DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.371e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2295 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4364892	2L_4364892_SNP [dm3] 2L_4364892_SNP [dm6]	A	G	6.695e^-7	0.69	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	15776481	X_15776481_SNP [dm3] X_15882448_SNP [dm6]	C	T	8.689e^-7	0.69	SYNONYMOUS_CODING tay
3L	12472751	3L_12472751_SNP [dm3] 3L_12479651_SNP [dm6]	A	C	1.688e^-6	0.69	INTRON CG10663
3R	16277317	3R_16277317_SNP [dm3] 3R_20451595_SNP [dm6]	C	G	1.801e^-6	0.69	INTRON Gfrl
3L	2030346	3L_2030346_SNP [dm3] 3L_2030346_SNP [dm6]	T	A	1.839e^-6	0.69	INTERGENIC
3L	11169230	3L_11169230_SNP [dm3] 3L_11176130_SNP [dm6]	T	C	4.482e^-6	0.755	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
2L	1562913	2L_1562913_SNP [dm3] 2L_1562913_SNP [dm6]	G	A	4.574e^-6	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	4748714	2L_4748714_SNP [dm3] 2L_4748714_SNP [dm6]	T	C	4.710e^-6	0.755	INTRON CG15630
3R	10139978	3R_10139978_SNP [dm3] 3R_14314256_SNP [dm6]	G	C	5.407e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
3R	14156978	3R_14156978_SNP [dm3] 3R_18331256_SNP [dm6]	C	G	5.726e^-6	0.755	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5886716	2L_5886716_SNP [dm3] 2L_5886716_SNP [dm6]	C	T	6.245e^-6	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2L	3520584	2L_3520584_SNP [dm3] 2L_3520584_SNP [dm6]	G	T	6.248e^-6	0.755	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2L	5619399	2L_5619399_SNP [dm3] 2L_5619399_SNP [dm6]	T	C	6.255e^-6	0.755	DOWNSTREAM CR44796 INTERGENIC
3R	10139973	3R_10139973_SNP [dm3] 3R_14314251_SNP [dm6]	A	T	6.709e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
3L	8667196	3L_8667196_SNP [dm3] 3L_8674096_SNP [dm6]	A	T	7.222e^-6	0.755	INTERGENIC	regulatory region REDfly_CRMs
3L	3119783	3L_3119783_SNP [dm3] 3L_3119783_SNP [dm6]	T	C	7.310e^-6	0.755	INTRON prominin-like
2L	5886702	2L_5886702_SNP [dm3] 2L_5886702_SNP [dm6]	G	A	8.769e^-6	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	23614154	3R_23614154_SNP [dm3] 3R_27788432_SNP [dm6]	C	A	8.836e^-6	0.755	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	8159185	2L_8159185_SNP [dm3] 2L_8159185_SNP [dm6]	C	A	9.049e^-6	0.755	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
3R	10139977	3R_10139977_SNP [dm3] 3R_14314255_SNP [dm6]	G	A	9.393e^-6	0.755	UTR_3_PRIME CG31321 UPSTREAM Crz
2R	9462833	2R_9462833_SNP [dm3] 2R_13575328_SNP [dm6]	A	T	1.061e^-5	0.755	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18052238	3R_18052238_SNP [dm3] 3R_22226516_SNP [dm6]	A	T	1.130e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1900894	2L_1900894_SNP [dm3] 2L_1900894_SNP [dm6]	T	A	1.264e^-5	0.755	INTRON CG7337
3L	8620006	3L_8620006_INS [dm3] 3L_8626906_INS [dm6]	A	ACTCTA	1.267e^-5	0.755	INTRON Zasp66
