DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.945e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.003644

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	11.4806	0.0032

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2070 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19643800	3R_19643800_SNP [dm3] 3R_23818078_SNP [dm6]	T	G	7.224e^-7	0.869	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5122461	2R_5122461_SNP [dm3] 2R_9234956_SNP [dm6]	T	C	9.262e^-7	0.869	SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19903391	2L_19903391_SNP [dm3] 2L_19903391_SNP [dm6]	G	T	1.473e^-6	0.876	INTRON sick
2L	1058280	2L_1058280_INS [dm3] 2L_1058280_INS [dm6]	A	AC	2.236e^-6	0.876	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	19903409	2L_19903409_DEL [dm3] 2L_19903409_DEL [dm6]	GAG	G	3.248e^-6	0.876	INTRON sick
X	17174145	X_17174145_SNP [dm3] X_17280112_SNP [dm6]	G	A	3.523e^-6	0.876	SYNONYMOUS_CODING f DOWNSTREAM CG8664	TF binding site mE1_TFBS_chinmo
3R	23283545	3R_23283545_SNP [dm3] 3R_27457823_SNP [dm6]	G	C	4.077e^-6	0.876	INTERGENIC
2L	11209097	2L_11209097_SNP [dm3] 2L_11209097_SNP [dm6]	A	G	4.686e^-6	0.876	INTERGENIC	silencer mE1_HDAC_PRE
2L	11386763	2L_11386763_SNP [dm3] 2L_11386763_SNP [dm6]	C	A	4.855e^-6	0.876	INTERGENIC	regulatory region REDfly_CRMs
3R	19643822	3R_19643822_SNP [dm3] 3R_23818100_SNP [dm6]	G	A	5.022e^-6	0.876	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11986710	2R_11986710_SNP [dm3] 2R_16099205_SNP [dm6]	T	C	5.623e^-6	0.876	SYNONYMOUS_CODING mRpL34 UPSTREAM Dg DOWNSTREAM CG8414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19903429	2L_19903429_SNP [dm3] 2L_19903429_SNP [dm6]	G	T	5.807e^-6	0.876	INTRON sick
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	6.598e^-6	0.876	INTRON CG34355
2L	19914880	2L_19914880_SNP [dm3] 2L_19914880_SNP [dm6]	G	A	8.359e^-6	0.876	INTRON sick
X	2335453	X_2335453_SNP [dm3] X_2441420_SNP [dm6]	G	T	8.412e^-6	0.876	DOWNSTREAM tko INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12002360	3L_12002360_SNP [dm3] 3L_12009260_SNP [dm6]	A	G	9.166e^-6	0.876	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11209388	2L_11209388_SNP [dm3] 2L_11209388_SNP [dm6]	G	A	9.482e^-6	0.876	INTERGENIC	silencer mE1_HDAC_PRE
3L	5813049	3L_5813049_SNP [dm3] 3L_5819949_SNP [dm6]	A	G	9.584e^-6	0.876	INTRON vn
3R	9296968	3R_9296968_SNP [dm3] 3R_13471246_SNP [dm6]	G	A	1.022e^-5	0.876	INTERGENIC
3L	13976514	3L_13976514_SNP [dm3] 3L_13983414_SNP [dm6]	G	A	1.102e^-5	0.876	INTRON CG17364
2L	19903447	2L_19903447_SNP [dm3] 2L_19903447_SNP [dm6]	C	A	1.155e^-5	0.876	INTRON sick
2L	18869715	2L_18869715_SNP [dm3] 2L_18869715_SNP [dm6]	A	T	1.193e^-5	0.876	INTRON tup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17224527	3L_17224527_SNP [dm3] 3L_17231427_SNP [dm6]	T	A	1.196e^-5	0.876	INTRON Rbp6
2L	4484278	2L_4484278_SNP [dm3] 2L_4484278_SNP [dm6]	C	T	1.356e^-5	0.876	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23820287	3R_23820287_SNP [dm3] 3R_27994565_SNP [dm6]	T	A	1.389e^-5	0.876	INTERGENIC
2R	6719775	2R_6719775_SNP [dm3] 2R_10832270_SNP [dm6]	G	A	1.406e^-5	0.876	INTRON CG12344	TF binding site mE1_TFBS_inv
X	2513501	X_2513501_SNP [dm3] X_2619468_SNP [dm6]	G	A	1.526e^-5	0.876	SYNONYMOUS_CODING Tsp3A UPSTREAM Seipin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8435407	X_8435407_SNP [dm3] X_8541374_SNP [dm6]	T	A	1.530e^-5	0.876	INTRON Nrg
2R	7045086	2R_7045086_SNP [dm3] 2R_11157581_SNP [dm6]	G	A	1.588e^-5	0.876	INTRON CG13229
2R	7045090	2R_7045090_SNP [dm3] 2R_11157585_SNP [dm6]	C	A	1.604e^-5	0.876	INTRON CG13229
2R	15381381	2R_15381381_SNP [dm3] 2R_19493876_SNP [dm6]	T	C	1.614e^-5	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
3R	21328282	3R_21328282_SNP [dm3] 3R_25502560_SNP [dm6]	A	G	1.663e^-5	0.876	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	20071390	2L_20071390_SNP [dm3] 2L_20071390_SNP [dm6]	C	G	1.696e^-5	0.876	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6183197	2R_6183197_SNP [dm3] 2R_10295692_SNP [dm6]	T	C	1.753e^-5	0.876	INTRON CAP
3R	9296979	3R_9296979_SNP [dm3] 3R_13471257_SNP [dm6]	G	A	1.761e^-5	0.876	INTERGENIC
3R	19209778	3R_19209778_SNP [dm3] 3R_23384056_SNP [dm6]	A	G	1.836e^-5	0.876	INTRON CG4393	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12765909	2R_12765909_SNP [dm3] 2R_16878404_SNP [dm6]	T	G	1.865e^-5	0.876	INTRON CG8910
3L	6605258	3L_6605258_SNP [dm3] 3L_6612158_SNP [dm6]	C	T	1.912e^-5	0.876	INTRON CG8398
3L	10456181	3L_10456181_SNP [dm3] 3L_10463081_SNP [dm6]	C	T	1.967e^-5	0.876	UTR_5_PRIME Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6888871	2R_6888871_SNP [dm3] 2R_11001366_SNP [dm6]	T	C	2.079e^-5	0.876	INTRON luna
2R	8335117	2R_8335117_SNP [dm3] 2R_12447612_SNP [dm6]	C	T	2.095e^-5	0.876	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9200615	3R_9200615_SNP [dm3] 3R_13374893_SNP [dm6]	C	A	2.123e^-5	0.876	INTRON CG9813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11604754	2R_11604754_SNP [dm3] 2R_15717249_SNP [dm6]	G	A	2.144e^-5	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12377186	2R_12377186_INS [dm3] 2R_16489681_INS [dm6]	A	ATAACGAATCGCA...	2.294e^-5	0.876	DOWNSTREAM CG33459 INTERGENIC
2R	6719683	2R_6719683_INS [dm3] 2R_10832178_INS [dm6]	A	AAAAAACA	2.309e^-5	0.876	INTRON CG12344	TF binding site mE1_TFBS_inv
3L	10636238	3L_10636238_SNP [dm3] 3L_10643138_SNP [dm6]	C	T	2.332e^-5	0.876	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
2L	1239703	2L_1239703_SNP [dm3] 2L_1239703_SNP [dm6]	C	G	2.335e^-5	0.876	UPSTREAM CG5397 INTERGENIC
2R	12765710	2R_12765710_SNP [dm3] 2R_16878205_SNP [dm6]	G	C	2.338e^-5	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	2.469e^-5	0.876	INTRON CG34355
2R	14551574	2R_14551574_SNP [dm3] 2R_18664069_SNP [dm6]	G	A	2.474e^-5	0.876	DOWNSTREAM CG33136 INTERGENIC
3L	12303780	3L_12303780_SNP [dm3] 3L_12310680_SNP [dm6]	A	G	2.524e^-5	0.876	UPSTREAM CG44355 INTERGENIC
2R	7045083	2R_7045083_SNP [dm3] 2R_11157578_SNP [dm6]	T	A	2.623e^-5	0.876	INTRON CG13229
2L	19903452	2L_19903452_SNP [dm3] 2L_19903452_SNP [dm6]	A	T	2.661e^-5	0.876	INTRON sick
3R	19362708	3R_19362708_SNP [dm3] 3R_23536986_SNP [dm6]	A	C	2.688e^-5	0.876	UPSTREAM CG16732 DOWNSTREAM CG10168 INTERGENIC
3L	3198213	3L_3198213_SNP [dm3] 3L_3198213_SNP [dm6]	A	T	2.706e^-5	0.876	UTR_3_PRIME CG32276 UPSTREAM CG14966 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	14325974	2R_14325974_SNP [dm3] 2R_18438469_SNP [dm6]	T	G	2.807e^-5	0.876	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1239750	2L_1239750_SNP [dm3] 2L_1239750_SNP [dm6]	G	A	2.821e^-5	0.876	UPSTREAM CG5397 INTERGENIC
2R	15307510	2R_15307510_SNP [dm3] 2R_19420005_SNP [dm6]	G	T	2.839e^-5	0.876	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17878716	2L_17878716_SNP [dm3] 2L_17878716_SNP [dm6]	G	T	2.889e^-5	0.876	INTERGENIC
2L	13911007	2L_13911007_SNP [dm3] 2L_13911007_SNP [dm6]	G	A	2.958e^-5	0.876	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2R	8536921	2R_8536921_SNP [dm3] 2R_12649416_SNP [dm6]	C	T	2.993e^-5	0.876	INTERGENIC
3L	3780832	3L_3780832_SNP [dm3] 3L_3780832_SNP [dm6]	T	C	3.109e^-5	0.876	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21731051	3R_21731051_DEL [dm3] 3R_25905329_DEL [dm6]	TT	T	3.304e^-5	0.876	DOWNSTREAM CR43259 INTRON CR43259
2L	20761395	2L_20761395_SNP [dm3] 2L_20761395_SNP [dm6]	T	A	3.330e^-5	0.876	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7053451	2R_7053451_SNP [dm3] 2R_11165946_SNP [dm6]	A	G	3.352e^-5	0.876	INTRON shn & 1 other
2R	4515753	2R_4515753_SNP [dm3] 2R_8628248_SNP [dm6]	C	G	3.381e^-5	0.876	SYNONYMOUS_CODING CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12765912	2R_12765912_SNP [dm3] 2R_16878407_SNP [dm6]	A	C	3.414e^-5	0.876	INTRON CG8910
X	3640554	X_3640554_SNP [dm3] X_3746521_SNP [dm6]	G	A	3.439e^-5	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	2710848	X_2710848_SNP [dm3] X_2816815_SNP [dm6]	T	A	3.481e^-5	0.876	INTRON kirre
2L	19921261	2L_19921261_SNP [dm3] 2L_19921261_SNP [dm6]	T	G	3.533e^-5	0.876	INTRON sick EXON CR43828
2R	18162943	2R_18162943_SNP [dm3] 2R_22275438_SNP [dm6]	C	T	3.537e^-5	0.876	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18940177	3R_18940177_DEL [dm3] 3R_23114455_DEL [dm6]	ATG	A	3.550e^-5	0.876	UTR_3_PRIME Rassf
3R	22457559	3R_22457559_SNP [dm3] 3R_26631837_SNP [dm6]	C	T	3.577e^-5	0.876	UPSTREAM TwdlN INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3852410	3R_3852410_SNP [dm3] 3R_8026688_SNP [dm6]	A	T	3.605e^-5	0.876	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12759532	2R_12759532_SNP [dm3] 2R_16872027_SNP [dm6]	T	G	3.649e^-5	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13118092	2L_13118092_DEL [dm3] 2L_13118092_DEL [dm6]	AATATTGAACATTTTA...	A	3.666e^-5	0.876	DOWNSTREAM CR44198 INTERGENIC
2L	7587476	2L_7587476_SNP [dm3] 2L_7587476_SNP [dm6]	C	A	3.776e^-5	0.876	INTERGENIC
2R	6719774	2R_6719774_SNP [dm3] 2R_10832269_SNP [dm6]	T	C	3.814e^-5	0.876	INTRON CG12344	TF binding site mE1_TFBS_inv
X	17175032	X_17175032_SNP [dm3] X_17280999_SNP [dm6]	C	A	3.921e^-5	0.876	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2L	12523617	2L_12523617_SNP [dm3] 2L_12523617_SNP [dm6]	C	T	3.962e^-5	0.876	INTRON bun
2R	14551581	2R_14551581_INS [dm3] 2R_18664076_INS [dm6]	T	TTT	3.971e^-5	0.876	DOWNSTREAM CG33136 INTERGENIC
3R	19883670	3R_19883670_SNP [dm3] 3R_24057948_SNP [dm6]	G	T	3.994e^-5	0.876	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9880931	3R_9880931_SNP [dm3] 3R_14055209_SNP [dm6]	C	T	4.069e^-5	0.876	INTERGENIC
3L	16705757	3L_16705757_SNP [dm3] 3L_16712657_SNP [dm6]	C	A	4.243e^-5	0.876	UTR_5_PRIME Dab UPSTREAM Lasp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8327888	2R_8327888_SNP [dm3] 2R_12440383_SNP [dm6]	C	T	4.369e^-5	0.876	DOWNSTREAM CG30334 INTRON Dyb
