2L	5887273	2L_5887273_SNP [dm3] 2L_5887273_SNP [dm6]	T	C	2.232e^-4	0.755	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
X	17001319	X_17001319_SNP [dm3] X_17107286_SNP [dm6]	A	C	2.233e^-4	0.755	UPSTREAM CG5004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	2329699	3L_2329699_SNP [dm3] 3L_2329699_SNP [dm6]	C	T	2.238e^-4	0.755	INTRON MsR1
3L	2329700	3L_2329700_SNP [dm3] 3L_2329700_SNP [dm6]	T	G	2.238e^-4	0.755	INTRON MsR1
2L	1545392	2L_1545392_SNP [dm3] 2L_1545392_SNP [dm6]	G	A	2.255e^-4	0.755	INTERGENIC
X	22060374	X_22060374_SNP [dm3] X_22658538_SNP [dm6]	G	A	2.257e^-4	0.755	INTRON CR44997
3L	11241939	3L_11241939_DEL [dm3] 3L_11248839_DEL [dm6]	TA	T	2.262e^-4	0.755	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3R	24691514	3R_24691514_SNP [dm3] 3R_28865792_SNP [dm6]	G	A	2.266e^-4	0.755	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	6116239	3R_6116239_SNP [dm3] 3R_10290517_SNP [dm6]	A	C	2.270e^-4	0.755	UPSTREAM CG43143 INTRON CG43143
3R	15250636	3R_15250636_SNP [dm3] 3R_19424914_SNP [dm6]	G	A	2.271e^-4	0.755	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
3L	13419006	3L_13419006_INS [dm3] 3L_13425906_INS [dm6]	T	TT	2.274e^-4	0.755	UTR_3_PRIME CG14105 UPSTREAM CG14106
2L	14095136	2L_14095136_SNP [dm3] 2L_14095136_SNP [dm6]	T	C	2.284e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	3337515	2L_3337515_SNP [dm3] 2L_3337515_SNP [dm6]	G	A	2.286e^-4	0.755	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8338703	X_8338703_SNP [dm3] X_8444670_SNP [dm6]	G	T	2.287e^-4	0.755	INTERGENIC
3L	9549373	3L_9549373_SNP [dm3] 3L_9556273_SNP [dm6]	A	C	2.296e^-4	0.755	INTRON CG42673
3R	12966864	3R_12966864_SNP [dm3] 3R_17141142_SNP [dm6]	T	C	2.296e^-4	0.755	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
X	5732096	X_5732096_SNP [dm3] X_5838063_SNP [dm6]	T	A	2.299e^-4	0.755	SYNONYMOUS_CODING CG15765
2L	1794871	2L_1794871_SNP [dm3] 2L_1794871_SNP [dm6]	C	T	2.305e^-4	0.755	NON_SYNONYMOUS_CODING Gr22a
X	19142555	X_19142555_SNP [dm3] X_19248522_SNP [dm6]	T	A	2.306e^-4	0.755	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19142556	X_19142556_SNP [dm3] X_19248523_SNP [dm6]	G	C	2.306e^-4	0.755	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1015828	2L_1015828_SNP [dm3] 2L_1015828_SNP [dm6]	T	C	2.308e^-4	0.755	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13850357	2L_13850357_SNP [dm3] 2L_13850357_SNP [dm6]	C	T	2.314e^-4	0.755	DOWNSTREAM CG7968 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	5428694	X_5428694_SNP [dm3] X_5534661_SNP [dm6]	T	C	2.317e^-4	0.755	INTRON Vsx2
2R	14792691	2R_14792691_SNP [dm3] 2R_18905186_SNP [dm6]	T	G	2.328e^-4	0.755	INTRON sano
X	10117178	X_10117178_SNP [dm3] X_10223145_SNP [dm6]	T	C	2.330e^-4	0.755	SYNONYMOUS_CODING CG34408 INTRON CG34408
2L	6386512	2L_6386512_SNP [dm3] 2L_6386512_SNP [dm6]	A	C	2.331e^-4	0.755	UPSTREAM CG42370 INTRON CG42368
X	6682023	X_6682023_SNP [dm3] X_6787990_SNP [dm6]	C	T	2.331e^-4	0.755	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
X	9978521	X_9978521_SNP [dm3] X_10084488_SNP [dm6]	A	G	2.337e^-4	0.755	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
3R	22075381	3R_22075381_SNP [dm3] 3R_26249659_SNP [dm6]	A	C	2.337e^-4	0.755	INTRON CR42745
2L	9679134	2L_9679134_SNP [dm3] 2L_9679134_SNP [dm6]	G	T	2.338e^-4	0.755	INTERGENIC
2L	10713459	2L_10713459_SNP [dm3] 2L_10713459_SNP [dm6]	T	G	2.341e^-4	0.755	INTERGENIC
2R	11248749	2R_11248749_SNP [dm3] 2R_15361244_SNP [dm6]	A	T	2.343e^-4	0.755	INTRON unc-5
2L	18647760	2L_18647760_SNP [dm3] 2L_18647760_SNP [dm6]	G	C	2.349e^-4	0.755	INTRON MESR3
2L	13744214	2L_13744214_SNP [dm3] 2L_13744214_SNP [dm6]	T	C	2.365e^-4	0.755	INTERGENIC
3R	21189053	3R_21189053_SNP [dm3] 3R_25363331_SNP [dm6]	G	T	2.378e^-4	0.755	INTRON Fur1
3L	12165828	3L_12165828_SNP [dm3] 3L_12172728_SNP [dm6]	A	T	2.383e^-4	0.755	INTRON Rh7
2R	13932134	2R_13932134_SNP [dm3] 2R_18044629_SNP [dm6]	G	A	2.386e^-4	0.755	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
X	18908195	X_18908195_INS [dm3] X_19014162_INS [dm6]	A	ACATATATACCACA...	2.390e^-4	0.755	INTRON CG43759
2R	16413951	2R_16413951_SNP [dm3] 2R_20526446_SNP [dm6]	A	G	2.392e^-4	0.755	SYNONYMOUS_CODING CG13422 DOWNSTREAM CR44650
3L	11351231	3L_11351231_SNP [dm3] 3L_11358131_SNP [dm6]	G	A	2.400e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16276250	3R_16276250_SNP [dm3] 3R_20450528_SNP [dm6]	T	C	2.406e^-4	0.755	UPSTREAM Gfrl INTRON Gfrl
X	18907856	X_18907856_SNP [dm3] X_19013823_SNP [dm6]	C	T	2.410e^-4	0.755	INTRON CG43759
3R	21377347	3R_21377347_SNP [dm3] 3R_25551625_SNP [dm6]	A	G	2.411e^-4	0.755	INTRON msi
3R	16257316	3R_16257316_SNP [dm3] 3R_20431594_SNP [dm6]	A	G	2.420e^-4	0.755	INTRON Gfrl
2R	3177340	2R_3177340_SNP [dm3] 2R_7289835_SNP [dm6]	G	A	2.423e^-4	0.755	INTRON pwn
2L	7336173	2L_7336173_SNP [dm3] 2L_7336173_SNP [dm6]	A	G	2.424e^-4	0.755	INTRON Wnt6
3R	3494513	3R_3494513_SNP [dm3] 3R_7668791_SNP [dm6]	A	G	2.424e^-4	0.755	INTRON Nlg1
2L	10928332	2L_10928332_SNP [dm3] 2L_10928332_SNP [dm6]	C	A	2.425e^-4	0.755	INTRON dpr2
X	18917368	X_18917368_SNP [dm3] X_19023335_SNP [dm6]	C	T	2.428e^-4	0.755	INTRON CG43759
3L	14851861	3L_14851861_SNP [dm3] 3L_14858761_SNP [dm6]	T	C	2.429e^-4	0.755	INTRON CG17839
3R	24673905	3R_24673905_SNP [dm3] 3R_28848183_SNP [dm6]	A	T	2.433e^-4	0.755	INTRON spg
2L	9101879	2L_9101879_SNP [dm3] 2L_9101879_SNP [dm6]	G	C	2.434e^-4	0.755	INTERGENIC
3L	13208995	3L_13208995_DEL [dm3] 3L_13215895_DEL [dm6]	TT	T	2.435e^-4	0.755	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3817711	2L_3817711_SNP [dm3] 2L_3817711_SNP [dm6]	C	T	2.470e^-4	0.755	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27334261	3R_27334261_SNP [dm3] 3R_31508539_SNP [dm6]	T	G	2.470e^-4	0.755	INTERGENIC
2L	14094539	2L_14094539_SNP [dm3] 2L_14094539_SNP [dm6]	G	C	2.471e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16743021	3L_16743021_SNP [dm3] 3L_16749921_SNP [dm6]	A	G	2.482e^-4	0.755	INTERGENIC
2L	19446506	2L_19446506_SNP [dm3] 2L_19446506_SNP [dm6]	G	A	2.485e^-4	0.755	NON_SYNONYMOUS_CODING RanGAP DOWNSTREAM Top2	TF binding site mE1_TFBS_sens
2L	14091970	2L_14091970_SNP [dm3] 2L_14091970_SNP [dm6]	A	T	2.485e^-4	0.755	UTR_3_PRIME nAChRalpha5
2L	19508931	2L_19508931_SNP [dm3] 2L_19508931_SNP [dm6]	T	G	2.488e^-4	0.755	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18917511	X_18917511_SNP [dm3] X_19023478_SNP [dm6]	G	T	2.489e^-4	0.755	INTRON CG43759
2R	11261485	2R_11261485_SNP [dm3] 2R_15373980_SNP [dm6]	T	A	2.499e^-4	0.755	UPSTREAM CR43276 DOWNSTREAM CR43105 EXON CR43275	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	17161850	2R_17161850_SNP [dm3] 2R_21274345_SNP [dm6]	C	G	2.503e^-4	0.755	INTRON Rgk3
X	19109240	X_19109240_SNP [dm3] X_19215207_SNP [dm6]	A	T	2.505e^-4	0.755	UPSTREAM Muc18B DOWNSTREAM Mur18B INTERGENIC
2R	12665290	2R_12665290_SNP [dm3] 2R_16777785_SNP [dm6]	T	G	2.505e^-4	0.755	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1252985	3L_1252985_SNP [dm3] 3L_1252985_SNP [dm6]	T	C	2.515e^-4	0.755	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9526272	2L_9526272_DEL [dm3] 2L_9526272_DEL [dm6]	TAA	T	2.519e^-4	0.755	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7916476	2L_7916476_SNP [dm3] 2L_7916476_SNP [dm6]	A	T	2.522e^-4	0.755	INTRON Snoo
3L	6694325	3L_6694325_SNP [dm3] 3L_6701225_SNP [dm6]	T	C	2.529e^-4	0.755	INTRON SP1173
2L	20504559	2L_20504559_SNP [dm3] 2L_20504559_SNP [dm6]	C	A	2.530e^-4	0.755	INTERGENIC
3L	2728342	3L_2728342_SNP [dm3] 3L_2728342_SNP [dm6]	C	T	2.534e^-4	0.755	INTRON Mrtf	TF binding site mE1_TFBS_chinmo
X	5254057	X_5254057_SNP [dm3] X_5360024_SNP [dm6]	C	A	2.534e^-4	0.755	INTRON SK
2L	7003908	2L_7003908_SNP [dm3] 2L_7003908_SNP [dm6]	T	C	2.540e^-4	0.755	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	18711653	3R_18711653_SNP [dm3] 3R_22885931_SNP [dm6]	C	T	2.542e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14664627	3L_14664627_SNP [dm3] 3L_14671527_SNP [dm6]	T	A	2.547e^-4	0.755	UTR_3_PRIME dlp DOWNSTREAM CG43121	TF binding site mE1_TFBS_bab1
2L	14759142	2L_14759142_DEL [dm3] 2L_14759142_DEL [dm6]	TG	T	2.551e^-4	0.755	INTERGENIC
3L	16326518	3L_16326518_SNP [dm3] 3L_16333418_SNP [dm6]	T	A	2.551e^-4	0.755	NON_SYNONYMOUS_CODING CG13056 SPLICE_SITE_REGION CG13056 DOWNSTREAM retinin
2L	7916515	2L_7916515_SNP [dm3] 2L_7916515_SNP [dm6]	A	G	2.555e^-4	0.755	INTRON Snoo
3R	14829284	3R_14829284_SNP [dm3] 3R_19003562_SNP [dm6]	T	C	2.556e^-4	0.755	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21466608	X_21466608_DEL [dm3] X_21595581_DEL [dm6]	TGCGACTAC	T	2.557e^-4	0.755	INTERGENIC
2R	6286242	2R_6286242_SNP [dm3] 2R_10398737_SNP [dm6]	T	G	2.560e^-4	0.755	INTRON CG42732
2R	9598530	2R_9598530_SNP [dm3] 2R_13711025_SNP [dm6]	C	G	2.562e^-4	0.755	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	1845670	2L_1845670_SNP [dm3] 2L_1845670_SNP [dm6]	G	A	2.568e^-4	0.755	INTRON wry
2L	6382701	2L_6382701_SNP [dm3] 2L_6382701_SNP [dm6]	A	C	2.570e^-4	0.755	SYNONYMOUS_CODING CG9507 DOWNSTREAM CG42370 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3662236	X_3662236_SNP [dm3] X_3768203_SNP [dm6]	G	T	2.571e^-4	0.755	INTRON tlk
X	18924400	X_18924400_SNP [dm3] X_19030367_SNP [dm6]	G	C	2.572e^-4	0.755	INTERGENIC
2R	17607835	2R_17607835_SNP [dm3] 2R_21720330_SNP [dm6]	A	T	2.573e^-4	0.755	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	14367065	X_14367065_SNP [dm3] X_14473032_SNP [dm6]	G	T	2.577e^-4	0.755	NON_SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1325145	2L_1325145_SNP [dm3] 2L_1325145_SNP [dm6]	T	A	2.584e^-4	0.755	INTERGENIC
2R	14144692	2R_14144692_SNP [dm3] 2R_18257187_SNP [dm6]	A	G	2.586e^-4	0.755	EXON CR44421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8154090	2L_8154090_SNP [dm3] 2L_8154090_SNP [dm6]	A	T	2.586e^-4	0.755	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13744009	2L_13744009_SNP [dm3] 2L_13744009_SNP [dm6]	C	T	2.587e^-4	0.755	INTERGENIC
2L	1562939	2L_1562939_SNP [dm3] 2L_1562939_SNP [dm6]	G	A	2.592e^-4	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	6385372	2L_6385372_SNP [dm3] 2L_6385372_SNP [dm6]	G	A	2.594e^-4	0.755	SYNONYMOUS_CODING CG42370 INTRON CG42368	TF binding site mE1_TFBS_HSA
2R	3222650	2R_3222650_SNP [dm3] 2R_7335145_SNP [dm6]	C	A	2.597e^-4	0.755	SYNONYMOUS_CODING Dscam1 INTRON Dscam1 EXON CR45129	TF binding site mE1_TFBS_chinmo
2L	14574241	2L_14574241_SNP [dm3] 2L_14574241_SNP [dm6]	C	A	2.597e^-4	0.755	INTERGENIC
3L	17188705	3L_17188705_SNP [dm3] 3L_17195605_SNP [dm6]	T	C	2.609e^-4	0.755	INTRON Rbp6	TF binding site mE1_TFBS_inv
X	13609557	X_13609557_SNP [dm3] X_13715524_SNP [dm6]	G	A	2.609e^-4	0.755	SYNONYMOUS_CODING NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
2L	3412991	2L_3412991_SNP [dm3] 2L_3412991_SNP [dm6]	G	T	2.636e^-4	0.755	INTRON pgant2
3L	2555093	3L_2555093_SNP [dm3] 3L_2555093_SNP [dm6]	G	A	2.638e^-4	0.755	UTR_3_PRIME msn UPSTREAM Spn DOWNSTREAM msn
2L	4504472	2L_4504472_SNP [dm3] 2L_4504472_SNP [dm6]	A	G	2.639e^-4	0.755	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7152628	3L_7152628_SNP [dm3] 3L_7159528_SNP [dm6]	C	G	2.647e^-4	0.755	UTR_3_PRIME Dscam2 DOWNSTREAM CG8620 & 1 other
2L	13893643	2L_13893643_SNP [dm3] 2L_13893643_SNP [dm6]	A	G	2.651e^-4	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	8897509	3L_8897509_SNP [dm3] 3L_8904409_SNP [dm6]	G	A	2.652e^-4	0.755	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2R	3624925	2R_3624925_DEL [dm3] 2R_7737420_DEL [dm6]	TGTATCTGGTATCT...	T	2.653e^-4	0.755	UTR_3_PRIME CG45093 & 1 other DOWNSTREAM CG30497 & 1 other
3L	7755124	3L_7755124_SNP [dm3] 3L_7762024_SNP [dm6]	C	G	2.656e^-4	0.755	SYNONYMOUS_CODING Hn UTR_5_PRIME Hn	TF binding site mE1_TFBS_sens
X	19759785	X_19759785_SNP [dm3] X_19865752_SNP [dm6]	A	T	2.658e^-4	0.755	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
3R	16257306	3R_16257306_SNP [dm3] 3R_20431584_SNP [dm6]	A	G	2.660e^-4	0.755	INTRON Gfrl
2L	11505994	2L_11505994_INS [dm3] 2L_11505994_INS [dm6]	T	TAAGTCTT	2.674e^-4	0.755	INTRON spz4	TF binding site mE1_TFBS_cad
2L	12262995	2L_12262995_SNP [dm3] 2L_12262995_SNP [dm6]	A	T	2.676e^-4	0.755	INTRON aret
2L	4327549	2L_4327549_SNP [dm3] 2L_4327549_SNP [dm6]	T	A	2.676e^-4	0.755	INTRON CG16857
2L	4327554	2L_4327554_SNP [dm3] 2L_4327554_SNP [dm6]	A	T	2.676e^-4	0.755	INTRON CG16857
X	8386342	X_8386342_SNP [dm3] X_8492309_SNP [dm6]	C	T	2.679e^-4	0.755	INTRON CG33181
3L	12918142	3L_12918142_SNP [dm3] 3L_12925042_SNP [dm6]	C	A	2.682e^-4	0.755	INTERGENIC
X	22240772	X_22240772_SNP [dm3] X_22838936_SNP [dm6]	C	T	2.684e^-4	0.755	INTRON fog & 1 other
X	13389891	X_13389891_SNP [dm3] X_13495858_SNP [dm6]	A	T	2.687e^-4	0.755	NON_SYNONYMOUS_CODING Neto
3R	7535131	3R_7535131_SNP [dm3] 3R_11709409_SNP [dm6]	T	G	2.687e^-4	0.755	INTERGENIC
X	2555246	X_2555246_SNP [dm3] X_2661213_SNP [dm6]	C	T	2.687e^-4	0.755	INTRON sgg
X	11618704	X_11618704_SNP [dm3] X_11724671_SNP [dm6]	G	T	2.692e^-4	0.755	UTR_3_PRIME inaF-D & 1 other DOWNSTREAM Tango10 INTRON CG15221
2L	16594086	2L_16594086_SNP [dm3] 2L_16594086_SNP [dm6]	G	A	2.700e^-4	0.755	INTRON CG42389
3L	16743010	3L_16743010_INS [dm3] 3L_16749910_INS [dm6]	A	ACTATTTAT	2.703e^-4	0.755	INTERGENIC
3L	16743019	3L_16743019_INS [dm3] 3L_16749919_INS [dm6]	A	GTTTT	2.703e^-4	0.755	INTERGENIC
X	18924422	X_18924422_SNP [dm3] X_19030389_SNP [dm6]	T	G	2.713e^-4	0.755	INTERGENIC
2L	3313714	2L_3313714_SNP [dm3] 2L_3313714_SNP [dm6]	T	C	2.714e^-4	0.755	SPLICE_SITE_REGION CG3277 INTRON CG3277
2L	13699346	2L_13699346_SNP [dm3] 2L_13699346_SNP [dm6]	G	A	2.715e^-4	0.755	INTRON CG31814
2L	8154777	2L_8154777_SNP [dm3] 2L_8154777_SNP [dm6]	A	G	2.716e^-4	0.755	DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad
X	19136986	X_19136986_SNP [dm3] X_19242953_SNP [dm6]	A	C	2.721e^-4	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16276513	3R_16276513_SNP [dm3] 3R_20450791_SNP [dm6]	C	A	2.722e^-4	0.755	INTRON Gfrl
2R	16414378	2R_16414378_DEL [dm3] 2R_20526873_DEL [dm6]	TT	G	2.723e^-4	0.755	DOWNSTREAM CG13422 INTERGENIC
2R	3466964	2R_3466964_SNP [dm3] 2R_7579459_SNP [dm6]	C	T	2.728e^-4	0.755	INTRON Vps13 EXON CR45130
3R	24189990	3R_24189990_SNP [dm3] 3R_28364268_SNP [dm6]	A	C	2.729e^-4	0.755	INTERGENIC
2L	8159132	2L_8159132_SNP [dm3] 2L_8159132_SNP [dm6]	A	T	2.731e^-4	0.755	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
3L	3153870	3L_3153870_SNP [dm3] 3L_3153870_SNP [dm6]	C	T	2.735e^-4	0.755	UTR_3_PRIME BtbVII INTRON BtbVII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3899187	2L_3899187_SNP [dm3] 2L_3899187_SNP [dm6]	A	C	2.737e^-4	0.755	INTRON capu
X	3447294	X_3447294_DEL [dm3] X_3553261_DEL [dm6]	TTGGCACCCGAGTCAA...	T	2.737e^-4	0.755	INTRON CG32791	TF binding site BDTNP1_TFBS_twi
X	16956591	X_16956591_SNP [dm3] X_17062558_SNP [dm6]	T	C	2.737e^-4	0.755	INTRON CG45002
2L	8310474	2L_8310474_SNP [dm3] 2L_8310474_SNP [dm6]	G	A	2.746e^-4	0.755	NON_SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2R	3178998	2R_3178998_SNP [dm3] 2R_7291493_SNP [dm6]	A	G	2.749e^-4	0.755	INTRON pwn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3611343	3R_3611343_SNP [dm3] 3R_7785621_SNP [dm6]	A	T	2.752e^-4	0.755	DOWNSTREAM CG18748 INTRON CG18745
2R	3177585	2R_3177585_SNP [dm3] 2R_7290080_SNP [dm6]	C	G	2.754e^-4	0.755	INTRON pwn
3L	5008288	3L_5008288_SNP [dm3] 3L_5008288_SNP [dm6]	T	C	2.755e^-4	0.755	INTRON Con
2L	16066891	2L_16066891_SNP [dm3] 2L_16066891_SNP [dm6]	G	A	2.763e^-4	0.755	INTRON beat-Ia
2L	16066900	2L_16066900_SNP [dm3] 2L_16066900_SNP [dm6]	A	G	2.763e^-4	0.755	INTRON beat-Ia
3L	6245483	3L_6245483_INS [dm3] 3L_6252383_INS [dm6]	G	GG	2.768e^-4	0.755	INTRON Best2
2R	18329250	2R_18329250_SNP [dm3] 2R_22441745_SNP [dm6]	T	C	2.769e^-4	0.755	INTERGENIC
2L	1567795	2L_1567795_SNP [dm3] 2L_1567795_SNP [dm6]	A	T	2.770e^-4	0.755	INTRON haf
2L	1876685	2L_1876685_SNP [dm3] 2L_1876685_SNP [dm6]	G	A	2.780e^-4	0.755	INTRON CG31663
2L	3217585	2L_3217585_SNP [dm3] 2L_3217585_SNP [dm6]	G	A	2.790e^-4	0.755	INTERGENIC
2L	7646489	2L_7646489_SNP [dm3] 2L_7646489_SNP [dm6]	T	C	2.796e^-4	0.755	DOWNSTREAM Slob INTRON Slob
2L	18239300	2L_18239300_SNP [dm3] 2L_18239300_SNP [dm6]	T	A	2.796e^-4	0.755	INTRON CG42750
3L	16743005	3L_16743005_SNP [dm3] 3L_16749905_SNP [dm6]	C	A	2.796e^-4	0.755	INTERGENIC
3R	21185264	3R_21185264_SNP [dm3] 3R_25359542_SNP [dm6]	A	T	2.808e^-4	0.755	SYNONYMOUS_CODING CG11913 INTRON Fur1
2L	1361047	2L_1361047_SNP [dm3] 2L_1361047_SNP [dm6]	G	C	2.811e^-4	0.755	INTRON NLaz
2L	19806813	2L_19806813_SNP [dm3] 2L_19806813_SNP [dm6]	A	T	2.814e^-4	0.755	INTRON sick
3R	24189994	3R_24189994_SNP [dm3] 3R_28364272_SNP [dm6]	A	T	2.822e^-4	0.755	INTERGENIC
2L	12263002	2L_12263002_SNP [dm3] 2L_12263002_SNP [dm6]	G	A	2.823e^-4	0.755	INTRON aret
2L	11496873	2L_11496873_SNP [dm3] 2L_11496873_SNP [dm6]	T	A	2.825e^-4	0.755	UTR_3_PRIME CG6488	TF binding site mE1_TFBS_cad
X	18909355	X_18909355_SNP [dm3] X_19015322_SNP [dm6]	G	A	2.826e^-4	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18908409	X_18908409_SNP [dm3] X_19014376_SNP [dm6]	G	A	2.827e^-4	0.755	INTRON CG43759
3L	9919441	3L_9919441_SNP [dm3] 3L_9926341_SNP [dm6]	C	T	2.832e^-4	0.755	INTRON CG34356
3R	20707162	3R_20707162_SNP [dm3] 3R_24881440_SNP [dm6]	C	A	2.833e^-4	0.755	UTR_3_PRIME CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
3L	16742976	3L_16742976_SNP [dm3] 3L_16749876_SNP [dm6]	T	G	2.834e^-4	0.755	INTERGENIC
X	18903759	X_18903759_SNP [dm3] X_19009726_SNP [dm6]	A	T	2.835e^-4	0.755	INTRON CG43759
X	18910161	X_18910161_SNP [dm3] X_19016128_SNP [dm6]	T	A	2.838e^-4	0.755	INTRON CG43759
3L	16713136	3L_16713136_SNP [dm3] 3L_16720036_SNP [dm6]	T	G	2.847e^-4	0.755	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23369800	3R_23369800_SNP [dm3] 3R_27544078_SNP [dm6]	T	C	2.848e^-4	0.755	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	17863834	3R_17863834_SNP [dm3] 3R_22038112_SNP [dm6]	T	G	2.849e^-4	0.755	SYNONYMOUS_CODING pit
X	14438860	X_14438860_SNP [dm3] X_14544827_SNP [dm6]	A	G	2.850e^-4	0.755	INTERGENIC
2R	11144595	2R_11144595_SNP [dm3] 2R_15257090_SNP [dm6]	G	T	2.851e^-4	0.755	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6831642	2L_6831642_SNP [dm3] 2L_6831642_SNP [dm6]	C	T	2.851e^-4	0.755	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	11850097	2R_11850097_SNP [dm3] 2R_15962592_SNP [dm6]	G	A	2.853e^-4	0.755	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	12586120	3L_12586120_SNP [dm3] 3L_12593020_SNP [dm6]	G	A	2.854e^-4	0.755	INTRON ara	TF binding site mE1_TFBS_HSA
X	19136980	X_19136980_SNP [dm3] X_19242947_SNP [dm6]	T	G	2.854e^-4	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136981	X_19136981_INS [dm3] X_19242948_INS [dm6]	T	TCTGCCG	2.854e^-4	0.755	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22240773	X_22240773_SNP [dm3] X_22838937_SNP [dm6]	T	A	2.855e^-4	0.755	INTRON fog & 1 other
X	18908311	X_18908311_SNP [dm3] X_19014278_SNP [dm6]	A	T	2.861e^-4	0.755	INTRON CG43759
2L	14127989	2L_14127989_SNP [dm3] 2L_14127989_SNP [dm6]	T	C	2.862e^-4	0.755	INTERGENIC
3R	20787723	3R_20787723_SNP [dm3] 3R_24962001_SNP [dm6]	G	A	2.862e^-4	0.755	INTERGENIC
3L	1280632	3L_1280632_SNP [dm3] 3L_1280632_SNP [dm6]	G	A	2.864e^-4	0.755	INTRON CG32333
3R	3037393	3R_3037393_SNP [dm3] 3R_7211671_SNP [dm6]	C	A	2.871e^-4	0.755	INTERGENIC
2L	16292842	2L_16292842_SNP [dm3] 2L_16292842_SNP [dm6]	G	T	2.871e^-4	0.755	DOWNSTREAM CG17329 & 1 other INTRON CG13258	TF binding site mE1_TFBS_inv
2R	6699403	2R_6699403_SNP [dm3] 2R_10811898_SNP [dm6]	C	T	2.872e^-4	0.755	SYNONYMOUS_CODING mms4 UPSTREAM CG7637 DOWNSTREAM CG12341	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3470844	2R_3470844_SNP [dm3] 2R_7583339_SNP [dm6]	C	T	2.872e^-4	0.755	INTRON blow
X	14588886	X_14588886_INS [dm3] X_14694853_INS [dm6]	C	CC	2.875e^-4	0.755	INTRON NetB
2L	14093611	2L_14093611_SNP [dm3] 2L_14093611_SNP [dm6]	A	G	2.875e^-4	0.755	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
2L	1886326	2L_1886326_SNP [dm3] 2L_1886326_SNP [dm6]	A	T	2.876e^-4	0.755	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11813852	2L_11813852_SNP [dm3] 2L_11813852_SNP [dm6]	G	T	2.880e^-4	0.755	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1565627	2L_1565627_INS [dm3] 2L_1565627_INS [dm6]	C	CT	2.883e^-4	0.755	INTRON haf
3R	17899492	3R_17899492_SNP [dm3] 3R_22073770_SNP [dm6]	A	C	2.887e^-4	0.755	DOWNSTREAM how INTRON how
2L	3814694	2L_3814694_SNP [dm3] 2L_3814694_SNP [dm6]	A	T	2.892e^-4	0.755	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1444026	3L_1444026_SNP [dm3] 3L_1444026_SNP [dm6]	T	C	2.903e^-4	0.755	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19136918	X_19136918_SNP [dm3] X_19242885_SNP [dm6]	T	A	2.904e^-4	0.755	UPSTREAM CG7889 INTERGENIC