2L	8159111	2L_8159111_SNP [dm3] 2L_8159111_SNP [dm6]	A	T	1.270e^-5	0.755	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
2L	7915859	2L_7915859_SNP [dm3] 2L_7915859_SNP [dm6]	T	C	1.359e^-5	0.755	INTRON Snoo
3R	18052234	3R_18052234_SNP [dm3] 3R_22226512_SNP [dm6]	G	T	1.377e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13893745	2L_13893745_SNP [dm3] 2L_13893745_SNP [dm6]	C	T	1.412e^-5	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	10728640	2L_10728640_SNP [dm3] 2L_10728640_SNP [dm6]	G	A	1.426e^-5	0.755	SYNONYMOUS_CODING CG6431 UPSTREAM CG6443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21470420	X_21470420_SNP [dm3] X_21599393_SNP [dm6]	G	T	1.473e^-5	0.755	INTERGENIC
2L	11936935	2L_11936935_SNP [dm3] 2L_11936935_SNP [dm6]	T	A	1.494e^-5	0.755	INTRON Or33b
X	18910557	X_18910557_SNP [dm3] X_19016524_SNP [dm6]	T	C	1.504e^-5	0.755	INTRON CG43759
3L	5488942	3L_5488942_SNP [dm3] 3L_5495842_SNP [dm6]	G	C	1.539e^-5	0.755	INTERGENIC
2L	5886768	2L_5886768_SNP [dm3] 2L_5886768_SNP [dm6]	A	G	1.555e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2R	9461631	2R_9461631_SNP [dm3] 2R_13574126_SNP [dm6]	G	T	1.628e^-5	0.755	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12509528	3L_12509528_SNP [dm3] 3L_12516428_SNP [dm6]	C	A	1.656e^-5	0.755	INTRON tral	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16742382	3L_16742382_SNP [dm3] 3L_16749282_SNP [dm6]	G	T	1.657e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10007414	3L_10007414_SNP [dm3] 3L_10014314_SNP [dm6]	A	G	1.960e^-5	0.755	INTRON dpr6	TF binding site mE1_TFBS_kn
2L	14132401	2L_14132401_SNP [dm3] 2L_14132401_SNP [dm6]	A	G	2.029e^-5	0.755	INTERGENIC
2R	16413871	2R_16413871_SNP [dm3] 2R_20526366_SNP [dm6]	T	C	2.071e^-5	0.755	NON_SYNONYMOUS_CODING CG13422 DOWNSTREAM CR44650
2L	11936964	2L_11936964_SNP [dm3] 2L_11936964_SNP [dm6]	A	T	2.090e^-5	0.755	INTRON Or33b
2L	13893668	2L_13893668_SNP [dm3] 2L_13893668_SNP [dm6]	T	G	2.093e^-5	0.755	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3119991	3L_3119991_SNP [dm3] 3L_3119991_SNP [dm6]	A	G	2.093e^-5	0.755	INTRON prominin-like
3R	13323704	3R_13323704_SNP [dm3] 3R_17497982_SNP [dm6]	G	T	2.192e^-5	0.755	INTRON Dscam3
2R	9461643	2R_9461643_SNP [dm3] 2R_13574138_SNP [dm6]	C	T	2.266e^-5	0.755	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5619400	2L_5619400_SNP [dm3] 2L_5619400_SNP [dm6]	T	C	2.273e^-5	0.755	DOWNSTREAM CR44796 INTERGENIC
2L	10729750	2L_10729750_SNP [dm3] 2L_10729750_SNP [dm6]	G	T	2.310e^-5	0.755	NON_SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10729780	2L_10729780_SNP [dm3] 2L_10729780_SNP [dm6]	G	C	2.310e^-5	0.755	NON_SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11936922	2L_11936922_DEL [dm3] 2L_11936922_DEL [dm6]	ATA	A	2.349e^-5	0.755	INTRON Or33b
2L	4420455	2L_4420455_SNP [dm3] 2L_4420455_SNP [dm6]	T	A	2.407e^-5	0.755	INTRON CG15431
