DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.390e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2297 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16173490	3L_16173490_DEL [dm3] 3L_16180390_DEL [dm6]	AAATTCAAATATGCTATACG...	A	1.914e^-6	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16173511	3L_16173511_DEL [dm3] 3L_16180411_DEL [dm6]	CTA	C	1.914e^-6	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16173522	3L_16173522_DEL [dm3] 3L_16180422_DEL [dm6]	TTATGCAATTGCATTTTGCA...	T	1.914e^-6	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17705194	3L_17705194_SNP [dm3] 3L_17712094_SNP [dm6]	G	A	2.117e^-6	0.718	INTRON Ccn
3L	16797700	3L_16797700_DEL [dm3] 3L_16804600_DEL [dm6]	TACTACGTACCAAGCACTT...	T	2.759e^-6	0.718	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
2L	14976704	2L_14976704_SNP [dm3] 2L_14976704_SNP [dm6]	A	G	4.214e^-6	0.718	SYNONYMOUS_CODING mol
3L	16173521	3L_16173521_SNP [dm3] 3L_16180421_SNP [dm6]	C	T	4.309e^-6	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16173516	3L_16173516_SNP [dm3] 3L_16180416_SNP [dm6]	T	G	4.997e^-6	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7290749	2L_7290749_SNP [dm3] 2L_7290749_SNP [dm6]	T	C	5.251e^-6	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15353158	3R_15353158_SNP [dm3] 3R_19527436_SNP [dm6]	A	G	5.800e^-6	0.718	INTRON Dys
3L	17707855	3L_17707855_SNP [dm3] 3L_17714755_SNP [dm6]	T	C	6.301e^-6	0.718	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	16842959	2R_16842959_SNP [dm3] 2R_20955454_SNP [dm6]	C	T	6.362e^-6	0.718	SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2862446	2L_2862446_SNP [dm3] 2L_2862446_SNP [dm6]	G	C	6.716e^-6	0.718	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	10980742	X_10980742_DEL [dm3] X_11086709_DEL [dm6]	AGATGTATTTTCCA...	A	6.794e^-6	0.718	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	8504947	2L_8504947_SNP [dm3] 2L_8504947_SNP [dm6]	A	T	7.006e^-6	0.718	INTRON Dh31
2L	3901854	2L_3901854_SNP [dm3] 2L_3901854_SNP [dm6]	C	A	7.141e^-6	0.718	INTRON capu
3L	9200994	3L_9200994_SNP [dm3] 3L_9207894_SNP [dm6]	C	T	7.298e^-6	0.718	INTRON Slc45-1
3R	19864338	3R_19864338_SNP [dm3] 3R_24038616_SNP [dm6]	T	C	7.989e^-6	0.718	SYNONYMOUS_CODING spas UTR_5_PRIME Miro UPSTREAM Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	18197164	3L_18197164_SNP [dm3] 3L_18204064_SNP [dm6]	T	A	1.050e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	12693136	3L_12693136_SNP [dm3] 3L_12700036_SNP [dm6]	G	C	1.185e^-5	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_twi
X	15088821	X_15088821_SNP [dm3] X_15194788_SNP [dm6]	T	G	1.198e^-5	0.718	INTERGENIC
X	14779312	X_14779312_SNP [dm3] X_14885279_SNP [dm6]	G	A	1.245e^-5	0.718	DOWNSTREAM CG9514 INTRON Flo2
3L	15721991	3L_15721991_SNP [dm3] 3L_15728891_SNP [dm6]	C	T	1.259e^-5	0.718	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19140106	3L_19140106_SNP [dm3] 3L_19147006_SNP [dm6]	C	T	1.261e^-5	0.718	UPSTREAM fz2 INTRON fz2	TF binding site mE1_TFBS_cad
3L	18197167	3L_18197167_SNP [dm3] 3L_18204067_SNP [dm6]	G	T	1.288e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	2834536	2L_2834536_SNP [dm3] 2L_2834536_SNP [dm6]	G	T	1.303e^-5	0.718	DOWNSTREAM CG3119 INTERGENIC
2L	7291444	2L_7291444_SNP [dm3] 2L_7291444_SNP [dm6]	G	A	1.329e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8267089	2L_8267089_SNP [dm3] 2L_8267089_SNP [dm6]	T	C	1.334e^-5	0.718	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14077438	2R_14077438_SNP [dm3] 2R_18189933_SNP [dm6]	C	T	1.356e^-5	0.718	DOWNSTREAM CG14500 INTRON CG33958
2R	18321250	2R_18321250_SNP [dm3] 2R_22433745_SNP [dm6]	G	T	1.458e^-5	0.718	INTERGENIC
2L	5144668	2L_5144668_SNP [dm3] 2L_5144668_SNP [dm6]	A	C	1.464e^-5	0.718	SYNONYMOUS_CODING Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17391770	2R_17391770_SNP [dm3] 2R_21504265_SNP [dm6]	A	G	1.548e^-5	0.718	INTRON MESK2	TF binding site mE1_TFBS_inv
3L	17701690	3L_17701690_SNP [dm3] 3L_17708590_SNP [dm6]	C	T	1.615e^-5	0.718	INTRON Ccn
2R	19505678	2R_19505678_SNP [dm3] 2R_23618155_SNP [dm6]	G	C	1.729e^-5	0.718	INTERGENIC
3R	13945432	3R_13945432_SNP [dm3] 3R_18119710_SNP [dm6]	T	G	1.736e^-5	0.718	INTRON sr
3L	15873078	3L_15873078_SNP [dm3] 3L_15879978_SNP [dm6]	T	C	1.773e^-5	0.718	INTRON pHCl
2L	3407498	2L_3407498_SNP [dm3] 2L_3407498_SNP [dm6]	C	T	1.784e^-5	0.718	SYNONYMOUS_CODING pgant2
3L	18019355	3L_18019355_SNP [dm3] 3L_18026255_SNP [dm6]	G	C	1.821e^-5	0.718	INTRON Eip75B
2L	9457053	2L_9457053_SNP [dm3] 2L_9457053_SNP [dm6]	G	A	1.834e^-5	0.718	INTRON numb	regulatory region REDfly_CRMs
2L	7290710	2L_7290710_SNP [dm3] 2L_7290710_SNP [dm6]	G	A	1.835e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23912018	3R_23912018_SNP [dm3] 3R_28086296_SNP [dm6]	T	A	1.912e^-5	0.718	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
2R	18321251	2R_18321251_SNP [dm3] 2R_22433746_SNP [dm6]	T	G	1.931e^-5	0.718	INTERGENIC
2R	18321253	2R_18321253_INS [dm3] 2R_22433748_INS [dm6]	A	AACA	1.931e^-5	0.718	INTERGENIC
3L	16174366	3L_16174366_SNP [dm3] 3L_16181266_SNP [dm6]	G	A	1.974e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15879504	3L_15879504_SNP [dm3] 3L_15886404_SNP [dm6]	C	T	2.008e^-5	0.718	UPSTREAM CR44050 INTRON pHCl
3L	18197171	3L_18197171_SNP [dm3] 3L_18204071_SNP [dm6]	T	A	2.088e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8350496	2L_8350496_SNP [dm3] 2L_8350496_SNP [dm6]	C	T	2.112e^-5	0.718	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
3L	602326	3L_602326_SNP [dm3] 3L_602326_SNP [dm6]	A	G	2.128e^-5	0.718	INTRON CG13893
X	6490665	X_6490665_INS [dm3] X_6596632_INS [dm6]	A	AGA	2.135e^-5	0.718	UTR_3_PRIME Pat1 UPSTREAM APC7 DOWNSTREAM Pat1
2L	7290868	2L_7290868_SNP [dm3] 2L_7290868_SNP [dm6]	A	T	2.204e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10858596	2R_10858596_SNP [dm3] 2R_14971091_SNP [dm6]	T	C	2.216e^-5	0.718	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17177345	3L_17177345_SNP [dm3] 3L_17184245_SNP [dm6]	T	A	2.280e^-5	0.718	INTRON Rbp6
2L	1363574	2L_1363574_SNP [dm3] 2L_1363574_SNP [dm6]	G	A	2.318e^-5	0.718	INTERGENIC
X	15811723	X_15811723_SNP [dm3] X_15917690_SNP [dm6]	A	T	2.338e^-5	0.718	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18197169	3L_18197169_SNP [dm3] 3L_18204069_SNP [dm6]	A	C	2.371e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8504085	2L_8504085_SNP [dm3] 2L_8504085_SNP [dm6]	A	C	2.432e^-5	0.718	INTRON Dh31
2R	5680770	2R_5680770_SNP [dm3] 2R_9793265_SNP [dm6]	T	A	2.504e^-5	0.718	UTR_5_PRIME CG1688 UPSTREAM CG1698
X	14779301	X_14779301_SNP [dm3] X_14885268_SNP [dm6]	C	A	2.519e^-5	0.718	DOWNSTREAM CG9514 INTRON Flo2
3L	18008686	3L_18008686_INS [dm3] 3L_18015586_INS [dm6]	G	GGTAAT	2.697e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18008688	3L_18008688_SNP [dm3] 3L_18015588_SNP [dm6]	T	G	2.697e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8484921	2R_8484921_SNP [dm3] 2R_12597416_SNP [dm6]	G	A	2.925e^-5	0.718	INTRON Amph
2R	21105053	2R_21105053_SNP [dm3] 2R_25217530_SNP [dm6]	C	T	2.979e^-5	0.718	INTRON CG9380	regulatory region FlyBase REDfly_CRMs
2L	2834989	2L_2834989_SNP [dm3] 2L_2834989_SNP [dm6]	G	A	3.011e^-5	0.718	NON_SYNONYMOUS_CODING CG3119
2R	17326783	2R_17326783_SNP [dm3] 2R_21439278_SNP [dm6]	C	A	3.023e^-5	0.718	INTRON Sdc
2L	14976396	2L_14976396_SNP [dm3] 2L_14976396_SNP [dm6]	T	G	3.082e^-5	0.718	INTRON mol
2R	5816832	2R_5816832_SNP [dm3] 2R_9929327_SNP [dm6]	A	G	3.113e^-5	0.718	UTR_5_PRIME Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8328995	3L_8328995_SNP [dm3] 3L_8335895_SNP [dm6]	G	T	3.133e^-5	0.718	UPSTREAM Cpr66Cb INTERGENIC
3L	16173517	3L_16173517_SNP [dm3] 3L_16180417_SNP [dm6]	T	A	3.156e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15331229	2L_15331229_SNP [dm3] 2L_15331229_SNP [dm6]	C	T	3.225e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3952232	2L_3952232_SNP [dm3] 2L_3952232_SNP [dm6]	T	C	3.232e^-5	0.718	INTRON fred
2R	17391769	2R_17391769_SNP [dm3] 2R_21504264_SNP [dm6]	T	C	3.247e^-5	0.718	INTRON MESK2	TF binding site mE1_TFBS_inv
3L	602335	3L_602335_SNP [dm3] 3L_602335_SNP [dm6]	T	G	3.266e^-5	0.718	INTRON CG13893
2R	18296428	2R_18296428_SNP [dm3] 2R_22408923_SNP [dm6]	A	T	3.313e^-5	0.718	NON_SYNONYMOUS_CODING ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3327202	2L_3327202_SNP [dm3] 2L_3327202_SNP [dm6]	A	G	3.346e^-5	0.718	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	4655797	3L_4655797_SNP [dm3] 3L_4655797_SNP [dm6]	C	G	3.384e^-5	0.718	INTRON axo
2R	16378445	2R_16378445_INS [dm3] 2R_20490940_INS [dm6]	G	AA	3.408e^-5	0.718	EXON CR44643
X	18487281	X_18487281_SNP [dm3] X_18593248_SNP [dm6]	A	T	3.482e^-5	0.718	INTERGENIC
2L	3327209	2L_3327209_SNP [dm3] 2L_3327209_SNP [dm6]	T	A	3.561e^-5	0.718	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	3.564e^-5	0.718	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
X	7502720	X_7502720_SNP [dm3] X_7608687_SNP [dm6]	T	A	3.630e^-5	0.718	UPSTREAM ct INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3111907	2R_3111907_SNP [dm3] 2R_7224402_SNP [dm6]	A	T	3.645e^-5	0.718	INTERGENIC
2R	16742494	2R_16742494_SNP [dm3] 2R_20854989_SNP [dm6]	T	C	3.661e^-5	0.718	INTERGENIC
2L	5144558	2L_5144558_SNP [dm3] 2L_5144558_SNP [dm6]	G	T	3.664e^-5	0.718	NON_SYNONYMOUS_CODING Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7289372	2L_7289372_SNP [dm3] 2L_7289372_SNP [dm6]	G	C	3.700e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18464822	2R_18464822_SNP [dm3] 2R_22577317_SNP [dm6]	G	A	3.725e^-5	0.718	INTRON dnr1
3R	6542833	3R_6542833_DEL [dm3] 3R_10717111_DEL [dm6]	CT	C	3.782e^-5	0.718	INTERGENIC
3R	6542832	3R_6542832_SNP [dm3] 3R_10717110_SNP [dm6]	T	C	3.791e^-5	0.718	INTERGENIC
2L	7523734	2L_7523734_SNP [dm3] 2L_7523734_SNP [dm6]	A	T	3.868e^-5	0.718	INTRON RapGAP1
2R	5809591	2R_5809591_SNP [dm3] 2R_9922086_SNP [dm6]	T	C	3.943e^-5	0.718	INTRON Mef2
3R	23921956	3R_23921956_SNP [dm3] 3R_28096234_SNP [dm6]	G	A	3.984e^-5	0.718	INTERGENIC
2L	10011636	2L_10011636_SNP [dm3] 2L_10011636_SNP [dm6]	G	C	4.010e^-5	0.718	SYNONYMOUS_CODING Trp1
2L	5580494	2L_5580494_SNP [dm3] 2L_5580494_SNP [dm6]	A	G	4.041e^-5	0.718	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5814960	2R_5814960_SNP [dm3] 2R_9927455_SNP [dm6]	C	T	4.074e^-5	0.718	INTRON Mef2
3L	14964960	3L_14964960_SNP [dm3] 3L_14971860_SNP [dm6]	A	G	4.116e^-5	0.718	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	15726675	3L_15726675_SNP [dm3] 3L_15733575_SNP [dm6]	G	T	4.130e^-5	0.718	INTERGENIC
3R	23961249	3R_23961249_SNP [dm3] 3R_28135527_SNP [dm6]	A	T	4.132e^-5	0.718	INTERGENIC
3L	18197270	3L_18197270_SNP [dm3] 3L_18204170_SNP [dm6]	T	A	4.144e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16094187	2R_16094187_SNP [dm3] 2R_20206682_SNP [dm6]	A	C	4.182e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13150737	3R_13150737_SNP [dm3] 3R_17325015_SNP [dm6]	C	A	4.212e^-5	0.718	INTRON beat-IIa
2R	12460845	2R_12460845_SNP [dm3] 2R_16573340_SNP [dm6]	G	T	4.216e^-5	0.718	SYNONYMOUS_CODING CG4927
2L	7289446	2L_7289446_SNP [dm3] 2L_7289446_SNP [dm6]	G	A	4.264e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7934138	2L_7934138_SNP [dm3] 2L_7934138_SNP [dm6]	C	T	4.285e^-5	0.718	INTRON Snoo
X	12246875	X_12246875_SNP [dm3] X_12352842_SNP [dm6]	T	A	4.333e^-5	0.718	INTERGENIC
3L	14964964	3L_14964964_SNP [dm3] 3L_14971864_SNP [dm6]	T	A	4.351e^-5	0.718	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	12693082	3L_12693082_SNP [dm3] 3L_12699982_SNP [dm6]	A	T	4.375e^-5	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_twi
3R	16999849	3R_16999849_SNP [dm3] 3R_21174127_SNP [dm6]	T	A	4.392e^-5	0.718	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2862457	2L_2862457_DEL [dm3] 2L_2862457_DEL [dm6]	AACCGGAGA	A	4.405e^-5	0.718	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5148635	2L_5148635_INS [dm3] 2L_5148635_INS [dm6]	A	AA	4.501e^-5	0.718	INTRON Msp300
3L	17704714	3L_17704714_SNP [dm3] 3L_17711614_SNP [dm6]	A	G	4.565e^-5	0.718	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19218458	3L_19218458_SNP [dm3] 3L_19225358_SNP [dm6]	G	A	4.710e^-5	0.718	INTRON fz2
X	16753234	X_16753234_SNP [dm3] X_16859201_SNP [dm6]	C	A	4.725e^-5	0.718	INTRON CG13003
3L	12693143	3L_12693143_SNP [dm3] 3L_12700043_SNP [dm6]	C	G	4.755e^-5	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_twi
3R	24768771	3R_24768771_SNP [dm3] 3R_28943049_SNP [dm6]	A	C	4.906e^-5	0.718	INTRON CG14521	TF binding site mE1_TFBS_chinmo
3L	15731852	3L_15731852_SNP [dm3] 3L_15738752_SNP [dm6]	A	G	4.967e^-5	0.718	INTERGENIC
2L	9232979	2L_9232979_DEL [dm3] 2L_9232979_DEL [dm6]	TTTCCTGGCGCAACGGTTCG...	T	4.999e^-5	0.718	INTRON tai
X	4621904	X_4621904_SNP [dm3] X_4727871_SNP [dm6]	G	A	5.076e^-5	0.718	SYNONYMOUS_CODING Proc-R
2L	10188836	2L_10188836_SNP [dm3] 2L_10188836_SNP [dm6]	A	G	5.100e^-5	0.718	SYNONYMOUS_CODING Sur DOWNSTREAM CG31874
3L	2872683	3L_2872683_SNP [dm3] 3L_2872683_SNP [dm6]	C	T	5.102e^-5	0.718	UTR_5_PRIME CG43444
2R	16094216	2R_16094216_SNP [dm3] 2R_20206711_SNP [dm6]	T	A	5.147e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15726664	3L_15726664_SNP [dm3] 3L_15733564_SNP [dm6]	T	C	5.185e^-5	0.718	INTERGENIC
3L	15731024	3L_15731024_SNP [dm3] 3L_15737924_SNP [dm6]	T	A	5.185e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14976414	2L_14976414_SNP [dm3] 2L_14976414_SNP [dm6]	T	C	5.192e^-5	0.718	INTRON mol
3L	4652609	3L_4652609_SNP [dm3] 3L_4652609_SNP [dm6]	C	G	5.209e^-5	0.718	INTRON axo
2R	19307981	2R_19307981_SNP [dm3] 2R_23420458_SNP [dm6]	C	T	5.211e^-5	0.718	UPSTREAM CG9812 INTERGENIC
3R	22292576	3R_22292576_SNP [dm3] 3R_26466854_SNP [dm6]	A	G	5.229e^-5	0.718	NON_SYNONYMOUS_CODING CG5455
2R	2789807	2R_2789807_INS [dm3] 2R_6902302_INS [dm6]	T	TTTTCAAAT	5.349e^-5	0.718	INTRON CG30158
2L	927506	2L_927506_SNP [dm3] 2L_927506_SNP [dm6]	C	T	5.350e^-5	0.718	INTRON CG4341
2L	9460036	2L_9460036_SNP [dm3] 2L_9460036_SNP [dm6]	A	T	5.427e^-5	0.718	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9593703	2L_9593703_SNP [dm3] 2L_9593703_SNP [dm6]	T	A	5.437e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs
X	11231417	X_11231417_SNP [dm3] X_11337384_SNP [dm6]	G	T	5.440e^-5	0.718	SYNONYMOUS_CODING Kap3
3L	18022368	3L_18022368_SNP [dm3] 3L_18029268_SNP [dm6]	T	A	5.451e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	480370	3L_480370_SNP [dm3] 3L_480370_SNP [dm6]	A	G	5.464e^-5	0.718	INTRON klar	TF binding site mE1_TFBS_cad
2R	16902434	2R_16902434_SNP [dm3] 2R_21014929_SNP [dm6]	G	C	5.510e^-5	0.718	SYNONYMOUS_CODING CG9346 DOWNSTREAM CG3295	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12460295	2R_12460295_SNP [dm3] 2R_16572790_SNP [dm6]	A	G	5.547e^-5	0.718	INTRON CG4927
2R	7046812	2R_7046812_SNP [dm3] 2R_11159307_SNP [dm6]	T	A	5.588e^-5	0.718	INTRON CG13229 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9988508	X_9988508_SNP [dm3] X_10094475_SNP [dm6]	G	C	5.623e^-5	0.718	INTRON RhoU
3R	23961241	3R_23961241_DEL [dm3] 3R_28135519_DEL [dm6]	TT	T	5.631e^-5	0.718	INTERGENIC
3L	16852787	3L_16852787_SNP [dm3] 3L_16859687_SNP [dm6]	A	T	5.700e^-5	0.718	NON_SYNONYMOUS_CODING sinah UPSTREAM CG13029 DOWNSTREAM sina INTRON Rh4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14245542	2L_14245542_SNP [dm3] 2L_14245542_SNP [dm6]	G	A	5.741e^-5	0.718	INTERGENIC
3R	13906087	3R_13906087_SNP [dm3] 3R_18080365_SNP [dm6]	T	C	5.756e^-5	0.718	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13508719	2R_13508719_SNP [dm3] 2R_17621214_SNP [dm6]	A	G	5.772e^-5	0.718	INTRON CG10936
2L	8180684	2L_8180684_SNP [dm3] 2L_8180684_SNP [dm6]	G	T	5.773e^-5	0.718	NON_SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
3L	18008901	3L_18008901_SNP [dm3] 3L_18015801_SNP [dm6]	A	T	5.832e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4657935	3L_4657935_SNP [dm3] 3L_4657935_SNP [dm6]	A	C	5.864e^-5	0.718	INTRON axo	TF binding site mE1_TFBS_inv
3R	20400886	3R_20400886_SNP [dm3] 3R_24575164_SNP [dm6]	C	A	5.875e^-5	0.718	INTRON CG13624
3L	8690271	3L_8690271_SNP [dm3] 3L_8697171_SNP [dm6]	T	A	5.903e^-5	0.718	INTERGENIC
3L	20530165	3L_20530165_SNP [dm3] 3L_20537065_SNP [dm6]	C	T	5.906e^-5	0.718	INTRON Rcd2
X	14573065	X_14573065_SNP [dm3] X_14679032_SNP [dm6]	C	T	5.907e^-5	0.718	UPSTREAM CG5321 INTERGENIC
X	10980717	X_10980717_SNP [dm3] X_11086684_SNP [dm6]	A	G	6.116e^-5	0.718	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	18022389	3L_18022389_SNP [dm3] 3L_18029289_SNP [dm6]	T	G	6.132e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20400910	3R_20400910_INS [dm3] 3R_24575188_INS [dm6]	C	CT	6.162e^-5	0.718	INTRON CG13624
3R	6505855	3R_6505855_SNP [dm3] 3R_10680133_SNP [dm6]	T	C	6.195e^-5	0.718	INTRON CG14688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19933156	3L_19933156_SNP [dm3] 3L_19940056_SNP [dm6]	T	G	6.211e^-5	0.718	INTRON Ac76E
2R	17001273	2R_17001273_SNP [dm3] 2R_21113768_SNP [dm6]	C	A	6.243e^-5	0.718	INTRON ktub
3L	1803417	3L_1803417_SNP [dm3] 3L_1803417_SNP [dm6]	A	G	6.269e^-5	0.718	UPSTREAM JTBR INTRON CG42676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9112523	3R_9112523_SNP [dm3] 3R_13286801_SNP [dm6]	A	G	6.306e^-5	0.718	UPSTREAM CG15888 DOWNSTREAM CG15887 INTERGENIC	TF binding site mE1_TFBS_cad
X	16287121	X_16287121_SNP [dm3] X_16393088_SNP [dm6]	C	T	6.419e^-5	0.718	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14573070	X_14573070_SNP [dm3] X_14679037_SNP [dm6]	T	C	6.484e^-5	0.718	UPSTREAM CG5321 INTERGENIC
3L	18022406	3L_18022406_SNP [dm3] 3L_18029306_SNP [dm6]	A	T	6.496e^-5	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3135770	2R_3135770_SNP [dm3] 2R_7248265_SNP [dm6]	A	T	6.499e^-5	0.718	UPSTREAM Gadd45 INTERGENIC
3L	14964931	3L_14964931_INS [dm3] 3L_14971831_INS [dm6]	A	AA	6.520e^-5	0.718	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	23935303	3R_23935303_SNP [dm3] 3R_28109581_SNP [dm6]	C	A	6.523e^-5	0.718	INTERGENIC
2L	13708222	2L_13708222_SNP [dm3] 2L_13708222_SNP [dm6]	G	A	6.580e^-5	0.718	UTR_5_PRIME CG7311 INTRON CG31814
X	3356181	X_3356181_SNP [dm3] X_3462148_SNP [dm6]	G	A	6.660e^-5	0.718	NON_SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
3L	14468483	3L_14468483_SNP [dm3] 3L_14475383_SNP [dm6]	A	G	6.687e^-5	0.718	INTRON bbg
2R	16094145	2R_16094145_SNP [dm3] 2R_20206640_SNP [dm6]	G	A	6.746e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14803983	2R_14803983_SNP [dm3] 2R_18916478_SNP [dm6]	T	G	6.778e^-5	0.718	INTRON sano
3L	621518	3L_621518_SNP [dm3] 3L_621518_SNP [dm6]	C	A	6.779e^-5	0.718	INTRON CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	18278477	2R_18278477_SNP [dm3] 2R_22390972_SNP [dm6]	A	G	6.797e^-5	0.718	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6516957	3R_6516957_SNP [dm3] 3R_10691235_SNP [dm6]	C	G	6.836e^-5	0.718	DOWNSTREAM Skeletor INTRON Skeletor
2L	17021969	2L_17021969_SNP [dm3] 2L_17021969_SNP [dm6]	G	T	6.869e^-5	0.718	INTERGENIC
2L	14248214	2L_14248214_SNP [dm3] 2L_14248214_SNP [dm6]	C	G	6.877e^-5	0.718	INTERGENIC
2L	7289359	2L_7289359_SNP [dm3] 2L_7289359_SNP [dm6]	G	T	6.882e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18435698	2R_18435698_SNP [dm3] 2R_22548193_SNP [dm6]	G	A	6.901e^-5	0.718	INTRON px
2L	11034771	2L_11034771_SNP [dm3] 2L_11034771_SNP [dm6]	A	C	6.909e^-5	0.718	UPSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2R	12460291	2R_12460291_SNP [dm3] 2R_16572786_SNP [dm6]	T	G	6.942e^-5	0.718	INTRON CG4927
3R	16349785	3R_16349785_SNP [dm3] 3R_20524063_SNP [dm6]	G	A	7.046e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16902262	2R_16902262_SNP [dm3] 2R_21014757_SNP [dm6]	T	A	7.141e^-5	0.718	DOWNSTREAM CG3295 INTRON CG9346
X	1625672	X_1625672_SNP [dm3] X_1731639_SNP [dm6]	C	A	7.194e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19471446	2L_19471446_SNP [dm3] 2L_19471446_SNP [dm6]	C	T	7.215e^-5	0.718	UPSTREAM CR45723 EXON CR43839
3L	15730744	3L_15730744_SNP [dm3] 3L_15737644_SNP [dm6]	T	A	7.228e^-5	0.718	INTERGENIC
2L	5689225	2L_5689225_SNP [dm3] 2L_5689225_SNP [dm6]	G	C	7.248e^-5	0.718	INTERGENIC
2R	18296446	2R_18296446_SNP [dm3] 2R_22408941_SNP [dm6]	A	T	7.287e^-5	0.718	SYNONYMOUS_CODING ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12455568	2R_12455568_SNP [dm3] 2R_16568063_SNP [dm6]	A	C	7.335e^-5	0.718	INTRON CG4945
3L	14051388	3L_14051388_SNP [dm3] 3L_14058288_SNP [dm6]	C	G	7.342e^-5	0.718	INTRON CG32138
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	7.385e^-5	0.718	UPSTREAM CG3906 INTERGENIC
2L	19884548	2L_19884548_SNP [dm3] 2L_19884548_SNP [dm6]	T	A	7.469e^-5	0.718	INTRON sick
3R	6731722	3R_6731722_SNP [dm3] 3R_10906000_SNP [dm6]	G	T	7.547e^-5	0.718	INTERGENIC
X	14798232	X_14798232_SNP [dm3] X_14904199_SNP [dm6]	G	A	7.562e^-5	0.718	SYNONYMOUS_CODING CG9512 INTRON Flo2
2L	8283163	2L_8283163_SNP [dm3] 2L_8283163_SNP [dm6]	G	T	7.569e^-5	0.718	INTRON Btk29A
X	15404467	X_15404467_SNP [dm3] X_15510434_SNP [dm6]	G	A	7.703e^-5	0.718	UTR_3_PRIME Gmap DOWNSTREAM mir-12 & 1 other	TF binding site mE1_TFBS_cad
3R	20054116	3R_20054116_SNP [dm3] 3R_24228394_SNP [dm6]	C	T	7.733e^-5	0.718	UTR_3_PRIME CG13609 & 1 other UPSTREAM Acp95EF DOWNSTREAM Spase22-23
2L	2347582	2L_2347582_SNP [dm3] 2L_2347582_SNP [dm6]	T	C	7.879e^-5	0.718	INTRON CG9967 & 1 other
2R	16094174	2R_16094174_SNP [dm3] 2R_20206669_SNP [dm6]	T	A	7.883e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16094176	2R_16094176_SNP [dm3] 2R_20206671_SNP [dm6]	C	A	7.883e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16094182	2R_16094182_SNP [dm3] 2R_20206677_SNP [dm6]	G	T	7.883e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16094230	2R_16094230_SNP [dm3] 2R_20206725_SNP [dm6]	G	T	7.885e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7603097	3L_7603097_SNP [dm3] 3L_7609997_SNP [dm6]	T	A	7.902e^-5	0.718	INTRON CG33275
2R	14937533	2R_14937533_SNP [dm3] 2R_19050028_SNP [dm6]	C	G	7.924e^-5	0.718	INTERGENIC
2R	18321293	2R_18321293_SNP [dm3] 2R_22433788_SNP [dm6]	T	A	7.930e^-5	0.718	INTERGENIC
2L	6873189	2L_6873189_SNP [dm3] 2L_6873189_SNP [dm6]	C	T	7.932e^-5	0.718	UPSTREAM CR44915 EXON CR44914
2L	6873588	2L_6873588_SNP [dm3] 2L_6873588_SNP [dm6]	G	T	7.932e^-5	0.718	INTRON CR44914
X	3356174	X_3356174_SNP [dm3] X_3462141_SNP [dm6]	A	T	7.943e^-5	0.718	NON_SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
2L	14976827	2L_14976827_SNP [dm3] 2L_14976827_SNP [dm6]	G	A	7.991e^-5	0.718	SYNONYMOUS_CODING mol
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	7.994e^-5	0.718	INTERGENIC
2R	18051537	2R_18051537_SNP [dm3] 2R_22164032_SNP [dm6]	T	G	7.995e^-5	0.718	NON_SYNONYMOUS_CODING CG34206 INTRON a
2L	7916351	2L_7916351_SNP [dm3] 2L_7916351_SNP [dm6]	T	C	8.042e^-5	0.718	INTRON Snoo
3R	13900721	3R_13900721_SNP [dm3] 3R_18074999_SNP [dm6]	T	A	8.051e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16999780	3R_16999780_SNP [dm3] 3R_21174058_SNP [dm6]	T	C	8.062e^-5	0.718	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14036339	3L_14036339_SNP [dm3] 3L_14043239_SNP [dm6]	T	C	8.135e^-5	0.718	UTR_3_PRIME Hsc70Cb DOWNSTREAM blue	TF binding site mE1_TFBS_cad
3R	3053565	3R_3053565_SNP [dm3] 3R_7227843_SNP [dm6]	G	T	8.204e^-5	0.718	INTRON CG14608
2L	1361338	2L_1361338_SNP [dm3] 2L_1361338_SNP [dm6]	G	A	8.219e^-5	0.718	INTRON NLaz	TF binding site mE1_TFBS_cad
2R	6650060	2R_6650060_SNP [dm3] 2R_10762555_SNP [dm6]	T	A	8.269e^-5	0.718	DOWNSTREAM CR43605 INTRON CG33144
2R	10854783	2R_10854783_SNP [dm3] 2R_14967278_SNP [dm6]	A	T	8.314e^-5	0.718	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7289392	2L_7289392_SNP [dm3] 2L_7289392_SNP [dm6]	T	C	8.451e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16094177	2R_16094177_SNP [dm3] 2R_20206672_SNP [dm6]	T	C	8.469e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20052804	3R_20052804_SNP [dm3] 3R_24227082_SNP [dm6]	C	T	8.486e^-5	0.718	START_GAINED CG13609 UTR_5_PRIME CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	10842670	2R_10842670_SNP [dm3] 2R_14955165_SNP [dm6]	T	A	8.515e^-5	0.718	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16876945	3L_16876945_SNP [dm3] 3L_16883845_SNP [dm6]	G	A	8.560e^-5	0.718	INTRON Lmpt
3R	21376959	3R_21376959_SNP [dm3] 3R_25551237_SNP [dm6]	T	G	8.655e^-5	0.718	INTRON msi
2R	19018941	2R_19018941_SNP [dm3] 2R_23131418_SNP [dm6]	T	A	8.661e^-5	0.718	INTERGENIC
2R	16094199	2R_16094199_SNP [dm3] 2R_20206694_SNP [dm6]	G	C	8.782e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17014546	2R_17014546_SNP [dm3] 2R_21127041_SNP [dm6]	G	C	8.828e^-5	0.718	START_GAINED CG4050 UTR_5_PRIME CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	17014548	2R_17014548_SNP [dm3] 2R_21127043_SNP [dm6]	A	G	8.828e^-5	0.718	UTR_5_PRIME CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	15811757	X_15811757_SNP [dm3] X_15917724_SNP [dm6]	C	T	8.837e^-5	0.718	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18928330	2R_18928330_SNP [dm3] 2R_23040807_SNP [dm6]	C	T	8.860e^-5	0.718	INTRON twi & 1 other
3L	12693093	3L_12693093_SNP [dm3] 3L_12699993_SNP [dm6]	A	G	8.899e^-5	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_twi
3L	12693101	3L_12693101_SNP [dm3] 3L_12700001_SNP [dm6]	T	A	8.963e^-5	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_twi
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	9.108e^-5	0.718	INTERGENIC
X	19382779	X_19382779_SNP [dm3] X_19488746_SNP [dm6]	C	G	9.116e^-5	0.718	SYNONYMOUS_CODING pcm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	16094183	2R_16094183_SNP [dm3] 2R_20206678_SNP [dm6]	A	C	9.215e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2834264	2L_2834264_SNP [dm3] 2L_2834264_SNP [dm6]	T	C	9.237e^-5	0.718	DOWNSTREAM CG3119 INTERGENIC
3L	18197271	3L_18197271_SNP [dm3] 3L_18204171_SNP [dm6]	G	A	9.296e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15673303	3R_15673303_SNP [dm3] 3R_19847581_SNP [dm6]	C	T	9.298e^-5	0.718	SYNONYMOUS_CODING CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5862060	2R_5862060_SNP [dm3] 2R_9974555_SNP [dm6]	G	A	9.323e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17082008	3R_17082008_SNP [dm3] 3R_21256286_SNP [dm6]	A	T	9.333e^-5	0.718	INTRON ETHR
X	18813488	X_18813488_SNP [dm3] X_18919455_SNP [dm6]	T	A	9.345e^-5	0.718	INTERGENIC
2L	5148671	2L_5148671_SNP [dm3] 2L_5148671_SNP [dm6]	A	T	9.377e^-5	0.718	INTRON Msp300
X	1625864	X_1625864_SNP [dm3] X_1731831_SNP [dm6]	A	T	9.390e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7517554	2L_7517554_SNP [dm3] 2L_7517554_SNP [dm6]	T	C	9.471e^-5	0.718	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9476357	3R_9476357_SNP [dm3] 3R_13650635_SNP [dm6]	T	G	9.492e^-5	0.718	INTRON rin
2L	13015606	2L_13015606_SNP [dm3] 2L_13015606_SNP [dm6]	A	G	9.548e^-5	0.718	INTRON CG9934
3R	9898116	3R_9898116_SNP [dm3] 3R_14072394_SNP [dm6]	C	G	9.651e^-5	0.718	INTRON foxo
2R	16086957	2R_16086957_SNP [dm3] 2R_20199452_SNP [dm6]	C	A	9.677e^-5	0.718	INTERGENIC
3L	4029703	3L_4029703_SNP [dm3] 3L_4029703_SNP [dm6]	T	A	9.739e^-5	0.718	SYNONYMOUS_CODING Gr64b START_GAINED Gr64c UTR_5_PRIME Gr64c UPSTREAM Gr64c
2R	18782014	2R_18782014_SNP [dm3] 2R_22894491_SNP [dm6]	T	C	9.854e^-5	0.718	SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23611015	3R_23611015_SNP [dm3] 3R_27785293_SNP [dm6]	C	A	9.854e^-5	0.718	INTRON CG34353
3L	4241831	3L_4241831_INS [dm3] 3L_4241831_INS [dm6]	C	CTAAAGAATACTTTTAACTT...	9.933e^-5	0.718	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18197224	3L_18197224_SNP [dm3] 3L_18204124_SNP [dm6]	G	T	9.952e^-5	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	6725787	3R_6725787_SNP [dm3] 3R_10900065_SNP [dm6]	A	C	1.003e^-4	0.718	INTERGENIC
3L	3733318	3L_3733318_SNP [dm3] 3L_3733318_SNP [dm6]	T	A	1.008e^-4	0.718	INTRON CG32264
3L	16788561	3L_16788561_SNP [dm3] 3L_16795461_SNP [dm6]	C	T	1.010e^-4	0.718	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad
2L	14976411	2L_14976411_SNP [dm3] 2L_14976411_SNP [dm6]	T	C	1.012e^-4	0.718	INTRON mol
2R	16407287	2R_16407287_DEL [dm3] 2R_20519782_DEL [dm6]	AA	A	1.015e^-4	0.718	INTERGENIC
3L	4657711	3L_4657711_SNP [dm3] 3L_4657711_SNP [dm6]	A	G	1.020e^-4	0.718	INTRON axo	TF binding site mE1_TFBS_inv
3L	7751753	3L_7751753_SNP [dm3] 3L_7758653_SNP [dm6]	A	G	1.024e^-4	0.718	INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14110583	3L_14110583_SNP [dm3] 3L_14117483_SNP [dm6]	C	G	1.026e^-4	0.718	INTRON Sox21b
3L	18022453	3L_18022453_SNP [dm3] 3L_18029353_SNP [dm6]	T	A	1.028e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10406974	3R_10406974_SNP [dm3] 3R_14581252_SNP [dm6]	A	G	1.034e^-4	0.718	INTRON stumps
3L	790424	3L_790424_SNP [dm3] 3L_790424_SNP [dm6]	G	T	1.039e^-4	0.718	INTERGENIC
X	3356163	X_3356163_SNP [dm3] X_3462130_SNP [dm6]	T	G	1.046e^-4	0.718	NON_SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
3L	18022352	3L_18022352_SNP [dm3] 3L_18029252_SNP [dm6]	G	T	1.052e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5097495	2L_5097495_SNP [dm3] 2L_5097495_SNP [dm6]	T	C	1.052e^-4	0.718	INTRON CG4230	TF binding site BDTNP1_TFBS_dl
2R	3093581	2R_3093581_SNP [dm3] 2R_7206076_SNP [dm6]	G	A	1.055e^-4	0.718	INTRON pk
X	10980970	X_10980970_SNP [dm3] X_11086937_SNP [dm6]	G	A	1.068e^-4	0.718	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs
3R	20052841	3R_20052841_SNP [dm3] 3R_24227119_SNP [dm6]	G	A	1.072e^-4	0.718	UTR_5_PRIME CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	22152330	X_22152330_SNP [dm3] X_22750494_SNP [dm6]	C	T	1.074e^-4	0.718	INTRON CR44997
2L	5689215	2L_5689215_SNP [dm3] 2L_5689215_SNP [dm6]	C	G	1.079e^-4	0.718	INTERGENIC
2R	18265111	2R_18265111_SNP [dm3] 2R_22377606_SNP [dm6]	G	A	1.082e^-4	0.718	DOWNSTREAM CR45327 INTRON Rtf1
2L	3876859	2L_3876859_SNP [dm3] 2L_3876859_SNP [dm6]	G	C	1.082e^-4	0.718	INTRON capu
2L	14976482	2L_14976482_SNP [dm3] 2L_14976482_SNP [dm6]	G	C	1.092e^-4	0.718	INTRON mol
2L	3227596	2L_3227596_SNP [dm3] 2L_3227596_SNP [dm6]	T	C	1.094e^-4	0.718	INTERGENIC
X	6944588	X_6944588_INS [dm3] X_7050555_INS [dm6]	T	TTT	1.094e^-4	0.718	DOWNSTREAM nullo INTRON CG12541
3R	6006243	3R_6006243_SNP [dm3] 3R_10180521_SNP [dm6]	A	G	1.114e^-4	0.718	INTRON CG12814
X	7978528	X_7978528_SNP [dm3] X_8084495_SNP [dm6]	G	A	1.118e^-4	0.718	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
2R	14781891	2R_14781891_SNP [dm3] 2R_18894386_SNP [dm6]	T	C	1.125e^-4	0.718	INTRON sano
3L	13305033	3L_13305033_SNP [dm3] 3L_13311933_SNP [dm6]	A	G	1.125e^-4	0.718	INTERGENIC
3L	18197938	3L_18197938_SNP [dm3] 3L_18204838_SNP [dm6]	A	C	1.126e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15877033	3L_15877033_SNP [dm3] 3L_15883933_SNP [dm6]	A	T	1.132e^-4	0.718	DOWNSTREAM CR44050 INTRON pHCl
X	10980971	X_10980971_SNP [dm3] X_11086938_SNP [dm6]	A	G	1.132e^-4	0.718	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs
2L	11208745	2L_11208745_SNP [dm3] 2L_11208745_SNP [dm6]	C	T	1.134e^-4	0.718	INTERGENIC
X	6735492	X_6735492_SNP [dm3] X_6841459_SNP [dm6]	G	C	1.141e^-4	0.718	INTRON CG14435
3L	9829558	3L_9829558_SNP [dm3] 3L_9836458_SNP [dm6]	A	G	1.148e^-4	0.718	SYNONYMOUS_CODING I-2 DOWNSTREAM Cdk8 INTRON I-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6528243	3R_6528243_SNP [dm3] 3R_10702521_SNP [dm6]	C	A	1.150e^-4	0.718	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
2L	19816318	2L_19816318_SNP [dm3] 2L_19816318_SNP [dm6]	G	A	1.166e^-4	0.718	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20961997	X_20961997_SNP [dm3] X_21090970_SNP [dm6]	C	G	1.168e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3187592	2L_3187592_SNP [dm3] 2L_3187592_SNP [dm6]	T	G	1.175e^-4	0.718	INTRON CG34393	TF binding site mE1_TFBS_inv
3L	16798235	3L_16798235_SNP [dm3] 3L_16805135_SNP [dm6]	A	T	1.176e^-4	0.718	UTR_5_PRIME nudC INTRON CG9674	TF binding site mE1_TFBS_cad
3L	17709893	3L_17709893_SNP [dm3] 3L_17716793_SNP [dm6]	T	A	1.180e^-4	0.718	INTRON Ccn
2R	19505735	2R_19505735_SNP [dm3] 2R_23618212_SNP [dm6]	A	C	1.182e^-4	0.718	INTERGENIC
2R	19505731	2R_19505731_SNP [dm3] 2R_23618208_SNP [dm6]	A	G	1.183e^-4	0.718	INTERGENIC
2R	19257729	2R_19257729_SNP [dm3] 2R_23370206_SNP [dm6]	G	T	1.185e^-4	0.718	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_sens
2L	4284025	2L_4284025_DEL [dm3] 2L_4284025_DEL [dm6]	CGTTGAAAATATTA...	C	1.189e^-4	0.718	UPSTREAM tutl INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	8023848	3L_8023848_SNP [dm3] 3L_8030748_SNP [dm6]	C	A	1.192e^-4	0.718	INTRON nmo
3L	16171712	3L_16171712_SNP [dm3] 3L_16178612_SNP [dm6]	G	C	1.193e^-4	0.718	UPSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6872001	2L_6872001_SNP [dm3] 2L_6872001_SNP [dm6]	C	G	1.198e^-4	0.718	UPSTREAM CR44914 INTRON CR44915
2R	11139849	2R_11139849_SNP [dm3] 2R_15252344_SNP [dm6]	T	A	1.202e^-4	0.718	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	15724330	3L_15724330_SNP [dm3] 3L_15731230_SNP [dm6]	A	T	1.208e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18022443	3L_18022443_DEL [dm3] 3L_18029343_DEL [dm6]	AA	A	1.209e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17278880	X_17278880_SNP [dm3] X_17384847_SNP [dm6]	G	A	1.210e^-4	0.718	INTERGENIC
2L	14340774	2L_14340774_SNP [dm3] 2L_14340774_SNP [dm6]	A	G	1.210e^-4	0.718	DOWNSTREAM CG15286 INTRON CG33090
3R	21576907	3R_21576907_SNP [dm3] 3R_25751185_SNP [dm6]	A	G	1.214e^-4	0.718	INTRON LpR1
2L	3243095	2L_3243095_SNP [dm3] 2L_3243095_SNP [dm6]	C	G	1.216e^-4	0.718	INTERGENIC
2R	18981933	2R_18981933_SNP [dm3] 2R_23094410_SNP [dm6]	C	G	1.218e^-4	0.718	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7915990	2L_7915990_SNP [dm3] 2L_7915990_SNP [dm6]	G	A	1.219e^-4	0.718	INTRON Snoo
2R	12455621	2R_12455621_SNP [dm3] 2R_16568116_SNP [dm6]	C	G	1.219e^-4	0.718	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	12455595	2R_12455595_SNP [dm3] 2R_16568090_SNP [dm6]	A	G	1.227e^-4	0.718	INTRON CG4945	TF binding site mE1_TFBS_cad
3R	22746594	3R_22746594_SNP [dm3] 3R_26920872_SNP [dm6]	G	C	1.237e^-4	0.718	INTRON sda
2L	19191266	2L_19191266_SNP [dm3] 2L_19191266_SNP [dm6]	C	A	1.241e^-4	0.718	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20053601	3R_20053601_SNP [dm3] 3R_24227879_SNP [dm6]	C	G	1.246e^-4	0.718	SYNONYMOUS_CODING CG13609 UPSTREAM Spps DOWNSTREAM Spase22-23	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	21280171	X_21280171_DEL [dm3] X_21409144_DEL [dm6]	TCTGTCTC	T	1.247e^-4	0.718	DOWNSTREAM CR45003 INTERGENIC
2L	7997297	2L_7997297_SNP [dm3] 2L_7997297_SNP [dm6]	T	C	1.257e^-4	0.718	DOWNSTREAM CR44996 INTRON CG7227
2L	9428665	2L_9428665_SNP [dm3] 2L_9428665_SNP [dm6]	A	T	1.257e^-4	0.718	UTR_3_PRIME CG42847 DOWNSTREAM FucTB & 1 other
3R	17168831	3R_17168831_SNP [dm3] 3R_21343109_SNP [dm6]	G	A	1.260e^-4	0.718	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4241834	3L_4241834_INS [dm3] 3L_4241834_INS [dm6]	A	AAGGGCAATTGAGATAAATT...	1.282e^-4	0.718	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1626131	2L_1626131_SNP [dm3] 2L_1626131_SNP [dm6]	G	A	1.285e^-4	0.718	UPSTREAM CR44603 INTERGENIC
2L	10214582	2L_10214582_SNP [dm3] 2L_10214582_SNP [dm6]	T	C	1.287e^-4	0.718	SYNONYMOUS_CODING Npc1a DOWNSTREAM CG4901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7175956	2R_7175956_SNP [dm3] 2R_11288451_SNP [dm6]	A	T	1.288e^-4	0.718	NON_SYNONYMOUS_CODING fbl6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16565142	3L_16565142_SNP [dm3] 3L_16572042_SNP [dm6]	G	A	1.289e^-4	0.718	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	687744	3L_687744_SNP [dm3] 3L_687744_SNP [dm6]	T	G	1.294e^-4	0.718	DOWNSTREAM CG32483 INTRON CG3344
2R	16219223	2R_16219223_SNP [dm3] 2R_20331718_SNP [dm6]	T	C	1.295e^-4	0.718	DOWNSTREAM CG8929 INTERGENIC
3L	6788579	3L_6788579_SNP [dm3] 3L_6795479_SNP [dm6]	T	C	1.296e^-4	0.718	DOWNSTREAM vvl INTERGENIC
3R	19774668	3R_19774668_SNP [dm3] 3R_23948946_SNP [dm6]	G	A	1.298e^-4	0.718	UPSTREAM CG12268 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5611265	X_5611265_SNP [dm3] X_5717232_SNP [dm6]	T	C	1.303e^-4	0.718	INTRON CG33080
X	7117522	X_7117522_SNP [dm3] X_7223489_SNP [dm6]	T	A	1.305e^-4	0.718	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da
3R	3421426	3R_3421426_SNP [dm3] 3R_7595704_SNP [dm6]	G	C	1.309e^-4	0.718	INTRON CG34127
3R	19224873	3R_19224873_SNP [dm3] 3R_23399151_SNP [dm6]	T	G	1.316e^-4	0.718	DOWNSTREAM CR44323 INTERGENIC
3L	18019333	3L_18019333_SNP [dm3] 3L_18026233_SNP [dm6]	C	T	1.319e^-4	0.718	INTRON Eip75B
2R	13508428	2R_13508428_SNP [dm3] 2R_17620923_SNP [dm6]	C	G	1.327e^-4	0.718	INTRON CG10936
2R	19611664	2R_19611664_SNP [dm3] 2R_23724141_SNP [dm6]	G	A	1.330e^-4	0.718	INTRON Sesn
3R	9730478	3R_9730478_SNP [dm3] 3R_13904756_SNP [dm6]	C	T	1.334e^-4	0.718	DOWNSTREAM ems INTERGENIC
3L	17365967	3L_17365967_SNP [dm3] 3L_17372867_SNP [dm6]	A	C	1.338e^-4	0.718	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18335984	2R_18335984_SNP [dm3] 2R_22448479_SNP [dm6]	T	C	1.340e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14187859	3L_14187859_SNP [dm3] 3L_14194759_SNP [dm6]	T	G	1.346e^-4	0.718	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14498957	3L_14498957_SNP [dm3] 3L_14505857_SNP [dm6]	A	T	1.346e^-4	0.718	INTRON bbg
3L	18030124	3L_18030124_SNP [dm3] 3L_18037024_SNP [dm6]	A	C	1.347e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5788060	3R_5788060_SNP [dm3] 3R_9962338_SNP [dm6]	G	A	1.352e^-4	0.718	INTRON Glut4EF
2L	14976483	2L_14976483_SNP [dm3] 2L_14976483_SNP [dm6]	C	G	1.352e^-4	0.718	INTRON mol
2L	19884544	2L_19884544_SNP [dm3] 2L_19884544_SNP [dm6]	T	G	1.356e^-4	0.718	INTRON sick
2L	14976392	2L_14976392_SNP [dm3] 2L_14976392_SNP [dm6]	A	C	1.358e^-4	0.718	INTRON mol
2R	10855005	2R_10855005_SNP [dm3] 2R_14967500_SNP [dm6]	G	A	1.360e^-4	0.718	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14051137	3L_14051137_SNP [dm3] 3L_14058037_SNP [dm6]	G	A	1.367e^-4	0.718	INTRON CG32138
3R	26633750	3R_26633750_SNP [dm3] 3R_30808028_SNP [dm6]	G	T	1.370e^-4	0.718	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16076215	3L_16076215_SNP [dm3] 3L_16083115_SNP [dm6]	A	G	1.371e^-4	0.718	UPSTREAM CG13075 INTRON CG33258
2R	13808587	2R_13808587_SNP [dm3] 2R_17921082_SNP [dm6]	C	T	1.371e^-4	0.718	INTRON Elk
X	17923393	X_17923393_SNP [dm3] X_18029360_SNP [dm6]	G	T	1.377e^-4	0.718	INTRON Sh
2L	11347919	2L_11347919_SNP [dm3] 2L_11347919_SNP [dm6]	C	T	1.381e^-4	0.718	INTERGENIC
2R	18255032	2R_18255032_SNP [dm3] 2R_22367527_SNP [dm6]	T	G	1.385e^-4	0.718	INTRON Liprin-gamma
2L	3227633	2L_3227633_SNP [dm3] 2L_3227633_SNP [dm6]	A	G	1.392e^-4	0.718	INTERGENIC
2R	18265113	2R_18265113_SNP [dm3] 2R_22377608_SNP [dm6]	A	T	1.395e^-4	0.718	DOWNSTREAM CR45327 INTRON Rtf1
2L	8267213	2L_8267213_SNP [dm3] 2L_8267213_SNP [dm6]	C	T	1.397e^-4	0.718	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	16796843	3L_16796843_SNP [dm3] 3L_16803743_SNP [dm6]	G	T	1.398e^-4	0.718	INTRON CG9674	TF binding site mE1_TFBS_cad
3L	14043163	3L_14043163_SNP [dm3] 3L_14050063_SNP [dm6]	T	A	1.408e^-4	0.718	UPSTREAM blue INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11094804	2L_11094804_SNP [dm3] 2L_11094804_SNP [dm6]	G	A	1.410e^-4	0.718	SYNONYMOUS_CODING CG4705 DOWNSTREAM Ge-1
2L	15331475	2L_15331475_SNP [dm3] 2L_15331475_SNP [dm6]	C	T	1.410e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15904615	2L_15904615_SNP [dm3] 2L_15904615_SNP [dm6]	T	C	1.416e^-4	0.718	DOWNSTREAM beat-Ib INTERGENIC
3R	22291932	3R_22291932_SNP [dm3] 3R_26466210_SNP [dm6]	G	C	1.416e^-4	0.718	INTRON CG5455
3L	7731403	3L_7731403_SNP [dm3] 3L_7738303_SNP [dm6]	T	G	1.416e^-4	0.718	INTRON CG32373 & 1 other
3R	1245101	3R_1245101_SNP [dm3] 3R_5419379_SNP [dm6]	A	T	1.422e^-4	0.718	INTRON CG14669
3L	5429047	3L_5429047_SNP [dm3] 3L_5435947_SNP [dm6]	T	C	1.427e^-4	0.718	UPSTREAM CG34391 INTRON CG34391
3L	17364939	3L_17364939_SNP [dm3] 3L_17371839_SNP [dm6]	A	G	1.428e^-4	0.718	SPLICE_SITE_REGION Cad74A INTRON Cad74A
2R	18782013	2R_18782013_SNP [dm3] 2R_22894490_SNP [dm6]	T	G	1.429e^-4	0.718	NON_SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16291670	2R_16291670_SNP [dm3] 2R_20404165_SNP [dm6]	A	C	1.430e^-4	0.718	INTERGENIC
3L	12028143	3L_12028143_SNP [dm3] 3L_12035043_SNP [dm6]	T	C	1.431e^-4	0.718	INTRON rols	TF binding site BDTNP1_TFBS_twi
2R	11080349	2R_11080349_SNP [dm3] 2R_15192844_SNP [dm6]	T	C	1.436e^-4	0.718	SYNONYMOUS_CODING Sfp51E
3L	18197276	3L_18197276_SNP [dm3] 3L_18204176_SNP [dm6]	G	T	1.437e^-4	0.718	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6893756	2L_6893756_SNP [dm3] 2L_6893756_SNP [dm6]	C	T	1.438e^-4	0.718	INTRON Nlg2
2R	17000757	2R_17000757_INS [dm3] 2R_21113252_INS [dm6]	A	AA	1.446e^-4	0.718	INTRON ktub
2R	10845862	2R_10845862_SNP [dm3] 2R_14958357_SNP [dm6]	T	C	1.448e^-4	0.718	START_GAINED aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl
X	19668510	X_19668510_SNP [dm3] X_19774477_SNP [dm6]	A	G	1.452e^-4	0.718	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20023152	2L_20023152_SNP [dm3] 2L_20023152_SNP [dm6]	A	G	1.452e^-4	0.718	INTERGENIC
2R	16915909	2R_16915909_SNP [dm3] 2R_21028404_SNP [dm6]	A	C	1.452e^-4	0.718	DOWNSTREAM CR45148 INTERGENIC
2R	17015872	2R_17015872_SNP [dm3] 2R_21128367_SNP [dm6]	A	T	1.457e^-4	0.718	UPSTREAM mago & 1 other INTRON CG4050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13416953	2L_13416953_SNP [dm3] 2L_13416953_SNP [dm6]	A	T	1.457e^-4	0.718	INTRON CG43850 & 1 other
3L	18022354	3L_18022354_SNP [dm3] 3L_18029254_SNP [dm6]	G	T	1.460e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9275764	X_9275764_SNP [dm3] X_9381731_SNP [dm6]	G	A	1.460e^-4	0.718	INTRON mgl
2R	11448928	2R_11448928_SNP [dm3] 2R_15561423_SNP [dm6]	G	A	1.469e^-4	0.718	SPLICE_SITE_REGION CG12963 INTRON CG12963
3R	22298935	3R_22298935_SNP [dm3] 3R_26473213_SNP [dm6]	C	T	1.476e^-4	0.718	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo
X	6174789	X_6174789_SNP [dm3] X_6280756_SNP [dm6]	G	A	1.481e^-4	0.718	UPSTREAM CR32745 DOWNSTREAM CR45530 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17765173	2R_17765173_SNP [dm3] 2R_21877668_SNP [dm6]	G	A	1.481e^-4	0.718	INTRON Fili	TF binding site mE1_TFBS_cnc
2L	5144662	2L_5144662_SNP [dm3] 2L_5144662_SNP [dm6]	A	G	1.490e^-4	0.718	SYNONYMOUS_CODING Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8177803	2L_8177803_SNP [dm3] 2L_8177803_SNP [dm6]	C	A	1.495e^-4	0.718	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12460300	2R_12460300_SNP [dm3] 2R_16572795_SNP [dm6]	A	C	1.501e^-4	0.718	INTRON CG4927
2R	11081481	2R_11081481_SNP [dm3] 2R_15193976_SNP [dm6]	C	G	1.505e^-4	0.718	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	18259283	2R_18259283_SNP [dm3] 2R_22371778_SNP [dm6]	A	G	1.514e^-4	0.718	INTRON Liprin-gamma
2L	9427246	2L_9427246_SNP [dm3] 2L_9427246_SNP [dm6]	G	A	1.515e^-4	0.718	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17705583	3L_17705583_SNP [dm3] 3L_17712483_SNP [dm6]	C	A	1.517e^-4	0.718	INTRON Ccn
2R	14063969	2R_14063969_SNP [dm3] 2R_18176464_SNP [dm6]	T	G	1.520e^-4	0.718	SYNONYMOUS_CODING CG5726 DOWNSTREAM CG10916	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4138503	2L_4138503_SNP [dm3] 2L_4138503_SNP [dm6]	T	C	1.521e^-4	0.718	INTERGENIC
3L	19173003	3L_19173003_SNP [dm3] 3L_19179903_SNP [dm6]	G	A	1.523e^-4	0.718	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12000550	3L_12000550_SNP [dm3] 3L_12007450_SNP [dm6]	A	G	1.526e^-4	0.718	DOWNSTREAM rols INTRON CG6928
2R	14572457	2R_14572457_SNP [dm3] 2R_18684952_SNP [dm6]	G	C	1.528e^-4	0.718	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
3R	22762892	3R_22762892_SNP [dm3] 3R_26937170_SNP [dm6]	G	A	1.529e^-4	0.718	INTRON sda
3R	13147953	3R_13147953_SNP [dm3] 3R_17322231_SNP [dm6]	A	T	1.532e^-4	0.718	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2L	10964290	2L_10964290_SNP [dm3] 2L_10964290_SNP [dm6]	G	T	1.532e^-4	0.718	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2L	11056854	2L_11056854_SNP [dm3] 2L_11056854_SNP [dm6]	A	T	1.533e^-4	0.718	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14572484	2R_14572484_SNP [dm3] 2R_18684979_SNP [dm6]	T	A	1.533e^-4	0.718	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19208832	3L_19208832_SNP [dm3] 3L_19215732_SNP [dm6]	A	T	1.540e^-4	0.718	INTRON fz2
2L	11619668	2L_11619668_SNP [dm3] 2L_11619668_SNP [dm6]	C	T	1.540e^-4	0.718	INTRON kek2
X	1625788	X_1625788_SNP [dm3] X_1731755_SNP [dm6]	A	C	1.541e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3119698	2R_3119698_SNP [dm3] 2R_7232193_SNP [dm6]	A	G	1.543e^-4	0.718	DOWNSTREAM Or43a INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15519862	3R_15519862_SNP [dm3] 3R_19694140_SNP [dm6]	G	A	1.544e^-4	0.718	INTRON Naam
2R	15763698	2R_15763698_SNP [dm3] 2R_19876193_SNP [dm6]	C	T	1.557e^-4	0.718	INTERGENIC
2R	13507936	2R_13507936_SNP [dm3] 2R_17620431_SNP [dm6]	A	G	1.562e^-4	0.718	INTRON CG10936
3L	14498916	3L_14498916_SNP [dm3] 3L_14505816_SNP [dm6]	A	G	1.563e^-4	0.718	INTRON bbg
2L	8267088	2L_8267088_SNP [dm3] 2L_8267088_SNP [dm6]	A	C	1.563e^-4	0.718	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	8267110	2L_8267110_SNP [dm3] 2L_8267110_SNP [dm6]	T	A	1.563e^-4	0.718	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	928611	2L_928611_SNP [dm3] 2L_928611_SNP [dm6]	C	T	1.566e^-4	0.718	INTRON CG4341
3L	15736281	3L_15736281_SNP [dm3] 3L_15743181_SNP [dm6]	T	C	1.567e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	602211	3L_602211_SNP [dm3] 3L_602211_SNP [dm6]	A	T	1.571e^-4	0.718	INTRON CG13893
3R	26633747	3R_26633747_SNP [dm3] 3R_30808025_SNP [dm6]	G	T	1.573e^-4	0.718	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9466657	2L_9466657_SNP [dm3] 2L_9466657_SNP [dm6]	G	T	1.595e^-4	0.726	INTERGENIC
X	12247257	X_12247257_SNP [dm3] X_12353224_SNP [dm6]	T	C	1.604e^-4	0.728	INTERGENIC
X	5406117	X_5406117_DEL [dm3] X_5512084_DEL [dm6]	AGTGTAACCCCGGAATTGG...	A	1.606e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9063091	3L_9063091_DEL [dm3] 3L_9069991_DEL [dm6]	TTATTCTTTGT...	T	1.613e^-4	0.729	UTR_3_PRIME CG4911
X	14798322	X_14798322_SNP [dm3] X_14904289_SNP [dm6]	A	G	1.617e^-4	0.729	SYNONYMOUS_CODING CG9512 INTRON Flo2
2R	3121223	2R_3121223_SNP [dm3] 2R_7233718_SNP [dm6]	A	T	1.631e^-4	0.734	INTRON Or43a	TF binding site mE1_TFBS_chinmo
2R	19862848	2R_19862848_SNP [dm3] 2R_23975325_SNP [dm6]	C	T	1.638e^-4	0.735	SYNONYMOUS_CODING mr DOWNSTREAM Gadd34
2L	5451491	2L_5451491_SNP [dm3] 2L_5451491_SNP [dm6]	G	T	1.644e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1314903	2R_1314903_SNP [dm3] 2R_5427398_SNP [dm6]	G	C	1.648e^-4	0.735	INTRON laccase2
3L	15724034	3L_15724034_SNP [dm3] 3L_15730934_SNP [dm6]	G	A	1.650e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11306617	2L_11306617_SNP [dm3] 2L_11306617_SNP [dm6]	G	A	1.655e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19311543	3L_19311543_SNP [dm3] 3L_19318443_SNP [dm6]	T	C	1.661e^-4	0.737	INTRON pip	TF binding site mE1_TFBS_cad
2R	18321330	2R_18321330_SNP [dm3] 2R_22433825_SNP [dm6]	G	A	1.676e^-4	0.737	INTERGENIC
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	1.677e^-4	0.737	INTRON CR44997
3L	17633102	3L_17633102_SNP [dm3] 3L_17640002_SNP [dm6]	G	A	1.686e^-4	0.737	SYNONYMOUS_CODING Pep UTR_3_PRIME Pep	TF binding site mE1_TFBS_cad
2R	18329719	2R_18329719_SNP [dm3] 2R_22442214_SNP [dm6]	A	T	1.688e^-4	0.737	INTERGENIC
2R	14098632	2R_14098632_SNP [dm3] 2R_18211127_SNP [dm6]	A	T	1.695e^-4	0.737	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	521767	3L_521767_SNP [dm3] 3L_521767_SNP [dm6]	G	C	1.697e^-4	0.737	INTRON klar
3L	16798829	3L_16798829_SNP [dm3] 3L_16805729_SNP [dm6]	A	T	1.698e^-4	0.737	INTRON CG9674 & 1 other	TF binding site mE1_TFBS_Trl
2L	6376717	2L_6376717_SNP [dm3] 2L_6376717_SNP [dm6]	C	T	1.701e^-4	0.737	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22291468	3R_22291468_SNP [dm3] 3R_26465746_SNP [dm6]	T	A	1.703e^-4	0.737	INTRON CG5455
X	18900289	X_18900289_SNP [dm3] X_19006256_SNP [dm6]	A	T	1.713e^-4	0.737	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6528974	3R_6528974_SNP [dm3] 3R_10703252_SNP [dm6]	G	A	1.713e^-4	0.737	UTR_3_PRIME pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
2L	17419906	2L_17419906_SNP [dm3] 2L_17419906_SNP [dm6]	C	T	1.718e^-4	0.737	INTRON Dif
3L	8023840	3L_8023840_SNP [dm3] 3L_8030740_SNP [dm6]	G	T	1.719e^-4	0.737	INTRON nmo
2L	7290874	2L_7290874_SNP [dm3] 2L_7290874_SNP [dm6]	T	A	1.719e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18197267	3L_18197267_SNP [dm3] 3L_18204167_SNP [dm6]	A	T	1.722e^-4	0.737	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	602317	3L_602317_SNP [dm3] 3L_602317_SNP [dm6]	A	T	1.731e^-4	0.738	INTRON CG13893
2L	3468652	2L_3468652_SNP [dm3] 2L_3468652_SNP [dm6]	C	T	1.732e^-4	0.738	SYNONYMOUS_CODING CG3238	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21469972	3R_21469972_SNP [dm3] 3R_25644250_SNP [dm6]	G	A	1.739e^-4	0.74	INTRON jigr1
3R	17643976	3R_17643976_SNP [dm3] 3R_21818254_SNP [dm6]	C	A	1.747e^-4	0.74	SYNONYMOUS_CODING CASK
3L	5934776	3L_5934776_SNP [dm3] 3L_5941676_SNP [dm6]	T	G	1.749e^-4	0.74	INTRON CG33993
2L	849086	2L_849086_SNP [dm3] 2L_849086_SNP [dm6]	A	C	1.754e^-4	0.74	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17168812	3R_17168812_SNP [dm3] 3R_21343090_SNP [dm6]	A	C	1.756e^-4	0.74	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1625912	X_1625912_SNP [dm3] X_1731879_SNP [dm6]	A	G	1.759e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	1.767e^-4	0.74	DOWNSTREAM CG43760 INTERGENIC
X	18900339	X_18900339_SNP [dm3] X_19006306_SNP [dm6]	T	C	1.770e^-4	0.74	INTRON CG43759	TF binding site mE1_TFBS_HSA
2R	10853926	2R_10853926_SNP [dm3] 2R_14966421_SNP [dm6]	A	T	1.775e^-4	0.74	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7290866	2L_7290866_SNP [dm3] 2L_7290866_SNP [dm6]	T	C	1.776e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8267085	2L_8267085_SNP [dm3] 2L_8267085_SNP [dm6]	T	C	1.783e^-4	0.742	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	16790816	3L_16790816_SNP [dm3] 3L_16797716_SNP [dm6]	T	A	1.796e^-4	0.745	INTRON CG9674
2L	8267180	2L_8267180_INS [dm3] 2L_8267180_INS [dm6]	C	CC	1.807e^-4	0.748	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	8267132	2L_8267132_SNP [dm3] 2L_8267132_SNP [dm6]	A	C	1.824e^-4	0.751	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	8023849	3L_8023849_SNP [dm3] 3L_8030749_SNP [dm6]	G	T	1.825e^-4	0.751	INTRON nmo
3R	20053152	3R_20053152_SNP [dm3] 3R_24227430_SNP [dm6]	G	T	1.826e^-4	0.751	NON_SYNONYMOUS_CODING CG13609 UPSTREAM Spps DOWNSTREAM Spase22-23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	16796543	3L_16796543_SNP [dm3] 3L_16803443_SNP [dm6]	C	T	1.836e^-4	0.753	INTRON CG9674	TF binding site mE1_TFBS_cad
2R	18278441	2R_18278441_SNP [dm3] 2R_22390936_SNP [dm6]	G	A	1.842e^-4	0.753	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9477340	3R_9477340_SNP [dm3] 3R_13651618_SNP [dm6]	G	A	1.847e^-4	0.753	UTR_3_PRIME rin
3L	16796000	3L_16796000_SNP [dm3] 3L_16802900_SNP [dm6]	C	T	1.853e^-4	0.753	INTRON CG9674
2R	1302275	2R_1302275_SNP [dm3] 2R_5414770_SNP [dm6]	T	A	1.860e^-4	0.753	INTRON laccase2
X	6737005	X_6737005_SNP [dm3] X_6842972_SNP [dm6]	T	C	1.862e^-4	0.753	SYNONYMOUS_CODING CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21926821	3R_21926821_SNP [dm3] 3R_26101099_SNP [dm6]	T	C	1.863e^-4	0.753	INTERGENIC
3L	1138786	3L_1138786_SNP [dm3] 3L_1138786_SNP [dm6]	T	C	1.866e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19856972	2R_19856972_SNP [dm3] 2R_23969449_SNP [dm6]	G	A	1.869e^-4	0.753	SYNONYMOUS_CODING CG10904 UPSTREAM CG3065 DOWNSTREAM or	TF binding site mE1_TFBS_sens
3L	7321156	3L_7321156_SNP [dm3] 3L_7328056_SNP [dm6]	T	C	1.881e^-4	0.753	SYNONYMOUS_CODING CG8602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	11093987	2L_11093987_SNP [dm3] 2L_11093987_SNP [dm6]	G	T	1.888e^-4	0.753	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23790057	3R_23790057_SNP [dm3] 3R_27964335_SNP [dm6]	A	G	1.889e^-4	0.753	SYNONYMOUS_CODING CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22152938	X_22152938_SNP [dm3] X_22751102_SNP [dm6]	T	C	1.902e^-4	0.753	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3L	20529753	3L_20529753_SNP [dm3] 3L_20536653_SNP [dm6]	C	A	1.913e^-4	0.753	INTRON Rcd2
X	6107480	X_6107480_SNP [dm3] X_6213447_SNP [dm6]	C	A	1.926e^-4	0.753	INTERGENIC
2R	12364888	2R_12364888_SNP [dm3] 2R_16477383_SNP [dm6]	G	A	1.927e^-4	0.753	INTERGENIC
3R	10601245	3R_10601245_SNP [dm3] 3R_14775523_SNP [dm6]	A	C	1.930e^-4	0.753	INTRON jvl
2R	3108389	2R_3108389_SNP [dm3] 2R_7220884_SNP [dm6]	G	C	1.933e^-4	0.753	SPLICE_SITE_REGION pk INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15001710	2L_15001710_SNP [dm3] 2L_15001710_SNP [dm6]	C	T	1.937e^-4	0.753	INTERGENIC
3R	24930193	3R_24930193_SNP [dm3] 3R_29104471_SNP [dm6]	T	G	1.938e^-4	0.753	INTRON CG11873	TF binding site mE1_TFBS_cad
2L	7064201	2L_7064201_SNP [dm3] 2L_7064201_SNP [dm6]	G	T	1.939e^-4	0.753	DOWNSTREAM Nuf2 & 1 other INTRON Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	17238605	2R_17238605_SNP [dm3] 2R_21351100_SNP [dm6]	G	C	1.940e^-4	0.753	UPSTREAM CG17974 INTERGENIC
2R	5811150	2R_5811150_SNP [dm3] 2R_9923645_SNP [dm6]	T	C	1.947e^-4	0.753	INTRON Mef2
2L	15775835	2L_15775835_SNP [dm3] 2L_15775835_SNP [dm6]	T	C	1.948e^-4	0.753	DOWNSTREAM CG43760 INTERGENIC
X	3367302	X_3367302_SNP [dm3] X_3473269_SNP [dm6]	A	G	1.950e^-4	0.753	UTR_5_PRIME CG12206 INTRON CR44999	TF binding site mE1_TFBS_cad
2L	9191196	2L_9191196_INS [dm3] 2L_9191196_INS [dm6]	T	TT	1.950e^-4	0.753	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	845424	3L_845424_SNP [dm3] 3L_845424_SNP [dm6]	A	T	1.950e^-4	0.753	INTRON CG13889	TF binding site mE1_TFBS_chinmo
X	7117740	X_7117740_SNP [dm3] X_7223707_SNP [dm6]	C	T	1.955e^-4	0.753	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	17238569	2R_17238569_SNP [dm3] 2R_21351064_SNP [dm6]	A	G	1.961e^-4	0.753	UPSTREAM CG17974 INTERGENIC
3L	9828620	3L_9828620_SNP [dm3] 3L_9835520_SNP [dm6]	C	T	1.961e^-4	0.753	INTRON I-2
2R	1908589	2R_1908589_SNP [dm3] 2R_6021084_SNP [dm6]	A	T	1.967e^-4	0.753	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18435796	2R_18435796_SNP [dm3] 2R_22548291_SNP [dm6]	T	C	1.976e^-4	0.753	INTRON px
3R	23490117	3R_23490117_SNP [dm3] 3R_27664395_SNP [dm6]	C	T	1.976e^-4	0.753	INTRON unc80	TF binding site mE1_TFBS_cad
2R	7110422	2R_7110422_SNP [dm3] 2R_11222917_SNP [dm6]	T	C	1.980e^-4	0.753	START_GAINED CG7737 UTR_5_PRIME CG7737 UPSTREAM CG7737 DOWNSTREAM Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19357290	X_19357290_SNP [dm3] X_19463257_SNP [dm6]	T	C	1.981e^-4	0.753	INTRON kek5
2R	16577238	2R_16577238_SNP [dm3] 2R_20689733_SNP [dm6]	G	T	1.986e^-4	0.753	INTERGENIC
3R	6505015	3R_6505015_SNP [dm3] 3R_10679293_SNP [dm6]	G	T	1.998e^-4	0.753	INTRON CG14688
X	14680051	X_14680051_SNP [dm3] X_14786018_SNP [dm6]	A	T	1.999e^-4	0.753	UPSTREAM CR45522 INTRON Ag5r
2L	19920106	2L_19920106_SNP [dm3] 2L_19920106_SNP [dm6]	C	T	2.001e^-4	0.753	INTRON sick EXON CR43828
3R	4850581	3R_4850581_SNP [dm3] 3R_9024859_SNP [dm6]	T	C	2.010e^-4	0.753	DOWNSTREAM CR31429 INTRON neur	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17551056	2L_17551056_MNP [dm3] 2L_17551056_MNP [dm6]	TAT	CGG	2.013e^-4	0.753	INTERGENIC
3R	6550485	3R_6550485_SNP [dm3] 3R_10724763_SNP [dm6]	T	A	2.015e^-4	0.753	INTERGENIC
3R	25532138	3R_25532138_SNP [dm3] 3R_29706416_SNP [dm6]	G	A	2.016e^-4	0.753	INTERGENIC
X	18899368	X_18899368_SNP [dm3] X_19005335_SNP [dm6]	G	T	2.024e^-4	0.753	INTRON CG43759
2R	5815815	2R_5815815_SNP [dm3] 2R_9928310_SNP [dm6]	T	G	2.025e^-4	0.753	INTRON Mef2
3L	14964971	3L_14964971_DEL [dm3] 3L_14971871_DEL [dm6]	AA	G	2.025e^-4	0.753	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	16788446	3L_16788446_SNP [dm3] 3L_16795346_SNP [dm6]	G	A	2.026e^-4	0.753	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad
X	18813242	X_18813242_SNP [dm3] X_18919209_SNP [dm6]	C	A	2.031e^-4	0.753	INTERGENIC
X	21280180	X_21280180_INS [dm3] X_21409153_INS [dm6]	A	ATATAT	2.033e^-4	0.753	DOWNSTREAM CR45003 INTERGENIC
2R	11286741	2R_11286741_SNP [dm3] 2R_15399236_SNP [dm6]	C	A	2.034e^-4	0.753	INTERGENIC
2R	19505720	2R_19505720_SNP [dm3] 2R_23618197_SNP [dm6]	G	A	2.036e^-4	0.753	INTERGENIC
2L	1361611	2L_1361611_DEL [dm3] 2L_1361611_DEL [dm6]	TGGA	C	2.040e^-4	0.753	INTRON NLaz	TF binding site mE1_TFBS_cad
3R	9160591	3R_9160591_SNP [dm3] 3R_13334869_SNP [dm6]	C	T	2.044e^-4	0.753	UPSTREAM PK2-R2 INTERGENIC
2L	11306469	2L_11306469_DEL [dm3] 2L_11306469_DEL [dm6]	TGCCGATGCAGAT...	T	2.047e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9269645	2L_9269645_SNP [dm3] 2L_9269645_SNP [dm6]	C	A	2.053e^-4	0.753	INTRON Ggamma30A
3R	12593628	3R_12593628_SNP [dm3] 3R_16767906_SNP [dm6]	C	T	2.058e^-4	0.754	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7027884	2R_7027884_SNP [dm3] 2R_11140379_SNP [dm6]	T	G	2.067e^-4	0.755	INTRON CG13229
3L	1908301	3L_1908301_SNP [dm3] 3L_1908301_SNP [dm6]	T	C	2.070e^-4	0.755	INTRON CG1887
X	18886957	X_18886957_SNP [dm3] X_18992924_SNP [dm6]	C	T	2.088e^-4	0.756	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16387908	2R_16387908_DEL [dm3] 2R_20500403_DEL [dm6]	CC	C	2.097e^-4	0.756	INTERGENIC
2R	17765655	2R_17765655_SNP [dm3] 2R_21878150_SNP [dm6]	A	G	2.110e^-4	0.756	INTRON Fili	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	11287178	2R_11287178_SNP [dm3] 2R_15399673_SNP [dm6]	C	T	2.113e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5590978	X_5590978_SNP [dm3] X_5696945_SNP [dm6]	C	T	2.120e^-4	0.756	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv
2L	15841813	2L_15841813_SNP [dm3] 2L_15841813_SNP [dm6]	T	C	2.126e^-4	0.756	UPSTREAM CR45694 INTERGENIC
3L	3844948	3L_3844948_SNP [dm3] 3L_3844948_SNP [dm6]	A	T	2.129e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	18487354	X_18487354_SNP [dm3] X_18593321_SNP [dm6]	C	T	2.130e^-4	0.756	INTERGENIC
2L	14957448	2L_14957448_INS [dm3] 2L_14957448_INS [dm6]	C	CAGTCTGTGGACC...	2.133e^-4	0.756	INTRON CG42313
2L	8267160	2L_8267160_SNP [dm3] 2L_8267160_SNP [dm6]	C	T	2.134e^-4	0.756	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
X	16282810	X_16282810_SNP [dm3] X_16388777_SNP [dm6]	A	T	2.137e^-4	0.756	DOWNSTREAM TH1 & 1 other INTERGENIC
2R	3121240	2R_3121240_SNP [dm3] 2R_7233735_SNP [dm6]	G	A	2.144e^-4	0.756	INTRON Or43a	TF binding site mE1_TFBS_chinmo
3L	16795890	3L_16795890_SNP [dm3] 3L_16802790_SNP [dm6]	A	T	2.175e^-4	0.756	INTRON CG9674
2R	14807590	2R_14807590_DEL [dm3] 2R_18920085_DEL [dm6]	TGCT	T	2.179e^-4	0.756	INTRON sano
3L	9189613	3L_9189613_SNP [dm3] 3L_9196513_SNP [dm6]	C	T	2.180e^-4	0.756	INTERGENIC
X	5236950	X_5236950_SNP [dm3] X_5342917_SNP [dm6]	A	G	2.182e^-4	0.756	INTRON SK
2L	3194816	2L_3194816_SNP [dm3] 2L_3194816_SNP [dm6]	A	G	2.185e^-4	0.756	INTRON CG34393
2L	3721145	2L_3721145_SNP [dm3] 2L_3721145_SNP [dm6]	A	C	2.187e^-4	0.756	UPSTREAM Shaw INTRON Shaw
2R	17011469	2R_17011469_SNP [dm3] 2R_21123964_SNP [dm6]	A	G	2.194e^-4	0.756	UTR_3_PRIME CG4050 DOWNSTREAM ktub	TF binding site mE1_TFBS_cad
3R	9317355	3R_9317355_SNP [dm3] 3R_13491633_SNP [dm6]	C	G	2.197e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16336301	2L_16336301_SNP [dm3] 2L_16336301_SNP [dm6]	G	T	2.199e^-4	0.756	NON_SYNONYMOUS_CODING CG31817
2L	8053497	2L_8053497_SNP [dm3] 2L_8053497_SNP [dm6]	C	A	2.207e^-4	0.756	UTR_3_PRIME CG7466 DOWNSTREAM poe
2L	19920038	2L_19920038_SNP [dm3] 2L_19920038_SNP [dm6]	T	C	2.209e^-4	0.756	INTRON sick EXON CR43828
2L	2448320	2L_2448320_SNP [dm3] 2L_2448320_SNP [dm6]	G	A	2.219e^-4	0.756	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	2.225e^-4	0.756	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14572613	X_14572613_SNP [dm3] X_14678580_SNP [dm6]	T	A	2.231e^-4	0.756	UPSTREAM CG5321 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9324850	3L_9324850_SNP [dm3] 3L_9331750_SNP [dm6]	G	A	2.232e^-4	0.756	INTERGENIC
3R	23520377	3R_23520377_SNP [dm3] 3R_27694655_SNP [dm6]	T	A	2.233e^-4	0.756	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
2R	19855910	2R_19855910_SNP [dm3] 2R_23968387_SNP [dm6]	G	A	2.234e^-4	0.756	SYNONYMOUS_CODING or UPSTREAM CG34213 DOWNSTREAM CG10904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	6107482	X_6107482_SNP [dm3] X_6213449_SNP [dm6]	C	T	2.238e^-4	0.756	INTERGENIC
3L	7694698	3L_7694698_SNP [dm3] 3L_7701598_SNP [dm6]	C	T	2.242e^-4	0.756	INTRON CG32373 & 1 other
3R	16999852	3R_16999852_SNP [dm3] 3R_21174130_SNP [dm6]	C	T	2.251e^-4	0.756	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13417020	2L_13417020_SNP [dm3] 2L_13417020_SNP [dm6]	T	C	2.254e^-4	0.756	INTRON CG43850 & 1 other
3R	6116208	3R_6116208_SNP [dm3] 3R_10290486_SNP [dm6]	A	C	2.255e^-4	0.756	UPSTREAM CG43143 INTRON CG43143
3L	1734634	3L_1734634_SNP [dm3] 3L_1734634_SNP [dm6]	T	C	2.262e^-4	0.756	NON_SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	2.266e^-4	0.756	INTRON CG4927
X	11232414	X_11232414_SNP [dm3] X_11338381_SNP [dm6]	G	T	2.275e^-4	0.756	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	13563248	2R_13563248_SNP [dm3] 2R_17675743_SNP [dm6]	G	A	2.277e^-4	0.756	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3243092	2L_3243092_SNP [dm3] 2L_3243092_SNP [dm6]	G	A	2.277e^-4	0.756	INTERGENIC
2R	5817500	2R_5817500_SNP [dm3] 2R_9929995_SNP [dm6]	A	T	2.282e^-4	0.756	UPSTREAM Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11094677	2L_11094677_SNP [dm3] 2L_11094677_SNP [dm6]	A	G	2.286e^-4	0.756	DOWNSTREAM Ge-1 INTRON CG4705
2R	14937476	2R_14937476_SNP [dm3] 2R_19049971_SNP [dm6]	C	A	2.288e^-4	0.756	INTERGENIC
2L	4499623	2L_4499623_SNP [dm3] 2L_4499623_SNP [dm6]	C	T	2.311e^-4	0.756	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4499629	2L_4499629_SNP [dm3] 2L_4499629_SNP [dm6]	A	G	2.311e^-4	0.756	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4284001	2L_4284001_SNP [dm3] 2L_4284001_SNP [dm6]	G	T	2.313e^-4	0.756	UPSTREAM tutl INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17062960	2R_17062960_SNP [dm3] 2R_21175455_SNP [dm6]	T	C	2.316e^-4	0.756	UTR_5_PRIME Pu DOWNSTREAM Xpd	TF binding site mE1_TFBS_Trl
3L	19218884	3L_19218884_SNP [dm3] 3L_19225784_SNP [dm6]	G	A	2.317e^-4	0.756	INTRON fz2	TF binding site mE1_TFBS_inv
3L	19308046	3L_19308046_INS [dm3] 3L_19314946_INS [dm6]	T	TGAATTGGACCCCAGCT...	2.321e^-4	0.756	INTRON pip
3R	9533083	3R_9533083_SNP [dm3] 3R_13707361_SNP [dm6]	T	A	2.323e^-4	0.756	INTRON Adgf-C	TF binding site mE1_TFBS_cad
2R	19862022	2R_19862022_SNP [dm3] 2R_23974499_SNP [dm6]	C	T	2.332e^-4	0.756	INTRON mr
3R	20416425	3R_20416425_SNP [dm3] 3R_24590703_SNP [dm6]	A	G	2.340e^-4	0.756	UTR_5_PRIME mld	TF binding site BDTNP1_TFBS_dl
2R	3130151	2R_3130151_SNP [dm3] 2R_7242646_SNP [dm6]	T	G	2.342e^-4	0.756	DOWNSTREAM Ady43A INTERGENIC
3R	20980462	3R_20980462_SNP [dm3] 3R_25154740_SNP [dm6]	G	A	2.347e^-4	0.756	INTERGENIC
3R	16978826	3R_16978826_SNP [dm3] 3R_21153104_SNP [dm6]	G	C	2.348e^-4	0.756	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23490044	3R_23490044_SNP [dm3] 3R_27664322_SNP [dm6]	A	G	2.349e^-4	0.756	INTRON unc80
2L	11389594	2L_11389594_SNP [dm3] 2L_11389594_SNP [dm6]	T	A	2.350e^-4	0.756	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs
3L	17107788	3L_17107788_SNP [dm3] 3L_17114688_SNP [dm6]	G	C	2.354e^-4	0.756	INTRON Rbp6
X	18900360	X_18900360_DEL [dm3] X_19006327_DEL [dm6]	ACCCCCTC	A	2.360e^-4	0.756	INTRON CG43759
3R	15444291	3R_15444291_SNP [dm3] 3R_19618569_SNP [dm6]	A	G	2.362e^-4	0.756	SYNONYMOUS_CODING CG6231
3R	15461347	3R_15461347_SNP [dm3] 3R_19635625_SNP [dm6]	C	T	2.366e^-4	0.756	INTRON subdued & 1 other
2L	17492750	2L_17492750_DEL [dm3] 2L_17492750_DEL [dm6]	AGCTAATGGC	A	2.373e^-4	0.756	UPSTREAM qua INTRON qua
2R	3121231	2R_3121231_SNP [dm3] 2R_7233726_SNP [dm6]	A	T	2.378e^-4	0.756	INTRON Or43a	TF binding site mE1_TFBS_chinmo
2L	1073357	2L_1073357_SNP [dm3] 2L_1073357_SNP [dm6]	A	G	2.381e^-4	0.756	INTRON S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8504163	2L_8504163_SNP [dm3] 2L_8504163_SNP [dm6]	A	C	2.388e^-4	0.756	INTRON Dh31
X	16737155	X_16737155_INS [dm3] X_16843122_INS [dm6]	A	ATCAA	2.388e^-4	0.756	INTRON RSG7	TF binding site mE1_TFBS_HSA
2L	11094669	2L_11094669_SNP [dm3] 2L_11094669_SNP [dm6]	T	C	2.390e^-4	0.756	DOWNSTREAM Ge-1 INTRON CG4705
X	14779661	X_14779661_SNP [dm3] X_14885628_SNP [dm6]	T	C	2.394e^-4	0.756	DOWNSTREAM CG9514 INTRON Flo2
X	17120601	X_17120601_SNP [dm3] X_17226568_SNP [dm6]	C	T	2.402e^-4	0.756	UTR_5_PRIME CG10598 UPSTREAM CG10598
X	22152854	X_22152854_SNP [dm3] X_22751018_SNP [dm6]	C	T	2.404e^-4	0.756	INTRON CR44997
3L	18197196	3L_18197196_SNP [dm3] 3L_18204096_SNP [dm6]	G	A	2.405e^-4	0.756	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	16282847	X_16282847_SNP [dm3] X_16388814_SNP [dm6]	A	G	2.414e^-4	0.756	DOWNSTREAM TH1 & 1 other INTERGENIC
2R	11448838	2R_11448838_SNP [dm3] 2R_15561333_SNP [dm6]	A	G	2.416e^-4	0.756	INTRON CG12963
X	14440513	X_14440513_SNP [dm3] X_14546480_SNP [dm6]	C	T	2.426e^-4	0.756	INTERGENIC
3L	4776144	3L_4776144_SNP [dm3] 3L_4776144_SNP [dm6]	A	T	2.432e^-4	0.756	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA
X	17168458	X_17168458_SNP [dm3] X_17274425_SNP [dm6]	C	T	2.437e^-4	0.756	INTRON f
2L	8267061	2L_8267061_SNP [dm3] 2L_8267061_SNP [dm6]	A	T	2.437e^-4	0.756	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	18197255	3L_18197255_SNP [dm3] 3L_18204155_SNP [dm6]	T	G	2.444e^-4	0.756	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6538588	3R_6538588_SNP [dm3] 3R_10712866_SNP [dm6]	T	C	2.445e^-4	0.756	INTERGENIC
2L	11935724	2L_11935724_SNP [dm3] 2L_11935724_SNP [dm6]	G	A	2.446e^-4	0.756	UPSTREAM Or33b DOWNSTREAM Or33a INTERGENIC
2R	18938752	2R_18938752_SNP [dm3] 2R_23051229_SNP [dm6]	C	A	2.454e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17409762	2R_17409762_SNP [dm3] 2R_21522257_SNP [dm6]	A	T	2.454e^-4	0.756	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	1724188	2L_1724188_SNP [dm3] 2L_1724188_SNP [dm6]	G	A	2.457e^-4	0.756	UTR_5_PRIME Rim2 DOWNSTREAM Eno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	2347614	2L_2347614_SNP [dm3] 2L_2347614_SNP [dm6]	T	A	2.460e^-4	0.756	INTRON CG9967 & 1 other
2R	17763606	2R_17763606_SNP [dm3] 2R_21876101_SNP [dm6]	G	A	2.462e^-4	0.756	INTRON Fili
2R	17763607	2R_17763607_SNP [dm3] 2R_21876102_SNP [dm6]	G	T	2.462e^-4	0.756	INTRON Fili
3R	10944549	3R_10944549_SNP [dm3] 3R_15118827_SNP [dm6]	C	T	2.469e^-4	0.756	INTRON CG42788
3R	20788441	3R_20788441_SNP [dm3] 3R_24962719_SNP [dm6]	A	C	2.470e^-4	0.756	INTERGENIC
2R	11308007	2R_11308007_INS [dm3] 2R_15420502_INS [dm6]	T	TTTTTGAGCGCT...	2.475e^-4	0.756	INTRON CG43729
3L	822330	3L_822330_SNP [dm3] 3L_822330_SNP [dm6]	T	A	2.483e^-4	0.756	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	2.490e^-4	0.756	INTRON klar
2R	10986397	2R_10986397_DEL [dm3] 2R_15098892_DEL [dm6]	AG	A	2.492e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7791159	2R_7791159_SNP [dm3] 2R_11903654_SNP [dm6]	G	A	2.492e^-4	0.756	SYNONYMOUS_CODING MCPH1 UPSTREAM MCPH1 DOWNSTREAM CG13183	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	8106696	2R_8106696_SNP [dm3] 2R_12219191_SNP [dm6]	G	A	2.494e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10850686	2R_10850686_DEL [dm3] 2R_14963181_DEL [dm6]	CAC	C	2.495e^-4	0.756	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13416851	2L_13416851_SNP [dm3] 2L_13416851_SNP [dm6]	G	C	2.497e^-4	0.756	INTRON CG43850 & 1 other
X	3356161	X_3356161_SNP [dm3] X_3462128_SNP [dm6]	A	G	2.507e^-4	0.756	SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999
X	16282834	X_16282834_SNP [dm3] X_16388801_SNP [dm6]	G	A	2.507e^-4	0.756	DOWNSTREAM TH1 & 1 other INTERGENIC
2R	21082280	2R_21082280_SNP [dm3] 2R_25194757_SNP [dm6]	G	A	2.516e^-4	0.756	INTRON CG9380
X	8753788	X_8753788_SNP [dm3] X_8859755_SNP [dm6]	G	A	2.520e^-4	0.756	INTRON CG12075
2L	15738615	2L_15738615_SNP [dm3] 2L_15738615_SNP [dm6]	A	G	2.520e^-4	0.756	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3088258	2L_3088258_DEL [dm3] 2L_3088258_DEL [dm6]	TATGT	T	2.524e^-4	0.756	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10960099	3L_10960099_SNP [dm3] 3L_10966999_SNP [dm6]	G	T	2.526e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17153477	2L_17153477_SNP [dm3] 2L_17153477_SNP [dm6]	G	A	2.534e^-4	0.756	INTRON beat-IIIa & 1 other
3R	23958950	3R_23958950_DEL [dm3] 3R_28133228_DEL [dm6]	AACAAT	A	2.541e^-4	0.756	INTERGENIC
3L	18008738	3L_18008738_SNP [dm3] 3L_18015638_SNP [dm6]	T	G	2.542e^-4	0.756	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17388264	3R_17388264_SNP [dm3] 3R_21562542_SNP [dm6]	A	T	2.548e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6724553	3R_6724553_INS [dm3] 3R_10898831_INS [dm6]	A	ACCTTTGTTAGTA...	2.556e^-4	0.756	UPSTREAM CR45578 INTERGENIC
3R	18799673	3R_18799673_SNP [dm3] 3R_22973951_SNP [dm6]	G	A	2.566e^-4	0.756	INTERGENIC
3L	7304921	3L_7304921_SNP [dm3] 3L_7311821_SNP [dm6]	A	C	2.567e^-4	0.756	INTRON unc-13-4A
3L	14583078	3L_14583078_SNP [dm3] 3L_14589978_SNP [dm6]	T	G	2.573e^-4	0.756	INTRON HGTX
3L	16795915	3L_16795915_SNP [dm3] 3L_16802815_SNP [dm6]	G	A	2.573e^-4	0.756	INTRON CG9674
3L	16795916	3L_16795916_SNP [dm3] 3L_16802816_SNP [dm6]	A	T	2.573e^-4	0.756	INTRON CG9674
2R	21105129	2R_21105129_SNP [dm3] 2R_25217606_SNP [dm6]	G	T	2.575e^-4	0.756	INTRON CG9380	regulatory region FlyBase REDfly_CRMs
3R	17248552	3R_17248552_SNP [dm3] 3R_21422830_SNP [dm6]	C	T	2.577e^-4	0.756	INTRON lbl
2R	18938720	2R_18938720_SNP [dm3] 2R_23051197_SNP [dm6]	C	T	2.580e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20053925	3R_20053925_SNP [dm3] 3R_24228203_SNP [dm6]	G	A	2.583e^-4	0.756	SYNONYMOUS_CODING CG13609 UPSTREAM Acp95EF DOWNSTREAM Spase22-23	TF binding site mE1_TFBS_ttk
2L	10499146	2L_10499146_SNP [dm3] 2L_10499146_SNP [dm6]	C	A	2.592e^-4	0.756	INTRON Myo31DF
3R	6539071	3R_6539071_SNP [dm3] 3R_10713349_SNP [dm6]	G	T	2.593e^-4	0.756	INTERGENIC
3L	12704316	3L_12704316_SNP [dm3] 3L_12711216_SNP [dm6]	C	T	2.595e^-4	0.756	DOWNSTREAM mirr INTERGENIC
3L	19220772	3L_19220772_SNP [dm3] 3L_19227672_SNP [dm6]	A	G	2.598e^-4	0.756	INTRON fz2
3L	7208671	3L_7208671_SNP [dm3] 3L_7215571_SNP [dm6]	G	A	2.610e^-4	0.756	INTERGENIC
3R	9636901	3R_9636901_SNP [dm3] 3R_13811179_SNP [dm6]	A	T	2.612e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16784820	3L_16784820_SNP [dm3] 3L_16791720_SNP [dm6]	G	A	2.612e^-4	0.756	UTR_3_PRIME CG9674 INTRON CG9674	TF binding site mE1_TFBS_cad
3L	15707136	3L_15707136_SNP [dm3] 3L_15714036_SNP [dm6]	G	A	2.613e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4582533	2L_4582533_SNP [dm3] 2L_4582533_SNP [dm6]	A	G	2.613e^-4	0.756	INTRON dp EXON CR43716
2R	17016294	2R_17016294_SNP [dm3] 2R_21128789_SNP [dm6]	G	A	2.613e^-4	0.756	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6417811	X_6417811_SNP [dm3] X_6523778_SNP [dm6]	A	G	2.618e^-4	0.756	UTR_5_PRIME CG42340 UPSTREAM CG3918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18332702	2R_18332702_SNP [dm3] 2R_22445197_SNP [dm6]	T	C	2.620e^-4	0.756	INTERGENIC
2L	11389598	2L_11389598_SNP [dm3] 2L_11389598_SNP [dm6]	T	C	2.621e^-4	0.756	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs
2R	10969279	2R_10969279_SNP [dm3] 2R_15081774_SNP [dm6]	G	C	2.634e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19352900	2R_19352900_SNP [dm3] 2R_23465377_SNP [dm6]	C	G	2.635e^-4	0.756	INTRON CG43795
3L	15731605	3L_15731605_SNP [dm3] 3L_15738505_SNP [dm6]	C	G	2.637e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12254634	2R_12254634_SNP [dm3] 2R_16367129_SNP [dm6]	T	A	2.639e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19880511	2L_19880511_SNP [dm3] 2L_19880511_SNP [dm6]	G	A	2.640e^-4	0.756	INTRON sick
2R	18321407	2R_18321407_SNP [dm3] 2R_22433902_SNP [dm6]	G	A	2.641e^-4	0.756	INTERGENIC
2R	17149706	2R_17149706_SNP [dm3] 2R_21262201_SNP [dm6]	C	T	2.642e^-4	0.756	INTRON Rgk3
2R	17781630	2R_17781630_SNP [dm3] 2R_21894125_SNP [dm6]	T	C	2.643e^-4	0.756	INTRON Fili
2L	15841784	2L_15841784_SNP [dm3] 2L_15841784_SNP [dm6]	C	T	2.645e^-4	0.756	UPSTREAM CR45694 INTERGENIC
3R	16993140	3R_16993140_SNP [dm3] 3R_21167418_SNP [dm6]	T	A	2.646e^-4	0.756	INTRON SNF4Agamma & 1 other
2L	2849528	2L_2849528_SNP [dm3] 2L_2849528_SNP [dm6]	T	A	2.648e^-4	0.756	UTR_3_PRIME CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad
2R	11081504	2R_11081504_SNP [dm3] 2R_15193999_SNP [dm6]	C	A	2.649e^-4	0.756	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
2L	3810751	2L_3810751_SNP [dm3] 2L_3810751_SNP [dm6]	G	A	2.654e^-4	0.756	DOWNSTREAM CG3407 & 1 other INTERGENIC
3L	7726672	3L_7726672_SNP [dm3] 3L_7733572_SNP [dm6]	A	G	2.662e^-4	0.756	SYNONYMOUS_CODING Snmp2 INTRON CG32373
2L	12790373	2L_12790373_SNP [dm3] 2L_12790373_SNP [dm6]	A	C	2.663e^-4	0.756	INTERGENIC
3L	7731379	3L_7731379_SNP [dm3] 3L_7738279_SNP [dm6]	A	G	2.668e^-4	0.756	INTRON CG32373 & 1 other
3R	10341315	3R_10341315_SNP [dm3] 3R_14515593_SNP [dm6]	C	A	2.674e^-4	0.756	UTR_3_PRIME Pde6
X	14680049	X_14680049_SNP [dm3] X_14786016_SNP [dm6]	C	A	2.674e^-4	0.756	UPSTREAM CR45522 INTRON Ag5r
X	13852862	X_13852862_SNP [dm3] X_13958829_SNP [dm6]	A	T	2.676e^-4	0.756	INTRON mamo
3L	7748624	3L_7748624_SNP [dm3] 3L_7755524_SNP [dm6]	T	C	2.679e^-4	0.756	DOWNSTREAM CG7409 INTRON CG32373
2R	17390370	2R_17390370_INS [dm3] 2R_21502865_INS [dm6]	T	TT	2.680e^-4	0.756	INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	602316	3L_602316_SNP [dm3] 3L_602316_SNP [dm6]	G	A	2.681e^-4	0.756	INTRON CG13893
2L	2090099	2L_2090099_SNP [dm3] 2L_2090099_SNP [dm6]	T	C	2.700e^-4	0.757	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	17492167	2L_17492167_SNP [dm3] 2L_17492167_SNP [dm6]	G	A	2.701e^-4	0.757	UTR_5_PRIME qua INTRON qua
3L	15889641	3L_15889641_SNP [dm3] 3L_15896541_SNP [dm6]	G	A	2.702e^-4	0.757	INTRON pHCl
2L	9201080	2L_9201080_SNP [dm3] 2L_9201080_SNP [dm6]	G	C	2.708e^-4	0.757	INTRON tai
2R	17392080	2R_17392080_SNP [dm3] 2R_21504575_SNP [dm6]	A	C	2.708e^-4	0.757	INTRON MESK2	TF binding site mE1_TFBS_inv
3R	15670180	3R_15670180_SNP [dm3] 3R_19844458_SNP [dm6]	C	T	2.716e^-4	0.757	INTERGENIC
2L	17551039	2L_17551039_SNP [dm3] 2L_17551039_SNP [dm6]	G	C	2.716e^-4	0.757	INTERGENIC
3R	9115240	3R_9115240_SNP [dm3] 3R_13289518_SNP [dm6]	T	C	2.732e^-4	0.757	UPSTREAM CG15887 INTERGENIC
2R	18256360	2R_18256360_SNP [dm3] 2R_22368855_SNP [dm6]	G	A	2.738e^-4	0.757	INTRON Liprin-gamma
3L	15726333	3L_15726333_SNP [dm3] 3L_15733233_SNP [dm6]	A	T	2.741e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17364457	3L_17364457_SNP [dm3] 3L_17371357_SNP [dm6]	T	C	2.748e^-4	0.757	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16179176	X_16179176_SNP [dm3] X_16285143_SNP [dm6]	C	A	2.757e^-4	0.757	UTR_3_PRIME eas DOWNSTREAM CG32576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15729090	3L_15729090_SNP [dm3] 3L_15735990_SNP [dm6]	G	A	2.760e^-4	0.757	INTERGENIC
2L	9262563	2L_9262563_SNP [dm3] 2L_9262563_SNP [dm6]	A	G	2.763e^-4	0.757	INTRON Ggamma30A EXON CR45262
2R	21078849	2R_21078849_SNP [dm3] 2R_25191326_SNP [dm6]	T	A	2.767e^-4	0.757	INTRON CG9380	TF binding site mE1_TFBS_bab1
2L	9421331	2L_9421331_SNP [dm3] 2L_9421331_SNP [dm6]	A	G	2.780e^-4	0.757	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9979448	X_9979448_SNP [dm3] X_10085415_SNP [dm6]	A	C	2.783e^-4	0.757	DOWNSTREAM CG2972 INTRON CG2974	TF binding site mE1_TFBS_sens
X	5611190	X_5611190_SNP [dm3] X_5717157_SNP [dm6]	C	A	2.789e^-4	0.757	INTRON CG33080
3R	15464995	3R_15464995_SNP [dm3] 3R_19639273_SNP [dm6]	A	C	2.794e^-4	0.757	NON_SYNONYMOUS_CODING subdued
X	6107684	X_6107684_SNP [dm3] X_6213651_SNP [dm6]	C	T	2.797e^-4	0.757	INTERGENIC
3L	4516352	3L_4516352_SNP [dm3] 3L_4516352_SNP [dm6]	C	T	2.797e^-4	0.757	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16795934	3L_16795934_SNP [dm3] 3L_16802834_SNP [dm6]	G	A	2.818e^-4	0.757	INTRON CG9674
4	318366	4_318366_DEL [dm3] 4_297740_DEL [dm6]	TT	T	2.820e^-4	0.757	INTRON Syt7	transposable element FlyBase
2R	9520084	2R_9520084_SNP [dm3] 2R_13632579_SNP [dm6]	A	G	2.823e^-4	0.757	INTRON fas
2L	7015977	2L_7015977_SNP [dm3] 2L_7015977_SNP [dm6]	C	T	2.833e^-4	0.757	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15672374	3R_15672374_SNP [dm3] 3R_19846652_SNP [dm6]	A	T	2.834e^-4	0.757	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20787865	3R_20787865_SNP [dm3] 3R_24962143_SNP [dm6]	C	A	2.834e^-4	0.757	INTERGENIC
2L	8442684	2L_8442684_SNP [dm3] 2L_8442684_SNP [dm6]	T	A	2.840e^-4	0.757	SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
X	16285355	X_16285355_SNP [dm3] X_16391322_SNP [dm6]	C	T	2.841e^-4	0.757	SYNONYMOUS_CODING TH1 UPSTREAM mei-41	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19167362	X_19167362_SNP [dm3] X_19273329_SNP [dm6]	T	G	2.844e^-4	0.757	DOWNSTREAM CG32537 & 1 other INTERGENIC
3L	18093070	3L_18093070_SNP [dm3] 3L_18099970_SNP [dm6]	C	T	2.847e^-4	0.757	INTRON CG13698
2L	9269473	2L_9269473_SNP [dm3] 2L_9269473_SNP [dm6]	T	C	2.849e^-4	0.757	INTRON Ggamma30A
2R	3129979	2R_3129979_SNP [dm3] 2R_7242474_SNP [dm6]	T	C	2.850e^-4	0.757	DOWNSTREAM Ady43A INTERGENIC
3R	15676471	3R_15676471_SNP [dm3] 3R_19850749_SNP [dm6]	A	T	2.850e^-4	0.757	INTRON CG4662
2R	3130162	2R_3130162_SNP [dm3] 2R_7242657_SNP [dm6]	A	T	2.854e^-4	0.757	DOWNSTREAM Ady43A INTERGENIC
3R	23961245	3R_23961245_SNP [dm3] 3R_28135523_SNP [dm6]	C	A	2.858e^-4	0.757	INTERGENIC
X	22152263	X_22152263_SNP [dm3] X_22750427_SNP [dm6]	C	A	2.858e^-4	0.757	INTRON CR44997
2R	21104000	2R_21104000_SNP [dm3] 2R_25216477_SNP [dm6]	A	G	2.859e^-4	0.757	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z transposable element FlyBase
3R	21470242	3R_21470242_SNP [dm3] 3R_25644520_SNP [dm6]	T	A	2.861e^-4	0.757	INTRON jigr1
X	17320945	X_17320945_SNP [dm3] X_17426912_SNP [dm6]	A	T	2.861e^-4	0.757	NON_SYNONYMOUS_CODING CG5613 INTRON CG12994
X	22144266	X_22144266_SNP [dm3] X_22742430_SNP [dm6]	T	C	2.865e^-4	0.757	INTRON CR44997
3R	15695093	3R_15695093_SNP [dm3] 3R_19869371_SNP [dm6]	A	G	2.868e^-4	0.757	INTRON CG4562	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15695098	3R_15695098_SNP [dm3] 3R_19869376_SNP [dm6]	A	G	2.868e^-4	0.757	INTRON CG4562	TF binding site mE1_TFBS_cad
2L	14340892	2L_14340892_SNP [dm3] 2L_14340892_SNP [dm6]	T	C	2.870e^-4	0.757	DOWNSTREAM CG15286 INTRON CG33090
X	3796883	X_3796883_SNP [dm3] X_3902850_SNP [dm6]	T	G	2.875e^-4	0.757	INTRON CG42541
2R	17010894	2R_17010894_SNP [dm3] 2R_21123389_SNP [dm6]	G	T	2.876e^-4	0.757	UTR_3_PRIME ktub DOWNSTREAM CG4050	TF binding site mE1_TFBS_cad
2R	19352904	2R_19352904_SNP [dm3] 2R_23465381_SNP [dm6]	C	T	2.876e^-4	0.757	INTRON CG43795
3L	4776398	3L_4776398_SNP [dm3] 3L_4776398_SNP [dm6]	G	T	2.880e^-4	0.757	INTRON RhoGEF64C
2L	9271018	2L_9271018_INS [dm3] 2L_9271018_INS [dm6]	T	TT	2.891e^-4	0.759	INTRON Ggamma30A	TF binding site mE1_TFBS_HSA
3R	7597587	3R_7597587_SNP [dm3] 3R_11771865_SNP [dm6]	T	C	2.907e^-4	0.761	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24814736	3R_24814736_SNP [dm3] 3R_28989014_SNP [dm6]	T	C	2.908e^-4	0.761	INTERGENIC
2R	11274155	2R_11274155_SNP [dm3] 2R_15386650_SNP [dm6]	C	T	2.911e^-4	0.761	UTR_3_PRIME SRPK DOWNSTREAM SRPK	TF binding site mE1_TFBS_cad
3L	15685019	3L_15685019_SNP [dm3] 3L_15691919_SNP [dm6]	C	G	2.925e^-4	0.761	UTR_5_PRIME CG34451	TF binding site BDTNP1_TFBS_z
2L	8678264	2L_8678264_SNP [dm3] 2L_8678264_SNP [dm6]	C	T	2.927e^-4	0.761	SYNONYMOUS_CODING CG9287 UPSTREAM tRNA:CR31889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22152907	X_22152907_SNP [dm3] X_22751071_SNP [dm6]	A	T	2.929e^-4	0.761	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3R	16999837	3R_16999837_SNP [dm3] 3R_21174115_SNP [dm6]	A	T	2.932e^-4	0.761	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17492743	2L_17492743_SNP [dm3] 2L_17492743_SNP [dm6]	C	T	2.933e^-4	0.761	UPSTREAM qua INTRON qua
X	22156729	X_22156729_SNP [dm3] X_22754893_SNP [dm6]	C	T	2.936e^-4	0.761	INTRON CR44997	transposable element FlyBase
3L	8404455	3L_8404455_SNP [dm3] 3L_8411355_SNP [dm6]	T	G	2.945e^-4	0.761	UPSTREAM Exo70 INTRON Oseg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	2.945e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10651511	3R_10651511_SNP [dm3] 3R_14825789_SNP [dm6]	C	G	2.946e^-4	0.761	SYNONYMOUS_CODING btsz
3L	17874465	3L_17874465_SNP [dm3] 3L_17881365_SNP [dm6]	C	T	2.954e^-4	0.762	SYNONYMOUS_CODING CG7408
2R	5866880	2R_5866880_SNP [dm3] 2R_9979375_SNP [dm6]	C	T	2.966e^-4	0.763	START_GAINED eve UTR_5_PRIME eve EXON CR43948	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7078093	2R_7078093_SNP [dm3] 2R_11190588_SNP [dm6]	G	A	2.970e^-4	0.763	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	5141483	2L_5141483_SNP [dm3] 2L_5141483_SNP [dm6]	C	T	2.972e^-4	0.763	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	2.974e^-4	0.763	INTERGENIC
2R	2453327	2R_2453327_SNP [dm3] 2R_6565822_SNP [dm6]	G	T	2.979e^-4	0.763	INTRON jing
3L	18197284	3L_18197284_SNP [dm3] 3L_18204184_SNP [dm6]	C	G	2.983e^-4	0.763	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
X	2774761	X_2774761_SNP [dm3] X_2880728_SNP [dm6]	G	C	2.994e^-4	0.765	INTRON kirre	TF binding site mE1_TFBS_chinmo
2R	17014330	2R_17014330_SNP [dm3] 2R_21126825_SNP [dm6]	C	T	3.012e^-4	0.766	SYNONYMOUS_CODING CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	6863736	2R_6863736_SNP [dm3] 2R_10976231_SNP [dm6]	C	A	3.021e^-4	0.766	INTERGENIC
2L	8430755	2L_8430755_SNP [dm3] 2L_8430755_SNP [dm6]	C	T	3.026e^-4	0.766	UTR_3_PRIME Akap200 DOWNSTREAM grk & 1 other
2R	19327390	2R_19327390_SNP [dm3] 2R_23439867_SNP [dm6]	C	T	3.031e^-4	0.766	DOWNSTREAM Or59a INTERGENIC
2L	17021966	2L_17021966_SNP [dm3] 2L_17021966_SNP [dm6]	T	G	3.039e^-4	0.766	INTERGENIC
2R	11284704	2R_11284704_DEL [dm3] 2R_15397199_DEL [dm6]	TACTTAAACCCGATGT...	T	3.058e^-4	0.766	INTERGENIC
X	6116832	X_6116832_SNP [dm3] X_6222799_SNP [dm6]	G	C	3.065e^-4	0.766	DOWNSTREAM sqh & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	14901779	2L_14901779_SNP [dm3] 2L_14901779_SNP [dm6]	G	A	3.074e^-4	0.766	INTERGENIC
3L	10715224	3L_10715224_SNP [dm3] 3L_10722124_SNP [dm6]	T	A	3.079e^-4	0.766	INTERGENIC
2R	11276666	2R_11276666_SNP [dm3] 2R_15389161_SNP [dm6]	G	A	3.081e^-4	0.766	INTERGENIC
2R	3130163	2R_3130163_SNP [dm3] 2R_7242658_SNP [dm6]	G	A	3.084e^-4	0.766	DOWNSTREAM Ady43A INTERGENIC
2L	13416964	2L_13416964_SNP [dm3] 2L_13416964_SNP [dm6]	G	C	3.085e^-4	0.766	INTRON CG43850 & 1 other
2R	7173267	2R_7173267_SNP [dm3] 2R_11285762_SNP [dm6]	T	G	3.090e^-4	0.766	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
2L	8150662	2L_8150662_SNP [dm3] 2L_8150662_SNP [dm6]	C	T	3.093e^-4	0.766	INTRON CG8552 & 1 other
2R	3123024	2R_3123024_SNP [dm3] 2R_7235519_SNP [dm6]	C	G	3.099e^-4	0.766	UPSTREAM Or43a INTERGENIC
X	16828580	X_16828580_SNP [dm3] X_16934547_SNP [dm6]	A	T	3.102e^-4	0.766	INTRON CG4928	TF binding site mE1_TFBS_chinmo
3L	15721324	3L_15721324_SNP [dm3] 3L_15728224_SNP [dm6]	T	C	3.104e^-4	0.766	UTR_5_PRIME comm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	18197275	3L_18197275_SNP [dm3] 3L_18204175_SNP [dm6]	G	C	3.110e^-4	0.766	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
X	14440512	X_14440512_SNP [dm3] X_14546479_SNP [dm6]	G	T	3.114e^-4	0.766	INTERGENIC
X	16726852	X_16726852_SNP [dm3] X_16832819_SNP [dm6]	A	C	3.115e^-4	0.766	INTRON CG13004
3R	23997363	3R_23997363_SNP [dm3] 3R_28171641_SNP [dm6]	G	T	3.120e^-4	0.766	INTRON CG34354
X	11730301	X_11730301_SNP [dm3] X_11836268_SNP [dm6]	C	T	3.126e^-4	0.766	UTR_3_PRIME rudhira DOWNSTREAM rudhira
3R	5551616	3R_5551616_SNP [dm3] 3R_9725894_SNP [dm6]	C	T	3.131e^-4	0.766	UPSTREAM hyd DOWNSTREAM FoxP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2389768	2L_2389768_SNP [dm3] 2L_2389768_SNP [dm6]	C	G	3.136e^-4	0.766	UTR_3_PRIME CG43750 DOWNSTREAM CG43750