3L	6820253	3L_6820253_SNP [dm3] 3L_6827153_SNP [dm6]	C	A	4.377e^-5	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21328315	3R_21328315_SNP [dm3] 3R_25502593_SNP [dm6]	T	C	4.406e^-5	0.876	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA
X	21251248	X_21251248_SNP [dm3] X_21380221_SNP [dm6]	C	T	4.437e^-5	0.876	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19901256	2L_19901256_SNP [dm3] 2L_19901256_SNP [dm6]	A	T	4.454e^-5	0.876	INTRON sick
2R	11676640	2R_11676640_SNP [dm3] 2R_15789135_SNP [dm6]	C	T	4.465e^-5	0.876	INTRON Zasp52
3R	19885149	3R_19885149_SNP [dm3] 3R_24059427_SNP [dm6]	C	T	4.542e^-5	0.876	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
2R	3171270	2R_3171270_SNP [dm3] 2R_7283765_SNP [dm6]	A	G	4.565e^-5	0.876	INTRON pwn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9490370	2R_9490370_SNP [dm3] 2R_13602865_SNP [dm6]	T	C	4.703e^-5	0.876	INTERGENIC
2L	20071507	2L_20071507_SNP [dm3] 2L_20071507_SNP [dm6]	G	A	4.704e^-5	0.876	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12759612	2R_12759612_SNP [dm3] 2R_16872107_SNP [dm6]	T	G	4.784e^-5	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7217931	2L_7217931_SNP [dm3] 2L_7217931_SNP [dm6]	C	A	4.834e^-5	0.876	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11987323	2R_11987323_SNP [dm3] 2R_16099818_SNP [dm6]	T	C	4.844e^-5	0.876	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14586168	2R_14586168_SNP [dm3] 2R_18698663_SNP [dm6]	T	G	4.877e^-5	0.876	INTRON Sik3
2R	8335306	2R_8335306_SNP [dm3] 2R_12447801_SNP [dm6]	C	T	4.951e^-5	0.876	SYNONYMOUS_CODING Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12765921	2R_12765921_SNP [dm3] 2R_16878416_SNP [dm6]	T	A	4.963e^-5	0.876	INTRON CG8910
3R	17147209	3R_17147209_SNP [dm3] 3R_21321487_SNP [dm6]	T	A	4.997e^-5	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
2R	6132262	2R_6132262_SNP [dm3] 2R_10244757_SNP [dm6]	T	C	5.042e^-5	0.876	INTRON Hdc
2R	9969900	2R_9969900_SNP [dm3] 2R_14082395_SNP [dm6]	C	A	5.059e^-5	0.876	INTRON Prosap
2L	7217926	2L_7217926_SNP [dm3] 2L_7217926_SNP [dm6]	G	T	5.135e^-5	0.876	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6974274	2R_6974274_SNP [dm3] 2R_11086769_SNP [dm6]	C	T	5.199e^-5	0.876	UTR_5_PRIME CG43189 INTRON luna & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	17143262	3R_17143262_SNP [dm3] 3R_21317540_SNP [dm6]	A	G	5.201e^-5	0.876	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
2R	12766026	2R_12766026_SNP [dm3] 2R_16878521_SNP [dm6]	G	A	5.259e^-5	0.876	INTRON CG8910
2R	1561955	2R_1561955_SNP [dm3] 2R_5674450_SNP [dm6]	T	A	5.317e^-5	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	3645153	X_3645153_SNP [dm3] X_3751120_SNP [dm6]	G	A	5.442e^-5	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5124606	2R_5124606_SNP [dm3] 2R_9237101_SNP [dm6]	A	C	5.498e^-5	0.876	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
X	17175065	X_17175065_DEL [dm3] X_17281032_DEL [dm6]	AATGCGAGCGCGAAATTTTA...	A	5.537e^-5	0.876	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2R	4149661	2R_4149661_INS [dm3] 2R_8262156_INS [dm6]	T	TT	5.556e^-5	0.876	UPSTREAM CG2291 DOWNSTREAM CG12126 INTERGENIC
X	5059848	X_5059848_SNP [dm3] X_5165815_SNP [dm6]	T	A	5.566e^-5	0.876	INTRON rg & 1 other
3L	5812884	3L_5812884_SNP [dm3] 3L_5819784_SNP [dm6]	T	C	5.601e^-5	0.876	INTRON vn
X	14562215	X_14562215_SNP [dm3] X_14668182_SNP [dm6]	C	G	5.615e^-5	0.876	INTERGENIC
3L	6092809	3L_6092809_SNP [dm3] 3L_6099709_SNP [dm6]	A	G	5.686e^-5	0.876	INTRON Ets65A
3L	4965505	3L_4965505_SNP [dm3] 3L_4965505_SNP [dm6]	G	T	5.711e^-5	0.876	INTRON Con
2R	11606930	2R_11606930_SNP [dm3] 2R_15719425_SNP [dm6]	T	C	5.731e^-5	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15730929	3L_15730929_SNP [dm3] 3L_15737829_SNP [dm6]	G	A	5.751e^-5	0.876	INTERGENIC
2L	2085873	2L_2085873_SNP [dm3] 2L_2085873_SNP [dm6]	C	T	5.819e^-5	0.876	INTRON dpr3
2R	14551634	2R_14551634_SNP [dm3] 2R_18664129_SNP [dm6]	T	C	5.838e^-5	0.876	DOWNSTREAM CG33136 INTERGENIC
2L	702221	2L_702221_SNP [dm3] 2L_702221_SNP [dm6]	G	A	5.904e^-5	0.876	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	6820252	3L_6820252_SNP [dm3] 3L_6827152_SNP [dm6]	T	C	5.935e^-5	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5812620	3L_5812620_SNP [dm3] 3L_5819520_SNP [dm6]	T	C	5.950e^-5	0.876	INTRON vn
3R	19633446	3R_19633446_SNP [dm3] 3R_23807724_SNP [dm6]	T	C	6.113e^-5	0.876	NON_SYNONYMOUS_CODING CG33111 DOWNSTREAM eIF4G2 INTRON CG34355
3L	6784072	3L_6784072_SNP [dm3] 3L_6790972_SNP [dm6]	T	C	6.182e^-5	0.876	SYNONYMOUS_CODING vvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12765896	2R_12765896_SNP [dm3] 2R_16878391_SNP [dm6]	A	G	6.211e^-5	0.876	INTRON CG8910
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	6.247e^-5	0.876	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	11209442	2L_11209442_SNP [dm3] 2L_11209442_SNP [dm6]	G	T	6.262e^-5	0.876	INTERGENIC	silencer mE1_HDAC_PRE
X	9183971	X_9183971_SNP [dm3] X_9289938_SNP [dm6]	G	A	6.351e^-5	0.876	INTRON lz
3R	21328306	3R_21328306_SNP [dm3] 3R_25502584_SNP [dm6]	T	C	6.509e^-5	0.876	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA
X	13099327	X_13099327_SNP [dm3] X_13205294_SNP [dm6]	A	T	6.550e^-5	0.876	INTRON sno
3R	17147179	3R_17147179_SNP [dm3] 3R_21321457_SNP [dm6]	T	A	6.568e^-5	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	17147181	3R_17147181_DEL [dm3] 3R_21321459_DEL [dm6]	CA	T	6.568e^-5	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	17147208	3R_17147208_SNP [dm3] 3R_21321486_SNP [dm6]	G	A	6.568e^-5	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
2R	12765897	2R_12765897_SNP [dm3] 2R_16878392_SNP [dm6]	T	C	6.586e^-5	0.876	INTRON CG8910
2R	13864531	2R_13864531_SNP [dm3] 2R_17977026_SNP [dm6]	T	A	6.619e^-5	0.876	INTRON dpr13
2L	19932361	2L_19932361_SNP [dm3] 2L_19932361_SNP [dm6]	C	T	6.745e^-5	0.876	INTRON sick
X	5970028	X_5970028_SNP [dm3] X_6075995_SNP [dm6]	G	A	6.947e^-5	0.876	DOWNSTREAM CG4666 INTERGENIC
2L	19915744	2L_19915744_SNP [dm3] 2L_19915744_SNP [dm6]	A	T	7.065e^-5	0.876	INTRON sick	TF binding site mE1_TFBS_bab1
2R	4149625	2R_4149625_SNP [dm3] 2R_8262120_SNP [dm6]	A	G	7.067e^-5	0.876	UPSTREAM CG2291 DOWNSTREAM CG12126 INTERGENIC
2R	17595501	2R_17595501_SNP [dm3] 2R_21707996_SNP [dm6]	G	A	7.070e^-5	0.876	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1287773	2L_1287773_SNP [dm3] 2L_1287773_SNP [dm6]	T	C	7.088e^-5	0.876	INTRON robo3
2L	11208039	2L_11208039_SNP [dm3] 2L_11208039_SNP [dm6]	G	C	7.128e^-5	0.876	INTERGENIC
X	5333736	X_5333736_SNP [dm3] X_5439703_SNP [dm6]	G	T	7.147e^-5	0.876	INTERGENIC
2R	12765973	2R_12765973_SNP [dm3] 2R_16878468_SNP [dm6]	T	C	7.219e^-5	0.876	INTRON CG8910
3L	15730930	3L_15730930_SNP [dm3] 3L_15737830_SNP [dm6]	T	C	7.340e^-5	0.876	INTERGENIC
2L	2647001	2L_2647001_SNP [dm3] 2L_2647001_SNP [dm6]	A	T	7.369e^-5	0.876	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CR43852	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4489205	2L_4489205_SNP [dm3] 2L_4489205_SNP [dm6]	C	A	7.394e^-5	0.876	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	8073717	2L_8073717_SNP [dm3] 2L_8073717_SNP [dm6]	T	C	7.437e^-5	0.876	UTR_3_PRIME Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17142034	3R_17142034_SNP [dm3] 3R_21316312_SNP [dm6]	T	A	7.445e^-5	0.876	UPSTREAM mir-4951 EXON Hsromega
3R	17143735	3R_17143735_SNP [dm3] 3R_21318013_SNP [dm6]	G	T	7.448e^-5	0.876	DOWNSTREAM CG16791 & 1 other INTERGENIC
2L	11925129	2L_11925129_SNP [dm3] 2L_11925129_SNP [dm6]	C	T	7.483e^-5	0.876	INTRON Pde1c
2R	14816718	2R_14816718_SNP [dm3] 2R_18929213_SNP [dm6]	A	T	7.543e^-5	0.876	INTRON sano
2R	12765757	2R_12765757_SNP [dm3] 2R_16878252_SNP [dm6]	A	C	7.602e^-5	0.876	INTRON CG8910
3R	22460895	3R_22460895_SNP [dm3] 3R_26635173_SNP [dm6]	T	C	7.619e^-5	0.876	SYNONYMOUS_CODING TwdlR DOWNSTREAM TwdlH
2L	20564769	2L_20564769_SNP [dm3] 2L_20564769_SNP [dm6]	A	T	7.633e^-5	0.876	INTRON CR45347
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	7.633e^-5	0.876	INTRON CG8910
2L	12827921	2L_12827921_SNP [dm3] 2L_12827921_SNP [dm6]	A	G	7.765e^-5	0.876	INTERGENIC
2L	11104497	2L_11104497_SNP [dm3] 2L_11104497_SNP [dm6]	T	C	7.767e^-5	0.876	SYNONYMOUS_CODING Reps
3L	4179039	3L_4179039_SNP [dm3] 3L_4179039_SNP [dm6]	G	A	7.797e^-5	0.876	UTR_3_PRIME Teh2 UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
2L	7166178	2L_7166178_SNP [dm3] 2L_7166178_SNP [dm6]	G	A	7.808e^-5	0.876	INTERGENIC
2R	4626317	2R_4626317_SNP [dm3] 2R_8738812_SNP [dm6]	C	A	7.848e^-5	0.876	INTRON CG8740
2R	12759608	2R_12759608_SNP [dm3] 2R_16872103_SNP [dm6]	A	G	7.856e^-5	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17142035	3R_17142035_SNP [dm3] 3R_21316313_SNP [dm6]	C	T	7.890e^-5	0.876	UPSTREAM mir-4951 EXON Hsromega
2R	12765695	2R_12765695_SNP [dm3] 2R_16878190_SNP [dm6]	G	A	7.989e^-5	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad
2R	3609361	2R_3609361_SNP [dm3] 2R_7721856_SNP [dm6]	G	A	8.021e^-5	0.876	INTRON CG18812
X	8366106	X_8366106_INS [dm3] X_8472073_INS [dm6]	A	AC	8.030e^-5	0.876	INTRON CG33223 & 1 other
2L	12636328	2L_12636328_SNP [dm3] 2L_12636328_SNP [dm6]	A	G	8.040e^-5	0.876	INTRON Ref2
2R	12759503	2R_12759503_SNP [dm3] 2R_16871998_SNP [dm6]	A	T	8.079e^-5	0.876	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26473773	3R_26473773_SNP [dm3] 3R_30648051_SNP [dm6]	T	G	8.090e^-5	0.876	NON_SYNONYMOUS_CODING PH4alphaPV
3L	3197821	3L_3197821_SNP [dm3] 3L_3197821_SNP [dm6]	A	T	8.117e^-5	0.876	UPSTREAM CG14966 DOWNSTREAM CG32276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12557076	3L_12557076_DEL [dm3] 3L_12563976_DEL [dm6]	ACATGAAAGGTAAAA...	A	8.149e^-5	0.876	INTRON sowah
2R	12765899	2R_12765899_SNP [dm3] 2R_16878394_SNP [dm6]	G	T	8.223e^-5	0.876	INTRON CG8910
3R	19003483	3R_19003483_SNP [dm3] 3R_23177761_SNP [dm6]	T	C	8.347e^-5	0.876	UPSTREAM Irk1 INTRON Irk1