X	3448434	X_3448434_SNP [dm3] X_3554401_SNP [dm6]	G	T	2.508e^-5	0.755	INTRON CG32791	TF binding site mE1_TFBS_HSA
X	19142404	X_19142404_SNP [dm3] X_19248371_SNP [dm6]	A	G	2.713e^-5	0.755	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1584903	3L_1584903_SNP [dm3] 3L_1584903_SNP [dm6]	T	C	2.721e^-5	0.755	INTRON CG13917
X	18917572	X_18917572_SNP [dm3] X_19023539_SNP [dm6]	C	T	2.723e^-5	0.755	INTRON CG43759
3R	21115270	3R_21115270_SNP [dm3] 3R_25289548_SNP [dm6]	A	T	2.726e^-5	0.755	UPSTREAM CG11893 DOWNSTREAM CG13658 INTERGENIC
3L	8693902	3L_8693902_SNP [dm3] 3L_8700802_SNP [dm6]	T	C	2.756e^-5	0.755	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	13698923	2L_13698923_SNP [dm3] 2L_13698923_SNP [dm6]	A	G	2.756e^-5	0.755	INTRON CG31814
2L	7002225	2L_7002225_SNP [dm3] 2L_7002225_SNP [dm6]	T	C	2.764e^-5	0.755	INTRON uif
X	18915707	X_18915707_SNP [dm3] X_19021674_SNP [dm6]	G	T	2.795e^-5	0.755	INTRON CG43759
2L	740788	2L_740788_SNP [dm3] 2L_740788_SNP [dm6]	A	T	2.846e^-5	0.755	INTRON Eaat2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8153042	2L_8153042_SNP [dm3] 2L_8153042_SNP [dm6]	T	G	2.883e^-5	0.755	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	2.899e^-5	0.755	INTRON uif
2L	19972934	2L_19972934_SNP [dm3] 2L_19972934_SNP [dm6]	T	G	3.037e^-5	0.755	INTRON CG43861
X	14751464	X_14751464_SNP [dm3] X_14857431_SNP [dm6]	C	A	3.056e^-5	0.755	INTRON Flo2
2L	1913023	2L_1913023_INS [dm3] 2L_1913023_INS [dm6]	G	GTA	3.102e^-5	0.755	INTRON CG7337
2L	1913026	2L_1913026_DEL [dm3] 2L_1913026_DEL [dm6]	TTACTCA	T	3.102e^-5	0.755	INTRON CG7337
X	18909238	X_18909238_SNP [dm3] X_19015205_SNP [dm6]	C	T	3.120e^-5	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5887284	2L_5887284_SNP [dm3] 2L_5887284_SNP [dm6]	T	G	3.177e^-5	0.755	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3R	15130718	3R_15130718_SNP [dm3] 3R_19304996_SNP [dm6]	A	G	3.208e^-5	0.755	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	3067516	3R_3067516_SNP [dm3] 3R_7241794_SNP [dm6]	G	A	3.244e^-5	0.755	UTR_5_PRIME CG14607 DOWNSTREAM CG14608
2R	12774793	2R_12774793_SNP [dm3] 2R_16887288_SNP [dm6]	G	A	3.288e^-5	0.755	INTRON CG8910
3R	6115838	3R_6115838_SNP [dm3] 3R_10290116_SNP [dm6]	G	C	3.323e^-5	0.755	UPSTREAM CG43143 INTRON CG43143
3L	5955059	3L_5955059_SNP [dm3] 3L_5961959_SNP [dm6]	A	T	3.384e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18052263	3R_18052263_SNP [dm3] 3R_22226541_SNP [dm6]	T	A	3.534e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11144361	2R_11144361_SNP [dm3] 2R_15256856_SNP [dm6]	G	T	3.543e^-5	0.755	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7915843	2L_7915843_SNP [dm3] 2L_7915843_SNP [dm6]	G	A	3.554e^-5	0.755	INTRON Snoo
2L	1559152	2L_1559152_SNP [dm3] 2L_1559152_SNP [dm6]	A	G	3.639e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_HSA