X	19733556	X_19733556_SNP [dm3] X_19839523_SNP [dm6]	A	C	2.916e^-4	0.755	INTRON pico
3L	11175135	3L_11175135_SNP [dm3] 3L_11182035_SNP [dm6]	T	C	2.925e^-4	0.755	INTRON GlcAT-P
2L	4452205	2L_4452205_SNP [dm3] 2L_4452205_SNP [dm6]	A	C	2.925e^-4	0.755	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20598378	3R_20598378_SNP [dm3] 3R_24772656_SNP [dm6]	A	C	2.927e^-4	0.755	INTRON CG42331
X	19136425	X_19136425_SNP [dm3] X_19242392_SNP [dm6]	T	A	2.927e^-4	0.755	UPSTREAM CG14196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12385191	3R_12385191_SNP [dm3] 3R_16559469_SNP [dm6]	A	G	2.928e^-4	0.755	INTRON CG42342
3L	21863030	3L_21863030_SNP [dm3] 3L_21869930_SNP [dm6]	G	A	2.930e^-4	0.755	INTRON mub
2L	4454454	2L_4454454_SNP [dm3] 2L_4454454_SNP [dm6]	G	T	2.933e^-4	0.755	UPSTREAM CG15434 & 1 other DOWNSTREAM Gs1l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	14407392	3R_14407392_SNP [dm3] 3R_18581670_SNP [dm6]	C	T	2.951e^-4	0.755	INTRON fray & 1 other	TF binding site mE1_TFBS_run
2L	14759043	2L_14759043_SNP [dm3] 2L_14759043_SNP [dm6]	A	G	2.960e^-4	0.755	INTERGENIC
X	13446718	X_13446718_SNP [dm3] X_13552685_SNP [dm6]	T	C	2.963e^-4	0.755	UTR_3_PRIME CG11816 DOWNSTREAM CG11816
3L	14851522	3L_14851522_SNP [dm3] 3L_14858422_SNP [dm6]	T	A	2.965e^-4	0.755	INTRON CG17839
2L	5261565	2L_5261565_SNP [dm3] 2L_5261565_SNP [dm6]	T	C	2.967e^-4	0.755	INTRON tkv
3L	6549082	3L_6549082_SNP [dm3] 3L_6555982_SNP [dm6]	A	T	2.975e^-4	0.755	INTRON CG18769	TF binding site mE1_TFBS_inv
X	5058968	X_5058968_SNP [dm3] X_5164935_SNP [dm6]	A	G	2.975e^-4	0.755	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg
2L	1901064	2L_1901064_SNP [dm3] 2L_1901064_SNP [dm6]	G	T	2.984e^-4	0.755	INTRON CG7337
3R	26020722	3R_26020722_SNP [dm3] 3R_30195000_SNP [dm6]	T	C	2.994e^-4	0.755	SYNONYMOUS_CODING CG15531
3R	21122442	3R_21122442_SNP [dm3] 3R_25296720_SNP [dm6]	T	A	2.999e^-4	0.755	NON_SYNONYMOUS_CODING CG31097
3R	15229876	3R_15229876_SNP [dm3] 3R_19404154_SNP [dm6]	T	A	2.999e^-4	0.755	NON_SYNONYMOUS_CODING CG5316 INTRON CG5316	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13975236	3R_13975236_SNP [dm3] 3R_18149514_SNP [dm6]	T	A	3.000e^-4	0.755	INTERGENIC
X	22223718	X_22223718_SNP [dm3] X_22821882_SNP [dm6]	A	G	3.000e^-4	0.755	INTERGENIC	transposable element FlyBase
3R	13324077	3R_13324077_SNP [dm3] 3R_17498355_SNP [dm6]	T	A	3.009e^-4	0.755	UTR_5_PRIME Dscam3
3L	6292481	3L_6292481_SNP [dm3] 3L_6299381_SNP [dm6]	G	T	3.010e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21115147	3R_21115147_SNP [dm3] 3R_25289425_SNP [dm6]	A	T	3.017e^-4	0.755	UPSTREAM CG11893 DOWNSTREAM CG13658 INTERGENIC
2R	11246891	2R_11246891_SNP [dm3] 2R_15359386_SNP [dm6]	A	T	3.020e^-4	0.755	INTRON unc-5
X	4153915	X_4153915_SNP [dm3] X_4259882_SNP [dm6]	C	T	3.021e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21122449	3R_21122449_SNP [dm3] 3R_25296727_SNP [dm6]	G	A	3.028e^-4	0.755	SYNONYMOUS_CODING CG31097
3L	13164034	3L_13164034_SNP [dm3] 3L_13170934_SNP [dm6]	C	A	3.028e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2R	17099998	2R_17099998_SNP [dm3] 2R_21212493_SNP [dm6]	G	A	3.033e^-4	0.755	DOWNSTREAM CG4302 INTRON CG44245
2R	18074130	2R_18074130_SNP [dm3] 2R_22186625_SNP [dm6]	C	T	3.034e^-4	0.755	SYNONYMOUS_CODING Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17715054	3R_17715054_SNP [dm3] 3R_21889332_SNP [dm6]	G	T	3.036e^-4	0.755	UPSTREAM CR43844 INTRON CG6678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3L	3119757	3L_3119757_SNP [dm3] 3L_3119757_SNP [dm6]	A	G	3.046e^-4	0.755	INTRON prominin-like
3R	17863077	3R_17863077_SNP [dm3] 3R_22037355_SNP [dm6]	C	T	3.048e^-4	0.755	SYNONYMOUS_CODING pit DOWNSTREAM scaRNA:MeU5-G38	TF binding site mE1_TFBS_sens
3R	24363634	3R_24363634_SNP [dm3] 3R_28537912_SNP [dm6]	T	G	3.055e^-4	0.755	INTRON Ppn
2L	740699	2L_740699_SNP [dm3] 2L_740699_SNP [dm6]	A	T	3.056e^-4	0.755	INTRON Eaat2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14094594	2L_14094594_SNP [dm3] 2L_14094594_SNP [dm6]	G	A	3.058e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	16518108	X_16518108_SNP [dm3] X_16624075_SNP [dm6]	C	A	3.059e^-4	0.755	SYNONYMOUS_CODING Rok DOWNSTREAM Rok
3L	19456453	3L_19456453_DEL [dm3] 3L_19463353_DEL [dm6]	CC	C	3.060e^-4	0.755	DOWNSTREAM CG14095 INTERGENIC
2L	2501527	2L_2501527_SNP [dm3] 2L_2501527_SNP [dm6]	C	T	3.066e^-4	0.755	INTERGENIC
X	19138723	X_19138723_SNP [dm3] X_19244690_SNP [dm6]	C	T	3.066e^-4	0.755	DOWNSTREAM CG7992 INTRON CG7889	TF binding site mE1_TFBS_chinmo
3L	21621086	3L_21621086_SNP [dm3] 3L_21627986_SNP [dm6]	C	T	3.066e^-4	0.755	SYNONYMOUS_CODING CG11306 DOWNSTREAM MED1
3L	11303047	3L_11303047_SNP [dm3] 3L_11309947_SNP [dm6]	G	T	3.068e^-4	0.755	INTERGENIC
2L	18964614	2L_18964614_SNP [dm3] 2L_18964614_SNP [dm6]	C	G	3.070e^-4	0.755	INTRON Nak	TF binding site mE1_TFBS_HSA
3R	13537471	3R_13537471_SNP [dm3] 3R_17711749_SNP [dm6]	T	C	3.070e^-4	0.755	INTRON osa	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22077677	3R_22077677_SNP [dm3] 3R_26251955_SNP [dm6]	T	A	3.074e^-4	0.755	EXON CR42745
2R	16564922	2R_16564922_SNP [dm3] 2R_20677417_SNP [dm6]	G	T	3.075e^-4	0.755	INTERGENIC
3L	16743014	3L_16743014_SNP [dm3] 3L_16749914_SNP [dm6]	T	G	3.075e^-4	0.755	INTERGENIC
3R	25613985	3R_25613985_SNP [dm3] 3R_29788263_SNP [dm6]	C	T	3.077e^-4	0.755	UPSTREAM kay INTRON kay
3L	13880058	3L_13880058_SNP [dm3] 3L_13886958_SNP [dm6]	C	A	3.082e^-4	0.755	INTRON dysc	TF binding site mE1_TFBS_cad
2L	11497953	2L_11497953_SNP [dm3] 2L_11497953_SNP [dm6]	G	T	3.083e^-4	0.755	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3177597	2R_3177597_SNP [dm3] 2R_7290092_SNP [dm6]	T	G	3.083e^-4	0.755	INTRON pwn
3R	17379243	3R_17379243_SNP [dm3] 3R_21553521_SNP [dm6]	T	C	3.092e^-4	0.755	INTRON slou
X	9407296	X_9407296_SNP [dm3] X_9513263_SNP [dm6]	A	C	3.093e^-4	0.755	INTRON CG32700
3R	13333214	3R_13333214_SNP [dm3] 3R_17507492_SNP [dm6]	A	T	3.100e^-4	0.755	INTERGENIC
3R	10146989	3R_10146989_SNP [dm3] 3R_14321267_SNP [dm6]	T	G	3.102e^-4	0.755	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
2L	5886853	2L_5886853_SNP [dm3] 2L_5886853_SNP [dm6]	C	G	3.102e^-4	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
X	5059047	X_5059047_SNP [dm3] X_5165014_SNP [dm6]	T	C	3.103e^-4	0.755	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg
3L	4276107	3L_4276107_SNP [dm3] 3L_4276107_SNP [dm6]	A	C	3.107e^-4	0.755	SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
3R	25534777	3R_25534777_SNP [dm3] 3R_29709055_SNP [dm6]	T	C	3.111e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	13893712	2L_13893712_DEL [dm3] 2L_13893712_DEL [dm6]	TAAAGTTT	T	3.115e^-4	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17102052	2R_17102052_SNP [dm3] 2R_21214547_SNP [dm6]	G	T	3.125e^-4	0.755	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG15661
3L	9366347	3L_9366347_SNP [dm3] 3L_9373247_SNP [dm6]	A	C	3.126e^-4	0.755	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10647854	3L_10647854_SNP [dm3] 3L_10654754_SNP [dm6]	T	C	3.128e^-4	0.755	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
X	19135617	X_19135617_SNP [dm3] X_19241584_SNP [dm6]	G	A	3.128e^-4	0.755	UTR_5_PRIME CG14196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18264949	2R_18264949_SNP [dm3] 2R_22377444_SNP [dm6]	A	G	3.134e^-4	0.755	SYNONYMOUS_CODING Rtf1 DOWNSTREAM CR45327
3L	11030422	3L_11030422_SNP [dm3] 3L_11037322_SNP [dm6]	A	T	3.140e^-4	0.755	INTRON CG43693
3L	4636054	3L_4636054_SNP [dm3] 3L_4636054_SNP [dm6]	C	A	3.140e^-4	0.755	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2L	13952604	2L_13952604_SNP [dm3] 2L_13952604_SNP [dm6]	C	G	3.145e^-4	0.755	INTRON Ance-3
3L	5974116	3L_5974116_SNP [dm3] 3L_5981016_SNP [dm6]	T	A	3.157e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	14244761	X_14244761_SNP [dm3] X_14350728_SNP [dm6]	C	T	3.157e^-4	0.755	INTRON dpr8
3R	10139903	3R_10139903_SNP [dm3] 3R_14314181_SNP [dm6]	T	C	3.163e^-4	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
2R	16094145	2R_16094145_SNP [dm3] 2R_20206640_SNP [dm6]	G	A	3.166e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10928335	2L_10928335_SNP [dm3] 2L_10928335_SNP [dm6]	G	A	3.167e^-4	0.755	INTRON dpr2
2R	16524082	2R_16524082_SNP [dm3] 2R_20636577_SNP [dm6]	T	C	3.173e^-4	0.755	SYNONYMOUS_CODING CG13436 INTRON rig
2L	990289	2L_990289_SNP [dm3] 2L_990289_SNP [dm6]	G	C	3.178e^-4	0.755	EXON CR44801	TF binding site mE1_TFBS_chinmo
3R	20393056	3R_20393056_SNP [dm3] 3R_24567334_SNP [dm6]	T	C	3.180e^-4	0.755	INTRON CG13624	TF binding site mE1_TFBS_cnc
3R	15432037	3R_15432037_SNP [dm3] 3R_19606315_SNP [dm6]	G	C	3.184e^-4	0.755	UTR_3_PRIME CG7342 UPSTREAM CG17751
2R	11052302	2R_11052302_SNP [dm3] 2R_15164797_SNP [dm6]	G	A	3.187e^-4	0.755	UPSTREAM igl INTRON igl
2L	13893671	2L_13893671_SNP [dm3] 2L_13893671_SNP [dm6]	T	A	3.188e^-4	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	21899993	3L_21899993_INS [dm3] 3L_21906893_INS [dm6]	A	AATA	3.190e^-4	0.755	INTRON mub
X	4443457	X_4443457_SNP [dm3] X_4549424_SNP [dm6]	C	T	3.194e^-4	0.755	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14327985	3R_14327985_SNP [dm3] 3R_18502263_SNP [dm6]	G	A	3.194e^-4	0.755	INTRON fru
X	3151744	X_3151744_SNP [dm3] X_3257711_SNP [dm6]	C	G	3.195e^-4	0.755	INTRON dnc
2R	4583015	2R_4583015_SNP [dm3] 2R_8695510_SNP [dm6]	A	C	3.200e^-4	0.755	UPSTREAM CG8738 INTRON CG8586
3L	10598174	3L_10598174_DEL [dm3] 3L_10605074_DEL [dm6]	AAAAAA	G	3.207e^-4	0.755	INTERGENIC
2R	15466162	2R_15466162_SNP [dm3] 2R_19578657_SNP [dm6]	C	T	3.209e^-4	0.755	INTRON sm
3R	5869561	3R_5869561_SNP [dm3] 3R_10043839_SNP [dm6]	T	G	3.224e^-4	0.755	SYNONYMOUS_CODING CG3909 UPSTREAM Mical DOWNSTREAM CG11722	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12601916	2R_12601916_SNP [dm3] 2R_16714411_SNP [dm6]	G	A	3.231e^-4	0.755	INTRON CG30463
X	15113264	X_15113264_SNP [dm3] X_15219231_SNP [dm6]	C	G	3.235e^-4	0.755	INTERGENIC
3L	6654819	3L_6654819_SNP [dm3] 3L_6661719_SNP [dm6]	T	G	3.235e^-4	0.755	INTERGENIC
2L	7916066	2L_7916066_SNP [dm3] 2L_7916066_SNP [dm6]	A	G	3.236e^-4	0.755	INTRON Snoo
2L	6490990	2L_6490990_SNP [dm3] 2L_6490990_SNP [dm6]	T	C	3.241e^-4	0.755	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14095103	2L_14095103_SNP [dm3] 2L_14095103_SNP [dm6]	T	A	3.244e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	16774317	3L_16774317_INS [dm3] 3L_16781217_INS [dm6]	T	TAATT	3.244e^-4	0.755	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
2L	14276372	2L_14276372_SNP [dm3] 2L_14276372_SNP [dm6]	T	C	3.247e^-4	0.755	UPSTREAM CG32971 INTRON wb & 1 other
3R	18712254	3R_18712254_SNP [dm3] 3R_22886532_SNP [dm6]	C	G	3.250e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13354118	3R_13354118_SNP [dm3] 3R_17528396_SNP [dm6]	A	G	3.253e^-4	0.755	INTERGENIC
X	22222921	X_22222921_SNP [dm3] X_22821085_SNP [dm6]	T	C	3.253e^-4	0.755	INTERGENIC
3L	13973074	3L_13973074_SNP [dm3] 3L_13979974_SNP [dm6]	A	T	3.257e^-4	0.755	INTRON CG17364
X	17316791	X_17316791_SNP [dm3] X_17422758_SNP [dm6]	A	C	3.263e^-4	0.755	UTR_3_PRIME CG12994 UPSTREAM CG8611 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17378883	3R_17378883_SNP [dm3] 3R_21553161_SNP [dm6]	G	T	3.270e^-4	0.755	INTRON slou
3L	16743001	3L_16743001_INS [dm3] 3L_16749901_INS [dm6]	T	TTTGACATAGTAAATAGCAA...	3.272e^-4	0.755	INTERGENIC
3L	16743003	3L_16743003_SNP [dm3] 3L_16749903_SNP [dm6]	C	G	3.272e^-4	0.755	INTERGENIC
2L	6385351	2L_6385351_SNP [dm3] 2L_6385351_SNP [dm6]	C	T	3.274e^-4	0.755	SYNONYMOUS_CODING CG42370 INTRON CG42368	TF binding site mE1_TFBS_HSA
X	19759872	X_19759872_SNP [dm3] X_19865839_SNP [dm6]	G	A	3.274e^-4	0.755	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15027322	3R_15027322_SNP [dm3] 3R_19201600_SNP [dm6]	C	A	3.275e^-4	0.755	DOWNSTREAM CG31475 INTERGENIC
2R	13935991	2R_13935991_SNP [dm3] 2R_18048486_SNP [dm6]	T	C	3.280e^-4	0.755	SYNONYMOUS_CODING CG34005 DOWNSTREAM CG14495	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	19733517	X_19733517_SNP [dm3] X_19839484_SNP [dm6]	T	C	3.285e^-4	0.755	INTRON pico
2R	6733113	2R_6733113_SNP [dm3] 2R_10845608_SNP [dm6]	G	A	3.286e^-4	0.755	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8513148	2R_8513148_SNP [dm3] 2R_12625643_SNP [dm6]	A	C	3.293e^-4	0.755	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
2R	5811781	2R_5811781_SNP [dm3] 2R_9924276_SNP [dm6]	A	T	3.314e^-4	0.755	INTRON Mef2
2L	13048509	2L_13048509_SNP [dm3] 2L_13048509_SNP [dm6]	A	T	3.320e^-4	0.755	INTRON CG9932
3R	24876040	3R_24876040_SNP [dm3] 3R_29050318_SNP [dm6]	C	T	3.324e^-4	0.755	SYNONYMOUS_CODING CG11837 UPSTREAM CG11841	TF binding site mE1_TFBS_HSA
2L	1014756	2L_1014756_SNP [dm3] 2L_1014756_SNP [dm6]	A	T	3.326e^-4	0.755	INTRON IA-2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1719758	2L_1719758_SNP [dm3] 2L_1719758_SNP [dm6]	G	A	3.327e^-4	0.755	INTRON Rim2
2L	8129833	2L_8129833_SNP [dm3] 2L_8129833_SNP [dm6]	A	T	3.333e^-4	0.755	INTRON CG8668
3R	9575165	3R_9575165_SNP [dm3] 3R_13749443_SNP [dm6]	G	A	3.337e^-4	0.755	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22845655	3R_22845655_INS [dm3] 3R_27019933_INS [dm6]	A	AA	3.338e^-4	0.755	UPSTREAM CG17191 DOWNSTREAM CG6283 INTRON RYa-R
3R	6138530	3R_6138530_SNP [dm3] 3R_10312808_SNP [dm6]	C	T	3.342e^-4	0.755	NON_SYNONYMOUS_CODING Bruce
3R	6114716	3R_6114716_SNP [dm3] 3R_10288994_SNP [dm6]	G	T	3.362e^-4	0.755	INTRON CG43143	TF binding site mE1_TFBS_inv
2L	14277449	2L_14277449_SNP [dm3] 2L_14277449_SNP [dm6]	A	T	3.364e^-4	0.755	UTR_5_PRIME CG32971 INTRON wb & 1 other
3L	12060310	3L_12060310_DEL [dm3] 3L_12067210_DEL [dm6]	GAG	G	3.365e^-4	0.755	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk
3L	11663605	3L_11663605_SNP [dm3] 3L_11670505_SNP [dm6]	C	T	3.369e^-4	0.755	INTRON CG32085
3R	24673658	3R_24673658_SNP [dm3] 3R_28847936_SNP [dm6]	T	C	3.371e^-4	0.755	INTRON spg
2L	2417755	2L_2417755_SNP [dm3] 2L_2417755_SNP [dm6]	A	G	3.374e^-4	0.755	SPLICE_SITE_REGION CG34448 DOWNSTREAM CG34447 INTRON CG34448
2L	14094598	2L_14094598_SNP [dm3] 2L_14094598_SNP [dm6]	T	C	3.374e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5971647	3L_5971647_SNP [dm3] 3L_5978547_SNP [dm6]	A	T	3.389e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22776141	3R_22776141_SNP [dm3] 3R_26950419_SNP [dm6]	T	A	3.390e^-4	0.755	UTR_3_PRIME CG6330 DOWNSTREAM CG18472	TF binding site mE1_TFBS_cad
2R	8514399	2R_8514399_SNP [dm3] 2R_12626894_SNP [dm6]	T	C	3.390e^-4	0.755	SYNONYMOUS_CODING CG17760
2L	19944020	2L_19944020_SNP [dm3] 2L_19944020_SNP [dm6]	C	T	3.394e^-4	0.755	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4446669	2L_4446669_SNP [dm3] 2L_4446669_SNP [dm6]	T	C	3.400e^-4	0.755	UTR_3_PRIME Elp3 DOWNSTREAM MFS18	TF binding site mE1_TFBS_cad
2R	9020416	2R_9020416_SNP [dm3] 2R_13132911_SNP [dm6]	A	T	3.407e^-4	0.755	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	10925173	2L_10925173_SNP [dm3] 2L_10925173_SNP [dm6]	G	T	3.408e^-4	0.755	INTRON dpr2
2R	9460400	2R_9460400_SNP [dm3] 2R_13572895_SNP [dm6]	G	T	3.410e^-4	0.755	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
2R	2991459	2R_2991459_SNP [dm3] 2R_7103954_SNP [dm6]	A	C	3.413e^-4	0.755	INTRON esn
3R	21671567	3R_21671567_SNP [dm3] 3R_25845845_SNP [dm6]	C	G	3.416e^-4	0.755	UPSTREAM CR45655 EXON CR45654
3R	17547925	3R_17547925_SNP [dm3] 3R_21722203_SNP [dm6]	C	G	3.417e^-4	0.755	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17288927	3R_17288927_SNP [dm3] 3R_21463205_SNP [dm6]	C	T	3.418e^-4	0.755	INTERGENIC
2R	8514952	2R_8514952_SNP [dm3] 2R_12627447_SNP [dm6]	G	T	3.422e^-4	0.755	INTRON CG17760
2L	6380542	2L_6380542_SNP [dm3] 2L_6380542_SNP [dm6]	C	G	3.422e^-4	0.755	UPSTREAM CG9507 INTRON CG42368
2R	18313241	2R_18313241_SNP [dm3] 2R_22425736_SNP [dm6]	C	A	3.422e^-4	0.755	UTR_3_PRIME CG10344 DOWNSTREAM rad50
3L	11663546	3L_11663546_SNP [dm3] 3L_11670446_SNP [dm6]	T	C	3.431e^-4	0.755	INTRON CG32085
2R	9598531	2R_9598531_SNP [dm3] 2R_13711026_SNP [dm6]	A	G	3.440e^-4	0.755	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	16761878	3R_16761878_SNP [dm3] 3R_20936156_SNP [dm6]	T	C	3.440e^-4	0.755	INTRON CG31191	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9456227	2R_9456227_SNP [dm3] 2R_13568722_SNP [dm6]	A	T	3.441e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19524036	3L_19524036_SNP [dm3] 3L_19530936_SNP [dm6]	G	C	3.443e^-4	0.755	INTERGENIC
2L	6283207	2L_6283207_SNP [dm3] 2L_6283207_SNP [dm6]	T	A	3.445e^-4	0.755	INTRON Ddr
3R	13694341	3R_13694341_SNP [dm3] 3R_17868619_SNP [dm6]	C	G	3.445e^-4	0.755	NON_SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	14779776	3R_14779776_DEL [dm3] 3R_18954054_DEL [dm6]	CA	T	3.447e^-4	0.755	INTRON CG42613 & 1 other
2L	1240429	2L_1240429_SNP [dm3] 2L_1240429_SNP [dm6]	A	G	3.451e^-4	0.755	NON_SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	14095017	2L_14095017_SNP [dm3] 2L_14095017_SNP [dm6]	G	A	3.456e^-4	0.755	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	13164045	3L_13164045_SNP [dm3] 3L_13170945_SNP [dm6]	T	C	3.459e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2R	17358461	2R_17358461_SNP [dm3] 2R_21470956_SNP [dm6]	T	G	3.463e^-4	0.755	INTRON Sdc
3R	10997291	3R_10997291_SNP [dm3] 3R_15171569_SNP [dm6]	A	T	3.467e^-4	0.755	INTRON Gyc88E & 1 other
3L	12165796	3L_12165796_SNP [dm3] 3L_12172696_SNP [dm6]	G	A	3.471e^-4	0.755	INTRON Rh7
2R	4463368	2R_4463368_SNP [dm3] 2R_8575863_SNP [dm6]	G	C	3.476e^-4	0.755	INTRON CG42326
3R	19656969	3R_19656969_SNP [dm3] 3R_23831247_SNP [dm6]	T	C	3.478e^-4	0.755	INTRON CG34355
2R	8558157	2R_8558157_SNP [dm3] 2R_12670652_SNP [dm6]	T	G	3.481e^-4	0.755	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv
3R	11695487	3R_11695487_SNP [dm3] 3R_15869765_SNP [dm6]	T	C	3.482e^-4	0.755	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1837052	3L_1837052_SNP [dm3] 3L_1837052_SNP [dm6]	T	C	3.484e^-4	0.755	INTERGENIC
3R	25676357	3R_25676357_SNP [dm3] 3R_29850635_SNP [dm6]	C	T	3.490e^-4	0.755	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	11664730	2R_11664730_SNP [dm3] 2R_15777225_SNP [dm6]	G	T	3.493e^-4	0.755	NON_SYNONYMOUS_CODING Zasp52
3L	9649372	3L_9649372_SNP [dm3] 3L_9656272_SNP [dm6]	T	C	3.495e^-4	0.755	INTRON fry & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8312014	2L_8312014_SNP [dm3] 2L_8312014_SNP [dm6]	G	A	3.502e^-4	0.756	UPSTREAM CG7810 INTRON CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19828650	2L_19828650_SNP [dm3] 2L_19828650_SNP [dm6]	A	G	3.521e^-4	0.758	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
3R	10736936	3R_10736936_SNP [dm3] 3R_14911214_SNP [dm6]	A	G	3.527e^-4	0.758	INTERGENIC
3L	11377195	3L_11377195_SNP [dm3] 3L_11384095_SNP [dm6]	C	A	3.531e^-4	0.758	EXON CR42755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10728842	2L_10728842_INS [dm3] 2L_10728842_INS [dm6]	C	CTGGCATTGC	3.533e^-4	0.758	UPSTREAM CG6443 DOWNSTREAM CG6431 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14160874	3R_14160874_SNP [dm3] 3R_18335152_SNP [dm6]	A	G	3.533e^-4	0.758	INTRON CG15803
3L	7475497	3L_7475497_SNP [dm3] 3L_7482397_SNP [dm6]	G	A	3.552e^-4	0.761	INTERGENIC
X	19759964	X_19759964_DEL [dm3] X_19865931_DEL [dm6]	TACTTATTTACTTA...	T	3.556e^-4	0.761	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13850407	2L_13850407_SNP [dm3] 2L_13850407_SNP [dm6]	T	G	3.559e^-4	0.761	DOWNSTREAM CG7968 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3418136	2L_3418136_SNP [dm3] 2L_3418136_SNP [dm6]	A	G	3.572e^-4	0.761	DOWNSTREAM CG31952 INTRON pgant2
X	5874780	X_5874780_SNP [dm3] X_5980747_SNP [dm6]	G	A	3.574e^-4	0.761	INTRON Grip
3L	16742986	3L_16742986_SNP [dm3] 3L_16749886_SNP [dm6]	A	G	3.584e^-4	0.761	INTERGENIC
3R	17548010	3R_17548010_SNP [dm3] 3R_21722288_SNP [dm6]	T	G	3.585e^-4	0.761	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16257237	3R_16257237_DEL [dm3] 3R_20431515_DEL [dm6]	TG	T	3.591e^-4	0.761	INTRON Gfrl
2L	14095031	2L_14095031_SNP [dm3] 2L_14095031_SNP [dm6]	C	T	3.593e^-4	0.761	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	19386774	2L_19386774_DEL [dm3] 2L_19386774_DEL [dm6]	ACTTCCGGTCACCTTTG...	A	3.607e^-4	0.761	UPSTREAM fon DOWNSTREAM CG17549 INTERGENIC
3R	25959316	3R_25959316_SNP [dm3] 3R_30133594_SNP [dm6]	C	T	3.607e^-4	0.761	SYNONYMOUS_CODING Tpi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19733516	X_19733516_SNP [dm3] X_19839483_SNP [dm6]	G	A	3.617e^-4	0.761	INTRON pico
2L	13893684	2L_13893684_SNP [dm3] 2L_13893684_SNP [dm6]	G	T	3.627e^-4	0.761	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	18907515	X_18907515_SNP [dm3] X_19013482_SNP [dm6]	T	A	3.630e^-4	0.761	INTRON CG43759	TF binding site BDTNP1_TFBS_sna