3L	8953278	3L_8953278_SNP [dm3] 3L_8960178_SNP [dm6]	G	A	8.377e^-5	0.876	SYNONYMOUS_CODING CG13313	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12765800	2R_12765800_SNP [dm3] 2R_16878295_SNP [dm6]	T	G	8.400e^-5	0.876	INTRON CG8910
2R	16804931	2R_16804931_SNP [dm3] 2R_20917426_SNP [dm6]	A	C	8.444e^-5	0.876	INTRON Rx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	17144646	3R_17144646_SNP [dm3] 3R_21318924_SNP [dm6]	A	T	8.508e^-5	0.876	UTR_3_PRIME CG16791
3R	17142195	3R_17142195_SNP [dm3] 3R_21316473_SNP [dm6]	G	T	8.514e^-5	0.876	UPSTREAM mir-4951 EXON Hsromega
2L	19901307	2L_19901307_SNP [dm3] 2L_19901307_SNP [dm6]	G	A	8.597e^-5	0.876	INTRON sick
2R	14551525	2R_14551525_DEL [dm3] 2R_18664020_DEL [dm6]	AT	A	8.612e^-5	0.876	DOWNSTREAM CG33136 INTERGENIC
2L	4488134	2L_4488134_SNP [dm3] 2L_4488134_SNP [dm6]	C	T	8.751e^-5	0.876	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14551635	2R_14551635_SNP [dm3] 2R_18664130_SNP [dm6]	A	T	8.862e^-5	0.876	DOWNSTREAM CG33136 INTERGENIC
2R	11686874	2R_11686874_SNP [dm3] 2R_15799369_SNP [dm6]	C	A	8.923e^-5	0.876	INTRON Zasp52 & 1 other
X	5970013	X_5970013_SNP [dm3] X_6075980_SNP [dm6]	T	C	8.930e^-5	0.876	DOWNSTREAM CG4666 INTERGENIC
2R	4709724	2R_4709724_SNP [dm3] 2R_8822219_SNP [dm6]	A	C	8.953e^-5	0.876	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	12985075	2L_12985075_SNP [dm3] 2L_12985075_SNP [dm6]	A	G	9.061e^-5	0.876	INTERGENIC
X	3643326	X_3643326_SNP [dm3] X_3749293_SNP [dm6]	T	A	9.081e^-5	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7815978	2R_7815978_SNP [dm3] 2R_11928473_SNP [dm6]	T	C	9.093e^-5	0.876	DOWNSTREAM CR44312 INTERGENIC
3R	19147985	3R_19147985_SNP [dm3] 3R_23322263_SNP [dm6]	G	T	9.186e^-5	0.876	INTRON pnt	TF binding site mE1_TFBS_HSA
3L	5813057	3L_5813057_SNP [dm3] 3L_5819957_SNP [dm6]	T	C	9.193e^-5	0.876	INTRON vn
X	9700749	X_9700749_SNP [dm3] X_9806716_SNP [dm6]	G	A	9.223e^-5	0.876	INTRON CG32698
2L	21731194	2L_21731194_INS [dm3] 2L_21731194_INS [dm6]	C	CATGGTGGTGAC...	9.272e^-5	0.876	INTERGENIC	transposable element FlyBase
3R	16306921	3R_16306921_SNP [dm3] 3R_20481199_SNP [dm6]	T	A	9.314e^-5	0.876	UTR_5_PRIME Gfrl INTRON Gfrl
2L	19912136	2L_19912136_DEL [dm3] 2L_19912136_DEL [dm6]	TATCTATCGACCT...	T	9.373e^-5	0.876	UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
X	13617667	X_13617667_SNP [dm3] X_13723634_SNP [dm6]	C	A	9.420e^-5	0.876	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9511459	3R_9511459_SNP [dm3] 3R_13685737_SNP [dm6]	A	T	9.459e^-5	0.876	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19464353	3R_19464353_SNP [dm3] 3R_23638631_SNP [dm6]	G	C	9.463e^-5	0.876	INTRON CG31145
2L	13270305	2L_13270305_SNP [dm3] 2L_13270305_SNP [dm6]	A	T	9.701e^-5	0.876	INTRON CG44085
3R	9880915	3R_9880915_SNP [dm3] 3R_14055193_SNP [dm6]	C	A	9.724e^-5	0.876	INTERGENIC
3R	9240253	3R_9240253_SNP [dm3] 3R_13414531_SNP [dm6]	G	A	9.732e^-5	0.876	INTRON yellow-e
3L	5812931	3L_5812931_SNP [dm3] 3L_5819831_SNP [dm6]	A	G	9.743e^-5	0.876	INTRON vn
2R	11985168	2R_11985168_SNP [dm3] 2R_16097663_SNP [dm6]	C	T	9.756e^-5	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17142076	3R_17142076_SNP [dm3] 3R_21316354_SNP [dm6]	C	T	9.808e^-5	0.876	UPSTREAM mir-4951 EXON Hsromega
3R	17142070	3R_17142070_SNP [dm3] 3R_21316348_SNP [dm6]	A	T	9.840e^-5	0.876	UPSTREAM mir-4951 EXON Hsromega
X	16038456	X_16038456_SNP [dm3] X_16144423_SNP [dm6]	A	G	9.889e^-5	0.876	INTRON disco-r
2R	11640083	2R_11640083_SNP [dm3] 2R_15752578_SNP [dm6]	C	T	1.004e^-4	0.876	INTRON CG30089
3R	24401257	3R_24401257_SNP [dm3] 3R_28575535_SNP [dm6]	G	C	1.012e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11213142	2L_11213142_SNP [dm3] 2L_11213142_SNP [dm6]	T	C	1.015e^-4	0.876	INTRON ab
2R	6129806	2R_6129806_SNP [dm3] 2R_10242301_SNP [dm6]	A	G	1.017e^-4	0.876	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3640581	X_3640581_SNP [dm3] X_3746548_SNP [dm6]	A	G	1.025e^-4	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	9321599	3L_9321599_SNP [dm3] 3L_9328499_SNP [dm6]	C	T	1.031e^-4	0.876	INTERGENIC
2L	4297855	2L_4297855_DEL [dm3] 2L_4297855_DEL [dm6]	TGGAT	T	1.032e^-4	0.876	INTRON tutl
2L	12959641	2L_12959641_INS [dm3] 2L_12959641_INS [dm6]	T	TTTTTACCAT	1.043e^-4	0.876	INTERGENIC
3L	16457874	3L_16457874_SNP [dm3] 3L_16464774_SNP [dm6]	C	G	1.048e^-4	0.876	INTRON CG33158
3R	9103177	3R_9103177_SNP [dm3] 3R_13277455_SNP [dm6]	A	G	1.048e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5812664	3L_5812664_SNP [dm3] 3L_5819564_SNP [dm6]	A	G	1.049e^-4	0.876	INTRON vn
3R	21334848	3R_21334848_SNP [dm3] 3R_25509126_SNP [dm6]	C	G	1.060e^-4	0.876	DOWNSTREAM CG5111 INTERGENIC
2L	8715228	2L_8715228_SNP [dm3] 2L_8715228_SNP [dm6]	G	A	1.062e^-4	0.876	UPSTREAM raw INTRON raw
2R	12765690	2R_12765690_SNP [dm3] 2R_16878185_SNP [dm6]	T	C	1.062e^-4	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad
2R	15518826	2R_15518826_SNP [dm3] 2R_19631321_SNP [dm6]	C	T	1.067e^-4	0.876	UTR_5_PRIME sm UPSTREAM sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12431241	X_12431241_SNP [dm3] X_12537208_SNP [dm6]	A	G	1.067e^-4	0.876	INTRON CG43921	TF binding site mE1_TFBS_HSA
3R	22453299	3R_22453299_SNP [dm3] 3R_26627577_SNP [dm6]	G	C	1.076e^-4	0.876	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
2L	4483789	2L_4483789_SNP [dm3] 2L_4483789_SNP [dm6]	G	A	1.076e^-4	0.876	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3794274	3L_3794274_DEL [dm3] 3L_3794274_DEL [dm6]	AGACAAGCA	A	1.078e^-4	0.876	INTRON CG32264
3R	17142804	3R_17142804_SNP [dm3] 3R_21317082_SNP [dm6]	T	A	1.080e^-4	0.876	DOWNSTREAM mir-4951 EXON Hsromega
2L	15759465	2L_15759465_SNP [dm3] 2L_15759465_SNP [dm6]	G	T	1.081e^-4	0.876	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20916282	3R_20916282_SNP [dm3] 3R_25090560_SNP [dm6]	C	A	1.082e^-4	0.876	INTERGENIC
2R	12377180	2R_12377180_SNP [dm3] 2R_16489675_SNP [dm6]	T	C	1.083e^-4	0.876	DOWNSTREAM CG33459 INTERGENIC
2L	7166251	2L_7166251_SNP [dm3] 2L_7166251_SNP [dm6]	G	C	1.101e^-4	0.876	INTERGENIC
2L	10103313	2L_10103313_SNP [dm3] 2L_10103313_SNP [dm6]	C	G	1.103e^-4	0.876	INTRON CG44153 & 1 other
3L	6024827	3L_6024827_SNP [dm3] 3L_6031727_SNP [dm6]	C	T	1.111e^-4	0.876	INTERGENIC
2R	15381429	2R_15381429_SNP [dm3] 2R_19493924_SNP [dm6]	T	A	1.112e^-4	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
3R	9267296	3R_9267296_DEL [dm3] 3R_13441574_DEL [dm6]	CACCATACCTTCACCTACAT...	C	1.113e^-4	0.876	INTERGENIC
3L	1103153	3L_1103153_SNP [dm3] 3L_1103153_SNP [dm6]	C	T	1.122e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	1.135e^-4	0.876	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
3L	3693654	3L_3693654_SNP [dm3] 3L_3693654_SNP [dm6]	G	T	1.140e^-4	0.876	DOWNSTREAM CR43485 INTERGENIC
2L	10435723	2L_10435723_SNP [dm3] 2L_10435723_SNP [dm6]	A	G	1.153e^-4	0.876	UPSTREAM holn1 & 1 other INTERGENIC
2R	8536313	2R_8536313_SNP [dm3] 2R_12648808_SNP [dm6]	G	A	1.156e^-4	0.876	UPSTREAM CG8785 INTERGENIC
3R	6347059	3R_6347059_SNP [dm3] 3R_10521337_SNP [dm6]	C	A	1.158e^-4	0.876	INTRON hth
2R	11766205	2R_11766205_SNP [dm3] 2R_15878700_SNP [dm6]	A	G	1.160e^-4	0.876	INTRON sli
3L	9298768	3L_9298768_INS [dm3] 3L_9305668_INS [dm6]	T	CAA	1.171e^-4	0.876	INTERGENIC
2R	1562100	2R_1562100_INS [dm3] 2R_5674595_INS [dm6]	T	TTTAAACTTAGAAC...	1.187e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	1.190e^-4	0.876	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
3L	12557072	3L_12557072_SNP [dm3] 3L_12563972_SNP [dm6]	A	T	1.194e^-4	0.876	INTRON sowah
2L	4305097	2L_4305097_SNP [dm3] 2L_4305097_SNP [dm6]	A	C	1.195e^-4	0.876	INTRON tutl
2R	15429835	2R_15429835_SNP [dm3] 2R_19542330_SNP [dm6]	A	G	1.205e^-4	0.876	INTRON sm
2R	11641249	2R_11641249_SNP [dm3] 2R_15753744_SNP [dm6]	T	C	1.210e^-4	0.876	INTRON CG30089
2R	12765560	2R_12765560_SNP [dm3] 2R_16878055_SNP [dm6]	A	G	1.217e^-4	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad
3R	22145848	3R_22145848_SNP [dm3] 3R_26320126_SNP [dm6]	A	T	1.226e^-4	0.876	INTRON CG33970
3R	15072411	3R_15072411_SNP [dm3] 3R_19246689_SNP [dm6]	A	C	1.229e^-4	0.876	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13061601	2R_13061601_SNP [dm3] 2R_17174096_SNP [dm6]	G	A	1.235e^-4	0.876	INTERGENIC
X	21231575	X_21231575_DEL [dm3] X_21360548_DEL [dm6]	TGATTGCT	T	1.236e^-4	0.876	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3640622	X_3640622_SNP [dm3] X_3746589_SNP [dm6]	T	A	1.243e^-4	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	6129808	2R_6129808_SNP [dm3] 2R_10242303_SNP [dm6]	T	C	1.254e^-4	0.876	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12765775	2R_12765775_SNP [dm3] 2R_16878270_SNP [dm6]	G	C	1.261e^-4	0.876	INTRON CG8910
2R	7045084	2R_7045084_SNP [dm3] 2R_11157579_SNP [dm6]	G	C	1.265e^-4	0.876	INTRON CG13229
2R	15381454	2R_15381454_SNP [dm3] 2R_19493949_SNP [dm6]	T	A	1.265e^-4	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	6229867	2R_6229867_SNP [dm3] 2R_10342362_SNP [dm6]	A	G	1.275e^-4	0.876	INTRON CG42732
2R	11292963	2R_11292963_SNP [dm3] 2R_15405458_SNP [dm6]	G	A	1.275e^-4	0.876	DOWNSTREAM CR45020 INTRON CG43729
2L	7529617	2L_7529617_SNP [dm3] 2L_7529617_SNP [dm6]	T	C	1.277e^-4	0.876	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17331842	2R_17331842_SNP [dm3] 2R_21444337_SNP [dm6]	G	T	1.284e^-4	0.876	INTRON Sdc
2L	1754767	2L_1754767_INS [dm3] 2L_1754767_INS [dm6]	G	GAG	1.285e^-4	0.876	DOWNSTREAM Gr22f INTERGENIC
3R	21328275	3R_21328275_SNP [dm3] 3R_25502553_SNP [dm6]	C	A	1.286e^-4	0.876	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5124575	2R_5124575_SNP [dm3] 2R_9237070_SNP [dm6]	T	A	1.288e^-4	0.876	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