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	3.648e^-5	0.755	INTERGENIC
2L	1563970	2L_1563970_SNP [dm3] 2L_1563970_SNP [dm6]	A	G	3.650e^-5	0.755	INTRON haf	TF binding site mE1_TFBS_inv
2L	4452958	2L_4452958_SNP [dm3] 2L_4452958_SNP [dm6]	A	G	3.650e^-5	0.755	START_GAINED CG15439 UTR_5_PRIME CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5886808	2L_5886808_SNP [dm3] 2L_5886808_SNP [dm6]	A	T	3.682e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
2L	5886876	2L_5886876_SNP [dm3] 2L_5886876_SNP [dm6]	C	T	3.684e^-5	0.755	DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	20598390	3R_20598390_SNP [dm3] 3R_24772668_SNP [dm6]	G	A	3.780e^-5	0.755	INTRON CG42331
X	5327578	X_5327578_SNP [dm3] X_5433545_SNP [dm6]	A	C	3.782e^-5	0.755	EXON CR44471	TF binding site mE1_TFBS_Trl
3L	6292485	3L_6292485_SNP [dm3] 3L_6299385_SNP [dm6]	T	C	3.849e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8021614	3L_8021614_SNP [dm3] 3L_8028514_SNP [dm6]	T	C	3.894e^-5	0.755	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
X	19142228	X_19142228_INS [dm3] X_19248195_INS [dm6]	T	TGTAT	3.943e^-5	0.755	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7917763	2L_7917763_DEL [dm3] 2L_7917763_DEL [dm6]	GCG	G	3.970e^-5	0.755	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7915846	2L_7915846_SNP [dm3] 2L_7915846_SNP [dm6]	A	T	4.027e^-5	0.755	INTRON Snoo
2L	2761176	2L_2761176_SNP [dm3] 2L_2761176_SNP [dm6]	A	C	4.028e^-5	0.755	SYNONYMOUS_CODING Trn-SR	TF binding site mE1_TFBS_cad
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	4.096e^-5	0.755	INTERGENIC
2R	3457569	2R_3457569_SNP [dm3] 2R_7570064_SNP [dm6]	G	A	4.105e^-5	0.755	NON_SYNONYMOUS_CODING Vps13
3R	17862944	3R_17862944_SNP [dm3] 3R_22037222_SNP [dm6]	G	T	4.126e^-5	0.755	DOWNSTREAM scaRNA:MeU5-G38 INTRON pit
2L	7916584	2L_7916584_DEL [dm3] 2L_7916584_DEL [dm6]	TT	T	4.158e^-5	0.755	INTRON Snoo
2L	12681990	2L_12681990_SNP [dm3] 2L_12681990_SNP [dm6]	A	C	4.182e^-5	0.755	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	17862987	3R_17862987_SNP [dm3] 3R_22037265_SNP [dm6]	G	A	4.258e^-5	0.755	SYNONYMOUS_CODING pit DOWNSTREAM scaRNA:MeU5-G38
3L	5711972	3L_5711972_SNP [dm3] 3L_5718872_SNP [dm6]	G	T	4.356e^-5	0.755	INTRON sif
3R	18052205	3R_18052205_SNP [dm3] 3R_22226483_SNP [dm6]	G	T	4.376e^-5	0.755	INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1567562	2L_1567562_SNP [dm3] 2L_1567562_SNP [dm6]	T	G	4.468e^-5	0.755	INTRON haf
2L	4754632	2L_4754632_SNP [dm3] 2L_4754632_SNP [dm6]	T	C	4.505e^-5	0.755	INTRON CG15630

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.033e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	2.82e-07
In_2R_NS	0.05487
In_3R_K	0.04071

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	23.5992	1.1864e-06
In_3R_K	4.6536	0.0976