2R	16291620	2R_16291620_SNP [dm3] 2R_20404115_SNP [dm6]	A	G	3.148e^-4	0.766	INTERGENIC
2L	16336302	2L_16336302_SNP [dm3] 2L_16336302_SNP [dm6]	G	T	3.154e^-4	0.766	SYNONYMOUS_CODING CG31817
3L	18013969	3L_18013969_SNP [dm3] 3L_18020869_SNP [dm6]	T	G	3.161e^-4	0.766	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	16118577	3L_16118577_SNP [dm3] 3L_16125477_SNP [dm6]	C	T	3.163e^-4	0.766	NON_SYNONYMOUS_CODING CG12272 DOWNSTREAM Pgm
3L	3705475	3L_3705475_SNP [dm3] 3L_3705475_SNP [dm6]	G	A	3.169e^-4	0.766	INTERGENIC
2R	4936541	2R_4936541_SNP [dm3] 2R_9049036_SNP [dm6]	C	T	3.169e^-4	0.766	INTRON CG13743	TF binding site mE1_TFBS_chinmo
2R	17385802	2R_17385802_SNP [dm3] 2R_21498297_SNP [dm6]	C	T	3.185e^-4	0.766	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7350537	3L_7350537_SNP [dm3] 3L_7357437_SNP [dm6]	G	C	3.189e^-4	0.766	UTR_3_PRIME pst UPSTREAM CTCF
2L	4797824	2L_4797824_SNP [dm3] 2L_4797824_SNP [dm6]	A	T	3.189e^-4	0.766	INTRON Clect27
3R	5208045	3R_5208045_SNP [dm3] 3R_9382323_SNP [dm6]	C	T	3.194e^-4	0.766	INTRON FER
2L	6792694	2L_6792694_SNP [dm3] 2L_6792694_SNP [dm6]	T	G	3.199e^-4	0.766	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	7502872	X_7502872_SNP [dm3] X_7608839_SNP [dm6]	C	T	3.207e^-4	0.766	UPSTREAM ct INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	7117324	X_7117324_SNP [dm3] X_7223291_SNP [dm6]	A	G	3.210e^-4	0.766	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da
2R	10854941	2R_10854941_SNP [dm3] 2R_14967436_SNP [dm6]	T	C	3.210e^-4	0.766	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15089575	X_15089575_SNP [dm3] X_15195542_SNP [dm6]	G	C	3.212e^-4	0.766	INTERGENIC
3L	8418277	3L_8418277_DEL [dm3] 3L_8425177_DEL [dm6]	ACCACCAGCA	A	3.220e^-4	0.766	UTR_5_PRIME Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	18050737	2R_18050737_SNP [dm3] 2R_22163232_SNP [dm6]	A	G	3.224e^-4	0.766	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2L	8432828	2L_8432828_SNP [dm3] 2L_8432828_SNP [dm6]	A	G	3.235e^-4	0.766	INTRON grk
2L	12512137	2L_12512137_SNP [dm3] 2L_12512137_SNP [dm6]	G	C	3.246e^-4	0.766	INTRON bun
3L	788514	3L_788514_SNP [dm3] 3L_788514_SNP [dm6]	C	T	3.251e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	16874214	2R_16874214_DEL [dm3] 2R_20986709_DEL [dm6]	GTGCTTAATG	G	3.254e^-4	0.766	UPSTREAM CG15651 DOWNSTREAM CG3216 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14572475	2R_14572475_SNP [dm3] 2R_18684970_SNP [dm6]	G	C	3.256e^-4	0.766	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
2R	16139128	2R_16139128_SNP [dm3] 2R_20251623_SNP [dm6]	C	T	3.262e^-4	0.766	INTRON CG9864
2R	15085870	2R_15085870_SNP [dm3] 2R_19198365_SNP [dm6]	C	A	3.262e^-4	0.766	INTRON hppy
3L	10368134	3L_10368134_SNP [dm3] 3L_10375034_SNP [dm6]	A	G	3.266e^-4	0.766	INTERGENIC
3R	19697351	3R_19697351_SNP [dm3] 3R_23871629_SNP [dm6]	C	A	3.270e^-4	0.766	INTRON Pli
3R	23489760	3R_23489760_SNP [dm3] 3R_27664038_SNP [dm6]	A	T	3.273e^-4	0.766	INTRON unc80	TF binding site mE1_TFBS_inv
3R	22413435	3R_22413435_SNP [dm3] 3R_26587713_SNP [dm6]	C	A	3.278e^-4	0.766	UTR_3_PRIME scrib INTRON scrib
3L	18197278	3L_18197278_SNP [dm3] 3L_18204178_SNP [dm6]	A	T	3.279e^-4	0.766	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18591771	3R_18591771_SNP [dm3] 3R_22766049_SNP [dm6]	G	C	3.287e^-4	0.766	NON_SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
X	21911763	X_21911763_SNP [dm3] X_22509927_SNP [dm6]	T	A	3.287e^-4	0.766	INTERGENIC	transposable element FlyBase
X	15405574	X_15405574_INS [dm3] X_15511541_INS [dm6]	A	AA	3.288e^-4	0.766	UTR_3_PRIME Ac13E DOWNSTREAM Gmap
2L	6764482	2L_6764482_SNP [dm3] 2L_6764482_SNP [dm6]	T	G	3.290e^-4	0.766	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
X	9313012	X_9313012_SNP [dm3] X_9418979_SNP [dm6]	G	A	3.295e^-4	0.766	INTRON mgl
3L	2688583	3L_2688583_SNP [dm3] 3L_2688583_SNP [dm6]	A	C	3.297e^-4	0.766	INTRON Fife
X	18376951	X_18376951_DEL [dm3] X_18482918_DEL [dm6]	AGTA	A	3.298e^-4	0.766	INTRON Hayan
2L	8917150	2L_8917150_INS [dm3] 2L_8917150_INS [dm6]	A	ATAAA	3.305e^-4	0.766	INTRON CG34398
2L	7454125	2L_7454125_SNP [dm3] 2L_7454125_SNP [dm6]	C	G	3.308e^-4	0.766	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
X	14817533	X_14817533_SNP [dm3] X_14923500_SNP [dm6]	G	A	3.309e^-4	0.766	UPSTREAM CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15842793	2L_15842793_SNP [dm3] 2L_15842793_SNP [dm6]	A	C	3.310e^-4	0.766	INTERGENIC
X	5428601	X_5428601_SNP [dm3] X_5534568_SNP [dm6]	C	G	3.315e^-4	0.766	INTRON Vsx2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16089150	2R_16089150_SNP [dm3] 2R_20201645_SNP [dm6]	A	C	3.316e^-4	0.766	INTERGENIC
2R	18254949	2R_18254949_SNP [dm3] 2R_22367444_SNP [dm6]	A	G	3.325e^-4	0.766	INTRON Liprin-gamma
2R	18254972	2R_18254972_SNP [dm3] 2R_22367467_SNP [dm6]	C	T	3.325e^-4	0.766	INTRON Liprin-gamma
3R	16831920	3R_16831920_SNP [dm3] 3R_21006198_SNP [dm6]	G	C	3.326e^-4	0.766	SYNONYMOUS_CODING CG10827 INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13116091	3L_13116091_SNP [dm3] 3L_13122991_SNP [dm6]	A	G	3.329e^-4	0.766	INTERGENIC
3L	18725420	3L_18725420_SNP [dm3] 3L_18732320_SNP [dm6]	C	T	3.338e^-4	0.766	INTERGENIC
3R	13143647	3R_13143647_SNP [dm3] 3R_17317925_SNP [dm6]	G	C	3.338e^-4	0.766	INTERGENIC
3R	18820775	3R_18820775_SNP [dm3] 3R_22995053_SNP [dm6]	G	A	3.338e^-4	0.766	INTRON Nha2
3R	23934490	3R_23934490_SNP [dm3] 3R_28108768_SNP [dm6]	C	T	3.342e^-4	0.766	INTERGENIC
2L	17492730	2L_17492730_SNP [dm3] 2L_17492730_SNP [dm6]	C	G	3.348e^-4	0.766	UPSTREAM qua INTRON qua
2L	20113714	2L_20113714_SNP [dm3] 2L_20113714_SNP [dm6]	T	G	3.349e^-4	0.766	INTERGENIC	transposable element FlyBase
2L	10516623	2L_10516623_SNP [dm3] 2L_10516623_SNP [dm6]	T	A	3.362e^-4	0.766	SYNONYMOUS_CODING Fatp UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7935698	2L_7935698_SNP [dm3] 2L_7935698_SNP [dm6]	A	C	3.365e^-4	0.766	INTRON Snoo
3R	9271036	3R_9271036_SNP [dm3] 3R_13445314_SNP [dm6]	C	G	3.371e^-4	0.766	INTERGENIC
3L	17548162	3L_17548162_SNP [dm3] 3L_17555062_SNP [dm6]	T	C	3.372e^-4	0.766	SYNONYMOUS_CODING CycT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13866951	2L_13866951_SNP [dm3] 2L_13866951_SNP [dm6]	T	G	3.375e^-4	0.766	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4657920	3L_4657920_SNP [dm3] 3L_4657920_SNP [dm6]	T	G	3.376e^-4	0.766	INTRON axo	TF binding site mE1_TFBS_inv
2L	2835876	2L_2835876_SNP [dm3] 2L_2835876_SNP [dm6]	A	T	3.377e^-4	0.766	DOWNSTREAM CG3119 INTRON CG3119
3L	21228926	3L_21228926_DEL [dm3] 3L_21235826_DEL [dm6]	AA	A	3.388e^-4	0.766	INTRON Eip78C	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	10884707	2R_10884707_SNP [dm3] 2R_14997202_SNP [dm6]	A	G	3.394e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_inv
3L	20402759	3L_20402759_SNP [dm3] 3L_20409659_SNP [dm6]	G	A	3.396e^-4	0.766	INTRON CG13248	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4283888	2L_4283888_SNP [dm3] 2L_4283888_SNP [dm6]	A	T	3.397e^-4	0.766	UPSTREAM tutl INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	12790394	2L_12790394_SNP [dm3] 2L_12790394_SNP [dm6]	A	T	3.405e^-4	0.766	INTERGENIC
2R	18067506	2R_18067506_SNP [dm3] 2R_22180001_SNP [dm6]	T	C	3.409e^-4	0.766	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3140225	2R_3140225_SNP [dm3] 2R_7252720_SNP [dm6]	C	T	3.415e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5547922	3R_5547922_SNP [dm3] 3R_9722200_SNP [dm6]	G	A	3.417e^-4	0.766	SYNONYMOUS_CODING hyd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5694255	3R_5694255_SNP [dm3] 3R_9868533_SNP [dm6]	C	A	3.417e^-4	0.766	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	9507749	3L_9507749_SNP [dm3] 3L_9514649_SNP [dm6]	A	T	3.422e^-4	0.766	SYNONYMOUS_CODING CG33700 UPSTREAM CR33701
3R	11299058	3R_11299058_SNP [dm3] 3R_15473336_SNP [dm6]	A	G	3.422e^-4	0.766	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	2023976	2L_2023976_SNP [dm3] 2L_2023976_SNP [dm6]	T	G	3.426e^-4	0.766	UPSTREAM CG4238 INTRON CG4238
2R	1884911	2R_1884911_DEL [dm3] 2R_5997406_DEL [dm6]	TT	T	3.427e^-4	0.766	INTRON Src42A
X	17560727	X_17560727_SNP [dm3] X_17666694_SNP [dm6]	C	T	3.428e^-4	0.766	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7016094	2L_7016094_SNP [dm3] 2L_7016094_SNP [dm6]	G	A	3.428e^-4	0.766	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9467371	2L_9467371_SNP [dm3] 2L_9467371_SNP [dm6]	C	T	3.430e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	929383	2L_929383_SNP [dm3] 2L_929383_SNP [dm6]	G	T	3.436e^-4	0.766	INTRON CG4341
X	5611266	X_5611266_SNP [dm3] X_5717233_SNP [dm6]	A	C	3.438e^-4	0.766	INTRON CG33080
3L	8824131	3L_8824131_SNP [dm3] 3L_8831031_SNP [dm6]	G	T	3.443e^-4	0.766	INTRON dally	TF binding site BDTNP1_TFBS_dl
3L	7748606	3L_7748606_SNP [dm3] 3L_7755506_SNP [dm6]	T	G	3.446e^-4	0.766	DOWNSTREAM CG7409 INTRON CG32373
3L	7748608	3L_7748608_SNP [dm3] 3L_7755508_SNP [dm6]	G	A	3.446e^-4	0.766	DOWNSTREAM CG7409 INTRON CG32373
3L	8037749	3L_8037749_SNP [dm3] 3L_8044649_SNP [dm6]	G	T	3.447e^-4	0.766	INTRON nmo
3R	9271035	3R_9271035_SNP [dm3] 3R_13445313_SNP [dm6]	C	G	3.447e^-4	0.766	INTERGENIC
X	18487097	X_18487097_SNP [dm3] X_18593064_SNP [dm6]	A	T	3.447e^-4	0.766	INTERGENIC
2L	8283355	2L_8283355_SNP [dm3] 2L_8283355_SNP [dm6]	C	A	3.453e^-4	0.766	INTRON Btk29A
2L	6872808	2L_6872808_SNP [dm3] 2L_6872808_SNP [dm6]	G	C	3.458e^-4	0.766	UPSTREAM CR44915 EXON CR44914
3L	602332	3L_602332_SNP [dm3] 3L_602332_SNP [dm6]	T	G	3.461e^-4	0.766	INTRON CG13893
3L	15879517	3L_15879517_SNP [dm3] 3L_15886417_SNP [dm6]	C	A	3.463e^-4	0.766	UPSTREAM CR44050 INTRON pHCl
2R	19185694	2R_19185694_DEL [dm3] 2R_23298171_DEL [dm6]	GGGC	G	3.463e^-4	0.766	INTERGENIC
2R	13509067	2R_13509067_SNP [dm3] 2R_17621562_SNP [dm6]	G	A	3.492e^-4	0.766	INTRON CG10936
2R	17014807	2R_17014807_SNP [dm3] 2R_21127302_SNP [dm6]	G	A	3.509e^-4	0.766	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	1073525	2L_1073525_SNP [dm3] 2L_1073525_SNP [dm6]	T	G	3.511e^-4	0.766	INTRON S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16978830	3R_16978830_INS [dm3] 3R_21153108_INS [dm6]	T	TTG	3.512e^-4	0.766	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3650452	3L_3650452_SNP [dm3] 3L_3650452_SNP [dm6]	T	C	3.521e^-4	0.766	INTRON dar1
2R	19505939	2R_19505939_SNP [dm3] 2R_23618416_SNP [dm6]	C	A	3.523e^-4	0.766	INTERGENIC
3R	19827735	3R_19827735_SNP [dm3] 3R_24002013_SNP [dm6]	G	C	3.524e^-4	0.766	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15888059	3L_15888059_SNP [dm3] 3L_15894959_SNP [dm6]	C	A	3.524e^-4	0.766	INTRON pHCl
3L	17364409	3L_17364409_SNP [dm3] 3L_17371309_SNP [dm6]	A	G	3.525e^-4	0.766	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19400635	2R_19400635_SNP [dm3] 2R_23513112_SNP [dm6]	G	A	3.525e^-4	0.766	UPSTREAM CG3906 INTERGENIC
2R	16211857	2R_16211857_SNP [dm3] 2R_20324352_SNP [dm6]	T	C	3.526e^-4	0.766	SYNONYMOUS_CODING CG8920
2R	3121229	2R_3121229_SNP [dm3] 2R_7233724_SNP [dm6]	C	T	3.527e^-4	0.766	INTRON Or43a	TF binding site mE1_TFBS_chinmo
2L	20387692	2L_20387692_SNP [dm3] 2L_20387692_SNP [dm6]	C	T	3.533e^-4	0.766	INTRON CG10947	TF binding site mE1_TFBS_cad
2R	14098812	2R_14098812_SNP [dm3] 2R_18211307_SNP [dm6]	G	A	3.536e^-4	0.766	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12455604	2R_12455604_SNP [dm3] 2R_16568099_SNP [dm6]	C	G	3.545e^-4	0.766	INTRON CG4945	TF binding site mE1_TFBS_cad
3L	5483961	3L_5483961_SNP [dm3] 3L_5490861_SNP [dm6]	A	G	3.546e^-4	0.766	INTERGENIC
2R	3121822	2R_3121822_SNP [dm3] 2R_7234317_SNP [dm6]	A	G	3.547e^-4	0.766	INTRON Or43a	TF binding site mE1_TFBS_chinmo
2R	13808578	2R_13808578_SNP [dm3] 2R_17921073_SNP [dm6]	C	T	3.549e^-4	0.766	INTRON Elk
2L	5145188	2L_5145188_SNP [dm3] 2L_5145188_SNP [dm6]	T	G	3.552e^-4	0.766	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18197280	3L_18197280_SNP [dm3] 3L_18204180_SNP [dm6]	A	T	3.553e^-4	0.766	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6531872	3R_6531872_SNP [dm3] 3R_10706150_SNP [dm6]	T	A	3.555e^-4	0.766	SYNONYMOUS_CODING CG31467 UPSTREAM CG14684	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19227052	2R_19227052_SNP [dm3] 2R_23339529_SNP [dm6]	T	G	3.559e^-4	0.766	INTERGENIC
3L	10117380	3L_10117380_SNP [dm3] 3L_10124280_SNP [dm6]	G	T	3.561e^-4	0.766	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14044163	3L_14044163_SNP [dm3] 3L_14051063_SNP [dm6]	T	A	3.564e^-4	0.766	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14044167	3L_14044167_SNP [dm3] 3L_14051067_SNP [dm6]	G	A	3.564e^-4	0.766	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14044173	3L_14044173_SNP [dm3] 3L_14051073_SNP [dm6]	T	A	3.564e^-4	0.766	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2R	9516042	2R_9516042_SNP [dm3] 2R_13628537_SNP [dm6]	G	C	3.576e^-4	0.767	INTRON fas
3R	18416604	3R_18416604_SNP [dm3] 3R_22590882_SNP [dm6]	T	C	3.577e^-4	0.767	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20045610	X_20045610_SNP [dm3] X_20151577_SNP [dm6]	C	T	3.592e^-4	0.768	INTRON CG9572
2R	3107265	2R_3107265_SNP [dm3] 2R_7219760_SNP [dm6]	C	G	3.596e^-4	0.768	INTRON pk
3L	7608099	3L_7608099_SNP [dm3] 3L_7614999_SNP [dm6]	C	G	3.599e^-4	0.768	INTRON CG33275
2L	8899611	2L_8899611_SNP [dm3] 2L_8899611_SNP [dm6]	C	T	3.600e^-4	0.768	START_GAINED CG34398 UTR_5_PRIME CG34398 INTRON CG34398
2R	3093737	2R_3093737_SNP [dm3] 2R_7206232_SNP [dm6]	T	A	3.615e^-4	0.768	INTRON pk
3L	18197155	3L_18197155_SNP [dm3] 3L_18204055_SNP [dm6]	T	C	3.624e^-4	0.768	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	9868452	X_9868452_SNP [dm3] X_9974419_SNP [dm6]	T	A	3.626e^-4	0.768	INTRON CG43386
2L	9453225	2L_9453225_SNP [dm3] 2L_9453225_SNP [dm6]	C	T	3.627e^-4	0.768	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13478687	X_13478687_SNP [dm3] X_13584654_SNP [dm6]	G	C	3.628e^-4	0.768	INTRON Tango13
3L	10270636	3L_10270636_SNP [dm3] 3L_10277536_SNP [dm6]	C	T	3.635e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	13115541	3L_13115541_SNP [dm3] 3L_13122441_SNP [dm6]	G	T	3.641e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	22146627	X_22146627_SNP [dm3] X_22744791_SNP [dm6]	G	A	3.660e^-4	0.768	INTRON CR44997
2R	9714823	2R_9714823_DEL [dm3] 2R_13827318_DEL [dm6]	CCC	C	3.665e^-4	0.768	UTR_5_PRIME CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18255068	2R_18255068_SNP [dm3] 2R_22367563_SNP [dm6]	C	A	3.665e^-4	0.768	INTRON Liprin-gamma
2R	18255069	2R_18255069_SNP [dm3] 2R_22367564_SNP [dm6]	G	A	3.665e^-4	0.768	INTRON Liprin-gamma
2R	7158535	2R_7158535_INS [dm3] 2R_11271030_INS [dm6]	T	TT	3.667e^-4	0.768	INTRON Cpr47Ef
3L	15879512	3L_15879512_SNP [dm3] 3L_15886412_SNP [dm6]	T	C	3.675e^-4	0.768	UPSTREAM CR44050 INTRON pHCl
3R	14302112	3R_14302112_SNP [dm3] 3R_18476390_SNP [dm6]	A	G	3.677e^-4	0.768	INTRON fru
2L	17492187	2L_17492187_SNP [dm3] 2L_17492187_SNP [dm6]	C	T	3.685e^-4	0.768	UTR_5_PRIME qua INTRON qua
3L	13114626	3L_13114626_SNP [dm3] 3L_13121526_SNP [dm6]	G	A	3.685e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	14638633	X_14638633_SNP [dm3] X_14744600_SNP [dm6]	T	A	3.694e^-4	0.768	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	3136687	2R_3136687_SNP [dm3] 2R_7249182_SNP [dm6]	C	A	3.695e^-4	0.768	UTR_5_PRIME Gadd45	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	11231731	X_11231731_SNP [dm3] X_11337698_SNP [dm6]	A	G	3.696e^-4	0.768	SPLICE_SITE_REGION Kap3 SYNONYMOUS_CODING Kap3
2R	16281568	2R_16281568_SNP [dm3] 2R_20394063_SNP [dm6]	T	G	3.701e^-4	0.768	INTERGENIC
2R	10858094	2R_10858094_SNP [dm3] 2R_14970589_SNP [dm6]	G	T	3.704e^-4	0.768	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11045747	2R_11045747_SNP [dm3] 2R_15158242_SNP [dm6]	C	A	3.704e^-4	0.768	DOWNSTREAM CR43831 INTRON igl
X	7500413	X_7500413_SNP [dm3] X_7606380_SNP [dm6]	T	C	3.709e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3282699	X_3282699_SNP [dm3] X_3388666_SNP [dm6]	C	T	3.711e^-4	0.768	UTR_3_PRIME dm & 1 other INTRON CR44999
X	1317091	X_1317091_SNP [dm3] X_1423058_SNP [dm6]	A	G	3.721e^-4	0.768	INTRON futsch
2L	1138979	2L_1138979_SNP [dm3] 2L_1138979_SNP [dm6]	T	C	3.728e^-4	0.768	SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14680013	X_14680013_INS [dm3] X_14785980_INS [dm6]	C	GT	3.731e^-4	0.768	UPSTREAM CR45522 INTRON Ag5r
X	5065561	X_5065561_DEL [dm3] X_5171528_DEL [dm6]	GCAGTTGGTTG...	G	3.737e^-4	0.768	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_twi
X	11231713	X_11231713_SNP [dm3] X_11337680_SNP [dm6]	A	T	3.737e^-4	0.768	INTRON Kap3
2R	17973388	2R_17973388_SNP [dm3] 2R_22085883_SNP [dm6]	C	T	3.738e^-4	0.768	UTR_3_PRIME CG13502 DOWNSTREAM Synj
2L	10495724	2L_10495724_SNP [dm3] 2L_10495724_SNP [dm6]	T	C	3.740e^-4	0.768	INTRON Myo31DF
2R	15016269	2R_15016269_DEL [dm3] 2R_19128764_DEL [dm6]	TTGCTATCT	T	3.742e^-4	0.768	UPSTREAM botv INTRON CG15117
2R	16915817	2R_16915817_SNP [dm3] 2R_21028312_SNP [dm6]	G	A	3.749e^-4	0.768	DOWNSTREAM CR45148 INTERGENIC
X	21280375	X_21280375_SNP [dm3] X_21409348_SNP [dm6]	T	C	3.754e^-4	0.768	DOWNSTREAM CR45003 INTERGENIC
3R	11352772	3R_11352772_SNP [dm3] 3R_15527050_SNP [dm6]	T	C	3.758e^-4	0.768	INTERGENIC
3L	18169215	3L_18169215_SNP [dm3] 3L_18176115_SNP [dm6]	G	C	3.765e^-4	0.768	INTRON W	TF binding site BDTNP1_TFBS_twi
2L	9593617	2L_9593617_SNP [dm3] 2L_9593617_SNP [dm6]	A	C	3.768e^-4	0.768	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	9593623	2L_9593623_SNP [dm3] 2L_9593623_SNP [dm6]	T	C	3.768e^-4	0.768	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	15212896	3L_15212896_DEL [dm3] 3L_15219796_DEL [dm6]	AGTTTGTAATTCTAATGTCC...	A	3.770e^-4	0.768	INTERGENIC
2R	18331331	2R_18331331_SNP [dm3] 2R_22443826_SNP [dm6]	G	A	3.772e^-4	0.768	INTERGENIC
2R	10853524	2R_10853524_SNP [dm3] 2R_14966019_SNP [dm6]	C	A	3.776e^-4	0.768	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	10598844	3R_10598844_SNP [dm3] 3R_14773122_SNP [dm6]	C	T	3.780e^-4	0.768	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14038762	3L_14038762_SNP [dm3] 3L_14045662_SNP [dm6]	C	T	3.782e^-4	0.768	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3R	13905809	3R_13905809_SNP [dm3] 3R_18080087_SNP [dm6]	A	C	3.784e^-4	0.768	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7304922	3L_7304922_SNP [dm3] 3L_7311822_SNP [dm6]	T	A	3.787e^-4	0.768	INTRON unc-13-4A
3R	13906116	3R_13906116_SNP [dm3] 3R_18080394_SNP [dm6]	T	A	3.797e^-4	0.768	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14734684	2R_14734684_SNP [dm3] 2R_18847179_SNP [dm6]	G	T	3.798e^-4	0.768	SYNONYMOUS_CODING CG15100 UPSTREAM CG15099	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1317372	X_1317372_SNP [dm3] X_1423339_SNP [dm6]	C	T	3.806e^-4	0.768	INTRON futsch
2L	20702498	2L_20702498_SNP [dm3] 2L_20702498_SNP [dm6]	C	T	3.807e^-4	0.768	INTRON Hr38
3L	7209234	3L_7209234_SNP [dm3] 3L_7216134_SNP [dm6]	C	T	3.809e^-4	0.768	INTERGENIC
2R	3115503	2R_3115503_SNP [dm3] 2R_7227998_SNP [dm6]	G	A	3.812e^-4	0.768	INTERGENIC
2L	5149610	2L_5149610_SNP [dm3] 2L_5149610_SNP [dm6]	G	T	3.813e^-4	0.768	INTRON Msp300
X	11231132	X_11231132_SNP [dm3] X_11337099_SNP [dm6]	G	C	3.816e^-4	0.768	INTRON Kap3
2R	14494819	2R_14494819_SNP [dm3] 2R_18607314_SNP [dm6]	T	A	3.817e^-4	0.768	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	3282698	X_3282698_SNP [dm3] X_3388665_SNP [dm6]	G	A	3.831e^-4	0.769	UTR_3_PRIME dm & 1 other INTRON CR44999
3R	5493989	3R_5493989_SNP [dm3] 3R_9668267_SNP [dm6]	G	A	3.839e^-4	0.769	INTRON CG9492
3L	11864405	3L_11864405_INS [dm3] 3L_11871305_INS [dm6]	C	CAGTTGAGTT	3.842e^-4	0.769	UPSTREAM CG5906 INTRON CG44837
3L	11864710	3L_11864710_SNP [dm3] 3L_11871610_SNP [dm6]	C	G	3.842e^-4	0.769	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11864759	3L_11864759_SNP [dm3] 3L_11871659_SNP [dm6]	G	A	3.842e^-4	0.769	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18025311	2R_18025311_SNP [dm3] 2R_22137806_SNP [dm6]	A	G	3.847e^-4	0.769	UTR_5_PRIME a INTRON a
3R	15672411	3R_15672411_SNP [dm3] 3R_19846689_SNP [dm6]	A	T	3.849e^-4	0.769	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16780265	3L_16780265_SNP [dm3] 3L_16787165_SNP [dm6]	C	T	3.875e^-4	0.769	UPSTREAM Int6 DOWNSTREAM CG9674 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8900826	3L_8900826_SNP [dm3] 3L_8907726_SNP [dm6]	T	A	3.876e^-4	0.769	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
2L	11389590	2L_11389590_INS [dm3] 2L_11389590_INS [dm6]	T	CC	3.877e^-4	0.769	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	13128642	2L_13128642_SNP [dm3] 2L_13128642_SNP [dm6]	A	G	3.880e^-4	0.769	INTERGENIC
2L	8432515	2L_8432515_SNP [dm3] 2L_8432515_SNP [dm6]	T	C	3.885e^-4	0.769	INTRON grk	TF binding site mE1_TFBS_cad
3L	5589297	3L_5589297_SNP [dm3] 3L_5596197_SNP [dm6]	T	C	3.890e^-4	0.769	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9121140	2L_9121140_SNP [dm3] 2L_9121140_SNP [dm6]	A	T	3.896e^-4	0.769	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	14680020	X_14680020_SNP [dm3] X_14785987_SNP [dm6]	T	A	3.897e^-4	0.769	UPSTREAM CR45522 INTRON Ag5r
2L	9593939	2L_9593939_SNP [dm3] 2L_9593939_SNP [dm6]	A	G	3.901e^-4	0.769	INTERGENIC	regulatory region REDfly_CRMs
2L	20023008	2L_20023008_SNP [dm3] 2L_20023008_SNP [dm6]	C	A	3.902e^-4	0.769	INTERGENIC
2L	16503095	2L_16503095_SNP [dm3] 2L_16503095_SNP [dm6]	G	C	3.913e^-4	0.769	INTRON Tpr2
3R	15673109	3R_15673109_SNP [dm3] 3R_19847387_SNP [dm6]	T	G	3.914e^-4	0.769	NON_SYNONYMOUS_CODING CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12790400	2L_12790400_SNP [dm3] 2L_12790400_SNP [dm6]	C	A	3.917e^-4	0.769	INTERGENIC
3R	6550478	3R_6550478_SNP [dm3] 3R_10724756_SNP [dm6]	T	A	3.920e^-4	0.769	INTERGENIC
3L	13246982	3L_13246982_SNP [dm3] 3L_13253882_SNP [dm6]	A	G	3.920e^-4	0.769	INTRON caps	TF binding site mE1_TFBS_inv
2L	3187576	2L_3187576_SNP [dm3] 2L_3187576_SNP [dm6]	G	T	3.924e^-4	0.769	INTRON CG34393	TF binding site mE1_TFBS_inv
2R	7791396	2R_7791396_SNP [dm3] 2R_11903891_SNP [dm6]	C	G	3.924e^-4	0.769	START_GAINED MCPH1 UTR_5_PRIME MCPH1 UPSTREAM MCPH1 DOWNSTREAM CG13183	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	15705537	3L_15705537_SNP [dm3] 3L_15712437_SNP [dm6]	T	C	3.926e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	10984785	2R_10984785_SNP [dm3] 2R_15097280_SNP [dm6]	T	A	3.935e^-4	0.769	INTERGENIC
3R	11137112	3R_11137112_SNP [dm3] 3R_15311390_SNP [dm6]	T	A	3.941e^-4	0.769	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
3L	18199758	3L_18199758_SNP [dm3] 3L_18206658_SNP [dm6]	A	G	3.946e^-4	0.769	INTERGENIC
2R	13746404	2R_13746404_SNP [dm3] 2R_17858899_SNP [dm6]	A	C	3.953e^-4	0.769	INTRON olf186-F
3R	25258227	3R_25258227_SNP [dm3] 3R_29432505_SNP [dm6]	C	G	3.963e^-4	0.769	INTRON Ptp99A
3L	17366891	3L_17366891_SNP [dm3] 3L_17373791_SNP [dm6]	G	C	3.963e^-4	0.769	NON_SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad
X	6107538	X_6107538_DEL [dm3] X_6213505_DEL [dm6]	AA	A	3.964e^-4	0.769	INTERGENIC
2R	17013369	2R_17013369_SNP [dm3] 2R_21125864_SNP [dm6]	G	C	3.965e^-4	0.769	INTRON CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7927250	2L_7927250_SNP [dm3] 2L_7927250_SNP [dm6]	G	A	3.971e^-4	0.769	INTRON Snoo
2R	17014728	2R_17014728_DEL [dm3] 2R_21127223_DEL [dm6]	ACTTCCTATTAGTGAGAAA...	A	3.972e^-4	0.769	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	2610102	3L_2610102_SNP [dm3] 3L_2610102_SNP [dm6]	T	C	3.973e^-4	0.769	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	14911285	2R_14911285_SNP [dm3] 2R_19023780_SNP [dm6]	T	A	3.978e^-4	0.769	INTRON 5-HT1B	TF binding site mE1_TFBS_cad
X	16282769	X_16282769_SNP [dm3] X_16388736_SNP [dm6]	T	C	3.979e^-4	0.769	DOWNSTREAM TH1 & 1 other INTERGENIC
3R	6550535	3R_6550535_SNP [dm3] 3R_10724813_SNP [dm6]	T	C	3.992e^-4	0.771	INTERGENIC
X	5590879	X_5590879_SNP [dm3] X_5696846_SNP [dm6]	C	T	3.999e^-4	0.771	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_Trl
2L	11146432	2L_11146432_DEL [dm3] 2L_11146432_DEL [dm6]	AGCTA	A	4.000e^-4	0.771	INTRON Gyc32E
2L	15331072	2L_15331072_SNP [dm3] 2L_15331072_SNP [dm6]	T	A	4.027e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9477837	3R_9477837_SNP [dm3] 3R_13652115_SNP [dm6]	C	T	4.039e^-4	0.777	UTR_3_PRIME rin
2L	16435544	2L_16435544_SNP [dm3] 2L_16435544_SNP [dm6]	G	A	4.044e^-4	0.777	INTRON CG5888
2R	16205122	2R_16205122_SNP [dm3] 2R_20317617_SNP [dm6]	A	G	4.054e^-4	0.777	SYNONYMOUS_CODING CG13871 UPSTREAM CG13868	TF binding site mE1_TFBS_cad
X	17175109	X_17175109_SNP [dm3] X_17281076_SNP [dm6]	A	T	4.060e^-4	0.777	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2R	7161662	2R_7161662_SNP [dm3] 2R_11274157_SNP [dm6]	C	A	4.061e^-4	0.777	INTRON TpnC47D
2R	16998729	2R_16998729_SNP [dm3] 2R_21111224_SNP [dm6]	C	T	4.072e^-4	0.777	INTRON ktub
3R	15672961	3R_15672961_SNP [dm3] 3R_19847239_SNP [dm6]	A	T	4.082e^-4	0.777	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	20726313	3L_20726313_SNP [dm3] 3L_20733213_SNP [dm6]	C	A	4.083e^-4	0.777	INTRON CG13252
2R	12364901	2R_12364901_SNP [dm3] 2R_16477396_SNP [dm6]	G	A	4.087e^-4	0.777	INTERGENIC
2R	14782230	2R_14782230_SNP [dm3] 2R_18894725_SNP [dm6]	A	G	4.088e^-4	0.777	INTRON sano
3R	20053010	3R_20053010_SNP [dm3] 3R_24227288_SNP [dm6]	T	C	4.089e^-4	0.777	SYNONYMOUS_CODING CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	2853697	3L_2853697_SNP [dm3] 3L_2853697_SNP [dm6]	C	T	4.090e^-4	0.777	INTRON CG43444
2R	18660097	2R_18660097_SNP [dm3] 2R_22772592_SNP [dm6]	G	C	4.094e^-4	0.777	INTRON CG42260
2R	19231588	2R_19231588_SNP [dm3] 2R_23344065_SNP [dm6]	T	G	4.096e^-4	0.777	NON_SYNONYMOUS_CODING CG3502
2R	8549990	2R_8549990_SNP [dm3] 2R_12662485_SNP [dm6]	G	A	4.113e^-4	0.779	UTR_5_PRIME nemy UPSTREAM nemy INTRON nemy
2R	3114331	2R_3114331_SNP [dm3] 2R_7226826_SNP [dm6]	T	C	4.117e^-4	0.779	INTERGENIC
X	22146287	X_22146287_SNP [dm3] X_22744451_SNP [dm6]	A	G	4.120e^-4	0.779	INTRON CR44997	transposable element FlyBase
2R	18588796	2R_18588796_SNP [dm3] 2R_22701291_SNP [dm6]	A	T	4.131e^-4	0.779	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_kn
2L	13416940	2L_13416940_SNP [dm3] 2L_13416940_SNP [dm6]	A	T	4.132e^-4	0.779	INTRON CG43850 & 1 other
3R	13976372	3R_13976372_SNP [dm3] 3R_18150650_SNP [dm6]	C	T	4.135e^-4	0.779	INTERGENIC
2R	7788189	2R_7788189_SNP [dm3] 2R_11900684_SNP [dm6]	C	T	4.140e^-4	0.779	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17492716	2L_17492716_SNP [dm3] 2L_17492716_SNP [dm6]	A	T	4.140e^-4	0.779	UPSTREAM qua INTRON qua
3L	16786829	3L_16786829_SNP [dm3] 3L_16793729_SNP [dm6]	G	T	4.142e^-4	0.779	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8231830	2L_8231830_SNP [dm3] 2L_8231830_SNP [dm6]	G	A	4.144e^-4	0.779	INTRON Pvr
3R	10406982	3R_10406982_SNP [dm3] 3R_14581260_SNP [dm6]	T	A	4.149e^-4	0.779	INTRON stumps
2L	6629517	2L_6629517_SNP [dm3] 2L_6629517_SNP [dm6]	C	T	4.157e^-4	0.779	INTRON Oatp26F

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.942e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1950 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1130103	3L_1130103_SNP [dm3] 3L_1130103_SNP [dm6]	C	G	2.767e^-6	0.885	INTERGENIC	regulatory region REDfly_CRMs
2R	16291670	2R_16291670_SNP [dm3] 2R_20404165_SNP [dm6]	A	C	3.045e^-6	0.885	INTERGENIC
2L	10499146	2L_10499146_SNP [dm3] 2L_10499146_SNP [dm6]	C	A	4.440e^-6	0.885	INTRON Myo31DF
X	9862504	X_9862504_DEL [dm3] X_9968471_DEL [dm6]	GG	G	4.651e^-6	0.885	INTRON CG43386
3R	15890459	3R_15890459_SNP [dm3] 3R_20064737_SNP [dm6]	A	G	4.850e^-6	0.885	INTERGENIC
2R	18435796	2R_18435796_SNP [dm3] 2R_22548291_SNP [dm6]	T	C	5.185e^-6	0.885	INTRON px
2R	15393241	2R_15393241_SNP [dm3] 2R_19505736_SNP [dm6]	G	T	5.197e^-6	0.885	DOWNSTREAM tRNA:H:56E & 1 other INTERGENIC
2R	18435807	2R_18435807_SNP [dm3] 2R_22548302_SNP [dm6]	G	C	6.356e^-6	0.885	INTRON px