3L	11142061	3L_11142061_SNP [dm3] 3L_11148961_SNP [dm6]	C	T	3.634e^-4	0.761	DOWNSTREAM CG6216 INTRON CG32082
2L	8011014	2L_8011014_SNP [dm3] 2L_8011014_SNP [dm6]	T	C	3.641e^-4	0.761	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	17379267	3R_17379267_SNP [dm3] 3R_21553545_SNP [dm6]	C	T	3.642e^-4	0.761	INTRON slou
2L	1349916	2L_1349916_SNP [dm3] 2L_1349916_SNP [dm6]	G	C	3.646e^-4	0.761	INTERGENIC
3L	1837085	3L_1837085_SNP [dm3] 3L_1837085_SNP [dm6]	C	A	3.668e^-4	0.761	INTERGENIC
3L	9913043	3L_9913043_SNP [dm3] 3L_9919943_SNP [dm6]	C	A	3.671e^-4	0.761	INTRON CG34356
2L	8427245	2L_8427245_SNP [dm3] 2L_8427245_SNP [dm6]	G	A	3.673e^-4	0.761	NON_SYNONYMOUS_CODING Akap200	TF binding site mE1_TFBS_cad
3R	16275842	3R_16275842_SNP [dm3] 3R_20450120_SNP [dm6]	T	A	3.675e^-4	0.761	UPSTREAM Gfrl INTRON Gfrl	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17076327	2R_17076327_SNP [dm3] 2R_21188822_SNP [dm6]	C	A	3.689e^-4	0.761	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3L	1280643	3L_1280643_SNP [dm3] 3L_1280643_SNP [dm6]	A	G	3.711e^-4	0.761	INTRON CG32333
2R	12111087	2R_12111087_SNP [dm3] 2R_16223582_SNP [dm6]	A	T	3.718e^-4	0.761	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA
3L	10647828	3L_10647828_SNP [dm3] 3L_10654728_SNP [dm6]	G	A	3.719e^-4	0.761	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2L	1553730	2L_1553730_SNP [dm3] 2L_1553730_SNP [dm6]	G	A	3.724e^-4	0.761	INTERGENIC
3R	15554134	3R_15554134_SNP [dm3] 3R_19728412_SNP [dm6]	G	T	3.727e^-4	0.761	INTERGENIC
2L	1701480	2L_1701480_SNP [dm3] 2L_1701480_SNP [dm6]	G	T	3.738e^-4	0.761	UTR_3_PRIME chinmo
3L	1253282	3L_1253282_SNP [dm3] 3L_1253282_SNP [dm6]	T	A	3.738e^-4	0.761	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14288384	2L_14288384_SNP [dm3] 2L_14288384_SNP [dm6]	C	T	3.747e^-4	0.761	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14785167	X_14785167_SNP [dm3] X_14891134_SNP [dm6]	A	G	3.748e^-4	0.761	INTRON Flo2 & 1 other
3R	19458029	3R_19458029_SNP [dm3] 3R_23632307_SNP [dm6]	T	A	3.759e^-4	0.761	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	7003912	2R_7003912_SNP [dm3] 2R_11116407_SNP [dm6]	G	A	3.763e^-4	0.761	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1794077	2L_1794077_SNP [dm3] 2L_1794077_SNP [dm6]	G	T	3.763e^-4	0.761	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
2L	7968012	2L_7968012_SNP [dm3] 2L_7968012_SNP [dm6]	C	T	3.773e^-4	0.761	INTRON Snoo
2R	12633576	2R_12633576_SNP [dm3] 2R_16746071_SNP [dm6]	A	T	3.779e^-4	0.761	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19143376	X_19143376_SNP [dm3] X_19249343_SNP [dm6]	A	G	3.781e^-4	0.761	INTRON Hs3st-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27277875	3R_27277875_SNP [dm3] 3R_31452153_SNP [dm6]	T	C	3.786e^-4	0.761	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	15528182	2L_15528182_SNP [dm3] 2L_15528182_SNP [dm6]	G	T	3.788e^-4	0.761	INTERGENIC
X	16007602	X_16007602_SNP [dm3] X_16113569_SNP [dm6]	C	T	3.791e^-4	0.761	INTERGENIC
2R	20322072	2R_20322072_SNP [dm3] 2R_24434549_SNP [dm6]	C	T	3.794e^-4	0.761	INTERGENIC
2R	17319361	2R_17319361_SNP [dm3] 2R_21431856_SNP [dm6]	A	T	3.795e^-4	0.761	INTRON Sdc
2R	13231400	2R_13231400_DEL [dm3] 2R_17343895_DEL [dm6]	GTG	G	3.795e^-4	0.761	INTRON mbl
2L	8312010	2L_8312010_SNP [dm3] 2L_8312010_SNP [dm6]	T	C	3.796e^-4	0.761	UPSTREAM CG7810 INTRON CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3484434	2R_3484434_SNP [dm3] 2R_7596929_SNP [dm6]	A	T	3.798e^-4	0.761	INTRON CG1358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10997561	3L_10997561_SNP [dm3] 3L_11004461_SNP [dm6]	C	T	3.800e^-4	0.761	INTRON klu
X	18908124	X_18908124_SNP [dm3] X_19014091_SNP [dm6]	C	T	3.800e^-4	0.761	INTRON CG43759
X	19733502	X_19733502_INS [dm3] X_19839469_INS [dm6]	G	GAT	3.802e^-4	0.761	INTRON pico
3R	15432039	3R_15432039_SNP [dm3] 3R_19606317_SNP [dm6]	C	G	3.807e^-4	0.761	UTR_3_PRIME CG7342 UPSTREAM CG17751
3R	20393480	3R_20393480_SNP [dm3] 3R_24567758_SNP [dm6]	A	G	3.808e^-4	0.761	INTRON CG13624
3R	16257233	3R_16257233_DEL [dm3] 3R_20431511_DEL [dm6]	AA	A	3.809e^-4	0.761	INTRON Gfrl
2L	2909876	2L_2909876_SNP [dm3] 2L_2909876_SNP [dm6]	G	C	3.811e^-4	0.761	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3929695	2L_3929695_SNP [dm3] 2L_3929695_SNP [dm6]	A	G	3.812e^-4	0.761	INTRON fred
2R	10836868	2R_10836868_SNP [dm3] 2R_14949363_SNP [dm6]	T	C	3.812e^-4	0.761	INTRON aPKC
X	18918465	X_18918465_SNP [dm3] X_19024432_SNP [dm6]	T	A	3.814e^-4	0.761	INTRON CG43759
2L	14420129	2L_14420129_SNP [dm3] 2L_14420129_SNP [dm6]	A	G	3.815e^-4	0.761	INTERGENIC
X	15313066	X_15313066_SNP [dm3] X_15419033_SNP [dm6]	G	T	3.836e^-4	0.761	INTRON Cngl
2L	7916472	2L_7916472_SNP [dm3] 2L_7916472_SNP [dm6]	T	C	3.840e^-4	0.761	INTRON Snoo
3L	21885452	3L_21885452_SNP [dm3] 3L_21892352_SNP [dm6]	G	A	3.840e^-4	0.761	INTRON mub	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14748028	X_14748028_SNP [dm3] X_14853995_SNP [dm6]	G	T	3.847e^-4	0.761	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	13016760	3L_13016760_SNP [dm3] 3L_13023660_SNP [dm6]	T	C	3.851e^-4	0.761	UPSTREAM AdenoK & 1 other DOWNSTREAM snoRNA:Me28S-A774b INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8616765	2R_8616765_SNP [dm3] 2R_12729260_SNP [dm6]	C	G	3.852e^-4	0.761	INTRON CG42663
X	4609187	X_4609187_SNP [dm3] X_4715154_SNP [dm6]	C	T	3.853e^-4	0.761	INTRON Proc-R
3R	16257217	3R_16257217_DEL [dm3] 3R_20431495_DEL [dm6]	TGTAATTGGAT...	A	3.853e^-4	0.761	INTRON Gfrl
X	5328786	X_5328786_SNP [dm3] X_5434753_SNP [dm6]	C	T	3.858e^-4	0.761	INTRON CR44471
2R	10289459	2R_10289459_SNP [dm3] 2R_14401954_SNP [dm6]	A	G	3.861e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9456291	2R_9456291_SNP [dm3] 2R_13568786_SNP [dm6]	A	C	3.865e^-4	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
2L	13416953	2L_13416953_SNP [dm3] 2L_13416953_SNP [dm6]	A	T	3.866e^-4	0.761	INTRON CG43850 & 1 other
X	18915189	X_18915189_INS [dm3] X_19021156_INS [dm6]	C	CATTTGC	3.868e^-4	0.761	INTRON CG43759	TF binding site mE1_TFBS_HSA
3R	18052274	3R_18052274_SNP [dm3] 3R_22226552_SNP [dm6]	T	C	3.870e^-4	0.761	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15166093	X_15166093_SNP [dm3] X_15272060_SNP [dm6]	C	A	3.870e^-4	0.761	UTR_5_PRIME CG9106
X	19137675	X_19137675_SNP [dm3] X_19243642_SNP [dm6]	T	C	3.871e^-4	0.761	UTR_5_PRIME CG7889	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	13935674	2R_13935674_SNP [dm3] 2R_18048169_SNP [dm6]	G	C	3.874e^-4	0.761	NON_SYNONYMOUS_CODING CG34005 SPLICE_SITE_REGION CG34005 UPSTREAM CG5767 DOWNSTREAM CG14495	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7350537	3L_7350537_SNP [dm3] 3L_7357437_SNP [dm6]	G	C	3.874e^-4	0.761	UTR_3_PRIME pst UPSTREAM CTCF
3L	21859006	3L_21859006_SNP [dm3] 3L_21865906_SNP [dm6]	C	G	3.878e^-4	0.761	INTRON mub
3R	16257232	3R_16257232_SNP [dm3] 3R_20431510_SNP [dm6]	A	C	3.881e^-4	0.761	INTRON Gfrl
2R	3470289	2R_3470289_SNP [dm3] 2R_7582784_SNP [dm6]	C	A	3.882e^-4	0.761	NON_SYNONYMOUS_CODING blow	TF binding site mE1_TFBS_chinmo
2L	8654582	2L_8654582_INS [dm3] 2L_8654582_INS [dm6]	T	TGTTCAGGAA	3.885e^-4	0.761	INTRON Sema-1a
2R	18392050	2R_18392050_SNP [dm3] 2R_22504545_SNP [dm6]	G	A	3.897e^-4	0.761	INTRON px
2R	17565827	2R_17565827_SNP [dm3] 2R_21678322_SNP [dm6]	A	C	3.900e^-4	0.761	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22223709	X_22223709_SNP [dm3] X_22821873_SNP [dm6]	C	T	3.908e^-4	0.761	INTERGENIC	transposable element FlyBase
3L	2697904	3L_2697904_SNP [dm3] 3L_2697904_SNP [dm6]	C	G	3.916e^-4	0.761	UTR_5_PRIME Fife
3R	25530605	3R_25530605_SNP [dm3] 3R_29704883_SNP [dm6]	G	A	3.920e^-4	0.761	INTERGENIC
3R	26119221	3R_26119221_SNP [dm3] 3R_30293499_SNP [dm6]	G	T	3.922e^-4	0.761	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	19656979	3R_19656979_SNP [dm3] 3R_23831257_SNP [dm6]	C	T	3.922e^-4	0.761	INTRON CG34355
2L	2908452	2L_2908452_SNP [dm3] 2L_2908452_SNP [dm6]	T	C	3.925e^-4	0.761	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3857445	2L_3857445_INS [dm3] 2L_3857445_INS [dm6]	G	GGCCGAATC	3.930e^-4	0.761	UPSTREAM CR45450 INTERGENIC
2L	2516673	2L_2516673_SNP [dm3] 2L_2516673_SNP [dm6]	A	G	3.931e^-4	0.761	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14406564	2R_14406564_SNP [dm3] 2R_18519059_SNP [dm6]	T	A	3.937e^-4	0.761	INTRON CG43066	TF binding site mE1_TFBS_inv
3L	12622005	3L_12622005_SNP [dm3] 3L_12628905_SNP [dm6]	C	A	3.937e^-4	0.761	INTRON CR32111
2L	14095019	2L_14095019_SNP [dm3] 2L_14095019_SNP [dm6]	T	A	3.938e^-4	0.761	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14095029	2L_14095029_SNP [dm3] 2L_14095029_SNP [dm6]	A	G	3.938e^-4	0.761	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	9456213	2R_9456213_SNP [dm3] 2R_13568708_SNP [dm6]	T	C	3.939e^-4	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
2L	14158754	2L_14158754_SNP [dm3] 2L_14158754_SNP [dm6]	A	G	3.940e^-4	0.761	SYNONYMOUS_CODING CG17341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17741826	2R_17741826_SNP [dm3] 2R_21854321_SNP [dm6]	C	T	3.944e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8654974	2L_8654974_SNP [dm3] 2L_8654974_SNP [dm6]	T	A	3.953e^-4	0.761	SYNONYMOUS_CODING Sema-1a
2R	16356392	2R_16356392_SNP [dm3] 2R_20468887_SNP [dm6]	T	A	3.953e^-4	0.761	SPLICE_SITE_REGION CG12484 INTRON CG12484
2L	7916466	2L_7916466_SNP [dm3] 2L_7916466_SNP [dm6]	C	T	3.955e^-4	0.761	INTRON Snoo
2L	1239739	2L_1239739_SNP [dm3] 2L_1239739_SNP [dm6]	G	T	3.956e^-4	0.761	UPSTREAM CG5397 INTERGENIC
2R	3178456	2R_3178456_SNP [dm3] 2R_7290951_SNP [dm6]	C	G	3.957e^-4	0.761	INTRON pwn	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	3619171	2R_3619171_SNP [dm3] 2R_7731666_SNP [dm6]	C	T	3.961e^-4	0.761	INTRON CG18812
2R	1414098	2R_1414098_SNP [dm3] 2R_5526593_SNP [dm6]	A	T	3.969e^-4	0.762	UPSTREAM CG30438 INTRON CG30438	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	9598485	2R_9598485_SNP [dm3] 2R_13710980_SNP [dm6]	G	C	3.983e^-4	0.764	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	461802	2L_461802_SNP [dm3] 2L_461802_SNP [dm6]	T	C	3.991e^-4	0.764	SYNONYMOUS_CODING CG4297	TF binding site mE1_TFBS_cad
2R	3471625	2R_3471625_DEL [dm3] 2R_7584120_DEL [dm6]	GGTGGATATACA...	G	3.992e^-4	0.764	INTRON blow
3L	11035221	3L_11035221_DEL [dm3] 3L_11042121_DEL [dm6]	AA	A	3.995e^-4	0.764	INTRON CG43693	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	13699157	2L_13699157_SNP [dm3] 2L_13699157_SNP [dm6]	G	A	4.002e^-4	0.764	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9557265	3R_9557265_SNP [dm3] 3R_13731543_SNP [dm6]	A	C	4.007e^-4	0.764	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5606691	2L_5606691_SNP [dm3] 2L_5606691_SNP [dm6]	G	A	4.012e^-4	0.764	INTRON CG14010
3R	25890815	3R_25890815_SNP [dm3] 3R_30065093_SNP [dm6]	C	T	4.015e^-4	0.764	INTRON sima
2L	15281412	2L_15281412_DEL [dm3] 2L_15281412_DEL [dm6]	TGAAGA	T	4.031e^-4	0.764	DOWNSTREAM CR45349 INTERGENIC
2R	11284508	2R_11284508_SNP [dm3] 2R_15397003_SNP [dm6]	C	T	4.032e^-4	0.764	INTERGENIC
3L	1179506	3L_1179506_INS [dm3] 3L_1179506_INS [dm6]	T	TCT	4.033e^-4	0.764	INTERGENIC
3R	4851134	3R_4851134_SNP [dm3] 3R_9025412_SNP [dm6]	C	G	4.034e^-4	0.764	INTRON neur	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2414331	2L_2414331_SNP [dm3] 2L_2414331_SNP [dm6]	A	G	4.043e^-4	0.764	INTRON CG18641
3R	4020470	3R_4020470_SNP [dm3] 3R_8194748_SNP [dm6]	C	G	4.044e^-4	0.764	INTERGENIC
3L	13166222	3L_13166222_SNP [dm3] 3L_13173122_SNP [dm6]	G	A	4.049e^-4	0.764	INTERGENIC
3R	17920168	3R_17920168_SNP [dm3] 3R_22094446_SNP [dm6]	G	C	4.058e^-4	0.764	INTRON CG5778
3R	23603534	3R_23603534_DEL [dm3] 3R_27777812_DEL [dm6]	GG	G	4.059e^-4	0.764	INTRON CG34353
2L	8310995	2L_8310995_SNP [dm3] 2L_8310995_SNP [dm6]	G	A	4.061e^-4	0.764	SYNONYMOUS_CODING CG7810 UPSTREAM CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	8787577	2L_8787577_SNP [dm3] 2L_8787577_SNP [dm6]	G	T	4.063e^-4	0.764	INTERGENIC
2R	3178804	2R_3178804_SNP [dm3] 2R_7291299_SNP [dm6]	A	G	4.076e^-4	0.764	INTRON pwn	TF binding site mE1_TFBS_cad
X	4246055	X_4246055_SNP [dm3] X_4352022_SNP [dm6]	A	G	4.076e^-4	0.764	INTRON norpA
2L	1361014	2L_1361014_SNP [dm3] 2L_1361014_SNP [dm6]	A	G	4.095e^-4	0.764	INTRON NLaz
2L	8787764	2L_8787764_SNP [dm3] 2L_8787764_SNP [dm6]	T	C	4.095e^-4	0.764	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.033e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	2.82e-07
In_2R_NS	0.05487
In_3R_K	0.04071

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	23.5992	1.1864e-06
In_3R_K	4.6536	0.0976

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1965 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	7748840	X_7748840_SNP [dm3] X_7854807_SNP [dm6]	T	A	7.476e^-7	0.847	UPSTREAM CG10920 INTERGENIC
3R	24902133	3R_24902133_SNP [dm3] 3R_29076411_SNP [dm6]	G	T	1.622e^-6	0.847	INTRON CG11873
2L	3884498	2L_3884498_SNP [dm3] 2L_3884498_SNP [dm6]	G	A	2.993e^-6	0.847	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_cad
3R	11695487	3R_11695487_SNP [dm3] 3R_15869765_SNP [dm6]	T	C	3.641e^-6	0.847	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15119664	2R_15119664_SNP [dm3] 2R_19232159_SNP [dm6]	A	C	3.969e^-6	0.847	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	9462833	2R_9462833_SNP [dm3] 2R_13575328_SNP [dm6]	A	T	4.539e^-6	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17582092	2R_17582092_SNP [dm3] 2R_21694587_SNP [dm6]	A	G	5.224e^-6	0.847	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3R	25674822	3R_25674822_SNP [dm3] 3R_29849100_SNP [dm6]	A	T	7.152e^-6	0.847	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
3L	3071049	3L_3071049_SNP [dm3] 3L_3071049_SNP [dm6]	T	A	7.576e^-6	0.847	UPSTREAM CG11486 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7748876	X_7748876_SNP [dm3] X_7854843_SNP [dm6]	C	A	8.491e^-6	0.847	UPSTREAM CG10920 INTERGENIC
2R	8127278	2R_8127278_MNP [dm3] 2R_12239773_MNP [dm6]	TTT	CAC	9.782e^-6	0.847	UPSTREAM CG13170 INTERGENIC
X	14026961	X_14026961_SNP [dm3] X_14132928_SNP [dm6]	G	A	1.008e^-5	0.847	INTERGENIC
3L	13973028	3L_13973028_SNP [dm3] 3L_13979928_SNP [dm6]	C	T	1.051e^-5	0.847	INTRON CG17364
2L	19962182	2L_19962182_SNP [dm3] 2L_19962182_SNP [dm6]	G	A	1.092e^-5	0.847	SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2516609	2L_2516609_SNP [dm3] 2L_2516609_SNP [dm6]	A	G	1.196e^-5	0.847	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	1026382	4_1026382_SNP [dm3] 4_1005756_SNP [dm6]	T	G	1.311e^-5	0.847	INTRON toy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2836822	2L_2836822_SNP [dm3] 2L_2836822_SNP [dm6]	G	T	1.316e^-5	0.847	INTRON CG3119
2R	14755046	2R_14755046_SNP [dm3] 2R_18867541_SNP [dm6]	A	G	1.317e^-5	0.847	DOWNSTREAM CG43109 INTRON DptB
3L	3599150	3L_3599150_SNP [dm3] 3L_3599150_SNP [dm6]	A	C	1.355e^-5	0.847	INTRON Eip63E
2L	14084064	2L_14084064_SNP [dm3] 2L_14084064_SNP [dm6]	G	A	1.364e^-5	0.847	INTRON nAChRalpha5
2R	13596327	2R_13596327_SNP [dm3] 2R_17708822_SNP [dm6]	T	A	1.464e^-5	0.847	UTR_5_PRIME CG6424 INTRON CG6424
2R	11144361	2R_11144361_SNP [dm3] 2R_15256856_SNP [dm6]	G	T	1.481e^-5	0.847	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5163084	2L_5163084_SNP [dm3] 2L_5163084_SNP [dm6]	G	A	1.492e^-5	0.847	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3599128	3L_3599128_SNP [dm3] 3L_3599128_SNP [dm6]	G	C	1.535e^-5	0.847	INTRON Eip63E
3L	10357704	3L_10357704_SNP [dm3] 3L_10364604_SNP [dm6]	T	C	1.549e^-5	0.847	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	12570650	2L_12570650_SNP [dm3] 2L_12570650_SNP [dm6]	C	A	1.582e^-5	0.847	DOWNSTREAM CR44598 & 1 other INTERGENIC
4	879680	4_879680_SNP [dm3] 4_859054_SNP [dm6]	T	C	1.599e^-5	0.847	INTRON CG11148	transposable element FlyBase
3L	21585737	3L_21585737_SNP [dm3] 3L_21592637_SNP [dm6]	A	G	1.624e^-5	0.847	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9463408	2R_9463408_SNP [dm3] 2R_13575903_SNP [dm6]	A	T	1.669e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2L	3401963	2L_3401963_SNP [dm3] 2L_3401963_SNP [dm6]	T	G	1.683e^-5	0.847	INTERGENIC
3R	6116239	3R_6116239_SNP [dm3] 3R_10290517_SNP [dm6]	A	C	1.809e^-5	0.847	UPSTREAM CG43143 INTRON CG43143
2R	16987070	2R_16987070_SNP [dm3] 2R_21099565_SNP [dm6]	T	C	1.819e^-5	0.847	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13388012	2R_13388012_SNP [dm3] 2R_17500507_SNP [dm6]	T	A	1.833e^-5	0.847	INTERGENIC	TF binding site mE1_TFBS_inv
X	22240772	X_22240772_SNP [dm3] X_22838936_SNP [dm6]	C	T	1.981e^-5	0.847	INTRON fog & 1 other
3L	3597912	3L_3597912_SNP [dm3] 3L_3597912_SNP [dm6]	C	T	1.984e^-5	0.847	INTRON Eip63E	TF binding site mE1_TFBS_cad
X	21905024	X_21905024_DEL [dm3] X_22503188_DEL [dm6]	CAAA	T	2.046e^-5	0.847	INTRON l_1_G0196
3R	24237882	3R_24237882_SNP [dm3] 3R_28412160_SNP [dm6]	C	T	2.149e^-5	0.847	INTERGENIC
X	21905021	X_21905021_SNP [dm3] X_22503185_SNP [dm6]	T	G	2.311e^-5	0.847	INTRON l_1_G0196
3L	9645115	3L_9645115_SNP [dm3] 3L_9652015_SNP [dm6]	G	A	2.312e^-5	0.847	INTRON fry & 1 other
3L	2686810	3L_2686810_SNP [dm3] 3L_2686810_SNP [dm6]	T	C	2.335e^-5	0.847	INTRON Fife
X	22240773	X_22240773_SNP [dm3] X_22838937_SNP [dm6]	T	A	2.376e^-5	0.847	INTRON fog & 1 other
3R	24324493	3R_24324493_SNP [dm3] 3R_28498771_SNP [dm6]	G	A	2.442e^-5	0.847	INTRON Dhc98D
3R	24237872	3R_24237872_SNP [dm3] 3R_28412150_SNP [dm6]	C	A	2.536e^-5	0.847	INTERGENIC
3L	8667196	3L_8667196_SNP [dm3] 3L_8674096_SNP [dm6]	A	T	2.564e^-5	0.847	INTERGENIC	regulatory region REDfly_CRMs
3L	12518125	3L_12518125_SNP [dm3] 3L_12525025_SNP [dm6]	A	G	2.564e^-5	0.847	SYNONYMOUS_CODING ver DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16161654	X_16161654_SNP [dm3] X_16267621_SNP [dm6]	G	A	2.659e^-5	0.847	SYNONYMOUS_CODING kat80
2R	13596329	2R_13596329_SNP [dm3] 2R_17708824_SNP [dm6]	C	T	2.676e^-5	0.847	UTR_5_PRIME CG6424 INTRON CG6424
3R	8069590	3R_8069590_SNP [dm3] 3R_12243868_SNP [dm6]	G	A	2.747e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	12992913	2R_12992913_SNP [dm3] 2R_17105408_SNP [dm6]	G	T	2.839e^-5	0.847	INTRON CG30456
2R	9463447	2R_9463447_SNP [dm3] 2R_13575942_SNP [dm6]	G	T	2.879e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	7807839	X_7807839_DEL [dm3] X_7913806_DEL [dm6]	TA	T	2.950e^-5	0.847	SPLICE_SITE_REGION snz INTRON snz
X	17084119	X_17084119_SNP [dm3] X_17190086_SNP [dm6]	T	C	2.981e^-5	0.847	SYNONYMOUS_CODING baz	TF binding site mE1_TFBS_chinmo
X	21226306	X_21226306_SNP [dm3] X_21355279_SNP [dm6]	A	G	2.982e^-5	0.847	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20501638	2R_20501638_DEL [dm3] 2R_24614115_DEL [dm6]	TATGGAC	G	3.004e^-5	0.847	DOWNSTREAM CG3608 INTRON CG4741
2R	14755006	2R_14755006_SNP [dm3] 2R_18867501_SNP [dm6]	C	T	3.066e^-5	0.847	NON_SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2R	16038418	2R_16038418_SNP [dm3] 2R_20150913_SNP [dm6]	G	T	3.196e^-5	0.847	EXON CR45229
3L	3437390	3L_3437390_SNP [dm3] 3L_3437390_SNP [dm6]	A	G	3.271e^-5	0.847	INTRON eIF5B
X	12923269	X_12923269_SNP [dm3] X_13029236_SNP [dm6]	C	T	3.284e^-5	0.847	INTRON rad
X	14390360	X_14390360_SNP [dm3] X_14496327_SNP [dm6]	A	G	3.331e^-5	0.847	SYNONYMOUS_CODING CG12540
2L	736277	2L_736277_SNP [dm3] 2L_736277_SNP [dm6]	A	G	3.379e^-5	0.847	DOWNSTREAM Eaat2 INTERGENIC
4	652615	4_652615_SNP [dm3] 4_631989_SNP [dm6]	G	A	3.382e^-5	0.847	INTRON CG1732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2686823	3L_2686823_SNP [dm3] 3L_2686823_SNP [dm6]	C	A	3.388e^-5	0.847	INTRON Fife
X	19759785	X_19759785_SNP [dm3] X_19865752_SNP [dm6]	A	T	3.416e^-5	0.847	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
3R	4193131	3R_4193131_SNP [dm3] 3R_8367409_SNP [dm6]	C	A	3.724e^-5	0.847	UTR_3_PRIME CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
3L	2850234	3L_2850234_SNP [dm3] 3L_2850234_SNP [dm6]	T	A	3.748e^-5	0.847	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13973043	3L_13973043_SNP [dm3] 3L_13979943_SNP [dm6]	C	A	3.764e^-5	0.847	INTRON CG17364
2L	12384164	2L_12384164_INS [dm3] 2L_12384164_INS [dm6]	T	TACACT	3.946e^-5	0.847	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13973074	3L_13973074_SNP [dm3] 3L_13979974_SNP [dm6]	A	T	3.959e^-5	0.847	INTRON CG17364
3L	9104047	3L_9104047_INS [dm3] 3L_9110947_INS [dm6]	G	GTGGCAGTG	4.058e^-5	0.847	INTRON bol
X	14802248	X_14802248_SNP [dm3] X_14908215_SNP [dm6]	C	T	4.144e^-5	0.847	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
3L	16328563	3L_16328563_SNP [dm3] 3L_16335463_SNP [dm6]	A	T	4.212e^-5	0.847	INTERGENIC
X	21904999	X_21904999_MNP [dm3] X_22503163_MNP [dm6]	CGA	TTG	4.218e^-5	0.847	INTRON l_1_G0196
3L	6282767	3L_6282767_SNP [dm3] 3L_6289667_SNP [dm6]	G	A	4.229e^-5	0.847	INTERGENIC
