DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.997e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1709 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10595382	3L_10595382_SNP [dm3] 3L_10602282_SNP [dm6]	T	G	1.606e^-6	0.949	INTERGENIC
X	18815421	X_18815421_DEL [dm3] X_18921388_DEL [dm6]	GG	G	1.880e^-6	0.949	INTERGENIC
3L	8278603	3L_8278603_SNP [dm3] 3L_8285503_SNP [dm6]	G	T	2.292e^-6	0.949	INTRON cert	TF binding site mE1_TFBS_Trl
3L	18915215	3L_18915215_SNP [dm3] 3L_18922115_SNP [dm6]	C	T	2.443e^-6	0.949	UPSTREAM CG3819 DOWNSTREAM CG32204 INTERGENIC
3L	8278427	3L_8278427_SNP [dm3] 3L_8285327_SNP [dm6]	G	A	2.859e^-6	0.949	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7645052	3L_7645052_SNP [dm3] 3L_7651952_SNP [dm6]	T	C	3.110e^-6	0.949	UTR_3_PRIME CG7492 DOWNSTREAM PGRP-SD INTRON CG32373
X	18815435	X_18815435_SNP [dm3] X_18921402_SNP [dm6]	T	C	4.084e^-6	0.949	INTERGENIC
3L	8278488	3L_8278488_SNP [dm3] 3L_8285388_SNP [dm6]	G	A	4.337e^-6	0.949	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15879813	2R_15879813_DEL [dm3] 2R_19992308_DEL [dm6]	TACCGCTT	T	4.754e^-6	0.949	INTERGENIC
2L	12173435	2L_12173435_SNP [dm3] 2L_12173435_SNP [dm6]	C	T	5.362e^-6	0.949	SYNONYMOUS_CODING crok UPSTREAM CG6583 DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
3L	14683494	3L_14683494_SNP [dm3] 3L_14690394_SNP [dm6]	A	G	8.561e^-6	0.949	UPSTREAM CG13477 INTRON ome
X	18815433	X_18815433_SNP [dm3] X_18921400_SNP [dm6]	T	C	8.916e^-6	0.949	INTERGENIC
3L	16231211	3L_16231211_SNP [dm3] 3L_16238111_SNP [dm6]	T	C	1.037e^-5	0.949	INTRON l_3_72Dr
3L	8278494	3L_8278494_SNP [dm3] 3L_8285394_SNP [dm6]	G	T	1.050e^-5	0.949	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9726416	3L_9726416_SNP [dm3] 3L_9733316_SNP [dm6]	C	T	1.164e^-5	0.949	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
X	17174558	X_17174558_SNP [dm3] X_17280525_SNP [dm6]	A	C	1.313e^-5	0.949	UTR_3_PRIME f DOWNSTREAM CG8664
X	10450150	X_10450150_INS [dm3] X_10556117_INS [dm6]	G	GCGTGTG	1.321e^-5	0.949	UTR_5_PRIME spri UPSTREAM spri INTRON spri
2L	3924734	2L_3924734_SNP [dm3] 2L_3924734_SNP [dm6]	G	A	1.336e^-5	0.949	INTRON fred
3R	16910244	3R_16910244_SNP [dm3] 3R_21084522_SNP [dm6]	G	C	1.651e^-5	0.949	INTRON RhoGAP93B
3R	16910237	3R_16910237_SNP [dm3] 3R_21084515_SNP [dm6]	A	C	1.697e^-5	0.949	INTRON RhoGAP93B
2L	5333111	2L_5333111_SNP [dm3] 2L_5333111_SNP [dm6]	C	T	1.724e^-5	0.949	INTRON fusl	TF binding site mE1_TFBS_cad
3L	8278522	3L_8278522_SNP [dm3] 3L_8285422_SNP [dm6]	T	C	1.812e^-5	0.949	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2401994	3L_2401994_SNP [dm3] 3L_2401994_SNP [dm6]	A	T	1.815e^-5	0.949	INTRON CG45186
3R	9886698	3R_9886698_SNP [dm3] 3R_14060976_SNP [dm6]	A	C	1.842e^-5	0.949	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	16161908	X_16161908_SNP [dm3] X_16267875_SNP [dm6]	T	C	1.853e^-5	0.949	INTRON kat80
2R	11544409	2R_11544409_SNP [dm3] 2R_15656904_SNP [dm6]	C	T	1.885e^-5	0.949	UTR_3_PRIME CG42524 UPSTREAM mir-278 DOWNSTREAM fus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5146776	3L_5146776_SNP [dm3] 3L_5153676_SNP [dm6]	G	A	1.953e^-5	0.949	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	16910231	3R_16910231_SNP [dm3] 3R_21084509_SNP [dm6]	G	A	1.968e^-5	0.949	INTRON RhoGAP93B
3L	18923954	3L_18923954_SNP [dm3] 3L_18930854_SNP [dm6]	G	T	2.076e^-5	0.949	INTRON CG32204
3L	10158934	3L_10158934_SNP [dm3] 3L_10165834_SNP [dm6]	T	A	2.083e^-5	0.949	UTR_3_PRIME CG6628 INTRON dpr10
3R	6347881	3R_6347881_SNP [dm3] 3R_10522159_SNP [dm6]	T	C	2.116e^-5	0.949	INTRON hth
3R	10945480	3R_10945480_SNP [dm3] 3R_15119758_SNP [dm6]	C	T	2.199e^-5	0.949	INTRON CG42788
3L	16232077	3L_16232077_SNP [dm3] 3L_16238977_SNP [dm6]	T	C	2.222e^-5	0.949	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16232155	3L_16232155_SNP [dm3] 3L_16239055_SNP [dm6]	G	A	2.222e^-5	0.949	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5317146	3L_5317146_SNP [dm3] 3L_5324046_SNP [dm6]	C	G	2.231e^-5	0.949	INTERGENIC
3L	1559050	3L_1559050_SNP [dm3] 3L_1559050_SNP [dm6]	G	A	2.232e^-5	0.949	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14954607	2L_14954607_SNP [dm3] 2L_14954607_SNP [dm6]	G	C	2.244e^-5	0.949	INTRON CG42313
3L	5146815	3L_5146815_SNP [dm3] 3L_5153715_SNP [dm6]	C	T	2.261e^-5	0.949	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8278459	3L_8278459_SNP [dm3] 3L_8285359_SNP [dm6]	G	C	2.287e^-5	0.949	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13756187	3R_13756187_SNP [dm3] 3R_17930465_SNP [dm6]	T	C	2.393e^-5	0.949	INTRON cpo
X	17174280	X_17174280_SNP [dm3] X_17280247_SNP [dm6]	T	C	2.409e^-5	0.949	SYNONYMOUS_CODING f DOWNSTREAM CG8664
3L	16231750	3L_16231750_SNP [dm3] 3L_16238650_SNP [dm6]	T	G	2.566e^-5	0.949	NON_SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad
X	17141922	X_17141922_SNP [dm3] X_17247889_SNP [dm6]	A	G	2.639e^-5	0.949	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
3L	21759678	3L_21759678_SNP [dm3] 3L_21766578_SNP [dm6]	G	C	2.666e^-5	0.949	UPSTREAM CG42689 INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9878103	3R_9878103_SNP [dm3] 3R_14052381_SNP [dm6]	A	T	2.682e^-5	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9728435	3L_9728435_SNP [dm3] 3L_9735335_SNP [dm6]	A	G	2.724e^-5	0.949	INTRON CG42268
3L	1554221	3L_1554221_SNP [dm3] 3L_1554221_SNP [dm6]	A	T	2.854e^-5	0.949	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
3L	1559164	3L_1559164_SNP [dm3] 3L_1559164_SNP [dm6]	A	G	2.854e^-5	0.949	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1559227	3L_1559227_SNP [dm3] 3L_1559227_SNP [dm6]	T	G	2.854e^-5	0.949	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1559230	3L_1559230_SNP [dm3] 3L_1559230_SNP [dm6]	C	T	2.854e^-5	0.949	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10590350	2R_10590350_SNP [dm3] 2R_14702845_SNP [dm6]	A	C	2.920e^-5	0.949	INTRON mspo
3R	16909592	3R_16909592_SNP [dm3] 3R_21083870_SNP [dm6]	T	C	2.922e^-5	0.949	SYNONYMOUS_CODING RhoGAP93B
X	5961579	X_5961579_SNP [dm3] X_6067546_SNP [dm6]	A	C	2.966e^-5	0.949	UPSTREAM CG5928 INTERGENIC
X	16161903	X_16161903_SNP [dm3] X_16267870_SNP [dm6]	T	A	3.057e^-5	0.949	INTRON kat80
3L	16230738	3L_16230738_SNP [dm3] 3L_16237638_SNP [dm6]	T	G	3.078e^-5	0.949	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
2R	18555282	2R_18555282_DEL [dm3] 2R_22667777_DEL [dm6]	AA	A	3.210e^-5	0.949	UTR_3_PRIME CG30273 UPSTREAM CG30269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18924185	3L_18924185_SNP [dm3] 3L_18931085_SNP [dm6]	A	T	3.258e^-5	0.949	INTRON CG32204
3L	2401997	3L_2401997_SNP [dm3] 3L_2401997_SNP [dm6]	A	G	3.272e^-5	0.949	INTRON CG45186
X	5857906	X_5857906_SNP [dm3] X_5963873_SNP [dm6]	C	T	3.296e^-5	0.949	SYNONYMOUS_CODING fs_1_M3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	3.310e^-5	0.949	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7020417	3R_7020417_SNP [dm3] 3R_11194695_SNP [dm6]	A	G	3.403e^-5	0.949	INTERGENIC
2R	1838606	2R_1838606_SNP [dm3] 2R_5951101_SNP [dm6]	A	C	3.432e^-5	0.949	INTERGENIC	transposable element FlyBase
2R	20411830	2R_20411830_SNP [dm3] 2R_24524307_SNP [dm6]	C	G	3.495e^-5	0.949	UTR_3_PRIME CG4612	TF binding site mE1_TFBS_chinmo
2R	10510496	2R_10510496_SNP [dm3] 2R_14622991_SNP [dm6]	G	A	3.509e^-5	0.949	UPSTREAM snoRNA:Me18S-A1061 & 3 others DOWNSTREAM snoRNA:Me28S-C3227a & 3 others EXON Uhg5	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7258308	3L_7258308_SNP [dm3] 3L_7265208_SNP [dm6]	T	A	3.565e^-5	0.949	DOWNSTREAM unc-13-4A INTERGENIC
3L	16230454	3L_16230454_SNP [dm3] 3L_16237354_SNP [dm6]	T	G	3.595e^-5	0.949	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
X	16540099	X_16540099_INS [dm3] X_16646066_INS [dm6]	T	TT	3.610e^-5	0.949	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18921036	3L_18921036_SNP [dm3] 3L_18927936_SNP [dm6]	C	G	3.636e^-5	0.949	INTRON CG32204
2L	9066898	2L_9066898_SNP [dm3] 2L_9066898_SNP [dm6]	T	G	3.648e^-5	0.949	INTRON CG31708
X	18419868	X_18419868_SNP [dm3] X_18525835_SNP [dm6]	A	G	3.660e^-5	0.949	INTRON Bx
3L	1559206	3L_1559206_SNP [dm3] 3L_1559206_SNP [dm6]	C	T	3.674e^-5	0.949	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21759578	3L_21759578_SNP [dm3] 3L_21766478_SNP [dm6]	C	A	3.690e^-5	0.949	UPSTREAM CG42689 INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18923935	3L_18923935_SNP [dm3] 3L_18930835_SNP [dm6]	G	C	3.734e^-5	0.949	INTRON CG32204
3L	7257649	3L_7257649_SNP [dm3] 3L_7264549_SNP [dm6]	T	C	3.803e^-5	0.949	UPSTREAM CG14830 INTERGENIC
X	5961557	X_5961557_SNP [dm3] X_6067524_SNP [dm6]	A	T	3.829e^-5	0.949	UPSTREAM CG5928 INTERGENIC
2L	8984435	2L_8984435_SNP [dm3] 2L_8984435_SNP [dm6]	T	A	3.894e^-5	0.952	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14954631	2L_14954631_SNP [dm3] 2L_14954631_SNP [dm6]	G	C	4.010e^-5	0.953	INTRON CG42313
X	3936692	X_3936692_SNP [dm3] X_4042659_SNP [dm6]	T	G	4.060e^-5	0.953	INTERGENIC
2L	9883993	2L_9883993_SNP [dm3] 2L_9883993_SNP [dm6]	T	G	4.123e^-5	0.953	INTRON nAChRalpha6
X	18419869	X_18419869_SNP [dm3] X_18525836_SNP [dm6]	A	C	4.141e^-5	0.953	INTRON Bx
X	17142187	X_17142187_INS [dm3] X_17248154_INS [dm6]	A	ACAA	4.155e^-5	0.953	DOWNSTREAM CG8675 INTRON f
X	17163497	X_17163497_SNP [dm3] X_17269464_SNP [dm6]	G	A	4.248e^-5	0.961	INTRON f
3L	8566318	3L_8566318_SNP [dm3] 3L_8573218_SNP [dm6]	C	A	4.292e^-5	0.961	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	67188	2L_67188_SNP [dm3] 2L_67188_SNP [dm6]	T	C	4.387e^-5	0.97	UTR_5_PRIME dbr DOWNSTREAM CR45339 & 1 other INTRON dbr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13114381	2L_13114381_INS [dm3] 2L_13114381_INS [dm6]	T	TT	4.615e^-5	0.999	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16533880	3L_16533880_SNP [dm3] 3L_16540780_SNP [dm6]	G	A	4.653e^-5	0.999	INTRON CG43373
2R	4926653	2R_4926653_SNP [dm3] 2R_9039148_SNP [dm6]	A	T	4.686e^-5	0.999	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16533046	3L_16533046_INS [dm3] 3L_16539946_INS [dm6]	T	TTC	4.798e^-5	0.999	INTRON CG43373
2R	16664217	2R_16664217_SNP [dm3] 2R_20776712_SNP [dm6]	T	C	4.853e^-5	0.999	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
2R	17310763	2R_17310763_SNP [dm3] 2R_21423258_SNP [dm6]	T	C	4.865e^-5	0.999	INTRON Sdc
X	17141952	X_17141952_INS [dm3] X_17247919_INS [dm6]	T	TAATT	4.940e^-5	0.999	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
2L	5675810	2L_5675810_SNP [dm3] 2L_5675810_SNP [dm6]	C	G	4.945e^-5	0.999	INTERGENIC
3R	16910196	3R_16910196_SNP [dm3] 3R_21084474_SNP [dm6]	T	C	5.170e^-5	0.999	SPLICE_SITE_REGION RhoGAP93B SYNONYMOUS_CODING RhoGAP93B
3L	9726443	3L_9726443_SNP [dm3] 3L_9733343_SNP [dm6]	G	A	5.284e^-5	0.999	SPLICE_SITE_REGION CG6749 SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
3L	13159836	3L_13159836_SNP [dm3] 3L_13166736_SNP [dm6]	C	T	5.314e^-5	0.999	INTERGENIC
3L	16977547	3L_16977547_SNP [dm3] 3L_16984447_SNP [dm6]	G	T	5.467e^-5	0.999	INTRON Exn
3R	12684998	3R_12684998_SNP [dm3] 3R_16859276_SNP [dm6]	G	A	5.477e^-5	0.999	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17142169	X_17142169_SNP [dm3] X_17248136_SNP [dm6]	T	G	5.839e^-5	0.999	DOWNSTREAM CG8675 INTRON f
3L	16278883	3L_16278883_DEL [dm3] 3L_16285783_DEL [dm6]	ATA	A	5.930e^-5	0.999	UPSTREAM CG13047 INTERGENIC
3L	16279016	3L_16279016_SNP [dm3] 3L_16285916_SNP [dm6]	A	G	5.930e^-5	0.999	UPSTREAM CG13047 INTERGENIC
X	3593479	X_3593479_SNP [dm3] X_3699446_SNP [dm6]	G	A	5.939e^-5	0.999	SYNONYMOUS_CODING Mnt
2L	11550206	2L_11550206_SNP [dm3] 2L_11550206_SNP [dm6]	A	T	5.985e^-5	0.999	UPSTREAM CR44494 INTERGENIC
3R	6576583	3R_6576583_SNP [dm3] 3R_10750861_SNP [dm6]	A	C	6.002e^-5	0.999	UTR_5_PRIME TkR86C UPSTREAM TkR86C
X	5961616	X_5961616_SNP [dm3] X_6067583_SNP [dm6]	A	G	6.180e^-5	0.999	UPSTREAM CG5928 INTERGENIC
3L	18923958	3L_18923958_DEL [dm3] 3L_18930858_DEL [dm6]	CG	C	6.182e^-5	0.999	INTRON CG32204
3L	2702473	3L_2702473_SNP [dm3] 3L_2702473_SNP [dm6]	G	C	6.234e^-5	0.999	INTRON Fife
2L	9843221	2L_9843221_SNP [dm3] 2L_9843221_SNP [dm6]	C	T	6.350e^-5	0.999	INTRON nAChRalpha6
3L	18932115	3L_18932115_INS [dm3] 3L_18939015_INS [dm6]	T	TATTCAT	6.353e^-5	0.999	INTRON CG32204
3R	1271213	3R_1271213_SNP [dm3] 3R_5445491_SNP [dm6]	T	A	6.723e^-5	0.999	INTRON CG14669
3R	7072330	3R_7072330_SNP [dm3] 3R_11246608_SNP [dm6]	G	C	6.770e^-5	0.999	UTR_3_PRIME CG5214	TF binding site mE1_TFBS_cad
2L	10919416	2L_10919416_SNP [dm3] 2L_10919416_SNP [dm6]	A	G	6.878e^-5	0.999	INTRON dpr2
3L	5804561	3L_5804561_SNP [dm3] 3L_5811461_SNP [dm6]	A	G	6.897e^-5	0.999	SYNONYMOUS_CODING CG5537 UPSTREAM S6k DOWNSTREAM mad2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	9979738	3L_9979738_SNP [dm3] 3L_9986638_SNP [dm6]	T	G	6.976e^-5	0.999	INTRON dpr6
3L	16421446	3L_16421446_SNP [dm3] 3L_16428346_SNP [dm6]	G	A	6.986e^-5	0.999	INTRON CG33158 & 1 other
3R	16909523	3R_16909523_SNP [dm3] 3R_21083801_SNP [dm6]	G	A	7.097e^-5	0.999	UTR_3_PRIME RhoGAP93B
2L	900123	2L_900123_SNP [dm3] 2L_900123_SNP [dm6]	A	T	7.154e^-5	0.999	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10965779	3R_10965779_SNP [dm3] 3R_15140057_SNP [dm6]	C	T	7.167e^-5	0.999	NON_SYNONYMOUS_CODING CG3987 EXON CR45600
2L	8783443	2L_8783443_SNP [dm3] 2L_8783443_SNP [dm6]	G	T	7.322e^-5	0.999	UPSTREAM CG42710 INTERGENIC
3L	16237773	3L_16237773_SNP [dm3] 3L_16244673_SNP [dm6]	C	T	7.592e^-5	0.999	INTERGENIC
3L	9979740	3L_9979740_SNP [dm3] 3L_9986640_SNP [dm6]	T	G	7.705e^-5	0.999	INTRON dpr6
3L	9979741	3L_9979741_SNP [dm3] 3L_9986641_SNP [dm6]	C	G	7.705e^-5	0.999	INTRON dpr6
3L	9979742	3L_9979742_INS [dm3] 3L_9986642_INS [dm6]	T	TGGGTG	7.705e^-5	0.999	INTRON dpr6
3L	9979747	3L_9979747_DEL [dm3] 3L_9986647_DEL [dm6]	CTCTT	C	7.705e^-5	0.999	INTRON dpr6
2L	9598893	2L_9598893_SNP [dm3] 2L_9598893_SNP [dm6]	C	T	7.731e^-5	0.999	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14527981	X_14527981_SNP [dm3] X_14633948_SNP [dm6]	A	G	7.736e^-5	0.999	INTRON NetA	TF binding site mE1_TFBS_HSA
3L	16235182	3L_16235182_SNP [dm3] 3L_16242082_SNP [dm6]	C	G	7.794e^-5	0.999	INTERGENIC
3L	16237792	3L_16237792_SNP [dm3] 3L_16244692_SNP [dm6]	G	A	7.794e^-5	0.999	INTERGENIC
3L	16237843	3L_16237843_SNP [dm3] 3L_16244743_SNP [dm6]	A	T	7.794e^-5	0.999	INTERGENIC
3L	18923941	3L_18923941_DEL [dm3] 3L_18930841_DEL [dm6]	TT	T	7.804e^-5	0.999	INTRON CG32204
3R	16995022	3R_16995022_SNP [dm3] 3R_21169300_SNP [dm6]	T	A	7.805e^-5	0.999	INTRON SNF4Agamma
2L	1188731	2L_1188731_SNP [dm3] 2L_1188731_SNP [dm6]	G	A	7.898e^-5	0.999	INTRON CG5001
2R	17083552	2R_17083552_DEL [dm3] 2R_21196047_DEL [dm6]	AA	A	8.158e^-5	0.999	INTRON Lapsyn
3L	12646073	3L_12646073_SNP [dm3] 3L_12652973_SNP [dm6]	T	A	8.166e^-5	0.999	EXON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17141921	X_17141921_SNP [dm3] X_17247888_SNP [dm6]	A	G	8.272e^-5	0.999	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
2L	10436109	2L_10436109_SNP [dm3] 2L_10436109_SNP [dm6]	A	G	8.391e^-5	0.999	SYNONYMOUS_CODING holn1 UPSTREAM CG5337
3L	10045734	3L_10045734_SNP [dm3] 3L_10052634_SNP [dm6]	A	G	8.392e^-5	0.999	INTRON dpr6
X	6854878	X_6854878_SNP [dm3] X_6960845_SNP [dm6]	T	A	8.522e^-5	0.999	INTRON CG14431 & 1 other
3L	10110261	3L_10110261_SNP [dm3] 3L_10117161_SNP [dm6]	G	C	8.686e^-5	0.999	INTRON dpr6
X	18422813	X_18422813_SNP [dm3] X_18528780_SNP [dm6]	T	C	8.740e^-5	0.999	SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	9040075	2L_9040075_SNP [dm3] 2L_9040075_SNP [dm6]	G	A	8.809e^-5	0.999	INTERGENIC
3L	9979584	3L_9979584_SNP [dm3] 3L_9986484_SNP [dm6]	A	T	8.867e^-5	0.999	INTRON dpr6
2R	8279708	2R_8279708_SNP [dm3] 2R_12392203_SNP [dm6]	T	C	8.891e^-5	0.999	UPSTREAM Cpr49Ad INTERGENIC
3L	16237779	3L_16237779_SNP [dm3] 3L_16244679_SNP [dm6]	A	T	8.916e^-5	0.999	INTERGENIC
3L	16237798	3L_16237798_SNP [dm3] 3L_16244698_SNP [dm6]	T	G	8.916e^-5	0.999	INTERGENIC
3L	318460	3L_318460_SNP [dm3] 3L_318460_SNP [dm6]	A	T	8.944e^-5	0.999	DOWNSTREAM CG34264 INTRON fwd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	84418	2L_84418_SNP [dm3] 2L_84418_SNP [dm6]	A	G	8.971e^-5	0.999	INTRON net
2L	9067600	2L_9067600_SNP [dm3] 2L_9067600_SNP [dm6]	C	G	9.000e^-5	0.999	INTRON CG31708
3L	10048717	3L_10048717_SNP [dm3] 3L_10055617_SNP [dm6]	T	A	9.001e^-5	0.999	INTRON dpr6
3L	13643740	3L_13643740_SNP [dm3] 3L_13650640_SNP [dm6]	T	C	9.072e^-5	0.999	INTRON bru-3
3R	16995031	3R_16995031_SNP [dm3] 3R_21169309_SNP [dm6]	A	C	9.466e^-5	0.999	INTRON SNF4Agamma
3R	20640828	3R_20640828_SNP [dm3] 3R_24815106_SNP [dm6]	A	T	9.487e^-5	0.999	NON_SYNONYMOUS_CODING CG5808 DOWNSTREAM CG34150	TF binding site mE1_TFBS_cad
2R	9976530	2R_9976530_SNP [dm3] 2R_14089025_SNP [dm6]	A	G	9.549e^-5	0.999	INTRON Prosap
3L	5804660	3L_5804660_SNP [dm3] 3L_5811560_SNP [dm6]	G	A	9.649e^-5	0.999	SYNONYMOUS_CODING CG5537 UPSTREAM S6k DOWNSTREAM mad2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	20641003	3R_20641003_SNP [dm3] 3R_24815281_SNP [dm6]	A	G	9.659e^-5	0.999	DOWNSTREAM CG34150 INTRON CG5808	TF binding site mE1_TFBS_cad
3L	18936350	3L_18936350_SNP [dm3] 3L_18943250_SNP [dm6]	C	T	9.821e^-5	0.999	INTRON CG32204
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	9.868e^-5	0.999	INTRON bnl
X	14528646	X_14528646_SNP [dm3] X_14634613_SNP [dm6]	A	G	9.873e^-5	0.999	INTRON NetA
X	17167193	X_17167193_SNP [dm3] X_17273160_SNP [dm6]	C	T	1.004e^-4	0.999	NON_SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad
2R	15241356	2R_15241356_SNP [dm3] 2R_19353851_SNP [dm6]	C	A	1.008e^-4	0.999	INTRON Rgk1
2L	5675677	2L_5675677_SNP [dm3] 2L_5675677_SNP [dm6]	C	A	1.010e^-4	0.999	INTERGENIC
3L	10048374	3L_10048374_SNP [dm3] 3L_10055274_SNP [dm6]	C	T	1.013e^-4	0.999	INTRON dpr6
3L	16237776	3L_16237776_SNP [dm3] 3L_16244676_SNP [dm6]	C	T	1.018e^-4	0.999	INTERGENIC
2R	17310754	2R_17310754_SNP [dm3] 2R_21423249_SNP [dm6]	A	C	1.022e^-4	0.999	INTRON Sdc
3L	11437558	3L_11437558_SNP [dm3] 3L_11444458_SNP [dm6]	G	A	1.025e^-4	0.999	UPSTREAM CG7557 DOWNSTREAM CR44549 INTERGENIC
2L	5872606	2L_5872606_SNP [dm3] 2L_5872606_SNP [dm6]	T	A	1.030e^-4	0.999	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8984446	2L_8984446_SNP [dm3] 2L_8984446_SNP [dm6]	T	A	1.043e^-4	0.999	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4899209	2L_4899209_SNP [dm3] 2L_4899209_SNP [dm6]	C	T	1.062e^-4	0.999	INTRON CG3036
X	17165398	X_17165398_SNP [dm3] X_17271365_SNP [dm6]	A	G	1.063e^-4	0.999	SYNONYMOUS_CODING f
3L	14691415	3L_14691415_SNP [dm3] 3L_14698315_SNP [dm6]	A	T	1.065e^-4	0.999	NON_SYNONYMOUS_CODING CG17177 INTRON ome
3L	10049729	3L_10049729_DEL [dm3] 3L_10056629_DEL [dm6]	AA	A	1.072e^-4	0.999	INTRON dpr6
3L	7258443	3L_7258443_SNP [dm3] 3L_7265343_SNP [dm6]	C	A	1.090e^-4	0.999	DOWNSTREAM unc-13-4A INTERGENIC
3R	7182542	3R_7182542_SNP [dm3] 3R_11356820_SNP [dm6]	C	T	1.098e^-4	0.999	INTRON pros
3L	12646074	3L_12646074_SNP [dm3] 3L_12652974_SNP [dm6]	C	G	1.109e^-4	0.999	EXON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14617161	2R_14617161_SNP [dm3] 2R_18729656_SNP [dm6]	T	C	1.114e^-4	0.999	INTRON Hs3st-A & 1 other
3R	1596499	3R_1596499_SNP [dm3] 3R_5770777_SNP [dm6]	A	C	1.120e^-4	0.999	INTRON CG2082
2L	9601977	2L_9601977_SNP [dm3] 2L_9601977_SNP [dm6]	T	A	1.123e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12377116	3L_12377116_SNP [dm3] 3L_12384016_SNP [dm6]	C	T	1.123e^-4	0.999	INTRON Ncc69
2R	11639314	2R_11639314_SNP [dm3] 2R_15751809_SNP [dm6]	G	T	1.154e^-4	0.999	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11794447	X_11794447_SNP [dm3] X_11900414_SNP [dm6]	A	G	1.163e^-4	0.999	UTR_3_PRIME Upf1 DOWNSTREAM Upf1 & 1 other
3L	7467990	3L_7467990_INS [dm3] 3L_7474890_INS [dm6]	T	TTT	1.166e^-4	0.999	UPSTREAM CG43292 INTERGENIC
3L	13684598	3L_13684598_DEL [dm3] 3L_13691498_DEL [dm6]	GC	G	1.168e^-4	0.999	INTRON bru-3
X	3593079	X_3593079_DEL [dm3] X_3699046_DEL [dm6]	TTGTCAAA	C	1.188e^-4	0.999	INTRON Mnt
3R	16910640	3R_16910640_INS [dm3] 3R_21084918_INS [dm6]	A	AA	1.193e^-4	0.999	INTRON RhoGAP93B
3R	16910645	3R_16910645_DEL [dm3] 3R_21084923_DEL [dm6]	AAA	A	1.193e^-4	0.999	INTRON RhoGAP93B
3R	16910657	3R_16910657_INS [dm3] 3R_21084935_INS [dm6]	C	CTT	1.193e^-4	0.999	INTRON RhoGAP93B
X	18165249	X_18165249_SNP [dm3] X_18271216_SNP [dm6]	G	A	1.205e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18873321	X_18873321_SNP [dm3] X_18979288_SNP [dm6]	T	C	1.212e^-4	0.999	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9601966	2L_9601966_SNP [dm3] 2L_9601966_SNP [dm6]	T	A	1.225e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9601970	2L_9601970_SNP [dm3] 2L_9601970_SNP [dm6]	A	T	1.225e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	1.227e^-4	0.999	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
X	11904254	X_11904254_SNP [dm3] X_12010221_SNP [dm6]	G	A	1.231e^-4	0.999	NON_SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
X	5857779	X_5857779_SNP [dm3] X_5963746_SNP [dm6]	G	A	1.234e^-4	0.999	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9600764	2L_9600764_SNP [dm3] 2L_9600764_SNP [dm6]	G	T	1.237e^-4	0.999	NON_SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11575429	3L_11575429_SNP [dm3] 3L_11582329_SNP [dm6]	G	T	1.246e^-4	0.999	UPSTREAM CG33269 DOWNSTREAM CG32086 INTERGENIC
2R	16664128	2R_16664128_SNP [dm3] 2R_20776623_SNP [dm6]	T	A	1.251e^-4	0.999	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
3L	16421447	3L_16421447_SNP [dm3] 3L_16428347_SNP [dm6]	G	A	1.256e^-4	0.999	INTRON CG33158 & 1 other
X	14528638	X_14528638_SNP [dm3] X_14634605_SNP [dm6]	T	C	1.260e^-4	0.999	INTRON NetA
2L	9657829	2L_9657829_SNP [dm3] 2L_9657829_SNP [dm6]	C	G	1.263e^-4	0.999	DOWNSTREAM CG33299 INTERGENIC	TF binding site mE1_TFBS_inv
3L	2640317	3L_2640317_SNP [dm3] 3L_2640317_SNP [dm6]	A	T	1.270e^-4	0.999	INTRON MEP-1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25769556	3R_25769556_SNP [dm3] 3R_29943834_SNP [dm6]	A	C	1.271e^-4	0.999	NON_SYNONYMOUS_CODING CG15523
2R	17176261	2R_17176261_SNP [dm3] 2R_21288756_SNP [dm6]	C	T	1.272e^-4	0.999	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	8278624	3L_8278624_SNP [dm3] 3L_8285524_SNP [dm6]	C	T	1.274e^-4	0.999	INTRON cert	TF binding site mE1_TFBS_Trl
3L	16279181	3L_16279181_SNP [dm3] 3L_16286081_SNP [dm6]	A	G	1.281e^-4	0.999	UPSTREAM CG13047 INTERGENIC
2L	5675550	2L_5675550_SNP [dm3] 2L_5675550_SNP [dm6]	C	T	1.285e^-4	0.999	INTERGENIC
2L	3980945	2L_3980945_SNP [dm3] 2L_3980945_SNP [dm6]	G	A	1.286e^-4	0.999	INTRON fred
3L	622180	3L_622180_SNP [dm3] 3L_622180_SNP [dm6]	A	T	1.288e^-4	0.999	UTR_5_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	14515556	2R_14515556_SNP [dm3] 2R_18628051_SNP [dm6]	G	A	1.288e^-4	0.999	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17141991	X_17141991_DEL [dm3] X_17247958_DEL [dm6]	ACCAATGGCATAA...	A	1.294e^-4	0.999	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
2R	16321564	2R_16321564_SNP [dm3] 2R_20434059_SNP [dm6]	G	A	1.294e^-4	0.999	INTRON CG12484
3L	14926532	3L_14926532_DEL [dm3] 3L_14933432_DEL [dm6]	AACGAAA	A	1.302e^-4	0.999	INTRON DCX-EMAP
3R	20264656	3R_20264656_INS [dm3] 3R_24438934_INS [dm6]	G	GAAAGAGTGGGTG...	1.304e^-4	0.999	UPSTREAM CR43455 INTRON nAChRalpha1
3L	16281682	3L_16281682_SNP [dm3] 3L_16288582_SNP [dm6]	C	T	1.306e^-4	0.999	UPSTREAM CG13046 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9728423	3L_9728423_SNP [dm3] 3L_9735323_SNP [dm6]	T	A	1.310e^-4	0.999	INTRON CG42268
X	6273436	X_6273436_SNP [dm3] X_6379403_SNP [dm6]	T	C	1.312e^-4	0.999	INTERGENIC
2R	12301245	2R_12301245_DEL [dm3] 2R_16413740_DEL [dm6]	TTT	T	1.312e^-4	0.999	INTRON Sema-2b
2L	17568900	2L_17568900_SNP [dm3] 2L_17568900_SNP [dm6]	G	C	1.319e^-4	0.999	INTERGENIC
3L	12839768	3L_12839768_SNP [dm3] 3L_12846668_SNP [dm6]	T	A	1.321e^-4	0.999	INTRON CG10948	TF binding site mE1_TFBS_kn
2R	17094584	2R_17094584_SNP [dm3] 2R_21207079_SNP [dm6]	A	G	1.322e^-4	0.999	NON_SYNONYMOUS_CODING Glycogenin INTRON CG44245 & 1 other
3R	14176376	3R_14176376_SNP [dm3] 3R_18350654_SNP [dm6]	G	A	1.324e^-4	0.999	INTRON CG15803
3R	14176379	3R_14176379_DEL [dm3] 3R_18350657_DEL [dm6]	TT	T	1.324e^-4	0.999	INTRON CG15803
X	6346818	X_6346818_SNP [dm3] X_6452785_SNP [dm6]	T	A	1.325e^-4	0.999	INTRON CG42340
X	6346823	X_6346823_SNP [dm3] X_6452790_SNP [dm6]	A	T	1.325e^-4	0.999	INTRON CG42340
3R	2010831	3R_2010831_SNP [dm3] 3R_6185109_SNP [dm6]	G	A	1.325e^-4	0.999	EXON CR31562
3R	2010900	3R_2010900_SNP [dm3] 3R_6185178_SNP [dm6]	A	G	1.325e^-4	0.999	EXON CR31562
2R	15434893	2R_15434893_SNP [dm3] 2R_19547388_SNP [dm6]	C	A	1.327e^-4	0.999	UPSTREAM sm INTRON sm
3L	19449606	3L_19449606_SNP [dm3] 3L_19456506_SNP [dm6]	G	T	1.337e^-4	0.999	DOWNSTREAM CR45434 INTERGENIC
3L	15164955	3L_15164955_SNP [dm3] 3L_15171855_SNP [dm6]	C	A	1.351e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12668459	2L_12668459_SNP [dm3] 2L_12668459_SNP [dm6]	T	G	1.356e^-4	0.999	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2
2L	897788	2L_897788_SNP [dm3] 2L_897788_SNP [dm6]	G	T	1.360e^-4	0.999	UPSTREAM Lsp1beta EXON CR45348	TF binding site mE1_TFBS_chinmo
3L	10048720	3L_10048720_SNP [dm3] 3L_10055620_SNP [dm6]	T	A	1.361e^-4	0.999	INTRON dpr6
2L	14953477	2L_14953477_SNP [dm3] 2L_14953477_SNP [dm6]	A	C	1.376e^-4	0.999	INTRON CG42313
3L	13643808	3L_13643808_SNP [dm3] 3L_13650708_SNP [dm6]	A	T	1.377e^-4	0.999	INTRON bru-3
2L	3548652	2L_3548652_SNP [dm3] 2L_3548652_SNP [dm6]	C	T	1.378e^-4	0.999	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12211550	2L_12211550_SNP [dm3] 2L_12211550_SNP [dm6]	C	G	1.387e^-4	0.999	INTRON aret
2R	6862651	2R_6862651_DEL [dm3] 2R_10975146_DEL [dm6]	TTT	T	1.399e^-4	0.999	INTERGENIC
3L	16062470	3L_16062470_SNP [dm3] 3L_16069370_SNP [dm6]	A	T	1.402e^-4	0.999	INTRON Mbs
3L	16062644	3L_16062644_SNP [dm3] 3L_16069544_SNP [dm6]	T	C	1.406e^-4	0.999	INTRON Mbs
3L	16279185	3L_16279185_SNP [dm3] 3L_16286085_SNP [dm6]	G	T	1.422e^-4	0.999	UPSTREAM CG13047 INTERGENIC
X	6346814	X_6346814_SNP [dm3] X_6452781_SNP [dm6]	T	G	1.434e^-4	0.999	INTRON CG42340
2L	10135017	2L_10135017_SNP [dm3] 2L_10135017_SNP [dm6]	C	T	1.437e^-4	0.999	INTRON CG44153
3L	7520163	3L_7520163_INS [dm3] 3L_7527063_INS [dm6]	G	GGG	1.439e^-4	0.999	UTR_3_PRIME ltl	TF binding site mE1_TFBS_chinmo
3L	1830654	3L_1830654_SNP [dm3] 3L_1830654_SNP [dm6]	G	T	1.456e^-4	0.999	INTRON Cpr62Ba
2L	4419294	2L_4419294_SNP [dm3] 2L_4419294_SNP [dm6]	A	G	1.458e^-4	0.999	UPSTREAM tRNA:CR31963 INTRON CG15431
3R	10196342	3R_10196342_SNP [dm3] 3R_14370620_SNP [dm6]	C	T	1.469e^-4	0.999	UPSTREAM NK7.1 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	13114352	2L_13114352_SNP [dm3] 2L_13114352_SNP [dm6]	C	T	1.471e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	7019257	3R_7019257_SNP [dm3] 3R_11193535_SNP [dm6]	T	C	1.477e^-4	0.999	INTERGENIC
2R	5122461	2R_5122461_SNP [dm3] 2R_9234956_SNP [dm6]	T	C	1.487e^-4	0.999	SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11400007	2L_11400007_SNP [dm3] 2L_11400007_SNP [dm6]	T	A	1.490e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs
2L	4129305	2L_4129305_SNP [dm3] 2L_4129305_SNP [dm6]	C	T	1.491e^-4	0.999	INTERGENIC
3R	25776883	3R_25776883_SNP [dm3] 3R_29951161_SNP [dm6]	A	G	1.492e^-4	0.999	UTR_3_PRIME TkR99D