3L	2870362	3L_2870362_SNP [dm3] 3L_2870362_SNP [dm6]	A	G	1.291e^-4	0.876	NON_SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8727634	2R_8727634_SNP [dm3] 2R_12840129_SNP [dm6]	G	A	1.292e^-4	0.876	UPSTREAM CR44453 DOWNSTREAM Cyp9h1 INTERGENIC
2L	12729441	2L_12729441_SNP [dm3] 2L_12729441_SNP [dm6]	A	T	1.297e^-4	0.876	INTRON MRP
3L	4964474	3L_4964474_SNP [dm3] 3L_4964474_SNP [dm6]	C	T	1.305e^-4	0.876	INTRON Con
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	1.309e^-4	0.876	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	16261776	3L_16261776_SNP [dm3] 3L_16268676_SNP [dm6]	C	T	1.310e^-4	0.876	UPSTREAM CG4950 & 1 other INTERGENIC
2R	15381445	2R_15381445_SNP [dm3] 2R_19493940_SNP [dm6]	T	C	1.313e^-4	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	9066519	2L_9066519_SNP [dm3] 2L_9066519_SNP [dm6]	C	G	1.329e^-4	0.876	UTR_5_PRIME CG31708
2L	13911300	2L_13911300_SNP [dm3] 2L_13911300_SNP [dm6]	G	T	1.341e^-4	0.876	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5548813	3L_5548813_SNP [dm3] 3L_5555713_SNP [dm6]	T	A	1.345e^-4	0.876	INTERGENIC
2L	20544641	2L_20544641_SNP [dm3] 2L_20544641_SNP [dm6]	A	G	1.346e^-4	0.876	INTERGENIC
2L	12445840	2L_12445840_SNP [dm3] 2L_12445840_SNP [dm6]	C	T	1.351e^-4	0.876	UTR_5_PRIME Oatp33Ea DOWNSTREAM CG5421	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	9072705	3R_9072705_SNP [dm3] 3R_13246983_SNP [dm6]	A	G	1.365e^-4	0.876	INTRON Ace
2L	19924235	2L_19924235_SNP [dm3] 2L_19924235_SNP [dm6]	G	C	1.366e^-4	0.876	DOWNSTREAM CR43827 INTRON sick
3R	22453315	3R_22453315_SNP [dm3] 3R_26627593_SNP [dm6]	T	C	1.374e^-4	0.876	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3R	17911923	3R_17911923_SNP [dm3] 3R_22086201_SNP [dm6]	T	C	1.381e^-4	0.876	UPSTREAM CG5791 INTRON CG5778
3L	9327649	3L_9327649_SNP [dm3] 3L_9334549_SNP [dm6]	T	G	1.385e^-4	0.876	INTRON PGRP-LA
2R	17883098	2R_17883098_SNP [dm3] 2R_21995593_SNP [dm6]	G	A	1.404e^-4	0.876	INTRON CG34370	TF binding site mE1_TFBS_inv
2L	13134240	2L_13134240_SNP [dm3] 2L_13134240_SNP [dm6]	A	C	1.404e^-4	0.876	SYNONYMOUS_CODING CG5122
3L	21320615	3L_21320615_SNP [dm3] 3L_21327515_SNP [dm6]	A	T	1.404e^-4	0.876	INTRON Rab26
3L	19262708	3L_19262708_SNP [dm3] 3L_19269608_SNP [dm6]	C	G	1.411e^-4	0.876	SYNONYMOUS_CODING CG14085 UPSTREAM CG9629 DOWNSTREAM CG14088
3R	9225460	3R_9225460_SNP [dm3] 3R_13399738_SNP [dm6]	A	G	1.412e^-4	0.876	INTRON CG9796	TF binding site mE1_TFBS_cad
3R	23776974	3R_23776974_SNP [dm3] 3R_27951252_SNP [dm6]	G	A	1.416e^-4	0.876	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11982474	2R_11982474_SNP [dm3] 2R_16094969_SNP [dm6]	G	A	1.418e^-4	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2R	12188254	2R_12188254_DEL [dm3] 2R_16300749_DEL [dm6]	GG	G	1.418e^-4	0.876	EXON CR45232
3R	17911870	3R_17911870_SNP [dm3] 3R_22086148_SNP [dm6]	T	A	1.422e^-4	0.876	UPSTREAM CG5791 INTRON CG5778
2R	8536630	2R_8536630_SNP [dm3] 2R_12649125_SNP [dm6]	A	G	1.427e^-4	0.876	UPSTREAM CG8785 INTERGENIC
X	3632017	X_3632017_SNP [dm3] X_3737984_SNP [dm6]	T	G	1.430e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	15759582	2L_15759582_SNP [dm3] 2L_15759582_SNP [dm6]	G	A	1.434e^-4	0.876	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15391986	2R_15391986_SNP [dm3] 2R_19504481_SNP [dm6]	G	A	1.444e^-4	0.876	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
2L	19417233	2L_19417233_SNP [dm3] 2L_19417233_SNP [dm6]	T	A	1.452e^-4	0.876	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	19417236	2L_19417236_SNP [dm3] 2L_19417236_SNP [dm6]	G	A	1.452e^-4	0.876	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	10708894	2L_10708894_DEL [dm3] 2L_10708894_DEL [dm6]	AT	A	1.453e^-4	0.876	UTR_5_PRIME Lip2
2R	8728889	2R_8728889_SNP [dm3] 2R_12841384_SNP [dm6]	A	G	1.454e^-4	0.876	SYNONYMOUS_CODING Cyp9h1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11164752	2R_11164752_SNP [dm3] 2R_15277247_SNP [dm6]	G	T	1.461e^-4	0.876	INTRON Trpm
2L	4489182	2L_4489182_SNP [dm3] 2L_4489182_SNP [dm6]	G	A	1.462e^-4	0.876	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17405700	2R_17405700_SNP [dm3] 2R_21518195_SNP [dm6]	G	C	1.468e^-4	0.876	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2	TF binding site mE1_TFBS_sens
2R	16805938	2R_16805938_SNP [dm3] 2R_20918433_SNP [dm6]	C	T	1.477e^-4	0.876	INTRON Rx	TF binding site mE1_TFBS_chinmo
2R	8871384	2R_8871384_SNP [dm3] 2R_12983879_SNP [dm6]	C	T	1.478e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21334650	3R_21334650_SNP [dm3] 3R_25508928_SNP [dm6]	A	G	1.478e^-4	0.876	DOWNSTREAM CG5111 INTERGENIC
3L	12547431	3L_12547431_SNP [dm3] 3L_12554331_SNP [dm6]	T	C	1.481e^-4	0.876	INTRON sowah
X	14562150	X_14562150_SNP [dm3] X_14668117_SNP [dm6]	T	A	1.483e^-4	0.876	INTERGENIC
3R	17146902	3R_17146902_SNP [dm3] 3R_21321180_SNP [dm6]	A	T	1.498e^-4	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
2L	6128346	2L_6128346_SNP [dm3] 2L_6128346_SNP [dm6]	G	A	1.498e^-4	0.876	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9523616	2L_9523616_SNP [dm3] 2L_9523616_SNP [dm6]	G	A	1.502e^-4	0.876	INTRON Oatp30B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18355969	3R_18355969_SNP [dm3] 3R_22530247_SNP [dm6]	A	T	1.502e^-4	0.876	DOWNSTREAM CG33093 INTRON CG33099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13976517	3L_13976517_SNP [dm3] 3L_13983417_SNP [dm6]	A	C	1.504e^-4	0.876	INTRON CG17364
3R	21731057	3R_21731057_SNP [dm3] 3R_25905335_SNP [dm6]	C	T	1.508e^-4	0.876	DOWNSTREAM CR43259 INTRON CR43259
3R	9279969	3R_9279969_SNP [dm3] 3R_13454247_SNP [dm6]	G	A	1.517e^-4	0.876	INTRON CG14372
2R	6719985	2R_6719985_SNP [dm3] 2R_10832480_SNP [dm6]	C	A	1.530e^-4	0.876	INTRON CG12344
2R	6148249	2R_6148249_SNP [dm3] 2R_10260744_SNP [dm6]	T	C	1.533e^-4	0.876	DOWNSTREAM CR30009 INTRON CG12911
3L	4965536	3L_4965536_SNP [dm3] 3L_4965536_SNP [dm6]	A	G	1.542e^-4	0.876	INTRON Con
2R	12766071	2R_12766071_SNP [dm3] 2R_16878566_SNP [dm6]	A	C	1.543e^-4	0.876	INTRON CG8910
X	2405311	X_2405311_SNP [dm3] X_2511278_SNP [dm6]	G	C	1.544e^-4	0.876	INTRON trol	TF binding site mE1_TFBS_inv
2L	2085858	2L_2085858_SNP [dm3] 2L_2085858_SNP [dm6]	T	A	1.547e^-4	0.876	INTRON dpr3
3L	822876	3L_822876_SNP [dm3] 3L_822876_SNP [dm6]	A	C	1.551e^-4	0.876	INTERGENIC
2L	9773054	2L_9773054_SNP [dm3] 2L_9773054_SNP [dm6]	G	A	1.553e^-4	0.876	UPSTREAM ppk16 DOWNSTREAM ppk11 INTERGENIC
X	6651306	X_6651306_SNP [dm3] X_6757273_SNP [dm6]	G	A	1.557e^-4	0.876	INTRON CG14438	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18869552	2L_18869552_SNP [dm3] 2L_18869552_SNP [dm6]	C	T	1.564e^-4	0.876	INTRON tup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10989681	3L_10989681_INS [dm3] 3L_10996581_INS [dm6]	A	AA	1.572e^-4	0.876	INTRON klu
2L	1190362	2L_1190362_SNP [dm3] 2L_1190362_SNP [dm6]	C	G	1.577e^-4	0.876	INTRON CG5001
3R	23526984	3R_23526984_SNP [dm3] 3R_27701262_SNP [dm6]	A	G	1.582e^-4	0.876	SYNONYMOUS_CODING btz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7587475	2L_7587475_SNP [dm3] 2L_7587475_SNP [dm6]	A	C	1.583e^-4	0.876	INTERGENIC
2L	2809658	2L_2809658_SNP [dm3] 2L_2809658_SNP [dm6]	T	C	1.596e^-4	0.876	SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8199223	3L_8199223_SNP [dm3] 3L_8206123_SNP [dm6]	A	T	1.606e^-4	0.876	INTERGENIC
2L	4867155	2L_4867155_SNP [dm3] 2L_4867155_SNP [dm6]	G	C	1.611e^-4	0.876	INTRON pog
2R	12759579	2R_12759579_SNP [dm3] 2R_16872074_SNP [dm6]	G	A	1.615e^-4	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8690511	3L_8690511_SNP [dm3] 3L_8697411_SNP [dm6]	T	C	1.616e^-4	0.876	INTERGENIC
X	18872380	X_18872380_SNP [dm3] X_18978347_SNP [dm6]	T	A	1.617e^-4	0.876	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
X	11861316	X_11861316_SNP [dm3] X_11967283_SNP [dm6]	A	G	1.630e^-4	0.876	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27696209	3R_27696209_SNP [dm3] 3R_31870487_SNP [dm6]	A	G	1.643e^-4	0.876	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9328584	3L_9328584_SNP [dm3] 3L_9335484_SNP [dm6]	G	A	1.647e^-4	0.876	UPSTREAM PGRP-LA INTRON PGRP-LA
2R	14551488	2R_14551488_SNP [dm3] 2R_18663983_SNP [dm6]	T	A	1.649e^-4	0.876	DOWNSTREAM CG33136 INTERGENIC
X	18872393	X_18872393_SNP [dm3] X_18978360_SNP [dm6]	C	A	1.651e^-4	0.876	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3R	25201988	3R_25201988_SNP [dm3] 3R_29376266_SNP [dm6]	T	A	1.664e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17142887	3R_17142887_SNP [dm3] 3R_21317165_SNP [dm6]	C	T	1.674e^-4	0.876	DOWNSTREAM mir-4951 EXON Hsromega
2R	8342201	2R_8342201_INS [dm3] 2R_12454696_INS [dm6]	T	TCCATATTAT	1.674e^-4	0.876	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5523671	3L_5523671_SNP [dm3] 3L_5530571_SNP [dm6]	C	T	1.675e^-4	0.876	INTERGENIC
3L	12851301	3L_12851301_SNP [dm3] 3L_12858201_SNP [dm6]	G	A	1.682e^-4	0.876	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
2R	14648304	2R_14648304_SNP [dm3] 2R_18760799_SNP [dm6]	A	C	1.699e^-4	0.876	UPSTREAM Jabba & 1 other INTRON Jabba
3L	9312447	3L_9312447_INS [dm3] 3L_9319347_INS [dm6]	G	GTATGAAATACGCG...	1.700e^-4	0.876	INTERGENIC
2R	12759587	2R_12759587_SNP [dm3] 2R_16872082_SNP [dm6]	G	A	1.707e^-4	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3641517	X_3641517_SNP [dm3] X_3747484_SNP [dm6]	C	T	1.709e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19012665	3R_19012665_SNP [dm3] 3R_23186943_SNP [dm6]	T	A	1.724e^-4	0.876	UTR_3_PRIME cnc
3L	12557041	3L_12557041_SNP [dm3] 3L_12563941_SNP [dm6]	G	T	1.726e^-4	0.876	INTRON sowah
3L	8874448	3L_8874448_SNP [dm3] 3L_8881348_SNP [dm6]	T	A	1.738e^-4	0.876	INTRON dally
2L	11207600	2L_11207600_SNP [dm3] 2L_11207600_SNP [dm6]	C	G	1.745e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7542968	2R_7542968_SNP [dm3] 2R_11655463_SNP [dm6]	T	A	1.746e^-4	0.876	INTRON Roc2 & 1 other
X	15662613	X_15662613_SNP [dm3] X_15768580_SNP [dm6]	T	C	1.751e^-4	0.876	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