X	13252771	X_13252771_SNP [dm3] X_13358738_SNP [dm6]	C	T	4.258e^-5	0.847	UPSTREAM Syt12 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	915288	2L_915288_SNP [dm3] 2L_915288_SNP [dm6]	C	A	4.275e^-5	0.847	INTRON GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9463229	2R_9463229_SNP [dm3] 2R_13575724_SNP [dm6]	A	G	4.280e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	21905018	X_21905018_SNP [dm3] X_22503182_SNP [dm6]	G	A	4.310e^-5	0.847	INTRON l_1_G0196
X	16748487	X_16748487_SNP [dm3] X_16854454_SNP [dm6]	A	T	4.318e^-5	0.847	INTRON CG13003
3R	19534637	3R_19534637_SNP [dm3] 3R_23708915_SNP [dm6]	T	C	4.336e^-5	0.847	DOWNSTREAM CG31414 INTERGENIC
2L	18442382	2L_18442382_SNP [dm3] 2L_18442382_SNP [dm6]	G	T	4.389e^-5	0.847	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	16987077	2R_16987077_SNP [dm3] 2R_21099572_SNP [dm6]	G	A	4.434e^-5	0.847	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21017532	3R_21017532_SNP [dm3] 3R_25191810_SNP [dm6]	C	A	4.448e^-5	0.847	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11433455	2L_11433455_INS [dm3] 2L_11433455_INS [dm6]	T	TATCTTGTAAT...	4.483e^-5	0.847	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12570631	2L_12570631_SNP [dm3] 2L_12570631_SNP [dm6]	A	G	4.541e^-5	0.847	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	7278803	3R_7278803_SNP [dm3] 3R_11453081_SNP [dm6]	C	A	4.543e^-5	0.847	NON_SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
4	909588	4_909588_SNP [dm3] 4_888962_SNP [dm6]	C	G	4.549e^-5	0.847	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
2R	9460400	2R_9460400_SNP [dm3] 2R_13572895_SNP [dm6]	G	T	4.561e^-5	0.847	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3R	7875791	3R_7875791_DEL [dm3] 3R_12050069_DEL [dm6]	TT	T	4.619e^-5	0.847	UPSTREAM CG14739 INTERGENIC
3L	21585680	3L_21585680_SNP [dm3] 3L_21592580_SNP [dm6]	C	T	4.640e^-5	0.847	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4121731	3L_4121731_SNP [dm3] 3L_4121731_SNP [dm6]	G	A	4.720e^-5	0.847	INTRON Chd64
X	14390430	X_14390430_SNP [dm3] X_14496397_SNP [dm6]	A	T	4.734e^-5	0.847	INTRON CG12540
3L	16745823	3L_16745823_DEL [dm3] 3L_16752723_DEL [dm6]	GCTGCCCTCCTTCG...	G	4.761e^-5	0.847	INTERGENIC
2R	9463203	2R_9463203_SNP [dm3] 2R_13575698_SNP [dm6]	A	C	4.761e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	13164340	3L_13164340_DEL [dm3] 3L_13171240_DEL [dm6]	CTTTGA	G	4.813e^-5	0.847	INTERGENIC
X	3754871	X_3754871_SNP [dm3] X_3860838_SNP [dm6]	A	C	4.824e^-5	0.847	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10021914	2R_10021914_INS [dm3] 2R_14134409_INS [dm6]	TC	AAGT	4.891e^-5	0.847	INTRON Prosap
3L	448287	3L_448287_SNP [dm3] 3L_448287_SNP [dm6]	A	G	5.014e^-5	0.847	UPSTREAM klar INTRON klar	TF binding site mE1_TFBS_cad
3L	9342168	3L_9342168_SNP [dm3] 3L_9349068_SNP [dm6]	C	A	5.123e^-5	0.847	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
3L	9645116	3L_9645116_INS [dm3] 3L_9652016_INS [dm6]	T	TAT	5.174e^-5	0.847	INTRON fry & 1 other
X	18994634	X_18994634_SNP [dm3] X_19100601_SNP [dm6]	C	T	5.202e^-5	0.847	INTERGENIC
2R	9463241	2R_9463241_SNP [dm3] 2R_13575736_SNP [dm6]	A	T	5.222e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3R	21155915	3R_21155915_SNP [dm3] 3R_25330193_SNP [dm6]	T	C	5.225e^-5	0.847	SPLICE_SITE_REGION CHKov2 UPSTREAM CHKov1 INTRON CHKov2	TF binding site mE1_TFBS_Trl
2R	9462866	2R_9462866_SNP [dm3] 2R_13575361_SNP [dm6]	C	T	5.241e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8007065	X_8007065_SNP [dm3] X_8113032_SNP [dm6]	C	T	5.247e^-5	0.847	INTRON Gclc
2R	10021894	2R_10021894_SNP [dm3] 2R_14134389_SNP [dm6]	A	C	5.409e^-5	0.847	INTRON Prosap
2R	9097965	2R_9097965_SNP [dm3] 2R_13210460_SNP [dm6]	C	T	5.458e^-5	0.847	SPLICE_SITE_REGION CG34235 & 2 others SYNONYMOUS_CODING CG34312 UTR_3_PRIME FLASH & 2 others DOWNSTREAM FLASH
X	18487464	X_18487464_SNP [dm3] X_18593431_SNP [dm6]	G	C	5.499e^-5	0.847	INTERGENIC
X	1029310	X_1029310_DEL [dm3] X_1135277_DEL [dm6]	GC	G	5.506e^-5	0.847	UPSTREAM CG3655 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9463261	2R_9463261_SNP [dm3] 2R_13575756_SNP [dm6]	A	C	5.580e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	5642397	3L_5642397_SNP [dm3] 3L_5649297_SNP [dm6]	T	A	5.585e^-5	0.847	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
2L	19617335	2L_19617335_SNP [dm3] 2L_19617335_SNP [dm6]	C	T	5.595e^-5	0.847	INTRON Lar
2R	9463262	2R_9463262_SNP [dm3] 2R_13575757_SNP [dm6]	T	A	5.699e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	12035410	3L_12035410_SNP [dm3] 3L_12042310_SNP [dm6]	C	G	5.713e^-5	0.847	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2R	15754480	2R_15754480_SNP [dm3] 2R_19866975_SNP [dm6]	A	C	5.717e^-5	0.847	INTRON Obp56i
X	17452243	X_17452243_SNP [dm3] X_17558210_SNP [dm6]	T	C	5.745e^-5	0.847	INTRON CG43658
2R	6680857	2R_6680857_SNP [dm3] 2R_10793352_SNP [dm6]	G	T	5.770e^-5	0.847	DOWNSTREAM mthl13 INTRON CG33144
2R	4161579	2R_4161579_SNP [dm3] 2R_8274074_SNP [dm6]	A	G	5.776e^-5	0.847	INTERGENIC
2L	9071279	2L_9071279_SNP [dm3] 2L_9071279_SNP [dm6]	G	A	5.841e^-5	0.847	UPSTREAM CG31708 EXON CR44483
3L	1364996	3L_1364996_DEL [dm3] 3L_1364996_DEL [dm6]	TCTTATTATATGGAAT...	T	5.868e^-5	0.847	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15537025	X_15537025_SNP [dm3] X_15642992_SNP [dm6]	G	T	5.903e^-5	0.847	UPSTREAM CR44893 INTERGENIC
X	8007069	X_8007069_DEL [dm3] X_8113036_DEL [dm6]	TT	C	5.949e^-5	0.847	INTRON Gclc
X	17452155	X_17452155_SNP [dm3] X_17558122_SNP [dm6]	A	G	5.955e^-5	0.847	INTRON CG43658
2L	19399242	2L_19399242_SNP [dm3] 2L_19399242_SNP [dm6]	A	G	6.215e^-5	0.847	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9463265	2R_9463265_SNP [dm3] 2R_13575760_SNP [dm6]	A	C	6.344e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	21905003	X_21905003_DEL [dm3] X_22503167_DEL [dm6]	AGCCAA	C	6.425e^-5	0.847	INTRON l_1_G0196
X	5905305	X_5905305_SNP [dm3] X_6011272_SNP [dm6]	G	A	6.458e^-5	0.847	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20560716	2L_20560716_SNP [dm3] 2L_20560716_SNP [dm6]	A	G	6.469e^-5	0.847	INTERGENIC
X	7164200	X_7164200_SNP [dm3] X_7270167_SNP [dm6]	A	G	6.482e^-5	0.847	INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19759964	X_19759964_DEL [dm3] X_19865931_DEL [dm6]	TACTTATTTACTTA...	T	6.516e^-5	0.847	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15289500	X_15289500_SNP [dm3] X_15395467_SNP [dm6]	A	G	6.842e^-5	0.847	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12411766	2L_12411766_SNP [dm3] 2L_12411766_SNP [dm6]	T	C	6.861e^-5	0.847	INTRON vir-1
2L	19962185	2L_19962185_SNP [dm3] 2L_19962185_SNP [dm6]	C	A	6.864e^-5	0.847	SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10356375	3L_10356375_SNP [dm3] 3L_10363275_SNP [dm6]	C	T	6.878e^-5	0.847	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	21905012	X_21905012_SNP [dm3] X_22503176_SNP [dm6]	T	G	6.891e^-5	0.847	INTRON l_1_G0196
2L	18421652	2L_18421652_SNP [dm3] 2L_18421652_SNP [dm6]	T	A	6.902e^-5	0.847	INTERGENIC
2R	7563019	2R_7563019_DEL [dm3] 2R_11675514_DEL [dm6]	TCAACTTCT	C	6.921e^-5	0.847	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6680856	2R_6680856_SNP [dm3] 2R_10793351_SNP [dm6]	G	C	6.968e^-5	0.847	DOWNSTREAM mthl13 INTRON CG33144
2L	4671264	2L_4671264_SNP [dm3] 2L_4671264_SNP [dm6]	A	C	6.976e^-5	0.847	INTERGENIC
2R	9463264	2R_9463264_SNP [dm3] 2R_13575759_SNP [dm6]	T	A	7.004e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	15289473	X_15289473_SNP [dm3] X_15395440_SNP [dm6]	A	T	7.020e^-5	0.847	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17181237	X_17181237_SNP [dm3] X_17287204_SNP [dm6]	A	G	7.058e^-5	0.847	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA
3L	2807138	3L_2807138_SNP [dm3] 3L_2807138_SNP [dm6]	T	C	7.100e^-5	0.847	INTRON CG43444
2R	15754408	2R_15754408_SNP [dm3] 2R_19866903_SNP [dm6]	A	G	7.167e^-5	0.847	INTRON Obp56i
2R	17102454	2R_17102454_SNP [dm3] 2R_21214949_SNP [dm6]	G	A	7.219e^-5	0.847	UTR_5_PRIME CG4302 DOWNSTREAM CG15661
2L	18549095	2L_18549095_SNP [dm3] 2L_18549095_SNP [dm6]	A	G	7.302e^-5	0.847	INTRON Pde11
2R	12130062	2R_12130062_SNP [dm3] 2R_16242557_SNP [dm6]	C	A	7.313e^-5	0.847	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3R	9557265	3R_9557265_SNP [dm3] 3R_13731543_SNP [dm6]	A	C	7.332e^-5	0.847	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12384153	2L_12384153_DEL [dm3] 2L_12384153_DEL [dm6]	AGTTA	A	7.421e^-5	0.847	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14715672	2R_14715672_SNP [dm3] 2R_18828167_SNP [dm6]	G	A	7.436e^-5	0.847	INTRON CG15097
3R	22984427	3R_22984427_SNP [dm3] 3R_27158705_SNP [dm6]	T	C	7.486e^-5	0.847	SYNONYMOUS_CODING grass
2R	17335630	2R_17335630_SNP [dm3] 2R_21448125_SNP [dm6]	A	C	7.509e^-5	0.847	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12384190	2L_12384190_SNP [dm3] 2L_12384190_SNP [dm6]	T	A	7.627e^-5	0.847	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16986573	2R_16986573_SNP [dm3] 2R_21099068_SNP [dm6]	G	A	7.722e^-5	0.847	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3L	10360298	3L_10360298_SNP [dm3] 3L_10367198_SNP [dm6]	G	T	7.794e^-5	0.847	EXON CR44327
2L	19446506	2L_19446506_SNP [dm3] 2L_19446506_SNP [dm6]	G	A	7.836e^-5	0.847	NON_SYNONYMOUS_CODING RanGAP DOWNSTREAM Top2	TF binding site mE1_TFBS_sens
2L	12384145	2L_12384145_SNP [dm3] 2L_12384145_SNP [dm6]	G	T	7.850e^-5	0.847	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8667136	3L_8667136_SNP [dm3] 3L_8674036_SNP [dm6]	T	C	7.891e^-5	0.847	INTERGENIC	regulatory region REDfly_CRMs
3R	25680799	3R_25680799_SNP [dm3] 3R_29855077_SNP [dm6]	A	G	7.913e^-5	0.847	DOWNSTREAM dgt1 & 1 other INTRON dgt1	TF binding site mE1_TFBS_cad
3L	3138481	3L_3138481_SNP [dm3] 3L_3138481_SNP [dm6]	G	C	7.933e^-5	0.847	INTRON CG11537
X	15289517	X_15289517_SNP [dm3] X_15395484_SNP [dm6]	G	T	7.948e^-5	0.847	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9463245	2R_9463245_SNP [dm3] 2R_13575740_SNP [dm6]	T	A	8.011e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	3675282	3L_3675282_SNP [dm3] 3L_3675282_SNP [dm6]	G	A	8.064e^-5	0.847	INTERGENIC
2L	4671261	2L_4671261_SNP [dm3] 2L_4671261_SNP [dm6]	T	C	8.203e^-5	0.847	INTERGENIC
2R	8616765	2R_8616765_SNP [dm3] 2R_12729260_SNP [dm6]	C	G	8.207e^-5	0.847	INTRON CG42663
2L	16840949	2L_16840949_SNP [dm3] 2L_16840949_SNP [dm6]	G	A	8.273e^-5	0.847	INTRON SclA & 1 other
X	3319796	X_3319796_SNP [dm3] X_3425763_SNP [dm6]	T	C	8.273e^-5	0.847	INTRON CR44999 & 1 other
3L	5709547	3L_5709547_SNP [dm3] 3L_5716447_SNP [dm6]	T	G	8.280e^-5	0.847	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	11655664	3L_11655664_SNP [dm3] 3L_11662564_SNP [dm6]	T	G	8.287e^-5	0.847	INTRON CG32085
3R	24123756	3R_24123756_SNP [dm3] 3R_28298034_SNP [dm6]	G	A	8.300e^-5	0.847	INTERGENIC
2L	19641863	2L_19641863_INS [dm3] 2L_19641863_INS [dm6]	T	TTC	8.342e^-5	0.847	DOWNSTREAM CR44979 INTRON Lar
3R	15634957	3R_15634957_SNP [dm3] 3R_19809235_SNP [dm6]	T	C	8.368e^-5	0.847	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22970367	3L_22970367_SNP [dm3] 3L_22977267_SNP [dm6]	G	A	8.385e^-5	0.847	INTERGENIC	transposable element FlyBase
2R	13707741	2R_13707741_SNP [dm3] 2R_17820236_SNP [dm6]	A	T	8.393e^-5	0.847	INTRON grh	transposable element FlyBase
3L	16774317	3L_16774317_INS [dm3] 3L_16781217_INS [dm6]	T	TAATT	8.465e^-5	0.847	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
3R	6115508	3R_6115508_SNP [dm3] 3R_10289786_SNP [dm6]	T	A	8.510e^-5	0.847	UPSTREAM CG43143 INTRON CG43143
2L	17550875	2L_17550875_SNP [dm3] 2L_17550875_SNP [dm6]	A	G	8.581e^-5	0.847	INTERGENIC
2L	4670685	2L_4670685_SNP [dm3] 2L_4670685_SNP [dm6]	A	G	8.621e^-5	0.847	INTERGENIC
3R	25316349	3R_25316349_SNP [dm3] 3R_29490627_SNP [dm6]	T	C	8.643e^-5	0.847	UTR_3_PRIME CG2006 & 1 other DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3595417	3L_3595417_SNP [dm3] 3L_3595417_SNP [dm6]	T	C	8.793e^-5	0.847	INTRON Eip63E
2R	15286009	2R_15286009_SNP [dm3] 2R_19398504_SNP [dm6]	G	A	8.818e^-5	0.847	UTR_3_PRIME hts DOWNSTREAM hts
2R	16986078	2R_16986078_SNP [dm3] 2R_21098573_SNP [dm6]	C	G	8.842e^-5	0.847	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	2390123	X_2390123_SNP [dm3] X_2496090_SNP [dm6]	A	G	8.887e^-5	0.847	INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	18701566	2R_18701566_SNP [dm3] 2R_22814061_SNP [dm6]	C	T	8.905e^-5	0.847	INTRON stl	TF binding site mE1_TFBS_chinmo
2R	9463304	2R_9463304_SNP [dm3] 2R_13575799_SNP [dm6]	C	T	9.062e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	12035409	3L_12035409_SNP [dm3] 3L_12042309_SNP [dm6]	C	A	9.112e^-5	0.847	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2L	4671212	2L_4671212_SNP [dm3] 2L_4671212_SNP [dm6]	A	T	9.124e^-5	0.847	INTERGENIC
2L	4974723	2L_4974723_SNP [dm3] 2L_4974723_SNP [dm6]	C	T	9.129e^-5	0.847	SYNONYMOUS_CODING mRpL28 UPSTREAM l_2_05714 DOWNSTREAM Gmd	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26328054	3R_26328054_SNP [dm3] 3R_30502332_SNP [dm6]	T	A	9.150e^-5	0.847	INTRON CG31371
3R	11541735	3R_11541735_SNP [dm3] 3R_15716013_SNP [dm6]	A	G	9.176e^-5	0.847	SYNONYMOUS_CODING CG31294
X	20331755	X_20331755_SNP [dm3] X_20460728_SNP [dm6]	A	C	9.181e^-5	0.847	INTRON CG32506	transposable element FlyBase
3L	17697727	3L_17697727_SNP [dm3] 3L_17704627_SNP [dm6]	C	A	9.214e^-5	0.847	INTRON Ccn
2R	13387935	2R_13387935_SNP [dm3] 2R_17500430_SNP [dm6]	C	T	9.225e^-5	0.847	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10275199	3L_10275199_SNP [dm3] 3L_10282099_SNP [dm6]	G	T	9.228e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9097960	2R_9097960_SNP [dm3] 2R_13210455_SNP [dm6]	A	C	9.257e^-5	0.847	SPLICE_SITE_REGION CG30058 & 2 others UTR_3_PRIME FLASH DOWNSTREAM FLASH INTRON CG30058 & 2 others
3L	22970386	3L_22970386_SNP [dm3] 3L_22977286_SNP [dm6]	C	T	9.328e^-5	0.847	INTERGENIC	transposable element FlyBase
3L	5985263	3L_5985263_SNP [dm3] 3L_5992163_SNP [dm6]	A	G	9.369e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8010927	2L_8010927_DEL [dm3] 2L_8010927_DEL [dm6]	AA	A	9.409e^-5	0.847	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	9227549	2L_9227549_SNP [dm3] 2L_9227549_SNP [dm6]	A	G	9.417e^-5	0.847	INTRON tai
3L	12035406	3L_12035406_SNP [dm3] 3L_12042306_SNP [dm6]	T	C	9.451e^-5	0.847	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2R	9595658	2R_9595658_SNP [dm3] 2R_13708153_SNP [dm6]	C	A	9.495e^-5	0.847	INTRON fas
2R	6680381	2R_6680381_SNP [dm3] 2R_10792876_SNP [dm6]	T	C	9.510e^-5	0.847	INTRON CG33144 & 1 other
2R	20194419	2R_20194419_SNP [dm3] 2R_24306896_SNP [dm6]	T	C	9.545e^-5	0.847	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	6116208	3R_6116208_SNP [dm3] 3R_10290486_SNP [dm6]	A	C	9.619e^-5	0.847	UPSTREAM CG43143 INTRON CG43143
2L	4670702	2L_4670702_SNP [dm3] 2L_4670702_SNP [dm6]	A	G	9.645e^-5	0.847	INTERGENIC
3R	21985118	3R_21985118_SNP [dm3] 3R_26159396_SNP [dm6]	A	G	9.677e^-5	0.847	INTERGENIC
2L	14686806	2L_14686806_SNP [dm3] 2L_14686806_SNP [dm6]	T	C	9.735e^-5	0.847	INTRON osp
2L	7394993	2L_7394993_SNP [dm3] 2L_7394993_SNP [dm6]	A	G	9.739e^-5	0.847	INTRON CG5160
3L	13973131	3L_13973131_SNP [dm3] 3L_13980031_SNP [dm6]	T	A	9.740e^-5	0.847	INTRON CG17364
X	11053334	X_11053334_SNP [dm3] X_11159301_SNP [dm6]	G	A	9.769e^-5	0.847	INTRON Dlic & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25074735	3R_25074735_SNP [dm3] 3R_29249013_SNP [dm6]	C	A	9.779e^-5	0.847	UPSTREAM SP1029 INTRON SP1029
X	1029018	X_1029018_SNP [dm3] X_1134985_SNP [dm6]	T	C	9.834e^-5	0.847	UPSTREAM CG3655 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17702717	3L_17702717_SNP [dm3] 3L_17709617_SNP [dm6]	G	T	9.954e^-5	0.847	INTRON Ccn
2L	5183891	2L_5183891_SNP [dm3] 2L_5183891_SNP [dm6]	G	A	9.996e^-5	0.847	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25303370	3R_25303370_SNP [dm3] 3R_29477648_SNP [dm6]	G	C	1.000e^-4	0.847	INTRON Ptp99A
3L	4731841	3L_4731841_SNP [dm3] 3L_4731841_SNP [dm6]	T	G	1.001e^-4	0.847	INTRON RhoGEF64C
2L	10091510	2L_10091510_SNP [dm3] 2L_10091510_SNP [dm6]	G	A	1.008e^-4	0.847	UTR_3_PRIME CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo
2R	9463403	2R_9463403_DEL [dm3] 2R_13575898_DEL [dm6]	CCAG	C	1.025e^-4	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2R	9463409	2R_9463409_DEL [dm3] 2R_13575904_DEL [dm6]	TCA	T	1.025e^-4	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	5985290	3L_5985290_SNP [dm3] 3L_5992190_SNP [dm6]	G	A	1.025e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21033767	2L_21033767_SNP [dm3] 2L_21033767_SNP [dm6]	G	C	1.026e^-4	0.847	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14083914	2L_14083914_SNP [dm3] 2L_14083914_SNP [dm6]	A	T	1.029e^-4	0.847	INTRON nAChRalpha5
2R	9463298	2R_9463298_SNP [dm3] 2R_13575793_SNP [dm6]	C	T	1.029e^-4	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	10735517	3L_10735517_SNP [dm3] 3L_10742417_SNP [dm6]	A	T	1.032e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4330129	2L_4330129_SNP [dm3] 2L_4330129_SNP [dm6]	G	A	1.035e^-4	0.847	INTRON CG16857
2R	12130077	2R_12130077_SNP [dm3] 2R_16242572_SNP [dm6]	A	T	1.040e^-4	0.847	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2R	12130078	2R_12130078_SNP [dm3] 2R_16242573_SNP [dm6]	A	G	1.040e^-4	0.847	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2L	4670320	2L_4670320_SNP [dm3] 2L_4670320_SNP [dm6]	C	T	1.044e^-4	0.847	INTERGENIC
X	21905013	X_21905013_SNP [dm3] X_22503177_SNP [dm6]	G	T	1.049e^-4	0.847	INTRON l_1_G0196
3L	11655629	3L_11655629_SNP [dm3] 3L_11662529_SNP [dm6]	A	G	1.050e^-4	0.847	INTRON CG32085
2R	10476058	2R_10476058_SNP [dm3] 2R_14588553_SNP [dm6]	C	G	1.053e^-4	0.847	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15196531	3L_15196531_INS [dm3] 3L_15203431_INS [dm6]	T	TA	1.054e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3R	10651991	3R_10651991_SNP [dm3] 3R_14826269_SNP [dm6]	C	A	1.054e^-4	0.847	SYNONYMOUS_CODING btsz
3R	14679561	3R_14679561_SNP [dm3] 3R_18853839_SNP [dm6]	T	A	1.057e^-4	0.847	INTERGENIC
2R	9463164	2R_9463164_SNP [dm3] 2R_13575659_SNP [dm6]	C	A	1.065e^-4	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	21905010	X_21905010_SNP [dm3] X_22503174_SNP [dm6]	A	T	1.075e^-4	0.847	INTRON l_1_G0196
2L	17551088	2L_17551088_SNP [dm3] 2L_17551088_SNP [dm6]	C	T	1.093e^-4	0.847	INTERGENIC
2L	13893668	2L_13893668_SNP [dm3] 2L_13893668_SNP [dm6]	T	G	1.094e^-4	0.847	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	7419910	2R_7419910_SNP [dm3] 2R_11532405_SNP [dm6]	T	C	1.095e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7335660	2L_7335660_SNP [dm3] 2L_7335660_SNP [dm6]	G	A	1.098e^-4	0.847	INTRON Wnt6
2R	17010248	2R_17010248_SNP [dm3] 2R_21122743_SNP [dm6]	A	G	1.100e^-4	0.847	DOWNSTREAM CG4050 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12088459	2R_12088459_SNP [dm3] 2R_16200954_SNP [dm6]	C	T	1.102e^-4	0.847	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2L	4671269	2L_4671269_SNP [dm3] 2L_4671269_SNP [dm6]	C	A	1.102e^-4	0.847	INTERGENIC
2L	4671272	2L_4671272_SNP [dm3] 2L_4671272_SNP [dm6]	C	G	1.102e^-4	0.847	INTERGENIC
2L	1090924	2L_1090924_SNP [dm3] 2L_1090924_SNP [dm6]	C	A	1.102e^-4	0.847	INTRON CG4629
2R	15119637	2R_15119637_SNP [dm3] 2R_19232132_SNP [dm6]	T	A	1.106e^-4	0.847	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	2516635	2L_2516635_SNP [dm3] 2L_2516635_SNP [dm6]	T	A	1.119e^-4	0.852	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5254057	X_5254057_SNP [dm3] X_5360024_SNP [dm6]	C	A	1.123e^-4	0.852	INTRON SK
2L	4671265	2L_4671265_SNP [dm3] 2L_4671265_SNP [dm6]	A	T	1.130e^-4	0.855	INTERGENIC
2L	14801418	2L_14801418_SNP [dm3] 2L_14801418_SNP [dm6]	C	A	1.157e^-4	0.864	UPSTREAM CG33308 INTERGENIC
2R	19824076	2R_19824076_SNP [dm3] 2R_23936553_SNP [dm6]	G	C	1.159e^-4	0.864	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
3L	3071378	3L_3071378_SNP [dm3] 3L_3071378_SNP [dm6]	G	C	1.164e^-4	0.864	UPSTREAM CG32486 INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17722602	3L_17722602_SNP [dm3] 3L_17729502_SNP [dm6]	T	A	1.171e^-4	0.864	UPSTREAM CG6052 INTRON Ccn
3L	6530078	3L_6530078_SNP [dm3] 3L_6536978_SNP [dm6]	A	T	1.175e^-4	0.864	INTRON sfl
3L	17744984	3L_17744984_SNP [dm3] 3L_17751884_SNP [dm6]	A	G	1.175e^-4	0.864	UTR_3_PRIME Adgf-A
2L	13331821	2L_13331821_SNP [dm3] 2L_13331821_SNP [dm6]	C	A	1.187e^-4	0.864	UPSTREAM CG43778 INTERGENIC
3L	12508542	3L_12508542_SNP [dm3] 3L_12515442_SNP [dm6]	G	A	1.191e^-4	0.864	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	20370148	3L_20370148_SNP [dm3] 3L_20377048_SNP [dm6]	G	A	1.200e^-4	0.864	UPSTREAM RhoBTB INTRON RhoBTB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	17105024	2R_17105024_SNP [dm3] 2R_21217519_SNP [dm6]	T	G	1.207e^-4	0.864	DOWNSTREAM ASPP INTRON CG15661