X	17174279	X_17174279_SNP [dm3] X_17280246_SNP [dm6]	G	A	1.495e^-4	0.999	NON_SYNONYMOUS_CODING f DOWNSTREAM CG8664
3L	13643762	3L_13643762_SNP [dm3] 3L_13650662_SNP [dm6]	A	G	1.501e^-4	0.999	INTRON bru-3
2R	16321602	2R_16321602_SNP [dm3] 2R_20434097_SNP [dm6]	C	T	1.502e^-4	0.999	INTRON CG12484
2R	16872887	2R_16872887_SNP [dm3] 2R_20985382_SNP [dm6]	C	A	1.509e^-4	0.999	SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8504900	3R_8504900_SNP [dm3] 3R_12679178_SNP [dm6]	T	A	1.517e^-4	0.999	UPSTREAM mbo DOWNSTREAM Cyp313a4 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14920248	3R_14920248_SNP [dm3] 3R_19094526_SNP [dm6]	G	T	1.517e^-4	0.999	SYNONYMOUS_CODING mRpL55 UPSTREAM ATPsyn-d & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5872571	2L_5872571_SNP [dm3] 2L_5872571_SNP [dm6]	A	G	1.530e^-4	0.999	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	7012281	3R_7012281_SNP [dm3] 3R_11186559_SNP [dm6]	G	T	1.533e^-4	0.999	INTERGENIC
2R	10108856	2R_10108856_SNP [dm3] 2R_14221351_SNP [dm6]	T	C	1.543e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4062681	2L_4062681_SNP [dm3] 2L_4062681_SNP [dm6]	C	T	1.544e^-4	0.999	INTRON ed
3L	3278923	3L_3278923_SNP [dm3] 3L_3278923_SNP [dm6]	A	G	1.576e^-4	0.999	INTERGENIC
3R	16909419	3R_16909419_SNP [dm3] 3R_21083697_SNP [dm6]	G	A	1.579e^-4	0.999	UTR_3_PRIME RhoGAP93B
3R	7429570	3R_7429570_DEL [dm3] 3R_11603848_DEL [dm6]	TT	T	1.597e^-4	0.999	INTRON Jupiter
2R	14313873	2R_14313873_SNP [dm3] 2R_18426368_SNP [dm6]	A	C	1.607e^-4	0.999	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4915554	3L_4915554_SNP [dm3] 3L_4915554_SNP [dm6]	T	G	1.607e^-4	0.999	INTRON Rh50
3L	9728444	3L_9728444_SNP [dm3] 3L_9735344_SNP [dm6]	A	C	1.634e^-4	0.999	INTRON CG42268
3R	7337537	3R_7337537_SNP [dm3] 3R_11511815_SNP [dm6]	T	C	1.663e^-4	0.999	INTERGENIC
X	12360444	X_12360444_SNP [dm3] X_12466411_SNP [dm6]	C	A	1.667e^-4	0.999	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9886708	3R_9886708_SNP [dm3] 3R_14060986_SNP [dm6]	C	T	1.669e^-4	0.999	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	16279184	3L_16279184_SNP [dm3] 3L_16286084_SNP [dm6]	T	C	1.673e^-4	0.999	UPSTREAM CG13047 INTERGENIC
2R	4463521	2R_4463521_SNP [dm3] 2R_8576016_SNP [dm6]	A	C	1.678e^-4	0.999	INTRON CG42326
3L	16279192	3L_16279192_INS [dm3] 3L_16286092_INS [dm6]	T	ACGG	1.686e^-4	0.999	UPSTREAM CG13047 INTERGENIC
3R	12657679	3R_12657679_SNP [dm3] 3R_16831957_SNP [dm6]	C	T	1.695e^-4	0.999	EXON iab-8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	22189906	X_22189906_SNP [dm3] X_22788070_SNP [dm6]	A	G	1.710e^-4	0.999	INTRON CR44997
3L	12377062	3L_12377062_SNP [dm3] 3L_12383962_SNP [dm6]	C	G	1.714e^-4	0.999	INTRON Ncc69	TF binding site mE1_TFBS_HSA
2L	6704801	2L_6704801_DEL [dm3] 2L_6704801_DEL [dm6]	CTTAGGGGC	C	1.727e^-4	0.999	INTRON Tsp	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10585829	2R_10585829_SNP [dm3] 2R_14698324_SNP [dm6]	T	C	1.728e^-4	0.999	INTRON mspo
3R	21647677	3R_21647677_SNP [dm3] 3R_25821955_SNP [dm6]	A	C	1.730e^-4	0.999	INTERGENIC
X	17891110	X_17891110_SNP [dm3] X_17997077_SNP [dm6]	A	G	1.741e^-4	0.999	INTRON Sh
3L	8278719	3L_8278719_SNP [dm3] 3L_8285619_SNP [dm6]	A	T	1.747e^-4	0.999	INTRON cert	TF binding site mE1_TFBS_Trl
2L	9844913	2L_9844913_SNP [dm3] 2L_9844913_SNP [dm6]	A	C	1.747e^-4	0.999	INTRON nAChRalpha6
2R	17203691	2R_17203691_SNP [dm3] 2R_21316186_SNP [dm6]	A	G	1.749e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21397589	3R_21397589_SNP [dm3] 3R_25571867_SNP [dm6]	A	T	1.749e^-4	0.999	INTRON msi
3L	15709277	3L_15709277_SNP [dm3] 3L_15716177_SNP [dm6]	G	T	1.761e^-4	0.999	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	6371313	3R_6371313_SNP [dm3] 3R_10545591_SNP [dm6]	T	A	1.767e^-4	0.999	INTRON hth
2R	14313540	2R_14313540_SNP [dm3] 2R_18426035_SNP [dm6]	A	T	1.772e^-4	0.999	UTR_3_PRIME CG5174 UPSTREAM CG12263 DOWNSTREAM CG5174	TF binding site mE1_TFBS_Ubx
2L	13163259	2L_13163259_INS [dm3] 2L_13163259_INS [dm6]	T	TT	1.772e^-4	0.999	UTR_3_PRIME DnaJ-H DOWNSTREAM DnaJ-H & 1 other
2L	17170505	2L_17170505_SNP [dm3] 2L_17170505_SNP [dm6]	C	T	1.780e^-4	0.999	START_GAINED CG34106 UTR_5_PRIME CG34106 UTR_3_PRIME beat-IIIa UPSTREAM CG34106
3L	18921027	3L_18921027_SNP [dm3] 3L_18927927_SNP [dm6]	C	T	1.781e^-4	0.999	INTRON CG32204
3L	16977532	3L_16977532_SNP [dm3] 3L_16984432_SNP [dm6]	A	C	1.788e^-4	0.999	INTRON Exn
2L	6703433	2L_6703433_SNP [dm3] 2L_6703433_SNP [dm6]	T	G	1.794e^-4	0.999	INTRON Tsp
2L	11926134	2L_11926134_SNP [dm3] 2L_11926134_SNP [dm6]	A	G	1.801e^-4	0.999	INTRON Pde1c
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	1.803e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17891618	X_17891618_SNP [dm3] X_17997585_SNP [dm6]	G	A	1.804e^-4	0.999	INTRON Sh
3L	16235807	3L_16235807_INS [dm3] 3L_16242707_INS [dm6]	A	GCTGTCGC	1.814e^-4	0.999	INTERGENIC
2L	3924739	2L_3924739_SNP [dm3] 2L_3924739_SNP [dm6]	T	C	1.816e^-4	0.999	INTRON fred
3L	16279187	3L_16279187_SNP [dm3] 3L_16286087_SNP [dm6]	T	C	1.828e^-4	0.999	UPSTREAM CG13047 INTERGENIC
3L	18089298	3L_18089298_SNP [dm3] 3L_18096198_SNP [dm6]	T	C	1.829e^-4	0.999	INTRON CG13698
3R	16909327	3R_16909327_SNP [dm3] 3R_21083605_SNP [dm6]	C	T	1.833e^-4	0.999	UTR_3_PRIME RhoGAP93B
2L	11926143	2L_11926143_SNP [dm3] 2L_11926143_SNP [dm6]	G	T	1.845e^-4	0.999	INTRON Pde1c
2L	13061616	2L_13061616_SNP [dm3] 2L_13061616_SNP [dm6]	T	A	1.849e^-4	0.999	INTERGENIC
2L	9602505	2L_9602505_SNP [dm3] 2L_9602505_SNP [dm6]	G	C	1.863e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16237551	3L_16237551_SNP [dm3] 3L_16244451_SNP [dm6]	T	A	1.864e^-4	0.999	INTERGENIC
2L	1188395	2L_1188395_SNP [dm3] 2L_1188395_SNP [dm6]	G	A	1.878e^-4	0.999	INTRON CG5001	TF binding site mE1_TFBS_inv
X	12050700	X_12050700_SNP [dm3] X_12156667_SNP [dm6]	A	G	1.880e^-4	0.999	INTRON Ten-a
3L	18924029	3L_18924029_SNP [dm3] 3L_18930929_SNP [dm6]	T	G	1.898e^-4	0.999	INTRON CG32204
3L	18924050	3L_18924050_SNP [dm3] 3L_18930950_SNP [dm6]	T	A	1.898e^-4	0.999	INTRON CG32204
3L	18924386	3L_18924386_SNP [dm3] 3L_18931286_SNP [dm6]	A	G	1.901e^-4	0.999	INTRON CG32204	TF binding site mE1_TFBS_inv
X	16161759	X_16161759_SNP [dm3] X_16267726_SNP [dm6]	G	A	1.905e^-4	0.999	INTRON kat80
3L	15410212	3L_15410212_SNP [dm3] 3L_15417112_SNP [dm6]	G	A	1.909e^-4	0.999	INTERGENIC
3L	15410252	3L_15410252_SNP [dm3] 3L_15417152_SNP [dm6]	G	A	1.909e^-4	0.999	INTERGENIC
2L	9883973	2L_9883973_INS [dm3] 2L_9883973_INS [dm6]	A	AAA	1.929e^-4	0.999	INTRON nAChRalpha6
3R	21647678	3R_21647678_SNP [dm3] 3R_25821956_SNP [dm6]	T	C	1.938e^-4	0.999	INTERGENIC
3L	3785978	3L_3785978_SNP [dm3] 3L_3785978_SNP [dm6]	C	G	1.945e^-4	0.999	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	1186529	2L_1186529_SNP [dm3] 2L_1186529_SNP [dm6]	G	T	1.948e^-4	0.999	DOWNSTREAM Tgt INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7899573	3L_7899573_SNP [dm3] 3L_7906473_SNP [dm6]	T	G	1.954e^-4	0.999	INTRON pbl
3R	6539901	3R_6539901_SNP [dm3] 3R_10714179_SNP [dm6]	T	C	1.965e^-4	0.999	UPSTREAM CG4073 INTERGENIC
X	6264943	X_6264943_SNP [dm3] X_6370910_SNP [dm6]	T	A	1.967e^-4	0.999	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
2R	17556702	2R_17556702_SNP [dm3] 2R_21669197_SNP [dm6]	C	A	1.967e^-4	0.999	SYNONYMOUS_CODING CG42380 UTR_5_PRIME CG9865 UTR_3_PRIME CG42379 & 1 other UPSTREAM NC2alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	14313548	2R_14313548_SNP [dm3] 2R_18426043_SNP [dm6]	T	A	1.980e^-4	0.999	UTR_3_PRIME CG5174 UPSTREAM CG12263 DOWNSTREAM CG5174	TF binding site mE1_TFBS_Ubx
3R	16911039	3R_16911039_SNP [dm3] 3R_21085317_SNP [dm6]	G	T	1.982e^-4	0.999	SYNONYMOUS_CODING RhoGAP93B
X	12955758	X_12955758_SNP [dm3] X_13061725_SNP [dm6]	C	G	1.992e^-4	0.999	UPSTREAM mir-971 INTRON rad
3L	5893565	3L_5893565_SNP [dm3] 3L_5900465_SNP [dm6]	C	T	1.992e^-4	0.999	SYNONYMOUS_CODING CG32409 DOWNSTREAM QC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4688270	X_4688270_SNP [dm3] X_4794237_SNP [dm6]	A	G	1.992e^-4	0.999	INTERGENIC
2R	12297519	2R_12297519_SNP [dm3] 2R_16410014_SNP [dm6]	T	G	1.992e^-4	0.999	INTRON Sema-2b
2R	17203370	2R_17203370_SNP [dm3] 2R_21315865_SNP [dm6]	G	A	1.996e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3L	11310813	3L_11310813_SNP [dm3] 3L_11317713_SNP [dm6]	G	A	2.002e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16421458	3L_16421458_SNP [dm3] 3L_16428358_SNP [dm6]	T	A	2.011e^-4	0.999	INTRON CG33158 & 1 other
3R	13191612	3R_13191612_SNP [dm3] 3R_17365890_SNP [dm6]	T	G	2.024e^-4	0.999	UTR_5_PRIME beat-IIa
3L	8216719	3L_8216719_SNP [dm3] 3L_8223619_SNP [dm6]	C	A	2.026e^-4	0.999	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6110040	2L_6110040_SNP [dm3] 2L_6110040_SNP [dm6]	T	C	2.035e^-4	0.999	UTR_5_PRIME stai INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8731831	3R_8731831_SNP [dm3] 3R_12906109_SNP [dm6]	A	T	2.045e^-4	0.999	INTERGENIC
3L	18559665	3L_18559665_SNP [dm3] 3L_18566565_SNP [dm6]	C	T	2.065e^-4	0.999	INTRON AstC-R1
3L	13694747	3L_13694747_MNP [dm3] 3L_13701647_MNP [dm6]	GGTTC	TAAAT	2.071e^-4	0.999	INTRON bru-3
2L	3548745	2L_3548745_SNP [dm3] 2L_3548745_SNP [dm6]	G	T	2.072e^-4	0.999	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11276507	2R_11276507_SNP [dm3] 2R_15389002_SNP [dm6]	C	A	2.080e^-4	0.999	INTERGENIC
2L	15397988	2L_15397988_SNP [dm3] 2L_15397988_SNP [dm6]	A	T	2.081e^-4	0.999	DOWNSTREAM CR45373 INTERGENIC
3L	3013320	3L_3013320_SNP [dm3] 3L_3013320_SNP [dm6]	C	T	2.081e^-4	0.999	INTERGENIC
3L	21615932	3L_21615932_SNP [dm3] 3L_21622832_SNP [dm6]	A	T	2.091e^-4	0.999	INTRON CG7166
2L	2179744	2L_2179744_SNP [dm3] 2L_2179744_SNP [dm6]	G	T	2.092e^-4	0.999	UPSTREAM aop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12947140	2L_12947140_SNP [dm3] 2L_12947140_SNP [dm6]	A	G	2.131e^-4	0.999	INTERGENIC
3R	14835695	3R_14835695_INS [dm3] 3R_19009973_INS [dm6]	C	CTGC	2.146e^-4	0.999	INTRON gukh
3R	16994893	3R_16994893_DEL [dm3] 3R_21169171_DEL [dm6]	AATTAGAAGCAGTT...	A	2.146e^-4	0.999	UPSTREAM Snmp1 INTRON SNF4Agamma
3L	1673307	3L_1673307_SNP [dm3] 3L_1673307_SNP [dm6]	G	T	2.147e^-4	0.999	UPSTREAM CG13930 INTERGENIC
3L	3142357	3L_3142357_SNP [dm3] 3L_3142357_SNP [dm6]	A	G	2.154e^-4	0.999	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15410216	3L_15410216_SNP [dm3] 3L_15417116_SNP [dm6]	A	T	2.157e^-4	0.999	INTERGENIC
3L	15410245	3L_15410245_SNP [dm3] 3L_15417145_SNP [dm6]	C	G	2.157e^-4	0.999	INTERGENIC
3L	1297944	3L_1297944_SNP [dm3] 3L_1297944_SNP [dm6]	T	G	2.166e^-4	0.999	NON_SYNONYMOUS_CODING Rabex-5 UPSTREAM scf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2179737	2L_2179737_SNP [dm3] 2L_2179737_SNP [dm6]	C	T	2.171e^-4	0.999	UPSTREAM aop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18859846	3L_18859846_SNP [dm3] 3L_18866746_SNP [dm6]	T	C	2.171e^-4	0.999	SYNONYMOUS_CODING CG14074	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4356854	2L_4356854_SNP [dm3] 2L_4356854_SNP [dm6]	G	T	2.178e^-4	0.999	INTERGENIC
3L	18929241	3L_18929241_SNP [dm3] 3L_18936141_SNP [dm6]	A	T	2.181e^-4	0.999	INTRON CG32204
3R	12684934	3R_12684934_SNP [dm3] 3R_16859212_SNP [dm6]	G	A	2.196e^-4	0.999	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8010879	2L_8010879_SNP [dm3] 2L_8010879_SNP [dm6]	G	A	2.197e^-4	0.999	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	2182086	3L_2182086_INS [dm3] 3L_2182086_INS [dm6]	T	TCA	2.205e^-4	0.999	INTERGENIC
X	17160011	X_17160011_SNP [dm3] X_17265978_SNP [dm6]	C	T	2.205e^-4	0.999	INTRON f	TF binding site BDTNP1_TFBS_dl
3L	13006587	3L_13006587_SNP [dm3] 3L_13013487_SNP [dm6]	C	T	2.209e^-4	0.999	NON_SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_sens
3L	18089280	3L_18089280_SNP [dm3] 3L_18096180_SNP [dm6]	C	G	2.241e^-4	0.999	INTRON CG13698
3R	9878184	3R_9878184_SNP [dm3] 3R_14052462_SNP [dm6]	C	G	2.246e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5675566	2L_5675566_SNP [dm3] 2L_5675566_SNP [dm6]	G	C	2.250e^-4	0.999	INTERGENIC
3L	1913582	3L_1913582_SNP [dm3] 3L_1913582_SNP [dm6]	A	C	2.261e^-4	0.999	INTERGENIC
3L	22539624	3L_22539624_SNP [dm3] 3L_22546524_SNP [dm6]	A	C	2.262e^-4	0.999	INTERGENIC
2R	12229774	2R_12229774_SNP [dm3] 2R_16342269_SNP [dm6]	A	G	2.263e^-4	0.999	SYNONYMOUS_CODING CG7997
X	6273453	X_6273453_SNP [dm3] X_6379420_SNP [dm6]	G	A	2.266e^-4	0.999	INTERGENIC
3L	7473283	3L_7473283_SNP [dm3] 3L_7480183_SNP [dm6]	C	A	2.274e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16278770	3L_16278770_SNP [dm3] 3L_16285670_SNP [dm6]	T	C	2.277e^-4	0.999	UPSTREAM CG13047 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13710140	3L_13710140_SNP [dm3] 3L_13717040_SNP [dm6]	A	C	2.288e^-4	0.999	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13710163	3L_13710163_SNP [dm3] 3L_13717063_SNP [dm6]	G	A	2.288e^-4	0.999	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7392030	2R_7392030_SNP [dm3] 2R_11504525_SNP [dm6]	C	A	2.291e^-4	0.999	INTRON inv
3R	25900764	3R_25900764_SNP [dm3] 3R_30075042_SNP [dm6]	A	T	2.302e^-4	0.999	INTRON sima
3L	16977484	3L_16977484_SNP [dm3] 3L_16984384_SNP [dm6]	T	G	2.305e^-4	0.999	INTRON Exn
2L	10791423	2L_10791423_SNP [dm3] 2L_10791423_SNP [dm6]	G	C	2.309e^-4	0.999	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
3L	13710281	3L_13710281_SNP [dm3] 3L_13717181_SNP [dm6]	T	C	2.327e^-4	0.999	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3929041	2L_3929041_SNP [dm3] 2L_3929041_SNP [dm6]	G	A	2.330e^-4	0.999	INTRON fred
3L	13014991	3L_13014991_SNP [dm3] 3L_13021891_SNP [dm6]	T	C	2.330e^-4	0.999	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17163427	X_17163427_SNP [dm3] X_17269394_SNP [dm6]	C	T	2.332e^-4	0.999	INTRON f
3L	12560489	3L_12560489_SNP [dm3] 3L_12567389_SNP [dm6]	G	A	2.337e^-4	0.999	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12560499	3L_12560499_SNP [dm3] 3L_12567399_SNP [dm6]	G	T	2.337e^-4	0.999	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12560500	3L_12560500_INS [dm3] 3L_12567400_INS [dm6]	G	GGA	2.337e^-4	0.999	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15785316	3L_15785316_SNP [dm3] 3L_15792216_SNP [dm6]	A	T	2.340e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8010888	2L_8010888_SNP [dm3] 2L_8010888_SNP [dm6]	T	A	2.344e^-4	0.999	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	15299310	2L_15299310_DEL [dm3] 2L_15299310_DEL [dm6]	AA	A	2.376e^-4	0.999	UTR_3_PRIME CG15262
2L	7094583	2L_7094583_SNP [dm3] 2L_7094583_SNP [dm6]	A	C	2.377e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15410209	3L_15410209_SNP [dm3] 3L_15417109_SNP [dm6]	G	T	2.401e^-4	0.999	INTERGENIC
3L	2776285	3L_2776285_SNP [dm3] 3L_2776285_SNP [dm6]	T	C	2.403e^-4	0.999	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10159006	3L_10159006_SNP [dm3] 3L_10165906_SNP [dm6]	A	T	2.414e^-4	0.999	UTR_3_PRIME CG6628 INTRON dpr10
3L	16062647	3L_16062647_SNP [dm3] 3L_16069547_SNP [dm6]	C	T	2.426e^-4	0.999	INTRON Mbs
2R	12229678	2R_12229678_SNP [dm3] 2R_16342173_SNP [dm6]	G	T	2.427e^-4	0.999	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs	TF binding site mE1_TFBS_sens
3R	9195165	3R_9195165_SNP [dm3] 3R_13369443_SNP [dm6]	T	A	2.432e^-4	0.999	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
3R	2010751	3R_2010751_INS [dm3] 3R_6185029_INS [dm6]	T	TC	2.437e^-4	0.999	EXON CR31562
3R	2010755	3R_2010755_INS [dm3] 3R_6185033_INS [dm6]	T	TTAAGGCATTCATTAGGTAC...	2.437e^-4	0.999	EXON CR31562
2R	14207773	2R_14207773_SNP [dm3] 2R_18320268_SNP [dm6]	G	T	2.451e^-4	0.999	INTRON sbb
3R	9132580	3R_9132580_SNP [dm3] 3R_13306858_SNP [dm6]	A	G	2.452e^-4	0.999	INTRON CG32473
X	17162984	X_17162984_SNP [dm3] X_17268951_SNP [dm6]	C	T	2.455e^-4	0.999	SYNONYMOUS_CODING f INTRON f
3L	1825165	3L_1825165_SNP [dm3] 3L_1825165_SNP [dm6]	C	T	2.459e^-4	0.999	NON_SYNONYMOUS_CODING Cpr62Ba
X	16254435	X_16254435_SNP [dm3] X_16360402_SNP [dm6]	A	T	2.471e^-4	0.999	INTRON Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11848708	2R_11848708_SNP [dm3] 2R_15961203_SNP [dm6]	G	A	2.473e^-4	0.999	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18079115	2R_18079115_SNP [dm3] 2R_22191610_SNP [dm6]	T	A	2.481e^-4	0.999	INTRON Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10898498	3R_10898498_SNP [dm3] 3R_15072776_SNP [dm6]	T	A	2.484e^-4	0.999	INTRON dpr9
2R	8383707	2R_8383707_SNP [dm3] 2R_12496202_SNP [dm6]	A	G	2.488e^-4	0.999	INTRON fdl & 1 other
X	18422806	X_18422806_SNP [dm3] X_18528773_SNP [dm6]	G	A	2.494e^-4	0.999	NON_SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
2R	10108839	2R_10108839_INS [dm3] 2R_14221334_INS [dm6]	G	GAGAT	2.494e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16460881	2L_16460881_SNP [dm3] 2L_16460881_SNP [dm6]	G	A	2.505e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs
X	6264869	X_6264869_SNP [dm3] X_6370836_SNP [dm6]	G	A	2.507e^-4	0.999	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
3R	20640684	3R_20640684_SNP [dm3] 3R_24814962_SNP [dm6]	A	G	2.508e^-4	0.999	SYNONYMOUS_CODING CG5808 UPSTREAM CG5807 DOWNSTREAM CG34150	TF binding site mE1_TFBS_cad
X	14527860	X_14527860_SNP [dm3] X_14633827_SNP [dm6]	C	A	2.519e^-4	0.999	INTRON NetA
2R	12704511	2R_12704511_SNP [dm3] 2R_16817006_SNP [dm6]	G	A	2.528e^-4	0.999	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9960996	X_9960996_SNP [dm3] X_10066963_SNP [dm6]	A	G	2.528e^-4	0.999	INTRON CG15312
3L	1684397	3L_1684397_SNP [dm3] 3L_1684397_SNP [dm6]	T	G	2.531e^-4	0.999	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	16273444	3L_16273444_SNP [dm3] 3L_16280344_SNP [dm6]	T	A	2.548e^-4	0.999	UPSTREAM CG13064 DOWNSTREAM CG13049 INTERGENIC
2L	17401089	2L_17401089_SNP [dm3] 2L_17401089_SNP [dm6]	T	A	2.550e^-4	0.999	INTRON CLIP-190
2R	12329246	2R_12329246_SNP [dm3] 2R_16441741_SNP [dm6]	T	A	2.551e^-4	0.999	INTERGENIC
3L	12476921	3L_12476921_SNP [dm3] 3L_12483821_SNP [dm6]	G	A	2.558e^-4	0.999	INTRON CG10663 & 1 other
3L	18089278	3L_18089278_SNP [dm3] 3L_18096178_SNP [dm6]	G	A	2.559e^-4	0.999	INTRON CG13698
2R	4038878	2R_4038878_SNP [dm3] 2R_8151373_SNP [dm6]	C	T	2.566e^-4	0.999	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2138684	3L_2138684_SNP [dm3] 3L_2138684_SNP [dm6]	T	C	2.583e^-4	0.999	INTRON zormin
X	14566468	X_14566468_SNP [dm3] X_14672435_SNP [dm6]	C	T	2.604e^-4	0.999	INTERGENIC
3L	18920599	3L_18920599_SNP [dm3] 3L_18927499_SNP [dm6]	A	G	2.605e^-4	0.999	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	12764490	2L_12764490_SNP [dm3] 2L_12764490_SNP [dm6]	T	C	2.612e^-4	0.999	INTERGENIC
X	17892632	X_17892632_SNP [dm3] X_17998599_SNP [dm6]	A	T	2.613e^-4	0.999	INTRON Sh
3L	22626551	3L_22626551_SNP [dm3] 3L_22633451_SNP [dm6]	G	T	2.616e^-4	0.999	INTRON CG14459
2R	17638309	2R_17638309_SNP [dm3] 2R_21750804_SNP [dm6]	G	T	2.616e^-4	0.999	INTERGENIC
3L	9495671	3L_9495671_SNP [dm3] 3L_9502571_SNP [dm6]	A	T	2.618e^-4	0.999	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	306611	2L_306611_SNP [dm3] 2L_306611_SNP [dm6]	G	A	2.619e^-4	0.999	INTRON Plc21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5553084	X_5553084_SNP [dm3] X_5659051_SNP [dm6]	C	T	2.620e^-4	0.999	INTRON CG42265	TF binding site mE1_TFBS_chinmo
2L	22264582	2L_22264582_SNP [dm3] 2L_22264582_SNP [dm6]	C	A	2.626e^-4	0.999	INTERGENIC	transposable element FlyBase
3R	20374314	3R_20374314_SNP [dm3] 3R_24548592_SNP [dm6]	C	T	2.631e^-4	0.999	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4705203	3R_4705203_DEL [dm3] 3R_8879481_DEL [dm6]	CGAGGCGTAGC...	G	2.639e^-4	0.999	INTRON pyd
2L	7208137	2L_7208137_SNP [dm3] 2L_7208137_SNP [dm6]	C	A	2.642e^-4	0.999	INTRON CG13784
3R	14299043	3R_14299043_SNP [dm3] 3R_18473321_SNP [dm6]	T	C	2.644e^-4	0.999	INTRON fru
3L	18925380	3L_18925380_SNP [dm3] 3L_18932280_SNP [dm6]	G	A	2.659e^-4	0.999	INTRON CG32204
2L	9601881	2L_9601881_SNP [dm3] 2L_9601881_SNP [dm6]	T	G	2.660e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17780481	2R_17780481_SNP [dm3] 2R_21892976_SNP [dm6]	T	G	2.663e^-4	0.999	INTRON Fili
X	17894139	X_17894139_SNP [dm3] X_18000106_SNP [dm6]	T	C	2.669e^-4	0.999	INTRON Sh
3L	2170038	3L_2170038_SNP [dm3] 3L_2170038_SNP [dm6]	T	C	2.673e^-4	0.999	NON_SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	16668190	2R_16668190_SNP [dm3] 2R_20780685_SNP [dm6]	G	A	2.682e^-4	0.999	EXON CR44666
3L	9046729	3L_9046729_SNP [dm3] 3L_9053629_SNP [dm6]	A	G	2.685e^-4	0.999	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6659330	2L_6659330_SNP [dm3] 2L_6659330_SNP [dm6]	A	C	2.705e^-4	0.999	INTRON CG11070	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11926136	2L_11926136_SNP [dm3] 2L_11926136_SNP [dm6]	C	A	2.714e^-4	0.999	INTRON Pde1c
3L	16277555	3L_16277555_INS [dm3] 3L_16284455_INS [dm6]	G	GTGG	2.714e^-4	0.999	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3L	7601186	3L_7601186_SNP [dm3] 3L_7608086_SNP [dm6]	T	C	2.717e^-4	0.999	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12260989	2R_12260989_SNP [dm3] 2R_16373484_SNP [dm6]	C	T	2.721e^-4	0.999	INTERGENIC
3R	9195156	3R_9195156_SNP [dm3] 3R_13369434_SNP [dm6]	A	G	2.729e^-4	0.999	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
X	14527837	X_14527837_SNP [dm3] X_14633804_SNP [dm6]	C	T	2.729e^-4	0.999	INTRON NetA
2R	9362289	2R_9362289_SNP [dm3] 2R_13474784_SNP [dm6]	C	T	2.750e^-4	0.999	INTRON arr
3L	18568985	3L_18568985_SNP [dm3] 3L_18575885_SNP [dm6]	A	G	2.753e^-4	0.999	UTR_3_PRIME AstC-R1
3R	15806856	3R_15806856_SNP [dm3] 3R_19981134_SNP [dm6]	C	T	2.774e^-4	0.999	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9632090	2L_9632090_SNP [dm3] 2L_9632090_SNP [dm6]	A	T	2.781e^-4	0.999	INTERGENIC
3L	10571056	3L_10571056_SNP [dm3] 3L_10577956_SNP [dm6]	C	T	2.790e^-4	0.999	INTRON A2bp1
3R	7088296	3R_7088296_SNP [dm3] 3R_11262574_SNP [dm6]	C	T	2.792e^-4	0.999	INTERGENIC
2L	9039912	2L_9039912_SNP [dm3] 2L_9039912_SNP [dm6]	A	G	2.794e^-4	0.999	INTERGENIC
X	9012737	X_9012737_SNP [dm3] X_9118704_SNP [dm6]	A	G	2.807e^-4	0.999	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	1482492	3L_1482492_DEL [dm3] 3L_1482492_DEL [dm6]	ATA	A	2.809e^-4	0.999	INTRON stet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15164984	3L_15164984_SNP [dm3] 3L_15171884_SNP [dm6]	A	C	2.818e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14138047	3L_14138047_SNP [dm3] 3L_14144947_SNP [dm6]	T	A	2.822e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs
2L	13074767	2L_13074767_SNP [dm3] 2L_13074767_SNP [dm6]	G	T	2.824e^-4	0.999	INTERGENIC
2R	15241341	2R_15241341_DEL [dm3] 2R_19353836_DEL [dm6]	AA	A	2.824e^-4	0.999	INTRON Rgk1
X	3214305	X_3214305_SNP [dm3] X_3320272_SNP [dm6]	A	G	2.827e^-4	0.999	INTRON dnc & 1 other
2L	6235392	2L_6235392_SNP [dm3] 2L_6235392_SNP [dm6]	C	G	2.839e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5124606	2R_5124606_SNP [dm3] 2R_9237101_SNP [dm6]	A	C	2.840e^-4	0.999	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
3L	22522032	3L_22522032_SNP [dm3] 3L_22528932_SNP [dm6]	G	T	2.843e^-4	0.999	INTERGENIC
2L	9602545	2L_9602545_SNP [dm3] 2L_9602545_SNP [dm6]	G	A	2.854e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9383713	2L_9383713_INS [dm3] 2L_9383713_INS [dm6]	C	CATTTTTGC	2.854e^-4	0.999	INTRON Shawl
3L	4915555	3L_4915555_DEL [dm3] 3L_4915555_DEL [dm6]	TCCCG	T	2.877e^-4	0.999	INTRON Rh50
3L	18926129	3L_18926129_SNP [dm3] 3L_18933029_SNP [dm6]	T	G	2.878e^-4	0.999	UTR_5_PRIME CG32204
2L	14089834	2L_14089834_SNP [dm3] 2L_14089834_SNP [dm6]	G	T	2.878e^-4	0.999	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
3L	11368986	3L_11368986_SNP [dm3] 3L_11375886_SNP [dm6]	G	T	2.881e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22219388	2L_22219388_SNP [dm3] 2L_22219388_SNP [dm6]	C	G	2.895e^-4	0.999	INTERGENIC	transposable element FlyBase
3R	14770622	3R_14770622_SNP [dm3] 3R_18944900_SNP [dm6]	T	C	2.895e^-4	0.999	INTRON CG42613
3L	12653664	3L_12653664_SNP [dm3] 3L_12660564_SNP [dm6]	G	C	2.900e^-4	0.999	DOWNSTREAM CR44553 INTERGENIC
2L	14954794	2L_14954794_SNP [dm3] 2L_14954794_SNP [dm6]	G	T	2.901e^-4	0.999	INTRON CG42313
3L	19634274	3L_19634274_SNP [dm3] 3L_19641174_SNP [dm6]	C	G	2.902e^-4	0.999	NON_SYNONYMOUS_CODING CG8786
3L	1433361	3L_1433361_DEL [dm3] 3L_1433361_DEL [dm6]	GTTG	G	2.916e^-4	0.999	DOWNSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14969192	2L_14969192_SNP [dm3] 2L_14969192_SNP [dm6]	T	C	2.917e^-4	0.999	INTRON CG42313
3L	9723752	3L_9723752_SNP [dm3] 3L_9730652_SNP [dm6]	C	T	2.927e^-4	0.999	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11399786	2L_11399786_SNP [dm3] 2L_11399786_SNP [dm6]	T	C	2.927e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs
2L	6699929	2L_6699929_SNP [dm3] 2L_6699929_SNP [dm6]	G	A	2.944e^-4	0.999	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11795989	2R_11795989_SNP [dm3] 2R_15908484_SNP [dm6]	T	C	2.969e^-4	0.999	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8984453	2L_8984453_SNP [dm3] 2L_8984453_SNP [dm6]	A	G	2.969e^-4	0.999	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16910041	3R_16910041_SNP [dm3] 3R_21084319_SNP [dm6]	C	T	2.973e^-4	0.999	INTRON RhoGAP93B
3L	7474865	3L_7474865_SNP [dm3] 3L_7481765_SNP [dm6]	G	C	2.978e^-4	0.999	INTERGENIC
3R	15073874	3R_15073874_SNP [dm3] 3R_19248152_SNP [dm6]	T	C	2.985e^-4	0.999	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	5146812	3L_5146812_SNP [dm3] 3L_5153712_SNP [dm6]	C	T	2.991e^-4	0.999	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10668722	2R_10668722_DEL [dm3] 2R_14781217_DEL [dm6]	CAAAC	C	3.000e^-4	0.999	INTRON kn
2L	22264695	2L_22264695_SNP [dm3] 2L_22264695_SNP [dm6]	A	T	3.019e^-4	0.999	INTERGENIC	transposable element FlyBase
3L	18924491	3L_18924491_SNP [dm3] 3L_18931391_SNP [dm6]	T	C	3.022e^-4	0.999	INTRON CG32204	TF binding site mE1_TFBS_inv
3L	18929240	3L_18929240_SNP [dm3] 3L_18936140_SNP [dm6]	G	T	3.025e^-4	0.999	INTRON CG32204
3R	20326464	3R_20326464_SNP [dm3] 3R_24500742_SNP [dm6]	A	G	3.026e^-4	0.999	INTERGENIC
2R	16664081	2R_16664081_SNP [dm3] 2R_20776576_SNP [dm6]	T	C	3.030e^-4	0.999	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
X	8398163	X_8398163_DEL [dm3] X_8504130_DEL [dm6]	TGTTTACTCTT...	T	3.033e^-4	0.999	INTRON CG33181
X	17163393	X_17163393_SNP [dm3] X_17269360_SNP [dm6]	C	T	3.037e^-4	0.999	INTRON f
2L	3179437	2L_3179437_SNP [dm3] 2L_3179437_SNP [dm6]	A	G	3.040e^-4	0.999	INTRON CG34393
2L	3574841	2L_3574841_SNP [dm3] 2L_3574841_SNP [dm6]	T	G	3.057e^-4	0.999	UPSTREAM CR43822 INTERGENIC
3R	4992736	3R_4992736_SNP [dm3] 3R_9167014_SNP [dm6]	C	T	3.061e^-4	0.999	INTRON pum
3R	9195213	3R_9195213_SNP [dm3] 3R_13369491_SNP [dm6]	G	A	3.063e^-4	0.999	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
3R	8504898	3R_8504898_SNP [dm3] 3R_12679176_SNP [dm6]	T	A	3.064e^-4	0.999	UPSTREAM mbo DOWNSTREAM Cyp313a4 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10049041	3L_10049041_SNP [dm3] 3L_10055941_SNP [dm6]	G	T	3.067e^-4	0.999	INTRON dpr6
X	11162595	X_11162595_SNP [dm3] X_11268562_SNP [dm6]	G	C	3.075e^-4	0.999	INTRON CG44422
3L	3103554	3L_3103554_SNP [dm3] 3L_3103554_SNP [dm6]	A	T	3.130e^-4	0.999	INTRON Cht7