X	17174385	X_17174385_SNP [dm3] X_17280352_SNP [dm6]	A	C	1.753e^-4	0.876	SYNONYMOUS_CODING f DOWNSTREAM CG8664
X	17282002	X_17282002_SNP [dm3] X_17387969_SNP [dm6]	G	A	1.759e^-4	0.876	INTERGENIC
2R	3749029	2R_3749029_SNP [dm3] 2R_7861524_SNP [dm6]	T	A	1.768e^-4	0.876	INTRON Dgk
2R	17345291	2R_17345291_DEL [dm3] 2R_21457786_DEL [dm6]	AGA	A	1.782e^-4	0.876	INTRON Sdc
3R	19885109	3R_19885109_SNP [dm3] 3R_24059387_SNP [dm6]	T	A	1.783e^-4	0.876	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3R	19644445	3R_19644445_SNP [dm3] 3R_23818723_SNP [dm6]	A	T	1.783e^-4	0.876	UTR_5_PRIME CG33111 UPSTREAM eIF4G2 INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9507130	X_9507130_SNP [dm3] X_9613097_SNP [dm6]	T	A	1.794e^-4	0.876	INTRON CG42797
3L	2584105	3L_2584105_SNP [dm3] 3L_2584105_SNP [dm6]	C	A	1.795e^-4	0.876	INTRON msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6141806	2R_6141806_SNP [dm3] 2R_10254301_SNP [dm6]	A	T	1.796e^-4	0.876	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15073045	3R_15073045_SNP [dm3] 3R_19247323_SNP [dm6]	G	T	1.799e^-4	0.876	SYNONYMOUS_CODING CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23240969	3R_23240969_DEL [dm3] 3R_27415247_DEL [dm6]	TT	T	1.807e^-4	0.876	INTRON side	TF binding site BDTNP1_TFBS_twi
2R	11159874	2R_11159874_SNP [dm3] 2R_15272369_SNP [dm6]	G	A	1.812e^-4	0.876	INTRON Trpm
3R	9220170	3R_9220170_SNP [dm3] 3R_13394448_SNP [dm6]	T	G	1.815e^-4	0.876	INTRON CCHa2
X	12139251	X_12139251_SNP [dm3] X_12245218_SNP [dm6]	C	T	1.815e^-4	0.876	INTRON Ten-a
3L	15165055	3L_15165055_SNP [dm3] 3L_15171955_SNP [dm6]	C	G	1.816e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3634356	X_3634356_SNP [dm3] X_3740323_SNP [dm6]	A	G	1.828e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	16993140	3R_16993140_SNP [dm3] 3R_21167418_SNP [dm6]	T	A	1.829e^-4	0.876	INTRON SNF4Agamma & 1 other
3L	16705073	3L_16705073_SNP [dm3] 3L_16711973_SNP [dm6]	C	A	1.831e^-4	0.876	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19364938	3R_19364938_SNP [dm3] 3R_23539216_SNP [dm6]	T	G	1.833e^-4	0.876	UPSTREAM CG10168 INTERGENIC
3R	17142089	3R_17142089_SNP [dm3] 3R_21316367_SNP [dm6]	A	T	1.840e^-4	0.876	UPSTREAM mir-4951 EXON Hsromega
3L	1109394	3L_1109394_SNP [dm3] 3L_1109394_SNP [dm6]	G	T	1.842e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	1.843e^-4	0.876	DOWNSTREAM Mks1 INTERGENIC
2L	17563733	2L_17563733_SNP [dm3] 2L_17563733_SNP [dm6]	A	T	1.845e^-4	0.876	INTERGENIC
2L	20564796	2L_20564796_SNP [dm3] 2L_20564796_SNP [dm6]	A	C	1.847e^-4	0.876	INTRON CR45347
2L	7631225	2L_7631225_SNP [dm3] 2L_7631225_SNP [dm6]	A	T	1.868e^-4	0.876	INTERGENIC
2L	14001479	2L_14001479_SNP [dm3] 2L_14001479_SNP [dm6]	A	T	1.869e^-4	0.876	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10521241	3L_10521241_SNP [dm3] 3L_10528141_SNP [dm6]	T	A	1.872e^-4	0.876	INTRON A2bp1
3R	19477594	3R_19477594_SNP [dm3] 3R_23651872_SNP [dm6]	A	G	1.881e^-4	0.876	INTRON CG31145
3L	3197718	3L_3197718_SNP [dm3] 3L_3197718_SNP [dm6]	T	C	1.881e^-4	0.876	UPSTREAM CG14966 DOWNSTREAM CG32276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	8898216	X_8898216_SNP [dm3] X_9004183_SNP [dm6]	G	A	1.884e^-4	0.876	INTRON rdgA & 1 other
2L	14624593	2L_14624593_DEL [dm3] 2L_14624593_DEL [dm6]	TAGG	T	1.886e^-4	0.876	INTRON osp
3R	21342461	3R_21342461_SNP [dm3] 3R_25516739_SNP [dm6]	C	G	1.890e^-4	0.876	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8536341	2R_8536341_SNP [dm3] 2R_12648836_SNP [dm6]	C	T	1.891e^-4	0.876	UPSTREAM CG8785 INTERGENIC
3L	1107758	3L_1107758_INS [dm3] 3L_1107758_INS [dm6]	C	CT	1.892e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19649746	3R_19649746_SNP [dm3] 3R_23824024_SNP [dm6]	T	C	1.892e^-4	0.876	INTRON CG34355
3L	2945640	3L_2945640_DEL [dm3] 3L_2945640_DEL [dm6]	CA	C	1.897e^-4	0.876	UTR_3_PRIME Shab INTRON Shab
3L	3101581	3L_3101581_DEL [dm3] 3L_3101581_DEL [dm6]	GCC	T	1.907e^-4	0.876	INTRON Cht7
3R	18403526	3R_18403526_SNP [dm3] 3R_22577804_SNP [dm6]	A	G	1.907e^-4	0.876	INTRON CG33110
X	11861396	X_11861396_SNP [dm3] X_11967363_SNP [dm6]	G	A	1.914e^-4	0.876	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21380044	3L_21380044_SNP [dm3] 3L_21386944_SNP [dm6]	G	C	1.914e^-4	0.876	INTRON rgn
2L	6705444	2L_6705444_SNP [dm3] 2L_6705444_SNP [dm6]	T	A	1.915e^-4	0.876	INTRON Tsp
2R	14648200	2R_14648200_SNP [dm3] 2R_18760695_SNP [dm6]	A	G	1.915e^-4	0.876	UPSTREAM Jabba INTRON Jabba
3L	11542481	3L_11542481_SNP [dm3] 3L_11549381_SNP [dm6]	G	A	1.918e^-4	0.876	INTRON Mob2
2L	13477235	2L_13477235_SNP [dm3] 2L_13477235_SNP [dm6]	G	T	1.920e^-4	0.876	INTRON CG42784
X	3635269	X_3635269_SNP [dm3] X_3741236_SNP [dm6]	A	C	1.923e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1620084	2L_1620084_SNP [dm3] 2L_1620084_SNP [dm6]	T	C	1.927e^-4	0.876	EXON CR44603
2R	11249339	2R_11249339_SNP [dm3] 2R_15361834_SNP [dm6]	G	T	1.930e^-4	0.876	INTRON unc-5	TF binding site mE1_TFBS_chinmo
3L	4179046	3L_4179046_SNP [dm3] 3L_4179046_SNP [dm6]	C	T	1.943e^-4	0.876	UTR_3_PRIME Teh2 UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
3R	21731248	3R_21731248_SNP [dm3] 3R_25905526_SNP [dm6]	G	T	1.952e^-4	0.876	DOWNSTREAM CR43259 INTRON CR43259
X	9039667	X_9039667_SNP [dm3] X_9145634_SNP [dm6]	C	G	1.967e^-4	0.876	INTRON CG7065
3L	4178965	3L_4178965_SNP [dm3] 3L_4178965_SNP [dm6]	T	A	1.971e^-4	0.876	UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
2L	5591647	2L_5591647_SNP [dm3] 2L_5591647_SNP [dm6]	G	A	1.975e^-4	0.876	INTERGENIC
2L	19915638	2L_19915638_SNP [dm3] 2L_19915638_SNP [dm6]	G	A	1.984e^-4	0.876	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17290732	2L_17290732_SNP [dm3] 2L_17290732_SNP [dm6]	A	G	1.985e^-4	0.876	DOWNSTREAM CG6380 INTERGENIC
2R	8436079	2R_8436079_SNP [dm3] 2R_12548574_SNP [dm6]	C	G	1.987e^-4	0.876	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11265558	3L_11265558_SNP [dm3] 3L_11272458_SNP [dm6]	C	A	1.995e^-4	0.876	INTERGENIC
2R	12759557	2R_12759557_SNP [dm3] 2R_16872052_SNP [dm6]	A	T	2.004e^-4	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5970001	X_5970001_SNP [dm3] X_6075968_SNP [dm6]	C	T	2.005e^-4	0.876	DOWNSTREAM CG4666 INTERGENIC
3L	9327833	3L_9327833_SNP [dm3] 3L_9334733_SNP [dm6]	C	G	2.019e^-4	0.876	NON_SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
2L	12445808	2L_12445808_SNP [dm3] 2L_12445808_SNP [dm6]	G	A	2.022e^-4	0.876	START_GAINED Oatp33Ea UTR_5_PRIME Oatp33Ea DOWNSTREAM CG5421	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	27856698	3R_27856698_INS [dm3] 3R_32030976_INS [dm6]	A	AA	2.028e^-4	0.876	INTERGENIC
3R	9310383	3R_9310383_SNP [dm3] 3R_13484661_SNP [dm6]	G	A	2.030e^-4	0.876	INTERGENIC
3R	9197015	3R_9197015_SNP [dm3] 3R_13371293_SNP [dm6]	A	G	2.031e^-4	0.876	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
X	2708996	X_2708996_SNP [dm3] X_2814963_SNP [dm6]	A	T	2.031e^-4	0.876	INTRON kirre
2L	11207414	2L_11207414_SNP [dm3] 2L_11207414_SNP [dm6]	C	T	2.035e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19886318	3R_19886318_SNP [dm3] 3R_24060596_SNP [dm6]	T	C	2.036e^-4	0.876	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
2L	19921155	2L_19921155_SNP [dm3] 2L_19921155_SNP [dm6]	T	C	2.038e^-4	0.876	INTRON sick EXON CR43828
3L	5520923	3L_5520923_SNP [dm3] 3L_5527823_SNP [dm6]	G	C	2.040e^-4	0.876	INTRON Lkr
3L	15221991	3L_15221991_INS [dm3] 3L_15228891_INS [dm6]	T	TT	2.042e^-4	0.876	INTERGENIC
2L	7563813	2L_7563813_SNP [dm3] 2L_7563813_SNP [dm6]	G	T	2.046e^-4	0.876	INTRON RapGAP1
2R	12759531	2R_12759531_SNP [dm3] 2R_16872026_SNP [dm6]	A	T	2.049e^-4	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21731190	3R_21731190_SNP [dm3] 3R_25905468_SNP [dm6]	C	A	2.051e^-4	0.876	DOWNSTREAM CR43259 INTRON CR43259
3R	9297045	3R_9297045_SNP [dm3] 3R_13471323_SNP [dm6]	A	C	2.054e^-4	0.876	INTERGENIC
X	3642654	X_3642654_SNP [dm3] X_3748621_SNP [dm6]	T	C	2.057e^-4	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3643494	X_3643494_SNP [dm3] X_3749461_SNP [dm6]	G	A	2.057e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14137220	2R_14137220_SNP [dm3] 2R_18249715_SNP [dm6]	C	T	2.065e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1749020	2R_1749020_DEL [dm3] 2R_5861515_DEL [dm6]	GCGCG	G	2.076e^-4	0.876	DOWNSTREAM dpr12 INTERGENIC
2L	3602932	2L_3602932_SNP [dm3] 2L_3602932_SNP [dm6]	A	G	2.081e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	3229215	X_3229215_SNP [dm3] X_3335182_SNP [dm6]	G	T	2.085e^-4	0.876	INTRON CR44886 & 1 other
2R	4964039	2R_4964039_SNP [dm3] 2R_9076534_SNP [dm6]	C	G	2.086e^-4	0.876	NON_SYNONYMOUS_CODING ana
2L	10026902	2L_10026902_SNP [dm3] 2L_10026902_SNP [dm6]	G	A	2.092e^-4	0.876	SYNONYMOUS_CODING CG13127
3R	17142082	3R_17142082_SNP [dm3] 3R_21316360_SNP [dm6]	T	A	2.100e^-4	0.876	UPSTREAM mir-4951 EXON Hsromega
2R	14551541	2R_14551541_SNP [dm3] 2R_18664036_SNP [dm6]	C	T	2.101e^-4	0.876	DOWNSTREAM CG33136 INTERGENIC
2R	14551593	2R_14551593_SNP [dm3] 2R_18664088_SNP [dm6]	G	C	2.101e^-4	0.876	DOWNSTREAM CG33136 INTERGENIC
2R	18461103	2R_18461103_SNP [dm3] 2R_22573598_SNP [dm6]	C	T	2.102e^-4	0.876	INTRON dnr1
X	8902808	X_8902808_DEL [dm3] X_9008775_DEL [dm6]	GATGGCG	G	2.104e^-4	0.876	INTRON rdgA & 1 other
2L	1748915	2L_1748915_SNP [dm3] 2L_1748915_SNP [dm6]	C	T	2.107e^-4	0.876	INTRON CG17646
X	14562134	X_14562134_SNP [dm3] X_14668101_SNP [dm6]	C	A	2.132e^-4	0.876	INTERGENIC
3R	9880952	3R_9880952_SNP [dm3] 3R_14055230_SNP [dm6]	T	C	2.134e^-4	0.876	INTERGENIC
2R	13932555	2R_13932555_SNP [dm3] 2R_18045050_SNP [dm6]	G	A	2.135e^-4	0.876	UTR_5_PRIME CG5770
X	9039685	X_9039685_SNP [dm3] X_9145652_SNP [dm6]	A	T	2.138e^-4	0.876	INTRON CG7065
3R	23370302	3R_23370302_SNP [dm3] 3R_27544580_SNP [dm6]	G	T	2.160e^-4	0.876	NON_SYNONYMOUS_CODING Gr98c DOWNSTREAM Gr98b
3R	17141866	3R_17141866_SNP [dm3] 3R_21316144_SNP [dm6]	C	A	2.161e^-4	0.876	UPSTREAM mir-4951 EXON Hsromega