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1965 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	7748840	X_7748840_SNP [dm3] X_7854807_SNP [dm6]	T	A	7.476e^-7	0.847	UPSTREAM CG10920 INTERGENIC
3R	24902133	3R_24902133_SNP [dm3] 3R_29076411_SNP [dm6]	G	T	1.622e^-6	0.847	INTRON CG11873
2L	3884498	2L_3884498_SNP [dm3] 2L_3884498_SNP [dm6]	G	A	2.993e^-6	0.847	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_cad
3R	11695487	3R_11695487_SNP [dm3] 3R_15869765_SNP [dm6]	T	C	3.641e^-6	0.847	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15119664	2R_15119664_SNP [dm3] 2R_19232159_SNP [dm6]	A	C	3.969e^-6	0.847	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	9462833	2R_9462833_SNP [dm3] 2R_13575328_SNP [dm6]	A	T	4.539e^-6	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17582092	2R_17582092_SNP [dm3] 2R_21694587_SNP [dm6]	A	G	5.224e^-6	0.847	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3R	25674822	3R_25674822_SNP [dm3] 3R_29849100_SNP [dm6]	A	T	7.152e^-6	0.847	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
3L	3071049	3L_3071049_SNP [dm3] 3L_3071049_SNP [dm6]	T	A	7.576e^-6	0.847	UPSTREAM CG11486 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7748876	X_7748876_SNP [dm3] X_7854843_SNP [dm6]	C	A	8.491e^-6	0.847	UPSTREAM CG10920 INTERGENIC
2R	8127278	2R_8127278_MNP [dm3] 2R_12239773_MNP [dm6]	TTT	CAC	9.782e^-6	0.847	UPSTREAM CG13170 INTERGENIC
X	14026961	X_14026961_SNP [dm3] X_14132928_SNP [dm6]	G	A	1.008e^-5	0.847	INTERGENIC
3L	13973028	3L_13973028_SNP [dm3] 3L_13979928_SNP [dm6]	C	T	1.051e^-5	0.847	INTRON CG17364
2L	19962182	2L_19962182_SNP [dm3] 2L_19962182_SNP [dm6]	G	A	1.092e^-5	0.847	SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2516609	2L_2516609_SNP [dm3] 2L_2516609_SNP [dm6]	A	G	1.196e^-5	0.847	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	1026382	4_1026382_SNP [dm3] 4_1005756_SNP [dm6]	T	G	1.311e^-5	0.847	INTRON toy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2836822	2L_2836822_SNP [dm3] 2L_2836822_SNP [dm6]	G	T	1.316e^-5	0.847	INTRON CG3119
2R	14755046	2R_14755046_SNP [dm3] 2R_18867541_SNP [dm6]	A	G	1.317e^-5	0.847	DOWNSTREAM CG43109 INTRON DptB
3L	3599150	3L_3599150_SNP [dm3] 3L_3599150_SNP [dm6]	A	C	1.355e^-5	0.847	INTRON Eip63E
2L	14084064	2L_14084064_SNP [dm3] 2L_14084064_SNP [dm6]	G	A	1.364e^-5	0.847	INTRON nAChRalpha5
2R	13596327	2R_13596327_SNP [dm3] 2R_17708822_SNP [dm6]	T	A	1.464e^-5	0.847	UTR_5_PRIME CG6424 INTRON CG6424
2R	11144361	2R_11144361_SNP [dm3] 2R_15256856_SNP [dm6]	G	T	1.481e^-5	0.847	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5163084	2L_5163084_SNP [dm3] 2L_5163084_SNP [dm6]	G	A	1.492e^-5	0.847	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3599128	3L_3599128_SNP [dm3] 3L_3599128_SNP [dm6]	G	C	1.535e^-5	0.847	INTRON Eip63E