2L	22190792	2L_22190792_INS [dm3] 2L_22190792_INS [dm6]	A	AGGCCCACCA	3.132e^-4	0.999	INTRON Ir40a
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	3.139e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	3.139e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	3.139e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14245502	2L_14245502_SNP [dm3] 2L_14245502_SNP [dm6]	G	T	3.141e^-4	0.999	INTERGENIC
2L	9601878	2L_9601878_SNP [dm3] 2L_9601878_SNP [dm6]	G	C	3.154e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16265564	3L_16265564_SNP [dm3] 3L_16272464_SNP [dm6]	C	T	3.156e^-4	0.999	UPSTREAM CG13066 DOWNSTREAM CG13067 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11795426	3R_11795426_SNP [dm3] 3R_15969704_SNP [dm6]	A	C	3.167e^-4	0.999	INTRON mor	TF binding site mE1_TFBS_cad
3L	21759517	3L_21759517_SNP [dm3] 3L_21766417_SNP [dm6]	A	G	3.173e^-4	0.999	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18859499	2R_18859499_SNP [dm3] 2R_22971976_SNP [dm6]	T	G	3.183e^-4	0.999	INTERGENIC
2L	15102406	2L_15102406_SNP [dm3] 2L_15102406_SNP [dm6]	A	C	3.185e^-4	0.999	INTERGENIC
X	18814040	X_18814040_SNP [dm3] X_18920007_SNP [dm6]	A	G	3.188e^-4	0.999	INTERGENIC
2R	9978434	2R_9978434_SNP [dm3] 2R_14090929_SNP [dm6]	A	G	3.191e^-4	0.999	SYNONYMOUS_CODING CG42287 UPSTREAM CG42288 INTRON Prosap
2L	12424331	2L_12424331_SNP [dm3] 2L_12424331_SNP [dm6]	C	T	3.196e^-4	0.999	UPSTREAM vir-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	1546799	3L_1546799_SNP [dm3] 3L_1546799_SNP [dm6]	A	T	3.211e^-4	0.999	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18926099	3L_18926099_SNP [dm3] 3L_18932999_SNP [dm6]	C	T	3.217e^-4	0.999	UTR_5_PRIME CG32204
3L	12377159	3L_12377159_SNP [dm3] 3L_12384059_SNP [dm6]	A	C	3.217e^-4	0.999	INTRON Ncc69
2L	3549916	2L_3549916_SNP [dm3] 2L_3549916_SNP [dm6]	G	A	3.218e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14688432	3L_14688432_SNP [dm3] 3L_14695332_SNP [dm6]	G	T	3.227e^-4	0.999	INTRON ome
3R	20264674	3R_20264674_SNP [dm3] 3R_24438952_SNP [dm6]	C	G	3.229e^-4	0.999	UPSTREAM CR43455 INTRON nAChRalpha1
3L	827264	3L_827264_SNP [dm3] 3L_827264_SNP [dm6]	C	A	3.242e^-4	0.999	UPSTREAM snoRNA:Me28S-C788b DOWNSTREAM snoRNA:Me28S-C788a & 2 others INTRON CG13900 & 1 other
X	21280848	X_21280848_SNP [dm3] X_21409821_SNP [dm6]	G	A	3.245e^-4	0.999	EXON CR45003
X	2361067	X_2361067_INS [dm3] X_2467034_INS [dm6]	T	TT	3.253e^-4	0.999	INTRON boi
2L	13061409	2L_13061409_SNP [dm3] 2L_13061409_SNP [dm6]	C	T	3.255e^-4	0.999	INTERGENIC
2L	13061410	2L_13061410_SNP [dm3] 2L_13061410_SNP [dm6]	C	T	3.255e^-4	0.999	INTERGENIC
3L	7165662	3L_7165662_SNP [dm3] 3L_7172562_SNP [dm6]	G	T	3.264e^-4	0.999	SYNONYMOUS_CODING Dscam2 INTRON Dscam2
3L	1612135	3L_1612135_SNP [dm3] 3L_1612135_SNP [dm6]	A	C	3.265e^-4	0.999	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	15541670	X_15541670_SNP [dm3] X_15647637_SNP [dm6]	A	G	3.271e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20995358	3L_20995358_SNP [dm3] 3L_21002258_SNP [dm6]	G	A	3.272e^-4	0.999	INTRON skd
2R	14179152	2R_14179152_DEL [dm3] 2R_18291647_DEL [dm6]	CC	C	3.275e^-4	0.999	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15072582	2L_15072582_SNP [dm3] 2L_15072582_SNP [dm6]	A	C	3.276e^-4	0.999	SYNONYMOUS_CODING vas DOWNSTREAM vas
2R	14230075	2R_14230075_SNP [dm3] 2R_18342570_SNP [dm6]	C	A	3.276e^-4	0.999	INTRON sbb
2R	16665907	2R_16665907_SNP [dm3] 2R_20778402_SNP [dm6]	G	A	3.290e^-4	0.999	SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
3R	15073229	3R_15073229_SNP [dm3] 3R_19247507_SNP [dm6]	T	A	3.294e^-4	0.999	NON_SYNONYMOUS_CODING CG5217	TF binding site mE1_TFBS_sens
3L	10048571	3L_10048571_SNP [dm3] 3L_10055471_SNP [dm6]	A	G	3.301e^-4	0.999	INTRON dpr6
2L	7208348	2L_7208348_SNP [dm3] 2L_7208348_SNP [dm6]	A	G	3.304e^-4	0.999	SPLICE_SITE_REGION CG13784 INTRON CG13784
3R	20374365	3R_20374365_SNP [dm3] 3R_24548643_SNP [dm6]	T	G	3.309e^-4	0.999	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7340839	3R_7340839_SNP [dm3] 3R_11515117_SNP [dm6]	T	C	3.319e^-4	0.999	INTERGENIC
X	4688520	X_4688520_SNP [dm3] X_4794487_SNP [dm6]	C	T	3.321e^-4	0.999	INTERGENIC
2L	13061615	2L_13061615_SNP [dm3] 2L_13061615_SNP [dm6]	C	A	3.325e^-4	0.999	INTERGENIC
3L	1612263	3L_1612263_SNP [dm3] 3L_1612263_SNP [dm6]	C	G	3.328e^-4	0.999	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	6479073	X_6479073_SNP [dm3] X_6585040_SNP [dm6]	A	G	3.332e^-4	0.999	UTR_3_PRIME CG34417 INTRON CG34417
3L	5784299	3L_5784299_SNP [dm3] 3L_5791199_SNP [dm6]	C	A	3.334e^-4	0.999	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4879898	2R_4879898_DEL [dm3] 2R_8992393_DEL [dm6]	AATTCGTGTAA...	A	3.340e^-4	0.999	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8997558	3L_8997558_SNP [dm3] 3L_9004458_SNP [dm6]	A	T	3.341e^-4	0.999	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	20263372	3R_20263372_SNP [dm3] 3R_24437650_SNP [dm6]	A	G	3.347e^-4	0.999	INTRON nAChRalpha1	TF binding site BDTNP1_TFBS_hb
3L	2182014	3L_2182014_DEL [dm3] 3L_2182014_DEL [dm6]	AAA	A	3.349e^-4	0.999	INTERGENIC
2L	14696049	2L_14696049_INS [dm3] 2L_14696049_INS [dm6]	T	TTTGCT	3.349e^-4	0.999	INTERGENIC
3L	9136485	3L_9136485_SNP [dm3] 3L_9143385_SNP [dm6]	A	G	3.360e^-4	0.999	INTRON nwk
3L	10455232	3L_10455232_SNP [dm3] 3L_10462132_SNP [dm6]	A	G	3.361e^-4	0.999	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2L	10135003	2L_10135003_SNP [dm3] 2L_10135003_SNP [dm6]	T	C	3.369e^-4	0.999	INTRON CG44153
2L	3928140	2L_3928140_SNP [dm3] 2L_3928140_SNP [dm6]	A	C	3.380e^-4	0.999	INTRON fred	TF binding site mE1_TFBS_bab1
2L	9600761	2L_9600761_SNP [dm3] 2L_9600761_SNP [dm6]	C	A	3.381e^-4	0.999	NON_SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18422772	X_18422772_SNP [dm3] X_18528739_SNP [dm6]	A	C	3.382e^-4	0.999	NON_SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	16327217	3L_16327217_SNP [dm3] 3L_16334117_SNP [dm6]	G	T	3.383e^-4	0.999	DOWNSTREAM CG13056 INTERGENIC
3R	16995057	3R_16995057_SNP [dm3] 3R_21169335_SNP [dm6]	A	T	3.386e^-4	0.999	INTRON SNF4Agamma
2R	19717629	2R_19717629_SNP [dm3] 2R_23830106_SNP [dm6]	T	C	3.387e^-4	0.999	SYNONYMOUS_CODING CG5549
3R	16994954	3R_16994954_SNP [dm3] 3R_21169232_SNP [dm6]	T	C	3.396e^-4	0.999	INTRON SNF4Agamma
3L	13767082	3L_13767082_SNP [dm3] 3L_13773982_SNP [dm6]	A	G	3.397e^-4	0.999	INTRON bru-3
2L	13061788	2L_13061788_SNP [dm3] 2L_13061788_SNP [dm6]	C	T	3.398e^-4	0.999	INTERGENIC
2L	5332452	2L_5332452_SNP [dm3] 2L_5332452_SNP [dm6]	C	T	3.401e^-4	0.999	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17203946	2R_17203946_SNP [dm3] 2R_21316441_SNP [dm6]	A	G	3.407e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3182701	2L_3182701_SNP [dm3] 2L_3182701_SNP [dm6]	T	C	3.415e^-4	0.999	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14527732	X_14527732_SNP [dm3] X_14633699_SNP [dm6]	T	C	3.417e^-4	0.999	INTRON NetA
3L	3927152	3L_3927152_SNP [dm3] 3L_3927152_SNP [dm6]	T	C	3.417e^-4	0.999	INTRON Eip63F-1
3R	18088213	3R_18088213_DEL [dm3] 3R_22262491_DEL [dm6]	TGCTAT	T	3.422e^-4	0.999	INTRON SKIP
2L	3895195	2L_3895195_DEL [dm3] 2L_3895195_DEL [dm6]	TAT	T	3.426e^-4	0.999	INTRON capu	TF binding site mE1_TFBS_kn
2R	11665628	2R_11665628_SNP [dm3] 2R_15778123_SNP [dm6]	A	G	3.431e^-4	0.999	INTRON Zasp52
2R	10087057	2R_10087057_SNP [dm3] 2R_14199552_SNP [dm6]	A	G	3.431e^-4	0.999	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2141965	3L_2141965_SNP [dm3] 3L_2141965_SNP [dm6]	G	A	3.437e^-4	0.999	INTRON zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13061613	2L_13061613_SNP [dm3] 2L_13061613_SNP [dm6]	G	T	3.463e^-4	0.999	INTERGENIC
2L	13061619	2L_13061619_SNP [dm3] 2L_13061619_SNP [dm6]	T	A	3.463e^-4	0.999	INTERGENIC
3L	16230466	3L_16230466_SNP [dm3] 3L_16237366_SNP [dm6]	C	T	3.468e^-4	0.999	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
2R	6832333	2R_6832333_SNP [dm3] 2R_10944828_SNP [dm6]	G	T	3.475e^-4	0.999	INTERGENIC
3L	8641422	3L_8641422_SNP [dm3] 3L_8648322_SNP [dm6]	C	T	3.482e^-4	0.999	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3548748	2L_3548748_SNP [dm3] 2L_3548748_SNP [dm6]	T	A	3.483e^-4	0.999	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6027661	2R_6027661_SNP [dm3] 2R_10140156_SNP [dm6]	C	T	3.484e^-4	0.999	SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467
3L	19502460	3L_19502460_SNP [dm3] 3L_19509360_SNP [dm6]	G	C	3.494e^-4	0.999	INTERGENIC
2R	1838715	2R_1838715_SNP [dm3] 2R_5951210_SNP [dm6]	G	T	3.502e^-4	0.999	INTERGENIC
3L	2182118	3L_2182118_SNP [dm3] 3L_2182118_SNP [dm6]	T	C	3.503e^-4	0.999	INTERGENIC
3L	2182146	3L_2182146_SNP [dm3] 3L_2182146_SNP [dm6]	T	G	3.503e^-4	0.999	INTERGENIC
3L	2182153	3L_2182153_SNP [dm3] 3L_2182153_SNP [dm6]	C	T	3.503e^-4	0.999	INTERGENIC
2L	5332440	2L_5332440_SNP [dm3] 2L_5332440_SNP [dm6]	C	T	3.511e^-4	0.999	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14205680	2R_14205680_INS [dm3] 2R_18318175_INS [dm6]	G	GG	3.515e^-4	0.999	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10062246	3L_10062246_SNP [dm3] 3L_10069146_SNP [dm6]	C	T	3.515e^-4	0.999	INTRON dpr6
X	9600480	X_9600480_SNP [dm3] X_9706447_SNP [dm6]	C	T	3.520e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	13877237	2R_13877237_SNP [dm3] 2R_17989732_SNP [dm6]	A	G	3.531e^-4	0.999	SYNONYMOUS_CODING dpr13
2R	14499088	2R_14499088_SNP [dm3] 2R_18611583_SNP [dm6]	T	G	3.542e^-4	0.999	START_GAINED GEFmeso UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19400594	2R_19400594_SNP [dm3] 2R_23513071_SNP [dm6]	C	G	3.544e^-4	0.999	UPSTREAM CG3906 INTERGENIC
X	20350934	X_20350934_SNP [dm3] X_20479907_SNP [dm6]	C	G	3.552e^-4	0.999	INTRON RhoGAP19D
X	5553092	X_5553092_SNP [dm3] X_5659059_SNP [dm6]	C	T	3.565e^-4	0.999	INTRON CG42265	TF binding site mE1_TFBS_chinmo
3L	11449065	3L_11449065_SNP [dm3] 3L_11455965_SNP [dm6]	A	C	3.575e^-4	0.999	INTERGENIC
2L	5861797	2L_5861797_SNP [dm3] 2L_5861797_SNP [dm6]	A	C	3.581e^-4	0.999	INTRON rau
3L	2507508	3L_2507508_SNP [dm3] 3L_2507508_SNP [dm6]	T	A	3.582e^-4	0.999	UTR_3_PRIME Spn DOWNSTREAM Spn
X	17163363	X_17163363_SNP [dm3] X_17269330_SNP [dm6]	G	T	3.591e^-4	0.999	INTRON f
2R	9366917	2R_9366917_DEL [dm3] 2R_13479412_DEL [dm6]	TAGACTGTTT	T	3.592e^-4	0.999	INTRON arr
3R	9616624	3R_9616624_SNP [dm3] 3R_13790902_SNP [dm6]	A	G	3.597e^-4	0.999	INTERGENIC
X	17150516	X_17150516_SNP [dm3] X_17256483_SNP [dm6]	G	A	3.599e^-4	0.999	INTRON f
X	7453023	X_7453023_SNP [dm3] X_7558990_SNP [dm6]	A	T	3.607e^-4	0.999	INTERGENIC
2L	14030462	2L_14030462_SNP [dm3] 2L_14030462_SNP [dm6]	C	T	3.619e^-4	0.999	NON_SYNONYMOUS_CODING CG18095
3L	10110260	3L_10110260_SNP [dm3] 3L_10117160_SNP [dm6]	T	G	3.620e^-4	0.999	INTRON dpr6
3L	10048273	3L_10048273_SNP [dm3] 3L_10055173_SNP [dm6]	A	G	3.623e^-4	0.999	INTRON dpr6
3L	2400053	3L_2400053_SNP [dm3] 3L_2400053_SNP [dm6]	G	A	3.629e^-4	0.999	UPSTREAM CG45186 INTRON CG45186
X	18162701	X_18162701_SNP [dm3] X_18268668_SNP [dm6]	T	A	3.633e^-4	0.999	INTERGENIC
3L	17106343	3L_17106343_SNP [dm3] 3L_17113243_SNP [dm6]	G	A	3.634e^-4	0.999	INTRON Rbp6	TF binding site mE1_TFBS_cad
2L	14954748	2L_14954748_SNP [dm3] 2L_14954748_SNP [dm6]	G	A	3.641e^-4	0.999	INTRON CG42313
3L	14503837	3L_14503837_SNP [dm3] 3L_14510737_SNP [dm6]	T	C	3.653e^-4	0.999	UPSTREAM bbg INTRON bbg
3R	15809247	3R_15809247_SNP [dm3] 3R_19983525_SNP [dm6]	G	A	3.658e^-4	0.999	INTRON Hs6st
3R	12638094	3R_12638094_SNP [dm3] 3R_16812372_SNP [dm6]	T	C	3.664e^-4	0.999	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	13191253	3R_13191253_SNP [dm3] 3R_17365531_SNP [dm6]	A	G	3.673e^-4	0.999	INTRON beat-IIa
3L	7473293	3L_7473293_SNP [dm3] 3L_7480193_SNP [dm6]	C	T	3.681e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6083647	2R_6083647_SNP [dm3] 2R_10196142_SNP [dm6]	A	C	3.684e^-4	0.999	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2405438	2L_2405438_SNP [dm3] 2L_2405438_SNP [dm6]	A	G	3.686e^-4	0.999	INTRON VGlut
3L	19247949	3L_19247949_DEL [dm3] 3L_19254849_DEL [dm6]	ATTTCATTGGGA...	A	3.691e^-4	0.999	UPSTREAM rept INTRON mRpL21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20266201	3R_20266201_SNP [dm3] 3R_24440479_SNP [dm6]	C	A	3.691e^-4	0.999	DOWNSTREAM CR43455 INTRON nAChRalpha1
3R	16994884	3R_16994884_SNP [dm3] 3R_21169162_SNP [dm6]	C	G	3.692e^-4	0.999	UPSTREAM Snmp1 INTRON SNF4Agamma
3L	16230402	3L_16230402_SNP [dm3] 3L_16237302_SNP [dm6]	A	G	3.693e^-4	0.999	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
3L	14679677	3L_14679677_SNP [dm3] 3L_14686577_SNP [dm6]	C	G	3.699e^-4	0.999	DOWNSTREAM CG5048 INTRON ome
3L	2286120	3L_2286120_SNP [dm3] 3L_2286120_SNP [dm6]	A	G	3.700e^-4	0.999	INTRON MsR2
2R	16808788	2R_16808788_SNP [dm3] 2R_20921283_SNP [dm6]	A	G	3.709e^-4	0.999	INTRON Rx
3L	18925389	3L_18925389_SNP [dm3] 3L_18932289_SNP [dm6]	C	A	3.709e^-4	0.999	INTRON CG32204
3L	10845251	3L_10845251_SNP [dm3] 3L_10852151_SNP [dm6]	A	C	3.709e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18420177	X_18420177_SNP [dm3] X_18526144_SNP [dm6]	T	A	3.725e^-4	0.999	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
3L	7826296	3L_7826296_SNP [dm3] 3L_7833196_SNP [dm6]	C	T	3.737e^-4	0.999	UPSTREAM Pdp1 INTRON Pdp1
2L	1363061	2L_1363061_SNP [dm3] 2L_1363061_SNP [dm6]	G	A	3.738e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9834354	2L_9834354_SNP [dm3] 2L_9834354_SNP [dm6]	G	C	3.739e^-4	0.999	INTRON nAChRalpha6
3L	11572858	3L_11572858_SNP [dm3] 3L_11579758_SNP [dm6]	T	A	3.744e^-4	0.999	UTR_3_PRIME CG43390
3L	13475287	3L_13475287_SNP [dm3] 3L_13482187_SNP [dm6]	A	G	3.750e^-4	0.999	SYNONYMOUS_CODING stv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3143222	X_3143222_SNP [dm3] X_3249189_SNP [dm6]	A	T	3.751e^-4	0.999	SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
2R	14203629	2R_14203629_SNP [dm3] 2R_18316124_SNP [dm6]	G	A	3.752e^-4	0.999	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8662904	2R_8662904_SNP [dm3] 2R_12775399_SNP [dm6]	T	C	3.755e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	10108845	2R_10108845_INS [dm3] 2R_14221340_INS [dm6]	G	GAGTA	3.758e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6669148	3L_6669148_SNP [dm3] 3L_6676048_SNP [dm6]	C	T	3.759e^-4	0.999	INTERGENIC
X	9473860	X_9473860_SNP [dm3] X_9579827_SNP [dm6]	A	T	3.766e^-4	0.999	UTR_5_PRIME CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15808302	3R_15808302_SNP [dm3] 3R_19982580_SNP [dm6]	T	C	3.768e^-4	0.999	INTRON Hs6st
3R	7022188	3R_7022188_SNP [dm3] 3R_11196466_SNP [dm6]	A	G	3.769e^-4	0.999	INTRON CG18577
X	15573735	X_15573735_SNP [dm3] X_15679702_SNP [dm6]	C	A	3.770e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10571033	3L_10571033_SNP [dm3] 3L_10577933_SNP [dm6]	T	C	3.776e^-4	0.999	INTRON A2bp1
3L	2170048	3L_2170048_SNP [dm3] 3L_2170048_SNP [dm6]	A	G	3.777e^-4	0.999	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	10624255	2R_10624255_SNP [dm3] 2R_14736750_SNP [dm6]	G	A	3.777e^-4	0.999	DOWNSTREAM CR43428 INTERGENIC
3L	1612286	3L_1612286_SNP [dm3] 3L_1612286_SNP [dm6]	T	C	3.795e^-4	0.999	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16243879	3L_16243879_SNP [dm3] 3L_16250779_SNP [dm6]	G	A	3.800e^-4	0.999	UTR_3_PRIME CG13055 DOWNSTREAM CG13055
3R	2141660	3R_2141660_SNP [dm3] 3R_6315938_SNP [dm6]	C	A	3.800e^-4	0.999	NON_SYNONYMOUS_CODING Osi17	TF binding site BDTNP1_TFBS_sna
2R	4927280	2R_4927280_SNP [dm3] 2R_9039775_SNP [dm6]	T	C	3.804e^-4	0.999	UTR_3_PRIME Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	14915021	3R_14915021_SNP [dm3] 3R_19089299_SNP [dm6]	C	G	3.806e^-4	0.999	INTRON cdi
X	20138873	X_20138873_SNP [dm3] X_20267847_SNP [dm6]	G	A	3.813e^-4	0.999	UTR_3_PRIME Inx6	TF binding site mE1_TFBS_HSA
X	20138883	X_20138883_SNP [dm3] X_20267857_SNP [dm6]	A	T	3.813e^-4	0.999	UTR_3_PRIME Inx6	TF binding site mE1_TFBS_HSA
2R	15570064	2R_15570064_SNP [dm3] 2R_19682559_SNP [dm6]	C	T	3.814e^-4	0.999	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3895213	2L_3895213_INS [dm3] 2L_3895213_INS [dm6]	A	ATTACTATAATTATGACGAG...	3.818e^-4	0.999	INTRON capu	TF binding site mE1_TFBS_kn
3L	12557939	3L_12557939_SNP [dm3] 3L_12564839_SNP [dm6]	A	T	3.826e^-4	0.999	INTRON sowah
X	17902849	X_17902849_SNP [dm3] X_18008816_SNP [dm6]	A	G	3.830e^-4	0.999	INTRON Sh
X	18395151	X_18395151_SNP [dm3] X_18501118_SNP [dm6]	T	A	3.850e^-4	0.999	UTR_3_PRIME Rad51D DOWNSTREAM Wnt5
3R	25775958	3R_25775958_SNP [dm3] 3R_29950236_SNP [dm6]	G	A	3.852e^-4	0.999	DOWNSTREAM TkR99D INTERGENIC
3R	11840070	3R_11840070_SNP [dm3] 3R_16014348_SNP [dm6]	G	T	3.858e^-4	0.999	INTRON GATAe
3L	16115620	3L_16115620_SNP [dm3] 3L_16122520_SNP [dm6]	T	C	3.863e^-4	0.999	SPLICE_SITE_REGION CG12272 DOWNSTREAM Taf4 INTRON CG12272	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	6650285	3L_6650285_INS [dm3] 3L_6657185_INS [dm6]	A	AA	3.882e^-4	0.999	INTERGENIC
2L	14090759	2L_14090759_SNP [dm3] 2L_14090759_SNP [dm6]	G	T	3.884e^-4	0.999	UTR_3_PRIME nAChRalpha5
3L	5853360	3L_5853360_SNP [dm3] 3L_5860260_SNP [dm6]	G	A	3.900e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	21225037	X_21225037_SNP [dm3] X_21354010_SNP [dm6]	C	A	3.903e^-4	0.999	INTRON sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10827107	2L_10827107_SNP [dm3] 2L_10827107_SNP [dm6]	T	A	3.907e^-4	0.999	UPSTREAM Nos INTRON Nos
X	3809413	X_3809413_SNP [dm3] X_3915380_SNP [dm6]	C	A	3.909e^-4	0.999	INTRON CG42541
3L	16242221	3L_16242221_SNP [dm3] 3L_16249121_SNP [dm6]	T	A	3.920e^-4	0.999	DOWNSTREAM CG13055 INTERGENIC
3L	2182051	3L_2182051_SNP [dm3] 3L_2182051_SNP [dm6]	A	T	3.924e^-4	0.999	INTERGENIC
2L	8117971	2L_8117971_SNP [dm3] 2L_8117971_SNP [dm6]	C	T	3.924e^-4	0.999	SYNONYMOUS_CODING mon2
3R	15318252	3R_15318252_DEL [dm3] 3R_19492530_DEL [dm6]	GTACGTTTAAGGTTTCTTTG...	G	3.931e^-4	0.999	INTRON Dys
3R	15318356	3R_15318356_INS [dm3] 3R_19492634_INS [dm6]	A	AGCTA	3.931e^-4	0.999	INTRON Dys
3R	15318315	3R_15318315_SNP [dm3] 3R_19492593_SNP [dm6]	C	G	3.938e^-4	0.999	INTRON Dys
2R	16663762	2R_16663762_SNP [dm3] 2R_20776257_SNP [dm6]	T	A	3.948e^-4	0.999	NON_SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
X	15183258	X_15183258_SNP [dm3] X_15289225_SNP [dm6]	T	G	3.949e^-4	0.999	UPSTREAM CR44663 INTERGENIC
3L	18061699	3L_18061699_SNP [dm3] 3L_18068599_SNP [dm6]	G	T	3.955e^-4	0.999	DOWNSTREAM CG44006 INTERGENIC
2L	7227380	2L_7227380_SNP [dm3] 2L_7227380_SNP [dm6]	T	C	3.965e^-4	0.999	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_inv
3R	20374343	3R_20374343_SNP [dm3] 3R_24548621_SNP [dm6]	C	T	3.973e^-4	0.999	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9605788	2L_9605788_SNP [dm3] 2L_9605788_SNP [dm6]	C	A	3.974e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs
2R	16872867	2R_16872867_SNP [dm3] 2R_20985362_SNP [dm6]	G	C	3.978e^-4	0.999	NON_SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15805854	3L_15805854_SNP [dm3] 3L_15812754_SNP [dm6]	G	T	3.984e^-4	0.999	UTR_3_PRIME fwe INTRON fwe
2R	8979436	2R_8979436_SNP [dm3] 2R_13091931_SNP [dm6]	T	A	4.003e^-4	0.999	INTERGENIC
3L	8101914	3L_8101914_SNP [dm3] 3L_8108814_SNP [dm6]	C	T	4.007e^-4	0.999	UTR_3_PRIME Ect4 UPSTREAM fan DOWNSTREAM Ect4	TF binding site mE1_TFBS_bab1
X	20224332	X_20224332_SNP [dm3] X_20353305_SNP [dm6]	G	A	4.016e^-4	0.999	INTERGENIC
X	18463804	X_18463804_DEL [dm3] X_18569771_DEL [dm6]	TAGT	T	4.023e^-4	0.999	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	11645700	2L_11645700_SNP [dm3] 2L_11645700_SNP [dm6]	T	C	4.032e^-4	0.999	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
3L	7467668	3L_7467668_SNP [dm3] 3L_7474568_SNP [dm6]	A	G	4.047e^-4	0.999	INTERGENIC
3L	9723817	3L_9723817_SNP [dm3] 3L_9730717_SNP [dm6]	A	C	4.055e^-4	0.999	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	6265008	X_6265008_SNP [dm3] X_6370975_SNP [dm6]	T	G	4.068e^-4	0.999	DOWNSTREAM PpV & 1 other EXON CR44816
3L	18915833	3L_18915833_SNP [dm3] 3L_18922733_SNP [dm6]	T	C	4.082e^-4	0.999	UTR_3_PRIME CG32204 UPSTREAM CG3819
3R	7438133	3R_7438133_SNP [dm3] 3R_11612411_SNP [dm6]	G	T	4.090e^-4	0.999	INTRON Jupiter
3L	13643825	3L_13643825_SNP [dm3] 3L_13650725_SNP [dm6]	A	G	4.097e^-4	0.999	INTRON bru-3
X	17015577	X_17015577_SNP [dm3] X_17121544_SNP [dm6]	C	T	4.104e^-4	0.999	INTRON CG5004
X	18873305	X_18873305_SNP [dm3] X_18979272_SNP [dm6]	A	T	4.139e^-4	0.999	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18664276	3R_18664276_SNP [dm3] 3R_22838554_SNP [dm6]	C	T	4.151e^-4	0.999	INTERGENIC
3R	7427275	3R_7427275_SNP [dm3] 3R_11601553_SNP [dm6]	G	T	4.153e^-4	0.999	INTRON Jupiter	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19432806	3L_19432806_SNP [dm3] 3L_19439706_SNP [dm6]	G	C	4.155e^-4	0.999	DOWNSTREAM CR45732 INTERGENIC
X	18463782	X_18463782_SNP [dm3] X_18569749_SNP [dm6]	G	C	4.155e^-4	0.999	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	2083767	3L_2083767_SNP [dm3] 3L_2083767_SNP [dm6]	G	A	4.170e^-4	0.999	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	158894	2L_158894_SNP [dm3] 2L_158894_SNP [dm6]	G	A	4.174e^-4	0.999	UPSTREAM spen & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	23137784	3L_23137784_SNP [dm3] 3L_23144684_SNP [dm6]	T	G	4.176e^-4	0.999	INTERGENIC
2R	15146348	2R_15146348_SNP [dm3] 2R_19258843_SNP [dm6]	T	C	4.183e^-4	0.999	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15146352	2R_15146352_SNP [dm3] 2R_19258847_SNP [dm6]	A	T	4.183e^-4	0.999	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6996613	3R_6996613_SNP [dm3] 3R_11170891_SNP [dm6]	G	A	4.200e^-4	0.999	UTR_3_PRIME Ugt35a UPSTREAM Ugt35b
2L	9601864	2L_9601864_SNP [dm3] 2L_9601864_SNP [dm6]	A	G	4.200e^-4	0.999	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1362878	2L_1362878_SNP [dm3] 2L_1362878_SNP [dm6]	G	T	4.201e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
X	14523298	X_14523298_DEL [dm3] X_14629265_DEL [dm6]	AA	A	4.207e^-4	0.999	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13191222	3R_13191222_SNP [dm3] 3R_17365500_SNP [dm6]	C	T	4.208e^-4	0.999	INTRON beat-IIa
3L	12557917	3L_12557917_SNP [dm3] 3L_12564817_SNP [dm6]	T	A	4.212e^-4	0.999	INTRON sowah
3R	6569427	3R_6569427_SNP [dm3] 3R_10743705_SNP [dm6]	T	G	4.215e^-4	0.999	INTRON TkR86C
3L	2645091	3L_2645091_SNP [dm3] 3L_2645091_SNP [dm6]	T	G	4.245e^-4	0.999	UPSTREAM CG1143 INTERGENIC
3R	15315147	3R_15315147_SNP [dm3] 3R_19489425_SNP [dm6]	G	C	4.252e^-4	0.999	DOWNSTREAM CG15025 INTRON Dys
X	17166495	X_17166495_SNP [dm3] X_17272462_SNP [dm6]	A	C	4.258e^-4	0.999	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16609267	2L_16609267_SNP [dm3] 2L_16609267_SNP [dm6]	A	G	4.270e^-4	0.999	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2R	10574702	2R_10574702_SNP [dm3] 2R_14687197_SNP [dm6]	T	A	4.271e^-4	0.999	INTRON mspo
X	18422757	X_18422757_SNP [dm3] X_18528724_SNP [dm6]	G	A	4.280e^-4	0.999	NON_SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	4705470	3R_4705470_INS [dm3] 3R_8879748_INS [dm6]	T	TT	4.311e^-4	0.999	INTRON pyd
X	18814039	X_18814039_SNP [dm3] X_18920006_SNP [dm6]	A	G	4.326e^-4	0.999	INTERGENIC
3L	22565750	3L_22565750_SNP [dm3] 3L_22572650_SNP [dm6]	A	C	4.336e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7473155	3L_7473155_DEL [dm3] 3L_7480055_DEL [dm6]	CAGTATCT	C	4.340e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11641064	2R_11641064_SNP [dm3] 2R_15753559_SNP [dm6]	T	A	4.341e^-4	0.999	INTRON CG30089
3L	15709251	3L_15709251_SNP [dm3] 3L_15716151_SNP [dm6]	A	G	4.353e^-4	0.999	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	18924548	3L_18924548_SNP [dm3] 3L_18931448_SNP [dm6]	A	G	4.357e^-4	0.999	INTRON CG32204	TF binding site mE1_TFBS_inv
3L	10118560	3L_10118560_SNP [dm3] 3L_10125460_SNP [dm6]	A	G	4.361e^-4	0.999	INTRON dpr6
X	18889587	X_18889587_SNP [dm3] X_18995554_SNP [dm6]	C	T	4.370e^-4	0.999	INTRON CG43759
3L	18929057	3L_18929057_SNP [dm3] 3L_18935957_SNP [dm6]	C	T	4.395e^-4	0.999	INTRON CG32204
3R	9260935	3R_9260935_SNP [dm3] 3R_13435213_SNP [dm6]	C	A	4.416e^-4	0.999	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
X	17891339	X_17891339_SNP [dm3] X_17997306_SNP [dm6]	A	T	4.416e^-4	0.999	INTRON Sh
3L	14107767	3L_14107767_SNP [dm3] 3L_14114667_SNP [dm6]	T	C	4.418e^-4	0.999	INTRON Sox21b
3R	15648309	3R_15648309_SNP [dm3] 3R_19822587_SNP [dm6]	C	A	4.419e^-4	0.999	INTRON bnl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19420952	3L_19420952_SNP [dm3] 3L_19427852_SNP [dm6]	T	C	4.427e^-4	0.999	INTERGENIC
3R	11785172	3R_11785172_SNP [dm3] 3R_15959450_SNP [dm6]	A	G	4.436e^-4	0.999	SYNONYMOUS_CODING Sap47 UTR_3_PRIME Sap47
3L	12377139	3L_12377139_SNP [dm3] 3L_12384039_SNP [dm6]	C	A	4.438e^-4	0.999	INTRON Ncc69
2L	9843594	2L_9843594_SNP [dm3] 2L_9843594_SNP [dm6]	G	A	4.450e^-4	0.999	INTRON nAChRalpha6
3L	3729820	3L_3729820_SNP [dm3] 3L_3729820_SNP [dm6]	T	C	4.450e^-4	0.999	INTRON CG32264
3L	1802936	3L_1802936_SNP [dm3] 3L_1802936_SNP [dm6]	A	G	4.461e^-4	0.999	UPSTREAM CG42676 & 1 other DOWNSTREAM Patj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13061609	2L_13061609_SNP [dm3] 2L_13061609_SNP [dm6]	C	T	4.468e^-4	0.999	INTERGENIC
3L	8997446	3L_8997446_SNP [dm3] 3L_9004346_SNP [dm6]	T	C	4.474e^-4	0.999	UPSTREAM Doc3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	21432594	3L_21432594_SNP [dm3] 3L_21439494_SNP [dm6]	G	A	4.485e^-4	0.999	NON_SYNONYMOUS_CODING CG5664 UTR_3_PRIME CG5664 DOWNSTREAM Aef1	TF binding site mE1_TFBS_sens
2R	9362546	2R_9362546_SNP [dm3] 2R_13475041_SNP [dm6]	T	C	4.494e^-4	0.999	INTRON arr
3L	7475787	3L_7475787_SNP [dm3] 3L_7482687_SNP [dm6]	C	A	4.497e^-4	0.999	INTERGENIC
3R	6996688	3R_6996688_SNP [dm3] 3R_11170966_SNP [dm6]	G	T	4.503e^-4	0.999	NON_SYNONYMOUS_CODING Ugt35a UPSTREAM Ugt35b
3R	5895628	3R_5895628_SNP [dm3] 3R_10069906_SNP [dm6]	C	T	4.504e^-4	0.999	INTERGENIC
2R	6862655	2R_6862655_SNP [dm3] 2R_10975150_SNP [dm6]	G	C	4.506e^-4	0.999	INTERGENIC
3R	6344147	3R_6344147_SNP [dm3] 3R_10518425_SNP [dm6]	G	T	4.516e^-4	0.999	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7473215	3L_7473215_SNP [dm3] 3L_7480115_SNP [dm6]	T	C	4.522e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9373955	3L_9373955_SNP [dm3] 3L_9380855_SNP [dm6]	T	G	4.527e^-4	0.999	EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17392874	3R_17392874_SNP [dm3] 3R_21567152_SNP [dm6]	C	T	4.534e^-4	0.999	DOWNSTREAM CG15498 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12967289	3R_12967289_SNP [dm3] 3R_17141567_SNP [dm6]	G	A	4.537e^-4	0.999	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18089289	3L_18089289_SNP [dm3] 3L_18096189_SNP [dm6]	T	A	4.541e^-4	0.999	INTRON CG13698
3L	18089291	3L_18089291_SNP [dm3] 3L_18096191_SNP [dm6]	A	T	4.541e^-4	0.999	INTRON CG13698
3L	10799035	3L_10799035_SNP [dm3] 3L_10805935_SNP [dm6]	C	T	4.542e^-4	0.999	UPSTREAM CR44347 INTERGENIC
2L	1189487	2L_1189487_SNP [dm3] 2L_1189487_SNP [dm6]	T	C	4.547e^-4	0.999	INTRON CG5001
3L	16241848	3L_16241848_SNP [dm3] 3L_16248748_SNP [dm6]	T	A	4.554e^-4	0.999	DOWNSTREAM CG13055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11575431	3L_11575431_SNP [dm3] 3L_11582331_SNP [dm6]	A	C	4.556e^-4	0.999	UPSTREAM CG33269 DOWNSTREAM CG32086 INTERGENIC