2R	19824066	2R_19824066_SNP [dm3] 2R_23936543_SNP [dm6]	C	G	1.207e^-4	0.864	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
3L	11655661	3L_11655661_SNP [dm3] 3L_11662561_SNP [dm6]	G	A	1.209e^-4	0.864	INTRON CG32085
4	871661	4_871661_SNP [dm3] 4_851035_SNP [dm6]	G	A	1.211e^-4	0.864	UPSTREAM CR45123 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6530006	3L_6530006_SNP [dm3] 3L_6536906_SNP [dm6]	G	T	1.214e^-4	0.864	INTRON sfl
3L	4300925	3L_4300925_SNP [dm3] 3L_4300925_SNP [dm6]	T	C	1.214e^-4	0.864	INTRON dyl
3R	25471603	3R_25471603_SNP [dm3] 3R_29645881_SNP [dm6]	C	A	1.219e^-4	0.864	INTRON Dop1R2
3L	20370149	3L_20370149_SNP [dm3] 3L_20377049_SNP [dm6]	T	A	1.221e^-4	0.864	UPSTREAM RhoBTB INTRON RhoBTB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	2796786	2R_2796786_SNP [dm3] 2R_6909281_SNP [dm6]	C	G	1.240e^-4	0.87	INTRON CG30158
X	13846144	X_13846144_SNP [dm3] X_13952111_SNP [dm6]	G	T	1.248e^-4	0.87	INTRON mamo
2L	14166721	2L_14166721_SNP [dm3] 2L_14166721_SNP [dm6]	A	G	1.248e^-4	0.87	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_chinmo
2L	1254283	2L_1254283_SNP [dm3] 2L_1254283_SNP [dm6]	T	G	1.251e^-4	0.87	INTERGENIC
X	17452268	X_17452268_SNP [dm3] X_17558235_SNP [dm6]	C	A	1.265e^-4	0.87	INTRON CG43658
2L	12384183	2L_12384183_SNP [dm3] 2L_12384183_SNP [dm6]	G	T	1.268e^-4	0.87	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16094714	X_16094714_SNP [dm3] X_16200681_SNP [dm6]	G	A	1.269e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13893683	2L_13893683_SNP [dm3] 2L_13893683_SNP [dm6]	A	G	1.272e^-4	0.87	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	26327986	3R_26327986_SNP [dm3] 3R_30502264_SNP [dm6]	G	A	1.273e^-4	0.87	SPLICE_SITE_REGION CG31371 INTRON CG31371
2L	17551062	2L_17551062_DEL [dm3] 2L_17551062_DEL [dm6]	TTTCTGAT	T	1.275e^-4	0.87	INTERGENIC
2R	6076531	2R_6076531_SNP [dm3] 2R_10189026_SNP [dm6]	A	G	1.283e^-4	0.87	INTRON KCNQ
3L	12472751	3L_12472751_SNP [dm3] 3L_12479651_SNP [dm6]	A	C	1.285e^-4	0.87	INTRON CG10663
2R	4161576	2R_4161576_SNP [dm3] 2R_8274071_SNP [dm6]	A	G	1.291e^-4	0.87	INTERGENIC
3L	13898841	3L_13898841_SNP [dm3] 3L_13905741_SNP [dm6]	A	G	1.294e^-4	0.87	INTERGENIC
X	9184234	X_9184234_SNP [dm3] X_9290201_SNP [dm6]	T	C	1.304e^-4	0.873	INTRON lz	TF binding site mE1_TFBS_Kr
3L	22970380	3L_22970380_SNP [dm3] 3L_22977280_SNP [dm6]	C	T	1.313e^-4	0.873	INTERGENIC	transposable element FlyBase
3R	18844596	3R_18844596_SNP [dm3] 3R_23018874_SNP [dm6]	C	T	1.318e^-4	0.873	INTERGENIC
X	21905016	X_21905016_SNP [dm3] X_22503180_SNP [dm6]	T	A	1.324e^-4	0.873	INTRON l_1_G0196
X	17452260	X_17452260_INS [dm3] X_17558227_INS [dm6]	T	TT	1.326e^-4	0.873	INTRON CG43658
X	17452447	X_17452447_SNP [dm3] X_17558414_SNP [dm6]	T	C	1.328e^-4	0.873	INTRON CG43658
X	15289526	X_15289526_SNP [dm3] X_15395493_SNP [dm6]	T	A	1.339e^-4	0.873	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5476808	2L_5476808_SNP [dm3] 2L_5476808_SNP [dm6]	A	G	1.342e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	19129499	3L_19129499_SNP [dm3] 3L_19136399_SNP [dm6]	C	T	1.344e^-4	0.873	INTRON CG14082
4	866708	4_866708_SNP [dm3] 4_846082_SNP [dm6]	T	A	1.356e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25677527	3R_25677527_SNP [dm3] 3R_29851805_SNP [dm6]	C	T	1.359e^-4	0.873	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7394794	2L_7394794_SNP [dm3] 2L_7394794_SNP [dm6]	T	C	1.362e^-4	0.873	INTRON CG5160
3R	6115838	3R_6115838_SNP [dm3] 3R_10290116_SNP [dm6]	G	C	1.372e^-4	0.873	UPSTREAM CG43143 INTRON CG43143
2R	13610259	2R_13610259_SNP [dm3] 2R_17722754_SNP [dm6]	G	A	1.373e^-4	0.873	NON_SYNONYMOUS_CODING CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6530052	3L_6530052_SNP [dm3] 3L_6536952_SNP [dm6]	A	T	1.380e^-4	0.873	INTRON sfl
3L	22970400	3L_22970400_SNP [dm3] 3L_22977300_SNP [dm6]	C	G	1.386e^-4	0.873	INTERGENIC	transposable element FlyBase
3L	10832107	3L_10832107_SNP [dm3] 3L_10839007_SNP [dm6]	C	G	1.387e^-4	0.873	INTERGENIC
3R	20310947	3R_20310947_SNP [dm3] 3R_24485225_SNP [dm6]	G	C	1.390e^-4	0.873	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11655574	3L_11655574_INS [dm3] 3L_11662474_INS [dm6]	A	ACTA	1.394e^-4	0.873	INTRON CG32085
X	9012910	X_9012910_SNP [dm3] X_9118877_SNP [dm6]	G	C	1.401e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7335410	2L_7335410_SNP [dm3] 2L_7335410_SNP [dm6]	C	A	1.402e^-4	0.873	INTRON Wnt6
3L	6708480	3L_6708480_SNP [dm3] 3L_6715380_SNP [dm6]	A	G	1.404e^-4	0.873	INTRON ple	TF binding site mE1_TFBS_chinmo
2R	17104672	2R_17104672_SNP [dm3] 2R_21217167_SNP [dm6]	T	C	1.405e^-4	0.873	SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP
3L	14458350	3L_14458350_SNP [dm3] 3L_14465250_SNP [dm6]	A	G	1.420e^-4	0.879	INTRON bbg
2L	17550777	2L_17550777_SNP [dm3] 2L_17550777_SNP [dm6]	G	A	1.441e^-4	0.887	INTERGENIC
4	1255265	4_1255265_SNP [dm3] 4_1251539_SNP [dm6]	G	A	1.447e^-4	0.887	INTRON Caps
3R	6115509	3R_6115509_SNP [dm3] 3R_10289787_SNP [dm6]	T	C	1.447e^-4	0.887	UPSTREAM CG43143 INTRON CG43143
X	19760023	X_19760023_SNP [dm3] X_19865990_SNP [dm6]	C	T	1.453e^-4	0.887	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20194409	2R_20194409_SNP [dm3] 2R_24306886_SNP [dm6]	C	T	1.457e^-4	0.887	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	9707410	2L_9707410_SNP [dm3] 2L_9707410_SNP [dm6]	G	A	1.468e^-4	0.891	INTRON pelo
X	10146547	X_10146547_SNP [dm3] X_10252514_SNP [dm6]	G	A	1.485e^-4	0.897	INTRON Hk
X	20263186	X_20263186_SNP [dm3] X_20392159_SNP [dm6]	T	G	1.500e^-4	0.897	SYNONYMOUS_CODING l_1_G0004 DOWNSTREAM Syx16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13847623	3R_13847623_SNP [dm3] 3R_18021901_SNP [dm6]	T	G	1.502e^-4	0.897	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24822992	3R_24822992_SNP [dm3] 3R_28997270_SNP [dm6]	G	A	1.504e^-4	0.897	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6114716	3R_6114716_SNP [dm3] 3R_10288994_SNP [dm6]	G	T	1.505e^-4	0.897	INTRON CG43143	TF binding site mE1_TFBS_inv
X	10716102	X_10716102_SNP [dm3] X_10822069_SNP [dm6]	A	G	1.506e^-4	0.897	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	17010245	2R_17010245_SNP [dm3] 2R_21122740_SNP [dm6]	A	G	1.514e^-4	0.899	DOWNSTREAM CG4050 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5704622	X_5704622_SNP [dm3] X_5810589_SNP [dm6]	T	A	1.521e^-4	0.9	DOWNSTREAM Prosbeta2R1 EXON CR45529
2R	9463232	2R_9463232_SNP [dm3] 2R_13575727_SNP [dm6]	T	A	1.550e^-4	0.91	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2R	15754341	2R_15754341_DEL [dm3] 2R_19866836_DEL [dm6]	TTT	C	1.552e^-4	0.91	INTRON Obp56i
3R	25118496	3R_25118496_SNP [dm3] 3R_29292774_SNP [dm6]	T	G	1.553e^-4	0.91	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16928738	X_16928738_SNP [dm3] X_17034705_SNP [dm6]	C	T	1.576e^-4	0.914	INTRON CG45002
2L	10568057	2L_10568057_SNP [dm3] 2L_10568057_SNP [dm6]	T	G	1.620e^-4	0.914	DOWNSTREAM CG6138 INTRON Trim9
2R	15754345	2R_15754345_SNP [dm3] 2R_19866840_SNP [dm6]	C	G	1.620e^-4	0.914	INTRON Obp56i
2R	6151882	2R_6151882_DEL [dm3] 2R_10264377_DEL [dm6]	GGATTTG	G	1.624e^-4	0.914	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	17551090	2L_17551090_SNP [dm3] 2L_17551090_SNP [dm6]	T	C	1.628e^-4	0.914	INTERGENIC
2R	6642313	2R_6642313_SNP [dm3] 2R_10754808_SNP [dm6]	T	G	1.631e^-4	0.914	INTRON CG33144	TF binding site mE1_TFBS_chinmo
2L	13145016	2L_13145016_SNP [dm3] 2L_13145016_SNP [dm6]	T	A	1.638e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_inv
3L	22970402	3L_22970402_SNP [dm3] 3L_22977302_SNP [dm6]	T	A	1.639e^-4	0.914	INTERGENIC	transposable element FlyBase
2R	14995165	2R_14995165_SNP [dm3] 2R_19107660_SNP [dm6]	G	A	1.647e^-4	0.914	INTRON 5-HT1A
X	19759910	X_19759910_SNP [dm3] X_19865877_SNP [dm6]	G	C	1.648e^-4	0.914	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12384172	2L_12384172_SNP [dm3] 2L_12384172_SNP [dm6]	C	A	1.650e^-4	0.914	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14458378	3L_14458378_SNP [dm3] 3L_14465278_SNP [dm6]	G	A	1.660e^-4	0.914	INTRON bbg
2L	18444700	2L_18444700_SNP [dm3] 2L_18444700_SNP [dm6]	C	G	1.661e^-4	0.914	NON_SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9097735	2R_9097735_SNP [dm3] 2R_13210230_SNP [dm6]	G	C	1.664e^-4	0.914	UTR_3_PRIME FLASH DOWNSTREAM FLASH INTRON CG30058 & 2 others
X	19670848	X_19670848_SNP [dm3] X_19776815_SNP [dm6]	C	T	1.672e^-4	0.914	UTR_3_PRIME vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19438757	2L_19438757_SNP [dm3] 2L_19438757_SNP [dm6]	C	G	1.675e^-4	0.914	UTR_5_PRIME CG10237 INTRON CG10237
4	926015	4_926015_SNP [dm3] 4_905389_SNP [dm6]	C	G	1.676e^-4	0.914	UTR_5_PRIME unc-13 UPSTREAM unc-13 EXON CR43361	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	19759870	X_19759870_SNP [dm3] X_19865837_SNP [dm6]	A	T	1.678e^-4	0.914	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	970279	2L_970279_SNP [dm3] 2L_970279_SNP [dm6]	C	T	1.680e^-4	0.914	INTERGENIC
3L	3595405	3L_3595405_SNP [dm3] 3L_3595405_SNP [dm6]	T	G	1.689e^-4	0.914	INTRON Eip63E
X	13307158	X_13307158_SNP [dm3] X_13413125_SNP [dm6]	T	C	1.691e^-4	0.914	UPSTREAM Set2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	934849	4_934849_SNP [dm3] 4_914223_SNP [dm6]	C	T	1.705e^-4	0.914	INTERGENIC
3L	9552179	3L_9552179_SNP [dm3] 3L_9559079_SNP [dm6]	T	G	1.706e^-4	0.914	INTRON CG42673
2R	16228116	2R_16228116_SNP [dm3] 2R_20340611_SNP [dm6]	G	C	1.715e^-4	0.914	INTERGENIC
4	1028316	4_1028316_SNP [dm3] 4_1007690_SNP [dm6]	A	G	1.715e^-4	0.914	UTR_3_PRIME toy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	24359950	3R_24359950_SNP [dm3] 3R_28534228_SNP [dm6]	A	G	1.727e^-4	0.914	INTRON Ppn
2R	9463184	2R_9463184_DEL [dm3] 2R_13575679_DEL [dm6]	TA	T	1.730e^-4	0.914	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3R	15625202	3R_15625202_SNP [dm3] 3R_19799480_SNP [dm6]	T	A	1.740e^-4	0.914	INTRON bnl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6642340	2R_6642340_SNP [dm3] 2R_10754835_SNP [dm6]	G	T	1.740e^-4	0.914	INTRON CG33144	TF binding site mE1_TFBS_chinmo
2R	18118549	2R_18118549_SNP [dm3] 2R_22231044_SNP [dm6]	C	A	1.743e^-4	0.914	INTERGENIC
X	5304802	X_5304802_SNP [dm3] X_5410769_SNP [dm6]	T	A	1.748e^-4	0.914	UTR_5_PRIME NAAT1
2L	4706343	2L_4706343_SNP [dm3] 2L_4706343_SNP [dm6]	G	A	1.748e^-4	0.914	INTRON CG34351
3L	6282836	3L_6282836_SNP [dm3] 3L_6289736_SNP [dm6]	G	T	1.749e^-4	0.914	INTERGENIC
2R	16725529	2R_16725529_DEL [dm3] 2R_20838024_DEL [dm6]	CC	A	1.752e^-4	0.914	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	9822698	2R_9822698_SNP [dm3] 2R_13935193_SNP [dm6]	C	A	1.764e^-4	0.914	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7266237	3R_7266237_SNP [dm3] 3R_11440515_SNP [dm6]	C	T	1.766e^-4	0.914	SYNONYMOUS_CODING sals INTRON CG17230
3R	15625199	3R_15625199_SNP [dm3] 3R_19799477_SNP [dm6]	G	A	1.767e^-4	0.914	INTRON bnl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17902754	3L_17902754_SNP [dm3] 3L_17909654_SNP [dm6]	A	T	1.775e^-4	0.914	UTR_3_PRIME CG14353 & 1 other	TF binding site mE1_TFBS_sbb
2R	14754941	2R_14754941_SNP [dm3] 2R_18867436_SNP [dm6]	T	C	1.776e^-4	0.914	SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2R	18118553	2R_18118553_SNP [dm3] 2R_22231048_SNP [dm6]	T	G	1.779e^-4	0.914	INTERGENIC
4	943770	4_943770_SNP [dm3] 4_923144_SNP [dm6]	T	A	1.788e^-4	0.914	INTRON eIF4G
3L	11655628	3L_11655628_SNP [dm3] 3L_11662528_SNP [dm6]	G	A	1.797e^-4	0.914	INTRON CG32085
2R	9463238	2R_9463238_SNP [dm3] 2R_13575733_SNP [dm6]	G	C	1.800e^-4	0.914	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2R	9637001	2R_9637001_SNP [dm3] 2R_13749496_SNP [dm6]	T	C	1.803e^-4	0.914	DOWNSTREAM fas INTERGENIC
X	17576687	X_17576687_SNP [dm3] X_17682654_SNP [dm6]	C	T	1.813e^-4	0.914	START_GAINED chas UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10833101	2L_10833101_SNP [dm3] 2L_10833101_SNP [dm6]	C	T	1.821e^-4	0.914	INTRON Nos
3L	11655382	3L_11655382_SNP [dm3] 3L_11662282_SNP [dm6]	C	T	1.831e^-4	0.914	INTRON CG32085
X	14392011	X_14392011_SNP [dm3] X_14497978_SNP [dm6]	T	G	1.835e^-4	0.914	DOWNSTREAM CG12540 INTERGENIC
3L	18091808	3L_18091808_SNP [dm3] 3L_18098708_SNP [dm6]	A	T	1.843e^-4	0.914	INTRON CG13698
2R	14189286	2R_14189286_SNP [dm3] 2R_18301781_SNP [dm6]	C	A	1.843e^-4	0.914	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3437324	3L_3437324_SNP [dm3] 3L_3437324_SNP [dm6]	A	C	1.849e^-4	0.914	INTRON eIF5B
2R	16034838	2R_16034838_SNP [dm3] 2R_20147333_SNP [dm6]	C	T	1.860e^-4	0.914	DOWNSTREAM CG11041 INTERGENIC
2R	18537681	2R_18537681_SNP [dm3] 2R_22650176_SNP [dm6]	G	A	1.865e^-4	0.914	UPSTREAM nsr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10624568	3L_10624568_SNP [dm3] 3L_10631468_SNP [dm6]	G	T	1.872e^-4	0.914	UPSTREAM CG42535 INTRON CG34001 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	4671233	2L_4671233_SNP [dm3] 2L_4671233_SNP [dm6]	C	T	1.872e^-4	0.914	INTERGENIC
X	15659449	X_15659449_SNP [dm3] X_15765416_SNP [dm6]	C	G	1.881e^-4	0.914	DOWNSTREAM CG8952 INTRON CG17209
3L	6579318	3L_6579318_SNP [dm3] 3L_6586218_SNP [dm6]	A	G	1.882e^-4	0.914	INTRON CG18769 & 1 other
4	1010224	4_1010224_SNP [dm3] 4_989598_SNP [dm6]	G	A	1.884e^-4	0.914	UPSTREAM toy INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2676893	3L_2676893_SNP [dm3] 3L_2676893_SNP [dm6]	C	T	1.887e^-4	0.914	INTRON Fife
2L	17479283	2L_17479283_SNP [dm3] 2L_17479283_SNP [dm6]	C	T	1.895e^-4	0.914	SYNONYMOUS_CODING fws	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4161624	2R_4161624_SNP [dm3] 2R_8274119_SNP [dm6]	C	A	1.901e^-4	0.914	INTERGENIC
3L	20370283	3L_20370283_SNP [dm3] 3L_20377183_SNP [dm6]	T	C	1.906e^-4	0.914	UPSTREAM RhoBTB INTRON RhoBTB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_ttk
2R	14754959	2R_14754959_SNP [dm3] 2R_18867454_SNP [dm6]	A	G	1.915e^-4	0.914	SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
X	5905333	X_5905333_DEL [dm3] X_6011300_DEL [dm6]	ATACTAC	G	1.918e^-4	0.914	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13893671	2L_13893671_SNP [dm3] 2L_13893671_SNP [dm6]	T	A	1.920e^-4	0.914	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17725771	2R_17725771_SNP [dm3] 2R_21838266_SNP [dm6]	C	T	1.923e^-4	0.914	NON_SYNONYMOUS_CODING CG4372
3L	13166286	3L_13166286_INS [dm3] 3L_13173186_INS [dm6]	A	AAAG	1.931e^-4	0.914	INTERGENIC
3R	10657594	3R_10657594_SNP [dm3] 3R_14831872_SNP [dm6]	A	C	1.933e^-4	0.914	INTRON btsz
X	3037341	X_3037341_SNP [dm3] X_3143308_SNP [dm6]	A	G	1.947e^-4	0.914	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6679511	2R_6679511_SNP [dm3] 2R_10792006_SNP [dm6]	G	A	1.948e^-4	0.914	NON_SYNONYMOUS_CODING mthl13 INTRON CG33144
2L	19619285	2L_19619285_SNP [dm3] 2L_19619285_SNP [dm6]	A	G	1.953e^-4	0.914	INTRON Lar
2L	18421659	2L_18421659_SNP [dm3] 2L_18421659_SNP [dm6]	C	A	1.960e^-4	0.914	INTERGENIC
3R	25052902	3R_25052902_SNP [dm3] 3R_29227180_SNP [dm6]	G	T	1.968e^-4	0.914	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2R	11656347	2R_11656347_SNP [dm3] 2R_15768842_SNP [dm6]	C	T	1.972e^-4	0.914	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5704062	X_5704062_SNP [dm3] X_5810029_SNP [dm6]	C	A	1.976e^-4	0.914	NON_SYNONYMOUS_CODING Prosbeta2R1 UPSTREAM CR45529
2L	4438322	2L_4438322_SNP [dm3] 2L_4438322_SNP [dm6]	C	G	1.980e^-4	0.914	DOWNSTREAM CG43056 INTRON CG15431
3R	14415846	3R_14415846_SNP [dm3] 3R_18590124_SNP [dm6]	C	G	1.982e^-4	0.914	SYNONYMOUS_CODING CG7694 UPSTREAM qin DOWNSTREAM fray
3L	13898177	3L_13898177_SNP [dm3] 3L_13905077_SNP [dm6]	G	A	1.984e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14686804	2L_14686804_SNP [dm3] 2L_14686804_SNP [dm6]	T	C	1.998e^-4	0.914	INTRON osp
3R	25052909	3R_25052909_SNP [dm3] 3R_29227187_SNP [dm6]	C	A	2.003e^-4	0.914	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
4	864789	4_864789_SNP [dm3] 4_844163_SNP [dm6]	G	T	2.007e^-4	0.914	DOWNSTREAM CR33797 INTRON fd102C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10026019	2R_10026019_SNP [dm3] 2R_14138514_SNP [dm6]	A	C	2.011e^-4	0.914	INTRON Prosap
2L	6769828	2L_6769828_SNP [dm3] 2L_6769828_SNP [dm6]	T	G	2.012e^-4	0.914	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14691030	3R_14691030_SNP [dm3] 3R_18865308_SNP [dm6]	G	A	2.015e^-4	0.914	INTERGENIC
2L	2516673	2L_2516673_SNP [dm3] 2L_2516673_SNP [dm6]	A	G	2.018e^-4	0.914	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5905341	X_5905341_SNP [dm3] X_6011308_SNP [dm6]	C	G	2.026e^-4	0.914	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4507912	X_4507912_SNP [dm3] X_4613879_SNP [dm6]	G	T	2.032e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12130257	2R_12130257_SNP [dm3] 2R_16242752_SNP [dm6]	T	A	2.034e^-4	0.914	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3L	8696117	3L_8696117_SNP [dm3] 3L_8703017_SNP [dm6]	C	G	2.036e^-4	0.914	INTERGENIC
2R	17618225	2R_17618225_SNP [dm3] 2R_21730720_SNP [dm6]	A	G	2.037e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5642538	3L_5642538_SNP [dm3] 3L_5649438_SNP [dm6]	G	A	2.037e^-4	0.914	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
2R	13525270	2R_13525270_SNP [dm3] 2R_17637765_SNP [dm6]	G	C	2.042e^-4	0.914	INTRON CG10936
2R	6286303	2R_6286303_SNP [dm3] 2R_10398798_SNP [dm6]	A	C	2.043e^-4	0.914	INTRON CG42732
2L	2900515	2L_2900515_SNP [dm3] 2L_2900515_SNP [dm6]	G	A	2.051e^-4	0.914	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19911314	2L_19911314_SNP [dm3] 2L_19911314_SNP [dm6]	A	G	2.053e^-4	0.914	DOWNSTREAM TotF INTRON sick EXON CR43097
3L	17907604	3L_17907604_SNP [dm3] 3L_17914504_SNP [dm6]	A	T	2.066e^-4	0.914	INTERGENIC
2R	8241131	2R_8241131_SNP [dm3] 2R_12353626_SNP [dm6]	C	T	2.067e^-4	0.914	SYNONYMOUS_CODING CG30047	TF binding site BDTNP1_TFBS_prd
X	5302607	X_5302607_SNP [dm3] X_5408574_SNP [dm6]	G	A	2.069e^-4	0.914	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
X	2716249	X_2716249_SNP [dm3] X_2822216_SNP [dm6]	C	T	2.075e^-4	0.914	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15648053	3R_15648053_SNP [dm3] 3R_19822331_SNP [dm6]	A	G	2.076e^-4	0.914	INTRON bnl
X	17451776	X_17451776_SNP [dm3] X_17557743_SNP [dm6]	T	C	2.096e^-4	0.914	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	19880690	X_19880690_SNP [dm3] X_19986657_SNP [dm6]	A	C	2.102e^-4	0.914	INTERGENIC
X	1019139	X_1019139_SNP [dm3] X_1125106_SNP [dm6]	T	C	2.107e^-4	0.914	INTRON CG3655
2L	13893643	2L_13893643_SNP [dm3] 2L_13893643_SNP [dm6]	A	G	2.110e^-4	0.914	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17105172	2R_17105172_INS [dm3] 2R_21217667_INS [dm6]	C	CGTAATCAGTTGC...	2.118e^-4	0.914	UTR_5_PRIME CG15661 DOWNSTREAM ASPP INTRON CG15661
3R	20393604	3R_20393604_SNP [dm3] 3R_24567882_SNP [dm6]	A	G	2.120e^-4	0.914	INTRON CG13624
3R	14828244	3R_14828244_SNP [dm3] 3R_19002522_SNP [dm6]	G	A	2.122e^-4	0.914	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14715772	2R_14715772_SNP [dm3] 2R_18828267_SNP [dm6]	G	A	2.125e^-4	0.914	INTRON CG15097
X	20960226	X_20960226_DEL [dm3] X_21089199_DEL [dm6]	TCAATATCCCAGCGACAAAC...	T	2.135e^-4	0.914	INTERGENIC
X	18910161	X_18910161_SNP [dm3] X_19016128_SNP [dm6]	T	A	2.135e^-4	0.914	INTRON CG43759
3L	6650043	3L_6650043_SNP [dm3] 3L_6656943_SNP [dm6]	C	T	2.140e^-4	0.914	INTERGENIC
X	17451775	X_17451775_SNP [dm3] X_17557742_SNP [dm6]	A	T	2.142e^-4	0.914	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	13845627	3R_13845627_SNP [dm3] 3R_18019905_SNP [dm6]	A	C	2.146e^-4	0.914	INTRON DNaseII
4	1059889	4_1059889_SNP [dm3] 4_1039263_SNP [dm6]	T	C	2.150e^-4	0.914	INTRON CaMKII	transposable element FlyBase
3R	10169125	3R_10169125_SNP [dm3] 3R_14343403_SNP [dm6]	A	G	2.156e^-4	0.914	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18894043	2R_18894043_INS [dm3] 2R_23006520_INS [dm6]	G	GTG	2.156e^-4	0.914	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	25677503	3R_25677503_SNP [dm3] 3R_29851781_SNP [dm6]	G	A	2.162e^-4	0.914	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18118535	2R_18118535_DEL [dm3] 2R_22231030_DEL [dm6]	GTCATTCCAACG...	G	2.183e^-4	0.914	INTERGENIC
2R	14222169	2R_14222169_SNP [dm3] 2R_18334664_SNP [dm6]	A	G	2.187e^-4	0.914	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17503308	2L_17503308_INS [dm3] 2L_17503308_INS [dm6]	A	AA	2.196e^-4	0.914	INTRON Dhc36C
4	1270051	4_1270051_SNP [dm3] 4_1266325_SNP [dm6]	A	T	2.209e^-4	0.914	INTRON Caps
2L	1362242	2L_1362242_SNP [dm3] 2L_1362242_SNP [dm6]	A	C	2.216e^-4	0.914	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3885785	3L_3885785_SNP [dm3] 3L_3885785_SNP [dm6]	C	T	2.217e^-4	0.914	UPSTREAM CR43917 INTERGENIC
3R	24673906	3R_24673906_SNP [dm3] 3R_28848184_SNP [dm6]	T	A	2.224e^-4	0.914	INTRON spg