2L	5249156	2L_5249156_SNP [dm3] 2L_5249156_SNP [dm6]	A	G	7.188e^-6	0.885	INTRON tkv	TF binding site mE1_TFBS_cnc
2L	5248547	2L_5248547_SNP [dm3] 2L_5248547_SNP [dm6]	T	A	7.209e^-6	0.885	INTRON tkv
2L	5248520	2L_5248520_SNP [dm3] 2L_5248520_SNP [dm6]	T	C	8.049e^-6	0.885	INTRON tkv
2L	8267089	2L_8267089_SNP [dm3] 2L_8267089_SNP [dm6]	T	C	1.027e^-5	0.885	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	17168831	3R_17168831_SNP [dm3] 3R_21343109_SNP [dm6]	G	A	1.052e^-5	0.885	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6286636	2R_6286636_SNP [dm3] 2R_10399131_SNP [dm6]	A	G	1.095e^-5	0.885	INTRON CG42732
3R	22011352	3R_22011352_SNP [dm3] 3R_26185630_SNP [dm6]	T	C	1.148e^-5	0.885	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 DOWNSTREAM CG31323
2R	19157282	2R_19157282_SNP [dm3] 2R_23269759_SNP [dm6]	T	C	1.160e^-5	0.885	UPSTREAM CG13540 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16181814	X_16181814_SNP [dm3] X_16287781_SNP [dm6]	A	G	1.185e^-5	0.885	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
2R	16291889	2R_16291889_INS [dm3] 2R_20404384_INS [dm6]	A	AA	1.251e^-5	0.885	INTERGENIC
3L	8640660	3L_8640660_SNP [dm3] 3L_8647560_SNP [dm6]	A	G	1.299e^-5	0.885	SYNONYMOUS_CODING Arr2 UPSTREAM CG13305 INTRON Pex7	TF binding site mE1_TFBS_sens
3L	15731852	3L_15731852_SNP [dm3] 3L_15738752_SNP [dm6]	A	G	1.484e^-5	0.885	INTERGENIC
2L	10833101	2L_10833101_SNP [dm3] 2L_10833101_SNP [dm6]	C	T	1.510e^-5	0.885	INTRON Nos
2R	17010894	2R_17010894_SNP [dm3] 2R_21123389_SNP [dm6]	G	T	1.516e^-5	0.885	UTR_3_PRIME ktub DOWNSTREAM CG4050	TF binding site mE1_TFBS_cad
3R	23918569	3R_23918569_SNP [dm3] 3R_28092847_SNP [dm6]	G	A	1.521e^-5	0.885	INTERGENIC	TF binding site mE1_TFBS_inv
X	16181885	X_16181885_SNP [dm3] X_16287852_SNP [dm6]	A	G	1.595e^-5	0.885	UPSTREAM caz DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
X	16161916	X_16161916_SNP [dm3] X_16267883_SNP [dm6]	G	A	1.602e^-5	0.885	INTRON kat80
2L	19925289	2L_19925289_SNP [dm3] 2L_19925289_SNP [dm6]	G	A	1.678e^-5	0.885	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	7216228	2L_7216228_SNP [dm3] 2L_7216228_SNP [dm6]	G	C	1.726e^-5	0.885	INTRON CG13784
X	5455559	X_5455559_SNP [dm3] X_5561526_SNP [dm6]	T	C	1.846e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16161887	X_16161887_SNP [dm3] X_16267854_SNP [dm6]	T	A	1.859e^-5	0.885	SPLICE_SITE_REGION kat80 INTRON kat80
X	16181882	X_16181882_SNP [dm3] X_16287849_SNP [dm6]	T	G	1.881e^-5	0.885	UPSTREAM caz DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
2L	19925300	2L_19925300_SNP [dm3] 2L_19925300_SNP [dm6]	C	A	1.964e^-5	0.885	INTRON sick	TF binding site mE1_TFBS_chinmo
3R	12807041	3R_12807041_DEL [dm3] 3R_16981319_DEL [dm6]	CATAGTTC	C	1.987e^-5	0.885	INTRON Ahcy89E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8010994	2L_8010994_SNP [dm3] 2L_8010994_SNP [dm6]	G	A	2.070e^-5	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	16291620	2R_16291620_SNP [dm3] 2R_20404115_SNP [dm6]	A	G	2.086e^-5	0.885	INTERGENIC
2R	20887334	2R_20887334_DEL [dm3] 2R_24999811_DEL [dm6]	AGCGTCGTGAAATTCCCGCT...	A	2.203e^-5	0.885	INTRON zip	TF binding site mE1_TFBS_inv
2R	12814659	2R_12814659_SNP [dm3] 2R_16927154_SNP [dm6]	C	G	2.262e^-5	0.885	INTRON Pkc53E
3L	15726675	3L_15726675_SNP [dm3] 3L_15733575_SNP [dm6]	G	T	2.264e^-5	0.885	INTERGENIC
X	18487281	X_18487281_SNP [dm3] X_18593248_SNP [dm6]	A	T	2.280e^-5	0.885	INTERGENIC
2L	8010924	2L_8010924_SNP [dm3] 2L_8010924_SNP [dm6]	A	T	2.364e^-5	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	3929482	2L_3929482_SNP [dm3] 2L_3929482_SNP [dm6]	T	G	2.390e^-5	0.885	SYNONYMOUS_CODING fred
2R	18335984	2R_18335984_SNP [dm3] 2R_22448479_SNP [dm6]	T	C	2.475e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17168812	3R_17168812_SNP [dm3] 3R_21343090_SNP [dm6]	A	C	2.489e^-5	0.885	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24342899	3R_24342899_SNP [dm3] 3R_28517177_SNP [dm6]	A	G	2.529e^-5	0.885	INTRON Dhc98D	TF binding site BDTNP1_TFBS_da
X	16287121	X_16287121_SNP [dm3] X_16393088_SNP [dm6]	C	T	2.558e^-5	0.885	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1070603	2L_1070603_SNP [dm3] 2L_1070603_SNP [dm6]	T	G	2.620e^-5	0.885	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7181632	2R_7181632_SNP [dm3] 2R_11294127_SNP [dm6]	A	G	2.662e^-5	0.885	SYNONYMOUS_CODING CG18336 UPSTREAM dare DOWNSTREAM CG30033 & 1 other	TF binding site mE1_TFBS_cad
2L	5249052	2L_5249052_SNP [dm3] 2L_5249052_SNP [dm6]	C	G	2.673e^-5	0.885	INTRON tkv	TF binding site mE1_TFBS_cnc
2R	7217716	2R_7217716_DEL [dm3] 2R_11330211_DEL [dm6]	GTG	G	2.714e^-5	0.885	INTRON sha	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12855302	2R_12855302_SNP [dm3] 2R_16967797_SNP [dm6]	A	T	2.774e^-5	0.885	UPSTREAM tRNA:G3:53E INTERGENIC
2L	547947	2L_547947_SNP [dm3] 2L_547947_SNP [dm6]	A	T	2.814e^-5	0.885	DOWNSTREAM nAChRbeta3 INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8282064	2L_8282064_SNP [dm3] 2L_8282064_SNP [dm6]	T	A	2.855e^-5	0.885	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18067506	2R_18067506_SNP [dm3] 2R_22180001_SNP [dm6]	T	C	2.859e^-5	0.885	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19920038	2L_19920038_SNP [dm3] 2L_19920038_SNP [dm6]	T	C	2.870e^-5	0.885	INTRON sick EXON CR43828
2L	5249137	2L_5249137_SNP [dm3] 2L_5249137_SNP [dm6]	T	C	2.881e^-5	0.885	INTRON tkv	TF binding site mE1_TFBS_cnc
3L	8725557	3L_8725557_SNP [dm3] 3L_8732457_SNP [dm6]	C	A	2.918e^-5	0.885	SPLICE_SITE_REGION Cp16 SYNONYMOUS_CODING Cp16 DOWNSTREAM Prm
3L	22921342	3L_22921342_SNP [dm3] 3L_22928242_SNP [dm6]	C	T	2.942e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10923615	3L_10923615_SNP [dm3] 3L_10930515_SNP [dm6]	T	A	2.995e^-5	0.885	INTERGENIC
2L	8984435	2L_8984435_SNP [dm3] 2L_8984435_SNP [dm6]	T	A	3.002e^-5	0.885	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8010947	2L_8010947_SNP [dm3] 2L_8010947_SNP [dm6]	A	G	3.040e^-5	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	22292576	3R_22292576_SNP [dm3] 3R_26466854_SNP [dm6]	A	G	3.070e^-5	0.885	NON_SYNONYMOUS_CODING CG5455
2L	14827403	2L_14827403_SNP [dm3] 2L_14827403_SNP [dm6]	C	G	3.152e^-5	0.885	INTERGENIC
3L	15726664	3L_15726664_SNP [dm3] 3L_15733564_SNP [dm6]	T	C	3.168e^-5	0.885	INTERGENIC
3L	15731024	3L_15731024_SNP [dm3] 3L_15737924_SNP [dm6]	T	A	3.168e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11446111	2R_11446111_SNP [dm3] 2R_15558606_SNP [dm6]	C	T	3.466e^-5	0.885	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da
2L	19920106	2L_19920106_SNP [dm3] 2L_19920106_SNP [dm6]	C	T	3.582e^-5	0.885	INTRON sick EXON CR43828
3L	3075393	3L_3075393_SNP [dm3] 3L_3075393_SNP [dm6]	G	A	3.583e^-5	0.885	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2009329	3L_2009329_SNP [dm3] 3L_2009329_SNP [dm6]	A	C	3.790e^-5	0.885	DOWNSTREAM CR44535 EXON CR44535
X	16176577	X_16176577_SNP [dm3] X_16282544_SNP [dm6]	G	C	3.791e^-5	0.885	INTRON eas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11551456	X_11551456_SNP [dm3] X_11657423_SNP [dm6]	T	C	3.807e^-5	0.885	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	601746	3L_601746_SNP [dm3] 3L_601746_SNP [dm6]	G	A	3.814e^-5	0.885	INTRON CG13893	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11617604	3L_11617604_SNP [dm3] 3L_11624504_SNP [dm6]	C	A	3.842e^-5	0.885	UPSTREAM CG6084 DOWNSTREAM CG6083 INTERGENIC
2R	9723313	2R_9723313_SNP [dm3] 2R_13835808_SNP [dm6]	G	A	3.904e^-5	0.885	UPSTREAM CG6337 & 1 other INTERGENIC
3R	16105424	3R_16105424_SNP [dm3] 3R_20279702_SNP [dm6]	G	A	3.920e^-5	0.885	INTRON cic
3R	24271115	3R_24271115_SNP [dm3] 3R_28445393_SNP [dm6]	T	G	3.970e^-5	0.885	INTRON beat-VI
2L	19674980	2L_19674980_SNP [dm3] 2L_19674980_SNP [dm6]	A	T	4.078e^-5	0.885	INTRON Lar
2R	18985974	2R_18985974_SNP [dm3] 2R_23098451_SNP [dm6]	C	T	4.098e^-5	0.885	INTERGENIC
2L	5638196	2L_5638196_SNP [dm3] 2L_5638196_SNP [dm6]	G	A	4.106e^-5	0.885	INTRON CG31646
2L	8010927	2L_8010927_DEL [dm3] 2L_8010927_DEL [dm6]	AA	A	4.108e^-5	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	21807026	3R_21807026_SNP [dm3] 3R_25981304_SNP [dm6]	A	C	4.117e^-5	0.885	UTR_3_PRIME CG42261	TF binding site mE1_TFBS_cad
3R	10298156	3R_10298156_SNP [dm3] 3R_14472434_SNP [dm6]	C	A	4.159e^-5	0.885	INTRON cv-c
2L	18589334	2L_18589334_DEL [dm3] 2L_18589334_DEL [dm6]	GGGGAGAGGGACTGG...	G	4.176e^-5	0.885	INTRON Pde11
2L	2659708	2L_2659708_SNP [dm3] 2L_2659708_SNP [dm6]	A	C	4.268e^-5	0.885	INTERGENIC
3R	22019255	3R_22019255_SNP [dm3] 3R_26193533_SNP [dm6]	A	T	4.334e^-5	0.885	INTERGENIC
2L	6789801	2L_6789801_SNP [dm3] 2L_6789801_SNP [dm6]	G	A	4.566e^-5	0.885	UTR_3_PRIME nrv2	regulatory region REDfly_CRMs
2R	12855284	2R_12855284_SNP [dm3] 2R_16967779_SNP [dm6]	A	G	4.609e^-5	0.885	UPSTREAM tRNA:G3:53E INTERGENIC
2R	18243576	2R_18243576_SNP [dm3] 2R_22356071_SNP [dm6]	C	A	4.634e^-5	0.885	INTRON Liprin-gamma
2R	13563320	2R_13563320_SNP [dm3] 2R_17675815_SNP [dm6]	C	T	4.684e^-5	0.885	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1130106	3L_1130106_INS [dm3] 3L_1130106_INS [dm6]	G	GGCTCCTCGATCTCCTCGCT...	4.695e^-5	0.885	INTERGENIC	regulatory region REDfly_CRMs
3R	26633747	3R_26633747_SNP [dm3] 3R_30808025_SNP [dm6]	G	T	4.705e^-5	0.885	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13447730	2R_13447730_SNP [dm3] 2R_17560225_SNP [dm6]	T	A	4.725e^-5	0.885	INTRON Klp54D
3R	16105535	3R_16105535_SNP [dm3] 3R_20279813_SNP [dm6]	G	A	4.775e^-5	0.885	INTRON cic
2R	9050261	2R_9050261_SNP [dm3] 2R_13162756_SNP [dm6]	A	G	4.852e^-5	0.885	UTR_3_PRIME Nrk DOWNSTREAM CG15870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16121444	3R_16121444_SNP [dm3] 3R_20295722_SNP [dm6]	A	G	4.852e^-5	0.885	SYNONYMOUS_CODING cic	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23921956	3R_23921956_SNP [dm3] 3R_28096234_SNP [dm6]	G	A	4.898e^-5	0.885	INTERGENIC
2L	19724788	2L_19724788_SNP [dm3] 2L_19724788_SNP [dm6]	A	C	4.979e^-5	0.885	INTRON Lar
2R	11988553	2R_11988553_SNP [dm3] 2R_16101048_SNP [dm6]	C	T	5.048e^-5	0.885	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	562738	2L_562738_SNP [dm3] 2L_562738_SNP [dm6]	A	G	5.057e^-5	0.885	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	11988578	2R_11988578_SNP [dm3] 2R_16101073_SNP [dm6]	A	G	5.110e^-5	0.885	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	5248274	2L_5248274_SNP [dm3] 2L_5248274_SNP [dm6]	T	C	5.195e^-5	0.885	INTRON tkv
3R	22018306	3R_22018306_SNP [dm3] 3R_26192584_SNP [dm6]	G	T	5.232e^-5	0.885	INTERGENIC
X	20260851	X_20260851_SNP [dm3] X_20389824_SNP [dm6]	T	A	5.304e^-5	0.885	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9410852	2R_9410852_SNP [dm3] 2R_13523347_SNP [dm6]	A	C	5.322e^-5	0.885	UTR_3_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	14116567	2R_14116567_SNP [dm3] 2R_18229062_SNP [dm6]	A	G	5.334e^-5	0.885	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21926821	3R_21926821_SNP [dm3] 3R_26101099_SNP [dm6]	T	C	5.359e^-5	0.885	INTERGENIC
2R	12845510	2R_12845510_SNP [dm3] 2R_16958005_SNP [dm6]	T	A	5.398e^-5	0.885	NON_SYNONYMOUS_CODING CG6665 DOWNSTREAM PIG-V & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4040548	2L_4040548_SNP [dm3] 2L_4040548_SNP [dm6]	A	T	5.439e^-5	0.885	INTRON ed
3R	6510146	3R_6510146_SNP [dm3] 3R_10684424_SNP [dm6]	G	C	5.448e^-5	0.885	EXON CR44230
2R	18069257	2R_18069257_SNP [dm3] 2R_22181752_SNP [dm6]	C	A	5.462e^-5	0.885	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7389296	2R_7389296_SNP [dm3] 2R_11501791_SNP [dm6]	C	T	5.475e^-5	0.885	INTRON inv
2L	8900093	2L_8900093_SNP [dm3] 2L_8900093_SNP [dm6]	G	T	5.567e^-5	0.885	INTRON CG34398
3R	22031960	3R_22031960_SNP [dm3] 3R_26206238_SNP [dm6]	A	G	5.634e^-5	0.885	INTRON CR44320
X	16161903	X_16161903_SNP [dm3] X_16267870_SNP [dm6]	T	A	5.669e^-5	0.885	INTRON kat80
X	16182068	X_16182068_SNP [dm3] X_16288035_SNP [dm6]	C	T	5.678e^-5	0.885	SYNONYMOUS_CODING CG32576 UPSTREAM caz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13880210	2L_13880210_SNP [dm3] 2L_13880210_SNP [dm6]	A	G	5.688e^-5	0.885	INTRON CenG1A
2R	11080349	2R_11080349_SNP [dm3] 2R_15192844_SNP [dm6]	T	C	5.699e^-5	0.885	SYNONYMOUS_CODING Sfp51E
2R	18321251	2R_18321251_SNP [dm3] 2R_22433746_SNP [dm6]	T	G	5.717e^-5	0.885	INTERGENIC
2R	18321253	2R_18321253_INS [dm3] 2R_22433748_INS [dm6]	A	AACA	5.717e^-5	0.885	INTERGENIC
2L	547657	2L_547657_SNP [dm3] 2L_547657_SNP [dm6]	A	G	5.720e^-5	0.885	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19925279	2L_19925279_INS [dm3] 2L_19925279_INS [dm6]	A	ACTTTCA	5.751e^-5	0.885	INTRON sick	TF binding site mE1_TFBS_chinmo
3L	10996219	3L_10996219_SNP [dm3] 3L_11003119_SNP [dm6]	C	A	5.820e^-5	0.885	INTRON klu
3R	16121324	3R_16121324_SNP [dm3] 3R_20295602_SNP [dm6]	A	G	5.857e^-5	0.885	SYNONYMOUS_CODING cic	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9950666	3L_9950666_SNP [dm3] 3L_9957566_SNP [dm6]	A	T	5.909e^-5	0.885	INTRON CG34356
2L	4360054	2L_4360054_SNP [dm3] 2L_4360054_SNP [dm6]	C	G	5.945e^-5	0.885	INTERGENIC	regulatory region REDfly_CRMs
2R	5980141	2R_5980141_SNP [dm3] 2R_10092636_SNP [dm6]	G	T	5.968e^-5	0.885	INTRON CG2269
2R	18467884	2R_18467884_SNP [dm3] 2R_22580379_SNP [dm6]	G	T	6.034e^-5	0.885	INTRON dnr1
3L	15724330	3L_15724330_SNP [dm3] 3L_15731230_SNP [dm6]	A	T	6.094e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18600349	2L_18600349_SNP [dm3] 2L_18600349_SNP [dm6]	T	A	6.097e^-5	0.885	UTR_3_PRIME CG10413	regulatory region REDfly_CRMs
2L	3341762	2L_3341762_DEL [dm3] 2L_3341762_DEL [dm6]	GT	G	6.188e^-5	0.885	INTRON E23
3R	17040663	3R_17040663_SNP [dm3] 3R_21214941_SNP [dm6]	C	T	6.201e^-5	0.885	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	10717022	X_10717022_INS [dm3] X_10822989_INS [dm6]	T	TGTA	6.235e^-5	0.885	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22970380	3L_22970380_SNP [dm3] 3L_22977280_SNP [dm6]	C	T	6.279e^-5	0.885	INTERGENIC	transposable element FlyBase
2L	550739	2L_550739_SNP [dm3] 2L_550739_SNP [dm6]	C	T	6.359e^-5	0.885	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11280661	2R_11280661_SNP [dm3] 2R_15393156_SNP [dm6]	A	G	6.449e^-5	0.885	INTERGENIC
2R	2079049	2R_2079049_SNP [dm3] 2R_6191544_SNP [dm6]	T	A	6.464e^-5	0.885	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2R	18467883	2R_18467883_SNP [dm3] 2R_22580378_SNP [dm6]	C	T	6.480e^-5	0.885	INTRON dnr1
X	5455566	X_5455566_SNP [dm3] X_5561533_SNP [dm6]	A	T	6.550e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18321250	2R_18321250_SNP [dm3] 2R_22433745_SNP [dm6]	G	T	6.552e^-5	0.885	INTERGENIC
3L	4072995	3L_4072995_SNP [dm3] 3L_4072995_SNP [dm6]	G	C	6.566e^-5	0.885	SYNONYMOUS_CODING Faa
2L	17506812	2L_17506812_SNP [dm3] 2L_17506812_SNP [dm6]	C	A	6.749e^-5	0.885	INTRON Dhc36C	TF binding site mE1_TFBS_cad
3L	10668979	3L_10668979_SNP [dm3] 3L_10675879_SNP [dm6]	T	A	6.787e^-5	0.885	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16703445	2R_16703445_DEL [dm3] 2R_20815940_DEL [dm6]	CC	C	6.836e^-5	0.885	INTERGENIC
2R	20696615	2R_20696615_DEL [dm3] 2R_24809092_DEL [dm6]	GGTTCCAGTTCTGAGCTCTA...	G	6.920e^-5	0.885	UPSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9696644	2R_9696644_SNP [dm3] 2R_13809139_SNP [dm6]	C	A	6.934e^-5	0.885	INTRON stj
2L	13573758	2L_13573758_SNP [dm3] 2L_13573758_SNP [dm6]	G	A	6.943e^-5	0.885	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24344889	3R_24344889_SNP [dm3] 3R_28519167_SNP [dm6]	T	C	6.961e^-5	0.885	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	17506801	2L_17506801_SNP [dm3] 2L_17506801_SNP [dm6]	T	A	6.988e^-5	0.885	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2L	7718536	2L_7718536_SNP [dm3] 2L_7718536_SNP [dm6]	C	T	6.989e^-5	0.885	INTRON CG13793
2L	17567255	2L_17567255_SNP [dm3] 2L_17567255_SNP [dm6]	C	T	7.034e^-5	0.885	DOWNSTREAM mir-124 INTERGENIC
X	19643827	X_19643827_SNP [dm3] X_19749794_SNP [dm6]	T	C	7.042e^-5	0.885	SYNONYMOUS_CODING Alr UPSTREAM Pmp70	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	20052841	3R_20052841_SNP [dm3] 3R_24227119_SNP [dm6]	G	A	7.144e^-5	0.885	UTR_5_PRIME CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11988594	2R_11988594_SNP [dm3] 2R_16101089_SNP [dm6]	G	C	7.145e^-5	0.885	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	547678	2L_547678_SNP [dm3] 2L_547678_SNP [dm6]	G	A	7.290e^-5	0.885	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17506428	2L_17506428_SNP [dm3] 2L_17506428_SNP [dm6]	A	G	7.365e^-5	0.885	INTRON Dhc36C
2R	9637001	2R_9637001_SNP [dm3] 2R_13749496_SNP [dm6]	T	C	7.425e^-5	0.885	DOWNSTREAM fas INTERGENIC
2L	11904371	2L_11904371_SNP [dm3] 2L_11904371_SNP [dm6]	C	T	7.484e^-5	0.885	INTRON Pde1c
2L	17506425	2L_17506425_SNP [dm3] 2L_17506425_SNP [dm6]	G	T	7.563e^-5	0.885	INTRON Dhc36C
2L	562444	2L_562444_SNP [dm3] 2L_562444_SNP [dm6]	C	A	7.756e^-5	0.885	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	24344820	3R_24344820_SNP [dm3] 3R_28519098_SNP [dm6]	A	T	7.790e^-5	0.885	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2R	12834480	2R_12834480_SNP [dm3] 2R_16946975_SNP [dm6]	A	G	7.844e^-5	0.885	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
X	4621904	X_4621904_SNP [dm3] X_4727871_SNP [dm6]	G	A	7.950e^-5	0.885	SYNONYMOUS_CODING Proc-R
2R	15762942	2R_15762942_SNP [dm3] 2R_19875437_SNP [dm6]	T	G	7.975e^-5	0.885	INTERGENIC
X	1625672	X_1625672_SNP [dm3] X_1731639_SNP [dm6]	C	A	7.999e^-5	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26682876	3R_26682876_SNP [dm3] 3R_30857154_SNP [dm6]	G	T	8.042e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21921906	3R_21921906_SNP [dm3] 3R_26096184_SNP [dm6]	C	T	8.048e^-5	0.885	SPLICE_SITE_REGION dys INTRON dys
2R	16982390	2R_16982390_DEL [dm3] 2R_21094885_DEL [dm6]	CGC	C	8.059e^-5	0.885	INTRON CG34396
2R	19915865	2R_19915865_SNP [dm3] 2R_24028342_SNP [dm6]	A	C	8.182e^-5	0.885	UPSTREAM CG3163 DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2816136	X_2816136_SNP [dm3] X_2922103_SNP [dm6]	C	T	8.209e^-5	0.885	NON_SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
3R	22298935	3R_22298935_SNP [dm3] 3R_26473213_SNP [dm6]	C	T	8.223e^-5	0.885	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo
2L	19968158	2L_19968158_INS [dm3] 2L_19968158_INS [dm6]	T	TT	8.243e^-5	0.885	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
2R	18467885	2R_18467885_DEL [dm3] 2R_22580380_DEL [dm6]	AAAC	A	8.348e^-5	0.885	INTRON dnr1
3L	15878704	3L_15878704_SNP [dm3] 3L_15885604_SNP [dm6]	G	A	8.396e^-5	0.885	INTRON pHCl EXON CR44050
X	10648829	X_10648829_SNP [dm3] X_10754796_SNP [dm6]	C	A	8.444e^-5	0.885	UTR_5_PRIME Rph INTRON Rph
X	16181757	X_16181757_SNP [dm3] X_16287724_SNP [dm6]	G	A	8.458e^-5	0.885	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
3L	22922466	3L_22922466_SNP [dm3] 3L_22929366_SNP [dm6]	G	T	8.553e^-5	0.885	INTERGENIC
3R	15850291	3R_15850291_SNP [dm3] 3R_20024569_SNP [dm6]	C	T	8.557e^-5	0.885	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	8231279	2L_8231279_SNP [dm3] 2L_8231279_SNP [dm6]	G	T	8.559e^-5	0.885	UPSTREAM Pvr INTRON Pvr
X	20241013	X_20241013_SNP [dm3] X_20369986_SNP [dm6]	G	C	8.575e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3431456	3L_3431456_SNP [dm3] 3L_3431456_SNP [dm6]	T	C	8.654e^-5	0.885	INTRON eIF5B
2L	8010963	2L_8010963_SNP [dm3] 2L_8010963_SNP [dm6]	A	T	8.719e^-5	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	3075446	3L_3075446_SNP [dm3] 3L_3075446_SNP [dm6]	A	G	8.740e^-5	0.885	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3243095	2L_3243095_SNP [dm3] 2L_3243095_SNP [dm6]	C	G	8.802e^-5	0.885	INTERGENIC
2R	18465984	2R_18465984_SNP [dm3] 2R_22578479_SNP [dm6]	G	T	8.967e^-5	0.885	INTRON dnr1
2L	6111506	2L_6111506_INS [dm3] 2L_6111506_INS [dm6]	T	TAAAC	9.028e^-5	0.885	INTRON stai
2R	19227052	2R_19227052_SNP [dm3] 2R_23339529_SNP [dm6]	T	G	9.039e^-5	0.885	INTERGENIC
3R	20928401	3R_20928401_SNP [dm3] 3R_25102679_SNP [dm6]	C	A	9.110e^-5	0.885	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
2R	16603668	2R_16603668_SNP [dm3] 2R_20716163_SNP [dm6]	C	G	9.184e^-5	0.885	INTRON dpr
2R	11988610	2R_11988610_SNP [dm3] 2R_16101105_SNP [dm6]	T	A	9.259e^-5	0.885	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3R	21932824	3R_21932824_SNP [dm3] 3R_26107102_SNP [dm6]	G	A	9.301e^-5	0.885	UTR_5_PRIME CG31324
X	10228201	X_10228201_SNP [dm3] X_10334168_SNP [dm6]	A	G	9.363e^-5	0.885	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
3R	26633750	3R_26633750_SNP [dm3] 3R_30808028_SNP [dm6]	G	T	9.426e^-5	0.885	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20874944	2R_20874944_SNP [dm3] 2R_24987421_SNP [dm6]	C	T	9.493e^-5	0.885	UPSTREAM CG3829 INTRON CG3829	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	8903160	2L_8903160_SNP [dm3] 2L_8903160_SNP [dm6]	G	A	9.500e^-5	0.885	INTRON CG34398
2L	18600313	2L_18600313_SNP [dm3] 2L_18600313_SNP [dm6]	G	A	9.537e^-5	0.885	UTR_3_PRIME CG10413	regulatory region REDfly_CRMs
X	16161908	X_16161908_SNP [dm3] X_16267875_SNP [dm6]	T	C	9.556e^-5	0.885	INTRON kat80
3R	24279547	3R_24279547_SNP [dm3] 3R_28453825_SNP [dm6]	A	G	9.686e^-5	0.885	INTRON beat-VI
2R	7181532	2R_7181532_SNP [dm3] 2R_11294027_SNP [dm6]	T	G	9.697e^-5	0.885	NON_SYNONYMOUS_CODING CG18336 UPSTREAM dare DOWNSTREAM CG30033 & 1 other	TF binding site mE1_TFBS_cad
3R	16117444	3R_16117444_SNP [dm3] 3R_20291722_SNP [dm6]	T	C	9.704e^-5	0.885	INTRON cic	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10586327	2R_10586327_SNP [dm3] 2R_14698822_SNP [dm6]	C	T	9.789e^-5	0.885	INTRON mspo
2R	18467879	2R_18467879_DEL [dm3] 2R_22580374_DEL [dm6]	TG	T	9.820e^-5	0.885	INTRON dnr1
3R	13945432	3R_13945432_SNP [dm3] 3R_18119710_SNP [dm6]	T	G	9.941e^-5	0.885	INTRON sr
3R	21576907	3R_21576907_SNP [dm3] 3R_25751185_SNP [dm6]	A	G	9.972e^-5	0.885	INTRON LpR1
3R	20052804	3R_20052804_SNP [dm3] 3R_24227082_SNP [dm6]	C	T	9.995e^-5	0.885	START_GAINED CG13609 UTR_5_PRIME CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	6201208	X_6201208_SNP [dm3] X_6307175_SNP [dm6]	T	A	1.002e^-4	0.885	DOWNSTREAM CG3823 INTERGENIC
X	10111915	X_10111915_SNP [dm3] X_10217882_SNP [dm6]	C	T	1.015e^-4	0.885	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	19864338	3R_19864338_SNP [dm3] 3R_24038616_SNP [dm6]	T	C	1.019e^-4	0.885	SYNONYMOUS_CODING spas UTR_5_PRIME Miro UPSTREAM Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4072824	3L_4072824_SNP [dm3] 3L_4072824_SNP [dm6]	C	T	1.022e^-4	0.885	SYNONYMOUS_CODING Faa
3L	5488745	3L_5488745_SNP [dm3] 3L_5495645_SNP [dm6]	A	T	1.042e^-4	0.885	UPSTREAM CR44520 INTERGENIC
2L	2659687	2L_2659687_SNP [dm3] 2L_2659687_SNP [dm6]	G	A	1.042e^-4	0.885	INTERGENIC
2R	7389271	2R_7389271_DEL [dm3] 2R_11501766_DEL [dm6]	GTGGCAG	G	1.043e^-4	0.885	INTRON inv
3L	12499212	3L_12499212_SNP [dm3] 3L_12506112_SNP [dm6]	A	T	1.044e^-4	0.885	NON_SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5244895	2L_5244895_SNP [dm3] 2L_5244895_SNP [dm6]	C	G	1.048e^-4	0.885	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
2L	3341748	2L_3341748_SNP [dm3] 2L_3341748_SNP [dm6]	C	A	1.053e^-4	0.885	INTRON E23
3R	20053152	3R_20053152_SNP [dm3] 3R_24227430_SNP [dm6]	G	T	1.054e^-4	0.885	NON_SYNONYMOUS_CODING CG13609 UPSTREAM Spps DOWNSTREAM Spase22-23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	17718565	2R_17718565_SNP [dm3] 2R_21831060_SNP [dm6]	G	T	1.057e^-4	0.885	INTRON CG13492
3L	22850208	3L_22850208_SNP [dm3] 3L_22857108_SNP [dm6]	T	C	1.061e^-4	0.885	INTERGENIC
3R	20053601	3R_20053601_SNP [dm3] 3R_24227879_SNP [dm6]	C	G	1.065e^-4	0.885	SYNONYMOUS_CODING CG13609 UPSTREAM Spps DOWNSTREAM Spase22-23	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	2078924	2R_2078924_SNP [dm3] 2R_6191419_SNP [dm6]	G	A	1.068e^-4	0.885	DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl
X	12857317	X_12857317_SNP [dm3] X_12963284_SNP [dm6]	C	G	1.074e^-4	0.885	INTERGENIC
2L	9843549	2L_9843549_SNP [dm3] 2L_9843549_SNP [dm6]	C	A	1.075e^-4	0.885	INTRON nAChRalpha6
2L	536564	2L_536564_SNP [dm3] 2L_536564_SNP [dm6]	A	G	1.075e^-4	0.885	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15783006	2R_15783006_SNP [dm3] 2R_19895501_SNP [dm6]	C	T	1.082e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15783007	2R_15783007_SNP [dm3] 2R_19895502_SNP [dm6]	A	T	1.082e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3075378	3L_3075378_DEL [dm3] 3L_3075378_DEL [dm6]	AAATTAAAGCAAAG...	TC	1.084e^-4	0.885	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20882603	2R_20882603_SNP [dm3] 2R_24995080_SNP [dm6]	G	A	1.085e^-4	0.885	SYNONYMOUS_CODING zip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7221780	3R_7221780_SNP [dm3] 3R_11396058_SNP [dm6]	C	G	1.091e^-4	0.885	UTR_3_PRIME pros DOWNSTREAM pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12704316	3L_12704316_SNP [dm3] 3L_12711216_SNP [dm6]	C	T	1.094e^-4	0.885	DOWNSTREAM mirr INTERGENIC
2L	19851478	2L_19851478_SNP [dm3] 2L_19851478_SNP [dm6]	T	A	1.098e^-4	0.885	INTRON sick
3L	16797700	3L_16797700_DEL [dm3] 3L_16804600_DEL [dm6]	TACTACGTACCAAGCACTT...	T	1.100e^-4	0.885	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
2L	551066	2L_551066_SNP [dm3] 2L_551066_SNP [dm6]	T	A	1.102e^-4	0.885	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18487354	X_18487354_SNP [dm3] X_18593321_SNP [dm6]	C	T	1.103e^-4	0.885	INTERGENIC
3L	15878946	3L_15878946_SNP [dm3] 3L_15885846_SNP [dm6]	A	T	1.111e^-4	0.885	UPSTREAM CR44050 INTRON pHCl
2L	1138979	2L_1138979_SNP [dm3] 2L_1138979_SNP [dm6]	T	C	1.113e^-4	0.885	SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24343216	3R_24343216_SNP [dm3] 3R_28517494_SNP [dm6]	T	A	1.114e^-4	0.885	INTRON Dhc98D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	24279726	3R_24279726_SNP [dm3] 3R_28454004_SNP [dm6]	T	C	1.115e^-4	0.885	INTRON beat-VI
X	18487618	X_18487618_SNP [dm3] X_18593585_SNP [dm6]	T	C	1.115e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15330952	3R_15330952_SNP [dm3] 3R_19505230_SNP [dm6]	A	G	1.128e^-4	0.885	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18321330	2R_18321330_SNP [dm3] 2R_22433825_SNP [dm6]	G	A	1.141e^-4	0.885	INTERGENIC
3R	19482966	3R_19482966_SNP [dm3] 3R_23657244_SNP [dm6]	C	T	1.143e^-4	0.885	INTRON CG31145
2L	17834087	2L_17834087_SNP [dm3] 2L_17834087_SNP [dm6]	C	T	1.164e^-4	0.885	INTRON CadN2	TF binding site mE1_TFBS_HSA
2L	4040539	2L_4040539_SNP [dm3] 2L_4040539_SNP [dm6]	A	T	1.165e^-4	0.885	INTRON ed
3L	3958698	3L_3958698_SNP [dm3] 3L_3958698_SNP [dm6]	G	C	1.172e^-4	0.885	SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	12777423	X_12777423_SNP [dm3] X_12883390_SNP [dm6]	T	G	1.176e^-4	0.885	INTRON Pde9
3L	12035557	3L_12035557_SNP [dm3] 3L_12042457_SNP [dm6]	T	G	1.178e^-4	0.885	SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2L	17834077	2L_17834077_SNP [dm3] 2L_17834077_SNP [dm6]	T	C	1.184e^-4	0.885	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	18981933	2R_18981933_SNP [dm3] 2R_23094410_SNP [dm6]	C	G	1.185e^-4	0.885	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14118828	2R_14118828_SNP [dm3] 2R_18231323_SNP [dm6]	G	A	1.188e^-4	0.885	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12510928	3L_12510928_SNP [dm3] 3L_12517828_SNP [dm6]	C	T	1.188e^-4	0.885	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11988641	2R_11988641_SNP [dm3] 2R_16101136_SNP [dm6]	T	G	1.188e^-4	0.885	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	5790115	3L_5790115_SNP [dm3] 3L_5797015_SNP [dm6]	C	A	1.195e^-4	0.885	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18329138	2R_18329138_SNP [dm3] 2R_22441633_SNP [dm6]	A	C	1.197e^-4	0.885	INTERGENIC
3L	3431904	3L_3431904_SNP [dm3] 3L_3431904_SNP [dm6]	A	G	1.200e^-4	0.885	INTRON eIF5B
3R	22020750	3R_22020750_SNP [dm3] 3R_26195028_SNP [dm6]	A	C	1.210e^-4	0.885	UPSTREAM CR44320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5599284	3L_5599284_SNP [dm3] 3L_5606184_SNP [dm6]	G	T	1.217e^-4	0.885	DOWNSTREAM Eaf6 INTRON mthl2