3L	10357704	3L_10357704_SNP [dm3] 3L_10364604_SNP [dm6]	T	C	1.549e^-5	0.847	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	12570650	2L_12570650_SNP [dm3] 2L_12570650_SNP [dm6]	C	A	1.582e^-5	0.847	DOWNSTREAM CR44598 & 1 other INTERGENIC
4	879680	4_879680_SNP [dm3] 4_859054_SNP [dm6]	T	C	1.599e^-5	0.847	INTRON CG11148	transposable element FlyBase
3L	21585737	3L_21585737_SNP [dm3] 3L_21592637_SNP [dm6]	A	G	1.624e^-5	0.847	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9463408	2R_9463408_SNP [dm3] 2R_13575903_SNP [dm6]	A	T	1.669e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2L	3401963	2L_3401963_SNP [dm3] 2L_3401963_SNP [dm6]	T	G	1.683e^-5	0.847	INTERGENIC
3R	6116239	3R_6116239_SNP [dm3] 3R_10290517_SNP [dm6]	A	C	1.809e^-5	0.847	UPSTREAM CG43143 INTRON CG43143
2R	16987070	2R_16987070_SNP [dm3] 2R_21099565_SNP [dm6]	T	C	1.819e^-5	0.847	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13388012	2R_13388012_SNP [dm3] 2R_17500507_SNP [dm6]	T	A	1.833e^-5	0.847	INTERGENIC	TF binding site mE1_TFBS_inv
X	22240772	X_22240772_SNP [dm3] X_22838936_SNP [dm6]	C	T	1.981e^-5	0.847	INTRON fog & 1 other
3L	3597912	3L_3597912_SNP [dm3] 3L_3597912_SNP [dm6]	C	T	1.984e^-5	0.847	INTRON Eip63E	TF binding site mE1_TFBS_cad
X	21905024	X_21905024_DEL [dm3] X_22503188_DEL [dm6]	CAAA	T	2.046e^-5	0.847	INTRON l_1_G0196
3R	24237882	3R_24237882_SNP [dm3] 3R_28412160_SNP [dm6]	C	T	2.149e^-5	0.847	INTERGENIC
X	21905021	X_21905021_SNP [dm3] X_22503185_SNP [dm6]	T	G	2.311e^-5	0.847	INTRON l_1_G0196
3L	9645115	3L_9645115_SNP [dm3] 3L_9652015_SNP [dm6]	G	A	2.312e^-5	0.847	INTRON fry & 1 other
3L	2686810	3L_2686810_SNP [dm3] 3L_2686810_SNP [dm6]	T	C	2.335e^-5	0.847	INTRON Fife
X	22240773	X_22240773_SNP [dm3] X_22838937_SNP [dm6]	T	A	2.376e^-5	0.847	INTRON fog & 1 other
3R	24324493	3R_24324493_SNP [dm3] 3R_28498771_SNP [dm6]	G	A	2.442e^-5	0.847	INTRON Dhc98D
3R	24237872	3R_24237872_SNP [dm3] 3R_28412150_SNP [dm6]	C	A	2.536e^-5	0.847	INTERGENIC
3L	8667196	3L_8667196_SNP [dm3] 3L_8674096_SNP [dm6]	A	T	2.564e^-5	0.847	INTERGENIC	regulatory region REDfly_CRMs
3L	12518125	3L_12518125_SNP [dm3] 3L_12525025_SNP [dm6]	A	G	2.564e^-5	0.847	SYNONYMOUS_CODING ver DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16161654	X_16161654_SNP [dm3] X_16267621_SNP [dm6]	G	A	2.659e^-5	0.847	SYNONYMOUS_CODING kat80
2R	13596329	2R_13596329_SNP [dm3] 2R_17708824_SNP [dm6]	C	T	2.676e^-5	0.847	UTR_5_PRIME CG6424 INTRON CG6424
3R	8069590	3R_8069590_SNP [dm3] 3R_12243868_SNP [dm6]	G	A	2.747e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	12992913	2R_12992913_SNP [dm3] 2R_17105408_SNP [dm6]	G	T	2.839e^-5	0.847	INTRON CG30456
2R	9463447	2R_9463447_SNP [dm3] 2R_13575942_SNP [dm6]	G	T	2.879e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	7807839	X_7807839_DEL [dm3] X_7913806_DEL [dm6]	TA	T	2.950e^-5	0.847	SPLICE_SITE_REGION snz INTRON snz