3L	16352076	3L_16352076_DEL [dm3] 3L_16358976_DEL [dm6]	GG	G	2.165e^-4	0.876	INTRON CG45057	TF binding site BDTNP1_TFBS_z
3L	12894101	3L_12894101_SNP [dm3] 3L_12901001_SNP [dm6]	T	A	2.167e^-4	0.876	DOWNSTREAM CG12520 INTERGENIC
3R	21624581	3R_21624581_SNP [dm3] 3R_25798859_SNP [dm6]	G	A	2.167e^-4	0.876	INTERGENIC
3R	9172181	3R_9172181_SNP [dm3] 3R_13346459_SNP [dm6]	T	C	2.174e^-4	0.876	INTERGENIC
2R	4709745	2R_4709745_SNP [dm3] 2R_8822240_SNP [dm6]	G	A	2.179e^-4	0.876	INTRON sns	TF binding site mE1_TFBS_chinmo
X	18814108	X_18814108_SNP [dm3] X_18920075_SNP [dm6]	A	C	2.184e^-4	0.876	INTERGENIC
2L	15328179	2L_15328179_SNP [dm3] 2L_15328179_SNP [dm6]	T	G	2.186e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	15392368	2R_15392368_SNP [dm3] 2R_19504863_SNP [dm6]	A	G	2.188e^-4	0.876	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl
3L	3783162	3L_3783162_SNP [dm3] 3L_3783162_SNP [dm6]	C	A	2.189e^-4	0.876	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	5278030	3R_5278030_DEL [dm3] 3R_9452308_DEL [dm6]	AAAAA	A	2.191e^-4	0.876	UTR_3_PRIME ps
2R	11422965	2R_11422965_SNP [dm3] 2R_15535460_SNP [dm6]	G	A	2.193e^-4	0.876	NON_SYNONYMOUS_CODING CG30471
3R	22453306	3R_22453306_SNP [dm3] 3R_26627584_SNP [dm6]	G	T	2.196e^-4	0.876	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
2R	9099950	2R_9099950_SNP [dm3] 2R_13212445_SNP [dm6]	G	A	2.206e^-4	0.876	UTR_3_PRIME AQP UPSTREAM CG30058 & 2 others
2L	9153220	2L_9153220_SNP [dm3] 2L_9153220_SNP [dm6]	T	A	2.216e^-4	0.876	INTRON CG32982
3R	19883648	3R_19883648_SNP [dm3] 3R_24057926_SNP [dm6]	A	C	2.217e^-4	0.876	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	17143959	3R_17143959_SNP [dm3] 3R_21318237_SNP [dm6]	G	T	2.228e^-4	0.876	DOWNSTREAM CG16791 & 1 other INTERGENIC
2L	19594232	2L_19594232_SNP [dm3] 2L_19594232_SNP [dm6]	G	T	2.232e^-4	0.876	INTRON Lar
2R	13086791	2R_13086791_SNP [dm3] 2R_17199286_SNP [dm6]	G	T	2.244e^-4	0.876	INTERGENIC
X	14562152	X_14562152_SNP [dm3] X_14668119_SNP [dm6]	T	C	2.246e^-4	0.876	INTERGENIC
2L	20694560	2L_20694560_SNP [dm3] 2L_20694560_SNP [dm6]	C	A	2.249e^-4	0.876	INTRON Hr38
2R	17076124	2R_17076124_INS [dm3] 2R_21188619_INS [dm6]	T	TTT	2.250e^-4	0.876	INTRON tud
2R	12759564	2R_12759564_SNP [dm3] 2R_16872059_SNP [dm6]	C	A	2.250e^-4	0.876	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9472135	3R_9472135_SNP [dm3] 3R_13646413_SNP [dm6]	C	T	2.254e^-4	0.876	UPSTREAM rin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12557213	3L_12557213_SNP [dm3] 3L_12564113_SNP [dm6]	C	G	2.255e^-4	0.876	INTRON sowah
2R	6719969	2R_6719969_SNP [dm3] 2R_10832464_SNP [dm6]	T	A	2.256e^-4	0.876	INTRON CG12344
2L	11207383	2L_11207383_SNP [dm3] 2L_11207383_SNP [dm6]	A	C	2.261e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12763957	2R_12763957_SNP [dm3] 2R_16876452_SNP [dm6]	G	T	2.261e^-4	0.876	INTRON CG8910
X	14562051	X_14562051_SNP [dm3] X_14668018_SNP [dm6]	T	A	2.261e^-4	0.876	INTERGENIC
3L	5813556	3L_5813556_SNP [dm3] 3L_5820456_SNP [dm6]	C	T	2.268e^-4	0.876	INTRON vn
3L	15190257	3L_15190257_SNP [dm3] 3L_15197157_SNP [dm6]	A	T	2.273e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19152335	2R_19152335_SNP [dm3] 2R_23264812_SNP [dm6]	A	C	2.281e^-4	0.876	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3R	26684507	3R_26684507_SNP [dm3] 3R_30858785_SNP [dm6]	A	T	2.283e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3498959	3L_3498959_INS [dm3] 3L_3498959_INS [dm6]	AA	GCTT	2.286e^-4	0.876	INTRON CG42324
3R	6346660	3R_6346660_SNP [dm3] 3R_10520938_SNP [dm6]	T	A	2.293e^-4	0.876	INTRON hth
3R	19047633	3R_19047633_SNP [dm3] 3R_23221911_SNP [dm6]	C	T	2.297e^-4	0.876	UTR_5_PRIME cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15069164	3R_15069164_SNP [dm3] 3R_19243442_SNP [dm6]	G	A	2.308e^-4	0.876	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11207380	2L_11207380_INS [dm3] 2L_11207380_INS [dm6]	C	CAT	2.317e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8994500	2R_8994500_SNP [dm3] 2R_13106995_SNP [dm6]	T	C	2.317e^-4	0.876	INTERGENIC
3R	21731187	3R_21731187_SNP [dm3] 3R_25905465_SNP [dm6]	T	C	2.323e^-4	0.876	DOWNSTREAM CR43259 INTRON CR43259
2R	14557548	2R_14557548_SNP [dm3] 2R_18670043_SNP [dm6]	C	G	2.323e^-4	0.876	INTRON edl	TF binding site mE1_TFBS_sens
3L	5548805	3L_5548805_SNP [dm3] 3L_5555705_SNP [dm6]	G	T	2.331e^-4	0.876	INTERGENIC
X	9159501	X_9159501_SNP [dm3] X_9265468_SNP [dm6]	A	G	2.341e^-4	0.876	SPLICE_SITE_REGION Erk7 INTRON Erk7
3L	6683459	3L_6683459_SNP [dm3] 3L_6690359_SNP [dm6]	T	G	2.343e^-4	0.876	INTRON SP1173
2L	20761384	2L_20761384_SNP [dm3] 2L_20761384_SNP [dm6]	T	C	2.343e^-4	0.876	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22530845	3R_22530845_SNP [dm3] 3R_26705123_SNP [dm6]	A	C	2.348e^-4	0.876	INTRON amon
3R	26753715	3R_26753715_SNP [dm3] 3R_30927993_SNP [dm6]	C	A	2.349e^-4	0.876	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	27698920	3R_27698920_SNP [dm3] 3R_31873198_SNP [dm6]	G	C	2.356e^-4	0.876	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6643090	X_6643090_INS [dm3] X_6749057_INS [dm6]	A	ACA	2.365e^-4	0.876	INTRON CG14439
3R	19885091	3R_19885091_SNP [dm3] 3R_24059369_SNP [dm6]	A	G	2.369e^-4	0.876	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3R	17142092	3R_17142092_SNP [dm3] 3R_21316370_SNP [dm6]	A	T	2.382e^-4	0.876	UPSTREAM mir-4951 EXON Hsromega
2L	3084458	2L_3084458_SNP [dm3] 2L_3084458_SNP [dm6]	A	T	2.391e^-4	0.876	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17911928	3R_17911928_SNP [dm3] 3R_22086206_SNP [dm6]	G	A	2.391e^-4	0.876	UPSTREAM CG5791 INTRON CG5778
3R	26944676	3R_26944676_SNP [dm3] 3R_31118954_SNP [dm6]	A	G	2.392e^-4	0.876	INTERGENIC
2L	20963563	2L_20963563_DEL [dm3] 2L_20963563_DEL [dm6]	TGTTGCTTCGTAGCT...	T	2.398e^-4	0.876	INTERGENIC
2L	11925974	2L_11925974_SNP [dm3] 2L_11925974_SNP [dm6]	A	C	2.403e^-4	0.876	INTRON Pde1c
3L	6088695	3L_6088695_SNP [dm3] 3L_6095595_SNP [dm6]	A	T	2.422e^-4	0.876	UPSTREAM CG10467 INTRON loj
2L	10435744	2L_10435744_SNP [dm3] 2L_10435744_SNP [dm6]	C	G	2.424e^-4	0.876	UPSTREAM holn1 & 1 other INTERGENIC
3L	3193798	3L_3193798_SNP [dm3] 3L_3193798_SNP [dm6]	G	T	2.432e^-4	0.876	INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13185600	3L_13185600_SNP [dm3] 3L_13192500_SNP [dm6]	G	T	2.434e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
X	14562148	X_14562148_SNP [dm3] X_14668115_SNP [dm6]	T	A	2.437e^-4	0.876	INTERGENIC
2R	19157282	2R_19157282_SNP [dm3] 2R_23269759_SNP [dm6]	T	C	2.444e^-4	0.876	UPSTREAM CG13540 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16749911	X_16749911_SNP [dm3] X_16855878_SNP [dm6]	C	A	2.446e^-4	0.876	INTRON CG13003
2R	14551485	2R_14551485_SNP [dm3] 2R_18663980_SNP [dm6]	C	T	2.447e^-4	0.876	DOWNSTREAM CG33136 INTERGENIC
2R	11982578	2R_11982578_SNP [dm3] 2R_16095073_SNP [dm6]	A	T	2.452e^-4	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	11842053	X_11842053_SNP [dm3] X_11948020_SNP [dm6]	T	A	2.464e^-4	0.876	INTRON cac
2R	17299305	2R_17299305_SNP [dm3] 2R_21411800_SNP [dm6]	C	A	2.471e^-4	0.876	INTRON Sdc	TF binding site mE1_TFBS_inv
2L	16007575	2L_16007575_SNP [dm3] 2L_16007575_SNP [dm6]	C	T	2.473e^-4	0.876	DOWNSTREAM CR44844 INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7319307	X_7319307_SNP [dm3] X_7425274_SNP [dm6]	A	G	2.479e^-4	0.876	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
X	12430055	X_12430055_SNP [dm3] X_12536022_SNP [dm6]	G	T	2.482e^-4	0.876	INTRON CG43921
2R	15078314	2R_15078314_SNP [dm3] 2R_19190809_SNP [dm6]	G	A	2.486e^-4	0.876	INTRON hppy
3R	23814651	3R_23814651_SNP [dm3] 3R_27988929_SNP [dm6]	C	G	2.489e^-4	0.876	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11985426	2R_11985426_SNP [dm3] 2R_16097921_SNP [dm6]	C	A	2.491e^-4	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15593622	2R_15593622_SNP [dm3] 2R_19706117_SNP [dm6]	C	A	2.491e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs
2R	12765950	2R_12765950_SNP [dm3] 2R_16878445_SNP [dm6]	G	C	2.501e^-4	0.876	INTRON CG8910
3L	3386055	3L_3386055_SNP [dm3] 3L_3386055_SNP [dm6]	C	T	2.502e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27697847	3R_27697847_SNP [dm3] 3R_31872125_SNP [dm6]	T	C	2.507e^-4	0.876	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8720039	2R_8720039_SNP [dm3] 2R_12832534_SNP [dm6]	A	C	2.510e^-4	0.876	INTERGENIC
3L	3101552	3L_3101552_SNP [dm3] 3L_3101552_SNP [dm6]	T	G	2.518e^-4	0.876	INTRON Cht7
3L	9253899	3L_9253899_SNP [dm3] 3L_9260799_SNP [dm6]	A	T	2.520e^-4	0.876	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	13099243	X_13099243_SNP [dm3] X_13205210_SNP [dm6]	G	A	2.522e^-4	0.876	INTRON sno
2R	12764008	2R_12764008_SNP [dm3] 2R_16876503_SNP [dm6]	A	C	2.526e^-4	0.876	SPLICE_SITE_REGION CG8910 INTRON CG8910
2L	20751119	2L_20751119_SNP [dm3] 2L_20751119_SNP [dm6]	G	A	2.526e^-4	0.876	SYNONYMOUS_CODING CG9319 DOWNSTREAM Fs_2_Ket	TF binding site mE1_TFBS_sens
X	13099244	X_13099244_SNP [dm3] X_13205211_SNP [dm6]	A	T	2.530e^-4	0.876	INTRON sno
3R	19649876	3R_19649876_SNP [dm3] 3R_23824154_SNP [dm6]	G	A	2.530e^-4	0.876	INTRON CG34355
2R	4540052	2R_4540052_SNP [dm3] 2R_8652547_SNP [dm6]	G	A	2.543e^-4	0.876	INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	14624599	2L_14624599_DEL [dm3] 2L_14624599_DEL [dm6]	TAAAAAA	T	2.552e^-4	0.876	INTRON osp
3R	22486363	3R_22486363_SNP [dm3] 3R_26660641_SNP [dm6]	G	A	2.563e^-4	0.876	INTRON beat-VII
3L	8302330	3L_8302330_SNP [dm3] 3L_8309230_SNP [dm6]	G	A	2.566e^-4	0.876	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7166284	2L_7166284_SNP [dm3] 2L_7166284_SNP [dm6]	A	C	2.572e^-4	0.876	INTERGENIC