X	14712196	X_14712196_DEL [dm3] X_14818163_DEL [dm6]	TAGACGAATATT...	T	1.228e^-4	0.885	INTRON rut	TF binding site BDTNP1_TFBS_twi
2R	17718752	2R_17718752_SNP [dm3] 2R_21831247_SNP [dm6]	T	C	1.231e^-4	0.885	INTRON CG13492
2R	17011469	2R_17011469_SNP [dm3] 2R_21123964_SNP [dm6]	A	G	1.235e^-4	0.885	UTR_3_PRIME CG4050 DOWNSTREAM ktub	TF binding site mE1_TFBS_cad
3R	22294564	3R_22294564_SNP [dm3] 3R_26468842_SNP [dm6]	T	A	1.239e^-4	0.885	INTRON CG5455
3R	22294573	3R_22294573_SNP [dm3] 3R_26468851_SNP [dm6]	C	T	1.239e^-4	0.885	SPLICE_SITE_REGION CG5455 INTRON CG5455
2L	4360200	2L_4360200_SNP [dm3] 2L_4360200_SNP [dm6]	G	A	1.239e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
2R	11988646	2R_11988646_SNP [dm3] 2R_16101141_SNP [dm6]	C	A	1.241e^-4	0.885	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	17506431	2L_17506431_SNP [dm3] 2L_17506431_SNP [dm6]	T	C	1.253e^-4	0.885	INTRON Dhc36C
2R	9928202	2R_9928202_INS [dm3] 2R_14040697_INS [dm6]	A	AGCA	1.254e^-4	0.885	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	9875541	2L_9875541_SNP [dm3] 2L_9875541_SNP [dm6]	T	C	1.254e^-4	0.885	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	3485797	2L_3485797_SNP [dm3] 2L_3485797_SNP [dm6]	T	A	1.267e^-4	0.885	INTRON CG15414
3R	24348142	3R_24348142_SNP [dm3] 3R_28522420_SNP [dm6]	C	T	1.270e^-4	0.885	INTRON Ppn
3L	2091232	3L_2091232_SNP [dm3] 3L_2091232_SNP [dm6]	G	A	1.272e^-4	0.885	INTRON sls	TF binding site mE1_TFBS_HSA
2L	3800115	2L_3800115_SNP [dm3] 2L_3800115_SNP [dm6]	T	A	1.276e^-4	0.885	INTRON CG3921
2R	11988640	2R_11988640_SNP [dm3] 2R_16101135_SNP [dm6]	A	G	1.286e^-4	0.885	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	2024652	2R_2024652_SNP [dm3] 2R_6137147_SNP [dm6]	T	G	1.289e^-4	0.885	UPSTREAM CG14589 INTRON EcR
3L	4072820	3L_4072820_SNP [dm3] 3L_4072820_SNP [dm6]	G	A	1.292e^-4	0.885	SYNONYMOUS_CODING Faa
2L	659670	2L_659670_SNP [dm3] 2L_659670_SNP [dm6]	A	G	1.301e^-4	0.885	INTRON ds
2L	3952232	2L_3952232_SNP [dm3] 2L_3952232_SNP [dm6]	T	C	1.303e^-4	0.885	INTRON fred
2R	2785610	2R_2785610_SNP [dm3] 2R_6898105_SNP [dm6]	T	C	1.303e^-4	0.885	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3L	9143584	3L_9143584_SNP [dm3] 3L_9150484_SNP [dm6]	T	C	1.304e^-4	0.885	UTR_3_PRIME Rdl DOWNSTREAM Rdl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8010955	2L_8010955_SNP [dm3] 2L_8010955_SNP [dm6]	G	C	1.309e^-4	0.885	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	20874972	2R_20874972_SNP [dm3] 2R_24987449_SNP [dm6]	T	C	1.312e^-4	0.885	UPSTREAM CG3829 INTRON CG3829	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	20875003	2R_20875003_SNP [dm3] 2R_24987480_SNP [dm6]	C	A	1.312e^-4	0.885	UPSTREAM CG3829 INTRON CG3829	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	9697894	3R_9697894_SNP [dm3] 3R_13872172_SNP [dm6]	G	A	1.319e^-4	0.885	INTRON E5
2R	2787151	2R_2787151_SNP [dm3] 2R_6899646_SNP [dm6]	A	T	1.320e^-4	0.885	INTRON CG30158
2L	17506826	2L_17506826_SNP [dm3] 2L_17506826_SNP [dm6]	A	T	1.329e^-4	0.885	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2L	13171517	2L_13171517_SNP [dm3] 2L_13171517_SNP [dm6]	A	G	1.333e^-4	0.885	SYNONYMOUS_CODING Sfmbt
2R	2024692	2R_2024692_SNP [dm3] 2R_6137187_SNP [dm6]	T	A	1.333e^-4	0.885	UPSTREAM CG14589 INTRON EcR
2R	5680770	2R_5680770_SNP [dm3] 2R_9793265_SNP [dm6]	T	A	1.335e^-4	0.885	UTR_5_PRIME CG1688 UPSTREAM CG1698
2R	19559679	2R_19559679_SNP [dm3] 2R_23672156_SNP [dm6]	G	A	1.344e^-4	0.885	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11535851	2L_11535851_SNP [dm3] 2L_11535851_SNP [dm6]	T	G	1.344e^-4	0.885	UPSTREAM CG43438 INTERGENIC
X	8956675	X_8956675_SNP [dm3] X_9062642_SNP [dm6]	G	T	1.358e^-4	0.888	INTRON CG15365
3L	12060640	3L_12060640_SNP [dm3] 3L_12067540_SNP [dm6]	G	T	1.358e^-4	0.888	UTR_3_PRIME Sema-5c DOWNSTREAM Sema-5c	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1666883	3L_1666883_SNP [dm3] 3L_1666883_SNP [dm6]	G	T	1.365e^-4	0.888	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
2R	11448928	2R_11448928_SNP [dm3] 2R_15561423_SNP [dm6]	G	A	1.368e^-4	0.888	SPLICE_SITE_REGION CG12963 INTRON CG12963
3L	4072992	3L_4072992_SNP [dm3] 3L_4072992_SNP [dm6]	G	C	1.385e^-4	0.888	SYNONYMOUS_CODING Faa
2R	20876795	2R_20876795_SNP [dm3] 2R_24989272_SNP [dm6]	C	T	1.393e^-4	0.888	INTRON CG3829	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14778764	2R_14778764_SNP [dm3] 2R_18891259_SNP [dm6]	A	C	1.395e^-4	0.888	INTRON sano
X	18479515	X_18479515_SNP [dm3] X_18585482_SNP [dm6]	C	G	1.406e^-4	0.888	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18327046	2R_18327046_SNP [dm3] 2R_22439541_SNP [dm6]	C	T	1.406e^-4	0.888	INTERGENIC
2R	14116344	2R_14116344_DEL [dm3] 2R_18228839_DEL [dm6]	GTTAACTC	G	1.409e^-4	0.888	DOWNSTREAM CR45310 EXON CR45311
2L	17867870	2L_17867870_SNP [dm3] 2L_17867870_SNP [dm6]	G	A	1.411e^-4	0.888	INTRON CadN2
2R	18321407	2R_18321407_SNP [dm3] 2R_22433902_SNP [dm6]	G	A	1.414e^-4	0.888	INTERGENIC
2R	11446080	2R_11446080_SNP [dm3] 2R_15558575_SNP [dm6]	C	T	1.415e^-4	0.888	SYNONYMOUS_CODING CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da
3R	19863749	3R_19863749_SNP [dm3] 3R_24038027_SNP [dm6]	C	G	1.423e^-4	0.888	UPSTREAM spas & 1 other INTRON Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19854973	3R_19854973_SNP [dm3] 3R_24029251_SNP [dm6]	A	G	1.432e^-4	0.888	INTRON KrT95D
X	2999922	X_2999922_SNP [dm3] X_3105889_SNP [dm6]	G	A	1.434e^-4	0.888	INTRON kirre
2R	5298184	2R_5298184_SNP [dm3] 2R_9410679_SNP [dm6]	T	C	1.454e^-4	0.888	INTRON wun
2L	3939899	2L_3939899_SNP [dm3] 2L_3939899_SNP [dm6]	C	A	1.455e^-4	0.888	INTRON fred
2L	15102132	2L_15102132_SNP [dm3] 2L_15102132_SNP [dm6]	T	A	1.457e^-4	0.888	INTERGENIC
3L	9763639	3L_9763639_SNP [dm3] 3L_9770539_SNP [dm6]	G	C	1.461e^-4	0.888	INTRON CG8177
2R	13531679	2R_13531679_SNP [dm3] 2R_17644174_SNP [dm6]	C	A	1.463e^-4	0.888	INTERGENIC
X	16746829	X_16746829_SNP [dm3] X_16852796_SNP [dm6]	A	T	1.469e^-4	0.888	INTRON CG13003
2L	6830952	2L_6830952_SNP [dm3] 2L_6830952_SNP [dm6]	A	G	1.469e^-4	0.888	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5589297	3L_5589297_SNP [dm3] 3L_5596197_SNP [dm6]	T	C	1.471e^-4	0.888	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4072841	3L_4072841_SNP [dm3] 3L_4072841_SNP [dm6]	C	T	1.471e^-4	0.888	NON_SYNONYMOUS_CODING Faa
2R	11283987	2R_11283987_SNP [dm3] 2R_15396482_SNP [dm6]	T	G	1.473e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18556474	2R_18556474_INS [dm3] 2R_22668969_INS [dm6]	T	AA	1.478e^-4	0.888	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16115716	3R_16115716_SNP [dm3] 3R_20289994_SNP [dm6]	A	C	1.487e^-4	0.89	NON_SYNONYMOUS_CODING cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10873408	3L_10873408_SNP [dm3] 3L_10880308_SNP [dm6]	A	T	1.489e^-4	0.89	DOWNSTREAM CG6409 & 1 other INTERGENIC
X	14712227	X_14712227_SNP [dm3] X_14818194_SNP [dm6]	A	T	1.504e^-4	0.895	INTRON rut	TF binding site BDTNP1_TFBS_twi
3R	22014665	3R_22014665_SNP [dm3] 3R_26188943_SNP [dm6]	G	A	1.520e^-4	0.902	UPSTREAM CG6073 DOWNSTREAM CG34130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15928340	2R_15928340_SNP [dm3] 2R_20040835_SNP [dm6]	G	T	1.536e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
2L	5250221	2L_5250221_SNP [dm3] 2L_5250221_SNP [dm6]	T	C	1.541e^-4	0.902	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16772861	3L_16772861_SNP [dm3] 3L_16779761_SNP [dm6]	G	A	1.544e^-4	0.902	UPSTREAM CG9705 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	17232916	X_17232916_SNP [dm3] X_17338883_SNP [dm6]	T	C	1.547e^-4	0.902	INTERGENIC
3R	9185364	3R_9185364_SNP [dm3] 3R_13359642_SNP [dm6]	C	A	1.559e^-4	0.902	INTERGENIC
X	20524874	X_20524874_SNP [dm3] X_20653847_SNP [dm6]	T	A	1.560e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3946832	2L_3946832_SNP [dm3] 2L_3946832_SNP [dm6]	T	A	1.563e^-4	0.902	INTRON fred
3L	6912317	3L_6912317_SNP [dm3] 3L_6919217_SNP [dm6]	G	A	1.587e^-4	0.902	INTERGENIC
2L	3939900	2L_3939900_SNP [dm3] 2L_3939900_SNP [dm6]	C	A	1.588e^-4	0.902	INTRON fred
3L	10168260	3L_10168260_SNP [dm3] 3L_10175160_SNP [dm6]	T	A	1.591e^-4	0.902	INTRON dpr10
2R	9707636	2R_9707636_SNP [dm3] 2R_13820131_SNP [dm6]	T	C	1.598e^-4	0.902	UTR_3_PRIME fl_2_d DOWNSTREAM stj
3L	4073141	3L_4073141_SNP [dm3] 3L_4073141_SNP [dm6]	A	G	1.600e^-4	0.902	DOWNSTREAM Gad1 INTRON Faa
2R	7371185	2R_7371185_SNP [dm3] 2R_11483680_SNP [dm6]	A	G	1.602e^-4	0.902	INTRON inv
2L	15927099	2L_15927099_SNP [dm3] 2L_15927099_SNP [dm6]	G	A	1.602e^-4	0.902	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site mE1_TFBS_HSA
2L	3960926	2L_3960926_INS [dm3] 2L_3960926_INS [dm6]	G	GGCAATTTTTAAAAATTACT...	1.619e^-4	0.902	INTRON fred
3R	6683608	3R_6683608_SNP [dm3] 3R_10857886_SNP [dm6]	T	C	1.625e^-4	0.902	UTR_3_PRIME CG4570 DOWNSTREAM CG14694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21906504	3R_21906504_DEL [dm3] 3R_26080782_DEL [dm6]	AAATATGGGATACA...	A	1.628e^-4	0.902	INTRON dys
2L	547540	2L_547540_SNP [dm3] 2L_547540_SNP [dm6]	G	A	1.631e^-4	0.902	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24358092	3R_24358092_SNP [dm3] 3R_28532370_SNP [dm6]	C	T	1.635e^-4	0.902	INTRON Ppn	TF binding site mE1_TFBS_chinmo
2L	3950239	2L_3950239_SNP [dm3] 2L_3950239_SNP [dm6]	A	T	1.639e^-4	0.902	INTRON fred
3R	22031961	3R_22031961_SNP [dm3] 3R_26206239_SNP [dm6]	T	A	1.641e^-4	0.902	INTRON CR44320
2L	6603828	2L_6603828_SNP [dm3] 2L_6603828_SNP [dm6]	G	T	1.642e^-4	0.902	INTERGENIC
X	13198539	X_13198539_SNP [dm3] X_13304506_SNP [dm6]	C	T	1.643e^-4	0.902	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14952836	2L_14952836_SNP [dm3] 2L_14952836_SNP [dm6]	A	T	1.646e^-4	0.902	INTRON CG42313
2R	9180989	2R_9180989_SNP [dm3] 2R_13293484_SNP [dm6]	A	C	1.652e^-4	0.902	INTRON Dh31-R
2L	655258	2L_655258_SNP [dm3] 2L_655258_SNP [dm6]	C	A	1.654e^-4	0.902	INTRON ds
2R	13609021	2R_13609021_SNP [dm3] 2R_17721516_SNP [dm6]	G	A	1.657e^-4	0.902	UPSTREAM CG10934 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15330964	3R_15330964_SNP [dm3] 3R_19505242_SNP [dm6]	T	C	1.658e^-4	0.902	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16281568	2R_16281568_SNP [dm3] 2R_20394063_SNP [dm6]	T	G	1.665e^-4	0.902	INTERGENIC
2R	6462040	2R_6462040_SNP [dm3] 2R_10574535_SNP [dm6]	C	T	1.666e^-4	0.902	INTRON psq	TF binding site BDTNP1_TFBS_dl
2L	4206216	2L_4206216_SNP [dm3] 2L_4206216_SNP [dm6]	C	T	1.699e^-4	0.902	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	6661399	3R_6661399_SNP [dm3] 3R_10835677_SNP [dm6]	C	T	1.704e^-4	0.902	INTRON Cad86C
2R	19201762	2R_19201762_SNP [dm3] 2R_23314239_SNP [dm6]	C	G	1.708e^-4	0.902	UPSTREAM HP1Lcsd INTERGENIC
X	20525546	X_20525546_SNP [dm3] X_20654519_SNP [dm6]	G	C	1.711e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22970400	3L_22970400_SNP [dm3] 3L_22977300_SNP [dm6]	C	G	1.713e^-4	0.902	INTERGENIC	transposable element FlyBase
X	14712274	X_14712274_SNP [dm3] X_14818241_SNP [dm6]	A	T	1.722e^-4	0.902	INTRON rut	TF binding site BDTNP1_TFBS_twi
2L	8011026	2L_8011026_DEL [dm3] 2L_8011026_DEL [dm6]	TGAAGGAACAT...	T	1.723e^-4	0.902	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	11551455	X_11551455_SNP [dm3] X_11657422_SNP [dm6]	C	T	1.724e^-4	0.902	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11081504	2R_11081504_SNP [dm3] 2R_15193999_SNP [dm6]	C	A	1.725e^-4	0.902	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
2L	5056153	2L_5056153_SNP [dm3] 2L_5056153_SNP [dm6]	A	G	1.727e^-4	0.902	UTR_3_PRIME CG31918 DOWNSTREAM His3.3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17063036	2R_17063036_SNP [dm3] 2R_21175531_SNP [dm6]	A	G	1.760e^-4	0.902	SYNONYMOUS_CODING Pu	TF binding site mE1_TFBS_Trl
2L	3931705	2L_3931705_SNP [dm3] 2L_3931705_SNP [dm6]	T	G	1.761e^-4	0.902	INTRON fred
2R	20698499	2R_20698499_SNP [dm3] 2R_24810976_SNP [dm6]	A	T	1.763e^-4	0.902	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	17884043	2L_17884043_SNP [dm3] 2L_17884043_SNP [dm6]	C	T	1.777e^-4	0.902	INTERGENIC
3L	1631139	3L_1631139_SNP [dm3] 3L_1631139_SNP [dm6]	A	G	1.777e^-4	0.902	UTR_3_PRIME nSyb DOWNSTREAM nSyb
3R	6570475	3R_6570475_SNP [dm3] 3R_10744753_SNP [dm6]	A	C	1.779e^-4	0.902	INTRON TkR86C
3R	10139391	3R_10139391_SNP [dm3] 3R_14313669_SNP [dm6]	G	A	1.787e^-4	0.902	INTRON CG31321
2L	6122223	2L_6122223_SNP [dm3] 2L_6122223_SNP [dm6]	T	A	1.803e^-4	0.902	INTRON stai
X	21470420	X_21470420_SNP [dm3] X_21599393_SNP [dm6]	G	T	1.806e^-4	0.902	INTERGENIC
2R	12508375	2R_12508375_SNP [dm3] 2R_16620870_SNP [dm6]	G	A	1.811e^-4	0.902	INTRON CG5065	TF binding site mE1_TFBS_cad
2L	5198589	2L_5198589_SNP [dm3] 2L_5198589_SNP [dm6]	A	G	1.815e^-4	0.902	INTRON Msp300	TF binding site mE1_TFBS_chinmo
X	4270082	X_4270082_SNP [dm3] X_4376049_SNP [dm6]	A	C	1.818e^-4	0.902	EXON CR45484
X	11793524	X_11793524_SNP [dm3] X_11899491_SNP [dm6]	A	G	1.820e^-4	0.902	UTR_3_PRIME wisp DOWNSTREAM Upf1
3L	7685171	3L_7685171_SNP [dm3] 3L_7692071_SNP [dm6]	T	C	1.820e^-4	0.902	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
3L	20402824	3L_20402824_SNP [dm3] 3L_20409724_SNP [dm6]	C	T	1.821e^-4	0.902	INTRON CG13248	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3939894	2L_3939894_SNP [dm3] 2L_3939894_SNP [dm6]	A	T	1.823e^-4	0.902	INTRON fred
X	19668510	X_19668510_SNP [dm3] X_19774477_SNP [dm6]	A	G	1.825e^-4	0.902	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15996631	2R_15996631_SNP [dm3] 2R_20109126_SNP [dm6]	A	G	1.828e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10785502	2L_10785502_SNP [dm3] 2L_10785502_SNP [dm6]	T	A	1.833e^-4	0.902	DOWNSTREAM CR44582 INTRON CG31869
X	5455153	X_5455153_SNP [dm3] X_5561120_SNP [dm6]	G	A	1.835e^-4	0.902	UPSTREAM Vsx2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	18900969	2R_18900969_SNP [dm3] 2R_23013446_SNP [dm6]	A	G	1.837e^-4	0.902	INTRON twi & 1 other	TF binding site mE1_TFBS_chinmo
2R	18243735	2R_18243735_SNP [dm3] 2R_22356230_SNP [dm6]	A	G	1.842e^-4	0.902	INTRON Liprin-gamma
2L	17419906	2L_17419906_SNP [dm3] 2L_17419906_SNP [dm6]	C	T	1.850e^-4	0.902	INTRON Dif
X	18479569	X_18479569_SNP [dm3] X_18585536_SNP [dm6]	C	T	1.858e^-4	0.902	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19608712	2R_19608712_SNP [dm3] 2R_23721189_SNP [dm6]	G	T	1.859e^-4	0.902	UPSTREAM CR45325 INTRON Sesn
X	12512897	X_12512897_INS [dm3] X_12618864_INS [dm6]	T	TG	1.867e^-4	0.902	INTRON CG11085	TF binding site mE1_TFBS_inv
2R	1328817	2R_1328817_DEL [dm3] 2R_5441312_DEL [dm6]	TTAAAA	T	1.871e^-4	0.902	INTRON laccase2
2R	18557368	2R_18557368_SNP [dm3] 2R_22669863_SNP [dm6]	G	T	1.876e^-4	0.902	UPSTREAM RYBP INTRON CG13516	TF binding site mE1_TFBS_chinmo
2L	13109793	2L_13109793_SNP [dm3] 2L_13109793_SNP [dm6]	G	A	1.887e^-4	0.902	DOWNSTREAM CG5142 INTERGENIC
2L	632750	2L_632750_SNP [dm3] 2L_632750_SNP [dm6]	C	A	1.892e^-4	0.902	INTERGENIC
2L	14221398	2L_14221398_SNP [dm3] 2L_14221398_SNP [dm6]	G	C	1.899e^-4	0.902	INTRON Dyrk2
2R	2079909	2R_2079909_SNP [dm3] 2R_6192404_SNP [dm6]	G	A	1.906e^-4	0.902	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3R	20717054	3R_20717054_SNP [dm3] 3R_24891332_SNP [dm6]	C	A	1.912e^-4	0.902	INTRON CG31121
3L	1130117	3L_1130117_SNP [dm3] 3L_1130117_SNP [dm6]	T	C	1.923e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
2L	3327202	2L_3327202_SNP [dm3] 2L_3327202_SNP [dm6]	A	G	1.923e^-4	0.902	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3R	6681932	3R_6681932_SNP [dm3] 3R_10856210_SNP [dm6]	A	T	1.927e^-4	0.902	UTR_3_PRIME CG4511 UPSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	967042	3L_967042_SNP [dm3] 3L_967042_SNP [dm6]	G	T	1.927e^-4	0.902	INTRON Glut1
3L	15721991	3L_15721991_SNP [dm3] 3L_15728891_SNP [dm6]	C	T	1.935e^-4	0.902	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11344045	2R_11344045_SNP [dm3] 2R_15456540_SNP [dm6]	C	T	1.940e^-4	0.902	SYNONYMOUS_CODING CG43729	TF binding site mE1_TFBS_chinmo
2L	3407498	2L_3407498_SNP [dm3] 2L_3407498_SNP [dm6]	C	T	1.942e^-4	0.902	SYNONYMOUS_CODING pgant2
3R	10115186	3R_10115186_SNP [dm3] 3R_14289464_SNP [dm6]	G	C	1.943e^-4	0.902	UPSTREAM CG12207 DOWNSTREAM CR45596 INTRON CG12207
2L	6271159	2L_6271159_SNP [dm3] 2L_6271159_SNP [dm6]	T	C	1.947e^-4	0.902	INTRON Ddr EXON CR42735
2L	1367090	2L_1367090_SNP [dm3] 2L_1367090_SNP [dm6]	G	C	1.950e^-4	0.902	UPSTREAM CG14346 INTERGENIC
3R	18438714	3R_18438714_SNP [dm3] 3R_22612992_SNP [dm6]	A	T	1.955e^-4	0.902	NON_SYNONYMOUS_CODING CG31156 UPSTREAM EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17825227	2L_17825227_SNP [dm3] 2L_17825227_SNP [dm6]	C	G	1.959e^-4	0.902	INTRON CadN2
2L	5244893	2L_5244893_SNP [dm3] 2L_5244893_SNP [dm6]	T	C	1.964e^-4	0.902	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
3L	1129245	3L_1129245_SNP [dm3] 3L_1129245_SNP [dm6]	A	G	1.966e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
2L	9193551	2L_9193551_SNP [dm3] 2L_9193551_SNP [dm6]	G	T	1.968e^-4	0.902	INTRON tai
3R	22021674	3R_22021674_SNP [dm3] 3R_26195952_SNP [dm6]	G	T	1.970e^-4	0.902	INTRON CR44320
2L	3243092	2L_3243092_SNP [dm3] 2L_3243092_SNP [dm6]	G	A	1.977e^-4	0.902	INTERGENIC
2R	11988600	2R_11988600_SNP [dm3] 2R_16101095_SNP [dm6]	T	A	1.987e^-4	0.902	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	6765779	2R_6765779_SNP [dm3] 2R_10878274_SNP [dm6]	C	T	1.997e^-4	0.902	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4802571	X_4802571_SNP [dm3] X_4908538_SNP [dm6]	C	A	1.999e^-4	0.902	SYNONYMOUS_CODING CG6927 UPSTREAM CG32772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
2R	18278477	2R_18278477_SNP [dm3] 2R_22390972_SNP [dm6]	A	G	2.001e^-4	0.902	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18332702	2R_18332702_SNP [dm3] 2R_22445197_SNP [dm6]	T	C	2.004e^-4	0.902	INTERGENIC
2L	20051271	2L_20051271_SNP [dm3] 2L_20051271_SNP [dm6]	G	T	2.009e^-4	0.902	INTRON sNPF
3R	24344736	3R_24344736_INS [dm3] 3R_28519014_INS [dm6]	C	CG	2.013e^-4	0.902	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
X	18487097	X_18487097_SNP [dm3] X_18593064_SNP [dm6]	A	T	2.036e^-4	0.902	INTERGENIC
2L	11743750	2L_11743750_SNP [dm3] 2L_11743750_SNP [dm6]	A	C	2.040e^-4	0.902	INTRON Vha100-5 EXON CR44144
2R	11990965	2R_11990965_SNP [dm3] 2R_16103460_SNP [dm6]	C	A	2.043e^-4	0.902	UPSTREAM Rho1 & 1 other INTRON Rho1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19890025	2L_19890025_SNP [dm3] 2L_19890025_SNP [dm6]	A	G	2.047e^-4	0.902	DOWNSTREAM CG10481 INTRON sick
2L	17180108	2L_17180108_SNP [dm3] 2L_17180108_SNP [dm6]	G	A	2.055e^-4	0.902	UPSTREAM Gr36c DOWNSTREAM Gr36b INTERGENIC
3L	1129249	3L_1129249_SNP [dm3] 3L_1129249_SNP [dm6]	A	T	2.055e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
2R	9695740	2R_9695740_SNP [dm3] 2R_13808235_SNP [dm6]	C	T	2.059e^-4	0.902	INTRON stj
2R	18067031	2R_18067031_SNP [dm3] 2R_22179526_SNP [dm6]	T	G	2.059e^-4	0.902	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15730744	3L_15730744_SNP [dm3] 3L_15737644_SNP [dm6]	T	A	2.073e^-4	0.902	INTERGENIC
3L	20467038	3L_20467038_SNP [dm3] 3L_20473938_SNP [dm6]	T	G	2.073e^-4	0.902	NON_SYNONYMOUS_CODING CG5969 UPSTREAM CG32428 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	17392080	2R_17392080_SNP [dm3] 2R_21504575_SNP [dm6]	A	C	2.079e^-4	0.902	INTRON MESK2	TF binding site mE1_TFBS_inv
2L	3939907	2L_3939907_SNP [dm3] 2L_3939907_SNP [dm6]	G	T	2.081e^-4	0.902	INTRON fred
3R	23959025	3R_23959025_SNP [dm3] 3R_28133303_SNP [dm6]	A	G	2.081e^-4	0.902	INTERGENIC
2L	17832018	2L_17832018_SNP [dm3] 2L_17832018_SNP [dm6]	G	C	2.087e^-4	0.902	INTRON CadN2	TF binding site BDTNP1_TFBS_twi
X	18487631	X_18487631_SNP [dm3] X_18593598_SNP [dm6]	C	G	2.088e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18600342	2L_18600342_SNP [dm3] 2L_18600342_SNP [dm6]	A	G	2.088e^-4	0.902	UTR_3_PRIME CG10413	regulatory region REDfly_CRMs
2L	8267180	2L_8267180_INS [dm3] 2L_8267180_INS [dm6]	C	CC	2.111e^-4	0.902	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2R	13530337	2R_13530337_SNP [dm3] 2R_17642832_SNP [dm6]	G	T	2.116e^-4	0.902	INTERGENIC
2L	3901854	2L_3901854_SNP [dm3] 2L_3901854_SNP [dm6]	C	A	2.119e^-4	0.902	INTRON capu
X	16181700	X_16181700_SNP [dm3] X_16287667_SNP [dm6]	A	G	2.120e^-4	0.902	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
2L	10495724	2L_10495724_SNP [dm3] 2L_10495724_SNP [dm6]	T	C	2.129e^-4	0.902	INTRON Myo31DF
3L	22970367	3L_22970367_SNP [dm3] 3L_22977267_SNP [dm6]	G	A	2.129e^-4	0.902	INTERGENIC	transposable element FlyBase
3R	15331033	3R_15331033_SNP [dm3] 3R_19505311_SNP [dm6]	G	T	2.129e^-4	0.902	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4073137	3L_4073137_SNP [dm3] 3L_4073137_SNP [dm6]	A	G	2.139e^-4	0.902	DOWNSTREAM Gad1 INTRON Faa
3R	6514649	3R_6514649_SNP [dm3] 3R_10688927_SNP [dm6]	T	C	2.141e^-4	0.902	INTRON Skeletor
3L	17376077	3L_17376077_SNP [dm3] 3L_17382977_SNP [dm6]	G	A	2.146e^-4	0.902	UPSTREAM CG13728 DOWNSTREAM CG13731 INTERGENIC
2L	17990404	2L_17990404_SNP [dm3] 2L_17990404_SNP [dm6]	A	G	2.146e^-4	0.902	UPSTREAM Prosbeta5R2 INTERGENIC
3L	16173490	3L_16173490_DEL [dm3] 3L_16180390_DEL [dm6]	AAATTCAAATATGCTATACG...	A	2.148e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16173511	3L_16173511_DEL [dm3] 3L_16180411_DEL [dm6]	CTA	C	2.148e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16173522	3L_16173522_DEL [dm3] 3L_16180422_DEL [dm6]	TTATGCAATTGCATTTTGCA...	T	2.148e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8267088	2L_8267088_SNP [dm3] 2L_8267088_SNP [dm6]	A	C	2.149e^-4	0.902	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	8267110	2L_8267110_SNP [dm3] 2L_8267110_SNP [dm6]	T	A	2.149e^-4	0.902	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	536744	2L_536744_SNP [dm3] 2L_536744_SNP [dm6]	A	G	2.156e^-4	0.902	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	659661	2L_659661_SNP [dm3] 2L_659661_SNP [dm6]	G	T	2.167e^-4	0.902	INTRON ds
2L	9196470	2L_9196470_SNP [dm3] 2L_9196470_SNP [dm6]	G	A	2.174e^-4	0.902	INTRON tai
2R	12845723	2R_12845723_SNP [dm3] 2R_16958218_SNP [dm6]	G	A	2.183e^-4	0.902	DOWNSTREAM PIG-V & 1 other INTRON CG6665	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19910322	2L_19910322_SNP [dm3] 2L_19910322_SNP [dm6]	T	C	2.194e^-4	0.902	SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
2R	16597565	2R_16597565_SNP [dm3] 2R_20710060_SNP [dm6]	C	G	2.201e^-4	0.902	INTRON dpr
2R	15928344	2R_15928344_SNP [dm3] 2R_20040839_SNP [dm6]	C	T	2.203e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
3L	13239951	3L_13239951_SNP [dm3] 3L_13246851_SNP [dm6]	A	C	2.204e^-4	0.902	DOWNSTREAM CG32119 INTRON caps
2L	4960215	2L_4960215_SNP [dm3] 2L_4960215_SNP [dm6]	C	T	2.204e^-4	0.902	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12854944	2R_12854944_SNP [dm3] 2R_16967439_SNP [dm6]	A	T	2.205e^-4	0.902	UPSTREAM tRNA:G3:53E INTERGENIC
3L	12069809	3L_12069809_SNP [dm3] 3L_12076709_SNP [dm6]	G	A	2.208e^-4	0.902	INTRON Sema-5c
2R	15763698	2R_15763698_SNP [dm3] 2R_19876193_SNP [dm6]	C	T	2.209e^-4	0.902	INTERGENIC
2L	20013139	2L_20013139_SNP [dm3] 2L_20013139_SNP [dm6]	C	A	2.215e^-4	0.902	INTRON CG43861
X	16753234	X_16753234_SNP [dm3] X_16859201_SNP [dm6]	C	A	2.221e^-4	0.902	INTRON CG13003
2L	6235392	2L_6235392_SNP [dm3] 2L_6235392_SNP [dm6]	C	G	2.225e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	10873409	3L_10873409_DEL [dm3] 3L_10880309_DEL [dm6]	AA	A	2.226e^-4	0.902	DOWNSTREAM CG6409 & 1 other INTERGENIC
2R	2024617	2R_2024617_INS [dm3] 2R_6137112_INS [dm6]	T	TTAT	2.238e^-4	0.902	UPSTREAM CG14589 INTRON EcR
2L	207133	2L_207133_SNP [dm3] 2L_207133_SNP [dm6]	A	G	2.250e^-4	0.902	UPSTREAM Tbc1d15-17 & 1 other INTRON CG11617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12748973	3L_12748973_SNP [dm3] 3L_12755873_SNP [dm6]	T	C	2.253e^-4	0.902	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_sens
3R	6503439	3R_6503439_SNP [dm3] 3R_10677717_SNP [dm6]	G	A	2.258e^-4	0.902	UPSTREAM CG6465 DOWNSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	8267213	2L_8267213_SNP [dm3] 2L_8267213_SNP [dm6]	C	T	2.265e^-4	0.902	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	3938432	X_3938432_SNP [dm3] X_4044399_SNP [dm6]	C	T	2.271e^-4	0.902	INTERGENIC
3L	20398426	3L_20398426_SNP [dm3] 3L_20405326_SNP [dm6]	C	T	2.272e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12845617	2R_12845617_SNP [dm3] 2R_16958112_SNP [dm6]	A	G	2.273e^-4	0.902	SYNONYMOUS_CODING CG6665 DOWNSTREAM PIG-V & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23884454	3R_23884454_SNP [dm3] 3R_28058732_SNP [dm6]	G	C	2.276e^-4	0.902	INTRON CG34362
2L	7602136	2L_7602136_SNP [dm3] 2L_7602136_SNP [dm6]	T	A	2.276e^-4	0.902	INTERGENIC
X	20671744	X_20671744_DEL [dm3] X_20800717_DEL [dm6]	AA	A	2.278e^-4	0.902	INTRON shakB	TF binding site mE1_TFBS_HSA
2L	17837225	2L_17837225_SNP [dm3] 2L_17837225_SNP [dm6]	T	C	2.280e^-4	0.902	INTRON CadN2
2L	9273540	2L_9273540_SNP [dm3] 2L_9273540_SNP [dm6]	A	G	2.282e^-4	0.902	INTRON Ggamma30A
2L	9191196	2L_9191196_INS [dm3] 2L_9191196_INS [dm6]	T	TT	2.288e^-4	0.902	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15811723	X_15811723_SNP [dm3] X_15917690_SNP [dm6]	A	T	2.291e^-4	0.902	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17832003	2L_17832003_SNP [dm3] 2L_17832003_SNP [dm6]	A	T	2.293e^-4	0.902	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26091914	3R_26091914_SNP [dm3] 3R_30266192_SNP [dm6]	G	C	2.300e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14302112	3R_14302112_SNP [dm3] 3R_18476390_SNP [dm6]	A	G	2.310e^-4	0.903	INTRON fru
3L	2440426	3L_2440426_SNP [dm3] 3L_2440426_SNP [dm6]	A	T	2.315e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
3L	20153891	3L_20153891_SNP [dm3] 3L_20160791_SNP [dm6]	C	T	2.318e^-4	0.903	INTRON CG42674
2L	17840030	2L_17840030_DEL [dm3] 2L_17840030_DEL [dm6]	TA	T	2.323e^-4	0.903	INTRON CadN2
2L	8011078	2L_8011078_SNP [dm3] 2L_8011078_SNP [dm6]	A	C	2.327e^-4	0.903	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	20318868	X_20318868_SNP [dm3] X_20447841_SNP [dm6]	G	A	2.338e^-4	0.905	INTERGENIC
3L	16266222	3L_16266222_SNP [dm3] 3L_16273122_SNP [dm6]	A	T	2.345e^-4	0.905	INTRON CG13066
2R	2080139	2R_2080139_SNP [dm3] 2R_6192634_SNP [dm6]	T	C	2.353e^-4	0.905	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3L	5474474	3L_5474474_SNP [dm3] 3L_5481374_SNP [dm6]	T	A	2.356e^-4	0.905	SYNONYMOUS_CODING CG4835
2L	17989907	2L_17989907_SNP [dm3] 2L_17989907_SNP [dm6]	A	C	2.356e^-4	0.905	UPSTREAM Prosbeta5R2 INTERGENIC
3R	13274280	3R_13274280_SNP [dm3] 3R_17448558_SNP [dm6]	A	T	2.362e^-4	0.905	INTRON Eh
X	2816128	X_2816128_SNP [dm3] X_2922095_SNP [dm6]	T	C	2.366e^-4	0.905	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
X	2865827	X_2865827_SNP [dm3] X_2971794_SNP [dm6]	T	A	2.382e^-4	0.908	INTRON kirre & 1 other
2L	659654	2L_659654_DEL [dm3] 2L_659654_DEL [dm6]	CC	T	2.385e^-4	0.908	INTRON ds
3L	15727706	3L_15727706_SNP [dm3] 3L_15734606_SNP [dm6]	C	A	2.390e^-4	0.908	INTERGENIC
3L	22970402	3L_22970402_SNP [dm3] 3L_22977302_SNP [dm6]	T	A	2.391e^-4	0.908	INTERGENIC	transposable element FlyBase
3L	2875187	3L_2875187_SNP [dm3] 3L_2875187_SNP [dm6]	G	A	2.417e^-4	0.913	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22031977	3R_22031977_SNP [dm3] 3R_26206255_SNP [dm6]	G	A	2.419e^-4	0.913	INTRON CR44320
2R	11988599	2R_11988599_SNP [dm3] 2R_16101094_SNP [dm6]	T	C	2.424e^-4	0.913	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	4360206	2L_4360206_SNP [dm3] 2L_4360206_SNP [dm6]	G	T	2.425e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs
2L	17818960	2L_17818960_SNP [dm3] 2L_17818960_SNP [dm6]	G	T	2.438e^-4	0.916	INTRON CadN2
2R	7529524	2R_7529524_DEL [dm3] 2R_11642019_DEL [dm6]	AGGG	A	2.457e^-4	0.917	UTR_3_PRIME CG9003 DOWNSTREAM CG9003
2R	14095325	2R_14095325_SNP [dm3] 2R_18207820_SNP [dm6]	G	A	2.469e^-4	0.917	UTR_5_PRIME CG30114
2L	3947627	2L_3947627_SNP [dm3] 2L_3947627_SNP [dm6]	A	G	2.470e^-4	0.917	INTRON fred