X	17084119	X_17084119_SNP [dm3] X_17190086_SNP [dm6]	T	C	2.981e^-5	0.847	SYNONYMOUS_CODING baz	TF binding site mE1_TFBS_chinmo
X	21226306	X_21226306_SNP [dm3] X_21355279_SNP [dm6]	A	G	2.982e^-5	0.847	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20501638	2R_20501638_DEL [dm3] 2R_24614115_DEL [dm6]	TATGGAC	G	3.004e^-5	0.847	DOWNSTREAM CG3608 INTRON CG4741
2R	14755006	2R_14755006_SNP [dm3] 2R_18867501_SNP [dm6]	C	T	3.066e^-5	0.847	NON_SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2R	16038418	2R_16038418_SNP [dm3] 2R_20150913_SNP [dm6]	G	T	3.196e^-5	0.847	EXON CR45229
3L	3437390	3L_3437390_SNP [dm3] 3L_3437390_SNP [dm6]	A	G	3.271e^-5	0.847	INTRON eIF5B
X	12923269	X_12923269_SNP [dm3] X_13029236_SNP [dm6]	C	T	3.284e^-5	0.847	INTRON rad
X	14390360	X_14390360_SNP [dm3] X_14496327_SNP [dm6]	A	G	3.331e^-5	0.847	SYNONYMOUS_CODING CG12540
2L	736277	2L_736277_SNP [dm3] 2L_736277_SNP [dm6]	A	G	3.379e^-5	0.847	DOWNSTREAM Eaat2 INTERGENIC
4	652615	4_652615_SNP [dm3] 4_631989_SNP [dm6]	G	A	3.382e^-5	0.847	INTRON CG1732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2686823	3L_2686823_SNP [dm3] 3L_2686823_SNP [dm6]	C	A	3.388e^-5	0.847	INTRON Fife
X	19759785	X_19759785_SNP [dm3] X_19865752_SNP [dm6]	A	T	3.416e^-5	0.847	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
3R	4193131	3R_4193131_SNP [dm3] 3R_8367409_SNP [dm6]	C	A	3.724e^-5	0.847	UTR_3_PRIME CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
3L	2850234	3L_2850234_SNP [dm3] 3L_2850234_SNP [dm6]	T	A	3.748e^-5	0.847	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13973043	3L_13973043_SNP [dm3] 3L_13979943_SNP [dm6]	C	A	3.764e^-5	0.847	INTRON CG17364
2L	12384164	2L_12384164_INS [dm3] 2L_12384164_INS [dm6]	T	TACACT	3.946e^-5	0.847	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13973074	3L_13973074_SNP [dm3] 3L_13979974_SNP [dm6]	A	T	3.959e^-5	0.847	INTRON CG17364
3L	9104047	3L_9104047_INS [dm3] 3L_9110947_INS [dm6]	G	GTGGCAGTG	4.058e^-5	0.847	INTRON bol
X	14802248	X_14802248_SNP [dm3] X_14908215_SNP [dm6]	C	T	4.144e^-5	0.847	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
3L	16328563	3L_16328563_SNP [dm3] 3L_16335463_SNP [dm6]	A	T	4.212e^-5	0.847	INTERGENIC
X	21904999	X_21904999_MNP [dm3] X_22503163_MNP [dm6]	CGA	TTG	4.218e^-5	0.847	INTRON l_1_G0196
3L	6282767	3L_6282767_SNP [dm3] 3L_6289667_SNP [dm6]	G	A	4.229e^-5	0.847	INTERGENIC
X	13252771	X_13252771_SNP [dm3] X_13358738_SNP [dm6]	C	T	4.258e^-5	0.847	UPSTREAM Syt12 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	915288	2L_915288_SNP [dm3] 2L_915288_SNP [dm6]	C	A	4.275e^-5	0.847	INTRON GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9463229	2R_9463229_SNP [dm3] 2R_13575724_SNP [dm6]	A	G	4.280e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
X	21905018	X_21905018_SNP [dm3] X_22503182_SNP [dm6]	G	A	4.310e^-5	0.847	INTRON l_1_G0196