3R	13847681	3R_13847681_SNP [dm3] 3R_18021959_SNP [dm6]	C	A	2.234e^-4	0.914	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24552405	3R_24552405_SNP [dm3] 3R_28726683_SNP [dm6]	G	C	2.234e^-4	0.914	INTRON htt
X	13665096	X_13665096_INS [dm3] X_13771063_INS [dm6]	T	TGT	2.240e^-4	0.914	INTRON rdgB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19742402	2L_19742402_SNP [dm3] 2L_19742402_SNP [dm6]	G	C	2.241e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
X	5254001	X_5254001_SNP [dm3] X_5359968_SNP [dm6]	A	T	2.252e^-4	0.914	INTRON SK
2L	21039786	2L_21039786_SNP [dm3] 2L_21039786_SNP [dm6]	C	T	2.258e^-4	0.914	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12211733	3L_12211733_SNP [dm3] 3L_12218633_SNP [dm6]	G	T	2.260e^-4	0.914	INTRON app
2R	9463234	2R_9463234_SNP [dm3] 2R_13575729_SNP [dm6]	C	A	2.262e^-4	0.914	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	3119757	3L_3119757_SNP [dm3] 3L_3119757_SNP [dm6]	A	G	2.262e^-4	0.914	INTRON prominin-like
4	1155347	4_1155347_SNP [dm3] 4_1134721_SNP [dm6]	A	G	2.263e^-4	0.914	UTR_3_PRIME CG11155 INTRON CG11155	transposable element FlyBase
3R	24776005	3R_24776005_SNP [dm3] 3R_28950283_SNP [dm6]	A	T	2.270e^-4	0.914	INTRON CG14521
3L	16012821	3L_16012821_SNP [dm3] 3L_16019721_SNP [dm6]	C	A	2.274e^-4	0.914	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12285625	2L_12285625_SNP [dm3] 2L_12285625_SNP [dm6]	G	A	2.275e^-4	0.914	INTRON aret
3L	17816645	3L_17816645_SNP [dm3] 3L_17823545_SNP [dm6]	T	C	2.275e^-4	0.914	UPSTREAM Ir75c INTRON Grd
2L	13893684	2L_13893684_SNP [dm3] 2L_13893684_SNP [dm6]	G	T	2.294e^-4	0.914	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	9595665	2R_9595665_SNP [dm3] 2R_13708160_SNP [dm6]	C	G	2.299e^-4	0.914	INTRON fas
2R	7563007	2R_7563007_SNP [dm3] 2R_11675502_SNP [dm6]	T	C	2.302e^-4	0.914	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12035289	3L_12035289_SNP [dm3] 3L_12042189_SNP [dm6]	T	C	2.306e^-4	0.914	UPSTREAM CG6793 INTRON rols
2R	9463132	2R_9463132_SNP [dm3] 2R_13575627_SNP [dm6]	T	A	2.307e^-4	0.914	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11261467	2R_11261467_SNP [dm3] 2R_15373962_SNP [dm6]	A	T	2.308e^-4	0.914	UPSTREAM CR43276 DOWNSTREAM CR43105 EXON CR43275	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	9824826	3L_9824826_SNP [dm3] 3L_9831726_SNP [dm6]	A	G	2.309e^-4	0.914	INTRON CG43897
2L	972807	2L_972807_SNP [dm3] 2L_972807_SNP [dm6]	A	T	2.314e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15328798	2L_15328798_SNP [dm3] 2L_15328798_SNP [dm6]	A	T	2.316e^-4	0.914	INTERGENIC
2L	13331781	2L_13331781_SNP [dm3] 2L_13331781_SNP [dm6]	T	C	2.318e^-4	0.914	UPSTREAM CG43778 INTERGENIC
3L	8591738	3L_8591738_SNP [dm3] 3L_8598638_SNP [dm6]	C	G	2.320e^-4	0.914	NON_SYNONYMOUS_CODING CG43078 DOWNSTREAM Nelf-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12406341	2L_12406341_SNP [dm3] 2L_12406341_SNP [dm6]	A	T	2.326e^-4	0.914	DOWNSTREAM vir-1 INTRON vir-1
2L	4323416	2L_4323416_DEL [dm3] 2L_4323416_DEL [dm6]	TC	A	2.333e^-4	0.914	UTR_3_PRIME tutl DOWNSTREAM tutl
X	1050834	X_1050834_SNP [dm3] X_1156801_SNP [dm6]	T	C	2.336e^-4	0.914	INTERGENIC
2L	16376438	2L_16376438_SNP [dm3] 2L_16376438_SNP [dm6]	A	T	2.343e^-4	0.914	INTERGENIC
2L	19742424	2L_19742424_SNP [dm3] 2L_19742424_SNP [dm6]	C	T	2.352e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906
3R	17905595	3R_17905595_SNP [dm3] 3R_22079873_SNP [dm6]	G	A	2.353e^-4	0.914	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2R	7419917	2R_7419917_SNP [dm3] 2R_11532412_SNP [dm6]	T	C	2.355e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3597888	3L_3597888_SNP [dm3] 3L_3597888_SNP [dm6]	C	T	2.359e^-4	0.914	INTRON Eip63E	TF binding site mE1_TFBS_cad
2L	15096143	2L_15096143_DEL [dm3] 2L_15096143_DEL [dm6]	CA	G	2.364e^-4	0.914	UTR_3_PRIME CG15270
3R	26327993	3R_26327993_SNP [dm3] 3R_30502271_SNP [dm6]	G	T	2.367e^-4	0.914	INTRON CG31371
X	3319757	X_3319757_SNP [dm3] X_3425724_SNP [dm6]	C	A	2.369e^-4	0.914	INTRON CR44999 & 1 other
3R	17414208	3R_17414208_SNP [dm3] 3R_21588486_SNP [dm6]	C	T	2.374e^-4	0.914	INTRON InR
X	13306997	X_13306997_SNP [dm3] X_13412964_SNP [dm6]	A	G	2.375e^-4	0.914	UPSTREAM Set2 & 1 other INTRON CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24344880	3R_24344880_SNP [dm3] 3R_28519158_SNP [dm6]	C	T	2.377e^-4	0.914	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2R	10476060	2R_10476060_SNP [dm3] 2R_14588555_SNP [dm6]	T	A	2.390e^-4	0.914	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19391092	2L_19391092_SNP [dm3] 2L_19391092_SNP [dm6]	A	T	2.398e^-4	0.914	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_chinmo
X	14389565	X_14389565_SNP [dm3] X_14495532_SNP [dm6]	C	T	2.398e^-4	0.914	UPSTREAM CG12540 INTERGENIC
2L	4676227	2L_4676227_SNP [dm3] 2L_4676227_SNP [dm6]	T	C	2.401e^-4	0.914	INTERGENIC
2L	7364436	2L_7364436_SNP [dm3] 2L_7364436_SNP [dm6]	G	T	2.410e^-4	0.914	INTRON Wnt10
2R	15948934	2R_15948934_SNP [dm3] 2R_20061429_SNP [dm6]	A	G	2.439e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3678052	2L_3678052_SNP [dm3] 2L_3678052_SNP [dm6]	C	T	2.449e^-4	0.914	INTRON CG34340
2R	19533291	2R_19533291_SNP [dm3] 2R_23645768_SNP [dm6]	C	T	2.452e^-4	0.914	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	19742415	2L_19742415_INS [dm3] 2L_19742415_INS [dm6]	G	GCTCTTTTCCTCTTTAATAG...	2.460e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906
3L	17744794	3L_17744794_SNP [dm3] 3L_17751694_SNP [dm6]	T	G	2.462e^-4	0.914	DOWNSTREAM Adgf-A INTERGENIC
3L	17805303	3L_17805303_SNP [dm3] 3L_17812203_SNP [dm6]	G	A	2.469e^-4	0.914	INTRON cln3
X	20238828	X_20238828_SNP [dm3] X_20367801_SNP [dm6]	G	A	2.482e^-4	0.914	INTERGENIC
2R	13604006	2R_13604006_SNP [dm3] 2R_17716501_SNP [dm6]	T	C	2.484e^-4	0.914	START_GAINED CG6424 UTR_5_PRIME CG6424 UPSTREAM CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13164866	3L_13164866_SNP [dm3] 3L_13171766_SNP [dm6]	T	C	2.486e^-4	0.914	INTERGENIC
3L	2806985	3L_2806985_SNP [dm3] 3L_2806985_SNP [dm6]	A	C	2.486e^-4	0.914	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	7335701	2L_7335701_SNP [dm3] 2L_7335701_SNP [dm6]	G	A	2.487e^-4	0.914	INTRON Wnt6
X	16662274	X_16662274_SNP [dm3] X_16768241_SNP [dm6]	A	G	2.490e^-4	0.914	INTRON if
3R	24344742	3R_24344742_SNP [dm3] 3R_28519020_SNP [dm6]	T	A	2.501e^-4	0.914	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2R	15470885	2R_15470885_SNP [dm3] 2R_19583380_SNP [dm6]	T	C	2.502e^-4	0.914	INTRON sm
X	1050828	X_1050828_SNP [dm3] X_1156795_SNP [dm6]	T	A	2.502e^-4	0.914	INTERGENIC
2L	14132401	2L_14132401_SNP [dm3] 2L_14132401_SNP [dm6]	A	G	2.503e^-4	0.914	INTERGENIC
3L	12035373	3L_12035373_SNP [dm3] 3L_12042273_SNP [dm6]	T	A	2.507e^-4	0.914	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
4	1177216	4_1177216_SNP [dm3] 4_1156590_SNP [dm6]	C	A	2.509e^-4	0.914	INTRON CG32017 & 1 other
2L	19628563	2L_19628563_SNP [dm3] 2L_19628563_SNP [dm6]	G	C	2.516e^-4	0.914	INTRON Lar
2L	19742495	2L_19742495_SNP [dm3] 2L_19742495_SNP [dm6]	C	A	2.517e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906
3L	17812831	3L_17812831_SNP [dm3] 3L_17819731_SNP [dm6]	T	G	2.519e^-4	0.914	NON_SYNONYMOUS_CODING Ir75b DOWNSTREAM Ir75c
2R	15033575	2R_15033575_SNP [dm3] 2R_19146070_SNP [dm6]	A	G	2.520e^-4	0.914	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
X	2553868	X_2553868_SNP [dm3] X_2659835_SNP [dm6]	C	T	2.523e^-4	0.914	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14327371	3R_14327371_DEL [dm3] 3R_18501649_DEL [dm6]	ACGATTATATATAAACGATT...	A	2.533e^-4	0.914	INTRON fru
3R	24327201	3R_24327201_SNP [dm3] 3R_28501479_SNP [dm6]	A	G	2.533e^-4	0.914	INTRON Dhc98D
4	874097	4_874097_SNP [dm3] 4_853471_SNP [dm6]	T	C	2.540e^-4	0.914	DOWNSTREAM CG11148 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18795543	2R_18795543_SNP [dm3] 2R_22908020_SNP [dm6]	G	A	2.541e^-4	0.914	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19645896	2L_19645896_SNP [dm3] 2L_19645896_SNP [dm6]	C	A	2.544e^-4	0.914	INTRON Lar
2R	10021899	2R_10021899_INS [dm3] 2R_14134394_INS [dm6]	C	CTG	2.554e^-4	0.914	INTRON Prosap
3L	1269395	3L_1269395_SNP [dm3] 3L_1269395_SNP [dm6]	T	C	2.556e^-4	0.914	INTRON CG9134
3L	13396047	3L_13396047_SNP [dm3] 3L_13402947_SNP [dm6]	G	T	2.557e^-4	0.914	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17608201	2R_17608201_SNP [dm3] 2R_21720696_SNP [dm6]	A	C	2.558e^-4	0.914	UPSTREAM LBR & 1 other INTRON LBR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	14637636	3L_14637636_SNP [dm3] 3L_14644536_SNP [dm6]	G	A	2.558e^-4	0.914	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1785802	2L_1785802_SNP [dm3] 2L_1785802_SNP [dm6]	T	C	2.561e^-4	0.914	DOWNSTREAM Gr22e INTERGENIC
2L	12570559	2L_12570559_SNP [dm3] 2L_12570559_SNP [dm6]	T	C	2.573e^-4	0.914	DOWNSTREAM CR44598 & 1 other INTERGENIC
3L	11370458	3L_11370458_SNP [dm3] 3L_11377358_SNP [dm6]	G	A	2.574e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	17100876	2R_17100876_SNP [dm3] 2R_21213371_SNP [dm6]	C	G	2.577e^-4	0.914	NON_SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245	TF binding site mE1_TFBS_sens
3L	16774213	3L_16774213_SNP [dm3] 3L_16781113_SNP [dm6]	C	A	2.588e^-4	0.914	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
X	14392021	X_14392021_SNP [dm3] X_14497988_SNP [dm6]	A	T	2.595e^-4	0.914	DOWNSTREAM CG12540 INTERGENIC
3L	10635334	3L_10635334_SNP [dm3] 3L_10642234_SNP [dm6]	A	T	2.610e^-4	0.914	NON_SYNONYMOUS_CODING CG14154 INTRON CG32066
2L	14162024	2L_14162024_SNP [dm3] 2L_14162024_SNP [dm6]	T	C	2.613e^-4	0.914	SYNONYMOUS_CODING CG43332	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1049634	X_1049634_SNP [dm3] X_1155601_SNP [dm6]	G	A	2.614e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7460755	3R_7460755_SNP [dm3] 3R_11635033_SNP [dm6]	T	A	2.618e^-4	0.914	INTRON Csk
2R	9072487	2R_9072487_SNP [dm3] 2R_13184982_SNP [dm6]	G	T	2.624e^-4	0.914	SYNONYMOUS_CODING Kdm4B & 1 other UTR_5_PRIME CG17724 DOWNSTREAM Kdm4B
3L	12900543	3L_12900543_SNP [dm3] 3L_12907443_SNP [dm6]	C	T	2.625e^-4	0.914	INTERGENIC
2R	16043604	2R_16043604_SNP [dm3] 2R_20156099_SNP [dm6]	A	T	2.630e^-4	0.914	INTERGENIC
4	936942	4_936942_SNP [dm3] 4_916316_SNP [dm6]	G	T	2.642e^-4	0.914	INTRON eIF4G	TF binding site mE1_TFBS_sens
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	2.651e^-4	0.914	INTRON mew
2R	10475996	2R_10475996_SNP [dm3] 2R_14588491_SNP [dm6]	A	C	2.660e^-4	0.914	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25074734	3R_25074734_SNP [dm3] 3R_29249012_SNP [dm6]	T	C	2.661e^-4	0.914	UPSTREAM SP1029 INTRON SP1029
2R	8090650	2R_8090650_SNP [dm3] 2R_12203145_SNP [dm6]	G	A	2.676e^-4	0.914	INTERGENIC
X	17450657	X_17450657_SNP [dm3] X_17556624_SNP [dm6]	G	T	2.688e^-4	0.914	INTRON CG43658
X	16290896	X_16290896_SNP [dm3] X_16396863_SNP [dm6]	G	A	2.693e^-4	0.914	NON_SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	9645127	3L_9645127_SNP [dm3] 3L_9652027_SNP [dm6]	T	G	2.695e^-4	0.914	INTRON fry & 1 other
3L	3595357	3L_3595357_SNP [dm3] 3L_3595357_SNP [dm6]	G	C	2.696e^-4	0.914	INTRON Eip63E
2R	15115846	2R_15115846_SNP [dm3] 2R_19228341_SNP [dm6]	T	A	2.699e^-4	0.914	NON_SYNONYMOUS_CODING CG7137 UPSTREAM cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	5122336	2R_5122336_SNP [dm3] 2R_9234831_SNP [dm6]	G	A	2.709e^-4	0.914	NON_SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13145017	2L_13145017_SNP [dm3] 2L_13145017_SNP [dm6]	G	A	2.711e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_inv
3R	17902791	3R_17902791_SNP [dm3] 3R_22077069_SNP [dm6]	G	A	2.713e^-4	0.914	INTRON how	TF binding site mE1_TFBS_kn
3L	10635215	3L_10635215_SNP [dm3] 3L_10642115_SNP [dm6]	C	T	2.719e^-4	0.914	SYNONYMOUS_CODING CG14154 INTRON CG32066
2L	17022063	2L_17022063_SNP [dm3] 2L_17022063_SNP [dm6]	A	G	2.720e^-4	0.914	INTERGENIC
2L	19742462	2L_19742462_SNP [dm3] 2L_19742462_SNP [dm6]	T	C	2.727e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906
2L	13145021	2L_13145021_SNP [dm3] 2L_13145021_SNP [dm6]	T	C	2.730e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6769806	2L_6769806_SNP [dm3] 2L_6769806_SNP [dm6]	A	T	2.731e^-4	0.914	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17900714	3L_17900714_SNP [dm3] 3L_17907614_SNP [dm6]	T	C	2.731e^-4	0.914	UTR_5_PRIME Prestin UPSTREAM CG14353	TF binding site mE1_TFBS_Ubx
2L	19740892	2L_19740892_SNP [dm3] 2L_19740892_SNP [dm6]	A	C	2.733e^-4	0.914	EXON CR44906	TF binding site mE1_TFBS_Trl
2L	3568132	2L_3568132_SNP [dm3] 2L_3568132_SNP [dm6]	C	T	2.736e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	1882436	X_1882436_SNP [dm3] X_1988403_SNP [dm6]	A	T	2.741e^-4	0.914	INTRON Hr4
2L	3514297	2L_3514297_SNP [dm3] 2L_3514297_SNP [dm6]	C	T	2.759e^-4	0.914	SYNONYMOUS_CODING CG33123 UPSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6154241	X_6154241_SNP [dm3] X_6260208_SNP [dm6]	C	A	2.766e^-4	0.914	UPSTREAM CG3781 INTRON schlank
2L	5162741	2L_5162741_SNP [dm3] 2L_5162741_SNP [dm6]	A	C	2.766e^-4	0.914	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	1050824	X_1050824_SNP [dm3] X_1156791_SNP [dm6]	T	G	2.770e^-4	0.914	INTERGENIC
3L	11656212	3L_11656212_SNP [dm3] 3L_11663112_SNP [dm6]	A	T	2.770e^-4	0.914	INTRON CG32085
3L	12418295	3L_12418295_SNP [dm3] 3L_12425195_SNP [dm6]	C	A	2.773e^-4	0.914	INTRON toe	TF binding site mE1_TFBS_cad
3L	9545878	3L_9545878_SNP [dm3] 3L_9552778_SNP [dm6]	T	A	2.773e^-4	0.914	INTRON CG42673
3L	9616325	3L_9616325_SNP [dm3] 3L_9623225_SNP [dm6]	G	A	2.778e^-4	0.914	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1415852	3R_1415852_SNP [dm3] 3R_5590130_SNP [dm6]	C	A	2.778e^-4	0.914	SYNONYMOUS_CODING noi DOWNSTREAM rev7	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9463144	2R_9463144_SNP [dm3] 2R_13575639_SNP [dm6]	T	A	2.792e^-4	0.914	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	14026504	X_14026504_SNP [dm3] X_14132471_SNP [dm6]	C	G	2.792e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_HSA
4	1028950	4_1028950_SNP [dm3] 4_1008324_SNP [dm6]	C	G	2.796e^-4	0.914	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	2716263	X_2716263_SNP [dm3] X_2822230_SNP [dm6]	C	T	2.804e^-4	0.914	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	710481	2L_710481_SNP [dm3] 2L_710481_SNP [dm6]	T	A	2.805e^-4	0.914	UPSTREAM CR44988 INTRON ds
2L	6843103	2L_6843103_SNP [dm3] 2L_6843103_SNP [dm6]	A	G	2.805e^-4	0.914	INTERGENIC
2R	6680826	2R_6680826_SNP [dm3] 2R_10793321_SNP [dm6]	T	A	2.805e^-4	0.914	DOWNSTREAM mthl13 INTRON CG33144
X	4902171	X_4902171_SNP [dm3] X_5008138_SNP [dm6]	A	T	2.806e^-4	0.914	INTRON CR44833
2R	11751801	2R_11751801_SNP [dm3] 2R_15864296_SNP [dm6]	C	A	2.808e^-4	0.914	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24060943	3R_24060943_SNP [dm3] 3R_28235221_SNP [dm6]	G	T	2.808e^-4	0.914	INTRON CG34354
3R	7949522	3R_7949522_SNP [dm3] 3R_12123800_SNP [dm6]	A	G	2.809e^-4	0.914	SYNONYMOUS_CODING CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16542801	2R_16542801_DEL [dm3] 2R_20655296_DEL [dm6]	GGTAACGG	G	2.821e^-4	0.914	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	14759254	2R_14759254_SNP [dm3] 2R_18871749_SNP [dm6]	C	G	2.823e^-4	0.914	INTERGENIC
2L	10568066	2L_10568066_SNP [dm3] 2L_10568066_SNP [dm6]	A	C	2.830e^-4	0.914	DOWNSTREAM CG6138 INTRON Trim9
3R	16612089	3R_16612089_SNP [dm3] 3R_20786367_SNP [dm6]	A	C	2.835e^-4	0.914	INTRON Syp
3L	15321449	3L_15321449_SNP [dm3] 3L_15328349_SNP [dm6]	T	A	2.837e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8228971	2R_8228971_SNP [dm3] 2R_12341466_SNP [dm6]	T	A	2.856e^-4	0.914	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4974850	2L_4974850_SNP [dm3] 2L_4974850_SNP [dm6]	C	T	2.875e^-4	0.914	SYNONYMOUS_CODING mRpL28 UPSTREAM l_2_05714 DOWNSTREAM Gmd	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	5937840	X_5937840_SNP [dm3] X_6043807_SNP [dm6]	C	T	2.878e^-4	0.914	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17816536	3L_17816536_SNP [dm3] 3L_17823436_SNP [dm6]	A	G	2.880e^-4	0.914	START_GAINED Grd UTR_5_PRIME Grd UPSTREAM Ir75c
4	891175	4_891175_SNP [dm3] 4_870549_SNP [dm6]	A	G	2.885e^-4	0.914	UTR_3_PRIME unc-13 DOWNSTREAM unc-13 EXON CR43425
2R	4662886	2R_4662886_SNP [dm3] 2R_8775381_SNP [dm6]	T	C	2.887e^-4	0.914	INTERGENIC
3L	4300958	3L_4300958_SNP [dm3] 3L_4300958_SNP [dm6]	G	A	2.887e^-4	0.914	INTRON dyl
2L	19742454	2L_19742454_SNP [dm3] 2L_19742454_SNP [dm6]	T	A	2.895e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906
2R	10021877	2R_10021877_SNP [dm3] 2R_14134372_SNP [dm6]	T	G	2.900e^-4	0.914	INTRON Prosap
3L	11655578	3L_11655578_SNP [dm3] 3L_11662478_SNP [dm6]	G	T	2.905e^-4	0.914	INTRON CG32085
3L	9426046	3L_9426046_SNP [dm3] 3L_9432946_SNP [dm6]	G	A	2.905e^-4	0.914	DOWNSTREAM CG42526 INTRON MTF-1
3R	10650757	3R_10650757_SNP [dm3] 3R_14825035_SNP [dm6]	A	G	2.917e^-4	0.914	SPLICE_SITE_DONOR btsz INTRON btsz
3L	10996891	3L_10996891_SNP [dm3] 3L_11003791_SNP [dm6]	A	G	2.921e^-4	0.914	INTRON klu
3L	6861801	3L_6861801_SNP [dm3] 3L_6868701_SNP [dm6]	T	C	2.927e^-4	0.914	INTERGENIC
2R	10475923	2R_10475923_INS [dm3] 2R_14588418_INS [dm6]	A	AATGGCAAACTT...	2.929e^-4	0.914	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5757372	X_5757372_SNP [dm3] X_5863339_SNP [dm6]	T	C	2.931e^-4	0.914	INTERGENIC
3L	10356185	3L_10356185_SNP [dm3] 3L_10363085_SNP [dm6]	C	A	2.934e^-4	0.914	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3649783	2L_3649783_DEL [dm3] 2L_3649783_DEL [dm6]	AGTGTA	A	2.942e^-4	0.914	INTRON for
X	5301967	X_5301967_SNP [dm3] X_5407934_SNP [dm6]	T	A	2.951e^-4	0.914	SPLICE_SITE_REGION NAAT1 INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	19742399	2L_19742399_INS [dm3] 2L_19742399_INS [dm6]	G	GG	2.951e^-4	0.914	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
2R	6699779	2R_6699779_SNP [dm3] 2R_10812274_SNP [dm6]	T	C	2.952e^-4	0.914	UTR_3_PRIME CG12341 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11965641	3L_11965641_SNP [dm3] 3L_11972541_SNP [dm6]	T	A	2.958e^-4	0.914	NON_SYNONYMOUS_CODING Muc68E DOWNSTREAM CG42397	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3595364	3L_3595364_SNP [dm3] 3L_3595364_SNP [dm6]	A	G	2.961e^-4	0.914	INTRON Eip63E
3L	2344772	3L_2344772_SNP [dm3] 3L_2344772_SNP [dm6]	G	A	2.984e^-4	0.914	UTR_3_PRIME MsR1
X	18627306	X_18627306_SNP [dm3] X_18733273_SNP [dm6]	C	T	3.004e^-4	0.914	EXON CR45513
X	1050820	X_1050820_SNP [dm3] X_1156787_SNP [dm6]	T	A	3.010e^-4	0.914	INTERGENIC
2L	12384148	2L_12384148_SNP [dm3] 2L_12384148_SNP [dm6]	A	C	3.012e^-4	0.914	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20864988	X_20864988_SNP [dm3] X_20993961_SNP [dm6]	G	A	3.013e^-4	0.914	INTERGENIC
3R	14733618	3R_14733618_SNP [dm3] 3R_18907896_SNP [dm6]	T	C	3.014e^-4	0.914	SYNONYMOUS_CODING EndoA	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1965303	2L_1965303_SNP [dm3] 2L_1965303_SNP [dm6]	T	A	3.019e^-4	0.914	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
2L	1965304	2L_1965304_SNP [dm3] 2L_1965304_SNP [dm6]	C	T	3.019e^-4	0.914	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
3R	19736715	3R_19736715_SNP [dm3] 3R_23910993_SNP [dm6]	C	T	3.019e^-4	0.914	INTRON sba
2R	11256263	2R_11256263_SNP [dm3] 2R_15368758_SNP [dm6]	A	G	3.020e^-4	0.914	DOWNSTREAM unc-5 INTRON Pms2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11256522	2R_11256522_SNP [dm3] 2R_15369017_SNP [dm6]	A	T	3.020e^-4	0.914	SYNONYMOUS_CODING Pms2 DOWNSTREAM unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
4	872438	4_872438_SNP [dm3] 4_851812_SNP [dm6]	C	T	3.022e^-4	0.914	DOWNSTREAM CR45123 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	17803258	3L_17803258_SNP [dm3] 3L_17810158_SNP [dm6]	T	C	3.024e^-4	0.914	NON_SYNONYMOUS_CODING cln3
X	15289425	X_15289425_SNP [dm3] X_15395392_SNP [dm6]	C	T	3.035e^-4	0.914	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6557404	X_6557404_DEL [dm3] X_6663371_DEL [dm6]	ACCACGCAAATTTA...	A	3.042e^-4	0.914	INTRON Ctr1A
3L	5985250	3L_5985250_SNP [dm3] 3L_5992150_SNP [dm6]	G	A	3.051e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16527870	X_16527870_SNP [dm3] X_16633837_SNP [dm6]	G	A	3.052e^-4	0.914	DOWNSTREAM CR45001 INTRON Rok
3R	3879214	3R_3879214_SNP [dm3] 3R_8053492_SNP [dm6]	C	G	3.058e^-4	0.914	INTRON CG43060
4	910625	4_910625_SNP [dm3] 4_889999_SNP [dm6]	T	G	3.065e^-4	0.914	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
2L	19851478	2L_19851478_SNP [dm3] 2L_19851478_SNP [dm6]	T	A	3.066e^-4	0.914	INTRON sick
3L	11658847	3L_11658847_SNP [dm3] 3L_11665747_SNP [dm6]	C	A	3.067e^-4	0.914	INTRON CG32085