3R	22020953	3R_22020953_SNP [dm3] 3R_26195231_SNP [dm6]	C	A	2.470e^-4	0.917	UPSTREAM CR44320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18487626	X_18487626_SNP [dm3] X_18593593_SNP [dm6]	G	A	2.472e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10168267	3L_10168267_SNP [dm3] 3L_10175167_SNP [dm6]	T	G	2.475e^-4	0.917	INTRON dpr10
3L	4073127	3L_4073127_SNP [dm3] 3L_4073127_SNP [dm6]	A	G	2.477e^-4	0.917	DOWNSTREAM Gad1 INTRON Faa
3L	6793986	3L_6793986_SNP [dm3] 3L_6800886_SNP [dm6]	C	A	2.478e^-4	0.917	INTERGENIC
2R	21138349	2R_21138349_SNP [dm3] 2R_25250826_SNP [dm6]	T	C	2.495e^-4	0.921	UPSTREAM CG33680 INTRON CG9380	transposable element FlyBase
3R	20565799	3R_20565799_SNP [dm3] 3R_24740077_SNP [dm6]	T	A	2.502e^-4	0.921	INTRON tok
2L	11540155	2L_11540155_SNP [dm3] 2L_11540155_SNP [dm6]	T	C	2.506e^-4	0.921	INTERGENIC
2R	9696649	2R_9696649_SNP [dm3] 2R_13809144_SNP [dm6]	G	A	2.511e^-4	0.921	INTRON stj
2L	5144558	2L_5144558_SNP [dm3] 2L_5144558_SNP [dm6]	G	T	2.514e^-4	0.921	NON_SYNONYMOUS_CODING Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	3031069	2R_3031069_SNP [dm3] 2R_7143564_SNP [dm6]	T	A	2.518e^-4	0.921	INTERGENIC
3L	11617301	3L_11617301_DEL [dm3] 3L_11624201_DEL [dm6]	ACAATA	A	2.533e^-4	0.922	SPLICE_SITE_REGION CG6084 UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	9749386	3L_9749386_SNP [dm3] 3L_9756286_SNP [dm6]	G	A	2.534e^-4	0.922	INTRON CG42268
3L	16788561	3L_16788561_SNP [dm3] 3L_16795461_SNP [dm6]	C	T	2.544e^-4	0.922	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad
X	14712215	X_14712215_SNP [dm3] X_14818182_SNP [dm6]	G	T	2.546e^-4	0.922	INTRON rut	TF binding site BDTNP1_TFBS_twi
3L	23928493	3L_23928493_SNP [dm3] 3L_23935393_SNP [dm6]	A	G	2.551e^-4	0.922	INTRON CG40470
X	16179159	X_16179159_SNP [dm3] X_16285126_SNP [dm6]	C	A	2.561e^-4	0.922	UTR_3_PRIME eas DOWNSTREAM CG32576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17718760	2R_17718760_SNP [dm3] 2R_21831255_SNP [dm6]	G	A	2.565e^-4	0.922	INTRON CG13492
3L	9227947	3L_9227947_SNP [dm3] 3L_9234847_SNP [dm6]	C	G	2.566e^-4	0.922	DOWNSTREAM CG4483 INTERGENIC
3R	21906385	3R_21906385_SNP [dm3] 3R_26080663_SNP [dm6]	A	G	2.570e^-4	0.922	INTRON dys
2R	13436703	2R_13436703_SNP [dm3] 2R_17549198_SNP [dm6]	G	A	2.572e^-4	0.922	NON_SYNONYMOUS_CODING MESR4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	20613849	X_20613849_SNP [dm3] X_20742822_SNP [dm6]	A	T	2.580e^-4	0.922	INTERGENIC
2L	3214333	2L_3214333_SNP [dm3] 2L_3214333_SNP [dm6]	T	C	2.580e^-4	0.922	INTERGENIC
2R	1370622	2R_1370622_SNP [dm3] 2R_5483117_SNP [dm6]	T	G	2.596e^-4	0.926	INTRON CG30440	transposable element FlyBase
3L	9822907	3L_9822907_SNP [dm3] 3L_9829807_SNP [dm6]	T	G	2.606e^-4	0.927	UTR_5_PRIME CG43897 INTRON CG43897
2L	1459204	2L_1459204_SNP [dm3] 2L_1459204_SNP [dm6]	C	T	2.611e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11445736	2R_11445736_SNP [dm3] 2R_15558231_SNP [dm6]	G	A	2.619e^-4	0.928	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	14712279	X_14712279_SNP [dm3] X_14818246_SNP [dm6]	T	C	2.639e^-4	0.928	INTRON rut	TF binding site BDTNP1_TFBS_twi
X	10649151	X_10649151_SNP [dm3] X_10755118_SNP [dm6]	C	T	2.648e^-4	0.928	INTRON Rph
X	14712229	X_14712229_SNP [dm3] X_14818196_SNP [dm6]	A	C	2.656e^-4	0.928	INTRON rut	TF binding site BDTNP1_TFBS_twi
2L	3940349	2L_3940349_SNP [dm3] 2L_3940349_SNP [dm6]	C	T	2.660e^-4	0.928	INTRON fred
3L	1467308	3L_1467308_SNP [dm3] 3L_1467308_SNP [dm6]	T	C	2.663e^-4	0.928	SYNONYMOUS_CODING rho INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22299169	3R_22299169_SNP [dm3] 3R_26473447_SNP [dm6]	T	C	2.672e^-4	0.928	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18467934	2R_18467934_SNP [dm3] 2R_22580429_SNP [dm6]	A	G	2.675e^-4	0.928	INTRON dnr1
3L	15731605	3L_15731605_SNP [dm3] 3L_15738505_SNP [dm6]	C	G	2.677e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20719700	3R_20719700_SNP [dm3] 3R_24893978_SNP [dm6]	A	T	2.678e^-4	0.928	UPSTREAM CG11069 INTRON CG31121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18321293	2R_18321293_SNP [dm3] 2R_22433788_SNP [dm6]	T	A	2.678e^-4	0.928	INTERGENIC
3L	15729090	3L_15729090_SNP [dm3] 3L_15735990_SNP [dm6]	G	A	2.681e^-4	0.928	INTERGENIC
X	16189694	X_16189694_DEL [dm3] X_16295661_DEL [dm6]	AC	A	2.690e^-4	0.928	INTRON CG9911
2L	17153484	2L_17153484_SNP [dm3] 2L_17153484_SNP [dm6]	A	C	2.694e^-4	0.928	INTRON beat-IIIa & 1 other
2R	17001273	2R_17001273_SNP [dm3] 2R_21113768_SNP [dm6]	C	A	2.696e^-4	0.928	INTRON ktub
3R	26679088	3R_26679088_SNP [dm3] 3R_30853366_SNP [dm6]	G	A	2.699e^-4	0.928	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17197125	2L_17197125_SNP [dm3] 2L_17197125_SNP [dm6]	G	T	2.701e^-4	0.928	INTRON beat-IIIc
2L	14359257	2L_14359257_SNP [dm3] 2L_14359257_SNP [dm6]	G	C	2.702e^-4	0.928	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10586326	2R_10586326_SNP [dm3] 2R_14698821_SNP [dm6]	G	T	2.723e^-4	0.928	INTRON mspo
3L	13716007	3L_13716007_SNP [dm3] 3L_13722907_SNP [dm6]	G	C	2.724e^-4	0.928	INTRON bru-3
3R	6683699	3R_6683699_SNP [dm3] 3R_10857977_SNP [dm6]	T	G	2.732e^-4	0.928	UTR_3_PRIME CG4570 DOWNSTREAM CG14694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20845638	3R_20845638_SNP [dm3] 3R_25019916_SNP [dm6]	G	A	2.745e^-4	0.928	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19920060	2L_19920060_SNP [dm3] 2L_19920060_SNP [dm6]	A	G	2.747e^-4	0.928	INTRON sick EXON CR43828
X	8121649	X_8121649_SNP [dm3] X_8227616_SNP [dm6]	A	C	2.748e^-4	0.928	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	747866	2L_747866_SNP [dm3] 2L_747866_SNP [dm6]	C	T	2.750e^-4	0.928	INTERGENIC
2L	9360866	2L_9360866_SNP [dm3] 2L_9360866_SNP [dm6]	T	C	2.753e^-4	0.928	INTERGENIC
3R	26216992	3R_26216992_SNP [dm3] 3R_30391270_SNP [dm6]	C	T	2.753e^-4	0.928	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2220058	3L_2220058_SNP [dm3] 3L_2220058_SNP [dm6]	T	A	2.757e^-4	0.928	INTERGENIC
2R	20875736	2R_20875736_SNP [dm3] 2R_24988213_SNP [dm6]	C	A	2.760e^-4	0.928	UTR_5_PRIME CG3829	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23489760	3R_23489760_SNP [dm3] 3R_27664038_SNP [dm6]	A	T	2.762e^-4	0.928	INTRON unc80	TF binding site mE1_TFBS_inv
3L	15714973	3L_15714973_SNP [dm3] 3L_15721873_SNP [dm6]	A	T	2.777e^-4	0.929	UTR_3_PRIME comm DOWNSTREAM comm
2R	2020043	2R_2020043_SNP [dm3] 2R_6132538_SNP [dm6]	T	A	2.782e^-4	0.929	UPSTREAM EcR INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3813530	2L_3813530_SNP [dm3] 2L_3813530_SNP [dm6]	A	T	2.789e^-4	0.929	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	8821341	2R_8821341_SNP [dm3] 2R_12933836_SNP [dm6]	C	T	2.791e^-4	0.929	UTR_5_PRIME CG17019 DOWNSTREAM CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19862812	3R_19862812_SNP [dm3] 3R_24037090_SNP [dm6]	G	T	2.798e^-4	0.929	SYNONYMOUS_CODING Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	16272971	2R_16272971_SNP [dm3] 2R_20385466_SNP [dm6]	C	G	2.799e^-4	0.929	INTERGENIC
X	11551444	X_11551444_SNP [dm3] X_11657411_SNP [dm6]	C	G	2.803e^-4	0.929	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18467066	2R_18467066_SNP [dm3] 2R_22579561_SNP [dm6]	T	A	2.808e^-4	0.929	INTRON dnr1
3L	15726333	3L_15726333_SNP [dm3] 3L_15733233_SNP [dm6]	A	T	2.827e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11617591	3L_11617591_SNP [dm3] 3L_11624491_SNP [dm6]	A	T	2.829e^-4	0.929	UPSTREAM CG6084 DOWNSTREAM CG6083 INTERGENIC
2R	11449042	2R_11449042_SNP [dm3] 2R_15561537_SNP [dm6]	T	A	2.836e^-4	0.929	INTRON CG12963
2R	9696267	2R_9696267_SNP [dm3] 2R_13808762_SNP [dm6]	G	A	2.837e^-4	0.929	INTRON stj
2L	659657	2L_659657_SNP [dm3] 2L_659657_SNP [dm6]	C	A	2.844e^-4	0.929	INTRON ds
2R	12845740	2R_12845740_SNP [dm3] 2R_16958235_SNP [dm6]	C	A	2.849e^-4	0.929	DOWNSTREAM PIG-V & 1 other INTRON CG6665	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2611942	2L_2611942_SNP [dm3] 2L_2611942_SNP [dm6]	A	T	2.854e^-4	0.929	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19369192	2R_19369192_SNP [dm3] 2R_23481669_SNP [dm6]	A	G	2.855e^-4	0.929	INTRON CG43795
3R	15814003	3R_15814003_SNP [dm3] 3R_19988281_SNP [dm6]	G	T	2.857e^-4	0.929	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8267132	2L_8267132_SNP [dm3] 2L_8267132_SNP [dm6]	A	C	2.858e^-4	0.929	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	5198566	2L_5198566_SNP [dm3] 2L_5198566_SNP [dm6]	T	A	2.861e^-4	0.929	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2L	2817492	2L_2817492_SNP [dm3] 2L_2817492_SNP [dm6]	A	G	2.862e^-4	0.929	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11904196	2L_11904196_SNP [dm3] 2L_11904196_SNP [dm6]	G	T	2.875e^-4	0.931	INTRON Pde1c
3L	15437607	3L_15437607_SNP [dm3] 3L_15444507_SNP [dm6]	C	T	2.887e^-4	0.931	INTERGENIC
2L	8267085	2L_8267085_SNP [dm3] 2L_8267085_SNP [dm6]	T	C	2.898e^-4	0.931	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	20250681	X_20250681_SNP [dm3] X_20379654_SNP [dm6]	C	A	2.904e^-4	0.931	INTERGENIC
2L	7227353	2L_7227353_SNP [dm3] 2L_7227353_SNP [dm6]	T	C	2.908e^-4	0.931	SPLICE_SITE_REGION Ndae1 UPSTREAM CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	14946336	2L_14946336_SNP [dm3] 2L_14946336_SNP [dm6]	C	T	2.918e^-4	0.931	INTRON CG42313
2R	9643912	2R_9643912_SNP [dm3] 2R_13756407_SNP [dm6]	A	T	2.923e^-4	0.931	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
2R	87814	2R_87814_DEL [dm3] 2R_4200309_DEL [dm6]	AGGAAGCGTTTCAGTCTAA...	A	2.926e^-4	0.931	INTERGENIC
2L	13987804	2L_13987804_SNP [dm3] 2L_13987804_SNP [dm6]	T	A	2.927e^-4	0.931	INTRON rk
2R	12364888	2R_12364888_SNP [dm3] 2R_16477383_SNP [dm6]	G	A	2.936e^-4	0.931	INTERGENIC
3L	15733227	3L_15733227_SNP [dm3] 3L_15740127_SNP [dm6]	T	A	2.947e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12512137	2L_12512137_SNP [dm3] 2L_12512137_SNP [dm6]	G	C	2.948e^-4	0.931	INTRON bun
2L	5143999	2L_5143999_SNP [dm3] 2L_5143999_SNP [dm6]	A	G	2.953e^-4	0.931	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	17837291	2L_17837291_SNP [dm3] 2L_17837291_SNP [dm6]	C	A	2.959e^-4	0.931	INTRON CadN2
2L	3875370	2L_3875370_SNP [dm3] 2L_3875370_SNP [dm6]	T	C	2.961e^-4	0.931	INTRON capu	TF binding site mE1_TFBS_chinmo
2R	18985817	2R_18985817_DEL [dm3] 2R_23098294_DEL [dm6]	TATTGT	T	2.965e^-4	0.931	INTERGENIC
3R	21807982	3R_21807982_SNP [dm3] 3R_25982260_SNP [dm6]	T	A	2.967e^-4	0.931	UTR_3_PRIME CG42261 UPSTREAM Nf1
2L	6227476	2L_6227476_SNP [dm3] 2L_6227476_SNP [dm6]	T	C	2.969e^-4	0.931	DOWNSTREAM Ugt37b1 INTERGENIC
2L	15479195	2L_15479195_SNP [dm3] 2L_15479195_SNP [dm6]	A	G	2.971e^-4	0.931	UPSTREAM sna INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4040547	2L_4040547_SNP [dm3] 2L_4040547_SNP [dm6]	C	A	2.975e^-4	0.931	INTRON ed
3L	22145600	3L_22145600_SNP [dm3] 3L_22152500_SNP [dm6]	G	T	2.975e^-4	0.931	INTRON olf413
3L	23942912	3L_23942912_SNP [dm3] 3L_23949812_SNP [dm6]	G	C	2.984e^-4	0.931	INTRON CG40470
X	12623594	X_12623594_DEL [dm3] X_12729561_DEL [dm6]	TTG	AC	2.988e^-4	0.931	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14829550	2L_14829550_SNP [dm3] 2L_14829550_SNP [dm6]	T	C	2.989e^-4	0.931	INTERGENIC
2R	18985838	2R_18985838_SNP [dm3] 2R_23098315_SNP [dm6]	T	C	2.994e^-4	0.931	INTERGENIC
3L	16872753	3L_16872753_SNP [dm3] 3L_16879653_SNP [dm6]	G	A	2.998e^-4	0.931	DOWNSTREAM CG32170 INTRON Lmpt
2L	15108021	2L_15108021_SNP [dm3] 2L_15108021_SNP [dm6]	C	T	3.006e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9192346	3L_9192346_SNP [dm3] 3L_9199246_SNP [dm6]	G	C	3.013e^-4	0.931	INTERGENIC
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	3.021e^-4	0.931	INTRON dpr6
2L	19917749	2L_19917749_SNP [dm3] 2L_19917749_SNP [dm6]	C	T	3.027e^-4	0.931	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
3R	23611015	3R_23611015_SNP [dm3] 3R_27785293_SNP [dm6]	C	A	3.047e^-4	0.931	INTRON CG34353
3R	7304183	3R_7304183_SNP [dm3] 3R_11478461_SNP [dm6]	T	C	3.050e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18754112	3R_18754112_SNP [dm3] 3R_22928390_SNP [dm6]	C	T	3.050e^-4	0.931	INTRON klg	TF binding site mE1_TFBS_cad
2L	19630128	2L_19630128_SNP [dm3] 2L_19630128_SNP [dm6]	C	T	3.053e^-4	0.931	INTRON Lar
2L	5198639	2L_5198639_SNP [dm3] 2L_5198639_SNP [dm6]	T	C	3.057e^-4	0.931	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	10781573	3L_10781573_SNP [dm3] 3L_10788473_SNP [dm6]	G	T	3.066e^-4	0.931	UPSTREAM CR44545 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16883167	X_16883167_SNP [dm3] X_16989134_SNP [dm6]	T	A	3.074e^-4	0.931	INTRON CG45002
3R	9177951	3R_9177951_SNP [dm3] 3R_13352229_SNP [dm6]	A	G	3.081e^-4	0.931	INTERGENIC
2L	550972	2L_550972_SNP [dm3] 2L_550972_SNP [dm6]	T	G	3.083e^-4	0.931	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20484009	3L_20484009_SNP [dm3] 3L_20490909_SNP [dm6]	G	T	3.088e^-4	0.931	INTRON ZnT77C
2L	5107146	2L_5107146_SNP [dm3] 2L_5107146_SNP [dm6]	A	G	3.098e^-4	0.931	INTRON Msp300	TF binding site mE1_TFBS_Trl
2L	5689225	2L_5689225_SNP [dm3] 2L_5689225_SNP [dm6]	G	C	3.098e^-4	0.931	INTERGENIC
3L	11617597	3L_11617597_SNP [dm3] 3L_11624497_SNP [dm6]	T	C	3.099e^-4	0.931	UPSTREAM CG6084 DOWNSTREAM CG6083 INTERGENIC
2L	7227380	2L_7227380_SNP [dm3] 2L_7227380_SNP [dm6]	T	C	3.115e^-4	0.931	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_inv
3R	23958986	3R_23958986_SNP [dm3] 3R_28133264_SNP [dm6]	A	T	3.117e^-4	0.931	INTERGENIC
2L	6229148	2L_6229148_SNP [dm3] 2L_6229148_SNP [dm6]	T	G	3.125e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17021969	2L_17021969_SNP [dm3] 2L_17021969_SNP [dm6]	G	T	3.126e^-4	0.931	INTERGENIC
2R	7078093	2R_7078093_SNP [dm3] 2R_11190588_SNP [dm6]	G	A	3.129e^-4	0.931	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	11439833	2L_11439833_SNP [dm3] 2L_11439833_SNP [dm6]	A	T	3.130e^-4	0.931	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19863799	3R_19863799_SNP [dm3] 3R_24038077_SNP [dm6]	G	A	3.130e^-4	0.931	START_GAINED Miro UTR_5_PRIME Miro UPSTREAM spas & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6542832	3R_6542832_SNP [dm3] 3R_10717110_SNP [dm6]	T	C	3.131e^-4	0.931	INTERGENIC
3R	24344888	3R_24344888_SNP [dm3] 3R_28519166_SNP [dm6]	C	T	3.144e^-4	0.931	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2R	20695963	2R_20695963_SNP [dm3] 2R_24808440_SNP [dm6]	T	A	3.160e^-4	0.931	UPSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	587205	2R_587205_SNP [dm3] 2R_4699700_SNP [dm6]	G	T	3.165e^-4	0.931	INTRON Nipped-B	transposable element FlyBase
2L	5620890	2L_5620890_SNP [dm3] 2L_5620890_SNP [dm6]	C	G	3.179e^-4	0.931	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	5143975	2L_5143975_SNP [dm3] 2L_5143975_SNP [dm6]	G	A	3.182e^-4	0.931	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2R	16205122	2R_16205122_SNP [dm3] 2R_20317617_SNP [dm6]	A	G	3.184e^-4	0.931	SYNONYMOUS_CODING CG13871 UPSTREAM CG13868	TF binding site mE1_TFBS_cad
2L	3941642	2L_3941642_SNP [dm3] 2L_3941642_SNP [dm6]	C	A	3.187e^-4	0.931	INTRON fred
2L	8267160	2L_8267160_SNP [dm3] 2L_8267160_SNP [dm6]	C	T	3.189e^-4	0.931	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	4248422	2L_4248422_SNP [dm3] 2L_4248422_SNP [dm6]	G	A	3.192e^-4	0.931	INTRON CR44059
3R	6662995	3R_6662995_SNP [dm3] 3R_10837273_SNP [dm6]	T	C	3.195e^-4	0.931	INTRON Cad86C
2R	10968305	2R_10968305_SNP [dm3] 2R_15080800_SNP [dm6]	A	G	3.205e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
X	655602	X_655602_INS [dm3] X_761569_INS [dm6]	T	TTCGGATTCCC...	3.208e^-4	0.931	UTR_3_PRIME CG5273 UPSTREAM CR44965 DOWNSTREAM RpL22	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20115483	2L_20115483_SNP [dm3] 2L_20115483_SNP [dm6]	T	C	3.211e^-4	0.931	INTERGENIC
2L	8267061	2L_8267061_SNP [dm3] 2L_8267061_SNP [dm6]	A	T	3.211e^-4	0.931	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	2831375	2R_2831375_SNP [dm3] 2R_6943870_SNP [dm6]	G	A	3.213e^-4	0.931	SYNONYMOUS_CODING CheB42b DOWNSTREAM CheB42c INTRON mim
3R	10748891	3R_10748891_SNP [dm3] 3R_14923169_SNP [dm6]	T	C	3.214e^-4	0.931	DOWNSTREAM CR45598 & 1 other INTERGENIC
3R	18201305	3R_18201305_DEL [dm3] 3R_22375583_DEL [dm6]	AAAACAATGTA...	A	3.217e^-4	0.931	UPSTREAM CG18596 DOWNSTREAM CG7069 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10592278	2R_10592278_SNP [dm3] 2R_14704773_SNP [dm6]	G	A	3.234e^-4	0.931	INTRON mspo
X	1625912	X_1625912_SNP [dm3] X_1731879_SNP [dm6]	A	G	3.234e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10711549	2L_10711549_SNP [dm3] 2L_10711549_SNP [dm6]	T	G	3.234e^-4	0.931	DOWNSTREAM CR44407 INTERGENIC
2L	3950302	2L_3950302_SNP [dm3] 2L_3950302_SNP [dm6]	C	T	3.238e^-4	0.931	INTRON fred
3R	26683885	3R_26683885_SNP [dm3] 3R_30858163_SNP [dm6]	C	G	3.243e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_sens
2L	546566	2L_546566_SNP [dm3] 2L_546566_SNP [dm6]	A	G	3.258e^-4	0.931	SPLICE_SITE_REGION nAChRbeta3 SYNONYMOUS_CODING nAChRbeta3 UTR_3_PRIME Ets21C DOWNSTREAM Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5383364	3L_5383364_SNP [dm3] 3L_5390264_SNP [dm6]	T	C	3.258e^-4	0.931	INTERGENIC
X	20250659	X_20250659_SNP [dm3] X_20379632_SNP [dm6]	T	G	3.272e^-4	0.931	INTERGENIC
3R	9730478	3R_9730478_SNP [dm3] 3R_13904756_SNP [dm6]	C	T	3.275e^-4	0.931	DOWNSTREAM ems INTERGENIC
2L	17876336	2L_17876336_SNP [dm3] 2L_17876336_SNP [dm6]	C	A	3.287e^-4	0.931	INTERGENIC
3L	14125517	3L_14125517_SNP [dm3] 3L_14132417_SNP [dm6]	A	G	3.291e^-4	0.931	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17900428	3R_17900428_SNP [dm3] 3R_22074706_SNP [dm6]	A	T	3.293e^-4	0.931	UTR_3_PRIME how
3R	6542833	3R_6542833_DEL [dm3] 3R_10717111_DEL [dm6]	CT	C	3.299e^-4	0.931	INTERGENIC
3R	23982224	3R_23982224_SNP [dm3] 3R_28156502_SNP [dm6]	A	T	3.300e^-4	0.931	INTRON CG34354
3L	5787450	3L_5787450_SNP [dm3] 3L_5794350_SNP [dm6]	T	G	3.311e^-4	0.931	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	13530392	2R_13530392_SNP [dm3] 2R_17642887_SNP [dm6]	A	T	3.325e^-4	0.931	INTERGENIC
2R	13946737	2R_13946737_SNP [dm3] 2R_18059232_SNP [dm6]	A	T	3.330e^-4	0.931	UPSTREAM CR45314 INTERGENIC
3R	18803921	3R_18803921_SNP [dm3] 3R_22978199_SNP [dm6]	A	T	3.333e^-4	0.931	DOWNSTREAM CG17244 INTERGENIC
3L	18344215	3L_18344215_SNP [dm3] 3L_18351115_SNP [dm6]	A	T	3.337e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14543110	2R_14543110_DEL [dm3] 2R_18655605_DEL [dm6]	ATACAAA	TC	3.346e^-4	0.931	INTRON SP2637	TF binding site BDTNP1_TFBS_prd
2R	8880423	2R_8880423_SNP [dm3] 2R_12992918_SNP [dm6]	A	G	3.352e^-4	0.931	UPSTREAM CG33798 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8880441	2R_8880441_SNP [dm3] 2R_12992936_SNP [dm6]	A	C	3.352e^-4	0.931	UPSTREAM CG33798 INTERGENIC
2R	8880451	2R_8880451_SNP [dm3] 2R_12992946_SNP [dm6]	C	T	3.352e^-4	0.931	UPSTREAM CG33798 INTERGENIC
X	20454046	X_20454046_SNP [dm3] X_20583019_SNP [dm6]	C	T	3.353e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1121968	3L_1121968_SNP [dm3] 3L_1121968_SNP [dm6]	G	A	3.359e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24288639	3R_24288639_SNP [dm3] 3R_28462917_SNP [dm6]	T	C	3.364e^-4	0.931	INTRON beat-VI
3L	4657711	3L_4657711_SNP [dm3] 3L_4657711_SNP [dm6]	A	G	3.368e^-4	0.931	INTRON axo	TF binding site mE1_TFBS_inv
3R	13418787	3R_13418787_SNP [dm3] 3R_17593065_SNP [dm6]	A	T	3.374e^-4	0.931	INTERGENIC
3L	17705194	3L_17705194_SNP [dm3] 3L_17712094_SNP [dm6]	G	A	3.374e^-4	0.931	INTRON Ccn
2L	4851930	2L_4851930_SNP [dm3] 2L_4851930_SNP [dm6]	C	T	3.376e^-4	0.931	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17850371	2L_17850371_SNP [dm3] 2L_17850371_SNP [dm6]	T	A	3.382e^-4	0.931	INTRON CadN2
2R	18329719	2R_18329719_SNP [dm3] 2R_22442214_SNP [dm6]	A	T	3.382e^-4	0.931	INTERGENIC
2R	16742494	2R_16742494_SNP [dm3] 2R_20854989_SNP [dm6]	T	C	3.386e^-4	0.931	INTERGENIC
2L	6741768	2L_6741768_SNP [dm3] 2L_6741768_SNP [dm6]	C	T	3.396e^-4	0.931	UPSTREAM CG11221 INTERGENIC
2L	14227702	2L_14227702_SNP [dm3] 2L_14227702_SNP [dm6]	T	C	3.399e^-4	0.931	INTRON Dyrk2
3L	5667002	3L_5667002_SNP [dm3] 3L_5673902_SNP [dm6]	A	G	3.400e^-4	0.931	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1610427	3L_1610427_SNP [dm3] 3L_1610427_SNP [dm6]	T	C	3.404e^-4	0.931	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2L	19715469	2L_19715469_SNP [dm3] 2L_19715469_SNP [dm6]	A	G	3.405e^-4	0.931	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	20481761	3L_20481761_SNP [dm3] 3L_20488661_SNP [dm6]	T	G	3.405e^-4	0.931	INTRON ZnT77C
2L	17832023	2L_17832023_DEL [dm3] 2L_17832023_DEL [dm6]	AA	A	3.408e^-4	0.931	INTRON CadN2	TF binding site BDTNP1_TFBS_twi
2R	4375884	2R_4375884_SNP [dm3] 2R_8488379_SNP [dm6]	G	C	3.410e^-4	0.931	INTRON mtt
3R	25602811	3R_25602811_SNP [dm3] 3R_29777089_SNP [dm6]	G	A	3.414e^-4	0.931	INTRON kay
2L	7002983	2L_7002983_SNP [dm3] 2L_7002983_SNP [dm6]	C	T	3.429e^-4	0.933	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	16391937	2L_16391937_SNP [dm3] 2L_16391937_SNP [dm6]	G	A	3.432e^-4	0.933	INTERGENIC
2L	2599425	2L_2599425_SNP [dm3] 2L_2599425_SNP [dm6]	T	G	3.444e^-4	0.933	INTRON CR44790
3L	15725422	3L_15725422_SNP [dm3] 3L_15732322_SNP [dm6]	A	T	3.456e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9050373	2R_9050373_SNP [dm3] 2R_13162868_SNP [dm6]	G	C	3.460e^-4	0.933	UTR_3_PRIME Nrk DOWNSTREAM CG15870
3R	25602348	3R_25602348_SNP [dm3] 3R_29776626_SNP [dm6]	C	A	3.468e^-4	0.933	INTRON kay
2R	19813233	2R_19813233_SNP [dm3] 2R_23925710_SNP [dm6]	C	A	3.470e^-4	0.933	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8880527	2R_8880527_SNP [dm3] 2R_12993022_SNP [dm6]	T	A	3.473e^-4	0.933	UPSTREAM CG33798 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9177943	3R_9177943_SNP [dm3] 3R_13352221_SNP [dm6]	A	T	3.477e^-4	0.933	INTERGENIC
2L	7908053	2L_7908053_SNP [dm3] 2L_7908053_SNP [dm6]	T	C	3.482e^-4	0.933	INTRON Snoo
X	11232414	X_11232414_SNP [dm3] X_11338381_SNP [dm6]	G	T	3.486e^-4	0.933	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	21503718	3R_21503718_SNP [dm3] 3R_25677996_SNP [dm6]	G	A	3.489e^-4	0.933	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CG5039 DOWNSTREAM Lgr3	TF binding site mE1_TFBS_sens
3R	18001701	3R_18001701_SNP [dm3] 3R_22175979_SNP [dm6]	C	T	3.491e^-4	0.933	INTRON SKIP
X	17120601	X_17120601_SNP [dm3] X_17226568_SNP [dm6]	C	T	3.494e^-4	0.933	UTR_5_PRIME CG10598 UPSTREAM CG10598
3L	16773113	3L_16773113_SNP [dm3] 3L_16780013_SNP [dm6]	G	C	3.501e^-4	0.933	UPSTREAM CG9705 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19863728	3R_19863728_SNP [dm3] 3R_24038006_SNP [dm6]	T	A	3.502e^-4	0.933	SPLICE_SITE_ACCEPTOR Miro UPSTREAM spas & 1 other INTRON Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10444250	2R_10444250_SNP [dm3] 2R_14556745_SNP [dm6]	G	A	3.550e^-4	0.939	INTRON ttv
3R	10748898	3R_10748898_SNP [dm3] 3R_14923176_SNP [dm6]	C	T	3.572e^-4	0.939	DOWNSTREAM CR45598 & 1 other INTERGENIC
3L	10679921	3L_10679921_SNP [dm3] 3L_10686821_SNP [dm6]	C	T	3.572e^-4	0.939	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2849442	2L_2849442_SNP [dm3] 2L_2849442_SNP [dm6]	C	T	3.572e^-4	0.939	UTR_3_PRIME CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad
2L	3950315	2L_3950315_SNP [dm3] 2L_3950315_SNP [dm6]	C	A	3.573e^-4	0.939	INTRON fred
3R	19324063	3R_19324063_SNP [dm3] 3R_23498341_SNP [dm6]	A	T	3.583e^-4	0.939	INTERGENIC
3R	20389762	3R_20389762_SNP [dm3] 3R_24564040_SNP [dm6]	A	C	3.597e^-4	0.939	INTRON CG13624
2R	18166701	2R_18166701_SNP [dm3] 2R_22279196_SNP [dm6]	A	C	3.604e^-4	0.939	INTRON dve
3L	13715960	3L_13715960_SNP [dm3] 3L_13722860_SNP [dm6]	C	A	3.611e^-4	0.939	INTRON bru-3
X	9790343	X_9790343_INS [dm3] X_9896310_INS [dm6]	A	AACAAACAA	3.616e^-4	0.939	INTRON CG15249
2R	13191615	2R_13191615_INS [dm3] 2R_17304110_INS [dm6]	G	GGG	3.618e^-4	0.939	INTRON mbl
2L	5250414	2L_5250414_SNP [dm3] 2L_5250414_SNP [dm6]	G	A	3.620e^-4	0.939	INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5250497	2L_5250497_SNP [dm3] 2L_5250497_SNP [dm6]	T	C	3.620e^-4	0.939	INTRON tkv	TF binding site mE1_TFBS_HSA
X	1625788	X_1625788_SNP [dm3] X_1731755_SNP [dm6]	A	C	3.621e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16121513	3R_16121513_SNP [dm3] 3R_20295791_SNP [dm6]	C	T	3.640e^-4	0.939	SYNONYMOUS_CODING cic	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17671620	3R_17671620_SNP [dm3] 3R_21845898_SNP [dm6]	T	G	3.648e^-4	0.939	SYNONYMOUS_CODING Gr93d UPSTREAM Gr93c EXON CR44087
2R	17391770	2R_17391770_SNP [dm3] 2R_21504265_SNP [dm6]	A	G	3.651e^-4	0.939	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	18985979	2R_18985979_INS [dm3] 2R_23098456_INS [dm6]	G	GAG	3.651e^-4	0.939	INTERGENIC
X	15288791	X_15288791_SNP [dm3] X_15394758_SNP [dm6]	A	T	3.662e^-4	0.939	INTRON Cngl
3R	18438686	3R_18438686_SNP [dm3] 3R_22612964_SNP [dm6]	A	G	3.669e^-4	0.939	NON_SYNONYMOUS_CODING CG31156 UPSTREAM EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17618073	X_17618073_SNP [dm3] X_17724040_SNP [dm6]	A	T	3.671e^-4	0.939	INTRON CG42684
2L	14221627	2L_14221627_SNP [dm3] 2L_14221627_SNP [dm6]	T	G	3.677e^-4	0.939	INTRON Dyrk2
3R	22023053	3R_22023053_SNP [dm3] 3R_26197331_SNP [dm6]	A	C	3.677e^-4	0.939	INTRON CR44320
2R	19369155	2R_19369155_SNP [dm3] 2R_23481632_SNP [dm6]	A	T	3.682e^-4	0.939	INTRON CG43795
2L	13581683	2L_13581683_SNP [dm3] 2L_13581683_SNP [dm6]	T	C	3.683e^-4	0.939	UPSTREAM CR44973 INTRON kuz
2L	8011100	2L_8011100_SNP [dm3] 2L_8011100_SNP [dm6]	C	T	3.702e^-4	0.939	UPSTREAM Tg & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	22970386	3L_22970386_SNP [dm3] 3L_22977286_SNP [dm6]	C	T	3.702e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	8906183	2L_8906183_SNP [dm3] 2L_8906183_SNP [dm6]	G	C	3.703e^-4	0.939	INTRON CG34398
3L	2226259	3L_2226259_SNP [dm3] 3L_2226259_SNP [dm6]	T	A	3.706e^-4	0.939	INTERGENIC
3R	22360528	3R_22360528_SNP [dm3] 3R_26534806_SNP [dm6]	C	T	3.710e^-4	0.939	UTR_5_PRIME plum INTRON plum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16384835	2L_16384835_DEL [dm3] 2L_16384835_DEL [dm6]	CCGCCAAGTTGCTTTCCACA...	C	3.715e^-4	0.939	INTERGENIC
2R	18467910	2R_18467910_SNP [dm3] 2R_22580405_SNP [dm6]	C	T	3.725e^-4	0.939	INTRON dnr1
3L	12886294	3L_12886294_SNP [dm3] 3L_12893194_SNP [dm6]	G	T	3.726e^-4	0.939	INTRON CG14118
3R	16122891	3R_16122891_SNP [dm3] 3R_20297169_SNP [dm6]	C	T	3.732e^-4	0.939	NON_SYNONYMOUS_CODING cic INTRON cic
X	2999912	X_2999912_SNP [dm3] X_3105879_SNP [dm6]	G	A	3.743e^-4	0.939	INTRON kirre
2R	12856764	2R_12856764_SNP [dm3] 2R_16969259_SNP [dm6]	C	T	3.747e^-4	0.939	UPSTREAM CR44377 INTERGENIC
3R	20054116	3R_20054116_SNP [dm3] 3R_24228394_SNP [dm6]	C	T	3.750e^-4	0.939	UTR_3_PRIME CG13609 & 1 other UPSTREAM Acp95EF DOWNSTREAM Spase22-23
3R	25777059	3R_25777059_SNP [dm3] 3R_29951337_SNP [dm6]	A	T	3.752e^-4	0.939	UTR_3_PRIME TkR99D
2L	562762	2L_562762_SNP [dm3] 2L_562762_SNP [dm6]	G	A	3.758e^-4	0.939	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	18001702	3R_18001702_SNP [dm3] 3R_22175980_SNP [dm6]	C	A	3.760e^-4	0.939	INTRON SKIP
2L	17884011	2L_17884011_INS [dm3] 2L_17884011_INS [dm6]	C	CAT	3.761e^-4	0.939	INTERGENIC
2R	3879764	2R_3879764_SNP [dm3] 2R_7992259_SNP [dm6]	C	A	3.761e^-4	0.939	UPSTREAM ACC DOWNSTREAM Nup44A EXON CR44272
2R	11988597	2R_11988597_SNP [dm3] 2R_16101092_SNP [dm6]	A	C	3.763e^-4	0.939	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
X	16179176	X_16179176_SNP [dm3] X_16285143_SNP [dm6]	C	A	3.769e^-4	0.939	UTR_3_PRIME eas DOWNSTREAM CG32576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10665793	2R_10665793_SNP [dm3] 2R_14778288_SNP [dm6]	G	T	3.769e^-4	0.939	INTRON kn	regulatory region REDfly_CRMs
2L	2817498	2L_2817498_SNP [dm3] 2L_2817498_SNP [dm6]	A	G	3.771e^-4	0.939	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19862253	3R_19862253_SNP [dm3] 3R_24036531_SNP [dm6]	A	G	3.776e^-4	0.939	SYNONYMOUS_CODING Miro	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2001544	2R_2001544_SNP [dm3] 2R_6114039_SNP [dm6]	A	T	3.776e^-4	0.939	INTRON EcR