X	16748487	X_16748487_SNP [dm3] X_16854454_SNP [dm6]	A	T	4.318e^-5	0.847	INTRON CG13003
3R	19534637	3R_19534637_SNP [dm3] 3R_23708915_SNP [dm6]	T	C	4.336e^-5	0.847	DOWNSTREAM CG31414 INTERGENIC
2L	18442382	2L_18442382_SNP [dm3] 2L_18442382_SNP [dm6]	G	T	4.389e^-5	0.847	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	16987077	2R_16987077_SNP [dm3] 2R_21099572_SNP [dm6]	G	A	4.434e^-5	0.847	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21017532	3R_21017532_SNP [dm3] 3R_25191810_SNP [dm6]	C	A	4.448e^-5	0.847	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11433455	2L_11433455_INS [dm3] 2L_11433455_INS [dm6]	T	TATCTTGTAAT...	4.483e^-5	0.847	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12570631	2L_12570631_SNP [dm3] 2L_12570631_SNP [dm6]	A	G	4.541e^-5	0.847	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	7278803	3R_7278803_SNP [dm3] 3R_11453081_SNP [dm6]	C	A	4.543e^-5	0.847	NON_SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
4	909588	4_909588_SNP [dm3] 4_888962_SNP [dm6]	C	G	4.549e^-5	0.847	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
2R	9460400	2R_9460400_SNP [dm3] 2R_13572895_SNP [dm6]	G	T	4.561e^-5	0.847	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3R	7875791	3R_7875791_DEL [dm3] 3R_12050069_DEL [dm6]	TT	T	4.619e^-5	0.847	UPSTREAM CG14739 INTERGENIC
3L	21585680	3L_21585680_SNP [dm3] 3L_21592580_SNP [dm6]	C	T	4.640e^-5	0.847	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4121731	3L_4121731_SNP [dm3] 3L_4121731_SNP [dm6]	G	A	4.720e^-5	0.847	INTRON Chd64
X	14390430	X_14390430_SNP [dm3] X_14496397_SNP [dm6]	A	T	4.734e^-5	0.847	INTRON CG12540
3L	16745823	3L_16745823_DEL [dm3] 3L_16752723_DEL [dm6]	GCTGCCCTCCTTCG...	G	4.761e^-5	0.847	INTERGENIC
2R	9463203	2R_9463203_SNP [dm3] 2R_13575698_SNP [dm6]	A	C	4.761e^-5	0.847	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	13164340	3L_13164340_DEL [dm3] 3L_13171240_DEL [dm6]	CTTTGA	G	4.813e^-5	0.847	INTERGENIC
X	3754871	X_3754871_SNP [dm3] X_3860838_SNP [dm6]	A	C	4.824e^-5	0.847	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10021914	2R_10021914_INS [dm3] 2R_14134409_INS [dm6]	TC	AAGT	4.891e^-5	0.847	INTRON Prosap
3L	448287	3L_448287_SNP [dm3] 3L_448287_SNP [dm6]	A	G	5.014e^-5	0.847	UPSTREAM klar INTRON klar	TF binding site mE1_TFBS_cad
3L	9342168	3L_9342168_SNP [dm3] 3L_9349068_SNP [dm6]	C	A	5.123e^-5	0.847	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
3L	9645116	3L_9645116_INS [dm3] 3L_9652016_INS [dm6]	T	TAT	5.174e^-5	0.847	INTRON fry & 1 other
X	18994634	X_18994634_SNP [dm3] X_19100601_SNP [dm6]	C	T	5.202e^-5	0.847	INTERGENIC

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

By genomic position
Variant impact
Gene name

MenadioneSodBi_Resis phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results