X	3059679	X_3059679_SNP [dm3] X_3165646_SNP [dm6]	T	C	3.067e^-4	0.914	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3059682	X_3059682_SNP [dm3] X_3165649_SNP [dm6]	C	A	3.067e^-4	0.914	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	3.081e^-4	0.914	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	13898681	3L_13898681_SNP [dm3] 3L_13905581_SNP [dm6]	T	C	3.091e^-4	0.914	INTERGENIC
2L	18549108	2L_18549108_SNP [dm3] 2L_18549108_SNP [dm6]	A	G	3.092e^-4	0.914	INTRON Pde11
3L	14458537	3L_14458537_SNP [dm3] 3L_14465437_SNP [dm6]	G	A	3.099e^-4	0.914	INTRON bbg
3R	24359984	3R_24359984_SNP [dm3] 3R_28534262_SNP [dm6]	T	C	3.099e^-4	0.914	INTRON Ppn
X	9012302	X_9012302_SNP [dm3] X_9118269_SNP [dm6]	T	C	3.100e^-4	0.914	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18964646	X_18964646_SNP [dm3] X_19070613_SNP [dm6]	T	A	3.103e^-4	0.914	INTERGENIC
X	9724669	X_9724669_SNP [dm3] X_9830636_SNP [dm6]	C	A	3.103e^-4	0.914	INTRON CG32698
3L	1365432	3L_1365432_SNP [dm3] 3L_1365432_SNP [dm6]	A	G	3.104e^-4	0.914	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2L	13893712	2L_13893712_DEL [dm3] 2L_13893712_DEL [dm6]	TAAAGTTT	T	3.106e^-4	0.914	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	6769810	2L_6769810_SNP [dm3] 2L_6769810_SNP [dm6]	C	T	3.118e^-4	0.915	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3814694	2L_3814694_SNP [dm3] 2L_3814694_SNP [dm6]	A	T	3.121e^-4	0.915	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3922988	3L_3922988_INS [dm3] 3L_3922988_INS [dm6]	A	AAAATTGTATTCAACTGA...	3.122e^-4	0.915	INTRON Eip63F-1
X	9175742	X_9175742_SNP [dm3] X_9281709_SNP [dm6]	G	A	3.137e^-4	0.916	INTRON c11.1	TF binding site BDTNP1_TFBS_dl
X	5760533	X_5760533_SNP [dm3] X_5866500_SNP [dm6]	C	T	3.142e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3814305	2L_3814305_SNP [dm3] 2L_3814305_SNP [dm6]	T	A	3.144e^-4	0.916	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	8361425	X_8361425_SNP [dm3] X_8467392_SNP [dm6]	C	T	3.144e^-4	0.916	DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
3L	500935	3L_500935_SNP [dm3] 3L_500935_SNP [dm6]	C	T	3.161e^-4	0.916	UPSTREAM CG34268 & 1 other INTRON klar
3R	10657484	3R_10657484_SNP [dm3] 3R_14831762_SNP [dm6]	G	C	3.162e^-4	0.916	INTRON btsz
2R	14715337	2R_14715337_SNP [dm3] 2R_18827832_SNP [dm6]	T	A	3.175e^-4	0.916	INTRON CG15097
2R	11265027	2R_11265027_SNP [dm3] 2R_15377522_SNP [dm6]	C	T	3.176e^-4	0.916	NON_SYNONYMOUS_CODING dup	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11266399	2R_11266399_SNP [dm3] 2R_15378894_SNP [dm6]	G	T	3.178e^-4	0.916	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24537908	3R_24537908_SNP [dm3] 3R_28712186_SNP [dm6]	T	A	3.185e^-4	0.916	INTRON htt
X	17257598	X_17257598_SNP [dm3] X_17363565_SNP [dm6]	C	G	3.190e^-4	0.916	INTERGENIC
X	5047145	X_5047145_SNP [dm3] X_5153112_SNP [dm6]	G	A	3.196e^-4	0.916	INTRON rg & 1 other
X	9738614	X_9738614_SNP [dm3] X_9844581_SNP [dm6]	A	T	3.198e^-4	0.916	INTRON CG32698
2L	20074753	2L_20074753_SNP [dm3] 2L_20074753_SNP [dm6]	G	A	3.200e^-4	0.916	INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3437300	3L_3437300_SNP [dm3] 3L_3437300_SNP [dm6]	A	T	3.201e^-4	0.916	INTRON eIF5B
3R	24360396	3R_24360396_SNP [dm3] 3R_28534674_SNP [dm6]	A	T	3.228e^-4	0.92	INTRON Ppn
2R	9031184	2R_9031184_SNP [dm3] 2R_13143679_SNP [dm6]	A	T	3.237e^-4	0.92	NON_SYNONYMOUS_CODING Ack-like DOWNSTREAM Cap-G	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17793399	3R_17793399_SNP [dm3] 3R_21967677_SNP [dm6]	A	G	3.238e^-4	0.92	INTRON Eip93F
3R	4407780	3R_4407780_SNP [dm3] 3R_8582058_SNP [dm6]	T	G	3.239e^-4	0.92	INTRON 5-HT2B
3R	6115875	3R_6115875_SNP [dm3] 3R_10290153_SNP [dm6]	T	C	3.248e^-4	0.92	UPSTREAM CG43143 INTRON CG43143
4	1061297	4_1061297_INS [dm3] 4_1040671_INS [dm6]	C	CTCTTCTATCTGTCTAACTG...	3.254e^-4	0.92	INTRON CaMKII
3R	16293207	3R_16293207_SNP [dm3] 3R_20467485_SNP [dm6]	C	T	3.265e^-4	0.92	INTRON Gfrl
2L	19742406	2L_19742406_SNP [dm3] 2L_19742406_SNP [dm6]	T	C	3.268e^-4	0.92	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
2L	13046650	2L_13046650_SNP [dm3] 2L_13046650_SNP [dm6]	A	C	3.276e^-4	0.92	INTRON CG9932
3L	3885927	3L_3885927_SNP [dm3] 3L_3885927_SNP [dm6]	G	T	3.279e^-4	0.92	INTERGENIC
X	19759872	X_19759872_SNP [dm3] X_19865839_SNP [dm6]	G	A	3.281e^-4	0.92	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
4	917786	4_917786_SNP [dm3] 4_897160_SNP [dm6]	T	C	3.292e^-4	0.92	INTRON unc-13
X	5707182	X_5707182_SNP [dm3] X_5813149_SNP [dm6]	C	T	3.294e^-4	0.92	UPSTREAM CG44329 INTERGENIC
3R	8069761	3R_8069761_SNP [dm3] 3R_12244039_SNP [dm6]	A	T	3.296e^-4	0.92	UPSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	17452161	X_17452161_SNP [dm3] X_17558128_SNP [dm6]	T	C	3.302e^-4	0.92	INTRON CG43658
X	16423354	X_16423354_SNP [dm3] X_16529321_SNP [dm6]	T	C	3.306e^-4	0.92	INTRON para
4	1061288	4_1061288_DEL [dm3] 4_1040662_DEL [dm6]	GCATCAAA	G	3.311e^-4	0.92	INTRON CaMKII
3R	13761783	3R_13761783_SNP [dm3] 3R_17936061_SNP [dm6]	T	A	3.318e^-4	0.92	INTRON cpo
3R	1421156	3R_1421156_SNP [dm3] 3R_5595434_SNP [dm6]	C	A	3.318e^-4	0.92	UTR_3_PRIME kra DOWNSTREAM Vha26 & 3 others	TF binding site BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21600208	3L_21600208_SNP [dm3] 3L_21607108_SNP [dm6]	T	G	3.321e^-4	0.92	INTRON TfAP-2
X	15267429	X_15267429_SNP [dm3] X_15373396_SNP [dm6]	T	A	3.326e^-4	0.92	INTRON acj6	TF binding site BDTNP1_TFBS_dl
2L	13893638	2L_13893638_SNP [dm3] 2L_13893638_SNP [dm6]	T	A	3.326e^-4	0.92	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
4	1096674	4_1096674_SNP [dm3] 4_1076048_SNP [dm6]	C	T	3.329e^-4	0.92	SYNONYMOUS_CODING Rfabg	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
4	942253	4_942253_DEL [dm3] 4_921627_DEL [dm6]	TT	T	3.335e^-4	0.92	INTRON eIF4G	transposable element FlyBase
X	18910557	X_18910557_SNP [dm3] X_19016524_SNP [dm6]	T	C	3.339e^-4	0.92	INTRON CG43759
2L	14084037	2L_14084037_INS [dm3] 2L_14084037_INS [dm6]	A	AA	3.342e^-4	0.92	INTRON nAChRalpha5
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	3.354e^-4	0.922	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3L	12586028	3L_12586028_SNP [dm3] 3L_12592928_SNP [dm6]	A	G	3.364e^-4	0.923	INTRON ara	TF binding site mE1_TFBS_HSA
3R	21409061	3R_21409061_SNP [dm3] 3R_25583339_SNP [dm6]	A	G	3.367e^-4	0.923	UPSTREAM CG4582 INTRON msi
X	9184335	X_9184335_SNP [dm3] X_9290302_SNP [dm6]	C	A	3.373e^-4	0.923	INTRON lz	TF binding site mE1_TFBS_Kr
X	21904991	X_21904991_SNP [dm3] X_22503155_SNP [dm6]	T	A	3.377e^-4	0.923	INTRON l_1_G0196
3L	16936766	3L_16936766_SNP [dm3] 3L_16943666_SNP [dm6]	A	T	3.404e^-4	0.923	UPSTREAM Cpr73D & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13954460	2L_13954460_SNP [dm3] 2L_13954460_SNP [dm6]	G	A	3.407e^-4	0.923	INTRON Ance-3
2R	11285594	2R_11285594_SNP [dm3] 2R_15398089_SNP [dm6]	G	A	3.413e^-4	0.923	INTERGENIC
3R	11699713	3R_11699713_SNP [dm3] 3R_15873991_SNP [dm6]	C	G	3.416e^-4	0.923	INTRON CG31183
4	1110655	4_1110655_SNP [dm3] 4_1090029_SNP [dm6]	C	T	3.419e^-4	0.923	INTRON sv	transposable element FlyBase
4	1157592	4_1157592_SNP [dm3] 4_1136966_SNP [dm6]	G	A	3.422e^-4	0.923	UTR_3_PRIME CG11155 DOWNSTREAM CG32017
4	1175445	4_1175445_SNP [dm3] 4_1154819_SNP [dm6]	T	C	3.425e^-4	0.923	INTRON CG32017 & 1 other	transposable element FlyBase
X	19875191	X_19875191_SNP [dm3] X_19981158_SNP [dm6]	T	A	3.425e^-4	0.923	INTERGENIC
4	981237	4_981237_SNP [dm3] 4_960611_SNP [dm6]	C	T	3.426e^-4	0.923	INTRON CR44030	TF binding site mE1_TFBS_cad transposable element FlyBase
4	1059573	4_1059573_SNP [dm3] 4_1038947_SNP [dm6]	T	G	3.438e^-4	0.923	INTRON CaMKII	transposable element FlyBase
2R	10021890	2R_10021890_SNP [dm3] 2R_14134385_SNP [dm6]	A	C	3.439e^-4	0.923	INTRON Prosap
3R	22003648	3R_22003648_SNP [dm3] 3R_26177926_SNP [dm6]	G	A	3.447e^-4	0.923	INTRON CG31323
3L	13880196	3L_13880196_SNP [dm3] 3L_13887096_SNP [dm6]	T	G	3.452e^-4	0.923	INTRON dysc	TF binding site mE1_TFBS_cad
X	2311541	X_2311541_INS [dm3] X_2417508_INS [dm6]	CC	AGTGTGGAGTGGATG...	3.456e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_sens
2L	11183159	2L_11183159_SNP [dm3] 2L_11183159_SNP [dm6]	G	C	3.459e^-4	0.923	INTRON Ca-beta
3R	6885840	3R_6885840_SNP [dm3] 3R_11060118_SNP [dm6]	C	G	3.476e^-4	0.923	INTERGENIC
2L	1287777	2L_1287777_SNP [dm3] 2L_1287777_SNP [dm6]	G	T	3.477e^-4	0.923	INTRON robo3
3L	9780730	3L_9780730_SNP [dm3] 3L_9787630_SNP [dm6]	G	A	3.479e^-4	0.923	DOWNSTREAM Zasp67 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4614050	3L_4614050_SNP [dm3] 3L_4614050_SNP [dm6]	C	T	3.479e^-4	0.923	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	17736545	3L_17736545_SNP [dm3] 3L_17743445_SNP [dm6]	C	A	3.484e^-4	0.923	DOWNSTREAM CG7460 INTRON Ccn
2L	19650663	2L_19650663_SNP [dm3] 2L_19650663_SNP [dm6]	G	C	3.489e^-4	0.923	INTRON Lar
3L	2268043	3L_2268043_SNP [dm3] 3L_2268043_SNP [dm6]	C	T	3.491e^-4	0.923	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
X	20229111	X_20229111_SNP [dm3] X_20358084_SNP [dm6]	G	C	3.502e^-4	0.923	INTERGENIC
3R	9557195	3R_9557195_SNP [dm3] 3R_13731473_SNP [dm6]	A	T	3.512e^-4	0.923	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19429595	2L_19429595_SNP [dm3] 2L_19429595_SNP [dm6]	T	C	3.514e^-4	0.923	NON_SYNONYMOUS_CODING CG13085 DOWNSTREAM CG16771	TF binding site mE1_TFBS_chinmo
3L	3943045	3L_3943045_SNP [dm3] 3L_3943045_SNP [dm6]	A	G	3.516e^-4	0.923	UTR_5_PRIME CG14982 UPSTREAM CG10863
3R	9177951	3R_9177951_SNP [dm3] 3R_13352229_SNP [dm6]	A	G	3.517e^-4	0.923	INTERGENIC
3L	3287676	3L_3287676_SNP [dm3] 3L_3287676_SNP [dm6]	C	T	3.520e^-4	0.923	INTRON CG12017	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16013511	3L_16013511_SNP [dm3] 3L_16020411_SNP [dm6]	G	C	3.527e^-4	0.923	EXON CR43949	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7359645	2L_7359645_SNP [dm3] 2L_7359645_SNP [dm6]	C	G	3.547e^-4	0.923	INTERGENIC
2L	5978320	2L_5978320_SNP [dm3] 2L_5978320_SNP [dm6]	G	A	3.553e^-4	0.923	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2397248	3L_2397248_SNP [dm3] 3L_2397248_SNP [dm6]	C	T	3.563e^-4	0.923	INTRON CG45186
2L	7170397	2L_7170397_SNP [dm3] 2L_7170397_SNP [dm6]	A	G	3.567e^-4	0.923	INTERGENIC
3R	11695541	3R_11695541_SNP [dm3] 3R_15869819_SNP [dm6]	C	T	3.573e^-4	0.923	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9989709	3L_9989709_SNP [dm3] 3L_9996609_SNP [dm6]	T	G	3.577e^-4	0.923	INTRON dpr6
X	14028063	X_14028063_SNP [dm3] X_14134030_SNP [dm6]	T	G	3.578e^-4	0.923	INTERGENIC
2L	3345098	2L_3345098_SNP [dm3] 2L_3345098_SNP [dm6]	G	A	3.596e^-4	0.923	INTRON E23
2R	4963547	2R_4963547_SNP [dm3] 2R_9076042_SNP [dm6]	C	G	3.599e^-4	0.923	INTRON ana	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	19705274	X_19705274_DEL [dm3] X_19811241_DEL [dm6]	CGCAAC	C	3.600e^-4	0.923	INTERGENIC
3L	14356819	3L_14356819_SNP [dm3] 3L_14363719_SNP [dm6]	C	A	3.604e^-4	0.923	INTRON fz
X	19182053	X_19182053_SNP [dm3] X_19288020_SNP [dm6]	A	G	3.618e^-4	0.923	INTRON CG8034	TF binding site mE1_TFBS_HSA
3R	21185195	3R_21185195_SNP [dm3] 3R_25359473_SNP [dm6]	C	T	3.624e^-4	0.923	SYNONYMOUS_CODING CG11913 INTRON Fur1	TF binding site mE1_TFBS_sens
3L	883018	3L_883018_INS [dm3] 3L_883018_INS [dm6]	G	GTTC	3.626e^-4	0.923	INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18528352	2R_18528352_SNP [dm3] 2R_22640847_SNP [dm6]	G	A	3.631e^-4	0.923	SYNONYMOUS_CODING RpS24 UPSTREAM CG3732 DOWNSTREAM Ugt58Fa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
4	897473	4_897473_SNP [dm3] 4_876847_SNP [dm6]	A	T	3.634e^-4	0.923	INTRON unc-13
X	12390238	X_12390238_SNP [dm3] X_12496205_SNP [dm6]	T	C	3.635e^-4	0.923	SYNONYMOUS_CODING Mks1 UPSTREAM CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1050687	X_1050687_SNP [dm3] X_1156654_SNP [dm6]	G	A	3.641e^-4	0.923	INTERGENIC
3R	16613212	3R_16613212_DEL [dm3] 3R_20787490_DEL [dm6]	CTTGGGATGAATTTGTTTAA...	C	3.644e^-4	0.923	INTRON Syp
2L	19426013	2L_19426013_SNP [dm3] 2L_19426013_SNP [dm6]	C	G	3.646e^-4	0.923	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	1171370	3R_1171370_SNP [dm3] 3R_5345648_SNP [dm6]	G	T	3.647e^-4	0.923	INTRON mtd
2L	18421556	2L_18421556_SNP [dm3] 2L_18421556_SNP [dm6]	T	G	3.649e^-4	0.923	INTERGENIC
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	3.661e^-4	0.923	INTERGENIC
3L	16417024	3L_16417024_SNP [dm3] 3L_16423924_SNP [dm6]	G	A	3.664e^-4	0.923	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2268061	3L_2268061_SNP [dm3] 3L_2268061_SNP [dm6]	A	G	3.664e^-4	0.923	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
2L	19742240	2L_19742240_SNP [dm3] 2L_19742240_SNP [dm6]	A	C	3.666e^-4	0.923	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
X	17454578	X_17454578_SNP [dm3] X_17560545_SNP [dm6]	A	T	3.667e^-4	0.923	INTRON CG43658
3R	6547238	3R_6547238_SNP [dm3] 3R_10721516_SNP [dm6]	A	G	3.673e^-4	0.923	INTERGENIC
X	10262932	X_10262932_SNP [dm3] X_10368899_SNP [dm6]	T	G	3.681e^-4	0.923	INTRON CG17841	TF binding site mE1_TFBS_HSA
3R	25676357	3R_25676357_SNP [dm3] 3R_29850635_SNP [dm6]	C	T	3.685e^-4	0.923	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	17451746	X_17451746_SNP [dm3] X_17557713_SNP [dm6]	G	A	3.690e^-4	0.923	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	19650664	2L_19650664_SNP [dm3] 2L_19650664_SNP [dm6]	A	C	3.691e^-4	0.923	INTRON Lar
2R	12369049	2R_12369049_SNP [dm3] 2R_16481544_SNP [dm6]	C	T	3.694e^-4	0.923	INTERGENIC
X	12027348	X_12027348_SNP [dm3] X_12133315_SNP [dm6]	T	C	3.694e^-4	0.923	INTRON Ten-a
3L	12508494	3L_12508494_SNP [dm3] 3L_12515394_SNP [dm6]	T	A	3.702e^-4	0.923	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	19742408	2L_19742408_INS [dm3] 2L_19742408_INS [dm6]	A	TTACTGTTCAAAACACCAG...	3.713e^-4	0.923	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
3L	6379158	3L_6379158_SNP [dm3] 3L_6386058_SNP [dm6]	A	G	3.717e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10475928	2R_10475928_SNP [dm3] 2R_14588423_SNP [dm6]	C	T	3.720e^-4	0.923	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18537582	2R_18537582_SNP [dm3] 2R_22650077_SNP [dm6]	T	G	3.727e^-4	0.923	UPSTREAM nsr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11747036	2R_11747036_SNP [dm3] 2R_15859531_SNP [dm6]	G	A	3.733e^-4	0.923	SYNONYMOUS_CODING Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25378258	3R_25378258_SNP [dm3] 3R_29552536_SNP [dm6]	A	G	3.739e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
4	1071908	4_1071908_SNP [dm3] 4_1051282_SNP [dm6]	G	A	3.750e^-4	0.923	UTR_5_PRIME CaMKII INTRON CaMKII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	17040663	3R_17040663_SNP [dm3] 3R_21214941_SNP [dm6]	C	T	3.754e^-4	0.923	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	5617607	X_5617607_SNP [dm3] X_5723574_SNP [dm6]	C	A	3.756e^-4	0.923	UPSTREAM CG32758 INTRON CG32758
X	3319804	X_3319804_SNP [dm3] X_3425771_SNP [dm6]	C	G	3.779e^-4	0.923	INTRON CR44999 & 1 other
3R	24616238	3R_24616238_SNP [dm3] 3R_28790516_SNP [dm6]	G	A	3.784e^-4	0.923	UPSTREAM intr DOWNSTREAM CG34295 INTERGENIC
X	9012786	X_9012786_SNP [dm3] X_9118753_SNP [dm6]	T	C	3.790e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9148539	2R_9148539_SNP [dm3] 2R_13261034_SNP [dm6]	A	G	3.795e^-4	0.923	INTRON CG42319
X	6214872	X_6214872_SNP [dm3] X_6320839_SNP [dm6]	A	C	3.798e^-4	0.923	SYNONYMOUS_CODING CG15894
3R	24571891	3R_24571891_SNP [dm3] 3R_28746169_SNP [dm6]	A	G	3.801e^-4	0.923	INTERGENIC
2L	19597488	2L_19597488_SNP [dm3] 2L_19597488_SNP [dm6]	C	T	3.802e^-4	0.923	INTRON Lar
3R	25973138	3R_25973138_SNP [dm3] 3R_30147416_SNP [dm6]	C	T	3.811e^-4	0.923	INTRON AdoR
X	13795318	X_13795318_SNP [dm3] X_13901285_SNP [dm6]	G	A	3.814e^-4	0.923	INTRON mamo
X	5960684	X_5960684_DEL [dm3] X_6066651_DEL [dm6]	TTGT	T	3.816e^-4	0.923	UPSTREAM CG43115 INTERGENIC
2L	915014	2L_915014_SNP [dm3] 2L_915014_SNP [dm6]	G	T	3.821e^-4	0.923	INTRON GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4965565	2R_4965565_SNP [dm3] 2R_9078060_SNP [dm6]	C	T	3.821e^-4	0.923	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	10970044	2R_10970044_SNP [dm3] 2R_15082539_SNP [dm6]	A	G	3.823e^-4	0.923	INTERGENIC
4	1016070	4_1016070_SNP [dm3] 4_995444_SNP [dm6]	C	A	3.826e^-4	0.923	INTRON toy	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	22084645	2L_22084645_SNP [dm3] 2L_22084645_SNP [dm6]	T	C	3.828e^-4	0.923	INTERGENIC
3R	19437576	3R_19437576_SNP [dm3] 3R_23611854_SNP [dm6]	T	G	3.832e^-4	0.923	INTRON CG31145
2R	13705978	2R_13705978_SNP [dm3] 2R_17818473_SNP [dm6]	A	G	3.836e^-4	0.923	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20312938	2L_20312938_SNP [dm3] 2L_20312938_SNP [dm6]	T	C	3.837e^-4	0.923	INTRON spir
2L	17551010	2L_17551010_SNP [dm3] 2L_17551010_SNP [dm6]	T	A	3.838e^-4	0.923	INTERGENIC
3L	10275203	3L_10275203_SNP [dm3] 3L_10282103_SNP [dm6]	A	T	3.839e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10624067	3L_10624067_SNP [dm3] 3L_10630967_SNP [dm6]	G	A	3.849e^-4	0.923	UPSTREAM CG42536 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	17809954	3L_17809954_SNP [dm3] 3L_17816854_SNP [dm6]	A	C	3.865e^-4	0.923	SYNONYMOUS_CODING Ir75a
2R	16445839	2R_16445839_SNP [dm3] 2R_20558334_SNP [dm6]	C	T	3.870e^-4	0.923	DOWNSTREAM Mgat1 INTRON lms	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5304804	X_5304804_SNP [dm3] X_5410771_SNP [dm6]	A	T	3.871e^-4	0.923	UTR_5_PRIME NAAT1
4	1217288	4_1217288_SNP [dm3] 4_1196662_SNP [dm6]	A	G	3.876e^-4	0.923	INTRON PIP4K
4	998706	4_998706_SNP [dm3] 4_978080_SNP [dm6]	A	G	3.876e^-4	0.923	DOWNSTREAM sphinx INTRON fuss	TF binding site BDTNP1_TFBS_dl
2R	18220248	2R_18220248_SNP [dm3] 2R_22332743_SNP [dm6]	T	G	3.878e^-4	0.923	UTR_3_PRIME pgc UPSTREAM T3dh & 1 other DOWNSTREAM Liprin-gamma
3R	26634571	3R_26634571_SNP [dm3] 3R_30808849_SNP [dm6]	C	A	3.885e^-4	0.923	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3R	14116945	3R_14116945_SNP [dm3] 3R_18291223_SNP [dm6]	C	T	3.886e^-4	0.923	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11144595	2R_11144595_SNP [dm3] 2R_15257090_SNP [dm6]	G	T	3.892e^-4	0.923	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8361416	X_8361416_SNP [dm3] X_8467383_SNP [dm6]	G	A	3.893e^-4	0.923	DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
X	4902155	X_4902155_SNP [dm3] X_5008122_SNP [dm6]	G	A	3.903e^-4	0.923	INTRON CR44833
2L	5020256	2L_5020256_SNP [dm3] 2L_5020256_SNP [dm6]	A	G	3.922e^-4	0.923	INTRON vkg	TF binding site BDTNP1_TFBS_twi
2L	1091326	2L_1091326_SNP [dm3] 2L_1091326_SNP [dm6]	A	G	3.923e^-4	0.923	INTRON CG4629
3L	10616333	3L_10616333_SNP [dm3] 3L_10623233_SNP [dm6]	C	A	3.926e^-4	0.923	NON_SYNONYMOUS_CODING CG42521
2L	3537207	2L_3537207_SNP [dm3] 2L_3537207_SNP [dm6]	C	T	3.929e^-4	0.923	UPSTREAM CR44308 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21697056	3R_21697056_INS [dm3] 3R_25871334_INS [dm6]	A	AA	3.930e^-4	0.923	UTR_3_PRIME CG5890
3L	8748267	3L_8748267_SNP [dm3] 3L_8755167_SNP [dm6]	C	T	3.945e^-4	0.923	UPSTREAM CG6576 INTRON Fhos
2L	19072369	2L_19072369_SNP [dm3] 2L_19072369_SNP [dm6]	G	T	3.945e^-4	0.923	INTRON CG17572
3R	16910640	3R_16910640_INS [dm3] 3R_21084918_INS [dm6]	A	AA	3.948e^-4	0.923	INTRON RhoGAP93B
3R	16910645	3R_16910645_DEL [dm3] 3R_21084923_DEL [dm6]	AAA	A	3.948e^-4	0.923	INTRON RhoGAP93B
3R	16910657	3R_16910657_INS [dm3] 3R_21084935_INS [dm6]	C	CTT	3.948e^-4	0.923	INTRON RhoGAP93B
3L	4736089	3L_4736089_SNP [dm3] 3L_4736089_SNP [dm6]	T	C	3.952e^-4	0.923	INTRON RhoGEF64C
3L	17811790	3L_17811790_SNP [dm3] 3L_17818690_SNP [dm6]	T	C	3.953e^-4	0.923	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
X	13772067	X_13772067_SNP [dm3] X_13878034_SNP [dm6]	A	G	3.977e^-4	0.925	INTRON mamo
2L	4035451	2L_4035451_SNP [dm3] 2L_4035451_SNP [dm6]	A	T	3.980e^-4	0.925	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	19329813	3R_19329813_SNP [dm3] 3R_23504091_SNP [dm6]	A	G	3.982e^-4	0.925	INTERGENIC
X	16421108	X_16421108_DEL [dm3] X_16527075_DEL [dm6]	TC	T	3.982e^-4	0.925	INTRON para	TF binding site BDTNP1_TFBS_dl
3L	3316377	3L_3316377_SNP [dm3] 3L_3316377_SNP [dm6]	A	T	3.998e^-4	0.926	UPSTREAM Drsl5 DOWNSTREAM Drsl4 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10677871	2R_10677871_SNP [dm3] 2R_14790366_SNP [dm6]	T	C	3.998e^-4	0.926	INTRON kn	TF binding site BDTNP1_TFBS_dl
3R	21409034	3R_21409034_SNP [dm3] 3R_25583312_SNP [dm6]	T	C	4.000e^-4	0.926	UPSTREAM CG4582 INTRON msi
X	17452076	X_17452076_SNP [dm3] X_17558043_SNP [dm6]	C	T	4.019e^-4	0.926	INTRON CG43658
X	18910162	X_18910162_DEL [dm3] X_19016129_DEL [dm6]	TT	T	4.019e^-4	0.926	INTRON CG43759
3R	6001975	3R_6001975_SNP [dm3] 3R_10176253_SNP [dm6]	C	A	4.021e^-4	0.926	INTRON CG12814
X	5617584	X_5617584_SNP [dm3] X_5723551_SNP [dm6]	A	G	4.030e^-4	0.926	UTR_5_PRIME CG32758 INTRON CG32758