2R	10108816	2R_10108816_SNP [dm3] 2R_14221311_SNP [dm6]	A	C	4.568e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10108882	2R_10108882_DEL [dm3] 2R_14221377_DEL [dm6]	TGCATT	T	4.568e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14087933	2L_14087933_SNP [dm3] 2L_14087933_SNP [dm6]	G	A	4.575e^-4	0.999	INTRON nAChRalpha5
X	16162266	X_16162266_SNP [dm3] X_16268233_SNP [dm6]	A	G	4.579e^-4	0.999	INTRON kat80
2L	664492	2L_664492_SNP [dm3] 2L_664492_SNP [dm6]	A	T	4.585e^-4	0.999	INTRON ds
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	4.601e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4792689	3L_4792689_SNP [dm3] 3L_4792689_SNP [dm6]	G	C	4.609e^-4	0.999	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	5018242	2L_5018242_SNP [dm3] 2L_5018242_SNP [dm6]	C	T	4.616e^-4	0.999	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10945421	3R_10945421_SNP [dm3] 3R_15119699_SNP [dm6]	T	C	4.622e^-4	0.999	INTRON CG42788
2L	12947518	2L_12947518_SNP [dm3] 2L_12947518_SNP [dm6]	C	T	4.637e^-4	0.999	INTERGENIC
3L	2438837	3L_2438837_SNP [dm3] 3L_2438837_SNP [dm6]	G	T	4.637e^-4	0.999	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15242360	2R_15242360_SNP [dm3] 2R_19354855_SNP [dm6]	G	T	4.639e^-4	0.999	INTRON Rgk1
X	766657	X_766657_SNP [dm3] X_872624_SNP [dm6]	C	T	4.653e^-4	0.999	INTRON CG43867
3L	22965755	3L_22965755_SNP [dm3] 3L_22972655_SNP [dm6]	T	C	4.655e^-4	0.999	INTERGENIC
2L	625978	2L_625978_SNP [dm3] 2L_625978_SNP [dm6]	C	A	4.663e^-4	0.999	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
X	16609551	X_16609551_DEL [dm3] X_16715518_DEL [dm6]	TAGCTAAT	T	4.672e^-4	0.999	INTRON CG34325
X	7767688	X_7767688_SNP [dm3] X_7873655_SNP [dm6]	T	C	4.679e^-4	0.999	UPSTREAM dec-1 & 1 other DOWNSTREAM CR43615 INTERGENIC
2R	16808769	2R_16808769_SNP [dm3] 2R_20921264_SNP [dm6]	G	T	4.693e^-4	0.999	INTRON Rx
3L	21585737	3L_21585737_SNP [dm3] 3L_21592637_SNP [dm6]	A	G	4.709e^-4	0.999	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10621681	2L_10621681_INS [dm3] 2L_10621681_INS [dm6]	T	TT	4.718e^-4	0.999	INTRON Trim9
X	3096689	X_3096689_SNP [dm3] X_3202656_SNP [dm6]	A	G	4.725e^-4	0.999	INTRON dnc
3R	7337554	3R_7337554_SNP [dm3] 3R_11511832_SNP [dm6]	T	C	4.730e^-4	0.999	INTERGENIC
3L	9390388	3L_9390388_SNP [dm3] 3L_9397288_SNP [dm6]	G	T	4.734e^-4	0.999	INTRON CG4080
2R	13595185	2R_13595185_SNP [dm3] 2R_17707680_SNP [dm6]	T	A	4.739e^-4	0.999	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14244503	2L_14244503_SNP [dm3] 2L_14244503_SNP [dm6]	G	A	4.746e^-4	0.999	INTERGENIC
2L	3237416	2L_3237416_SNP [dm3] 2L_3237416_SNP [dm6]	T	A	4.746e^-4	0.999	INTERGENIC
3L	2607230	3L_2607230_SNP [dm3] 3L_2607230_SNP [dm6]	C	G	4.752e^-4	0.999	INTRON Pxn
2R	10510545	2R_10510545_SNP [dm3] 2R_14623040_SNP [dm6]	A	T	4.756e^-4	0.999	UPSTREAM snoRNA:Me18S-A1061 & 4 others DOWNSTREAM snoRNA:Me28S-C3227a & 3 others INTRON Uhg5	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	4688512	X_4688512_SNP [dm3] X_4794479_SNP [dm6]	A	C	4.764e^-4	0.999	INTERGENIC
X	12017248	X_12017248_SNP [dm3] X_12123215_SNP [dm6]	T	A	4.764e^-4	0.999	INTRON Ten-a
X	17015796	X_17015796_INS [dm3] X_17121763_INS [dm6]	T	TT	4.775e^-4	0.999	INTRON CG5004
3L	7473242	3L_7473242_SNP [dm3] 3L_7480142_SNP [dm6]	A	T	4.788e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11028734	3R_11028734_SNP [dm3] 3R_15203012_SNP [dm6]	T	C	4.788e^-4	0.999	UTR_3_PRIME CG42542 DOWNSTREAM Spn88Ea & 1 other
3R	11028764	3R_11028764_SNP [dm3] 3R_15203042_SNP [dm6]	T	A	4.788e^-4	0.999	UTR_3_PRIME CG42542 DOWNSTREAM Spn88Ea & 1 other
3L	13300630	3L_13300630_SNP [dm3] 3L_13307530_SNP [dm6]	G	C	4.789e^-4	0.999	INTERGENIC
3L	2402048	3L_2402048_SNP [dm3] 3L_2402048_SNP [dm6]	C	A	4.796e^-4	0.999	INTRON CG45186
3L	3142275	3L_3142275_SNP [dm3] 3L_3142275_SNP [dm6]	T	A	4.800e^-4	0.999	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15283101	2L_15283101_SNP [dm3] 2L_15283101_SNP [dm6]	A	T	4.801e^-4	0.999	INTERGENIC
3R	20374369	3R_20374369_DEL [dm3] 3R_24548647_DEL [dm6]	TA	T	4.807e^-4	0.999	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17710557	2R_17710557_SNP [dm3] 2R_21823052_SNP [dm6]	G	A	4.810e^-4	0.999	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19687659	2R_19687659_SNP [dm3] 2R_23800136_SNP [dm6]	A	G	4.811e^-4	0.999	INTERGENIC
X	14630848	X_14630848_SNP [dm3] X_14736815_SNP [dm6]	A	G	4.827e^-4	0.999	INTRON NetB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2352231	3L_2352231_SNP [dm3] 3L_2352231_SNP [dm6]	C	A	4.827e^-4	0.999	INTERGENIC
2R	19687656	2R_19687656_SNP [dm3] 2R_23800133_SNP [dm6]	C	A	4.829e^-4	0.999	INTERGENIC
2L	3928192	2L_3928192_SNP [dm3] 2L_3928192_SNP [dm6]	C	A	4.834e^-4	0.999	INTRON fred	TF binding site mE1_TFBS_bab1
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	4.842e^-4	0.999	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9601895	2L_9601895_DEL [dm3] 2L_9601895_DEL [dm6]	ACATA	A	4.861e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11904160	X_11904160_SNP [dm3] X_12010127_SNP [dm6]	A	G	4.862e^-4	0.999	SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
3L	7473282	3L_7473282_SNP [dm3] 3L_7480182_SNP [dm6]	C	T	4.867e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8718946	2R_8718946_SNP [dm3] 2R_12831441_SNP [dm6]	C	G	4.868e^-4	0.999	INTERGENIC
3L	7901973	3L_7901973_SNP [dm3] 3L_7908873_SNP [dm6]	T	G	4.869e^-4	0.999	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	12807164	3L_12807164_SNP [dm3] 3L_12814064_SNP [dm6]	G	T	4.875e^-4	0.999	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807165	3L_12807165_SNP [dm3] 3L_12814065_SNP [dm6]	G	T	4.875e^-4	0.999	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9471142	2L_9471142_SNP [dm3] 2L_9471142_SNP [dm6]	C	G	4.880e^-4	0.999	DOWNSTREAM CR43769 INTERGENIC
X	18873307	X_18873307_SNP [dm3] X_18979274_SNP [dm6]	A	G	4.883e^-4	0.999	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22140522	3R_22140522_SNP [dm3] 3R_26314800_SNP [dm6]	G	T	4.890e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10527990	2R_10527990_SNP [dm3] 2R_14640485_SNP [dm6]	G	T	4.892e^-4	0.999	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14482170	2L_14482170_SNP [dm3] 2L_14482170_SNP [dm6]	A	C	4.900e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19662611	2R_19662611_SNP [dm3] 2R_23775088_SNP [dm6]	C	T	4.922e^-4	0.999	INTRON CG9850
3L	9046970	3L_9046970_SNP [dm3] 3L_9053870_SNP [dm6]	C	T	4.937e^-4	0.999	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6278975	2L_6278975_SNP [dm3] 2L_6278975_SNP [dm6]	T	C	4.943e^-4	0.999	INTRON Ddr
3L	2782499	3L_2782499_SNP [dm3] 3L_2782499_SNP [dm6]	T	C	4.946e^-4	0.999	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35 INTRON pgant6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	16745986	X_16745986_SNP [dm3] X_16851953_SNP [dm6]	C	G	4.946e^-4	0.999	INTRON CG13003
3L	5407736	3L_5407736_SNP [dm3] 3L_5414636_SNP [dm6]	G	A	4.955e^-4	0.999	INTERGENIC
3L	18010386	3L_18010386_SNP [dm3] 3L_18017286_SNP [dm6]	T	G	4.972e^-4	0.999	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	6970761	3R_6970761_SNP [dm3] 3R_11145039_SNP [dm6]	A	T	4.986e^-4	0.999	INTRON CheA86a
3R	21398148	3R_21398148_SNP [dm3] 3R_25572426_SNP [dm6]	T	C	4.987e^-4	0.999	INTRON msi
2L	14968283	2L_14968283_SNP [dm3] 2L_14968283_SNP [dm6]	A	G	4.990e^-4	0.999	INTRON CG42313
2R	10585868	2R_10585868_SNP [dm3] 2R_14698363_SNP [dm6]	G	A	4.996e^-4	0.999	INTRON mspo
3L	7470171	3L_7470171_SNP [dm3] 3L_7477071_SNP [dm6]	C	T	5.009e^-4	0.999	DOWNSTREAM CG43292 INTERGENIC
3L	18857058	3L_18857058_SNP [dm3] 3L_18863958_SNP [dm6]	A	G	5.010e^-4	0.999	UPSTREAM CG6865 INTRON CG6865
3R	7187146	3R_7187146_SNP [dm3] 3R_11361424_SNP [dm6]	C	T	5.020e^-4	0.999	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17557508	2R_17557508_SNP [dm3] 2R_21670003_SNP [dm6]	C	A	5.024e^-4	0.999	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6284593	2R_6284593_SNP [dm3] 2R_10397088_SNP [dm6]	A	G	5.026e^-4	0.999	INTRON CG42732
X	20889429	X_20889429_SNP [dm3] X_21018402_SNP [dm6]	A	G	5.027e^-4	0.999	INTERGENIC
2L	15608594	2L_15608594_SNP [dm3] 2L_15608594_SNP [dm6]	T	A	5.030e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18554340	2R_18554340_SNP [dm3] 2R_22666835_SNP [dm6]	C	T	5.032e^-4	0.999	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC
2R	11796012	2R_11796012_SNP [dm3] 2R_15908507_SNP [dm6]	T	G	5.033e^-4	0.999	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15807056	3R_15807056_SNP [dm3] 3R_19981334_SNP [dm6]	T	C	5.038e^-4	0.999	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15050115	2R_15050115_SNP [dm3] 2R_19162610_SNP [dm6]	A	C	5.041e^-4	0.999	UTR_3_PRIME ena DOWNSTREAM ena
3R	16820241	3R_16820241_SNP [dm3] 3R_20994519_SNP [dm6]	G	C	5.041e^-4	0.999	INTRON Calx	TF binding site mE1_TFBS_cad
3L	1558641	3L_1558641_SNP [dm3] 3L_1558641_SNP [dm6]	T	A	5.044e^-4	0.999	UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16874884	2R_16874884_SNP [dm3] 2R_20987379_SNP [dm6]	A	G	5.053e^-4	0.999	SYNONYMOUS_CODING CG3216 UPSTREAM CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14915511	3L_14915511_SNP [dm3] 3L_14922411_SNP [dm6]	A	T	5.056e^-4	0.999	INTRON DCX-EMAP
3L	15616075	3L_15616075_SNP [dm3] 3L_15622975_SNP [dm6]	C	T	5.061e^-4	0.999	SYNONYMOUS_CODING CG7372 INTRON comm3
3L	16411613	3L_16411613_SNP [dm3] 3L_16418513_SNP [dm6]	G	A	5.070e^-4	0.999	SYNONYMOUS_CODING Aats-tyr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9086666	2L_9086666_SNP [dm3] 2L_9086666_SNP [dm6]	C	T	5.073e^-4	0.999	SYNONYMOUS_CODING Toll-4
2L	9846468	2L_9846468_SNP [dm3] 2L_9846468_SNP [dm6]	T	C	5.075e^-4	0.999	INTRON nAChRalpha6
2R	10170036	2R_10170036_SNP [dm3] 2R_14282531_SNP [dm6]	G	C	5.087e^-4	0.999	INTRON Ih
X	14566620	X_14566620_SNP [dm3] X_14672587_SNP [dm6]	T	A	5.089e^-4	0.999	INTERGENIC
X	17173391	X_17173391_SNP [dm3] X_17279358_SNP [dm6]	A	C	5.091e^-4	0.999	INTRON f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5474029	2L_5474029_SNP [dm3] 2L_5474029_SNP [dm6]	A	G	5.103e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9601871	2L_9601871_SNP [dm3] 2L_9601871_SNP [dm6]	T	A	5.104e^-4	0.999	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17115051	2L_17115051_SNP [dm3] 2L_17115051_SNP [dm6]	G	A	5.104e^-4	0.999	INTERGENIC
3L	16284116	3L_16284116_INS [dm3] 3L_16291016_INS [dm6]	G	GTTGCGTCGCCCGCA...	5.105e^-4	0.999	UPSTREAM CG13045 INTERGENIC
3L	13722035	3L_13722035_SNP [dm3] 3L_13728935_SNP [dm6]	G	A	5.120e^-4	0.999	INTRON bru-3
3L	3772201	3L_3772201_SNP [dm3] 3L_3772201_SNP [dm6]	G	T	5.123e^-4	0.999	INTRON CG32264
3L	1424730	3L_1424730_SNP [dm3] 3L_1424730_SNP [dm6]	A	C	5.141e^-4	0.999	INTRON Ptp61F
3L	12940148	3L_12940148_SNP [dm3] 3L_12947048_SNP [dm6]	C	T	5.142e^-4	0.999	INTERGENIC
2L	1185823	2L_1185823_SNP [dm3] 2L_1185823_SNP [dm6]	G	T	5.148e^-4	0.999	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18565818	3L_18565818_SNP [dm3] 3L_18572718_SNP [dm6]	G	A	5.148e^-4	0.999	INTRON AstC-R1
3L	18565823	3L_18565823_SNP [dm3] 3L_18572723_SNP [dm6]	T	C	5.148e^-4	0.999	INTRON AstC-R1
3L	1684394	3L_1684394_SNP [dm3] 3L_1684394_SNP [dm6]	A	G	5.151e^-4	0.999	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	1297947	3L_1297947_SNP [dm3] 3L_1297947_SNP [dm6]	G	A	5.163e^-4	0.999	SYNONYMOUS_CODING Rabex-5 UPSTREAM scf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21943154	3L_21943154_SNP [dm3] 3L_21950054_SNP [dm6]	C	G	5.176e^-4	0.999	UTR_5_PRIME CG7448 DOWNSTREAM CG14562
3L	21948528	3L_21948528_SNP [dm3] 3L_21955428_SNP [dm6]	G	A	5.176e^-4	0.999	NON_SYNONYMOUS_CODING CG7458	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21949642	3L_21949642_SNP [dm3] 3L_21956542_SNP [dm6]	C	T	5.176e^-4	0.999	SPLICE_SITE_REGION CG7458 INTRON CG7458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6832588	2R_6832588_SNP [dm3] 2R_10945083_SNP [dm6]	T	C	5.209e^-4	0.999	INTERGENIC
X	5903420	X_5903420_SNP [dm3] X_6009387_SNP [dm6]	C	A	5.210e^-4	0.999	INTRON mab-21
X	17015599	X_17015599_DEL [dm3] X_17121566_DEL [dm6]	AATATATCA	A	5.216e^-4	0.999	INTRON CG5004
2R	4926503	2R_4926503_SNP [dm3] 2R_9038998_SNP [dm6]	A	C	5.226e^-4	0.999	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10946646	3R_10946646_INS [dm3] 3R_15120924_INS [dm6]	T	TGGT	5.227e^-4	0.999	INTRON CG42788
2R	4926522	2R_4926522_SNP [dm3] 2R_9039017_SNP [dm6]	C	T	5.231e^-4	0.999	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12662884	3L_12662884_SNP [dm3] 3L_12669784_SNP [dm6]	A	T	5.232e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14040574	2R_14040574_SNP [dm3] 2R_18153069_SNP [dm6]	G	A	5.237e^-4	0.999	SYNONYMOUS_CODING adp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20619954	2L_20619954_SNP [dm3] 2L_20619954_SNP [dm6]	A	G	5.238e^-4	0.999	INTRON CR44909
3R	7025788	3R_7025788_SNP [dm3] 3R_11200066_SNP [dm6]	C	A	5.238e^-4	0.999	UPSTREAM cu INTRON cu	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18098496	3L_18098496_SNP [dm3] 3L_18105396_SNP [dm6]	C	T	5.251e^-4	0.999	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17265921	3L_17265921_SNP [dm3] 3L_17272821_SNP [dm6]	G	C	5.261e^-4	0.999	INTERGENIC
2R	17202426	2R_17202426_SNP [dm3] 2R_21314921_SNP [dm6]	T	C	5.261e^-4	0.999	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21761261	3L_21761261_DEL [dm3] 3L_21768161_DEL [dm6]	CG	C	5.262e^-4	0.999	INTRON Syn1 & 1 other
2L	10434168	2L_10434168_SNP [dm3] 2L_10434168_SNP [dm6]	T	C	5.273e^-4	0.999	SYNONYMOUS_CODING CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10434192	2L_10434192_SNP [dm3] 2L_10434192_SNP [dm6]	T	C	5.273e^-4	0.999	SYNONYMOUS_CODING CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13705188	3L_13705188_SNP [dm3] 3L_13712088_SNP [dm6]	T	C	5.282e^-4	0.999	INTRON bru-3
3R	13822426	3R_13822426_SNP [dm3] 3R_17996704_SNP [dm6]	T	G	5.286e^-4	0.999	INTRON cpo
3R	22229227	3R_22229227_SNP [dm3] 3R_26403505_SNP [dm6]	A	G	5.288e^-4	0.999	INTRON ppk15
2L	8989871	2L_8989871_SNP [dm3] 2L_8989871_SNP [dm6]	C	T	5.297e^-4	0.999	UPSTREAM rost INTERGENIC
2R	18859191	2R_18859191_SNP [dm3] 2R_22971668_SNP [dm6]	T	A	5.302e^-4	0.999	INTERGENIC
2L	9335726	2L_9335726_SNP [dm3] 2L_9335726_SNP [dm6]	G	T	5.303e^-4	0.999	INTRON Eaat1
3L	22976442	3L_22976442_SNP [dm3] 3L_22983342_SNP [dm6]	T	A	5.309e^-4	0.999	INTERGENIC	transposable element FlyBase
2R	6832514	2R_6832514_SNP [dm3] 2R_10945009_SNP [dm6]	A	C	5.318e^-4	0.999	INTERGENIC
X	18169623	X_18169623_SNP [dm3] X_18275590_SNP [dm6]	G	A	5.321e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	18926325	3L_18926325_SNP [dm3] 3L_18933225_SNP [dm6]	G	T	5.332e^-4	0.999	INTRON CG32204
2L	14577909	2L_14577909_SNP [dm3] 2L_14577909_SNP [dm6]	T	C	5.335e^-4	0.999	DOWNSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14771330	3R_14771330_SNP [dm3] 3R_18945608_SNP [dm6]	T	C	5.336e^-4	0.999	INTRON CG42613
3R	4649529	3R_4649529_SNP [dm3] 3R_8823807_SNP [dm6]	G	T	5.341e^-4	0.999	SPLICE_SITE_REGION CG9836 UPSTREAM CG8379 DOWNSTREAM CG8369 INTRON CG9836	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9012750	X_9012750_SNP [dm3] X_9118717_SNP [dm6]	C	T	5.343e^-4	0.999	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	16985775	X_16985775_SNP [dm3] X_17091742_SNP [dm6]	A	G	5.345e^-4	0.999	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2597001	2R_2597001_SNP [dm3] 2R_6709496_SNP [dm6]	T	C	5.355e^-4	0.999	DOWNSTREAM CR43611 INTRON CG3409 & 1 other
3L	21395895	3L_21395895_SNP [dm3] 3L_21402795_SNP [dm6]	G	A	5.355e^-4	0.999	INTRON rgn
3L	16281738	3L_16281738_SNP [dm3] 3L_16288638_SNP [dm6]	A	G	5.356e^-4	0.999	UPSTREAM CG13046 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15806122	3R_15806122_SNP [dm3] 3R_19980400_SNP [dm6]	T	C	5.367e^-4	0.999	DOWNSTREAM CG31213 INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11575414	3L_11575414_INS [dm3] 3L_11582314_INS [dm6]	T	TC	5.371e^-4	0.999	UPSTREAM CG33269 DOWNSTREAM CG32086 INTERGENIC
2L	8995336	2L_8995336_SNP [dm3] 2L_8995336_SNP [dm6]	A	T	5.391e^-4	0.999	SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
2L	2649949	2L_2649949_SNP [dm3] 2L_2649949_SNP [dm6]	G	A	5.399e^-4	0.999	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
2L	7227353	2L_7227353_SNP [dm3] 2L_7227353_SNP [dm6]	T	C	5.400e^-4	0.999	SPLICE_SITE_REGION Ndae1 UPSTREAM CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	22264633	2L_22264633_SNP [dm3] 2L_22264633_SNP [dm6]	A	G	5.404e^-4	0.999	INTERGENIC	transposable element FlyBase
2L	16576226	2L_16576226_SNP [dm3] 2L_16576226_SNP [dm6]	C	A	5.404e^-4	0.999	INTRON CG42389
3L	3715646	3L_3715646_SNP [dm3] 3L_3715646_SNP [dm6]	T	A	5.407e^-4	0.999	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
2L	9597750	2L_9597750_DEL [dm3] 2L_9597750_DEL [dm6]	TT	T	5.410e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11784221	2R_11784221_INS [dm3] 2R_15896716_INS [dm6]	T	TT	5.413e^-4	0.999	UPSTREAM CG33463 INTRON sli	TF binding site mE1_TFBS_cad
3L	16923610	3L_16923610_SNP [dm3] 3L_16930510_SNP [dm6]	G	A	5.413e^-4	0.999	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7470212	3L_7470212_SNP [dm3] 3L_7477112_SNP [dm6]	T	G	5.417e^-4	0.999	DOWNSTREAM CG43292 INTERGENIC
3L	11396468	3L_11396468_SNP [dm3] 3L_11403368_SNP [dm6]	G	A	5.420e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22290565	2L_22290565_SNP [dm3] 2L_22290565_SNP [dm6]	G	A	5.420e^-4	0.999	INTERGENIC	transposable element FlyBase
3R	10412251	3R_10412251_SNP [dm3] 3R_14586529_SNP [dm6]	A	G	5.422e^-4	0.999	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5332424	2L_5332424_SNP [dm3] 2L_5332424_SNP [dm6]	A	T	5.428e^-4	0.999	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16242837	2R_16242837_SNP [dm3] 2R_20355332_SNP [dm6]	G	T	5.437e^-4	0.999	UPSTREAM CG11192 INTERGENIC
X	16509713	X_16509713_SNP [dm3] X_16615680_SNP [dm6]	G	T	5.442e^-4	0.999	DOWNSTREAM mbt INTRON CG9782	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	18931718	X_18931718_SNP [dm3] X_19037685_SNP [dm6]	G	T	5.445e^-4	0.999	INTERGENIC
X	5857870	X_5857870_SNP [dm3] X_5963837_SNP [dm6]	C	G	5.450e^-4	0.999	SYNONYMOUS_CODING fs_1_M3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1171098	3L_1171098_SNP [dm3] 3L_1171098_SNP [dm6]	G	T	5.453e^-4	0.999	INTRON bab2	regulatory region REDfly_CRMs
3R	2253681	3R_2253681_SNP [dm3] 3R_6427959_SNP [dm6]	A	C	5.458e^-4	0.999	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1297869	3L_1297869_SNP [dm3] 3L_1297869_SNP [dm6]	T	C	5.462e^-4	0.999	SYNONYMOUS_CODING Rabex-5 UPSTREAM scf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15709223	3L_15709223_SNP [dm3] 3L_15716123_SNP [dm6]	A	G	5.466e^-4	0.999	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	21947817	3L_21947817_SNP [dm3] 3L_21954717_SNP [dm6]	T	C	5.466e^-4	0.999	UPSTREAM CG7458 INTERGENIC	transposable element FlyBase
2L	4899305	2L_4899305_SNP [dm3] 2L_4899305_SNP [dm6]	T	C	5.473e^-4	0.999	INTRON CG3036
3L	22975409	3L_22975409_SNP [dm3] 3L_22982309_SNP [dm6]	C	A	5.476e^-4	0.999	INTERGENIC
3L	11254790	3L_11254790_SNP [dm3] 3L_11261690_SNP [dm6]	A	G	5.484e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16715987	X_16715987_SNP [dm3] X_16821954_SNP [dm6]	T	C	5.485e^-4	0.999	INTRON CG4829
2L	15943971	2L_15943971_SNP [dm3] 2L_15943971_SNP [dm6]	C	G	5.493e^-4	0.999	INTRON beat-Ib
3R	23727358	3R_23727358_SNP [dm3] 3R_27901636_SNP [dm6]	C	A	5.497e^-4	0.999	INTRON CG34353
3R	8405457	3R_8405457_SNP [dm3] 3R_12579735_SNP [dm6]	C	T	5.504e^-4	0.999	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1662241	2L_1662241_SNP [dm3] 2L_1662241_SNP [dm6]	A	G	5.513e^-4	0.999	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1558653	3L_1558653_SNP [dm3] 3L_1558653_SNP [dm6]	G	A	5.515e^-4	0.999	SPLICE_SITE_REGION Pex10 UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18664272	3R_18664272_SNP [dm3] 3R_22838550_SNP [dm6]	C	G	5.516e^-4	0.999	INTERGENIC
2R	10108901	2R_10108901_SNP [dm3] 2R_14221396_SNP [dm6]	T	A	5.518e^-4	0.999	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12562069	3L_12562069_SNP [dm3] 3L_12568969_SNP [dm6]	A	G	5.525e^-4	0.999	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1297938	3L_1297938_SNP [dm3] 3L_1297938_SNP [dm6]	G	A	5.526e^-4	0.999	SYNONYMOUS_CODING Rabex-5 UPSTREAM scf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10112731	3L_10112731_SNP [dm3] 3L_10119631_SNP [dm6]	T	C	5.539e^-4	0.999	INTRON dpr6
2L	9844279	2L_9844279_SNP [dm3] 2L_9844279_SNP [dm6]	A	G	5.540e^-4	0.999	INTRON nAChRalpha6
2L	15508358	2L_15508358_SNP [dm3] 2L_15508358_SNP [dm6]	C	A	5.542e^-4	0.999	INTERGENIC
3L	10898108	3L_10898108_SNP [dm3] 3L_10905008_SNP [dm6]	A	T	5.545e^-4	0.999	INTERGENIC
3L	10898166	3L_10898166_SNP [dm3] 3L_10905066_SNP [dm6]	C	A	5.545e^-4	0.999	INTERGENIC
X	9474024	X_9474024_SNP [dm3] X_9579991_SNP [dm6]	C	A	5.547e^-4	0.999	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18726994	3L_18726994_SNP [dm3] 3L_18733894_SNP [dm6]	G	T	5.560e^-4	0.999	INTERGENIC
X	18709517	X_18709517_INS [dm3] X_18815484_INS [dm6]	A	TG	5.570e^-4	0.999	INTRON CG42450
3L	16243048	3L_16243048_SNP [dm3] 3L_16249948_SNP [dm6]	C	T	5.586e^-4	0.999	UTR_3_PRIME CG13055
2R	19179384	2R_19179384_SNP [dm3] 2R_23291861_SNP [dm6]	C	T	5.587e^-4	0.999	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20911271	3R_20911271_SNP [dm3] 3R_25085549_SNP [dm6]	T	G	5.590e^-4	0.999	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5903392	X_5903392_SNP [dm3] X_6009359_SNP [dm6]	G	A	5.605e^-4	0.999	INTRON mab-21
X	18731988	X_18731988_SNP [dm3] X_18837955_SNP [dm6]	T	C	5.606e^-4	0.999	INTRON Pvf1
3L	8997365	3L_8997365_SNP [dm3] 3L_9004265_SNP [dm6]	T	C	5.608e^-4	0.999	UPSTREAM Doc3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13709612	3L_13709612_SNP [dm3] 3L_13716512_SNP [dm6]	C	T	5.630e^-4	0.999	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17897040	X_17897040_SNP [dm3] X_18003007_SNP [dm6]	T	A	5.635e^-4	0.999	INTRON Sh
2L	6360499	2L_6360499_SNP [dm3] 2L_6360499_SNP [dm6]	A	G	5.636e^-4	0.999	UPSTREAM CR44777 EXON CR44778
3R	15979543	3R_15979543_INS [dm3] 3R_20153821_INS [dm6]	C	CC	5.649e^-4	0.999	INTERGENIC
2L	17213026	2L_17213026_SNP [dm3] 2L_17213026_SNP [dm6]	A	C	5.654e^-4	0.999	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19662798	2R_19662798_SNP [dm3] 2R_23775275_SNP [dm6]	A	T	5.662e^-4	0.999	INTRON CG9850
3L	10886824	3L_10886824_SNP [dm3] 3L_10893724_SNP [dm6]	A	G	5.677e^-4	0.999	UPSTREAM Cpr67Fb EXON CR45171
X	343776	X_343776_SNP [dm3] X_449743_SNP [dm6]	A	G	5.677e^-4	0.999	INTRON CG32816
X	3961199	X_3961199_SNP [dm3] X_4067166_SNP [dm6]	A	G	5.688e^-4	0.999	INTERGENIC
2L	7654888	2L_7654888_SNP [dm3] 2L_7654888_SNP [dm6]	A	G	5.705e^-4	0.999	INTRON Slob
X	17169963	X_17169963_SNP [dm3] X_17275930_SNP [dm6]	C	A	5.734e^-4	0.999	INTRON f
2R	16872916	2R_16872916_SNP [dm3] 2R_20985411_SNP [dm6]	A	T	5.742e^-4	0.999	SPLICE_SITE_REGION CG15651 INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22569029	3L_22569029_SNP [dm3] 3L_22575929_SNP [dm6]	T	G	5.752e^-4	0.999	INTERGENIC
3R	20264605	3R_20264605_SNP [dm3] 3R_24438883_SNP [dm6]	A	G	5.756e^-4	0.999	UPSTREAM CR43455 INTRON nAChRalpha1
3L	7590221	3L_7590221_SNP [dm3] 3L_7597121_SNP [dm6]	G	A	5.757e^-4	0.999	UPSTREAM CG33275 INTRON CG33275
3R	9735037	3R_9735037_SNP [dm3] 3R_13909315_SNP [dm6]	C	T	5.765e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10082649	3R_10082649_SNP [dm3] 3R_14256927_SNP [dm6]	G	T	5.779e^-4	0.999	UTR_3_PRIME CG43179 INTRON Aats-met
3R	10946092	3R_10946092_SNP [dm3] 3R_15120370_SNP [dm6]	G	A	5.785e^-4	0.999	INTRON CG42788
3R	10965577	3R_10965577_SNP [dm3] 3R_15139855_SNP [dm6]	T	A	5.786e^-4	0.999	UPSTREAM CG3987 DOWNSTREAM CG3984 INTRON CR45600
3R	11298412	3R_11298412_SNP [dm3] 3R_15472690_SNP [dm6]	T	C	5.787e^-4	0.999	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
X	17095542	X_17095542_SNP [dm3] X_17201509_SNP [dm6]	C	A	5.797e^-4	0.999	DOWNSTREAM baz INTRON CG8918
3L	6440777	3L_6440777_SNP [dm3] 3L_6447677_SNP [dm6]	G	A	5.803e^-4	0.999	INTRON CG42747
X	18161396	X_18161396_SNP [dm3] X_18267363_SNP [dm6]	A	G	5.803e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18162455	X_18162455_SNP [dm3] X_18268422_SNP [dm6]	G	A	5.803e^-4	0.999	INTERGENIC
X	18163047	X_18163047_SNP [dm3] X_18269014_SNP [dm6]	A	G	5.803e^-4	0.999	INTERGENIC
2R	1839009	2R_1839009_SNP [dm3] 2R_5951504_SNP [dm6]	C	A	5.810e^-4	0.999	INTERGENIC	transposable element FlyBase
2R	11315019	2R_11315019_SNP [dm3] 2R_15427514_SNP [dm6]	A	G	5.814e^-4	0.999	SYNONYMOUS_CODING CG34188 INTRON CG43729
2R	10527810	2R_10527810_INS [dm3] 2R_14640305_INS [dm6]	T	TACCT	5.819e^-4	0.999	FRAME_SHIFT CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7740465	3L_7740465_DEL [dm3] 3L_7747365_DEL [dm6]	TT	T	5.823e^-4	0.999	UTR_5_PRIME CG13685 INTRON CG32373
3L	10159019	3L_10159019_SNP [dm3] 3L_10165919_SNP [dm6]	G	A	5.835e^-4	0.999	UTR_3_PRIME CG6628 INTRON dpr10
3L	16278838	3L_16278838_SNP [dm3] 3L_16285738_SNP [dm6]	T	A	5.835e^-4	0.999	UPSTREAM CG13047 INTERGENIC
2L	19680566	2L_19680566_SNP [dm3] 2L_19680566_SNP [dm6]	A	C	5.835e^-4	0.999	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13950063	2L_13950063_SNP [dm3] 2L_13950063_SNP [dm6]	T	C	5.842e^-4	0.999	INTRON Ance-3
X	19409317	X_19409317_SNP [dm3] X_19515284_SNP [dm6]	A	G	5.855e^-4	0.999	SYNONYMOUS_CODING CG14200	TF binding site mE1_TFBS_chinmo
3L	16281677	3L_16281677_SNP [dm3] 3L_16288577_SNP [dm6]	G	T	5.857e^-4	0.999	UPSTREAM CG13046 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	14374764	2L_14374764_SNP [dm3] 2L_14374764_SNP [dm6]	A	G	5.862e^-4	0.999	INTERGENIC
2R	17557491	2R_17557491_SNP [dm3] 2R_21669986_SNP [dm6]	C	A	5.864e^-4	0.999	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4700477	3R_4700477_SNP [dm3] 3R_8874755_SNP [dm6]	A	T	5.867e^-4	0.999	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	6977722	3R_6977722_SNP [dm3] 3R_11152000_SNP [dm6]	C	A	5.868e^-4	0.999	NON_SYNONYMOUS_CODING Ugt86Di
3R	8504996	3R_8504996_SNP [dm3] 3R_12679274_SNP [dm6]	A	C	5.869e^-4	0.999	UPSTREAM mbo DOWNSTREAM Cyp313a4 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9012781	X_9012781_SNP [dm3] X_9118748_SNP [dm6]	T	C	5.874e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	11460246	3L_11460246_DEL [dm3] 3L_11467146_DEL [dm6]	AA	A	5.889e^-4	0.999	INTERGENIC
2L	11488527	2L_11488527_SNP [dm3] 2L_11488527_SNP [dm6]	T	C	5.896e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17710583	2R_17710583_SNP [dm3] 2R_21823078_SNP [dm6]	C	T	5.896e^-4	0.999	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15105108	2L_15105108_SNP [dm3] 2L_15105108_SNP [dm6]	T	G	5.903e^-4	0.999	INTERGENIC
3L	11437566	3L_11437566_SNP [dm3] 3L_11444466_SNP [dm6]	C	T	5.907e^-4	0.999	UPSTREAM CG7557 DOWNSTREAM CR44549 INTERGENIC
3R	16909347	3R_16909347_SNP [dm3] 3R_21083625_SNP [dm6]	C	A	5.907e^-4	0.999	UTR_3_PRIME RhoGAP93B
3R	16909355	3R_16909355_SNP [dm3] 3R_21083633_SNP [dm6]	C	T	5.907e^-4	0.999	UTR_3_PRIME RhoGAP93B
3L	24174752	3L_24174752_SNP [dm3] 3L_24181652_SNP [dm6]	A	T	5.908e^-4	0.999	INTRON Snap25