2L	7529610	2L_7529610_SNP [dm3] 2L_7529610_SNP [dm6]	A	G	2.575e^-4	0.876	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	12041048	2L_12041048_SNP [dm3] 2L_12041048_SNP [dm6]	C	A	2.575e^-4	0.876	UPSTREAM CG6766 DOWNSTREAM CG6785 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11604752	2R_11604752_SNP [dm3] 2R_15717247_SNP [dm6]	G	A	2.576e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13094660	X_13094660_SNP [dm3] X_13200627_SNP [dm6]	C	T	2.580e^-4	0.876	SYNONYMOUS_CODING sno DOWNSTREAM CG44437	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3498955	3L_3498955_SNP [dm3] 3L_3498955_SNP [dm6]	C	A	2.594e^-4	0.876	INTRON CG42324
X	16020366	X_16020366_SNP [dm3] X_16126333_SNP [dm6]	G	A	2.595e^-4	0.876	INTRON disco-r
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	2.596e^-4	0.876	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
2R	16281797	2R_16281797_SNP [dm3] 2R_20394292_SNP [dm6]	T	C	2.601e^-4	0.876	INTERGENIC
3L	1310473	3L_1310473_SNP [dm3] 3L_1310473_SNP [dm6]	T	G	2.602e^-4	0.876	INTRON CG2469	TF binding site mE1_TFBS_cad
3L	16704921	3L_16704921_SNP [dm3] 3L_16711821_SNP [dm6]	A	G	2.603e^-4	0.876	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3762321	3L_3762321_SNP [dm3] 3L_3762321_SNP [dm6]	T	A	2.609e^-4	0.876	INTRON CG32264
2R	12765557	2R_12765557_SNP [dm3] 2R_16878052_SNP [dm6]	T	G	2.609e^-4	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad
2L	9163830	2L_9163830_SNP [dm3] 2L_9163830_SNP [dm6]	A	T	2.624e^-4	0.876	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC
2L	9598895	2L_9598895_SNP [dm3] 2L_9598895_SNP [dm6]	G	T	2.628e^-4	0.876	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5198265	2L_5198265_SNP [dm3] 2L_5198265_SNP [dm6]	C	T	2.635e^-4	0.876	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18162644	2R_18162644_SNP [dm3] 2R_22275139_SNP [dm6]	T	C	2.638e^-4	0.876	INTRON dve	TF binding site mE1_TFBS_inv
2L	12729449	2L_12729449_SNP [dm3] 2L_12729449_SNP [dm6]	T	A	2.652e^-4	0.876	INTRON MRP
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	2.652e^-4	0.876	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	6451792	3R_6451792_SNP [dm3] 3R_10626070_SNP [dm6]	G	T	2.660e^-4	0.876	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6719782	2R_6719782_SNP [dm3] 2R_10832277_SNP [dm6]	T	C	2.669e^-4	0.876	INTRON CG12344	TF binding site mE1_TFBS_inv
3L	12547439	3L_12547439_SNP [dm3] 3L_12554339_SNP [dm6]	C	A	2.670e^-4	0.876	INTRON sowah
3R	22534739	3R_22534739_SNP [dm3] 3R_26709017_SNP [dm6]	G	A	2.676e^-4	0.876	INTRON amon
3R	15016653	3R_15016653_SNP [dm3] 3R_19190931_SNP [dm6]	C	A	2.676e^-4	0.876	INTRON CG31475
3L	3498953	3L_3498953_INS [dm3] 3L_3498953_INS [dm6]	G	TT	2.681e^-4	0.876	INTRON CG42324
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	2.692e^-4	0.876	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	19420212	2L_19420212_SNP [dm3] 2L_19420212_SNP [dm6]	T	A	2.694e^-4	0.876	DOWNSTREAM lectin-37Db INTRON Pax
3R	18678779	3R_18678779_SNP [dm3] 3R_22853057_SNP [dm6]	C	G	2.696e^-4	0.876	INTERGENIC
2L	15372579	2L_15372579_SNP [dm3] 2L_15372579_SNP [dm6]	G	T	2.698e^-4	0.876	INTERGENIC
2R	13247165	2R_13247165_SNP [dm3] 2R_17359660_SNP [dm6]	T	A	2.702e^-4	0.876	STOP_LOST mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15082701	2R_15082701_SNP [dm3] 2R_19195196_SNP [dm6]	T	G	2.704e^-4	0.876	INTRON hppy
2R	11775528	2R_11775528_INS [dm3] 2R_15888023_INS [dm6]	G	GG	2.714e^-4	0.876	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	6183055	2R_6183055_SNP [dm3] 2R_10295550_SNP [dm6]	A	G	2.723e^-4	0.876	INTRON CAP
2L	13145142	2L_13145142_SNP [dm3] 2L_13145142_SNP [dm6]	T	A	2.726e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_inv
X	3870837	X_3870837_SNP [dm3] X_3976804_SNP [dm6]	C	T	2.730e^-4	0.876	INTERGENIC
X	14562143	X_14562143_INS [dm3] X_14668110_INS [dm6]	T	TGATCC	2.733e^-4	0.876	INTERGENIC
X	14562147	X_14562147_SNP [dm3] X_14668114_SNP [dm6]	T	G	2.733e^-4	0.876	INTERGENIC
3L	15221933	3L_15221933_SNP [dm3] 3L_15228833_SNP [dm6]	A	T	2.763e^-4	0.876	INTERGENIC
3L	3101824	3L_3101824_SNP [dm3] 3L_3101824_SNP [dm6]	C	T	2.765e^-4	0.876	INTRON Cht7
2R	7792580	2R_7792580_SNP [dm3] 2R_11905075_SNP [dm6]	C	T	2.773e^-4	0.876	SYNONYMOUS_CODING CG13183	TF binding site mE1_TFBS_inv
2L	4925924	2L_4925924_SNP [dm3] 2L_4925924_SNP [dm6]	C	T	2.774e^-4	0.876	UTR_5_PRIME hoe1 INTRON hoe1
3R	14781266	3R_14781266_SNP [dm3] 3R_18955544_SNP [dm6]	G	C	2.774e^-4	0.876	INTRON CG42613 & 1 other
3L	9327918	3L_9327918_SNP [dm3] 3L_9334818_SNP [dm6]	T	C	2.783e^-4	0.876	SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
3R	15002066	3R_15002066_SNP [dm3] 3R_19176344_SNP [dm6]	A	T	2.784e^-4	0.876	UPSTREAM CG14282 INTERGENIC
2L	11461937	2L_11461937_SNP [dm3] 2L_11461937_SNP [dm6]	G	A	2.784e^-4	0.876	INTERGENIC
3L	5813479	3L_5813479_SNP [dm3] 3L_5820379_SNP [dm6]	A	T	2.790e^-4	0.876	INTRON vn
3R	15829822	3R_15829822_SNP [dm3] 3R_20004100_SNP [dm6]	A	G	2.796e^-4	0.876	INTRON Hs6st
2R	11686137	2R_11686137_SNP [dm3] 2R_15798632_SNP [dm6]	C	T	2.803e^-4	0.876	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11476859	2R_11476859_SNP [dm3] 2R_15589354_SNP [dm6]	C	T	2.806e^-4	0.876	INTERGENIC
3R	7829864	3R_7829864_SNP [dm3] 3R_12004142_SNP [dm6]	G	A	2.807e^-4	0.876	DOWNSTREAM Ect3 INTRON Tk
2L	6475042	2L_6475042_SNP [dm3] 2L_6475042_SNP [dm6]	A	G	2.811e^-4	0.876	SYNONYMOUS_CODING CG9536	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15381433	2R_15381433_DEL [dm3] 2R_19493928_DEL [dm6]	TACA	T	2.816e^-4	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	7592889	2L_7592889_SNP [dm3] 2L_7592889_SNP [dm6]	G	T	2.816e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19021306	2L_19021306_SNP [dm3] 2L_19021306_SNP [dm6]	T	C	2.816e^-4	0.876	INTERGENIC
2R	15381439	2R_15381439_INS [dm3] 2R_19493934_INS [dm6]	A	ATTTT	2.831e^-4	0.876	UTR_3_PRIME Rep DOWNSTREAM hpo
3L	9506110	3L_9506110_SNP [dm3] 3L_9513010_SNP [dm6]	A	T	2.834e^-4	0.876	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
X	1463922	X_1463922_SNP [dm3] X_1569889_SNP [dm6]	A	T	2.845e^-4	0.876	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4007975	2L_4007975_SNP [dm3] 2L_4007975_SNP [dm6]	T	C	2.849e^-4	0.876	UTR_3_PRIME CG43773 UPSTREAM CG43774
2L	7053419	2L_7053419_DEL [dm3] 2L_7053419_DEL [dm6]	TT	C	2.851e^-4	0.876	INTRON milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19904849	2L_19904849_SNP [dm3] 2L_19904849_SNP [dm6]	G	A	2.852e^-4	0.876	INTRON sick
2L	1715536	2L_1715536_SNP [dm3] 2L_1715536_SNP [dm6]	A	G	2.862e^-4	0.876	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	22469164	3R_22469164_INS [dm3] 3R_26643442_INS [dm6]	A	ACA	2.864e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	19063732	3R_19063732_SNP [dm3] 3R_23238010_SNP [dm6]	A	T	2.874e^-4	0.876	INTRON CG4467
X	15664030	X_15664030_SNP [dm3] X_15769997_SNP [dm6]	A	G	2.875e^-4	0.876	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	14562177	X_14562177_SNP [dm3] X_14668144_SNP [dm6]	G	A	2.876e^-4	0.876	INTERGENIC
2R	11668811	2R_11668811_SNP [dm3] 2R_15781306_SNP [dm6]	G	A	2.878e^-4	0.876	INTRON Zasp52
2R	2663631	2R_2663631_SNP [dm3] 2R_6776126_SNP [dm6]	G	A	2.882e^-4	0.876	INTRON Epac	TF binding site mE1_TFBS_cad
2R	11290090	2R_11290090_SNP [dm3] 2R_15402585_SNP [dm6]	G	T	2.891e^-4	0.876	INTRON CG43729
2L	16058359	2L_16058359_SNP [dm3] 2L_16058359_SNP [dm6]	T	G	2.895e^-4	0.876	INTRON beat-Ia
2L	11635048	2L_11635048_SNP [dm3] 2L_11635048_SNP [dm6]	A	T	2.898e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14775788	3R_14775788_SNP [dm3] 3R_18950066_SNP [dm6]	T	C	2.901e^-4	0.876	UPSTREAM CG42613 & 1 other INTRON CG42613
2R	9664899	2R_9664899_DEL [dm3] 2R_13777394_DEL [dm6]	GT	G	2.911e^-4	0.876	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
3L	16350365	3L_16350365_SNP [dm3] 3L_16357265_SNP [dm6]	A	T	2.911e^-4	0.876	UPSTREAM CG45057 INTRON CG45057
2L	19973208	2L_19973208_SNP [dm3] 2L_19973208_SNP [dm6]	T	A	2.916e^-4	0.876	INTRON CG43861
X	3640547	X_3640547_SNP [dm3] X_3746514_SNP [dm6]	A	C	2.920e^-4	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	8299205	2L_8299205_SNP [dm3] 2L_8299205_SNP [dm6]	C	T	2.924e^-4	0.876	INTRON Btk29A
2R	6405399	2R_6405399_SNP [dm3] 2R_10517894_SNP [dm6]	T	G	2.932e^-4	0.876	DOWNSTREAM lola INTRON lola
X	14562012	X_14562012_SNP [dm3] X_14667979_SNP [dm6]	A	G	2.935e^-4	0.876	INTERGENIC
3R	22519887	3R_22519887_SNP [dm3] 3R_26694165_SNP [dm6]	C	T	2.941e^-4	0.876	UPSTREAM TwdlQ INTERGENIC
3L	9327839	3L_9327839_SNP [dm3] 3L_9334739_SNP [dm6]	C	T	2.949e^-4	0.876	NON_SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
2R	1595901	2R_1595901_SNP [dm3] 2R_5708396_SNP [dm6]	G	A	2.949e^-4	0.876	INTRON ap	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	14816741	2R_14816741_SNP [dm3] 2R_18929236_SNP [dm6]	G	A	2.950e^-4	0.876	INTRON sano
X	2708178	X_2708178_SNP [dm3] X_2814145_SNP [dm6]	A	G	2.956e^-4	0.876	INTRON kirre
X	13653542	X_13653542_SNP [dm3] X_13759509_SNP [dm6]	T	G	2.980e^-4	0.876	UPSTREAM Yp3 DOWNSTREAM Rtc1 INTERGENIC
2R	14556188	2R_14556188_DEL [dm3] 2R_18668683_DEL [dm6]	ACA	A	2.984e^-4	0.876	INTRON edl
3L	19157323	3L_19157323_SNP [dm3] 3L_19164223_SNP [dm6]	C	G	2.986e^-4	0.876	INTRON fz2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	9101565	3R_9101565_SNP [dm3] 3R_13275843_SNP [dm6]	C	G	2.988e^-4	0.876	INTERGENIC
X	14752072	X_14752072_SNP [dm3] X_14858039_SNP [dm6]	G	T	3.000e^-4	0.876	INTRON Flo2
3L	16335469	3L_16335469_SNP [dm3] 3L_16342369_SNP [dm6]	C	A	3.001e^-4	0.876	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5406117	X_5406117_DEL [dm3] X_5512084_DEL [dm6]	AGTGTAACCCCGGAATTGG...	A	3.005e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19903674	2L_19903674_SNP [dm3] 2L_19903674_SNP [dm6]	T	C	3.008e^-4	0.876	INTRON sick
2L	14577910	2L_14577910_SNP [dm3] 2L_14577910_SNP [dm6]	A	G	3.008e^-4	0.876	DOWNSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11982573	2R_11982573_DEL [dm3] 2R_16095068_DEL [dm6]	AC	T	3.018e^-4	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	22135717	X_22135717_SNP [dm3] X_22733881_SNP [dm6]	T	C	3.019e^-4	0.876	INTRON CR44997