3R	13847884	3R_13847884_SNP [dm3] 3R_18022162_SNP [dm6]	C	T	4.039e^-4	0.926	SYNONYMOUS_CODING CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5488942	3L_5488942_SNP [dm3] 3L_5495842_SNP [dm6]	G	C	4.044e^-4	0.926	INTERGENIC
3L	9339629	3L_9339629_SNP [dm3] 3L_9346529_SNP [dm6]	T	G	4.044e^-4	0.926	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	13898184	3L_13898184_SNP [dm3] 3L_13905084_SNP [dm6]	C	T	4.046e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	956580	4_956580_SNP [dm3] 4_935954_SNP [dm6]	C	T	4.046e^-4	0.926	UPSTREAM mGluR INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17604967	X_17604967_SNP [dm3] X_17710934_SNP [dm6]	A	G	4.051e^-4	0.926	UTR_5_PRIME CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7563017	2R_7563017_SNP [dm3] 2R_11675512_SNP [dm6]	G	A	4.059e^-4	0.926	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7408942	3R_7408942_DEL [dm3] 3R_11583220_DEL [dm6]	TAT	T	4.070e^-4	0.926	UTR_5_PRIME wkd INTRON wkd	TF binding site mE1_TFBS_chinmo
4	715227	4_715227_SNP [dm3] 4_694601_SNP [dm6]	T	C	4.079e^-4	0.926	INTRON myo	TF binding site BDTNP1_TFBS_dl
2L	4897343	2L_4897343_SNP [dm3] 2L_4897343_SNP [dm6]	A	G	4.080e^-4	0.926	INTRON CG3036
3R	23614154	3R_23614154_SNP [dm3] 3R_27788432_SNP [dm6]	C	A	4.095e^-4	0.926	INTRON CG34353	TF binding site mE1_TFBS_chinmo
4	926243	4_926243_DEL [dm3] 4_905617_DEL [dm6]	ATAAGCAATAAATAGTGCAG...	A	4.095e^-4	0.926	UTR_5_PRIME unc-13 UPSTREAM unc-13 INTRON CR43361	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	9889325	2R_9889325_SNP [dm3] 2R_14001820_SNP [dm6]	A	G	4.103e^-4	0.926	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16941641	3R_16941641_SNP [dm3] 3R_21115919_SNP [dm6]	C	A	4.118e^-4	0.926	UTR_3_PRIME Rab11 UPSTREAM ppan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8693902	3L_8693902_SNP [dm3] 3L_8700802_SNP [dm6]	T	C	4.129e^-4	0.926	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	9071198	2L_9071198_SNP [dm3] 2L_9071198_SNP [dm6]	G	C	4.133e^-4	0.926	UPSTREAM CG31708 EXON CR44483
2R	17665146	2R_17665146_SNP [dm3] 2R_21777641_SNP [dm6]	C	A	4.136e^-4	0.926	INTERGENIC
4	944247	4_944247_SNP [dm3] 4_923621_SNP [dm6]	G	A	4.137e^-4	0.926	INTRON eIF4G
2L	3335846	2L_3335846_SNP [dm3] 2L_3335846_SNP [dm6]	G	A	4.142e^-4	0.926	SYNONYMOUS_CODING E23
3L	2830457	3L_2830457_SNP [dm3] 3L_2830457_SNP [dm6]	C	T	4.143e^-4	0.926	INTRON CG43444
3R	20393568	3R_20393568_SNP [dm3] 3R_24567846_SNP [dm6]	A	G	4.149e^-4	0.926	INTRON CG13624
3L	1457450	3L_1457450_SNP [dm3] 3L_1457450_SNP [dm6]	A	C	4.152e^-4	0.926	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19760114	X_19760114_SNP [dm3] X_19866081_SNP [dm6]	A	T	4.175e^-4	0.926	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11655649	3L_11655649_SNP [dm3] 3L_11662549_SNP [dm6]	T	G	4.198e^-4	0.926	INTRON CG32085
2R	13839112	2R_13839112_SNP [dm3] 2R_17951607_SNP [dm6]	T	C	4.201e^-4	0.926	INTERGENIC
X	21904997	X_21904997_SNP [dm3] X_22503161_SNP [dm6]	C	T	4.207e^-4	0.926	INTRON l_1_G0196
3L	10360955	3L_10360955_SNP [dm3] 3L_10367855_SNP [dm6]	T	C	4.248e^-4	0.926	DOWNSTREAM CR44327 INTERGENIC
3L	15196520	3L_15196520_INS [dm3] 3L_15203420_INS [dm6]	C	CAAATC	4.252e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2L	2842937	2L_2842937_SNP [dm3] 2L_2842937_SNP [dm6]	A	G	4.255e^-4	0.926	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2R	13502393	2R_13502393_SNP [dm3] 2R_17614888_SNP [dm6]	G	A	4.256e^-4	0.926	INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19688926	2L_19688926_DEL [dm3] 2L_19688926_DEL [dm6]	AA	G	4.267e^-4	0.926	INTRON Lar	TF binding site BDTNP1_TFBS_twi
2R	16064286	2R_16064286_SNP [dm3] 2R_20176781_SNP [dm6]	A	T	4.271e^-4	0.926	INTERGENIC
3R	17206082	3R_17206082_SNP [dm3] 3R_21380360_SNP [dm6]	C	G	4.273e^-4	0.926	NON_SYNONYMOUS_CODING tin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10226728	X_10226728_SNP [dm3] X_10332695_SNP [dm6]	A	T	4.274e^-4	0.926	UPSTREAM CG15306 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2290188	3L_2290188_SNP [dm3] 3L_2290188_SNP [dm6]	T	C	4.289e^-4	0.926	INTRON MsR2
2R	17664330	2R_17664330_SNP [dm3] 2R_21776825_SNP [dm6]	A	G	4.290e^-4	0.926	INTERGENIC
2L	12172783	2L_12172783_SNP [dm3] 2L_12172783_SNP [dm6]	C	A	4.291e^-4	0.926	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3810648	2L_3810648_SNP [dm3] 2L_3810648_SNP [dm6]	G	C	4.293e^-4	0.926	UTR_3_PRIME Reph DOWNSTREAM CG3407
3R	10161739	3R_10161739_SNP [dm3] 3R_14336017_SNP [dm6]	T	A	4.299e^-4	0.926	INTRON NK7.1
X	5924976	X_5924976_DEL [dm3] X_6030943_DEL [dm6]	CCC	C	4.304e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	5162928	2L_5162928_SNP [dm3] 2L_5162928_SNP [dm6]	G	A	4.305e^-4	0.926	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	6746951	2R_6746951_SNP [dm3] 2R_10859446_SNP [dm6]	T	C	4.306e^-4	0.926	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	17451747	X_17451747_SNP [dm3] X_17557714_SNP [dm6]	A	C	4.307e^-4	0.926	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	17451752	X_17451752_INS [dm3] X_17557719_INS [dm6]	A	AAAAAGGAA	4.307e^-4	0.926	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	16420892	X_16420892_SNP [dm3] X_16526859_SNP [dm6]	G	A	4.307e^-4	0.926	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
4	736687	4_736687_SNP [dm3] 4_716061_SNP [dm6]	A	T	4.319e^-4	0.926	INTRON ey
2R	7435852	2R_7435852_SNP [dm3] 2R_11548347_SNP [dm6]	T	A	4.323e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3922998	3L_3922998_SNP [dm3] 3L_3922998_SNP [dm6]	C	T	4.326e^-4	0.926	INTRON Eip63F-1
3L	12504308	3L_12504308_SNP [dm3] 3L_12511208_SNP [dm6]	A	C	4.351e^-4	0.926	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21189053	3R_21189053_SNP [dm3] 3R_25363331_SNP [dm6]	G	T	4.352e^-4	0.926	INTRON Fur1
2R	12461677	2R_12461677_SNP [dm3] 2R_16574172_SNP [dm6]	G	A	4.353e^-4	0.926	DOWNSTREAM CG8317 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
4	927220	4_927220_SNP [dm3] 4_906594_SNP [dm6]	G	A	4.357e^-4	0.926	UTR_5_PRIME unc-13 UPSTREAM CR43361 INTRON CR43361	transposable element FlyBase
2R	14085392	2R_14085392_SNP [dm3] 2R_18197887_SNP [dm6]	C	G	4.361e^-4	0.926	INTERGENIC
2R	11999688	2R_11999688_SNP [dm3] 2R_16112183_SNP [dm6]	G	T	4.374e^-4	0.926	INTRON Asph
X	17452101	X_17452101_SNP [dm3] X_17558068_SNP [dm6]	A	G	4.380e^-4	0.926	INTRON CG43658
3R	14458350	3R_14458350_SNP [dm3] 3R_18632628_SNP [dm6]	A	C	4.390e^-4	0.926	INTRON qin & 1 other
X	16841581	X_16841581_SNP [dm3] X_16947548_SNP [dm6]	G	T	4.395e^-4	0.926	DOWNSTREAM CG13000 INTRON RhoGAP15B
4	982573	4_982573_SNP [dm3] 4_961947_SNP [dm6]	A	G	4.402e^-4	0.926	DOWNSTREAM fuss INTRON CR44030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19760459	X_19760459_SNP [dm3] X_19866426_SNP [dm6]	A	G	4.412e^-4	0.926	UPSTREAM CG15618 INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14731887	2R_14731887_SNP [dm3] 2R_18844382_SNP [dm6]	A	G	4.417e^-4	0.926	NON_SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20238849	X_20238849_SNP [dm3] X_20367822_SNP [dm6]	C	T	4.417e^-4	0.926	INTERGENIC
4	1065020	4_1065020_SNP [dm3] 4_1044394_SNP [dm6]	T	A	4.417e^-4	0.926	INTRON CaMKII
2L	18463192	2L_18463192_SNP [dm3] 2L_18463192_SNP [dm6]	G	A	4.419e^-4	0.926	INTRON let-7-C
2L	4301848	2L_4301848_SNP [dm3] 2L_4301848_SNP [dm6]	C	G	4.427e^-4	0.926	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11550492	3R_11550492_SNP [dm3] 3R_15724770_SNP [dm6]	C	T	4.431e^-4	0.926	INTERGENIC
4	866044	4_866044_SNP [dm3] 4_845418_SNP [dm6]	C	A	4.432e^-4	0.926	UPSTREAM fd102C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	17715368	3L_17715368_SNP [dm3] 3L_17722268_SNP [dm6]	C	T	4.434e^-4	0.926	INTRON Ccn
2R	10672420	2R_10672420_SNP [dm3] 2R_14784915_SNP [dm6]	T	C	4.436e^-4	0.926	INTRON kn
3L	12473709	3L_12473709_SNP [dm3] 3L_12480609_SNP [dm6]	C	A	4.440e^-4	0.926	INTRON CG10663
2L	4896803	2L_4896803_SNP [dm3] 2L_4896803_SNP [dm6]	C	T	4.448e^-4	0.926	INTRON CG3036
2R	13526078	2R_13526078_SNP [dm3] 2R_17638573_SNP [dm6]	T	C	4.454e^-4	0.926	INTRON CG10936	TF binding site mE1_TFBS_cad
3R	3723256	3R_3723256_SNP [dm3] 3R_7897534_SNP [dm6]	C	A	4.457e^-4	0.926	INTRON mRpS9 & 1 other
2L	1362245	2L_1362245_SNP [dm3] 2L_1362245_SNP [dm6]	T	C	4.459e^-4	0.926	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20372104	2L_20372104_SNP [dm3] 2L_20372104_SNP [dm6]	G	A	4.461e^-4	0.926	DOWNSTREAM Ugt37a1 INTERGENIC
2L	19962202	2L_19962202_SNP [dm3] 2L_19962202_SNP [dm6]	T	A	4.462e^-4	0.926	NON_SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6860516	3L_6860516_SNP [dm3] 3L_6867416_SNP [dm6]	C	G	4.468e^-4	0.926	UPSTREAM CR45115 INTERGENIC
2R	6074524	2R_6074524_SNP [dm3] 2R_10187019_SNP [dm6]	T	A	4.477e^-4	0.926	INTRON KCNQ
3R	20107326	3R_20107326_SNP [dm3] 3R_24281604_SNP [dm6]	G	A	4.493e^-4	0.926	DOWNSTREAM CG13611 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21397270	3L_21397270_SNP [dm3] 3L_21404170_SNP [dm6]	T	C	4.494e^-4	0.926	INTRON rgn
2R	14715344	2R_14715344_SNP [dm3] 2R_18827839_SNP [dm6]	A	G	4.501e^-4	0.926	INTRON CG15097
X	3319656	X_3319656_SNP [dm3] X_3425623_SNP [dm6]	A	G	4.504e^-4	0.926	INTRON CR44999 & 1 other
2R	5046394	2R_5046394_SNP [dm3] 2R_9158889_SNP [dm6]	T	A	4.508e^-4	0.926	SPLICE_SITE_REGION CG8008 INTRON CG8008
X	18964625	X_18964625_SNP [dm3] X_19070592_SNP [dm6]	A	T	4.511e^-4	0.926	INTERGENIC
2R	12130287	2R_12130287_SNP [dm3] 2R_16242782_SNP [dm6]	C	G	4.517e^-4	0.926	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3L	4631294	3L_4631294_SNP [dm3] 3L_4631294_SNP [dm6]	A	C	4.524e^-4	0.926	INTRON axo
2L	17551056	2L_17551056_MNP [dm3] 2L_17551056_MNP [dm6]	TAT	CGG	4.531e^-4	0.926	INTERGENIC
2R	19827265	2R_19827265_SNP [dm3] 2R_23939742_SNP [dm6]	A	G	4.546e^-4	0.926	UTR_5_PRIME CG3735 UPSTREAM Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1782387	2L_1782387_SNP [dm3] 2L_1782387_SNP [dm6]	T	C	4.552e^-4	0.926	INTERGENIC	regulatory region REDfly_CRMs
3L	4599818	3L_4599818_SNP [dm3] 3L_4599818_SNP [dm6]	T	C	4.552e^-4	0.926	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6985619	2L_6985619_SNP [dm3] 2L_6985619_SNP [dm6]	G	A	4.563e^-4	0.926	UPSTREAM CR44326 INTRON uif
X	5047236	X_5047236_SNP [dm3] X_5153203_SNP [dm6]	C	A	4.564e^-4	0.926	INTRON rg & 1 other
X	5928995	X_5928995_SNP [dm3] X_6034962_SNP [dm6]	C	T	4.565e^-4	0.926	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
4	653058	4_653058_SNP [dm3] 4_632432_SNP [dm6]	A	T	4.568e^-4	0.926	INTRON CG1732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA
X	15746822	X_15746822_SNP [dm3] X_15852789_SNP [dm6]	T	C	4.568e^-4	0.926	UPSTREAM CG15914 INTRON UBL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6283407	3L_6283407_DEL [dm3] 3L_6290307_DEL [dm6]	AAAA	A	4.572e^-4	0.926	INTERGENIC
3R	9071847	3R_9071847_SNP [dm3] 3R_13246125_SNP [dm6]	A	G	4.586e^-4	0.926	NON_SYNONYMOUS_CODING Ace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24537910	3R_24537910_SNP [dm3] 3R_28712188_SNP [dm6]	T	C	4.596e^-4	0.926	INTRON htt
2L	7364431	2L_7364431_SNP [dm3] 2L_7364431_SNP [dm6]	A	T	4.596e^-4	0.926	INTRON Wnt10
3R	24673905	3R_24673905_SNP [dm3] 3R_28848183_SNP [dm6]	A	T	4.597e^-4	0.926	INTRON spg
3R	16517123	3R_16517123_SNP [dm3] 3R_20691401_SNP [dm6]	C	A	4.598e^-4	0.926	INTRON Oamb	TF binding site mE1_TFBS_cad
X	19760056	X_19760056_SNP [dm3] X_19866023_SNP [dm6]	C	A	4.607e^-4	0.926	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10398333	3L_10398333_SNP [dm3] 3L_10405233_SNP [dm6]	T	G	4.609e^-4	0.926	INTERGENIC
3L	17702872	3L_17702872_SNP [dm3] 3L_17709772_SNP [dm6]	T	G	4.627e^-4	0.926	INTRON Ccn
2R	13056937	2R_13056937_SNP [dm3] 2R_17169432_SNP [dm6]	C	T	4.630e^-4	0.926	INTERGENIC
2R	1113392	2R_1113392_SNP [dm3] 2R_5225887_SNP [dm6]	G	C	4.637e^-4	0.926	INTRON Nipped-A
3L	12589322	3L_12589322_SNP [dm3] 3L_12596222_SNP [dm6]	C	T	4.638e^-4	0.926	DOWNSTREAM ara INTERGENIC
2L	19720520	2L_19720520_SNP [dm3] 2L_19720520_SNP [dm6]	T	C	4.638e^-4	0.926	INTRON Lar
2L	3713226	2L_3713226_SNP [dm3] 2L_3713226_SNP [dm6]	T	G	4.647e^-4	0.926	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15477967	X_15477967_SNP [dm3] X_15583934_SNP [dm6]	T	A	4.663e^-4	0.926	NON_SYNONYMOUS_CODING CG8097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22020295	2L_22020295_SNP [dm3] 2L_22020295_SNP [dm6]	G	T	4.683e^-4	0.926	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	8361385	X_8361385_SNP [dm3] X_8467352_SNP [dm6]	C	G	4.685e^-4	0.926	UPSTREAM CG33223 DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
2L	14160731	2L_14160731_SNP [dm3] 2L_14160731_SNP [dm6]	C	G	4.691e^-4	0.926	DOWNSTREAM CG43332 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20483510	2L_20483510_SNP [dm3] 2L_20483510_SNP [dm6]	G	A	4.693e^-4	0.926	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	15290345	2L_15290345_SNP [dm3] 2L_15290345_SNP [dm6]	A	G	4.699e^-4	0.926	INTERGENIC
2R	13601187	2R_13601187_SNP [dm3] 2R_17713682_SNP [dm6]	T	C	4.705e^-4	0.926	INTRON CG6424
2R	10021876	2R_10021876_SNP [dm3] 2R_14134371_SNP [dm6]	C	G	4.712e^-4	0.926	INTRON Prosap
2R	8114814	2R_8114814_SNP [dm3] 2R_12227309_SNP [dm6]	C	A	4.721e^-4	0.926	UPSTREAM CG8854 INTRON CG8854
2L	4017651	2L_4017651_SNP [dm3] 2L_4017651_SNP [dm6]	G	C	4.726e^-4	0.926	INTERGENIC
3R	10658695	3R_10658695_SNP [dm3] 3R_14832973_SNP [dm6]	G	A	4.729e^-4	0.926	INTRON btsz
2R	17095242	2R_17095242_SNP [dm3] 2R_21207737_SNP [dm6]	C	T	4.732e^-4	0.926	INTRON CG44245 & 1 other
X	20929310	X_20929310_DEL [dm3] X_21058283_DEL [dm6]	TG	T	4.734e^-4	0.926	INTRON bves
X	6903336	X_6903336_SNP [dm3] X_7009303_SNP [dm6]	A	C	4.738e^-4	0.926	UTR_3_PRIME cm DOWNSTREAM cm INTRON Inx7
X	3627180	X_3627180_SNP [dm3] X_3733147_SNP [dm6]	C	T	4.738e^-4	0.926	INTRON tlk
3R	21280220	3R_21280220_SNP [dm3] 3R_25454498_SNP [dm6]	T	G	4.763e^-4	0.926	INTRON Fur1
3L	17744931	3L_17744931_SNP [dm3] 3L_17751831_SNP [dm6]	A	T	4.772e^-4	0.926	UTR_3_PRIME Adgf-A
3L	10131000	3L_10131000_SNP [dm3] 3L_10137900_SNP [dm6]	A	G	4.773e^-4	0.926	INTRON dpr6
3R	21697068	3R_21697068_SNP [dm3] 3R_25871346_SNP [dm6]	C	T	4.779e^-4	0.926	UTR_3_PRIME CG5890
3L	16014946	3L_16014946_SNP [dm3] 3L_16021846_SNP [dm6]	T	C	4.780e^-4	0.926	UPSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	14679377	2L_14679377_SNP [dm3] 2L_14679377_SNP [dm6]	G	C	4.782e^-4	0.926	INTRON osp
4	1192361	4_1192361_SNP [dm3] 4_1171735_SNP [dm6]	A	G	4.791e^-4	0.926	DOWNSTREAM pho INTERGENIC	transposable element FlyBase
3L	17736914	3L_17736914_SNP [dm3] 3L_17743814_SNP [dm6]	T	C	4.793e^-4	0.926	INTRON Ccn
4	971541	4_971541_SNP [dm3] 4_950915_SNP [dm6]	C	T	4.796e^-4	0.926	DOWNSTREAM 4E-T INTERGENIC	transposable element FlyBase
3L	9900385	3L_9900385_SNP [dm3] 3L_9907285_SNP [dm6]	A	T	4.801e^-4	0.926	UPSTREAM CG34356 INTERGENIC
3R	24062059	3R_24062059_SNP [dm3] 3R_28236337_SNP [dm6]	G	A	4.801e^-4	0.926	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	2676926	3L_2676926_SNP [dm3] 3L_2676926_SNP [dm6]	G	A	4.803e^-4	0.926	INTRON Fife
3L	8344381	3L_8344381_SNP [dm3] 3L_8351281_SNP [dm6]	C	A	4.814e^-4	0.926	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad
4	981667	4_981667_SNP [dm3] 4_961041_SNP [dm6]	T	A	4.826e^-4	0.926	INTRON CR44030	transposable element FlyBase
3L	11655659	3L_11655659_SNP [dm3] 3L_11662559_SNP [dm6]	G	C	4.836e^-4	0.926	INTRON CG32085
2L	17422182	2L_17422182_SNP [dm3] 2L_17422182_SNP [dm6]	C	A	4.840e^-4	0.926	INTRON Dif
3L	2267958	3L_2267958_SNP [dm3] 3L_2267958_SNP [dm6]	T	C	4.842e^-4	0.926	NON_SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
3L	12476629	3L_12476629_SNP [dm3] 3L_12483529_SNP [dm6]	A	C	4.845e^-4	0.926	INTRON CG10663 & 1 other
3L	11650677	3L_11650677_SNP [dm3] 3L_11657577_SNP [dm6]	G	T	4.853e^-4	0.926	DOWNSTREAM mir-274 INTRON CG32085
3L	10733896	3L_10733896_SNP [dm3] 3L_10740796_SNP [dm6]	A	G	4.857e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12504141	3L_12504141_SNP [dm3] 3L_12511041_SNP [dm6]	G	C	4.858e^-4	0.926	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15308438	3L_15308438_DEL [dm3] 3L_15315338_DEL [dm6]	AAGAAATGAA	A	4.860e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
4	877146	4_877146_SNP [dm3] 4_856520_SNP [dm6]	G	A	4.863e^-4	0.926	INTRON CG11148	transposable element FlyBase
3R	1421880	3R_1421880_SNP [dm3] 3R_5596158_SNP [dm6]	G	A	4.869e^-4	0.926	DOWNSTREAM snoRNA:Psi28S-3385b & 4 others INTRON kra	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15196543	3L_15196543_SNP [dm3] 3L_15203443_SNP [dm6]	T	C	4.873e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3L	13898168	3L_13898168_INS [dm3] 3L_13905068_INS [dm6]	A	AAATTA	4.875e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13898175	3L_13898175_SNP [dm3] 3L_13905075_SNP [dm6]	A	C	4.875e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14715310	2R_14715310_SNP [dm3] 2R_18827805_SNP [dm6]	G	A	4.876e^-4	0.926	INTRON CG15097
3L	14855076	3L_14855076_SNP [dm3] 3L_14861976_SNP [dm6]	G	A	4.878e^-4	0.926	INTRON CG17839	TF binding site mE1_TFBS_inv
X	924916	X_924916_SNP [dm3] X_1030883_SNP [dm6]	C	G	4.879e^-4	0.926	NON_SYNONYMOUS_CODING CG33082 UPSTREAM CG14630 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	11638856	2R_11638856_SNP [dm3] 2R_15751351_SNP [dm6]	G	A	4.879e^-4	0.926	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13331791	2L_13331791_SNP [dm3] 2L_13331791_SNP [dm6]	A	G	4.881e^-4	0.926	UPSTREAM CG43778 INTERGENIC
2R	14403088	2R_14403088_SNP [dm3] 2R_18515583_SNP [dm6]	T	C	4.886e^-4	0.926	INTRON CG43066
2R	10475967	2R_10475967_SNP [dm3] 2R_14588462_SNP [dm6]	G	A	4.928e^-4	0.926	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23081744	3R_23081744_SNP [dm3] 3R_27256022_SNP [dm6]	C	T	4.929e^-4	0.926	DOWNSTREAM woc INTRON TfIIA-L	TF binding site BDTNP1_TFBS_z
2R	9148538	2R_9148538_SNP [dm3] 2R_13261033_SNP [dm6]	G	T	4.930e^-4	0.926	INTRON CG42319
2L	658460	2L_658460_SNP [dm3] 2L_658460_SNP [dm6]	C	G	4.936e^-4	0.926	INTRON ds
2R	10230480	2R_10230480_SNP [dm3] 2R_14342975_SNP [dm6]	G	C	4.941e^-4	0.926	INTRON Shroom
3L	3885813	3L_3885813_SNP [dm3] 3L_3885813_SNP [dm6]	C	T	4.943e^-4	0.926	INTERGENIC
2R	7426837	2R_7426837_SNP [dm3] 2R_11539332_SNP [dm6]	T	C	4.945e^-4	0.926	INTERGENIC
2L	9111822	2L_9111822_SNP [dm3] 2L_9111822_SNP [dm6]	G	A	4.954e^-4	0.926	SYNONYMOUS_CODING Or30a
2L	1015888	2L_1015888_SNP [dm3] 2L_1015888_SNP [dm6]	A	G	4.956e^-4	0.926	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7421497	2L_7421497_SNP [dm3] 2L_7421497_SNP [dm6]	G	T	4.963e^-4	0.926	SYNONYMOUS_CODING chm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19687369	2L_19687369_SNP [dm3] 2L_19687369_SNP [dm6]	G	C	4.968e^-4	0.926	INTRON Lar
3L	15196534	3L_15196534_SNP [dm3] 3L_15203434_SNP [dm6]	A	T	4.972e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3R	25438006	3R_25438006_SNP [dm3] 3R_29612284_SNP [dm6]	T	G	4.975e^-4	0.926	INTRON alph
2L	3416477	2L_3416477_DEL [dm3] 2L_3416477_DEL [dm6]	CAC	C	4.978e^-4	0.926	UPSTREAM CG31952 INTRON pgant2
3L	4631357	3L_4631357_SNP [dm3] 3L_4631357_SNP [dm6]	T	A	4.980e^-4	0.926	INTRON axo
3L	17902633	3L_17902633_SNP [dm3] 3L_17909533_SNP [dm6]	C	A	4.982e^-4	0.926	UTR_3_PRIME CG14353 & 1 other	TF binding site mE1_TFBS_sbb
2R	12130177	2R_12130177_SNP [dm3] 2R_16242672_SNP [dm6]	A	C	4.985e^-4	0.926	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2R	11330693	2R_11330693_SNP [dm3] 2R_15443188_SNP [dm6]	C	A	4.986e^-4	0.926	INTRON CG43729
3L	15196491	3L_15196491_SNP [dm3] 3L_15203391_SNP [dm6]	G	C	4.989e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3L	15196494	3L_15196494_DEL [dm3] 3L_15203394_DEL [dm6]	TTCTTGAGAA	G	4.989e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3L	12884135	3L_12884135_SNP [dm3] 3L_12891035_SNP [dm6]	T	A	4.993e^-4	0.926	NON_SYNONYMOUS_CODING CG43894 INTRON CG43894
3R	9374999	3R_9374999_INS [dm3] 3R_13549277_INS [dm6]	T	TTT	4.993e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16013374	3L_16013374_SNP [dm3] 3L_16020274_SNP [dm6]	A	T	5.006e^-4	0.926	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16013375	3L_16013375_SNP [dm3] 3L_16020275_SNP [dm6]	C	T	5.006e^-4	0.926	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	13048509	2L_13048509_SNP [dm3] 2L_13048509_SNP [dm6]	A	T	5.007e^-4	0.926	INTRON CG9932
2R	10021889	2R_10021889_SNP [dm3] 2R_14134384_SNP [dm6]	A	C	5.014e^-4	0.926	INTRON Prosap
3R	21114557	3R_21114557_SNP [dm3] 3R_25288835_SNP [dm6]	T	C	5.016e^-4	0.926	SYNONYMOUS_CODING CG13658
3L	10246006	3L_10246006_SNP [dm3] 3L_10252906_SNP [dm6]	C	T	5.022e^-4	0.926	INTERGENIC
3R	26219445	3R_26219445_SNP [dm3] 3R_30393723_SNP [dm6]	T	C	5.026e^-4	0.926	INTERGENIC
3L	5711972	3L_5711972_SNP [dm3] 3L_5718872_SNP [dm6]	G	T	5.026e^-4	0.926	INTRON sif

By genomic position
Variant impact
Gene name

MenadioneSodBi_Resis phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results