3R	6344151	3R_6344151_SNP [dm3] 3R_10518429_SNP [dm6]	A	T	5.909e^-4	0.999	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11437415	3L_11437415_SNP [dm3] 3L_11444315_SNP [dm6]	A	T	5.910e^-4	0.999	UPSTREAM CG7557 DOWNSTREAM CR44549 INTERGENIC
2R	1877068	2R_1877068_SNP [dm3] 2R_5989563_SNP [dm6]	G	A	5.929e^-4	0.999	INTRON Src42A	transposable element FlyBase
2L	3548324	2L_3548324_SNP [dm3] 2L_3548324_SNP [dm6]	C	T	5.933e^-4	0.999	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3478585	3L_3478585_SNP [dm3] 3L_3478585_SNP [dm6]	A	G	5.948e^-4	0.999	INTRON CG42324
2L	9599057	2L_9599057_SNP [dm3] 2L_9599057_SNP [dm6]	A	G	5.948e^-4	0.999	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9599072	2L_9599072_SNP [dm3] 2L_9599072_SNP [dm6]	A	G	5.948e^-4	0.999	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4315029	3L_4315029_SNP [dm3] 3L_4315029_SNP [dm6]	C	G	5.952e^-4	0.999	SYNONYMOUS_CODING Claspin
2R	14147828	2R_14147828_SNP [dm3] 2R_18260323_SNP [dm6]	C	T	5.954e^-4	0.999	INTERGENIC
3R	18592820	3R_18592820_SNP [dm3] 3R_22767098_SNP [dm6]	A	C	5.955e^-4	0.999	UTR_3_PRIME CG13841 UPSTREAM CG4721 INTRON Usp12-46 & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.439e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.04394

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	3.1998	0.0736

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1517 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13191612	3R_13191612_SNP [dm3] 3R_17365890_SNP [dm6]	T	G	1.330e^-7	0.247	UTR_5_PRIME beat-IIa
3L	16421446	3L_16421446_SNP [dm3] 3L_16428346_SNP [dm6]	G	A	4.831e^-7	0.449	INTRON CG33158 & 1 other
3L	16421447	3L_16421447_SNP [dm3] 3L_16428347_SNP [dm6]	G	A	1.652e^-6	0.957	INTRON CG33158 & 1 other
3L	16421458	3L_16421458_SNP [dm3] 3L_16428358_SNP [dm6]	T	A	2.850e^-6	0.957	INTRON CG33158 & 1 other
2R	19400594	2R_19400594_SNP [dm3] 2R_23513071_SNP [dm6]	C	G	2.855e^-6	0.957	UPSTREAM CG3906 INTERGENIC
3R	15785599	3R_15785599_SNP [dm3] 3R_19959877_SNP [dm6]	G	A	3.092e^-6	0.957	INTRON Hs6st
2R	12608306	2R_12608306_SNP [dm3] 2R_16720801_SNP [dm6]	T	C	5.412e^-6	1	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7590221	3L_7590221_SNP [dm3] 3L_7597121_SNP [dm6]	G	A	5.830e^-6	1	UPSTREAM CG33275 INTRON CG33275
2L	84418	2L_84418_SNP [dm3] 2L_84418_SNP [dm6]	A	G	7.070e^-6	1	INTRON net
3R	15785639	3R_15785639_SNP [dm3] 3R_19959917_SNP [dm6]	C	A	8.477e^-6	1	INTRON Hs6st
2R	20411830	2R_20411830_SNP [dm3] 2R_24524307_SNP [dm6]	C	G	8.798e^-6	1	UTR_3_PRIME CG4612	TF binding site mE1_TFBS_chinmo
2L	10135017	2L_10135017_SNP [dm3] 2L_10135017_SNP [dm6]	C	T	9.710e^-6	1	INTRON CG44153
X	12360444	X_12360444_SNP [dm3] X_12466411_SNP [dm6]	C	A	1.024e^-5	1	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7645052	3L_7645052_SNP [dm3] 3L_7651952_SNP [dm6]	T	C	1.032e^-5	1	UTR_3_PRIME CG7492 DOWNSTREAM PGRP-SD INTRON CG32373
2R	2597001	2R_2597001_SNP [dm3] 2R_6709496_SNP [dm6]	T	C	1.432e^-5	1	DOWNSTREAM CR43611 INTRON CG3409 & 1 other
3L	6669148	3L_6669148_SNP [dm3] 3L_6676048_SNP [dm6]	C	T	1.852e^-5	1	INTERGENIC
2R	17780481	2R_17780481_SNP [dm3] 2R_21892976_SNP [dm6]	T	G	1.926e^-5	1	INTRON Fili
2L	11126025	2L_11126025_SNP [dm3] 2L_11126025_SNP [dm6]	A	C	1.929e^-5	1	SYNONYMOUS_CODING Nup160
3R	13191222	3R_13191222_SNP [dm3] 3R_17365500_SNP [dm6]	C	T	2.023e^-5	1	INTRON beat-IIa
2R	17658426	2R_17658426_SNP [dm3] 2R_21770921_SNP [dm6]	G	C	2.092e^-5	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10455232	3L_10455232_SNP [dm3] 3L_10462132_SNP [dm6]	A	G	2.136e^-5	1	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2L	67188	2L_67188_SNP [dm3] 2L_67188_SNP [dm6]	T	C	2.137e^-5	1	UTR_5_PRIME dbr DOWNSTREAM CR45339 & 1 other INTRON dbr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16678770	2R_16678770_SNP [dm3] 2R_20791265_SNP [dm6]	G	A	2.486e^-5	1	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
3L	12303919	3L_12303919_SNP [dm3] 3L_12310819_SNP [dm6]	A	G	2.710e^-5	1	UTR_5_PRIME CG44355
3L	9726335	3L_9726335_SNP [dm3] 3L_9733235_SNP [dm6]	C	A	2.966e^-5	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
2L	9632090	2L_9632090_SNP [dm3] 2L_9632090_SNP [dm6]	A	T	3.091e^-5	1	INTERGENIC
3L	7473283	3L_7473283_SNP [dm3] 3L_7480183_SNP [dm6]	C	A	3.208e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16285822	3L_16285822_SNP [dm3] 3L_16292722_SNP [dm6]	A	T	3.289e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16285831	3L_16285831_SNP [dm3] 3L_16292731_SNP [dm6]	C	A	3.289e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	897788	2L_897788_SNP [dm3] 2L_897788_SNP [dm6]	G	T	3.307e^-5	1	UPSTREAM Lsp1beta EXON CR45348	TF binding site mE1_TFBS_chinmo
3R	18018215	3R_18018215_SNP [dm3] 3R_22192493_SNP [dm6]	T	C	3.343e^-5	1	INTRON SKIP
3L	6650285	3L_6650285_INS [dm3] 3L_6657185_INS [dm6]	A	AA	3.465e^-5	1	INTERGENIC
3L	12939995	3L_12939995_SNP [dm3] 3L_12946895_SNP [dm6]	A	G	3.577e^-5	1	INTERGENIC
2R	9362289	2R_9362289_SNP [dm3] 2R_13474784_SNP [dm6]	C	T	3.609e^-5	1	INTRON arr
3L	9726416	3L_9726416_SNP [dm3] 3L_9733316_SNP [dm6]	C	T	3.637e^-5	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
X	18709517	X_18709517_INS [dm3] X_18815484_INS [dm6]	A	TG	3.654e^-5	1	INTRON CG42450
3L	3801531	3L_3801531_SNP [dm3] 3L_3801531_SNP [dm6]	A	T	3.777e^-5	1	UPSTREAM CG32264 INTRON CG32264
3R	15785901	3R_15785901_SNP [dm3] 3R_19960179_SNP [dm6]	A	C	3.842e^-5	1	INTRON Hs6st
3R	13191253	3R_13191253_SNP [dm3] 3R_17365531_SNP [dm6]	A	G	3.842e^-5	1	INTRON beat-IIa
3L	885108	3L_885108_SNP [dm3] 3L_885108_SNP [dm6]	C	G	3.848e^-5	1	INTRON CG32479
3R	13214154	3R_13214154_SNP [dm3] 3R_17388432_SNP [dm6]	G	T	3.945e^-5	1	INTRON Brf & 1 other
3R	13214155	3R_13214155_SNP [dm3] 3R_17388433_SNP [dm6]	A	C	3.945e^-5	1	INTRON Brf & 1 other
2L	12332065	2L_12332065_SNP [dm3] 2L_12332065_SNP [dm6]	G	A	4.085e^-5	1	INTERGENIC
X	20224332	X_20224332_SNP [dm3] X_20353305_SNP [dm6]	G	A	4.124e^-5	1	INTERGENIC
X	10397709	X_10397709_SNP [dm3] X_10503676_SNP [dm6]	A	G	4.153e^-5	1	INTRON spri
X	17894664	X_17894664_SNP [dm3] X_18000631_SNP [dm6]	C	T	4.187e^-5	1	INTRON Sh
2L	7654888	2L_7654888_SNP [dm3] 2L_7654888_SNP [dm6]	A	G	4.394e^-5	1	INTRON Slob
3L	9724592	3L_9724592_SNP [dm3] 3L_9731492_SNP [dm6]	T	G	4.444e^-5	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	14954607	2L_14954607_SNP [dm3] 2L_14954607_SNP [dm6]	G	C	4.466e^-5	1	INTRON CG42313
2R	16668190	2R_16668190_SNP [dm3] 2R_20780685_SNP [dm6]	G	A	4.501e^-5	1	EXON CR44666
2L	17170505	2L_17170505_SNP [dm3] 2L_17170505_SNP [dm6]	C	T	4.548e^-5	1	START_GAINED CG34106 UTR_5_PRIME CG34106 UTR_3_PRIME beat-IIIa UPSTREAM CG34106
X	12854449	X_12854449_DEL [dm3] X_12960416_DEL [dm6]	CAAC	C	4.568e^-5	1
2L	158894	2L_158894_SNP [dm3] 2L_158894_SNP [dm6]	G	A	4.574e^-5	1	UPSTREAM spen & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16279181	3L_16279181_SNP [dm3] 3L_16286081_SNP [dm6]	A	G	4.586e^-5	1	UPSTREAM CG13047 INTERGENIC
3R	13214151	3R_13214151_SNP [dm3] 3R_17388429_SNP [dm6]	A	T	4.752e^-5	1	INTRON Brf & 1 other
3L	7473293	3L_7473293_SNP [dm3] 3L_7480193_SNP [dm6]	C	T	4.819e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15785437	3R_15785437_SNP [dm3] 3R_19959715_SNP [dm6]	T	G	4.893e^-5	1	INTRON Hs6st
2R	10112541	2R_10112541_SNP [dm3] 2R_14225036_SNP [dm6]	C	T	5.217e^-5	1	INTRON CG8468	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17710557	2R_17710557_SNP [dm3] 2R_21823052_SNP [dm6]	G	A	5.217e^-5	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17780653	2R_17780653_SNP [dm3] 2R_21893148_SNP [dm6]	G	C	5.340e^-5	1	INTRON Fili
2R	17547921	2R_17547921_SNP [dm3] 2R_21660416_SNP [dm6]	C	T	5.484e^-5	1	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2943491	2R_2943491_SNP [dm3] 2R_7055986_SNP [dm6]	G	A	5.538e^-5	1	SYNONYMOUS_CODING Tsp42Eo UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep
3L	9725353	3L_9725353_SNP [dm3] 3L_9732253_SNP [dm6]	G	A	5.542e^-5	1	SYNONYMOUS_CODING CG6749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11627301	X_11627301_SNP [dm3] X_11733268_SNP [dm6]	A	C	5.547e^-5	1	UPSTREAM inaF-B INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
X	11627399	X_11627399_SNP [dm3] X_11733366_SNP [dm6]	T	A	5.547e^-5	1	UPSTREAM inaF-B INTRON CG15221 & 1 other
X	11627405	X_11627405_SNP [dm3] X_11733372_SNP [dm6]	G	T	5.547e^-5	1	UPSTREAM inaF-B INTRON CG15221 & 1 other
3L	6998860	3L_6998860_SNP [dm3] 3L_7005760_SNP [dm6]	A	T	5.574e^-5	1	INTRON Mp
3L	16279185	3L_16279185_SNP [dm3] 3L_16286085_SNP [dm6]	G	T	5.700e^-5	1	UPSTREAM CG13047 INTERGENIC
2L	2161061	2L_2161061_SNP [dm3] 2L_2161061_SNP [dm6]	T	A	5.701e^-5	1	UTR_5_PRIME aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15785829	3R_15785829_SNP [dm3] 3R_19960107_SNP [dm6]	A	C	5.839e^-5	1	INTRON Hs6st
3L	14683494	3L_14683494_SNP [dm3] 3L_14690394_SNP [dm6]	A	G	5.926e^-5	1	UPSTREAM CG13477 INTRON ome
2R	2951311	2R_2951311_SNP [dm3] 2R_7063806_SNP [dm6]	A	G	5.960e^-5	1	UPSTREAM Tsp42Er & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7258308	3L_7258308_SNP [dm3] 3L_7265208_SNP [dm6]	T	A	5.967e^-5	1	DOWNSTREAM unc-13-4A INTERGENIC
2R	17709579	2R_17709579_SNP [dm3] 2R_21822074_SNP [dm6]	T	A	5.986e^-5	1	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17709606	2R_17709606_SNP [dm3] 2R_21822101_SNP [dm6]	C	A	5.986e^-5	1	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15785381	3R_15785381_SNP [dm3] 3R_19959659_SNP [dm6]	G	C	5.992e^-5	1	INTRON Hs6st
3R	15785382	3R_15785382_SNP [dm3] 3R_19959660_SNP [dm6]	T	C	5.992e^-5	1	INTRON Hs6st
X	11627415	X_11627415_SNP [dm3] X_11733382_SNP [dm6]	C	T	5.993e^-5	1	UPSTREAM inaF-B INTRON CG15221 & 1 other
3R	6199532	3R_6199532_SNP [dm3] 3R_10373810_SNP [dm6]	C	T	6.152e^-5	1	INTRON Rfx	TF binding site mE1_TFBS_cad
2R	6870135	2R_6870135_SNP [dm3] 2R_10982630_SNP [dm6]	A	G	6.205e^-5	1	UTR_3_PRIME luna DOWNSTREAM luna
2L	9685568	2L_9685568_SNP [dm3] 2L_9685568_SNP [dm6]	A	C	6.303e^-5	1	INTRON Pka-C1
2R	20203137	2R_20203137_SNP [dm3] 2R_24315614_SNP [dm6]	G	T	6.410e^-5	1	INTERGENIC
2R	6870156	2R_6870156_SNP [dm3] 2R_10982651_SNP [dm6]	T	G	6.623e^-5	1	UTR_3_PRIME luna DOWNSTREAM luna
2R	10112415	2R_10112415_SNP [dm3] 2R_14224910_SNP [dm6]	T	G	6.672e^-5	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10561091	3R_10561091_SNP [dm3] 3R_14735369_SNP [dm6]	C	G	6.734e^-5	1	INTRON eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15299310	2L_15299310_DEL [dm3] 2L_15299310_DEL [dm6]	AA	A	6.791e^-5	1	UTR_3_PRIME CG15262
2L	7595142	2L_7595142_SNP [dm3] 2L_7595142_SNP [dm6]	A	T	6.864e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17710583	2R_17710583_SNP [dm3] 2R_21823078_SNP [dm6]	C	T	7.036e^-5	1	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9171185	2R_9171185_SNP [dm3] 2R_13283680_SNP [dm6]	A	G	7.093e^-5	1	INTRON Dh31-R
3L	23218963	3L_23218963_SNP [dm3] 3L_23225863_SNP [dm6]	A	G	7.102e^-5	1	INTRON nAChRalpha4	transposable element FlyBase
2R	4389781	2R_4389781_SNP [dm3] 2R_8502276_SNP [dm6]	A	G	7.216e^-5	1	INTRON mtt
3L	10267150	3L_10267150_SNP [dm3] 3L_10274050_SNP [dm6]	G	A	7.263e^-5	1	SYNONYMOUS_CODING Or67d
3L	23218861	3L_23218861_SNP [dm3] 3L_23225761_SNP [dm6]	A	G	7.296e^-5	1	INTRON nAChRalpha4
3L	16279184	3L_16279184_SNP [dm3] 3L_16286084_SNP [dm6]	T	C	7.487e^-5	1	UPSTREAM CG13047 INTERGENIC
3R	13215591	3R_13215591_SNP [dm3] 3R_17389869_SNP [dm6]	A	T	7.516e^-5	1	UTR_3_PRIME lute INTRON Brf
3R	15526511	3R_15526511_SNP [dm3] 3R_19700789_SNP [dm6]	C	G	7.558e^-5	1	INTERGENIC
2R	19940487	2R_19940487_SNP [dm3] 2R_24052964_SNP [dm6]	C	T	7.659e^-5	1	UTR_3_PRIME ppk29 & 1 other
3L	16723767	3L_16723767_SNP [dm3] 3L_16730667_SNP [dm6]	A	T	7.772e^-5	1	INTRON Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16279187	3L_16279187_SNP [dm3] 3L_16286087_SNP [dm6]	T	C	7.848e^-5	1	UPSTREAM CG13047 INTERGENIC
2L	141836	2L_141836_SNP [dm3] 2L_141836_SNP [dm6]	A	G	7.854e^-5	1	SYNONYMOUS_CODING CG31974 UPSTREAM CG31976 & 1 other INTRON CG11455	TF binding site mE1_TFBS_sens
3L	9725234	3L_9725234_SNP [dm3] 3L_9732134_SNP [dm6]	A	G	8.041e^-5	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14396612	2R_14396612_SNP [dm3] 2R_18509107_SNP [dm6]	A	T	8.059e^-5	1	INTERGENIC
2R	18079115	2R_18079115_SNP [dm3] 2R_22191610_SNP [dm6]	T	A	8.095e^-5	1	INTRON Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12377116	3L_12377116_SNP [dm3] 3L_12384016_SNP [dm6]	C	T	8.175e^-5	1	INTRON Ncc69
2L	11645700	2L_11645700_SNP [dm3] 2L_11645700_SNP [dm6]	T	C	8.190e^-5	1	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
2L	17172180	2L_17172180_SNP [dm3] 2L_17172180_SNP [dm6]	T	A	8.250e^-5	1	UTR_3_PRIME beat-IIIa & 1 other DOWNSTREAM CG34106
3R	26162748	3R_26162748_SNP [dm3] 3R_30337026_SNP [dm6]	T	C	8.250e^-5	1	INTRON hdc
3R	25201682	3R_25201682_SNP [dm3] 3R_29375960_SNP [dm6]	G	A	8.441e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	7258443	3L_7258443_SNP [dm3] 3L_7265343_SNP [dm6]	C	A	8.446e^-5	1	DOWNSTREAM unc-13-4A INTERGENIC
3L	5147392	3L_5147392_SNP [dm3] 3L_5154292_SNP [dm6]	G	A	8.485e^-5	1	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_eve
3L	8278427	3L_8278427_SNP [dm3] 3L_8285327_SNP [dm6]	G	A	8.608e^-5	1	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19942802	2R_19942802_SNP [dm3] 2R_24055279_SNP [dm6]	G	T	8.680e^-5	1	UTR_5_PRIME ppk29 UPSTREAM CG13563
3L	827264	3L_827264_SNP [dm3] 3L_827264_SNP [dm6]	C	A	8.776e^-5	1	UPSTREAM snoRNA:Me28S-C788b DOWNSTREAM snoRNA:Me28S-C788a & 2 others INTRON CG13900 & 1 other
2R	19711869	2R_19711869_SNP [dm3] 2R_23824346_SNP [dm6]	A	C	8.820e^-5	1	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
3R	18088213	3R_18088213_DEL [dm3] 3R_22262491_DEL [dm6]	TGCTAT	T	8.893e^-5	1	INTRON SKIP
2R	14294843	2R_14294843_SNP [dm3] 2R_18407338_SNP [dm6]	C	T	8.957e^-5	1	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9685574	2L_9685574_SNP [dm3] 2L_9685574_SNP [dm6]	T	A	9.039e^-5	1	INTRON Pka-C1
3L	16721190	3L_16721190_SNP [dm3] 3L_16728090_SNP [dm6]	G	A	9.040e^-5	1	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	6027661	2R_6027661_SNP [dm3] 2R_10140156_SNP [dm6]	C	T	9.084e^-5	1	SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467
3L	10603721	3L_10603721_SNP [dm3] 3L_10610621_SNP [dm6]	G	A	9.198e^-5	1	INTERGENIC
3L	2703736	3L_2703736_SNP [dm3] 3L_2703736_SNP [dm6]	C	G	9.201e^-5	1	INTRON Fife
X	14622949	X_14622949_SNP [dm3] X_14728916_SNP [dm6]	T	G	9.236e^-5	1	INTRON NetB
2L	151022	2L_151022_SNP [dm3] 2L_151022_SNP [dm6]	T	G	9.258e^-5	1	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_sens
2L	10872988	2L_10872988_SNP [dm3] 2L_10872988_SNP [dm6]	T	A	9.289e^-5	1	DOWNSTREAM CR45454 INTERGENIC
3R	14186724	3R_14186724_SNP [dm3] 3R_18361002_SNP [dm6]	C	G	9.353e^-5	1	UPSTREAM CG15803 & 1 other EXON CR45634
3R	25370412	3R_25370412_SNP [dm3] 3R_29544690_SNP [dm6]	G	T	9.368e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	14883629	3L_14883629_DEL [dm3] 3L_14890529_DEL [dm6]	TAT	T	9.387e^-5	1	UPSTREAM CR45398 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14499088	2R_14499088_SNP [dm3] 2R_18611583_SNP [dm6]	T	G	9.641e^-5	1	START_GAINED GEFmeso UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15781662	3R_15781662_SNP [dm3] 3R_19955940_SNP [dm6]	G	A	9.670e^-5	1	INTRON Hs6st
3L	16279192	3L_16279192_INS [dm3] 3L_16286092_INS [dm6]	T	ACGG	9.759e^-5	1	UPSTREAM CG13047 INTERGENIC
3L	10722020	3L_10722020_SNP [dm3] 3L_10728920_SNP [dm6]	G	A	9.782e^-5	1	INTERGENIC
3L	9723804	3L_9723804_SNP [dm3] 3L_9730704_SNP [dm6]	G	A	9.822e^-5	1	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	2947492	2R_2947492_SNP [dm3] 2R_7059987_SNP [dm6]	A	G	9.962e^-5	1	INTRON pgant3
2L	7654978	2L_7654978_SNP [dm3] 2L_7654978_SNP [dm6]	T	A	9.990e^-5	1	INTRON Slob
3L	14503618	3L_14503618_SNP [dm3] 3L_14510518_SNP [dm6]	C	G	1.003e^-4	1	UPSTREAM bbg INTRON bbg
3L	14503619	3L_14503619_SNP [dm3] 3L_14510519_SNP [dm6]	G	A	1.003e^-4	1	UPSTREAM bbg INTRON bbg
2L	9844913	2L_9844913_SNP [dm3] 2L_9844913_SNP [dm6]	A	C	1.007e^-4	1	INTRON nAChRalpha6
3L	14889931	3L_14889931_SNP [dm3] 3L_14896831_SNP [dm6]	G	C	1.024e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14396602	2R_14396602_SNP [dm3] 2R_18509097_SNP [dm6]	A	C	1.028e^-4	1	INTERGENIC
3L	16231211	3L_16231211_SNP [dm3] 3L_16238111_SNP [dm6]	T	C	1.034e^-4	1	INTRON l_3_72Dr
3R	17274496	3R_17274496_SNP [dm3] 3R_21448774_SNP [dm6]	C	T	1.038e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9771323	3L_9771323_SNP [dm3] 3L_9778223_SNP [dm6]	G	A	1.044e^-4	1	INTRON CG8177	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7144489	X_7144489_SNP [dm3] X_7250456_SNP [dm6]	G	A	1.046e^-4	1	INTRON CR44357
2R	15579618	2R_15579618_SNP [dm3] 2R_19692113_SNP [dm6]	A	C	1.050e^-4	1	UPSTREAM CR44506 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	1.054e^-4	1	SYNONYMOUS_CODING CG32119 INTRON caps
2L	160228	2L_160228_SNP [dm3] 2L_160228_SNP [dm6]	T	C	1.055e^-4	1	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1590123	2L_1590123_SNP [dm3] 2L_1590123_SNP [dm6]	A	G	1.060e^-4	1	INTRON haf
2L	5675810	2L_5675810_SNP [dm3] 2L_5675810_SNP [dm6]	C	G	1.063e^-4	1	INTERGENIC
3L	825772	3L_825772_SNP [dm3] 3L_825772_SNP [dm6]	G	A	1.072e^-4	1	DOWNSTREAM CG13900 & 1 other INTERGENIC
3R	7358493	3R_7358493_SNP [dm3] 3R_11532771_SNP [dm6]	T	C	1.089e^-4	1	DOWNSTREAM dpr4 INTERGENIC
3L	11915177	3L_11915177_SNP [dm3] 3L_11922077_SNP [dm6]	A	G	1.098e^-4	1	SYNONYMOUS_CODING CG11588 DOWNSTREAM CG5718 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21332255	3L_21332255_SNP [dm3] 3L_21339155_SNP [dm6]	C	T	1.105e^-4	1	NON_SYNONYMOUS_CODING CG7324 DOWNSTREAM CG7338	TF binding site mE1_TFBS_cad
3L	11368986	3L_11368986_SNP [dm3] 3L_11375886_SNP [dm6]	G	T	1.106e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4062681	2L_4062681_SNP [dm3] 2L_4062681_SNP [dm6]	C	T	1.146e^-4	1	INTRON ed
2L	11645692	2L_11645692_SNP [dm3] 2L_11645692_SNP [dm6]	T	A	1.163e^-4	1	NON_SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
2L	3927637	2L_3927637_SNP [dm3] 2L_3927637_SNP [dm6]	G	T	1.163e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	6991619	3L_6991619_SNP [dm3] 3L_6998519_SNP [dm6]	A	T	1.164e^-4	1	UPSTREAM Mp INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19583163	3R_19583163_SNP [dm3] 3R_23757441_SNP [dm6]	C	T	1.172e^-4	1	SYNONYMOUS_CODING Hrd3 UPSTREAM Plip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6382386	3R_6382386_SNP [dm3] 3R_10556664_SNP [dm6]	C	T	1.181e^-4	1	INTRON hth
3L	5127749	3L_5127749_SNP [dm3] 3L_5134649_SNP [dm6]	G	T	1.185e^-4	1	NON_SYNONYMOUS_CODING CG4603 UPSTREAM CR45160	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10475417	3L_10475417_SNP [dm3] 3L_10482317_SNP [dm6]	T	A	1.202e^-4	1	INTRON A2bp1
X	5553815	X_5553815_SNP [dm3] X_5659782_SNP [dm6]	G	T	1.205e^-4	1	INTRON CG42265
2L	159531	2L_159531_SNP [dm3] 2L_159531_SNP [dm6]	T	C	1.207e^-4	1	UTR_5_PRIME spen UPSTREAM CG33635	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	765493	X_765493_SNP [dm3] X_871460_SNP [dm6]	G	A	1.216e^-4	1	INTRON CG43867
2L	17204563	2L_17204563_SNP [dm3] 2L_17204563_SNP [dm6]	C	T	1.217e^-4	1	INTRON beat-IIIc
3L	5893565	3L_5893565_SNP [dm3] 3L_5900465_SNP [dm6]	C	T	1.218e^-4	1	SYNONYMOUS_CODING CG32409 DOWNSTREAM QC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10946646	3R_10946646_INS [dm3] 3R_15120924_INS [dm6]	T	TGGT	1.221e^-4	1	INTRON CG42788
X	16161908	X_16161908_SNP [dm3] X_16267875_SNP [dm6]	T	C	1.225e^-4	1	INTRON kat80
2L	3671611	2L_3671611_SNP [dm3] 2L_3671611_SNP [dm6]	G	A	1.238e^-4	1	INTRON CG34340
X	3100516	X_3100516_SNP [dm3] X_3206483_SNP [dm6]	T	C	1.239e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15242360	2R_15242360_SNP [dm3] 2R_19354855_SNP [dm6]	G	T	1.240e^-4	1	INTRON Rgk1
3L	9723817	3L_9723817_SNP [dm3] 3L_9730717_SNP [dm6]	A	C	1.243e^-4	1	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	12998650	X_12998650_SNP [dm3] X_13104617_SNP [dm6]	C	G	1.254e^-4	1	INTRON CG43313
3L	16285823	3L_16285823_SNP [dm3] 3L_16292723_SNP [dm6]	A	C	1.274e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16277555	3L_16277555_INS [dm3] 3L_16284455_INS [dm6]	G	GTGG	1.279e^-4	1	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
2R	6870263	2R_6870263_SNP [dm3] 2R_10982758_SNP [dm6]	T	A	1.288e^-4	1	UTR_3_PRIME luna DOWNSTREAM luna
3L	23218623	3L_23218623_SNP [dm3] 3L_23225523_SNP [dm6]	A	T	1.289e^-4	1	INTRON nAChRalpha4
2R	8846754	2R_8846754_SNP [dm3] 2R_12959249_SNP [dm6]	A	G	1.290e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10788264	3R_10788264_SNP [dm3] 3R_14962542_SNP [dm6]	T	A	1.300e^-4	1	INTERGENIC
2R	17277748	2R_17277748_SNP [dm3] 2R_21390243_SNP [dm6]	G	T	1.304e^-4	1	DOWNSTREAM Acox57D-p INTRON Acox57D-d
X	16985775	X_16985775_SNP [dm3] X_17091742_SNP [dm6]	A	G	1.307e^-4	1	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2941493	2R_2941493_SNP [dm3] 2R_7053988_SNP [dm6]	C	A	1.321e^-4	1	UTR_3_PRIME Tsp42En UPSTREAM Tsp42Eo DOWNSTREAM Tsp42Ep	TF binding site mE1_TFBS_cad
3L	10110261	3L_10110261_SNP [dm3] 3L_10117161_SNP [dm6]	G	C	1.325e^-4	1	INTRON dpr6
3L	14328089	3L_14328089_SNP [dm3] 3L_14334989_SNP [dm6]	G	A	1.329e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23218324	3L_23218324_SNP [dm3] 3L_23225224_SNP [dm6]	T	C	1.339e^-4	1	INTRON nAChRalpha4
3R	15525853	3R_15525853_SNP [dm3] 3R_19700131_SNP [dm6]	A	G	1.345e^-4	1	INTERGENIC
3R	17967979	3R_17967979_SNP [dm3] 3R_22142257_SNP [dm6]	T	A	1.350e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3R	10788252	3R_10788252_SNP [dm3] 3R_14962530_SNP [dm6]	G	A	1.355e^-4	1	INTERGENIC
2L	11846736	2L_11846736_SNP [dm3] 2L_11846736_SNP [dm6]	T	G	1.360e^-4	1	UPSTREAM Mal-B1 INTRON Pde1c
3L	12839768	3L_12839768_SNP [dm3] 3L_12846668_SNP [dm6]	T	A	1.361e^-4	1	INTRON CG10948	TF binding site mE1_TFBS_kn
3L	16722053	3L_16722053_SNP [dm3] 3L_16728953_SNP [dm6]	A	G	1.366e^-4	1	SYNONYMOUS_CODING Dbp73D UPSTREAM PGRP-SB1	TF binding site mE1_TFBS_sens
X	13122979	X_13122979_SNP [dm3] X_13228946_SNP [dm6]	A	T	1.366e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	10263604	3L_10263604_SNP [dm3] 3L_10270504_SNP [dm6]	G	A	1.369e^-4	1	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	10263623	3L_10263623_SNP [dm3] 3L_10270523_SNP [dm6]	C	A	1.369e^-4	1	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
X	13123046	X_13123046_INS [dm3] X_13229013_INS [dm6]	G	GTTGCA	1.372e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	11290090	2R_11290090_SNP [dm3] 2R_15402585_SNP [dm6]	G	T	1.374e^-4	1	INTRON CG43729
2L	5675550	2L_5675550_SNP [dm3] 2L_5675550_SNP [dm6]	C	T	1.377e^-4	1	INTERGENIC
3R	5895628	3R_5895628_SNP [dm3] 3R_10069906_SNP [dm6]	C	T	1.381e^-4	1	INTERGENIC
2R	10989018	2R_10989018_SNP [dm3] 2R_15101513_SNP [dm6]	A	G	1.382e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	146602	2L_146602_SNP [dm3] 2L_146602_SNP [dm6]	A	C	1.405e^-4	1	INTRON CG11455 & 1 other
2R	19400570	2R_19400570_SNP [dm3] 2R_23513047_SNP [dm6]	C	T	1.412e^-4	1	UPSTREAM CG3906 INTERGENIC
2R	14396629	2R_14396629_SNP [dm3] 2R_18509124_SNP [dm6]	G	C	1.413e^-4	1	INTERGENIC
2L	900123	2L_900123_SNP [dm3] 2L_900123_SNP [dm6]	A	T	1.415e^-4	1	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12688604	3R_12688604_SNP [dm3] 3R_16862882_SNP [dm6]	T	G	1.415e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	19432806	3L_19432806_SNP [dm3] 3L_19439706_SNP [dm6]	G	C	1.418e^-4	1	DOWNSTREAM CR45732 INTERGENIC
2L	9685844	2L_9685844_SNP [dm3] 2L_9685844_SNP [dm6]	C	A	1.426e^-4	1	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	795644	3L_795644_SNP [dm3] 3L_795644_SNP [dm6]	G	C	1.427e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	23218300	3L_23218300_SNP [dm3] 3L_23225200_SNP [dm6]	C	T	1.429e^-4	1	INTRON nAChRalpha4
3L	6678498	3L_6678498_SNP [dm3] 3L_6685398_SNP [dm6]	G	C	1.429e^-4	1	INTERGENIC
X	16161903	X_16161903_SNP [dm3] X_16267870_SNP [dm6]	T	A	1.430e^-4	1	INTRON kat80
3R	6113180	3R_6113180_SNP [dm3] 3R_10287458_SNP [dm6]	G	A	1.433e^-4	1	INTRON CG43143
3L	13839685	3L_13839685_SNP [dm3] 3L_13846585_SNP [dm6]	A	G	1.441e^-4	1	INTRON Hml
3L	8007297	3L_8007297_SNP [dm3] 3L_8014197_SNP [dm6]	G	A	1.443e^-4	1	INTRON nmo
2R	17158487	2R_17158487_SNP [dm3] 2R_21270982_SNP [dm6]	C	A	1.479e^-4	1	INTRON Rgk3
2R	19624544	2R_19624544_SNP [dm3] 2R_23737021_SNP [dm6]	A	G	1.480e^-4	1	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10454678	3L_10454678_SNP [dm3] 3L_10461578_SNP [dm6]	C	A	1.481e^-4	1	NON_SYNONYMOUS_CODING Gem3
3L	15164955	3L_15164955_SNP [dm3] 3L_15171855_SNP [dm6]	C	A	1.485e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8278488	3L_8278488_SNP [dm3] 3L_8285388_SNP [dm6]	G	A	1.497e^-4	1	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17212098	3L_17212098_SNP [dm3] 3L_17218998_SNP [dm6]	T	C	1.517e^-4	1	INTRON Rbp6
3L	16273444	3L_16273444_SNP [dm3] 3L_16280344_SNP [dm6]	T	A	1.518e^-4	1	UPSTREAM CG13064 DOWNSTREAM CG13049 INTERGENIC
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	1.523e^-4	1	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3R	12688544	3R_12688544_SNP [dm3] 3R_16862822_SNP [dm6]	A	C	1.528e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_cad
X	11162595	X_11162595_SNP [dm3] X_11268562_SNP [dm6]	G	C	1.535e^-4	1	INTRON CG44422
3R	15785368	3R_15785368_SNP [dm3] 3R_19959646_SNP [dm6]	C	T	1.542e^-4	1	INTRON Hs6st
2R	15569930	2R_15569930_SNP [dm3] 2R_19682425_SNP [dm6]	A	G	1.559e^-4	1	DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9726266	3L_9726266_SNP [dm3] 3L_9733166_SNP [dm6]	C	T	1.568e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
X	5303785	X_5303785_SNP [dm3] X_5409752_SNP [dm6]	T	G	1.570e^-4	1	INTRON NAAT1
X	13123028	X_13123028_DEL [dm3] X_13228995_DEL [dm6]	AAATTCTAGTCTAAATAC...	A	1.578e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	17967972	3R_17967972_SNP [dm3] 3R_22142250_SNP [dm6]	C	T	1.580e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2L	15192008	2L_15192008_SNP [dm3] 2L_15192008_SNP [dm6]	T	C	1.586e^-4	1	INTRON CG4168
3R	26062475	3R_26062475_SNP [dm3] 3R_30236753_SNP [dm6]	A	C	1.592e^-4	1	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19582843	3R_19582843_SNP [dm3] 3R_23757121_SNP [dm6]	T	G	1.594e^-4	1	SYNONYMOUS_CODING Hrd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7473282	3L_7473282_SNP [dm3] 3L_7480182_SNP [dm6]	C	T	1.594e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17125186	2L_17125186_SNP [dm3] 2L_17125186_SNP [dm6]	C	G	1.595e^-4	1	SYNONYMOUS_CODING CG31784
2R	19016007	2R_19016007_SNP [dm3] 2R_23128484_SNP [dm6]	T	C	1.603e^-4	1	UPSTREAM CR44455 DOWNSTREAM CG3215 & 1 other INTERGENIC
X	17141922	X_17141922_SNP [dm3] X_17247889_SNP [dm6]	A	G	1.611e^-4	1	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
3L	3858766	3L_3858766_SNP [dm3] 3L_3858766_SNP [dm6]	G	T	1.611e^-4	1	INTRON Awh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14396559	2R_14396559_SNP [dm3] 2R_18509054_SNP [dm6]	G	T	1.615e^-4	1	INTERGENIC
2L	9928785	2L_9928785_SNP [dm3] 2L_9928785_SNP [dm6]	C	T	1.619e^-4	1	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2R	4570585	2R_4570585_SNP [dm3] 2R_8683080_SNP [dm6]	A	G	1.622e^-4	1	UPSTREAM tRNA:L2:44EF DOWNSTREAM Acsl INTERGENIC