X	16419576	X_16419576_SNP [dm3] X_16525543_SNP [dm6]	T	A	3.778e^-4	0.939	UPSTREAM Cnx14D INTRON para	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14227095	2L_14227095_SNP [dm3] 2L_14227095_SNP [dm6]	A	T	3.778e^-4	0.939	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21168397	3L_21168397_SNP [dm3] 3L_21175297_SNP [dm6]	G	A	3.779e^-4	0.939	UPSTREAM chb DOWNSTREAM asparagine-synthetase INTRON chb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12130062	2R_12130062_SNP [dm3] 2R_16242557_SNP [dm6]	C	A	3.793e^-4	0.94	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2R	18245619	2R_18245619_SNP [dm3] 2R_22358114_SNP [dm6]	T	C	3.798e^-4	0.94	INTRON Liprin-gamma
3R	21365441	3R_21365441_SNP [dm3] 3R_25539719_SNP [dm6]	G	A	3.799e^-4	0.94	INTRON msi
2L	6050153	2L_6050153_SNP [dm3] 2L_6050153_SNP [dm6]	C	T	3.807e^-4	0.941	SYNONYMOUS_CODING CG12393 UPSTREAM CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
X	9465531	X_9465531_SNP [dm3] X_9571498_SNP [dm6]	C	A	3.816e^-4	0.942	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
X	12777421	X_12777421_SNP [dm3] X_12883388_SNP [dm6]	C	A	3.822e^-4	0.942	INTRON Pde9
2R	11302639	2R_11302639_SNP [dm3] 2R_15415134_SNP [dm6]	T	A	3.859e^-4	0.943	UTR_5_PRIME CG43729
2R	17718742	2R_17718742_SNP [dm3] 2R_21831237_SNP [dm6]	C	T	3.888e^-4	0.943	INTRON CG13492
2R	17765173	2R_17765173_SNP [dm3] 2R_21877668_SNP [dm6]	G	A	3.890e^-4	0.943	INTRON Fili	TF binding site mE1_TFBS_cnc
3R	13660897	3R_13660897_SNP [dm3] 3R_17835175_SNP [dm6]	A	T	3.898e^-4	0.943	INTRON tinc
2L	10011099	2L_10011099_SNP [dm3] 2L_10011099_SNP [dm6]	G	A	3.902e^-4	0.943	SYNONYMOUS_CODING Trp1
2L	17884013	2L_17884013_SNP [dm3] 2L_17884013_SNP [dm6]	C	T	3.903e^-4	0.943	INTERGENIC
3R	25089880	3R_25089880_SNP [dm3] 3R_29264158_SNP [dm6]	T	C	3.904e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22854871	3L_22854871_SNP [dm3] 3L_22861771_SNP [dm6]	C	G	3.905e^-4	0.943	DOWNSTREAM CG13239 INTERGENIC
X	16723311	X_16723311_SNP [dm3] X_16829278_SNP [dm6]	T	C	3.907e^-4	0.943	INTRON CG13004
2L	1712142	2L_1712142_SNP [dm3] 2L_1712142_SNP [dm6]	C	T	3.909e^-4	0.943	SPLICE_SITE_REGION frtz DOWNSTREAM mRpL48 INTRON frtz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18985824	2R_18985824_SNP [dm3] 2R_23098301_SNP [dm6]	T	G	3.920e^-4	0.943	INTERGENIC
3L	2009444	3L_2009444_SNP [dm3] 3L_2009444_SNP [dm6]	G	T	3.937e^-4	0.943	DOWNSTREAM CR44535 EXON CR44535
3R	5118621	3R_5118621_SNP [dm3] 3R_9292899_SNP [dm6]	C	T	3.937e^-4	0.943	DOWNSTREAM CG8861 INTERGENIC
3R	9783775	3R_9783775_SNP [dm3] 3R_13958053_SNP [dm6]	C	T	3.942e^-4	0.943	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
X	12834724	X_12834724_SNP [dm3] X_12940691_SNP [dm6]	C	T	3.944e^-4	0.943	UPSTREAM fne INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	11744146	X_11744146_SNP [dm3] X_11850113_SNP [dm6]	G	T	3.945e^-4	0.943	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC
3R	22011247	3R_22011247_SNP [dm3] 3R_26185525_SNP [dm6]	G	A	3.946e^-4	0.943	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
2R	9997748	2R_9997748_SNP [dm3] 2R_14110243_SNP [dm6]	A	C	3.958e^-4	0.943	INTRON Prosap
3R	18001714	3R_18001714_SNP [dm3] 3R_22175992_SNP [dm6]	T	C	3.959e^-4	0.943	INTRON SKIP
X	16182549	X_16182549_SNP [dm3] X_16288516_SNP [dm6]	C	A	3.961e^-4	0.943	UTR_5_PRIME CG32576 UPSTREAM caz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9695728	2R_9695728_SNP [dm3] 2R_13808223_SNP [dm6]	C	G	3.962e^-4	0.943	INTRON stj
X	1625864	X_1625864_SNP [dm3] X_1731831_SNP [dm6]	A	T	3.963e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16189750	X_16189750_SNP [dm3] X_16295717_SNP [dm6]	A	G	3.971e^-4	0.943	UPSTREAM CG3632 INTRON CG9911	TF binding site BDTNP1_TFBS_dl
3R	9729965	3R_9729965_SNP [dm3] 3R_13904243_SNP [dm6]	T	C	3.992e^-4	0.943	UTR_3_PRIME ems	TF binding site mE1_TFBS_cad
3L	22013972	3L_22013972_SNP [dm3] 3L_22020872_SNP [dm6]	C	T	3.992e^-4	0.943	INTERGENIC
2R	619420	2R_619420_SNP [dm3] 2R_4731915_SNP [dm6]	C	T	3.995e^-4	0.943	UPSTREAM CR40282 DOWNSTREAM CR45471 INTRON CR41440
2R	17373227	2R_17373227_SNP [dm3] 2R_21485722_SNP [dm6]	C	T	4.001e^-4	0.943	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17841975	2L_17841975_SNP [dm3] 2L_17841975_SNP [dm6]	G	A	4.006e^-4	0.943	INTRON CadN2
3R	6721525	3R_6721525_SNP [dm3] 3R_10895803_SNP [dm6]	A	G	4.014e^-4	0.943	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	14125523	3L_14125523_SNP [dm3] 3L_14132423_SNP [dm6]	G	A	4.027e^-4	0.943	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12391791	3L_12391791_SNP [dm3] 3L_12398691_SNP [dm6]	A	G	4.036e^-4	0.943	SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17153477	2L_17153477_SNP [dm3] 2L_17153477_SNP [dm6]	G	A	4.041e^-4	0.943	INTRON beat-IIIa & 1 other
3L	15724034	3L_15724034_SNP [dm3] 3L_15730934_SNP [dm6]	G	A	4.053e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16189720	X_16189720_SNP [dm3] X_16295687_SNP [dm6]	C	T	4.056e^-4	0.943	UPSTREAM CG3632 INTRON CG9911	TF binding site BDTNP1_TFBS_dl
2L	19731594	2L_19731594_SNP [dm3] 2L_19731594_SNP [dm6]	G	A	4.058e^-4	0.943	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
2L	5496162	2L_5496162_SNP [dm3] 2L_5496162_SNP [dm6]	C	A	4.061e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22856917	3L_22856917_SNP [dm3] 3L_22863817_SNP [dm6]	T	C	4.064e^-4	0.943	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5590879	X_5590879_SNP [dm3] X_5696846_SNP [dm6]	C	T	4.075e^-4	0.943	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_Trl
2R	18659045	2R_18659045_SNP [dm3] 2R_22771540_SNP [dm6]	C	A	4.079e^-4	0.943	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2440475	3L_2440475_SNP [dm3] 3L_2440475_SNP [dm6]	G	T	4.087e^-4	0.943	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6765656	2R_6765656_SNP [dm3] 2R_10878151_SNP [dm6]	T	C	4.091e^-4	0.943	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11989334	2R_11989334_SNP [dm3] 2R_16101829_SNP [dm6]	C	G	4.092e^-4	0.943	SPLICE_SITE_REGION CG8414 UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl
2L	4851933	2L_4851933_SNP [dm3] 2L_4851933_SNP [dm6]	G	A	4.098e^-4	0.943	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16792904	2L_16792904_SNP [dm3] 2L_16792904_SNP [dm6]	A	G	4.102e^-4	0.943	NON_SYNONYMOUS_CODING CG17928
2R	5862212	2R_5862212_DEL [dm3] 2R_9974707_DEL [dm6]	ATA	A	4.105e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15867306	3R_15867306_SNP [dm3] 3R_20041584_SNP [dm6]	G	A	4.105e^-4	0.943	INTRON CG17193
2R	5292086	2R_5292086_SNP [dm3] 2R_9404581_SNP [dm6]	A	T	4.109e^-4	0.943	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19332956	2L_19332956_SNP [dm3] 2L_19332956_SNP [dm6]	T	A	4.110e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	9625597	2L_9625597_SNP [dm3] 2L_9625597_SNP [dm6]	A	G	4.114e^-4	0.943	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17390370	2R_17390370_INS [dm3] 2R_21502865_INS [dm6]	T	TT	4.130e^-4	0.943	INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15714965	3L_15714965_SNP [dm3] 3L_15721865_SNP [dm6]	G	A	4.136e^-4	0.943	UTR_3_PRIME comm DOWNSTREAM comm
X	19479924	X_19479924_SNP [dm3] X_19585891_SNP [dm6]	G	A	4.141e^-4	0.943	SYNONYMOUS_CODING CG14204
X	18374285	X_18374285_SNP [dm3] X_18480252_SNP [dm6]	T	C	4.147e^-4	0.943	SYNONYMOUS_CODING Hayan UPSTREAM CG32547 EXON CR45714
3R	6734738	3R_6734738_SNP [dm3] 3R_10909016_SNP [dm6]	G	C	4.157e^-4	0.943	INTERGENIC
X	20559414	X_20559414_SNP [dm3] X_20688387_SNP [dm6]	G	A	4.159e^-4	0.943	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4836717	X_4836717_SNP [dm3] X_4942684_SNP [dm6]	T	C	4.166e^-4	0.943	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
3R	23934490	3R_23934490_SNP [dm3] 3R_28108768_SNP [dm6]	C	T	4.186e^-4	0.943	INTERGENIC
X	16181621	X_16181621_DEL [dm3] X_16287588_DEL [dm6]	AACAAAACAGA...	A	4.188e^-4	0.943	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
2R	7766059	2R_7766059_SNP [dm3] 2R_11878554_SNP [dm6]	T	C	4.191e^-4	0.943	SPLICE_SITE_REGION CG13185 INTRON CG13185
X	17241135	X_17241135_SNP [dm3] X_17347102_SNP [dm6]	A	T	4.214e^-4	0.943	INTERGENIC
3R	16121750	3R_16121750_SNP [dm3] 3R_20296028_SNP [dm6]	G	T	4.215e^-4	0.943	SYNONYMOUS_CODING cic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9698096	3R_9698096_SNP [dm3] 3R_13872374_SNP [dm6]	T	C	4.219e^-4	0.943	INTRON E5
3R	18969202	3R_18969202_SNP [dm3] 3R_23143480_SNP [dm6]	A	G	4.233e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9676544	3L_9676544_DEL [dm3] 3L_9683444_DEL [dm6]	GGTTTAAG	G	4.248e^-4	0.943	DOWNSTREAM CG6767 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	26361176	3R_26361176_SNP [dm3] 3R_30535454_SNP [dm6]	A	T	4.250e^-4	0.943	INTRON tmod
3R	22021849	3R_22021849_SNP [dm3] 3R_26196127_SNP [dm6]	G	C	4.255e^-4	0.943	INTRON CR44320
3R	15331148	3R_15331148_SNP [dm3] 3R_19505426_SNP [dm6]	T	A	4.259e^-4	0.943	INTRON Dys	TF binding site mE1_TFBS_chinmo
2L	5068248	2L_5068248_SNP [dm3] 2L_5068248_SNP [dm6]	G	C	4.267e^-4	0.943	UPSTREAM mir-2495 INTRON qtc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1969458	2R_1969458_SNP [dm3] 2R_6081953_SNP [dm6]	A	T	4.267e^-4	0.943	SYNONYMOUS_CODING Ars2 UTR_3_PRIME Ars2
2L	13571641	2L_13571641_DEL [dm3] 2L_13571641_DEL [dm6]	TC	A	4.271e^-4	0.943	INTRON kuz
2L	8900055	2L_8900055_SNP [dm3] 2L_8900055_SNP [dm6]	A	T	4.282e^-4	0.943	INTRON CG34398
2R	19226435	2R_19226435_SNP [dm3] 2R_23338912_SNP [dm6]	T	C	4.299e^-4	0.943	INTERGENIC
2L	9323915	2L_9323915_SNP [dm3] 2L_9323915_SNP [dm6]	C	T	4.308e^-4	0.943	INTERGENIC
2L	1218347	2L_1218347_SNP [dm3] 2L_1218347_SNP [dm6]	C	A	4.318e^-4	0.943	UPSTREAM CR43263 & 1 other INTERGENIC
2R	126577	2R_126577_SNP [dm3] 2R_4239072_SNP [dm6]	A	T	4.326e^-4	0.943	SYNONYMOUS_CODING IntS3
2R	13531687	2R_13531687_SNP [dm3] 2R_17644182_SNP [dm6]	G	T	4.332e^-4	0.943	INTERGENIC
2R	18544056	2R_18544056_SNP [dm3] 2R_22656551_SNP [dm6]	A	T	4.337e^-4	0.943	UPSTREAM CG43326 DOWNSTREAM CR45268 INTRON CG43325 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5589345	3L_5589345_SNP [dm3] 3L_5596245_SNP [dm6]	A	G	4.342e^-4	0.943	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4002935	2L_4002935_SNP [dm3] 2L_4002935_SNP [dm6]	C	A	4.351e^-4	0.943	INTERGENIC
2R	18466682	2R_18466682_SNP [dm3] 2R_22579177_SNP [dm6]	C	A	4.367e^-4	0.943	INTRON dnr1	TF binding site mE1_TFBS_chinmo
2L	3947238	2L_3947238_SNP [dm3] 2L_3947238_SNP [dm6]	A	G	4.371e^-4	0.943	INTRON fred
2L	9844104	2L_9844104_SNP [dm3] 2L_9844104_SNP [dm6]	C	G	4.378e^-4	0.943	INTRON nAChRalpha6
3L	11779089	3L_11779089_SNP [dm3] 3L_11785989_SNP [dm6]	C	A	4.381e^-4	0.943	DOWNSTREAM Pi3K68D INTRON Pi3K68D
2L	15920727	2L_15920727_DEL [dm3] 2L_15920727_DEL [dm6]	TTACATTGGAA...	T	4.385e^-4	0.943	INTRON beat-Ib
3L	3453863	3L_3453863_SNP [dm3] 3L_3453863_SNP [dm6]	G	C	4.385e^-4	0.943	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20402762	3L_20402762_SNP [dm3] 3L_20409662_SNP [dm6]	T	C	4.385e^-4	0.943	INTRON CG13248	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19868664	3R_19868664_SNP [dm3] 3R_24042942_SNP [dm6]	C	T	4.387e^-4	0.943	UTR_3_PRIME spas DOWNSTREAM Rox8 & 1 other
3R	18116731	3R_18116731_SNP [dm3] 3R_22291009_SNP [dm6]	T	C	4.388e^-4	0.943	INTRON SKIP
2R	18556462	2R_18556462_SNP [dm3] 2R_22668957_SNP [dm6]	T	C	4.398e^-4	0.943	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19977895	2L_19977895_SNP [dm3] 2L_19977895_SNP [dm6]	G	A	4.400e^-4	0.943	UPSTREAM CR43620 INTRON CG43861
3R	13386938	3R_13386938_SNP [dm3] 3R_17561216_SNP [dm6]	G	A	4.407e^-4	0.943	INTRON Hmx
2L	11534898	2L_11534898_SNP [dm3] 2L_11534898_SNP [dm6]	A	G	4.412e^-4	0.943	UPSTREAM CR42743 INTERGENIC
3L	11265246	3L_11265246_SNP [dm3] 3L_11272146_SNP [dm6]	C	T	4.418e^-4	0.943	INTERGENIC
2L	8011161	2L_8011161_SNP [dm3] 2L_8011161_SNP [dm6]	T	C	4.427e^-4	0.943	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6830455	2L_6830455_SNP [dm3] 2L_6830455_SNP [dm6]	T	A	4.429e^-4	0.943	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18116736	3R_18116736_SNP [dm3] 3R_22291014_SNP [dm6]	T	C	4.433e^-4	0.943	INTRON SKIP
2L	2599412	2L_2599412_SNP [dm3] 2L_2599412_SNP [dm6]	A	G	4.435e^-4	0.943	INTRON CR44790
2L	1922539	2L_1922539_SNP [dm3] 2L_1922539_SNP [dm6]	A	T	4.436e^-4	0.943	INTRON CG7337
2L	17198603	2L_17198603_SNP [dm3] 2L_17198603_SNP [dm6]	G	C	4.449e^-4	0.943	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16161748	3L_16161748_SNP [dm3] 3L_16168648_SNP [dm6]	C	A	4.462e^-4	0.943	DOWNSTREAM CG33796 INTERGENIC
2L	3687444	2L_3687444_SNP [dm3] 2L_3687444_SNP [dm6]	C	A	4.470e^-4	0.943	INTRON CG34340	TF binding site mE1_TFBS_Kr
3R	14787250	3R_14787250_SNP [dm3] 3R_18961528_SNP [dm6]	C	T	4.487e^-4	0.943	INTRON CG42613 & 1 other
3L	2681852	3L_2681852_SNP [dm3] 3L_2681852_SNP [dm6]	A	G	4.488e^-4	0.943	INTRON Fife
X	16189702	X_16189702_SNP [dm3] X_16295669_SNP [dm6]	A	C	4.493e^-4	0.943	INTRON CG9911
3L	1627764	3L_1627764_SNP [dm3] 3L_1627764_SNP [dm6]	T	C	4.501e^-4	0.943	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8322533	2L_8322533_SNP [dm3] 2L_8322533_SNP [dm6]	G	A	4.507e^-4	0.943	SYNONYMOUS_CODING CG7781	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24366365	3R_24366365_SNP [dm3] 3R_28540643_SNP [dm6]	A	C	4.510e^-4	0.943	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6639518	2R_6639518_SNP [dm3] 2R_10752013_SNP [dm6]	G	A	4.511e^-4	0.943	INTRON CG33144
2L	11194697	2L_11194697_SNP [dm3] 2L_11194697_SNP [dm6]	A	G	4.520e^-4	0.943	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	2220035	3L_2220035_SNP [dm3] 3L_2220035_SNP [dm6]	C	T	4.523e^-4	0.943	INTERGENIC
2R	11302139	2R_11302139_SNP [dm3] 2R_15414634_SNP [dm6]	T	C	4.525e^-4	0.943	INTRON CG43729
2R	13446432	2R_13446432_SNP [dm3] 2R_17558927_SNP [dm6]	C	G	4.526e^-4	0.943	INTRON Klp54D
2L	17884014	2L_17884014_SNP [dm3] 2L_17884014_SNP [dm6]	A	T	4.526e^-4	0.943	INTERGENIC
3R	21080812	3R_21080812_SNP [dm3] 3R_25255090_SNP [dm6]	C	A	4.534e^-4	0.943	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_chinmo
3R	25089830	3R_25089830_SNP [dm3] 3R_29264108_SNP [dm6]	C	T	4.537e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17021966	2L_17021966_SNP [dm3] 2L_17021966_SNP [dm6]	T	G	4.546e^-4	0.943	INTERGENIC
X	5590897	X_5590897_INS [dm3] X_5696864_INS [dm6]	A	AA	4.554e^-4	0.943	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_Trl
3L	7685350	3L_7685350_SNP [dm3] 3L_7692250_SNP [dm6]	T	C	4.560e^-4	0.943	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
X	18374702	X_18374702_SNP [dm3] X_18480669_SNP [dm6]	A	G	4.563e^-4	0.943	SYNONYMOUS_CODING Hayan EXON CR45714
X	19039122	X_19039122_SNP [dm3] X_19145089_SNP [dm6]	T	A	4.574e^-4	0.943	INTRON RhoGAP18B
2L	3333528	2L_3333528_SNP [dm3] 2L_3333528_SNP [dm6]	C	A	4.578e^-4	0.943	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
2R	127928	2R_127928_DEL [dm3] 2R_4240423_DEL [dm6]	CTCC	C	4.582e^-4	0.943	INTRON IntS3
3L	11940306	3L_11940306_DEL [dm3] 3L_11947206_DEL [dm6]	TAGCCAAAT	T	4.583e^-4	0.943	UPSTREAM CG7252 INTERGENIC
3R	18768318	3R_18768318_DEL [dm3] 3R_22942596_DEL [dm6]	CT	C	4.583e^-4	0.943	INTRON klg	TF binding site mE1_TFBS_chinmo
2L	16616558	2L_16616558_SNP [dm3] 2L_16616558_SNP [dm6]	A	G	4.583e^-4	0.943	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25089868	3R_25089868_SNP [dm3] 3R_29264146_SNP [dm6]	T	A	4.589e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7322582	2R_7322582_SNP [dm3] 2R_11435077_SNP [dm6]	T	A	4.590e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	6531872	3R_6531872_SNP [dm3] 3R_10706150_SNP [dm6]	T	A	4.590e^-4	0.943	SYNONYMOUS_CODING CG31467 UPSTREAM CG14684	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5198607	2L_5198607_SNP [dm3] 2L_5198607_SNP [dm6]	T	C	4.593e^-4	0.943	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	5474534	3L_5474534_SNP [dm3] 3L_5481434_SNP [dm6]	T	A	4.594e^-4	0.943	NON_SYNONYMOUS_CODING CG4835
3L	17358290	3L_17358290_SNP [dm3] 3L_17365190_SNP [dm6]	G	A	4.594e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2R	18900981	2R_18900981_SNP [dm3] 2R_23013458_SNP [dm6]	T	A	4.598e^-4	0.943	INTRON twi & 1 other	TF binding site mE1_TFBS_chinmo
2R	11448838	2R_11448838_SNP [dm3] 2R_15561333_SNP [dm6]	A	G	4.599e^-4	0.943	INTRON CG12963
3R	22021695	3R_22021695_DEL [dm3] 3R_26195973_DEL [dm6]	TT	T	4.600e^-4	0.943	INTRON CR44320
2R	10579746	2R_10579746_SNP [dm3] 2R_14692241_SNP [dm6]	T	C	4.607e^-4	0.943	INTRON mspo
3R	14787252	3R_14787252_SNP [dm3] 3R_18961530_SNP [dm6]	C	T	4.609e^-4	0.943	INTRON CG42613 & 1 other
2L	19920798	2L_19920798_SNP [dm3] 2L_19920798_SNP [dm6]	G	A	4.610e^-4	0.943	INTRON sick EXON CR43828
2L	10929743	2L_10929743_SNP [dm3] 2L_10929743_SNP [dm6]	T	G	4.612e^-4	0.943	INTRON dpr2
2R	8425744	2R_8425744_SNP [dm3] 2R_12538239_SNP [dm6]	T	G	4.615e^-4	0.943	INTRON fra	TF binding site mE1_TFBS_cad
2L	6830450	2L_6830450_SNP [dm3] 2L_6830450_SNP [dm6]	T	A	4.623e^-4	0.943	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	17830833	2L_17830833_SNP [dm3] 2L_17830833_SNP [dm6]	A	C	4.624e^-4	0.943	INTRON CadN2	TF binding site BDTNP1_TFBS_twi
3L	10879326	3L_10879326_SNP [dm3] 3L_10886226_SNP [dm6]	C	A	4.633e^-4	0.943	UPSTREAM CG6404 INTRON CG6404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15818271	3R_15818271_INS [dm3] 3R_19992549_INS [dm6]	G	GG	4.635e^-4	0.943	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	14117961	2R_14117961_SNP [dm3] 2R_18230456_SNP [dm6]	A	T	4.642e^-4	0.943	EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
2R	12815615	2R_12815615_SNP [dm3] 2R_16928110_SNP [dm6]	A	T	4.647e^-4	0.943	INTRON Pkc53E
2R	16703463	2R_16703463_SNP [dm3] 2R_20815958_SNP [dm6]	T	C	4.652e^-4	0.943	INTERGENIC
2R	12116686	2R_12116686_SNP [dm3] 2R_16229181_SNP [dm6]	T	C	4.652e^-4	0.943	NON_SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23935647	3R_23935647_SNP [dm3] 3R_28109925_SNP [dm6]	G	A	4.661e^-4	0.943	INTERGENIC
3L	17354922	3L_17354922_SNP [dm3] 3L_17361822_SNP [dm6]	T	C	4.663e^-4	0.943	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16173521	3L_16173521_SNP [dm3] 3L_16180421_SNP [dm6]	C	T	4.665e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3206721	2R_3206721_SNP [dm3] 2R_7319216_SNP [dm6]	T	C	4.670e^-4	0.943	UTR_3_PRIME Dscam1 DOWNSTREAM Dscam1
3R	10298167	3R_10298167_SNP [dm3] 3R_14472445_SNP [dm6]	T	C	4.671e^-4	0.943	INTRON cv-c
2L	9194920	2L_9194920_SNP [dm3] 2L_9194920_SNP [dm6]	T	A	4.678e^-4	0.943	INTRON tai
2L	6830479	2L_6830479_SNP [dm3] 2L_6830479_SNP [dm6]	G	A	4.681e^-4	0.943	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7219508	3R_7219508_SNP [dm3] 3R_11393786_SNP [dm6]	A	C	4.684e^-4	0.943	UTR_3_PRIME pros DOWNSTREAM pros
2L	920947	2L_920947_SNP [dm3] 2L_920947_SNP [dm6]	T	C	4.685e^-4	0.943	INTERGENIC
2R	18555490	2R_18555490_SNP [dm3] 2R_22667985_SNP [dm6]	T	C	4.696e^-4	0.943	UTR_5_PRIME CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
2R	14432542	2R_14432542_SNP [dm3] 2R_18545037_SNP [dm6]	A	G	4.700e^-4	0.943	NON_SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2683135	3L_2683135_SNP [dm3] 3L_2683135_SNP [dm6]	T	C	4.705e^-4	0.943	INTRON Fife
2L	19925225	2L_19925225_SNP [dm3] 2L_19925225_SNP [dm6]	A	C	4.711e^-4	0.943	INTRON sick
2R	12364369	2R_12364369_SNP [dm3] 2R_16476864_SNP [dm6]	T	G	4.712e^-4	0.943	INTERGENIC
X	17121567	X_17121567_SNP [dm3] X_17227534_SNP [dm6]	T	C	4.718e^-4	0.943	UPSTREAM CG10598 INTERGENIC
3R	6721502	3R_6721502_SNP [dm3] 3R_10895780_SNP [dm6]	A	T	4.722e^-4	0.943	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	23942634	3L_23942634_SNP [dm3] 3L_23949534_SNP [dm6]	T	A	4.722e^-4	0.943	INTRON CG40470
3R	5685238	3R_5685238_SNP [dm3] 3R_9859516_SNP [dm6]	C	A	4.727e^-4	0.943	INTRON Teh1
2L	4040795	2L_4040795_DEL [dm3] 2L_4040795_DEL [dm6]	GT	G	4.727e^-4	0.943	INTRON ed
2L	11534834	2L_11534834_SNP [dm3] 2L_11534834_SNP [dm6]	A	G	4.728e^-4	0.943	UPSTREAM CR42743 INTERGENIC
2L	4248465	2L_4248465_SNP [dm3] 2L_4248465_SNP [dm6]	G	A	4.728e^-4	0.943	INTRON CR44059
2R	7580722	2R_7580722_SNP [dm3] 2R_11693217_SNP [dm6]	C	A	4.731e^-4	0.943	INTRON CG13197
2L	12640330	2L_12640330_SNP [dm3] 2L_12640330_SNP [dm6]	C	A	4.741e^-4	0.943	INTRON Ref2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5068239	2L_5068239_SNP [dm3] 2L_5068239_SNP [dm6]	C	T	4.742e^-4	0.943	UPSTREAM mir-2495 INTRON qtc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16094216	2R_16094216_SNP [dm3] 2R_20206711_SNP [dm6]	T	A	4.747e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22922240	3L_22922240_SNP [dm3] 3L_22929140_SNP [dm6]	A	C	4.749e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve
2L	20036388	2L_20036388_SNP [dm3] 2L_20036388_SNP [dm6]	T	A	4.755e^-4	0.943	INTRON sNPF
X	14712188	X_14712188_SNP [dm3] X_14818155_SNP [dm6]	A	C	4.755e^-4	0.943	INTRON rut	TF binding site BDTNP1_TFBS_twi
3L	11890500	3L_11890500_SNP [dm3] 3L_11897400_SNP [dm6]	A	C	4.763e^-4	0.943	INTRON CG44837
2R	19226488	2R_19226488_SNP [dm3] 2R_23338965_SNP [dm6]	T	A	4.765e^-4	0.943	INTERGENIC
2L	562744	2L_562744_SNP [dm3] 2L_562744_SNP [dm6]	A	C	4.769e^-4	0.943	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	13171421	2L_13171421_SNP [dm3] 2L_13171421_SNP [dm6]	G	A	4.781e^-4	0.943	SYNONYMOUS_CODING Sfmbt
3R	9730063	3R_9730063_SNP [dm3] 3R_13904341_SNP [dm6]	C	A	4.784e^-4	0.943	UTR_3_PRIME ems
2R	20695547	2R_20695547_SNP [dm3] 2R_24808024_SNP [dm6]	A	T	4.785e^-4	0.943	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
X	20954887	X_20954887_SNP [dm3] X_21083860_SNP [dm6]	T	C	4.787e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4481195	X_4481195_SNP [dm3] X_4587162_SNP [dm6]	C	T	4.789e^-4	0.943	INTRON CR32773
3R	16105982	3R_16105982_SNP [dm3] 3R_20280260_SNP [dm6]	A	C	4.800e^-4	0.943	INTRON cic	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	2220017	3L_2220017_SNP [dm3] 3L_2220017_SNP [dm6]	C	G	4.809e^-4	0.943	INTERGENIC
3L	10748700	3L_10748700_SNP [dm3] 3L_10755600_SNP [dm6]	T	A	4.828e^-4	0.943	INTERGENIC
3L	23608180	3L_23608180_SNP [dm3] 3L_23615080_SNP [dm6]	C	A	4.837e^-4	0.943	INTRON AGO3
2L	3960884	2L_3960884_SNP [dm3] 2L_3960884_SNP [dm6]	C	A	4.837e^-4	0.943	INTRON fred
3L	19700587	3L_19700587_SNP [dm3] 3L_19707487_SNP [dm6]	C	T	4.839e^-4	0.943	UTR_5_PRIME serp	TF binding site mE1_TFBS_cad
3R	10298163	3R_10298163_SNP [dm3] 3R_14472441_SNP [dm6]	T	G	4.839e^-4	0.943	INTRON cv-c
2L	7163662	2L_7163662_DEL [dm3] 2L_7163662_DEL [dm6]	TAAAGCATACACATTTTT...	T	4.845e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17085778	X_17085778_SNP [dm3] X_17191745_SNP [dm6]	T	C	4.852e^-4	0.943	INTRON baz	TF binding site mE1_TFBS_chinmo
2R	12364837	2R_12364837_SNP [dm3] 2R_16477332_SNP [dm6]	C	A	4.855e^-4	0.943	INTERGENIC
2R	11935563	2R_11935563_SNP [dm3] 2R_16048058_SNP [dm6]	G	A	4.860e^-4	0.943	SYNONYMOUS_CODING CG8405 DOWNSTREAM SP2353	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17825974	2L_17825974_DEL [dm3] 2L_17825974_DEL [dm6]	AG	A	4.861e^-4	0.943	INTRON CadN2
3R	26679750	3R_26679750_SNP [dm3] 3R_30854028_SNP [dm6]	A	C	4.864e^-4	0.943	UTR_3_PRIME tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	2577016	X_2577016_SNP [dm3] X_2682983_SNP [dm6]	A	C	4.875e^-4	0.943	UPSTREAM CG2652 EXON CR44470	TF binding site mE1_TFBS_chinmo
2R	88535	2R_88535_SNP [dm3] 2R_4201030_SNP [dm6]	G	A	4.876e^-4	0.943	INTERGENIC
3R	25089865	3R_25089865_SNP [dm3] 3R_29264143_SNP [dm6]	C	G	4.880e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2827363	2L_2827363_SNP [dm3] 2L_2827363_SNP [dm6]	T	G	4.883e^-4	0.943	INTRON Duox
2R	9133533	2R_9133533_SNP [dm3] 2R_13246028_SNP [dm6]	C	T	4.889e^-4	0.943	UPSTREAM CR45278 & 1 other INTERGENIC
X	12512871	X_12512871_SNP [dm3] X_12618838_SNP [dm6]	G	T	4.889e^-4	0.943	INTRON CG11085	TF binding site mE1_TFBS_inv
3R	24367383	3R_24367383_SNP [dm3] 3R_28541661_SNP [dm6]	G	T	4.896e^-4	0.943	DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
2R	5297589	2R_5297589_SNP [dm3] 2R_9410084_SNP [dm6]	C	T	4.898e^-4	0.943	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9164908	2R_9164908_SNP [dm3] 2R_13277403_SNP [dm6]	G	A	4.898e^-4	0.943	INTRON Dh31-R
3R	24365077	3R_24365077_INS [dm3] 3R_28539355_INS [dm6]	C	CC	4.905e^-4	0.943	INTRON Ppn
3L	17354945	3L_17354945_SNP [dm3] 3L_17361845_SNP [dm6]	G	A	4.909e^-4	0.943	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	22922170	3L_22922170_SNP [dm3] 3L_22929070_SNP [dm6]	G	T	4.913e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6664393	3R_6664393_SNP [dm3] 3R_10838671_SNP [dm6]	C	T	4.929e^-4	0.943	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8905085	2L_8905085_SNP [dm3] 2L_8905085_SNP [dm6]	C	T	4.932e^-4	0.943	INTRON CG34398
2R	13527374	2R_13527374_SNP [dm3] 2R_17639869_SNP [dm6]	G	A	4.939e^-4	0.943	UPSTREAM CG10936 INTERGENIC
2L	13079423	2L_13079423_SNP [dm3] 2L_13079423_SNP [dm6]	T	C	4.941e^-4	0.943	INTERGENIC
3R	26219628	3R_26219628_SNP [dm3] 3R_30393906_SNP [dm6]	A	T	4.945e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6697541	2L_6697541_DEL [dm3] 2L_6697541_DEL [dm6]	CA	C	4.947e^-4	0.943	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9843047	3L_9843047_SNP [dm3] 3L_9849947_SNP [dm6]	A	C	4.955e^-4	0.943	INTRON RasGAP1
2L	13109792	2L_13109792_SNP [dm3] 2L_13109792_SNP [dm6]	G	A	4.965e^-4	0.943	DOWNSTREAM CG5142 INTERGENIC
2L	3244783	2L_3244783_SNP [dm3] 2L_3244783_SNP [dm6]	C	T	4.981e^-4	0.943	INTERGENIC
X	655604	X_655604_INS [dm3] X_761571_INS [dm6]	A	ATC	4.982e^-4	0.943	UTR_3_PRIME CG5273 UPSTREAM CR44965 DOWNSTREAM RpL22	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9618667	3L_9618667_SNP [dm3] 3L_9625567_SNP [dm6]	T	A	4.986e^-4	0.943	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18001694	3R_18001694_SNP [dm3] 3R_22175972_SNP [dm6]	G	T	4.998e^-4	0.943	INTRON SKIP
2R	19312559	2R_19312559_SNP [dm3] 2R_23425036_SNP [dm6]	C	A	5.003e^-4	0.943	INTRON CG9815
2L	17860668	2L_17860668_SNP [dm3] 2L_17860668_SNP [dm6]	A	G	5.009e^-4	0.943	INTRON CadN2
X	8149538	X_8149538_SNP [dm3] X_8255505_SNP [dm6]	G	A	5.016e^-4	0.943	INTRON CG1632
2L	8011014	2L_8011014_SNP [dm3] 2L_8011014_SNP [dm6]	T	C	5.019e^-4	0.943	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	19717820	2L_19717820_SNP [dm3] 2L_19717820_SNP [dm6]	G	A	5.021e^-4	0.943	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8740404	3L_8740404_SNP [dm3] 3L_8747304_SNP [dm6]	A	G	5.026e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs
2L	8984453	2L_8984453_SNP [dm3] 2L_8984453_SNP [dm6]	A	G	5.028e^-4	0.943	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13530592	2R_13530592_SNP [dm3] 2R_17643087_SNP [dm6]	A	C	5.032e^-4	0.943	INTERGENIC
2R	18556468	2R_18556468_SNP [dm3] 2R_22668963_SNP [dm6]	A	G	5.035e^-4	0.943	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2583132	3L_2583132_SNP [dm3] 3L_2583132_SNP [dm6]	A	C	5.036e^-4	0.943	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18278441	2R_18278441_SNP [dm3] 2R_22390936_SNP [dm6]	G	A	5.064e^-4	0.943	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11080675	2R_11080675_SNP [dm3] 2R_15193170_SNP [dm6]	T	C	5.067e^-4	0.943	NON_SYNONYMOUS_CODING Sfp51E DOWNSTREAM CG43829
2L	17512056	2L_17512056_SNP [dm3] 2L_17512056_SNP [dm6]	T	C	5.067e^-4	0.943	SYNONYMOUS_CODING Dhc36C
3R	24355143	3R_24355143_SNP [dm3] 3R_28529421_SNP [dm6]	G	A	5.072e^-4	0.943	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5456272	X_5456272_SNP [dm3] X_5562239_SNP [dm6]	T	G	5.074e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16181650	X_16181650_SNP [dm3] X_16287617_SNP [dm6]	A	C	5.077e^-4	0.943	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
3R	13921348	3R_13921348_SNP [dm3] 3R_18095626_SNP [dm6]	G	A	5.079e^-4	0.943	INTRON sr
2L	4571930	2L_4571930_SNP [dm3] 2L_4571930_SNP [dm6]	A	G	5.082e^-4	0.943	INTRON dp
2L	3941300	2L_3941300_SNP [dm3] 2L_3941300_SNP [dm6]	T	G	5.084e^-4	0.943	INTRON fred

By genomic position
Variant impact
Gene name

Paraquat_Resistance phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results