2R	4570593	2R_4570593_SNP [dm3] 2R_8683088_SNP [dm6]	T	A	1.622e^-4	1	UPSTREAM tRNA:L2:44EF DOWNSTREAM Acsl INTERGENIC
2R	14314172	2R_14314172_SNP [dm3] 2R_18426667_SNP [dm6]	A	G	1.622e^-4	1	START_GAINED CG12263 UTR_5_PRIME CG12263 DOWNSTREAM CG5174	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11550206	2L_11550206_SNP [dm3] 2L_11550206_SNP [dm6]	A	T	1.626e^-4	1	UPSTREAM CR44494 INTERGENIC
2L	6978273	2L_6978273_SNP [dm3] 2L_6978273_SNP [dm6]	T	A	1.654e^-4	1	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17125183	2L_17125183_SNP [dm3] 2L_17125183_SNP [dm6]	T	C	1.659e^-4	1	SYNONYMOUS_CODING CG31784
2R	17131795	2R_17131795_SNP [dm3] 2R_21244290_SNP [dm6]	T	C	1.661e^-4	1	INTRON ASPP
2L	17172355	2L_17172355_SNP [dm3] 2L_17172355_SNP [dm6]	T	C	1.662e^-4	1	UTR_3_PRIME beat-IIIa & 1 other DOWNSTREAM CG34106
2R	18066666	2R_18066666_SNP [dm3] 2R_22179161_SNP [dm6]	C	T	1.664e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	155961	2L_155961_SNP [dm3] 2L_155961_SNP [dm6]	G	T	1.665e^-4	1	UTR_3_PRIME CG11455 UPSTREAM CG3436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	17856938	2R_17856938_SNP [dm3] 2R_21969433_SNP [dm6]	A	C	1.666e^-4	1	INTRON ppk9
2L	18620745	2L_18620745_SNP [dm3] 2L_18620745_SNP [dm6]	G	A	1.676e^-4	1	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	773782	X_773782_DEL [dm3] X_879749_DEL [dm6]	GG	G	1.678e^-4	1	INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7473215	3L_7473215_SNP [dm3] 3L_7480115_SNP [dm6]	T	C	1.682e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15565968	2R_15565968_SNP [dm3] 2R_19678463_SNP [dm6]	A	G	1.695e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17741314	2R_17741314_SNP [dm3] 2R_21853809_SNP [dm6]	A	C	1.705e^-4	1	INTERGENIC
X	20396034	X_20396034_SNP [dm3] X_20525007_SNP [dm6]	G	A	1.715e^-4	1	UPSTREAM Tak1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	25912988	3R_25912988_SNP [dm3] 3R_30087266_SNP [dm6]	C	T	1.719e^-4	1	INTRON sima
3R	25912991	3R_25912991_SNP [dm3] 3R_30087269_SNP [dm6]	T	A	1.719e^-4	1	INTRON sima
2R	14396617	2R_14396617_DEL [dm3] 2R_18509112_DEL [dm6]	AAGACTCAAA	A	1.723e^-4	1	INTERGENIC
2R	19851368	2R_19851368_SNP [dm3] 2R_23963845_SNP [dm6]	G	A	1.726e^-4	1	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	17172301	2L_17172301_SNP [dm3] 2L_17172301_SNP [dm6]	G	T	1.740e^-4	1	UTR_3_PRIME beat-IIIa & 1 other DOWNSTREAM CG34106
3L	16230738	3L_16230738_SNP [dm3] 3L_16237638_SNP [dm6]	T	G	1.747e^-4	1	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
X	20228863	X_20228863_DEL [dm3] X_20357836_DEL [dm6]	GTG	G	1.747e^-4	1	INTERGENIC
3L	5127722	3L_5127722_SNP [dm3] 3L_5134622_SNP [dm6]	C	T	1.752e^-4	1	SYNONYMOUS_CODING CG4603 UPSTREAM CR45160	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9686086	2L_9686086_SNP [dm3] 2L_9686086_SNP [dm6]	G	A	1.759e^-4	1	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5944610	3L_5944610_SNP [dm3] 3L_5951510_SNP [dm6]	T	C	1.760e^-4	1	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18733878	X_18733878_SNP [dm3] X_18839845_SNP [dm6]	T	G	1.761e^-4	1	INTRON Pvf1	TF binding site mE1_TFBS_cad
2L	9685580	2L_9685580_SNP [dm3] 2L_9685580_SNP [dm6]	A	G	1.761e^-4	1	INTRON Pka-C1
3L	10757740	3L_10757740_INS [dm3] 3L_10764640_INS [dm6]	A	AA	1.781e^-4	1	INTERGENIC
X	17894139	X_17894139_SNP [dm3] X_18000106_SNP [dm6]	T	C	1.786e^-4	1	INTRON Sh
3L	10535485	3L_10535485_SNP [dm3] 3L_10542385_SNP [dm6]	T	C	1.791e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	9601966	2L_9601966_SNP [dm3] 2L_9601966_SNP [dm6]	T	A	1.791e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9601970	2L_9601970_SNP [dm3] 2L_9601970_SNP [dm6]	A	T	1.791e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7023438	3L_7023438_SNP [dm3] 3L_7030338_SNP [dm6]	T	A	1.795e^-4	1	INTRON Mp
2R	17780680	2R_17780680_SNP [dm3] 2R_21893175_SNP [dm6]	T	G	1.798e^-4	1	INTRON Fili
2R	17658579	2R_17658579_SNP [dm3] 2R_21771074_SNP [dm6]	G	C	1.814e^-4	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10297319	X_10297319_SNP [dm3] X_10403286_SNP [dm6]	A	C	1.816e^-4	1	INTRON flw
2R	16677963	2R_16677963_SNP [dm3] 2R_20790458_SNP [dm6]	A	T	1.818e^-4	1	UTR_3_PRIME CG43677 UPSTREAM CG43667
3R	22953340	3R_22953340_SNP [dm3] 3R_27127618_SNP [dm6]	G	A	1.824e^-4	1	NON_SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3924734	2L_3924734_SNP [dm3] 2L_3924734_SNP [dm6]	G	A	1.826e^-4	1	INTRON fred
2L	17695054	2L_17695054_SNP [dm3] 2L_17695054_SNP [dm6]	T	G	1.827e^-4	1	INTRON CadN
2R	16678155	2R_16678155_SNP [dm3] 2R_20790650_SNP [dm6]	T	C	1.828e^-4	1	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
X	3100551	X_3100551_SNP [dm3] X_3206518_SNP [dm6]	A	T	1.830e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9164877	2R_9164877_SNP [dm3] 2R_13277372_SNP [dm6]	C	T	1.832e^-4	1	INTRON Dh31-R
3L	6991608	3L_6991608_SNP [dm3] 3L_6998508_SNP [dm6]	A	G	1.840e^-4	1	UPSTREAM Mp INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4059339	2R_4059339_SNP [dm3] 2R_8171834_SNP [dm6]	C	T	1.846e^-4	1	SYNONYMOUS_CODING Mlh1 DOWNSTREAM CG14757	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2110564	2L_2110564_SNP [dm3] 2L_2110564_SNP [dm6]	C	T	1.889e^-4	1	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7058276	2L_7058276_SNP [dm3] 2L_7058276_SNP [dm6]	G	A	1.893e^-4	1	SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17141921	X_17141921_SNP [dm3] X_17247888_SNP [dm6]	A	G	1.895e^-4	1	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
3R	13200246	3R_13200246_INS [dm3] 3R_17374524_INS [dm6]	C	CC	1.898e^-4	1	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_inv
3L	16232077	3L_16232077_SNP [dm3] 3L_16238977_SNP [dm6]	T	C	1.900e^-4	1	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16232155	3L_16232155_SNP [dm3] 3L_16239055_SNP [dm6]	G	A	1.900e^-4	1	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15566985	2R_15566985_SNP [dm3] 2R_19679480_SNP [dm6]	T	C	1.901e^-4	1	INTERGENIC
X	3100504	X_3100504_SNP [dm3] X_3206471_SNP [dm6]	C	T	1.905e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15569955	2R_15569955_SNP [dm3] 2R_19682450_SNP [dm6]	G	C	1.907e^-4	1	UTR_3_PRIME CG34198	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21220692	X_21220692_SNP [dm3] X_21349665_SNP [dm6]	G	A	1.916e^-4	1	SYNONYMOUS_CODING pen UPSTREAM sol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17207097	X_17207097_SNP [dm3] X_17313064_SNP [dm6]	C	T	1.920e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15511398	3R_15511398_INS [dm3] 3R_19685676_INS [dm6]	A	AGATGAAAAA	1.921e^-4	1	INTRON Naam
3L	21002246	3L_21002246_SNP [dm3] 3L_21009146_SNP [dm6]	T	G	1.921e^-4	1	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14096255	2L_14096255_SNP [dm3] 2L_14096255_SNP [dm6]	T	A	1.924e^-4	1	INTERGENIC
X	6573557	X_6573557_SNP [dm3] X_6679524_SNP [dm6]	T	C	1.925e^-4	1	UPSTREAM l_1_G0255 & 1 other INTRON l_1_G0255
3R	7340839	3R_7340839_SNP [dm3] 3R_11515117_SNP [dm6]	T	C	1.944e^-4	1	INTERGENIC
3L	18010386	3L_18010386_SNP [dm3] 3L_18017286_SNP [dm6]	T	G	1.949e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	17176261	2R_17176261_SNP [dm3] 2R_21288756_SNP [dm6]	C	T	1.970e^-4	1	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	23007795	3R_23007795_SNP [dm3] 3R_27182073_SNP [dm6]	C	T	1.970e^-4	1	INTRON Ser
3L	7473242	3L_7473242_SNP [dm3] 3L_7480142_SNP [dm6]	A	T	1.982e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16659869	2R_16659869_SNP [dm3] 2R_20772364_SNP [dm6]	C	T	1.987e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16230454	3L_16230454_SNP [dm3] 3L_16237354_SNP [dm6]	T	G	1.992e^-4	1	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
3L	13772782	3L_13772782_SNP [dm3] 3L_13779682_SNP [dm6]	T	G	2.002e^-4	1	INTRON bru-3
X	6273453	X_6273453_SNP [dm3] X_6379420_SNP [dm6]	G	A	2.005e^-4	1	INTERGENIC
2L	11358853	2L_11358853_SNP [dm3] 2L_11358853_SNP [dm6]	T	C	2.025e^-4	1	UPSTREAM salr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1612479	3L_1612479_SNP [dm3] 3L_1612479_SNP [dm6]	A	C	2.035e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	10112398	2R_10112398_SNP [dm3] 2R_14224893_SNP [dm6]	A	G	2.050e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9601878	2L_9601878_SNP [dm3] 2L_9601878_SNP [dm6]	G	C	2.056e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4286731	2L_4286731_DEL [dm3] 2L_4286731_DEL [dm6]	GT	G	2.075e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14515341	3L_14515341_SNP [dm3] 3L_14522241_SNP [dm6]	A	G	2.078e^-4	1	UPSTREAM CG4613 INTRON bbg
X	14622945	X_14622945_SNP [dm3] X_14728912_SNP [dm6]	G	A	2.105e^-4	1	INTRON NetB
X	20224374	X_20224374_SNP [dm3] X_20353347_SNP [dm6]	T	C	2.113e^-4	1	INTERGENIC
3L	19427462	3L_19427462_SNP [dm3] 3L_19434362_SNP [dm6]	C	T	2.115e^-4	1	INTERGENIC
3L	16231750	3L_16231750_SNP [dm3] 3L_16238650_SNP [dm6]	T	G	2.135e^-4	1	NON_SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad
3L	5285846	3L_5285846_SNP [dm3] 3L_5292746_SNP [dm6]	G	A	2.160e^-4	1	INTERGENIC
X	17767838	X_17767838_SNP [dm3] X_17873805_SNP [dm6]	T	A	2.169e^-4	1	INTRON mnb	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17095542	X_17095542_SNP [dm3] X_17201509_SNP [dm6]	C	A	2.183e^-4	1	DOWNSTREAM baz INTRON CG8918
X	3100510	X_3100510_SNP [dm3] X_3206477_SNP [dm6]	C	T	2.183e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3100535	X_3100535_SNP [dm3] X_3206502_SNP [dm6]	C	G	2.183e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19067439	2R_19067439_SNP [dm3] 2R_23179916_SNP [dm6]	C	G	2.191e^-4	1	INTRON CG34371
2L	14430406	2L_14430406_SNP [dm3] 2L_14430406_SNP [dm6]	T	C	2.200e^-4	1	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9844279	2L_9844279_SNP [dm3] 2L_9844279_SNP [dm6]	A	G	2.206e^-4	1	INTRON nAChRalpha6
2R	8590164	2R_8590164_SNP [dm3] 2R_12702659_SNP [dm6]	A	T	2.207e^-4	1	INTERGENIC
X	12998880	X_12998880_SNP [dm3] X_13104847_SNP [dm6]	T	A	2.224e^-4	1	INTRON CG43313
3L	1543917	3L_1543917_SNP [dm3] 3L_1543917_SNP [dm6]	T	C	2.232e^-4	1	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17967963	3R_17967963_SNP [dm3] 3R_22142241_SNP [dm6]	A	T	2.245e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
X	17893396	X_17893396_SNP [dm3] X_17999363_SNP [dm6]	C	A	2.248e^-4	1	INTRON Sh
X	17894056	X_17894056_SNP [dm3] X_18000023_SNP [dm6]	G	A	2.248e^-4	1	INTRON Sh
X	17895331	X_17895331_SNP [dm3] X_18001298_SNP [dm6]	T	C	2.248e^-4	1	INTRON Sh
X	17895341	X_17895341_SNP [dm3] X_18001308_SNP [dm6]	C	T	2.248e^-4	1	INTRON Sh
X	17895374	X_17895374_SNP [dm3] X_18001341_SNP [dm6]	G	A	2.248e^-4	1	INTRON Sh
X	17896384	X_17896384_SNP [dm3] X_18002351_SNP [dm6]	T	C	2.248e^-4	1	INTRON Sh
X	12514596	X_12514596_SNP [dm3] X_12620563_SNP [dm6]	A	T	2.249e^-4	1	INTRON CG11085
3L	9723752	3L_9723752_SNP [dm3] 3L_9730652_SNP [dm6]	C	T	2.249e^-4	1	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17775177	2R_17775177_SNP [dm3] 2R_21887672_SNP [dm6]	G	A	2.252e^-4	1	INTRON Fili
2R	19179384	2R_19179384_SNP [dm3] 2R_23291861_SNP [dm6]	C	T	2.252e^-4	1	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14096261	2L_14096261_SNP [dm3] 2L_14096261_SNP [dm6]	C	A	2.258e^-4	1	INTERGENIC
2R	16491107	2R_16491107_SNP [dm3] 2R_20603602_SNP [dm6]	G	A	2.268e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11361928	3L_11361928_SNP [dm3] 3L_11368828_SNP [dm6]	A	T	2.283e^-4	1	INTERGENIC
X	10394452	X_10394452_SNP [dm3] X_10500419_SNP [dm6]	A	T	2.286e^-4	1	INTRON spri
3L	5317146	3L_5317146_SNP [dm3] 3L_5324046_SNP [dm6]	C	G	2.289e^-4	1	INTERGENIC
2L	13330154	2L_13330154_INS [dm3] 2L_13330154_INS [dm6]	A	AA	2.292e^-4	1	INTRON CG43778
2L	13330156	2L_13330156_SNP [dm3] 2L_13330156_SNP [dm6]	A	T	2.292e^-4	1	INTRON CG43778
2L	13330159	2L_13330159_SNP [dm3] 2L_13330159_SNP [dm6]	T	A	2.292e^-4	1	INTRON CG43778
3L	15970484	3L_15970484_SNP [dm3] 3L_15977384_SNP [dm6]	A	C	2.295e^-4	1	SYNONYMOUS_CODING CG17029 DOWNSTREAM CG17026 INTRON brm
2L	3800587	2L_3800587_SNP [dm3] 2L_3800587_SNP [dm6]	C	T	2.303e^-4	1	SYNONYMOUS_CODING CG3921
3L	1612481	3L_1612481_SNP [dm3] 3L_1612481_SNP [dm6]	T	A	2.307e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	13330153	2L_13330153_SNP [dm3] 2L_13330153_SNP [dm6]	T	G	2.318e^-4	1	INTRON CG43778
2L	3182701	2L_3182701_SNP [dm3] 2L_3182701_SNP [dm6]	T	C	2.321e^-4	1	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16104067	X_16104067_SNP [dm3] X_16210034_SNP [dm6]	G	T	2.325e^-4	1	DOWNSTREAM disco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5347326	2R_5347326_SNP [dm3] 2R_9459821_SNP [dm6]	A	T	2.325e^-4	1	INTRON Camta	TF binding site mE1_TFBS_inv
X	3100519	X_3100519_SNP [dm3] X_3206486_SNP [dm6]	A	G	2.330e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5671425	2L_5671425_SNP [dm3] 2L_5671425_SNP [dm6]	C	T	2.349e^-4	1	DOWNSTREAM Hsp60C INTERGENIC
3R	10953157	3R_10953157_SNP [dm3] 3R_15127435_SNP [dm6]	C	T	2.356e^-4	1	INTRON CG42788
3L	10266088	3L_10266088_SNP [dm3] 3L_10272988_SNP [dm6]	C	G	2.357e^-4	1	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	24839085	3R_24839085_SNP [dm3] 3R_29013363_SNP [dm6]	G	A	2.359e^-4	1	INTRON wat
3L	13768010	3L_13768010_SNP [dm3] 3L_13774910_SNP [dm6]	C	G	2.369e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	6322980	3R_6322980_DEL [dm3] 3R_10497258_DEL [dm6]	CT	C	2.370e^-4	1	INTERGENIC
3L	10238327	3L_10238327_SNP [dm3] 3L_10245227_SNP [dm6]	A	T	2.373e^-4	1	UPSTREAM Or67c INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	20396045	X_20396045_SNP [dm3] X_20525018_SNP [dm6]	C	T	2.382e^-4	1	UPSTREAM Tak1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	14156232	2R_14156232_SNP [dm3] 2R_18268727_SNP [dm6]	A	G	2.400e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21655470	3R_21655470_SNP [dm3] 3R_25829748_SNP [dm6]	G	C	2.405e^-4	1	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
2L	6213760	2L_6213760_SNP [dm3] 2L_6213760_SNP [dm6]	C	T	2.408e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	12367636	2R_12367636_SNP [dm3] 2R_16480131_SNP [dm6]	T	C	2.421e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10092146	2L_10092146_SNP [dm3] 2L_10092146_SNP [dm6]	C	G	2.433e^-4	1	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo
3L	13767082	3L_13767082_SNP [dm3] 3L_13773982_SNP [dm6]	A	G	2.437e^-4	1	INTRON bru-3
X	5304448	X_5304448_SNP [dm3] X_5410415_SNP [dm6]	T	C	2.437e^-4	1	INTRON NAAT1
3L	5362953	3L_5362953_SNP [dm3] 3L_5369853_SNP [dm6]	G	C	2.438e^-4	1	EXON CR44515
3R	17968026	3R_17968026_SNP [dm3] 3R_22142304_SNP [dm6]	G	A	2.442e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14533648	3L_14533648_SNP [dm3] 3L_14540548_SNP [dm6]	A	T	2.444e^-4	1	DOWNSTREAM CG9238 & 1 other INTERGENIC
3L	14503837	3L_14503837_SNP [dm3] 3L_14510737_SNP [dm6]	T	C	2.454e^-4	1	UPSTREAM bbg INTRON bbg
X	17141952	X_17141952_INS [dm3] X_17247919_INS [dm6]	T	TAATT	2.457e^-4	1	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
3L	16278883	3L_16278883_DEL [dm3] 3L_16285783_DEL [dm6]	ATA	A	2.469e^-4	1	UPSTREAM CG13047 INTERGENIC
3L	16279016	3L_16279016_SNP [dm3] 3L_16285916_SNP [dm6]	A	G	2.469e^-4	1	UPSTREAM CG13047 INTERGENIC
2L	5675677	2L_5675677_SNP [dm3] 2L_5675677_SNP [dm6]	C	A	2.491e^-4	1	INTERGENIC
3L	14502901	3L_14502901_SNP [dm3] 3L_14509801_SNP [dm6]	C	T	2.493e^-4	1	NON_SYNONYMOUS_CODING bbg
3L	12172173	3L_12172173_SNP [dm3] 3L_12179073_SNP [dm6]	G	A	2.498e^-4	1	UPSTREAM CAH2 INTRON CAH2
3L	2189841	3L_2189841_SNP [dm3] 3L_2189841_SNP [dm6]	G	A	2.507e^-4	1	SYNONYMOUS_CODING CG5707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	79657	2L_79657_SNP [dm3] 2L_79657_SNP [dm6]	G	C	2.510e^-4	1	INTERGENIC
3L	2630746	3L_2630746_SNP [dm3] 3L_2630746_SNP [dm6]	T	G	2.511e^-4	1	UPSTREAM Pxn & 3 others INTERGENIC
X	17142169	X_17142169_SNP [dm3] X_17248136_SNP [dm6]	T	G	2.513e^-4	1	DOWNSTREAM CG8675 INTRON f
3L	16721454	3L_16721454_INS [dm3] 3L_16728354_INS [dm6]	T	AG	2.515e^-4	1	UPSTREAM PGRP-SB1 DOWNSTREAM Dbp73D INTERGENIC	regulatory region REDfly_CRMs
3L	19446963	3L_19446963_SNP [dm3] 3L_19453863_SNP [dm6]	G	A	2.518e^-4	1	UPSTREAM CR45434 INTERGENIC
X	4290170	X_4290170_SNP [dm3] X_4396137_SNP [dm6]	G	A	2.518e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	67830	2L_67830_SNP [dm3] 2L_67830_SNP [dm6]	T	G	2.530e^-4	1	INTRON dbr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	1193958	2L_1193958_SNP [dm3] 2L_1193958_SNP [dm6]	T	A	2.533e^-4	1	INTRON CG5001
3L	11388089	3L_11388089_SNP [dm3] 3L_11394989_SNP [dm6]	C	T	2.538e^-4	1	SYNONYMOUS_CODING CG11726
2R	10588181	2R_10588181_SNP [dm3] 2R_14700676_SNP [dm6]	T	C	2.555e^-4	1	INTRON mspo
2L	14096294	2L_14096294_SNP [dm3] 2L_14096294_SNP [dm6]	G	C	2.555e^-4	1	INTERGENIC
3L	9725138	3L_9725138_SNP [dm3] 3L_9732038_SNP [dm6]	G	A	2.557e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9725142	3L_9725142_SNP [dm3] 3L_9732042_SNP [dm6]	A	T	2.557e^-4	1	NON_SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9725159	3L_9725159_SNP [dm3] 3L_9732059_SNP [dm6]	G	A	2.557e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13772758	3L_13772758_SNP [dm3] 3L_13779658_SNP [dm6]	T	A	2.572e^-4	1	INTRON bru-3
3L	11386430	3L_11386430_SNP [dm3] 3L_11393330_SNP [dm6]	A	G	2.575e^-4	1	INTERGENIC
3L	13772749	3L_13772749_DEL [dm3] 3L_13779649_DEL [dm6]	CCAAA	T	2.578e^-4	1	INTRON bru-3
2R	15574818	2R_15574818_SNP [dm3] 2R_19687313_SNP [dm6]	T	C	2.579e^-4	1	INTRON CG15128	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18498219	3L_18498219_SNP [dm3] 3L_18505119_SNP [dm6]	A	G	2.587e^-4	1	INTERGENIC
3R	2519751	3R_2519751_DEL [dm3] 3R_6694029_DEL [dm6]	TATC	G	2.592e^-4	1	DOWNSTREAM Ccp84Ad INTERGENIC
X	19039819	X_19039819_SNP [dm3] X_19145786_SNP [dm6]	C	T	2.594e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	6826791	X_6826791_SNP [dm3] X_6932758_SNP [dm6]	G	C	2.597e^-4	1	INTRON CG14431
X	20396036	X_20396036_SNP [dm3] X_20525009_SNP [dm6]	A	G	2.616e^-4	1	UPSTREAM Tak1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	7587476	2L_7587476_SNP [dm3] 2L_7587476_SNP [dm6]	C	A	2.617e^-4	1	INTERGENIC
3L	11249597	3L_11249597_SNP [dm3] 3L_11256497_SNP [dm6]	T	C	2.618e^-4	1	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6735928	2L_6735928_SNP [dm3] 2L_6735928_SNP [dm6]	T	C	2.622e^-4	1	DOWNSTREAM TTLL3A INTRON TTLL3B
2L	15943971	2L_15943971_SNP [dm3] 2L_15943971_SNP [dm6]	C	G	2.631e^-4	1	INTRON beat-Ib
3L	12269956	3L_12269956_SNP [dm3] 3L_12276856_SNP [dm6]	T	C	2.639e^-4	1	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	16725379	3L_16725379_SNP [dm3] 3L_16732279_SNP [dm6]	T	A	2.647e^-4	1	INTERGENIC
2R	18117044	2R_18117044_DEL [dm3] 2R_22229539_DEL [dm6]	ATA	A	2.663e^-4	1	UPSTREAM Oatp58Dc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19215693	3L_19215693_SNP [dm3] 3L_19222593_SNP [dm6]	G	C	2.683e^-4	1	INTRON fz2
2L	15193845	2L_15193845_SNP [dm3] 2L_15193845_SNP [dm6]	T	A	2.695e^-4	1	INTRON CG4168
3L	2289627	3L_2289627_SNP [dm3] 3L_2289627_SNP [dm6]	G	A	2.702e^-4	1	INTRON MsR2
3L	7475787	3L_7475787_SNP [dm3] 3L_7482687_SNP [dm6]	C	A	2.708e^-4	1	INTERGENIC
X	20396003	X_20396003_SNP [dm3] X_20524976_SNP [dm6]	T	C	2.731e^-4	1	UPSTREAM Tak1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	23226933	3L_23226933_SNP [dm3] 3L_23233833_SNP [dm6]	C	A	2.733e^-4	1	INTRON nAChRalpha4
3L	11786779	3L_11786779_SNP [dm3] 3L_11793679_SNP [dm6]	G	C	2.733e^-4	1	SYNONYMOUS_CODING CG10907 UPSTREAM CG5964	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11926134	2L_11926134_SNP [dm3] 2L_11926134_SNP [dm6]	A	G	2.737e^-4	1	INTRON Pde1c
3L	16235182	3L_16235182_SNP [dm3] 3L_16242082_SNP [dm6]	C	G	2.745e^-4	1	INTERGENIC
3L	16237792	3L_16237792_SNP [dm3] 3L_16244692_SNP [dm6]	G	A	2.745e^-4	1	INTERGENIC
3L	16237843	3L_16237843_SNP [dm3] 3L_16244743_SNP [dm6]	A	T	2.745e^-4	1	INTERGENIC
3L	17188682	3L_17188682_SNP [dm3] 3L_17195582_SNP [dm6]	C	G	2.746e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	5332452	2L_5332452_SNP [dm3] 2L_5332452_SNP [dm6]	C	T	2.770e^-4	1	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12582306	2L_12582306_SNP [dm3] 2L_12582306_SNP [dm6]	C	T	2.770e^-4	1	UPSTREAM CR44595 EXON CR44596
3L	5305270	3L_5305270_SNP [dm3] 3L_5312170_SNP [dm6]	C	T	2.772e^-4	1	INTERGENIC
2R	20414988	2R_20414988_DEL [dm3] 2R_24527465_DEL [dm6]	AGTTAAA	A	2.776e^-4	1	CODON_DELETION Brca2
3L	21759578	3L_21759578_SNP [dm3] 3L_21766478_SNP [dm6]	C	A	2.780e^-4	1	UPSTREAM CG42689 INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14883638	3L_14883638_INS [dm3] 3L_14890538_INS [dm6]	T	TG	2.797e^-4	1	UPSTREAM CR45398 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17691520	3R_17691520_SNP [dm3] 3R_21865798_SNP [dm6]	C	T	2.799e^-4	1	DOWNSTREAM CG6569 INTRON lsn	TF binding site mE1_TFBS_sens
3L	11460246	3L_11460246_DEL [dm3] 3L_11467146_DEL [dm6]	AA	A	2.812e^-4	1	INTERGENIC
X	20360340	X_20360340_SNP [dm3] X_20489313_SNP [dm6]	A	C	2.813e^-4	1	INTRON RhoGAP19D	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	15526295	3R_15526295_SNP [dm3] 3R_19700573_SNP [dm6]	T	C	2.818e^-4	1	INTERGENIC
2R	17638309	2R_17638309_SNP [dm3] 2R_21750804_SNP [dm6]	G	T	2.824e^-4	1	INTERGENIC
2L	1118044	2L_1118044_SNP [dm3] 2L_1118044_SNP [dm6]	C	T	2.826e^-4	1	INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19488223	3L_19488223_SNP [dm3] 3L_19495123_SNP [dm6]	C	T	2.835e^-4	1	INTRON CG9449
2L	10609541	2L_10609541_SNP [dm3] 2L_10609541_SNP [dm6]	T	A	2.836e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2951290	2R_2951290_SNP [dm3] 2R_7063785_SNP [dm6]	T	C	2.839e^-4	1	UPSTREAM Tsp42Er & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19899722	2R_19899722_SNP [dm3] 2R_24012199_SNP [dm6]	G	A	2.843e^-4	1	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3L	16237773	3L_16237773_SNP [dm3] 3L_16244673_SNP [dm6]	C	T	2.848e^-4	1	INTERGENIC
X	13282943	X_13282943_SNP [dm3] X_13388910_SNP [dm6]	A	G	2.849e^-4	1	UTR_3_PRIME CG1662 DOWNSTREAM CG1662	TF binding site mE1_TFBS_cad
3L	6677838	3L_6677838_SNP [dm3] 3L_6684738_SNP [dm6]	C	T	2.854e^-4	1	INTERGENIC
3R	11269036	3R_11269036_SNP [dm3] 3R_15443314_SNP [dm6]	T	A	2.868e^-4	1	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3R	14249402	3R_14249402_SNP [dm3] 3R_18423680_SNP [dm6]	G	A	2.869e^-4	1	INTRON fru
X	14622935	X_14622935_SNP [dm3] X_14728902_SNP [dm6]	T	G	2.873e^-4	1	INTRON NetB
2R	14313729	2R_14313729_SNP [dm3] 2R_18426224_SNP [dm6]	A	G	2.875e^-4	1	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15091270	3R_15091270_SNP [dm3] 3R_19265548_SNP [dm6]	C	T	2.877e^-4	1	INTERGENIC
2L	3925310	2L_3925310_SNP [dm3] 2L_3925310_SNP [dm6]	T	C	2.890e^-4	1	INTRON fred
3L	12380983	3L_12380983_SNP [dm3] 3L_12387883_SNP [dm6]	A	G	2.899e^-4	1	START_GAINED Ncc69 UTR_5_PRIME Ncc69 INTRON Ncc69
X	6273436	X_6273436_SNP [dm3] X_6379403_SNP [dm6]	T	C	2.900e^-4	1	INTERGENIC
2L	5333111	2L_5333111_SNP [dm3] 2L_5333111_SNP [dm6]	C	T	2.901e^-4	1	INTRON fusl	TF binding site mE1_TFBS_cad
2R	18931389	2R_18931389_SNP [dm3] 2R_23043866_SNP [dm6]	A	T	2.907e^-4	1	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13282970	X_13282970_SNP [dm3] X_13388937_SNP [dm6]	G	T	2.919e^-4	1	UTR_3_PRIME CG1662 DOWNSTREAM CG1662	TF binding site mE1_TFBS_cad
3L	19492320	3L_19492320_SNP [dm3] 3L_19499220_SNP [dm6]	T	A	2.948e^-4	1	INTRON CG9451
3L	16866075	3L_16866075_SNP [dm3] 3L_16872975_SNP [dm6]	T	A	2.949e^-4	1	INTRON Lmpt
2R	10112385	2R_10112385_SNP [dm3] 2R_14224880_SNP [dm6]	C	G	2.950e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16279702	3L_16279702_SNP [dm3] 3L_16286602_SNP [dm6]	G	C	2.951e^-4	1	DOWNSTREAM CG13046 INTERGENIC
3L	3772201	3L_3772201_SNP [dm3] 3L_3772201_SNP [dm6]	G	T	2.952e^-4	1	INTRON CG32264
3R	6313367	3R_6313367_DEL [dm3] 3R_10487645_DEL [dm6]	CCCCATAATATCCACTCCGA...	C	2.954e^-4	1	DOWNSTREAM CR45576 INTERGENIC
3L	5788305	3L_5788305_SNP [dm3] 3L_5795205_SNP [dm6]	T	G	2.963e^-4	1	INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12704511	2R_12704511_SNP [dm3] 2R_16817006_SNP [dm6]	G	A	2.982e^-4	1	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14415662	2L_14415662_SNP [dm3] 2L_14415662_SNP [dm6]	T	C	2.987e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11400007	2L_11400007_SNP [dm3] 2L_11400007_SNP [dm6]	T	A	2.987e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	4899305	2L_4899305_SNP [dm3] 2L_4899305_SNP [dm6]	T	C	3.011e^-4	1	INTRON CG3036
3L	18141678	3L_18141678_SNP [dm3] 3L_18148578_SNP [dm6]	T	C	3.015e^-4	1	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11927812	2L_11927812_SNP [dm3] 2L_11927812_SNP [dm6]	A	G	3.024e^-4	1	INTRON Pde1c
X	15965609	X_15965609_SNP [dm3] X_16071576_SNP [dm6]	G	A	3.027e^-4	1	INTRON Nipsnap
3L	2702612	3L_2702612_SNP [dm3] 3L_2702612_SNP [dm6]	T	A	3.030e^-4	1	INTRON Fife
2R	9218988	2R_9218988_SNP [dm3] 2R_13331483_SNP [dm6]	C	T	3.034e^-4	1	INTRON CR44206	TF binding site mE1_TFBS_cad
X	2366352	X_2366352_INS [dm3] X_2472319_INS [dm6]	C	CTAC	3.044e^-4	1	INTRON trol
X	17891110	X_17891110_SNP [dm3] X_17997077_SNP [dm6]	A	G	3.045e^-4	1	INTRON Sh
3L	9499529	3L_9499529_SNP [dm3] 3L_9506429_SNP [dm6]	A	T	3.049e^-4	1	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17658429	2R_17658429_SNP [dm3] 2R_21770924_SNP [dm6]	G	A	3.056e^-4	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1612263	3L_1612263_SNP [dm3] 3L_1612263_SNP [dm6]	C	G	3.060e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	17896955	X_17896955_SNP [dm3] X_18002922_SNP [dm6]	A	T	3.067e^-4	1	INTRON Sh
2L	1950641	2L_1950641_SNP [dm3] 2L_1950641_SNP [dm6]	C	T	3.082e^-4	1	UTR_3_PRIME erm	TF binding site mE1_TFBS_chinmo
3L	16237779	3L_16237779_SNP [dm3] 3L_16244679_SNP [dm6]	A	T	3.084e^-4	1	INTERGENIC
3L	16237798	3L_16237798_SNP [dm3] 3L_16244698_SNP [dm6]	T	G	3.084e^-4	1	INTERGENIC
3L	10235450	3L_10235450_SNP [dm3] 3L_10242350_SNP [dm6]	T	C	3.121e^-4	1	DOWNSTREAM CR44541 & 1 other INTERGENIC
2R	15565969	2R_15565969_SNP [dm3] 2R_19678464_SNP [dm6]	G	C	3.127e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16273358	3L_16273358_SNP [dm3] 3L_16280258_SNP [dm6]	C	T	3.127e^-4	1	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
2R	8951362	2R_8951362_SNP [dm3] 2R_13063857_SNP [dm6]	A	G	3.127e^-4	1	INTRON Drl-2
2L	15937236	2L_15937236_SNP [dm3] 2L_15937236_SNP [dm6]	G	A	3.131e^-4	1	INTRON beat-Ib
3L	14502886	3L_14502886_SNP [dm3] 3L_14509786_SNP [dm6]	C	T	3.136e^-4	1	NON_SYNONYMOUS_CODING bbg
3L	2983812	3L_2983812_SNP [dm3] 3L_2983812_SNP [dm6]	T	C	3.152e^-4	1	DOWNSTREAM CG2107 INTERGENIC
3L	2343047	3L_2343047_SNP [dm3] 3L_2343047_SNP [dm6]	T	C	3.158e^-4	1	SYNONYMOUS_CODING MsR1
3L	1778398	3L_1778398_SNP [dm3] 3L_1778398_SNP [dm6]	C	T	3.158e^-4	1	UPSTREAM CG2021 DOWNSTREAM alpha-Spec & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10266036	3L_10266036_SNP [dm3] 3L_10272936_SNP [dm6]	T	C	3.160e^-4	1	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	18690165	3L_18690165_SNP [dm3] 3L_18697065_SNP [dm6]	A	T	3.166e^-4	1	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
X	17896612	X_17896612_SNP [dm3] X_18002579_SNP [dm6]	G	A	3.173e^-4	1	INTRON Sh
3R	10942383	3R_10942383_SNP [dm3] 3R_15116661_SNP [dm6]	C	A	3.177e^-4	1	INTRON CG42788	TF binding site mE1_TFBS_sens
3R	13220202	3R_13220202_SNP [dm3] 3R_17394480_SNP [dm6]	T	C	3.192e^-4	1	UPSTREAM CREG DOWNSTREAM Sur-8 INTRON CREG	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1214723	2L_1214723_SNP [dm3] 2L_1214723_SNP [dm6]	C	A	3.205e^-4	1	EXON CR45346
3R	12688653	3R_12688653_SNP [dm3] 3R_16862931_SNP [dm6]	C	T	3.213e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	11116792	3R_11116792_SNP [dm3] 3R_15291070_SNP [dm6]	C	T	3.222e^-4	1	UTR_5_PRIME Tm1 UPSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9514782	X_9514782_SNP [dm3] X_9620749_SNP [dm6]	T	C	3.223e^-4	1	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18481640	2R_18481640_SNP [dm3] 2R_22594135_SNP [dm6]	T	C	3.232e^-4	1	UPSTREAM CG3927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21725536	2L_21725536_SNP [dm3] 2L_21725536_SNP [dm6]	A	G	3.232e^-4	1	INTRON CG31619	transposable element FlyBase
3L	9726443	3L_9726443_SNP [dm3] 3L_9733343_SNP [dm6]	G	A	3.250e^-4	1	SPLICE_SITE_REGION CG6749 SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
3L	6631621	3L_6631621_SNP [dm3] 3L_6638521_SNP [dm6]	G	T	3.251e^-4	1	INTERGENIC
3R	13220454	3R_13220454_DEL [dm3] 3R_17394732_DEL [dm6]	CAGT	C	3.251e^-4	1	UPSTREAM CREG DOWNSTREAM Sur-8 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25296208	3R_25296208_SNP [dm3] 3R_29470486_SNP [dm6]	T	C	3.255e^-4	1	INTRON Ptp99A
3L	18061164	3L_18061164_SNP [dm3] 3L_18068064_SNP [dm6]	A	C	3.262e^-4	1	DOWNSTREAM CG44006 INTERGENIC
3L	1612286	3L_1612286_SNP [dm3] 3L_1612286_SNP [dm6]	T	C	3.265e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4095270	2R_4095270_SNP [dm3] 2R_8207765_SNP [dm6]	G	A	3.290e^-4	1	INTRON LRP1
X	17142187	X_17142187_INS [dm3] X_17248154_INS [dm6]	A	ACAA	3.291e^-4	1	DOWNSTREAM CG8675 INTRON f
3L	14460656	3L_14460656_INS [dm3] 3L_14467556_INS [dm6]	G	GCG	3.292e^-4	1	INTRON bbg
X	17891339	X_17891339_SNP [dm3] X_17997306_SNP [dm6]	A	T	3.316e^-4	1	INTRON Sh
3L	9725492	3L_9725492_SNP [dm3] 3L_9732392_SNP [dm6]	T	G	3.318e^-4	1	SYNONYMOUS_CODING CG6749	TF binding site mE1_TFBS_cad
3L	19502460	3L_19502460_SNP [dm3] 3L_19509360_SNP [dm6]	G	C	3.320e^-4	1	INTERGENIC
3L	23166553	3L_23166553_SNP [dm3] 3L_23173453_SNP [dm6]	A	G	3.320e^-4	1	INTERGENIC
3R	15450179	3R_15450179_SNP [dm3] 3R_19624457_SNP [dm6]	A	G	3.333e^-4	1	UTR_5_PRIME CG6231 UPSTREAM CG6231 INTRON CG6231
3R	15452835	3R_15452835_SNP [dm3] 3R_19627113_SNP [dm6]	C	A	3.333e^-4	1	INTRON CG6231
X	20130910	X_20130910_SNP [dm3] X_20259884_SNP [dm6]	T	A	3.337e^-4	1	DOWNSTREAM CG42577 INTERGENIC
X	9240482	X_9240482_SNP [dm3] X_9346449_SNP [dm6]	A	T	3.341e^-4	1	INTRON CG34449
2L	19835546	2L_19835546_SNP [dm3] 2L_19835546_SNP [dm6]	G	C	3.344e^-4	1	INTRON sick
X	12360960	X_12360960_INS [dm3] X_12466927_INS [dm6]	T	TT	3.363e^-4	1	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14788927	X_14788927_SNP [dm3] X_14894894_SNP [dm6]	C	T	3.377e^-4	1	INTRON Flo2 & 1 other
2R	4879898	2R_4879898_DEL [dm3] 2R_8992393_DEL [dm6]	AATTCGTGTAA...	A	3.385e^-4	1	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19662904	2R_19662904_SNP [dm3] 2R_23775381_SNP [dm6]	T	G	3.388e^-4	1	INTRON CG9850
2L	9601730	2L_9601730_SNP [dm3] 2L_9601730_SNP [dm6]	T	C	3.389e^-4	1	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18926968	X_18926968_SNP [dm3] X_19032935_SNP [dm6]	A	G	3.393e^-4	1	INTERGENIC
X	17893668	X_17893668_SNP [dm3] X_17999635_SNP [dm6]	T	G	3.398e^-4	1	INTRON Sh
2L	4732780	2L_4732780_SNP [dm3] 2L_4732780_SNP [dm6]	T	C	3.408e^-4	1	SYNONYMOUS_CODING CG15631
2L	526662	2L_526662_SNP [dm3] 2L_526662_SNP [dm6]	C	T	3.408e^-4	1	INTRON ush	regulatory region REDfly_CRMs
2R	13734037	2R_13734037_DEL [dm3] 2R_17846532_DEL [dm6]	TACGCT	T	3.410e^-4	1	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	23225071	3L_23225071_SNP [dm3] 3L_23231971_SNP [dm6]	C	T	3.432e^-4	1	INTRON nAChRalpha4
3L	16237776	3L_16237776_SNP [dm3] 3L_16244676_SNP [dm6]	C	T	3.441e^-4	1	INTERGENIC
2R	17256054	2R_17256054_SNP [dm3] 2R_21368549_SNP [dm6]	G	A	3.443e^-4	1	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15512374	3R_15512374_SNP [dm3] 3R_19686652_SNP [dm6]	T	A	3.444e^-4	1	UPSTREAM Naam INTRON Naam
2R	2908055	2R_2908055_SNP [dm3] 2R_7020550_SNP [dm6]	A	G	3.446e^-4	1	NON_SYNONYMOUS_CODING CG43647
2R	15242379	2R_15242379_SNP [dm3] 2R_19354874_SNP [dm6]	G	A	3.449e^-4	1	INTRON Rgk1
3L	3855132	3L_3855132_SNP [dm3] 3L_3855132_SNP [dm6]	G	T	3.457e^-4	1	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	10108901	2R_10108901_SNP [dm3] 2R_14221396_SNP [dm6]	T	A	3.458e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14733332	2L_14733332_SNP [dm3] 2L_14733332_SNP [dm6]	G	A	3.478e^-4	1	UPSTREAM CR44857 INTERGENIC
3L	9725165	3L_9725165_SNP [dm3] 3L_9732065_SNP [dm6]	T	C	3.481e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16231246	2R_16231246_SNP [dm3] 2R_20343741_SNP [dm6]	G	C	3.482e^-4	1	UPSTREAM CG13870 DOWNSTREAM CG16739 INTERGENIC
2L	13225750	2L_13225750_SNP [dm3] 2L_13225750_SNP [dm6]	T	G	3.483e^-4	1	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	16280966	3L_16280966_SNP [dm3] 3L_16287866_SNP [dm6]	G	T	3.484e^-4	1	NON_SYNONYMOUS_CODING CG13046
3L	20023660	3L_20023660_SNP [dm3] 3L_20030560_SNP [dm6]	T	C	3.485e^-4	1	INTERGENIC
3L	16278213	3L_16278213_SNP [dm3] 3L_16285113_SNP [dm6]	G	A	3.515e^-4	1	SYNONYMOUS_CODING CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8641422	3L_8641422_SNP [dm3] 3L_8648322_SNP [dm6]	C	T	3.520e^-4	1	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	797896	3L_797896_SNP [dm3] 3L_797896_SNP [dm6]	A	T	3.522e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	23176532	3L_23176532_SNP [dm3] 3L_23183432_SNP [dm6]	T	C	3.522e^-4	1	DOWNSTREAM CR43967 INTRON CG34031	TF binding site mE1_TFBS_HSA
3L	16669409	3L_16669409_DEL [dm3] 3L_16676309_DEL [dm6]	AA	A	3.526e^-4	1	DOWNSTREAM Lasp & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	21965815	3L_21965815_SNP [dm3] 3L_21972715_SNP [dm6]	G	A	3.530e^-4	1	INTRON CG7470
2L	3899552	2L_3899552_SNP [dm3] 2L_3899552_SNP [dm6]	C	T	3.533e^-4	1	INTRON capu
3L	7473155	3L_7473155_DEL [dm3] 3L_7480055_DEL [dm6]	CAGTATCT	C	3.569e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	9473860	X_9473860_SNP [dm3] X_9579827_SNP [dm6]	A	T	3.580e^-4	1	UTR_5_PRIME CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15528923	3R_15528923_SNP [dm3] 3R_19703201_SNP [dm6]	G	T	3.585e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13525315	X_13525315_SNP [dm3] X_13631282_SNP [dm6]	T	C	3.586e^-4	1	INTRON NFAT
3L	19427938	3L_19427938_SNP [dm3] 3L_19434838_SNP [dm6]	G	A	3.588e^-4	1	INTERGENIC
2R	13906266	2R_13906266_DEL [dm3] 2R_18018761_DEL [dm6]	ATAGCGTATA	A	3.590e^-4	1	INTRON CG5084
2L	17582275	2L_17582275_SNP [dm3] 2L_17582275_SNP [dm6]	A	G	3.592e^-4	1	INTERGENIC
3R	17274504	3R_17274504_DEL [dm3] 3R_21448782_DEL [dm6]	CTTATGAAGTCCTTTCAC...	C	3.594e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16115800	2R_16115800_SNP [dm3] 2R_20228295_SNP [dm6]	C	T	3.595e^-4	1	INTERGENIC
2L	3548324	2L_3548324_SNP [dm3] 2L_3548324_SNP [dm6]	C	T	3.601e^-4	1	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13625455	2R_13625455_SNP [dm3] 2R_17737950_SNP [dm6]	T	A	3.612e^-4	1	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
2R	6254512	2R_6254512_SNP [dm3] 2R_10367007_SNP [dm6]	C	G	3.619e^-4	1	INTRON CG42732
3L	2164106	3L_2164106_SNP [dm3] 3L_2164106_SNP [dm6]	C	T	3.624e^-4	1	UPSTREAM CG15822 INTERGENIC
X	7679159	X_7679159_SNP [dm3] X_7785126_SNP [dm6]	C	T	3.631e^-4	1	INTERGENIC
3L	8795185	3L_8795185_SNP [dm3] 3L_8802085_SNP [dm6]	G	T	3.631e^-4	1	UPSTREAM CG34426 INTRON CG13311
2R	19065412	2R_19065412_SNP [dm3] 2R_23177889_SNP [dm6]	A	C	3.633e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2R	16662928	2R_16662928_SNP [dm3] 2R_20775423_SNP [dm6]	A	G	3.637e^-4	1	DOWNSTREAM CG43709 & 1 other INTERGENIC
2R	16663639	2R_16663639_SNP [dm3] 2R_20776134_SNP [dm6]	C	G	3.637e^-4	1	NON_SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
2R	16664010	2R_16664010_SNP [dm3] 2R_20776505_SNP [dm6]	A	T	3.637e^-4	1	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
2R	16664718	2R_16664718_SNP [dm3] 2R_20777213_SNP [dm6]	C	T	3.637e^-4	1	SYNONYMOUS_CODING CG43710 UPSTREAM CG43709
2R	16666152	2R_16666152_SNP [dm3] 2R_20778647_SNP [dm6]	G	A	3.637e^-4	1	NON_SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
2R	16666525	2R_16666525_SNP [dm3] 2R_20779020_SNP [dm6]	T	C	3.637e^-4	1	SYNONYMOUS_CODING CG43711
2R	16667629	2R_16667629_SNP [dm3] 2R_20780124_SNP [dm6]	G	C	3.637e^-4	1	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2R	16670358	2R_16670358_SNP [dm3] 2R_20782853_SNP [dm6]	T	G	3.637e^-4	1	INTERGENIC
X	14788924	X_14788924_SNP [dm3] X_14894891_SNP [dm6]	G	A	3.639e^-4	1	INTRON Flo2 & 1 other
2L	2318655	2L_2318655_INS [dm3] 2L_2318655_INS [dm6]	A	AA	3.642e^-4	1	INTRON CG9967 & 1 other
3L	1612135	3L_1612135_SNP [dm3] 3L_1612135_SNP [dm6]	A	C	3.648e^-4	1	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1825165	3L_1825165_SNP [dm3] 3L_1825165_SNP [dm6]	C	T	3.650e^-4	1	NON_SYNONYMOUS_CODING Cpr62Ba
3L	15970448	3L_15970448_SNP [dm3] 3L_15977348_SNP [dm6]	A	G	3.656e^-4	1	SYNONYMOUS_CODING CG17029 DOWNSTREAM CG17026 INTRON brm
3R	20640996	3R_20640996_SNP [dm3] 3R_24815274_SNP [dm6]	G	T	3.660e^-4	1	DOWNSTREAM CG34150 INTRON CG5808	TF binding site mE1_TFBS_cad
2R	13783193	2R_13783193_SNP [dm3] 2R_17895688_SNP [dm6]	A	C	3.670e^-4	1	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	2916400	2R_2916400_DEL [dm3] 2R_7028895_DEL [dm6]	AC	A	3.675e^-4	1	UPSTREAM Tsp42Eg DOWNSTREAM Tsp42Ef INTERGENIC
3L	11712548	3L_11712548_DEL [dm3] 3L_11719448_DEL [dm6]	TGTTTAA	T	3.678e^-4	1	INTERGENIC
3L	11712557	3L_11712557_SNP [dm3] 3L_11719457_SNP [dm6]	T	A	3.678e^-4	1	INTERGENIC
3L	11712558	3L_11712558_DEL [dm3] 3L_11719458_DEL [dm6]	TCCGAATA	T	3.678e^-4	1	INTERGENIC
3L	11712568	3L_11712568_SNP [dm3] 3L_11719468_SNP [dm6]	A	G	3.678e^-4	1	INTERGENIC
2R	17658454	2R_17658454_SNP [dm3] 2R_21770949_SNP [dm6]	C	A	3.685e^-4	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17658475	2R_17658475_SNP [dm3] 2R_21770970_SNP [dm6]	T	A	3.685e^-4	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16665907	2R_16665907_SNP [dm3] 2R_20778402_SNP [dm6]	G	A	3.686e^-4	1	SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
2L	12946201	2L_12946201_SNP [dm3] 2L_12946201_SNP [dm6]	A	G	3.696e^-4	1	INTERGENIC
2R	13007971	2R_13007971_SNP [dm3] 2R_17120466_SNP [dm6]	T	C	3.702e^-4	1	UPSTREAM CR45272 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19779261	2R_19779261_SNP [dm3] 2R_23891738_SNP [dm6]	T	C	3.704e^-4	1	NON_SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
3L	10266910	3L_10266910_SNP [dm3] 3L_10273810_SNP [dm6]	C	T	3.710e^-4	1	SYNONYMOUS_CODING Or67d
3L	16272406	3L_16272406_SNP [dm3] 3L_16279306_SNP [dm6]	T	A	3.710e^-4	1	UPSTREAM CG13050 INTERGENIC
2L	14096264	2L_14096264_SNP [dm3] 2L_14096264_SNP [dm6]	C	A	3.723e^-4	1	INTERGENIC
3L	13772759	3L_13772759_DEL [dm3] 3L_13779659_DEL [dm6]	GC	G	3.725e^-4	1	INTRON bru-3
X	18815421	X_18815421_DEL [dm3] X_18921388_DEL [dm6]	GG	G	3.733e^-4	1	INTERGENIC
2L	3548300	2L_3548300_SNP [dm3] 2L_3548300_SNP [dm6]	C	A	3.749e^-4	1	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2702619	3L_2702619_SNP [dm3] 3L_2702619_SNP [dm6]	A	G	3.752e^-4	1	INTRON Fife
3L	16720869	3L_16720869_SNP [dm3] 3L_16727769_SNP [dm6]	G	A	3.754e^-4	1	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16720872	3L_16720872_SNP [dm3] 3L_16727772_SNP [dm6]	G	C	3.754e^-4	1	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16720881	3L_16720881_SNP [dm3] 3L_16727781_SNP [dm6]	G	A	3.754e^-4	1	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16720890	3L_16720890_SNP [dm3] 3L_16727790_SNP [dm6]	A	T	3.754e^-4	1	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16720909	3L_16720909_SNP [dm3] 3L_16727809_SNP [dm6]	A	G	3.754e^-4	1	NON_SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19629187	2R_19629187_SNP [dm3] 2R_23741664_SNP [dm6]	T	G	3.757e^-4	1	INTRON egl
3L	9723795	3L_9723795_SNP [dm3] 3L_9730695_SNP [dm6]	T	C	3.757e^-4	1	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	25827756	3R_25827756_SNP [dm3] 3R_30002034_SNP [dm6]	C	T	3.767e^-4	1	INTRON Tace	TF binding site mE1_TFBS_chinmo
X	19449583	X_19449583_SNP [dm3] X_19555550_SNP [dm6]	C	T	3.769e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5146812	3L_5146812_SNP [dm3] 3L_5153712_SNP [dm6]	C	T	3.773e^-4	1	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17856937	2R_17856937_SNP [dm3] 2R_21969432_SNP [dm6]	A	T	3.778e^-4	1	INTRON ppk9
2R	19785215	2R_19785215_SNP [dm3] 2R_23897692_SNP [dm6]	C	G	3.782e^-4	1	UPSTREAM Lpt DOWNSTREAM CG17658 INTRON CG5339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19785225	2R_19785225_SNP [dm3] 2R_23897702_SNP [dm6]	T	C	3.782e^-4	1	UPSTREAM Lpt DOWNSTREAM CG17658 INTRON CG5339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10390406	3L_10390406_SNP [dm3] 3L_10397306_SNP [dm6]	G	A	3.784e^-4	1	INTERGENIC
2L	3877690	2L_3877690_SNP [dm3] 2L_3877690_SNP [dm6]	A	G	3.786e^-4	1	INTRON capu
2L	6638039	2L_6638039_SNP [dm3] 2L_6638039_SNP [dm6]	A	G	3.787e^-4	1	NON_SYNONYMOUS_CODING CG31635
3R	15526700	3R_15526700_SNP [dm3] 3R_19700978_SNP [dm6]	C	A	3.800e^-4	1	INTERGENIC
3L	16277557	3L_16277557_SNP [dm3] 3L_16284457_SNP [dm6]	T	C	3.803e^-4	1	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
2L	9601977	2L_9601977_SNP [dm3] 2L_9601977_SNP [dm6]	T	A	3.806e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6707331	3L_6707331_SNP [dm3] 3L_6714231_SNP [dm6]	C	T	3.812e^-4	1	UTR_3_PRIME ple
X	7679148	X_7679148_SNP [dm3] X_7785115_SNP [dm6]	A	C	3.818e^-4	1	INTERGENIC
3L	13772209	3L_13772209_SNP [dm3] 3L_13779109_SNP [dm6]	G	A	3.821e^-4	1	INTRON bru-3
2L	2836509	2L_2836509_SNP [dm3] 2L_2836509_SNP [dm6]	A	C	3.823e^-4	1	INTRON CG3119
2R	10037989	2R_10037989_SNP [dm3] 2R_14150484_SNP [dm6]	A	T	3.825e^-4	1	INTRON Rcd1	TF binding site mE1_TFBS_HSA
2R	17658609	2R_17658609_SNP [dm3] 2R_21771104_SNP [dm6]	T	A	3.853e^-4	1	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17897689	X_17897689_DEL [dm3] X_18003656_DEL [dm6]	ACA	A	3.859e^-4	1	INTRON Sh
2R	18931448	2R_18931448_SNP [dm3] 2R_23043925_SNP [dm6]	T	C	3.880e^-4	1	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7773001	2L_7773001_SNP [dm3] 2L_7773001_SNP [dm6]	G	T	3.882e^-4	1	INTRON CG7191
X	10797966	X_10797966_INS [dm3] X_10903933_INS [dm6]	C	CATAC	3.894e^-4	1	INTERGENIC
3R	1766247	3R_1766247_SNP [dm3] 3R_5940525_SNP [dm6]	C	A	3.898e^-4	1	INTRON CG34113
2R	20073060	2R_20073060_SNP [dm3] 2R_24185537_SNP [dm6]	G	T	3.903e^-4	1	UTR_3_PRIME Nop60B UPSTREAM snoRNA:Me28S-G1083d & 2 others DOWNSTREAM snoRNA:Me28S-G1083a & 2 others INTRON Nop60B
X	4836700	X_4836700_SNP [dm3] X_4942667_SNP [dm6]	A	G	3.906e^-4	1	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
X	16938971	X_16938971_SNP [dm3] X_17044938_SNP [dm6]	G	A	3.920e^-4	1	INTRON CG45002
3R	10494256	3R_10494256_SNP [dm3] 3R_14668534_SNP [dm6]	T	C	3.922e^-4	1	NON_SYNONYMOUS_CODING Meltrin INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6200180	3R_6200180_SNP [dm3] 3R_10374458_SNP [dm6]	T	A	3.924e^-4	1	INTRON Rfx	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10238313	3L_10238313_SNP [dm3] 3L_10245213_SNP [dm6]	A	G	3.928e^-4	1	UPSTREAM Or67c INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17137852	2L_17137852_SNP [dm3] 2L_17137852_SNP [dm6]	A	T	3.933e^-4	1	INTRON beat-IIIa & 1 other
2L	6491527	2L_6491527_SNP [dm3] 2L_6491527_SNP [dm6]	G	A	3.935e^-4	1	UPSTREAM CG9548 INTRON CG31638	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20911271	3R_20911271_SNP [dm3] 3R_25085549_SNP [dm6]	T	G	3.940e^-4	1	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17967870	3R_17967870_SNP [dm3] 3R_22142148_SNP [dm6]	T	A	3.953e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3R	15077691	3R_15077691_INS [dm3] 3R_19251969_INS [dm6]	T	TTTAACT	3.956e^-4	1	INTERGENIC
2L	10791423	2L_10791423_SNP [dm3] 2L_10791423_SNP [dm6]	G	C	3.968e^-4	1	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
2L	5675566	2L_5675566_SNP [dm3] 2L_5675566_SNP [dm6]	G	C	3.978e^-4	1	INTERGENIC
2L	12173435	2L_12173435_SNP [dm3] 2L_12173435_SNP [dm6]	C	T	3.982e^-4	1	SYNONYMOUS_CODING crok UPSTREAM CG6583 DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
2R	16224694	2R_16224694_SNP [dm3] 2R_20337189_SNP [dm6]	A	C	3.984e^-4	1	INTERGENIC
X	7882019	X_7882019_SNP [dm3] X_7987986_SNP [dm6]	C	T	3.991e^-4	1	INTERGENIC
2R	19400572	2R_19400572_SNP [dm3] 2R_23513049_SNP [dm6]	A	T	3.993e^-4	1	UPSTREAM CG3906 INTERGENIC
3L	426284	3L_426284_SNP [dm3] 3L_426284_SNP [dm6]	T	C	4.007e^-4	1	INTERGENIC
3R	10561023	3R_10561023_SNP [dm3] 3R_14735301_SNP [dm6]	G	A	4.010e^-4	1	INTRON eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	625978	2L_625978_SNP [dm3] 2L_625978_SNP [dm6]	C	A	4.019e^-4	1	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
X	20217736	X_20217736_SNP [dm3] X_20346709_SNP [dm6]	A	G	4.024e^-4	1	INTERGENIC
2R	16664081	2R_16664081_SNP [dm3] 2R_20776576_SNP [dm6]	T	C	4.029e^-4	1	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
3L	6367938	3L_6367938_SNP [dm3] 3L_6374838_SNP [dm6]	T	C	4.042e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20358118	X_20358118_SNP [dm3] X_20487091_SNP [dm6]	C	T	4.042e^-4	1	SYNONYMOUS_CODING RhoGAP19D DOWNSTREAM CG15461
2R	9804544	2R_9804544_DEL [dm3] 2R_13917039_DEL [dm6]	ATATAAAA	A	4.052e^-4	1	INTRON shot
2R	17477711	2R_17477711_SNP [dm3] 2R_21590206_SNP [dm6]	T	G	4.065e^-4	1	UPSTREAM CG33225 INTERGENIC
3R	14186719	3R_14186719_SNP [dm3] 3R_18360997_SNP [dm6]	T	G	4.068e^-4	1	UPSTREAM CG15803 & 1 other EXON CR45634	TF binding site mE1_TFBS_chinmo
3R	17945440	3R_17945440_SNP [dm3] 3R_22119718_SNP [dm6]	A	G	4.092e^-4	1	UPSTREAM CG42390 & 1 other INTERGENIC
2L	9066898	2L_9066898_SNP [dm3] 2L_9066898_SNP [dm6]	T	G	4.094e^-4	1	INTRON CG31708
3L	17106343	3L_17106343_SNP [dm3] 3L_17113243_SNP [dm6]	G	A	4.096e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_cad
2L	5992411	2L_5992411_SNP [dm3] 2L_5992411_SNP [dm6]	A	T	4.103e^-4	1	INTRON lid	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9399254	X_9399254_SNP [dm3] X_9505221_SNP [dm6]	C	T	4.106e^-4	1	INTRON CG32700
2L	17492204	2L_17492204_SNP [dm3] 2L_17492204_SNP [dm6]	T	A	4.107e^-4	1	UTR_5_PRIME qua INTRON qua
2L	4060220	2L_4060220_DEL [dm3] 2L_4060220_DEL [dm6]	CAATGCGCAATGTGATATTC...	C	4.112e^-4	1	INTRON ed
3L	16814426	3L_16814426_DEL [dm3] 3L_16821326_DEL [dm6]	AAACACACA	A	4.113e^-4	1	INTRON CG13024
X	15883453	X_15883453_SNP [dm3] X_15989420_SNP [dm6]	G	C	4.123e^-4	1	START_GAINED eIF5 UTR_5_PRIME eIF5 INTRON eIF5
X	17897208	X_17897208_SNP [dm3] X_18003175_SNP [dm6]	A	G	4.123e^-4	1	INTRON Sh
X	4479399	X_4479399_SNP [dm3] X_4585366_SNP [dm6]	C	T	4.125e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	16680846	2R_16680846_SNP [dm3] 2R_20793341_SNP [dm6]	A	G	4.137e^-4	1	SYNONYMOUS_CODING CG15225
2R	17659393	2R_17659393_SNP [dm3] 2R_21771888_SNP [dm6]	A	G	4.143e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17897215	X_17897215_SNP [dm3] X_18003182_SNP [dm6]	C	T	4.149e^-4	1	INTRON Sh
2R	17476886	2R_17476886_SNP [dm3] 2R_21589381_SNP [dm6]	G	T	4.151e^-4	1	UPSTREAM CG33225 INTERGENIC
2R	10585829	2R_10585829_SNP [dm3] 2R_14698324_SNP [dm6]	T	C	4.151e^-4	1	INTRON mspo
2R	16663762	2R_16663762_SNP [dm3] 2R_20776257_SNP [dm6]	T	A	4.168e^-4	1	NON_SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
2L	17137849	2L_17137849_SNP [dm3] 2L_17137849_SNP [dm6]	A	T	4.174e^-4	1	INTRON beat-IIIa & 1 other
2L	10873234	2L_10873234_SNP [dm3] 2L_10873234_SNP [dm6]	A	G	4.179e^-4	1	DOWNSTREAM CR45454 INTERGENIC
3L	6685431	3L_6685431_SNP [dm3] 3L_6692331_SNP [dm6]	G	A	4.179e^-4	1	INTRON SP1173
3L	6685613	3L_6685613_SNP [dm3] 3L_6692513_SNP [dm6]	T	C	4.179e^-4	1	UTR_5_PRIME SP1173
3L	16235251	3L_16235251_SNP [dm3] 3L_16242151_SNP [dm6]	C	T	4.189e^-4	1	INTERGENIC
3R	6122963	3R_6122963_SNP [dm3] 3R_10297241_SNP [dm6]	G	T	4.205e^-4	1	INTRON CG43143
2R	16664195	2R_16664195_SNP [dm3] 2R_20776690_SNP [dm6]	C	A	4.213e^-4	1	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
3L	4057775	3L_4057775_SNP [dm3] 3L_4057775_SNP [dm6]	G	C	4.215e^-4	1	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10799035	3L_10799035_SNP [dm3] 3L_10805935_SNP [dm6]	C	T	4.219e^-4	1	UPSTREAM CR44347 INTERGENIC
2L	13330209	2L_13330209_SNP [dm3] 2L_13330209_SNP [dm6]	A	C	4.220e^-4	1	INTRON CG43778
2R	14971742	2R_14971742_SNP [dm3] 2R_19084237_SNP [dm6]	G	T	4.252e^-4	1	INTRON 5-HT1A
2L	13330143	2L_13330143_INS [dm3] 2L_13330143_INS [dm6]	A	ATTTTGCATTTTT...	4.253e^-4	1	INTRON CG43778
X	17174558	X_17174558_SNP [dm3] X_17280525_SNP [dm6]	A	C	4.255e^-4	1	UTR_3_PRIME f DOWNSTREAM CG8664
2L	92172	2L_92172_SNP [dm3] 2L_92172_SNP [dm6]	T	C	4.256e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	79460	2L_79460_SNP [dm3] 2L_79460_SNP [dm6]	C	G	4.258e^-4	1	INTERGENIC
2L	16010306	2L_16010306_SNP [dm3] 2L_16010306_SNP [dm6]	C	A	4.272e^-4	1	INTRON beat-Ic
3L	17988083	3L_17988083_SNP [dm3] 3L_17994983_SNP [dm6]	T	A	4.273e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8279431	X_8279431_SNP [dm3] X_8385398_SNP [dm6]	A	T	4.281e^-4	1	UPSTREAM CG1387 INTERGENIC
2R	10108839	2R_10108839_INS [dm3] 2R_14221334_INS [dm6]	G	GAGAT	4.285e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16273044	3L_16273044_SNP [dm3] 3L_16279944_SNP [dm6]	T	C	4.293e^-4	1	UPSTREAM CG13050 & 1 other INTERGENIC
3L	5853360	3L_5853360_SNP [dm3] 3L_5860260_SNP [dm6]	G	A	4.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	17968142	3R_17968142_SNP [dm3] 3R_22142420_SNP [dm6]	C	A	4.294e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10521166	3R_10521166_SNP [dm3] 3R_14695444_SNP [dm6]	A	G	4.295e^-4	1	INTRON Meltrin	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13421728	2R_13421728_INS [dm3] 2R_17534223_INS [dm6]	G	GG	4.301e^-4	1	INTRON Patronin	TF binding site BDTNP1_TFBS_dl
3L	23221816	3L_23221816_SNP [dm3] 3L_23228716_SNP [dm6]	G	T	4.307e^-4	1	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9724871	3L_9724871_SNP [dm3] 3L_9731771_SNP [dm6]	G	A	4.349e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13330141	2L_13330141_INS [dm3] 2L_13330141_INS [dm6]	C	CTTTT	4.349e^-4	1	INTRON CG43778
3L	3858737	3L_3858737_SNP [dm3] 3L_3858737_SNP [dm6]	G	A	4.363e^-4	1	INTRON Awh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2898133	2R_2898133_SNP [dm3] 2R_7010628_SNP [dm6]	T	A	4.366e^-4	1	INTRON Tsp42Ed	TF binding site mE1_TFBS_sens
3R	12967289	3R_12967289_SNP [dm3] 3R_17141567_SNP [dm6]	G	A	4.388e^-4	1	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14679677	3L_14679677_SNP [dm3] 3L_14686577_SNP [dm6]	C	G	4.432e^-4	1	DOWNSTREAM CG5048 INTRON ome
3R	16909523	3R_16909523_SNP [dm3] 3R_21083801_SNP [dm6]	G	A	4.434e^-4	1	UTR_3_PRIME RhoGAP93B
3L	19444885	3L_19444885_SNP [dm3] 3L_19451785_SNP [dm6]	G	A	4.439e^-4	1	INTERGENIC
3R	15528901	3R_15528901_SNP [dm3] 3R_19703179_SNP [dm6]	G	A	4.442e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17896959	X_17896959_SNP [dm3] X_18002926_SNP [dm6]	A	G	4.445e^-4	1	INTRON Sh
X	17897716	X_17897716_SNP [dm3] X_18003683_SNP [dm6]	C	T	4.445e^-4	1	INTRON Sh
X	17898158	X_17898158_SNP [dm3] X_18004125_SNP [dm6]	G	A	4.445e^-4	1	INTRON Sh
X	17898163	X_17898163_SNP [dm3] X_18004130_SNP [dm6]	G	A	4.445e^-4	1	INTRON Sh
3R	11116745	3R_11116745_SNP [dm3] 3R_15291023_SNP [dm6]	A	T	4.454e^-4	1	UTR_5_PRIME Tm1 UPSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10238283	3L_10238283_SNP [dm3] 3L_10245183_SNP [dm6]	C	T	4.457e^-4	1	UPSTREAM Or67c INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	313888	X_313888_SNP [dm3] X_419855_SNP [dm6]	G	T	4.473e^-4	1	INTRON CG32816	TF binding site mE1_TFBS_HSA
3R	14236273	3R_14236273_SNP [dm3] 3R_18410551_SNP [dm6]	G	A	4.475e^-4	1	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16265564	3L_16265564_SNP [dm3] 3L_16272464_SNP [dm6]	C	T	4.492e^-4	1	UPSTREAM CG13066 DOWNSTREAM CG13067 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20264656	3R_20264656_INS [dm3] 3R_24438934_INS [dm6]	G	GAAAGAGTGGGTG...	4.497e^-4	1	UPSTREAM CR43455 INTRON nAChRalpha1
3L	15616075	3L_15616075_SNP [dm3] 3L_15622975_SNP [dm6]	C	T	4.529e^-4	1	SYNONYMOUS_CODING CG7372 INTRON comm3
2R	19899758	2R_19899758_SNP [dm3] 2R_24012235_SNP [dm6]	A	G	4.552e^-4	1	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15528841	3R_15528841_SNP [dm3] 3R_19703119_SNP [dm6]	C	T	4.568e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23271190	3L_23271190_SNP [dm3] 3L_23278090_SNP [dm6]	T	G	4.571e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10108845	2R_10108845_INS [dm3] 2R_14221340_INS [dm6]	G	GAGTA	4.593e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14062795	3L_14062795_SNP [dm3] 3L_14069695_SNP [dm6]	A	G	4.594e^-4	1	INTRON CG32138
2L	3092634	2L_3092634_SNP [dm3] 2L_3092634_SNP [dm6]	G	T	4.605e^-4	1	INTRON toc
3L	11310813	3L_11310813_SNP [dm3] 3L_11317713_SNP [dm6]	G	A	4.614e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6492109	2L_6492109_SNP [dm3] 2L_6492109_SNP [dm6]	A	C	4.616e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17137838	2L_17137838_SNP [dm3] 2L_17137838_SNP [dm6]	T	C	4.616e^-4	1	INTRON beat-IIIa & 1 other
X	17895311	X_17895311_INS [dm3] X_18001278_INS [dm6]	G	GTATAT	4.623e^-4	1	INTRON Sh
3L	19502760	3L_19502760_SNP [dm3] 3L_19509660_SNP [dm6]	C	T	4.635e^-4	1	INTERGENIC
3L	13602918	3L_13602918_SNP [dm3] 3L_13609818_SNP [dm6]	A	T	4.657e^-4	1	INTRON bru-3
2R	6870197	2R_6870197_INS [dm3] 2R_10982692_INS [dm6]	G	GA	4.662e^-4	1	UTR_3_PRIME luna DOWNSTREAM luna
3L	2186133	3L_2186133_SNP [dm3] 3L_2186133_SNP [dm6]	T	C	4.665e^-4	1	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
X	20356479	X_20356479_SNP [dm3] X_20485452_SNP [dm6]	C	T	4.670e^-4	1	UPSTREAM CG15461 INTRON RhoGAP19D
X	20356481	X_20356481_SNP [dm3] X_20485454_SNP [dm6]	A	T	4.670e^-4	1	UPSTREAM CG15461 INTRON RhoGAP19D
X	20356581	X_20356581_SNP [dm3] X_20485554_SNP [dm6]	G	A	4.670e^-4	1	UPSTREAM CG15461 INTRON RhoGAP19D
X	20357363	X_20357363_SNP [dm3] X_20486336_SNP [dm6]	C	A	4.670e^-4	1	INTRON RhoGAP19D & 1 other
X	20357653	X_20357653_SNP [dm3] X_20486626_SNP [dm6]	G	A	4.670e^-4	1	DOWNSTREAM CG15461 INTRON RhoGAP19D
X	20358554	X_20358554_SNP [dm3] X_20487527_SNP [dm6]	T	A	4.670e^-4	1	SPLICE_SITE_REGION RhoGAP19D DOWNSTREAM CG15461 INTRON RhoGAP19D
X	17897040	X_17897040_SNP [dm3] X_18003007_SNP [dm6]	T	A	4.670e^-4	1	INTRON Sh
2L	11199892	2L_11199892_SNP [dm3] 2L_11199892_SNP [dm6]	T	A	4.675e^-4	1	INTRON Ca-beta
X	10438171	X_10438171_SNP [dm3] X_10544138_SNP [dm6]	G	A	4.675e^-4	1	INTRON spri
3R	19583416	3R_19583416_SNP [dm3] 3R_23757694_SNP [dm6]	C	A	4.685e^-4	1	UTR_5_PRIME Hrd3 UPSTREAM Plip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	10886741	3L_10886741_SNP [dm3] 3L_10893641_SNP [dm6]	A	T	4.685e^-4	1	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
2R	6950996	2R_6950996_SNP [dm3] 2R_11063491_SNP [dm6]	A	T	4.689e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6736946	2L_6736946_SNP [dm3] 2L_6736946_SNP [dm6]	T	C	4.690e^-4	1	NON_SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	26071226	3R_26071226_DEL [dm3] 3R_30245504_DEL [dm6]	AA	A	4.692e^-4	1	INTRON CG9733
3L	5465687	3L_5465687_SNP [dm3] 3L_5472587_SNP [dm6]	C	G	4.694e^-4	1	INTERGENIC
3R	25912984	3R_25912984_SNP [dm3] 3R_30087262_SNP [dm6]	T	C	4.702e^-4	1	INTRON sima
2R	10589092	2R_10589092_SNP [dm3] 2R_14701587_SNP [dm6]	G	A	4.705e^-4	1	INTRON mspo
3L	20151120	3L_20151120_DEL [dm3] 3L_20158020_DEL [dm6]	AATCTAAAATCAAGATTTTA...	A	4.716e^-4	1	INTRON CG42674
3R	13219936	3R_13219936_SNP [dm3] 3R_17394214_SNP [dm6]	C	G	4.721e^-4	1	NON_SYNONYMOUS_CODING CREG DOWNSTREAM Sur-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13219986	3R_13219986_SNP [dm3] 3R_17394264_SNP [dm6]	A	T	4.721e^-4	1	SPLICE_SITE_REGION CREG UTR_5_PRIME CREG DOWNSTREAM Sur-8 INTRON CREG	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17895177	X_17895177_SNP [dm3] X_18001144_SNP [dm6]	T	A	4.727e^-4	1	INTRON Sh
3R	26062496	3R_26062496_INS [dm3] 3R_30236774_INS [dm6]	A	ATCAT	4.734e^-4	1	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5027935	X_5027935_SNP [dm3] X_5133902_SNP [dm6]	G	A	4.745e^-4	1	DOWNSTREAM Rpn13R INTRON rg & 1 other
3R	15421909	3R_15421909_SNP [dm3] 3R_19596187_SNP [dm6]	C	T	4.747e^-4	1	UTR_3_PRIME Dys DOWNSTREAM Dys
2R	10694895	2R_10694895_SNP [dm3] 2R_14807390_SNP [dm6]	A	T	4.748e^-4	1	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
3L	12877290	3L_12877290_SNP [dm3] 3L_12884190_SNP [dm6]	A	T	4.749e^-4	1	UPSTREAM CG14120 INTERGENIC
3R	15512579	3R_15512579_SNP [dm3] 3R_19686857_SNP [dm6]	C	T	4.750e^-4	1	UPSTREAM Naam INTRON Naam
2L	16244585	2L_16244585_SNP [dm3] 2L_16244585_SNP [dm6]	A	T	4.758e^-4	1	NON_SYNONYMOUS_CODING CG42818
2L	14954631	2L_14954631_SNP [dm3] 2L_14954631_SNP [dm6]	G	C	4.761e^-4	1	INTRON CG42313
2R	14396573	2R_14396573_SNP [dm3] 2R_18509068_SNP [dm6]	C	T	4.764e^-4	1	INTERGENIC
3L	7475777	3L_7475777_SNP [dm3] 3L_7482677_SNP [dm6]	A	G	4.766e^-4	1	INTERGENIC
2L	3929041	2L_3929041_SNP [dm3] 2L_3929041_SNP [dm6]	G	A	4.769e^-4	1	INTRON fred
3L	5781169	3L_5781169_SNP [dm3] 3L_5788069_SNP [dm6]	C	T	4.804e^-4	1	INTERGENIC
2L	13330164	2L_13330164_SNP [dm3] 2L_13330164_SNP [dm6]	T	A	4.806e^-4	1	INTRON CG43778
2L	13330165	2L_13330165_SNP [dm3] 2L_13330165_SNP [dm6]	G	T	4.806e^-4	1	INTRON CG43778
3L	13260421	3L_13260421_SNP [dm3] 3L_13267321_SNP [dm6]	G	A	4.841e^-4	1	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10522412	3R_10522412_SNP [dm3] 3R_14696690_SNP [dm6]	G	T	4.851e^-4	1	UTR_5_PRIME Meltrin DOWNSTREAM kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19355501	2R_19355501_SNP [dm3] 2R_23467978_SNP [dm6]	T	C	4.872e^-4	1	INTRON CG43795
2L	2463769	2L_2463769_DEL [dm3] 2L_2463769_DEL [dm6]	TCTCAT	T	4.875e^-4	1	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10886661	3L_10886661_SNP [dm3] 3L_10893561_SNP [dm6]	A	C	4.878e^-4	1	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
3L	10886662	3L_10886662_SNP [dm3] 3L_10893562_SNP [dm6]	T	A	4.878e^-4	1	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
2L	19263738	2L_19263738_SNP [dm3] 2L_19263738_SNP [dm6]	T	C	4.878e^-4	1	DOWNSTREAM CR44191 INTERGENIC
2L	12145677	2L_12145677_SNP [dm3] 2L_12145677_SNP [dm6]	G	T	4.888e^-4	1	INTRON CG31760
2R	17476839	2R_17476839_SNP [dm3] 2R_21589334_SNP [dm6]	G	A	4.923e^-4	1	UPSTREAM CG33225 INTERGENIC
3R	13081689	3R_13081689_SNP [dm3] 3R_17255967_SNP [dm6]	C	A	4.936e^-4	1	INTRON beat-IIb
2R	8912117	2R_8912117_SNP [dm3] 2R_13024612_SNP [dm6]	A	C	4.945e^-4	1	INTERGENIC
2L	16252272	2L_16252272_DEL [dm3] 2L_16252272_DEL [dm6]	GTCTCTGAAATAAGTTTCG...	G	4.960e^-4	1	UPSTREAM PRL-1 INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7072330	3R_7072330_SNP [dm3] 3R_11246608_SNP [dm6]	G	C	4.961e^-4	1	UTR_3_PRIME CG5214	TF binding site mE1_TFBS_cad
2R	6167880	2R_6167880_SNP [dm3] 2R_10280375_SNP [dm6]	C	T	4.970e^-4	1	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
3L	8384502	3L_8384502_DEL [dm3] 3L_8391402_DEL [dm6]	CGTCGATC	C	4.980e^-4	1	UPSTREAM Jon66Ci DOWNSTREAM ImpE1 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	13647696	3R_13647696_SNP [dm3] 3R_17821974_SNP [dm6]	A	G	4.989e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	17174280	X_17174280_SNP [dm3] X_17280247_SNP [dm6]	T	C	4.992e^-4	1	SYNONYMOUS_CODING f DOWNSTREAM CG8664
2L	15102406	2L_15102406_SNP [dm3] 2L_15102406_SNP [dm6]	A	C	4.999e^-4	1	INTERGENIC
3L	9331826	3L_9331826_INS [dm3] 3L_9338726_INS [dm6]	A	ATACA	5.000e^-4	1	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
2R	8536313	2R_8536313_SNP [dm3] 2R_12648808_SNP [dm6]	G	A	5.002e^-4	1	UPSTREAM CG8785 INTERGENIC
2R	15397728	2R_15397728_SNP [dm3] 2R_19510223_SNP [dm6]	C	T	5.011e^-4	1	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
X	17897540	X_17897540_DEL [dm3] X_18003507_DEL [dm6]	CTTTGCAATCGCCAGTGGGA...	C	5.027e^-4	1	INTRON Sh
3R	16337476	3R_16337476_SNP [dm3] 3R_20511754_SNP [dm6]	G	A	5.032e^-4	1	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1141603	3L_1141603_SNP [dm3] 3L_1141603_SNP [dm6]	T	A	5.034e^-4	1	UTR_3_PRIME bab2
3L	1141672	3L_1141672_DEL [dm3] 3L_1141672_DEL [dm6]	GTGTGTTTTACG...	G	5.034e^-4	1	UTR_3_PRIME bab2
3L	1141712	3L_1141712_SNP [dm3] 3L_1141712_SNP [dm6]	C	G	5.034e^-4	1	UTR_3_PRIME bab2
2R	14156201	2R_14156201_SNP [dm3] 2R_18268696_SNP [dm6]	C	T	5.036e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20356748	X_20356748_SNP [dm3] X_20485721_SNP [dm6]	C	T	5.067e^-4	1	UPSTREAM CG15461 INTRON RhoGAP19D
3R	6371313	3R_6371313_SNP [dm3] 3R_10545591_SNP [dm6]	T	A	5.071e^-4	1	INTRON hth
X	12328655	X_12328655_SNP [dm3] X_12434622_SNP [dm6]	A	T	5.077e^-4	1	INTRON Pkcdelta
3L	8278494	3L_8278494_SNP [dm3] 3L_8285394_SNP [dm6]	G	T	5.080e^-4	1	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15175493	3R_15175493_SNP [dm3] 3R_19349771_SNP [dm6]	A	T	5.080e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11645865	2L_11645865_SNP [dm3] 2L_11645865_SNP [dm6]	G	T	5.083e^-4	1	SPLICE_SITE_REGION CG6614 INTRON CG6614
X	16148818	X_16148818_SNP [dm3] X_16254785_SNP [dm6]	A	G	5.091e^-4	1	UPSTREAM snRNA:U5:14B EXON snRNA:U2:14B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6681557	3L_6681557_SNP [dm3] 3L_6688457_SNP [dm6]	C	G	5.101e^-4	1	DOWNSTREAM SP1173 INTERGENIC
2R	12530827	2R_12530827_DEL [dm3] 2R_16643322_DEL [dm6]	TATGTTTT	T	5.109e^-4	1	INTRON gprs	TF binding site BDTNP1_TFBS_da
3L	23222045	3L_23222045_SNP [dm3] 3L_23228945_SNP [dm6]	T	C	5.111e^-4	1	INTRON nAChRalpha4
X	10375998	X_10375998_SNP [dm3] X_10481965_SNP [dm6]	C	T	5.128e^-4	1	DOWNSTREAM CG32687 & 1 other INTERGENIC
X	10376049	X_10376049_SNP [dm3] X_10482016_SNP [dm6]	C	T	5.128e^-4	1	DOWNSTREAM CG32687 & 1 other INTERGENIC
2L	5483035	2L_5483035_SNP [dm3] 2L_5483035_SNP [dm6]	A	G	5.135e^-4	1	INTERGENIC
2R	19852136	2R_19852136_SNP [dm3] 2R_23964613_SNP [dm6]	A	C	5.153e^-4	1	UTR_3_PRIME Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15632614	3R_15632614_SNP [dm3] 3R_19806892_SNP [dm6]	C	T	5.156e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15161695	2R_15161695_INS [dm3] 2R_19274190_INS [dm6]	T	TTT	5.160e^-4	1	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	18728608	X_18728608_SNP [dm3] X_18834575_SNP [dm6]	T	A	5.173e^-4	1	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
3L	12995230	3L_12995230_SNP [dm3] 3L_13002130_SNP [dm6]	A	G	5.177e^-4	1	INTERGENIC
X	6962395	X_6962395_SNP [dm3] X_7068362_SNP [dm6]	T	G	5.180e^-4	1	INTERGENIC
X	756413	X_756413_SNP [dm3] X_862380_SNP [dm6]	G	A	5.184e^-4	1	UPSTREAM CG14634 INTRON CG43867
3R	19578963	3R_19578963_SNP [dm3] 3R_23753241_SNP [dm6]	A	G	5.212e^-4	1	UPSTREAM RanBP3 INTRON Rpt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	1019553	2L_1019553_SNP [dm3] 2L_1019553_SNP [dm6]	C	T	5.223e^-4	1	INTRON IA-2
2R	10108816	2R_10108816_SNP [dm3] 2R_14221311_SNP [dm6]	A	C	5.234e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10108882	2R_10108882_DEL [dm3] 2R_14221377_DEL [dm6]	TGCATT	T	5.234e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	19400569	2R_19400569_SNP [dm3] 2R_23513046_SNP [dm6]	T	A	5.246e^-4	1	UPSTREAM CG3906 INTERGENIC
3L	2702756	3L_2702756_SNP [dm3] 3L_2702756_SNP [dm6]	G	A	5.251e^-4	1	INTRON Fife
X	5030334	X_5030334_SNP [dm3] X_5136301_SNP [dm6]	C	G	5.253e^-4	1	INTRON rg & 1 other
2L	6736971	2L_6736971_SNP [dm3] 2L_6736971_SNP [dm6]	T	C	5.278e^-4	1	SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	9685865	2L_9685865_SNP [dm3] 2L_9685865_SNP [dm6]	A	G	5.310e^-4	1	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2702473	3L_2702473_SNP [dm3] 3L_2702473_SNP [dm6]	G	C	5.311e^-4	1	INTRON Fife
X	16598001	X_16598001_SNP [dm3] X_16703968_SNP [dm6]	G	C	5.315e^-4	1	UPSTREAM CG4653 & 1 other INTRON CG4678	TF binding site mE1_TFBS_chinmo
X	17891732	X_17891732_SNP [dm3] X_17997699_SNP [dm6]	C	T	5.319e^-4	1	INTRON Sh
2L	9630036	2L_9630036_SNP [dm3] 2L_9630036_SNP [dm6]	A	C	5.319e^-4	1	INTERGENIC
2L	839972	2L_839972_SNP [dm3] 2L_839972_SNP [dm6]	C	T	5.328e^-4	1	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19357316	2R_19357316_SNP [dm3] 2R_23469793_SNP [dm6]	A	T	5.332e^-4	1	DOWNSTREAM Or59b INTRON CG43795
3L	15475698	3L_15475698_SNP [dm3] 3L_15482598_SNP [dm6]	A	G	5.347e^-4	1	INTERGENIC
3L	2340206	3L_2340206_SNP [dm3] 3L_2340206_SNP [dm6]	C	T	5.386e^-4	1	INTRON MsR1
2R	17780818	2R_17780818_SNP [dm3] 2R_21893313_SNP [dm6]	C	A	5.390e^-4	1	INTRON Fili
3L	10292136	3L_10292136_SNP [dm3] 3L_10299036_SNP [dm6]	A	G	5.412e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17967884	3R_17967884_SNP [dm3] 3R_22142162_SNP [dm6]	T	C	5.425e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3L	5348670	3L_5348670_SNP [dm3] 3L_5355570_SNP [dm6]	T	A	5.426e^-4	1	UPSTREAM tRNA:CR32420 & 1 other INTRON lama	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1257089	3L_1257089_SNP [dm3] 3L_1257089_SNP [dm6]	G	C	5.428e^-4	1	UTR_5_PRIME CG9134
X	9470716	X_9470716_SNP [dm3] X_9576683_SNP [dm6]	T	C	5.429e^-4	1	UPSTREAM CG42395 INTRON CG32699
2L	12110447	2L_12110447_SNP [dm3] 2L_12110447_SNP [dm6]	G	C	5.431e^-4	1	NON_SYNONYMOUS_CODING Phae1 UPSTREAM Phae2	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	25005636	3R_25005636_SNP [dm3] 3R_29179914_SNP [dm6]	C	T	5.449e^-4	1	INTRON CG14509
2R	17083552	2R_17083552_DEL [dm3] 2R_21196047_DEL [dm6]	AA	A	5.455e^-4	1	INTRON Lapsyn
3R	17945398	3R_17945398_SNP [dm3] 3R_22119676_SNP [dm6]	G	T	5.457e^-4	1	UPSTREAM CG42390 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	19503102	3L_19503102_SNP [dm3] 3L_19510002_SNP [dm6]	G	C	5.466e^-4	1	INTERGENIC
3R	12236657	3R_12236657_SNP [dm3] 3R_16410935_SNP [dm6]	A	C	5.473e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15091275	3R_15091275_SNP [dm3] 3R_19265553_SNP [dm6]	T	C	5.478e^-4	1	INTERGENIC
X	20127522	X_20127522_SNP [dm3] X_20256496_SNP [dm6]	A	C	5.482e^-4	1	INTRON CG17065	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_cad
2R	15513394	2R_15513394_SNP [dm3] 2R_19625889_SNP [dm6]	A	C	5.486e^-4	1	INTRON sm
2R	14156185	2R_14156185_SNP [dm3] 2R_18268680_SNP [dm6]	A	G	5.488e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16082737	X_16082737_SNP [dm3] X_16188704_SNP [dm6]	G	A	5.488e^-4	1	INTERGENIC
3R	10244103	3R_10244103_SNP [dm3] 3R_14418381_SNP [dm6]	T	C	5.523e^-4	1	UPSTREAM natalisin INTRON cv-c
3R	10244117	3R_10244117_SNP [dm3] 3R_14418395_SNP [dm6]	G	A	5.523e^-4	1	UPSTREAM natalisin INTRON cv-c
2R	17978686	2R_17978686_SNP [dm3] 2R_22091181_SNP [dm6]	A	G	5.532e^-4	1	NON_SYNONYMOUS_CODING CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073
2R	6726054	2R_6726054_SNP [dm3] 2R_10838549_SNP [dm6]	C	T	5.534e^-4	1	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11794447	X_11794447_SNP [dm3] X_11900414_SNP [dm6]	A	G	5.545e^-4	1	UTR_3_PRIME Upf1 DOWNSTREAM Upf1 & 1 other
2L	10862650	2L_10862650_SNP [dm3] 2L_10862650_SNP [dm6]	C	T	5.551e^-4	1	DOWNSTREAM Stam EXON CR43807
2L	17204246	2L_17204246_SNP [dm3] 2L_17204246_SNP [dm6]	T	C	5.552e^-4	1	INTRON beat-IIIc
2R	14699217	2R_14699217_SNP [dm3] 2R_18811712_SNP [dm6]	A	G	5.552e^-4	1	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17176266	2R_17176266_SNP [dm3] 2R_21288761_SNP [dm6]	A	G	5.563e^-4	1	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	14156202	2R_14156202_SNP [dm3] 2R_18268697_SNP [dm6]	A	T	5.567e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156204	2R_14156204_SNP [dm3] 2R_18268699_SNP [dm6]	A	T	5.567e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156207	2R_14156207_INS [dm3] 2R_18268702_INS [dm6]	T	GTTCA	5.567e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156245	2R_14156245_SNP [dm3] 2R_18268740_SNP [dm6]	T	A	5.567e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3228971	X_3228971_SNP [dm3] X_3334938_SNP [dm6]	G	A	5.580e^-4	1	INTRON CR44886 & 1 other
3L	19214534	3L_19214534_SNP [dm3] 3L_19221434_SNP [dm6]	C	T	5.599e^-4	1	INTRON fz2
X	15171002	X_15171002_SNP [dm3] X_15276969_SNP [dm6]	T	A	5.600e^-4	1	INTERGENIC
X	11274726	X_11274726_SNP [dm3] X_11380693_SNP [dm6]	T	G	5.601e^-4	1	INTRON dlg1
X	9474024	X_9474024_SNP [dm3] X_9579991_SNP [dm6]	C	A	5.610e^-4	1	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6720568	2R_6720568_DEL [dm3] 2R_10833063_DEL [dm6]	CA	C	5.621e^-4	1	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13330127	2L_13330127_SNP [dm3] 2L_13330127_SNP [dm6]	T	G	5.630e^-4	1	INTRON CG43778
2L	3924815	2L_3924815_SNP [dm3] 2L_3924815_SNP [dm6]	G	A	5.632e^-4	1	INTRON fred
2R	17439290	2R_17439290_SNP [dm3] 2R_21551785_SNP [dm6]	T	C	5.637e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13330177	2L_13330177_INS [dm3] 2L_13330177_INS [dm6]	G	GTAAAAG	5.651e^-4	1	INTRON CG43778
X	10880760	X_10880760_SNP [dm3] X_10986727_SNP [dm6]	A	G	5.662e^-4	1	INTRON CG42339
3L	7194236	3L_7194236_SNP [dm3] 3L_7201136_SNP [dm6]	G	T	5.670e^-4	1	INTERGENIC
3L	7194278	3L_7194278_SNP [dm3] 3L_7201178_SNP [dm6]	T	C	5.670e^-4	1	INTERGENIC
3L	7194283	3L_7194283_SNP [dm3] 3L_7201183_SNP [dm6]	C	G	5.670e^-4	1	INTERGENIC
3L	7194317	3L_7194317_SNP [dm3] 3L_7201217_SNP [dm6]	T	C	5.670e^-4	1	INTERGENIC
X	2735888	X_2735888_SNP [dm3] X_2841855_SNP [dm6]	A	C	5.670e^-4	1	INTRON kirre
3R	14135150	3R_14135150_SNP [dm3] 3R_18309428_SNP [dm6]	C	T	5.679e^-4	1	UTR_5_PRIME PKD
3R	17967875	3R_17967875_SNP [dm3] 3R_22142153_SNP [dm6]	G	T	5.682e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3L	13839804	3L_13839804_DEL [dm3] 3L_13846704_DEL [dm6]	AAGT	CC	5.702e^-4	1	INTRON Hml
3L	3855333	3L_3855333_INS [dm3] 3L_3855333_INS [dm6]	A	AAGA	5.707e^-4	1	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3855335	3L_3855335_SNP [dm3] 3L_3855335_SNP [dm6]	C	A	5.707e^-4	1	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	827287	3L_827287_SNP [dm3] 3L_827287_SNP [dm6]	A	G	5.708e^-4	1	UPSTREAM snoRNA:Me28S-C788b DOWNSTREAM snoRNA:Me28S-C788a & 2 others INTRON CG13900 & 1 other
2R	10694897	2R_10694897_SNP [dm3] 2R_14807392_SNP [dm6]	G	A	5.716e^-4	1	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
3L	8795244	3L_8795244_SNP [dm3] 3L_8802144_SNP [dm6]	T	A	5.736e^-4	1	UTR_5_PRIME CG13311 UPSTREAM CG34426
3L	16279182	3L_16279182_SNP [dm3] 3L_16286082_SNP [dm6]	T	G	5.739e^-4	1	UPSTREAM CG13047 INTERGENIC
3L	5852475	3L_5852475_SNP [dm3] 3L_5859375_SNP [dm6]	C	T	5.746e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17897192	X_17897192_DEL [dm3] X_18003159_DEL [dm6]	AA	A	5.755e^-4	1	INTRON Sh
2L	3924617	2L_3924617_SNP [dm3] 2L_3924617_SNP [dm6]	C	G	5.760e^-4	1	INTRON fred
2L	9686594	2L_9686594_SNP [dm3] 2L_9686594_SNP [dm6]	T	C	5.765e^-4	1	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13125905	X_13125905_SNP [dm3] X_13231872_SNP [dm6]	T	C	5.766e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14212578	X_14212578_SNP [dm3] X_14318545_SNP [dm6]	T	C	5.767e^-4	1	INTERGENIC
3L	4407978	3L_4407978_SNP [dm3] 3L_4407978_SNP [dm6]	C	T	5.768e^-4	1	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1141699	3L_1141699_INS [dm3] 3L_1141699_INS [dm6]	T	TTTTTT	5.769e^-4	1	UTR_3_PRIME bab2
2L	11351199	2L_11351199_SNP [dm3] 2L_11351199_SNP [dm6]	T	G	5.779e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	10643740	3R_10643740_SNP [dm3] 3R_14818018_SNP [dm6]	A	G	5.782e^-4	1	SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14156218	2R_14156218_SNP [dm3] 2R_18268713_SNP [dm6]	A	T	5.787e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156223	2R_14156223_DEL [dm3] 2R_18268718_DEL [dm6]	AT	A	5.787e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8324145	2L_8324145_SNP [dm3] 2L_8324145_SNP [dm6]	T	G	5.792e^-4	1	INTRON CG7781
3R	26635077	3R_26635077_SNP [dm3] 3R_30809355_SNP [dm6]	C	T	5.794e^-4	1	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18469948	3L_18469948_SNP [dm3] 3L_18476848_SNP [dm6]	G	A	5.802e^-4	1	INTERGENIC
2L	17201746	2L_17201746_SNP [dm3] 2L_17201746_SNP [dm6]	G	A	5.803e^-4	1	INTRON beat-IIIc
2L	17201771	2L_17201771_DEL [dm3] 2L_17201771_DEL [dm6]	GATATTAACG	G	5.803e^-4	1	INTRON beat-IIIc
3L	1674059	3L_1674059_SNP [dm3] 3L_1674059_SNP [dm6]	C	T	5.805e^-4	1	UPSTREAM CG7991 INTERGENIC
3L	15709277	3L_15709277_SNP [dm3] 3L_15716177_SNP [dm6]	G	T	5.811e^-4	1	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	27335732	3R_27335732_DEL [dm3] 3R_31510010_DEL [dm6]	AGTCCCCAGATGGAA...	A	5.835e^-4	1	INTERGENIC
2L	9601726	2L_9601726_SNP [dm3] 2L_9601726_SNP [dm6]	A	T	5.836e^-4	1	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14882124	3L_14882124_SNP [dm3] 3L_14889024_SNP [dm6]	T	C	5.842e^-4	1	INTERGENIC
3R	26635042	3R_26635042_SNP [dm3] 3R_30809320_SNP [dm6]	G	T	5.843e^-4	1	START_GAINED cindr UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3809413	X_3809413_SNP [dm3] X_3915380_SNP [dm6]	C	A	5.844e^-4	1	INTRON CG42541
3L	23208158	3L_23208158_SNP [dm3] 3L_23215058_SNP [dm6]	C	T	5.847e^-4	1	INTRON nAChRalpha4
3R	6319929	3R_6319929_INS [dm3] 3R_10494207_INS [dm6]	T	TA	5.848e^-4	1	INTERGENIC
2R	11831060	2R_11831060_SNP [dm3] 2R_15943555_SNP [dm6]	T	C	5.853e^-4	1	UPSTREAM CG30093 INTRON Cyp4aa1
2L	11926143	2L_11926143_SNP [dm3] 2L_11926143_SNP [dm6]	G	T	5.861e^-4	1	INTRON Pde1c
2L	615181	2L_615181_SNP [dm3] 2L_615181_SNP [dm6]	T	A	5.866e^-4	1	INTERGENIC
3L	19401555	3L_19401555_SNP [dm3] 3L_19408455_SNP [dm6]	T	A	5.870e^-4	1	INTRON CG32206
X	5816587	X_5816587_SNP [dm3] X_5922554_SNP [dm6]	G	A	5.870e^-4	1	INTRON CG3726
X	16404929	X_16404929_SNP [dm3] X_16510896_SNP [dm6]	T	C	5.872e^-4	1	INTRON para
2R	8863045	2R_8863045_SNP [dm3] 2R_12975540_SNP [dm6]	T	C	5.872e^-4	1	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8908576	2R_8908576_SNP [dm3] 2R_13021071_SNP [dm6]	T	G	5.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8908577	2R_8908577_SNP [dm3] 2R_13021072_SNP [dm6]	C	A	5.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	830028	2L_830028_SNP [dm3] 2L_830028_SNP [dm6]	G	A	5.875e^-4	1	INTRON dock	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16267646	3L_16267646_SNP [dm3] 3L_16274546_SNP [dm6]	T	C	5.902e^-4	1	DOWNSTREAM CG13066 INTERGENIC
3L	16268569	3L_16268569_SNP [dm3] 3L_16275469_SNP [dm6]	C	A	5.902e^-4	1	INTERGENIC
3L	16268788	3L_16268788_SNP [dm3] 3L_16275688_SNP [dm6]	G	A	5.902e^-4	1	INTERGENIC
2R	17825586	2R_17825586_SNP [dm3] 2R_21938081_SNP [dm6]	G	A	5.911e^-4	1	INTRON Fili
2L	3816763	2L_3816763_SNP [dm3] 2L_3816763_SNP [dm6]	A	T	5.927e^-4	1	UPSTREAM CR44077 DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3924662	2L_3924662_SNP [dm3] 2L_3924662_SNP [dm6]	T	A	5.932e^-4	1	INTRON fred
X	12328628	X_12328628_SNP [dm3] X_12434595_SNP [dm6]	A	T	5.940e^-4	1	INTRON Pkcdelta
2L	1111676	2L_1111676_SNP [dm3] 2L_1111676_SNP [dm6]	C	T	5.940e^-4	1	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo
X	12886878	X_12886878_SNP [dm3] X_12992845_SNP [dm6]	C	A	5.948e^-4	1	INTRON rad
2R	16657187	2R_16657187_SNP [dm3] 2R_20769682_SNP [dm6]	G	T	5.948e^-4	1	INTERGENIC
3L	4800702	3L_4800702_SNP [dm3] 3L_4800702_SNP [dm6]	C	A	5.961e^-4	1	DOWNSTREAM CR45740 INTERGENIC
2L	3610657	2L_3610657_SNP [dm3] 2L_3610657_SNP [dm6]	C	A	5.974e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5853953	3L_5853953_SNP [dm3] 3L_5860853_SNP [dm6]	A	G	5.991e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	7474865	3L_7474865_SNP [dm3] 3L_7481765_SNP [dm6]	G	C	5.994e^-4	1	INTERGENIC
2R	2783515	2R_2783515_SNP [dm3] 2R_6896010_SNP [dm6]	A	G	6.013e^-4	1	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3L	17605561	3L_17605561_SNP [dm3] 3L_17612461_SNP [dm6]	C	T	6.018e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17605562	3L_17605562_SNP [dm3] 3L_17612462_SNP [dm6]	G	A	6.018e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25775133	3R_25775133_SNP [dm3] 3R_29949411_SNP [dm6]	A	C	6.028e^-4	1	INTERGENIC
X	6346818	X_6346818_SNP [dm3] X_6452785_SNP [dm6]	T	A	6.029e^-4	1	INTRON CG42340
X	6346823	X_6346823_SNP [dm3] X_6452790_SNP [dm6]	A	T	6.029e^-4	1	INTRON CG42340
3L	10595382	3L_10595382_SNP [dm3] 3L_10602282_SNP [dm6]	T	G	6.058e^-4	1	INTERGENIC
2R	9356044	2R_9356044_SNP [dm3] 2R_13468539_SNP [dm6]	C	T	6.059e^-4	1	INTRON arr	TF binding site mE1_TFBS_chinmo
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	6.069e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10110260	3L_10110260_SNP [dm3] 3L_10117160_SNP [dm6]	T	G	6.095e^-4	1	INTRON dpr6
X	2193612	X_2193612_SNP [dm3] X_2299579_SNP [dm6]	C	T	6.096e^-4	1	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9584347	3R_9584347_SNP [dm3] 3R_13758625_SNP [dm6]	A	G	6.111e^-4	1	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6346814	X_6346814_SNP [dm3] X_6452781_SNP [dm6]	T	G	6.116e^-4	1	INTRON CG42340
2L	3092614	2L_3092614_SNP [dm3] 2L_3092614_SNP [dm6]	C	G	6.118e^-4	1	INTRON toc
2R	9952973	2R_9952973_SNP [dm3] 2R_14065468_SNP [dm6]	C	T	6.120e^-4	1	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9953006	2R_9953006_SNP [dm3] 2R_14065501_SNP [dm6]	A	G	6.120e^-4	1	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18465841	3L_18465841_SNP [dm3] 3L_18472741_SNP [dm6]	A	T	6.127e^-4	1	UPSTREAM Met75Ca INTERGENIC
3L	797899	3L_797899_SNP [dm3] 3L_797899_SNP [dm6]	A	G	6.139e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	18664276	3R_18664276_SNP [dm3] 3R_22838554_SNP [dm6]	C	T	6.140e^-4	1	INTERGENIC
2L	91806	2L_91806_SNP [dm3] 2L_91806_SNP [dm6]	T	G	6.149e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11867372	X_11867372_SNP [dm3] X_11973339_SNP [dm6]	T	C	6.155e^-4	1	SYNONYMOUS_CODING cac
2R	11897746	2R_11897746_SNP [dm3] 2R_16010241_SNP [dm6]	C	A	6.169e^-4	1	NON_SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16095719	2R_16095719_SNP [dm3] 2R_20208214_SNP [dm6]	G	A	6.172e^-4	1	INTERGENIC
X	6479863	X_6479863_SNP [dm3] X_6585830_SNP [dm6]	T	C	6.176e^-4	1	DOWNSTREAM CG34417 INTRON CG34417
3L	11597985	3L_11597985_SNP [dm3] 3L_11604885_SNP [dm6]	T	A	6.178e^-4	1	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
3L	16241848	3L_16241848_SNP [dm3] 3L_16248748_SNP [dm6]	T	A	6.179e^-4	1	DOWNSTREAM CG13055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10946092	3R_10946092_SNP [dm3] 3R_15120370_SNP [dm6]	G	A	6.180e^-4	1	INTRON CG42788
3R	24810751	3R_24810751_SNP [dm3] 3R_28985029_SNP [dm6]	C	T	6.182e^-4	1	INTERGENIC
2L	10178761	2L_10178761_SNP [dm3] 2L_10178761_SNP [dm6]	G	A	6.189e^-4	1	INTRON CG44153
X	13128303	X_13128303_SNP [dm3] X_13234270_SNP [dm6]	T	C	6.202e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7603991	2L_7603991_SNP [dm3] 2L_7603991_SNP [dm6]	A	T	6.217e^-4	1	UPSTREAM CR45370 INTERGENIC
3L	14844135	3L_14844135_SNP [dm3] 3L_14851035_SNP [dm6]	G	A	6.225e^-4	1	INTRON CG17839
2R	10171811	2R_10171811_SNP [dm3] 2R_14284306_SNP [dm6]	T	A	6.228e^-4	1	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17141991	X_17141991_DEL [dm3] X_17247958_DEL [dm6]	ACCAATGGCATAA...	A	6.233e^-4	1	UPSTREAM CG42854 DOWNSTREAM CG8675 INTRON f
2R	19899780	2R_19899780_SNP [dm3] 2R_24012257_SNP [dm6]	G	T	6.262e^-4	1	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19427953	3L_19427953_SNP [dm3] 3L_19434853_SNP [dm6]	C	A	6.262e^-4	1	INTERGENIC
3L	14292657	3L_14292657_SNP [dm3] 3L_14299557_SNP [dm6]	T	A	6.266e^-4	1	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23660190	3R_23660190_SNP [dm3] 3R_27834468_SNP [dm6]	G	C	6.267e^-4	1	INTRON CG34353
3R	9684685	3R_9684685_SNP [dm3] 3R_13858963_SNP [dm6]	G	C	6.274e^-4	1	INTERGENIC
2L	891788	2L_891788_SNP [dm3] 2L_891788_SNP [dm6]	A	T	6.276e^-4	1	INTERGENIC
3L	18690158	3L_18690158_SNP [dm3] 3L_18697058_SNP [dm6]	C	A	6.279e^-4	1	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
X	14083941	X_14083941_SNP [dm3] X_14189908_SNP [dm6]	G	A	6.289e^-4	1	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
2L	13330234	2L_13330234_SNP [dm3] 2L_13330234_SNP [dm6]	C	T	6.299e^-4	1	INTRON CG43778
3L	9725414	3L_9725414_SNP [dm3] 3L_9732314_SNP [dm6]	T	C	6.309e^-4	1	SYNONYMOUS_CODING CG6749	TF binding site mE1_TFBS_cad
3L	11520180	3L_11520180_SNP [dm3] 3L_11527080_SNP [dm6]	G	A	6.323e^-4	1	INTRON Mob2	TF binding site mE1_TFBS_HSA
3R	9765835	3R_9765835_SNP [dm3] 3R_13940113_SNP [dm6]	T	C	6.326e^-4	1	INTERGENIC
X	9793250	X_9793250_SNP [dm3] X_9899217_SNP [dm6]	C	A	6.331e^-4	1	START_GAINED CG15249 UTR_5_PRIME CG15249 INTRON CG15249
3L	12361139	3L_12361139_SNP [dm3] 3L_12368039_SNP [dm6]	A	T	6.331e^-4	1	DOWNSTREAM Ncc69 INTERGENIC
2L	1927293	2L_1927293_SNP [dm3] 2L_1927293_SNP [dm6]	A	G	6.336e^-4	1	UPSTREAM CG7337 INTRON CG7337
3L	8278603	3L_8278603_SNP [dm3] 3L_8285503_SNP [dm6]	G	T	6.350e^-4	1	INTRON cert	TF binding site mE1_TFBS_Trl
X	17260982	X_17260982_SNP [dm3] X_17366949_SNP [dm6]	G	A	6.354e^-4	1	INTERGENIC
2L	3780752	2L_3780752_SNP [dm3] 2L_3780752_SNP [dm6]	C	A	6.354e^-4	1	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2668227	2L_2668227_SNP [dm3] 2L_2668227_SNP [dm6]	G	A	6.357e^-4	1	INTERGENIC
2L	1161017	2L_1161017_SNP [dm3] 2L_1161017_SNP [dm6]	C	T	6.374e^-4	1	SYNONYMOUS_CODING CG5080 DOWNSTREAM Tango14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11430428	3L_11430428_SNP [dm3] 3L_11437328_SNP [dm6]	C	T	6.375e^-4	1	INTERGENIC
3R	15529515	3R_15529515_SNP [dm3] 3R_19703793_SNP [dm6]	C	G	6.375e^-4	1	INTERGENIC
3R	26080169	3R_26080169_DEL [dm3] 3R_30254447_DEL [dm6]	GTATT	G	6.376e^-4	1	DOWNSTREAM CG18404 INTERGENIC
2L	10151400	2L_10151400_SNP [dm3] 2L_10151400_SNP [dm6]	G	A	6.382e^-4	1	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	18690156	3L_18690156_SNP [dm3] 3L_18697056_SNP [dm6]	C	A	6.385e^-4	1	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
X	17897093	X_17897093_SNP [dm3] X_18003060_SNP [dm6]	T	A	6.389e^-4	1	INTRON Sh
3L	9807949	3L_9807949_SNP [dm3] 3L_9814849_SNP [dm6]	G	A	6.392e^-4	1	INTRON CG43897
X	16015617	X_16015617_SNP [dm3] X_16121584_SNP [dm6]	T	C	6.392e^-4	1	SYNONYMOUS_CODING disco-r	TF binding site mE1_TFBS_chinmo
2L	3934265	2L_3934265_SNP [dm3] 2L_3934265_SNP [dm6]	C	T	6.394e^-4	1	INTRON fred
2L	4063756	2L_4063756_SNP [dm3] 2L_4063756_SNP [dm6]	C	T	6.395e^-4	1	INTRON ed

By genomic position
Variant impact
Gene name

LT50_Pseudomonas_Aer phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results