2R	3001021	2R_3001021_DEL [dm3] 2R_7113516_DEL [dm6]	TGGGCT	T	3.021e^-4	0.876	INTRON esn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19145627	3L_19145627_SNP [dm3] 3L_19152527_SNP [dm6]	G	A	3.027e^-4	0.876	INTRON fz2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	11421074	2R_11421074_SNP [dm3] 2R_15533569_SNP [dm6]	G	C	3.028e^-4	0.876	UTR_5_PRIME CG30471
3R	25039485	3R_25039485_SNP [dm3] 3R_29213763_SNP [dm6]	A	G	3.031e^-4	0.876	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9741037	2R_9741037_SNP [dm3] 2R_13853532_SNP [dm6]	T	G	3.038e^-4	0.876	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12194635	2L_12194635_SNP [dm3] 2L_12194635_SNP [dm6]	T	A	3.045e^-4	0.876	INTRON aret
3R	9267290	3R_9267290_SNP [dm3] 3R_13441568_SNP [dm6]	C	T	3.092e^-4	0.876	INTERGENIC
2R	10841950	2R_10841950_SNP [dm3] 2R_14954445_SNP [dm6]	T	C	3.093e^-4	0.876	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18395164	3R_18395164_SNP [dm3] 3R_22569442_SNP [dm6]	C	A	3.094e^-4	0.876	UPSTREAM CG33110 INTERGENIC
3R	18945905	3R_18945905_SNP [dm3] 3R_23120183_SNP [dm6]	C	T	3.096e^-4	0.876	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19830394	3R_19830394_SNP [dm3] 3R_24004672_SNP [dm6]	C	A	3.107e^-4	0.876	INTRON KrT95D
2R	4949652	2R_4949652_SNP [dm3] 2R_9062147_SNP [dm6]	T	G	3.109e^-4	0.876	UPSTREAM ana & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	19924956	2L_19924956_SNP [dm3] 2L_19924956_SNP [dm6]	G	T	3.111e^-4	0.876	INTRON sick
3R	22458811	3R_22458811_SNP [dm3] 3R_26633089_SNP [dm6]	G	A	3.113e^-4	0.876	UPSTREAM TwdlH DOWNSTREAM TwdlN INTERGENIC
2L	12636329	2L_12636329_SNP [dm3] 2L_12636329_SNP [dm6]	A	C	3.121e^-4	0.876	INTRON Ref2
X	11585182	X_11585182_SNP [dm3] X_11691149_SNP [dm6]	G	A	3.126e^-4	0.876	SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo
2R	7897368	2R_7897368_SNP [dm3] 2R_12009863_SNP [dm6]	A	C	3.131e^-4	0.876	INTRON otk	regulatory region REDfly_CRMs
2L	19020846	2L_19020846_SNP [dm3] 2L_19020846_SNP [dm6]	C	T	3.135e^-4	0.876	UPSTREAM CR44184 INTERGENIC
3L	9506105	3L_9506105_SNP [dm3] 3L_9513005_SNP [dm6]	G	A	3.136e^-4	0.876	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
X	11103489	X_11103489_SNP [dm3] X_11209456_SNP [dm6]	G	T	3.140e^-4	0.876	INTERGENIC
3L	5986769	3L_5986769_SNP [dm3] 3L_5993669_SNP [dm6]	C	G	3.143e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19013594	3R_19013594_SNP [dm3] 3R_23187872_SNP [dm6]	C	T	3.147e^-4	0.876	SPLICE_SITE_REGION cnc INTRON cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3498957	3L_3498957_SNP [dm3] 3L_3498957_SNP [dm6]	A	G	3.173e^-4	0.876	INTRON CG42324
2L	20759357	2L_20759357_SNP [dm3] 2L_20759357_SNP [dm6]	C	A	3.182e^-4	0.876	UPSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	11925290	2L_11925290_SNP [dm3] 2L_11925290_SNP [dm6]	G	T	3.182e^-4	0.876	INTRON Pde1c
3R	19143650	3R_19143650_SNP [dm3] 3R_23317928_SNP [dm6]	A	G	3.184e^-4	0.876	INTRON pnt
3L	12851246	3L_12851246_SNP [dm3] 3L_12858146_SNP [dm6]	T	A	3.195e^-4	0.876	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
3R	25008481	3R_25008481_SNP [dm3] 3R_29182759_SNP [dm6]	G	A	3.204e^-4	0.876	INTRON CG14509
3R	13011197	3R_13011197_SNP [dm3] 3R_17185475_SNP [dm6]	T	A	3.208e^-4	0.876	INTRON Mur89F
X	9449983	X_9449983_SNP [dm3] X_9555950_SNP [dm6]	A	G	3.216e^-4	0.876	SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	3.224e^-4	0.876	UTR_3_PRIME Ndae1 INTRON Ndae1
3L	2597995	3L_2597995_SNP [dm3] 3L_2597995_SNP [dm6]	G	A	3.228e^-4	0.876	SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11023119	3R_11023119_SNP [dm3] 3R_15197397_SNP [dm6]	C	T	3.232e^-4	0.876	INTRON CG42542	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_kn mE1_TFBS_zfh1
X	15441145	X_15441145_SNP [dm3] X_15547112_SNP [dm6]	C	T	3.242e^-4	0.876	UPSTREAM CR44354 DOWNSTREAM CR44353 INTRON Ac13E
2R	5124578	2R_5124578_SNP [dm3] 2R_9237073_SNP [dm6]	T	C	3.244e^-4	0.876	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
2R	7827865	2R_7827865_SNP [dm3] 2R_11940360_SNP [dm6]	T	C	3.246e^-4	0.876	INTRON CG13188
2L	20591148	2L_20591148_SNP [dm3] 2L_20591148_SNP [dm6]	T	A	3.247e^-4	0.876	INTRON CR44909
X	18993184	X_18993184_SNP [dm3] X_19099151_SNP [dm6]	C	T	3.263e^-4	0.876	INTERGENIC
3L	4099518	3L_4099518_SNP [dm3] 3L_4099518_SNP [dm6]	T	G	3.264e^-4	0.876	INTRON CG14995	TF binding site mE1_TFBS_inv
3R	6457491	3R_6457491_SNP [dm3] 3R_10631769_SNP [dm6]	A	G	3.265e^-4	0.876	INTRON hth	TF binding site mE1_TFBS_cad
3R	17146898	3R_17146898_SNP [dm3] 3R_21321176_SNP [dm6]	A	C	3.265e^-4	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
X	1477053	X_1477053_SNP [dm3] X_1583020_SNP [dm6]	G	A	3.272e^-4	0.876	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_chinmo
2L	17376944	2L_17376944_SNP [dm3] 2L_17376944_SNP [dm6]	T	G	3.273e^-4	0.876	INTRON Lrch
X	6322130	X_6322130_SNP [dm3] X_6428097_SNP [dm6]	A	G	3.291e^-4	0.876	INTRON CG42340
X	6322131	X_6322131_SNP [dm3] X_6428098_SNP [dm6]	A	T	3.291e^-4	0.876	INTRON CG42340
3R	9243126	3R_9243126_DEL [dm3] 3R_13417404_DEL [dm6]	TAT	T	3.297e^-4	0.876	INTERGENIC
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	3.304e^-4	0.876	INTERGENIC
2R	6939561	2R_6939561_SNP [dm3] 2R_11052056_SNP [dm6]	A	T	3.310e^-4	0.876	INTRON luna
3L	2677993	3L_2677993_SNP [dm3] 3L_2677993_SNP [dm6]	G	A	3.311e^-4	0.876	INTRON Fife
2L	15096143	2L_15096143_DEL [dm3] 2L_15096143_DEL [dm6]	CA	G	3.311e^-4	0.876	UTR_3_PRIME CG15270
3R	26548590	3R_26548590_SNP [dm3] 3R_30722868_SNP [dm6]	A	C	3.316e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21870795	3L_21870795_SNP [dm3] 3L_21877695_SNP [dm6]	G	T	3.323e^-4	0.876	INTRON mub	transposable element FlyBase
2L	11221916	2L_11221916_SNP [dm3] 2L_11221916_SNP [dm6]	C	T	3.330e^-4	0.876	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9327865	3L_9327865_SNP [dm3] 3L_9334765_SNP [dm6]	T	C	3.338e^-4	0.876	SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
2L	13091568	2L_13091568_SNP [dm3] 2L_13091568_SNP [dm6]	C	T	3.340e^-4	0.876	INTERGENIC
X	9039697	X_9039697_SNP [dm3] X_9145664_SNP [dm6]	G	A	3.344e^-4	0.876	INTRON CG7065
2L	11635046	2L_11635046_SNP [dm3] 2L_11635046_SNP [dm6]	T	C	3.354e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13653535	X_13653535_SNP [dm3] X_13759502_SNP [dm6]	T	G	3.370e^-4	0.876	UPSTREAM Yp3 DOWNSTREAM Rtc1 INTERGENIC
2L	22037945	2L_22037945_SNP [dm3] 2L_22037945_SNP [dm6]	G	C	3.371e^-4	0.876	UTR_5_PRIME CG41434 UPSTREAM CG41434
3R	9053481	3R_9053481_SNP [dm3] 3R_13227759_SNP [dm6]	G	T	3.372e^-4	0.876	UTR_3_PRIME Ace DOWNSTREAM Ace INTRON Ace
3L	8356148	3L_8356148_SNP [dm3] 3L_8363048_SNP [dm6]	A	T	3.372e^-4	0.876	INTERGENIC
2L	4488383	2L_4488383_SNP [dm3] 2L_4488383_SNP [dm6]	A	G	3.374e^-4	0.876	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14562038	X_14562038_SNP [dm3] X_14668005_SNP [dm6]	C	G	3.385e^-4	0.876	INTERGENIC
3L	4178993	3L_4178993_SNP [dm3] 3L_4178993_SNP [dm6]	T	C	3.393e^-4	0.876	UTR_3_PRIME Teh2 UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	4965046	3L_4965046_SNP [dm3] 3L_4965046_SNP [dm6]	C	T	3.394e^-4	0.876	INTRON Con
2L	1839177	2L_1839177_SNP [dm3] 2L_1839177_SNP [dm6]	C	T	3.411e^-4	0.876	DOWNSTREAM CR44073 & 1 other INTRON wry
X	9039692	X_9039692_SNP [dm3] X_9145659_SNP [dm6]	A	T	3.416e^-4	0.876	INTRON CG7065
X	11014168	X_11014168_SNP [dm3] X_11120135_SNP [dm6]	T	A	3.416e^-4	0.876	NON_SYNONYMOUS_CODING CG11122	TF binding site mE1_TFBS_chinmo
3R	27690772	3R_27690772_INS [dm3] 3R_31865050_INS [dm6]	A	ACTTATTTATTGCA...	3.426e^-4	0.876	INTRON heph
2L	12904222	2L_12904222_SNP [dm3] 2L_12904222_SNP [dm6]	C	G	3.426e^-4	0.876	INTERGENIC
2L	19420533	2L_19420533_SNP [dm3] 2L_19420533_SNP [dm6]	T	A	3.431e^-4	0.876	DOWNSTREAM lectin-37Db INTRON Pax
3R	6347881	3R_6347881_SNP [dm3] 3R_10522159_SNP [dm6]	T	C	3.432e^-4	0.876	INTRON hth
2L	5631929	2L_5631929_SNP [dm3] 2L_5631929_SNP [dm6]	C	T	3.432e^-4	0.876	INTRON CG31646 EXON CR44822
2L	1239908	2L_1239908_SNP [dm3] 2L_1239908_SNP [dm6]	C	A	3.438e^-4	0.876	UPSTREAM CG5397 INTERGENIC
3R	22461922	3R_22461922_SNP [dm3] 3R_26636200_SNP [dm6]	G	A	3.439e^-4	0.876	UPSTREAM TwdlS DOWNSTREAM TwdlR INTERGENIC
X	5464848	X_5464848_DEL [dm3] X_5570815_DEL [dm6]	TAT	T	3.440e^-4	0.876	INTERGENIC
X	14562186	X_14562186_DEL [dm3] X_14668153_DEL [dm6]	TGTGTATTCAATTTGTT...	T	3.442e^-4	0.876	INTERGENIC
2L	11858733	2L_11858733_SNP [dm3] 2L_11858733_SNP [dm6]	T	G	3.445e^-4	0.876	INTRON Pde1c
2L	11438123	2L_11438123_SNP [dm3] 2L_11438123_SNP [dm6]	T	A	3.450e^-4	0.876	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15920794	2R_15920794_SNP [dm3] 2R_20033289_SNP [dm6]	C	G	3.452e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19420560	2L_19420560_SNP [dm3] 2L_19420560_SNP [dm6]	C	G	3.452e^-4	0.876	DOWNSTREAM lectin-37Db INTRON Pax
2L	20761396	2L_20761396_SNP [dm3] 2L_20761396_SNP [dm6]	C	T	3.464e^-4	0.876	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6973062	3R_6973062_SNP [dm3] 3R_11147340_SNP [dm6]	C	A	3.472e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19884571	3R_19884571_SNP [dm3] 3R_24058849_SNP [dm6]	A	C	3.473e^-4	0.876	SPLICE_SITE_REGION SMC1 INTRON SMC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	9490037	2R_9490037_SNP [dm3] 2R_13602532_SNP [dm6]	A	G	3.476e^-4	0.876	INTERGENIC
2L	13091197	2L_13091197_SNP [dm3] 2L_13091197_SNP [dm6]	T	C	3.478e^-4	0.876	DOWNSTREAM CR44197 INTERGENIC
2R	20299199	2R_20299199_SNP [dm3] 2R_24411676_SNP [dm6]	G	A	3.479e^-4	0.876	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4965032	3L_4965032_DEL [dm3] 3L_4965032_DEL [dm6]	AAACCCCTTTCCA...	A	3.485e^-4	0.876	INTRON Con
3L	3498948	3L_3498948_SNP [dm3] 3L_3498948_SNP [dm6]	G	T	3.487e^-4	0.876	INTRON CG42324
2L	10444616	2L_10444616_SNP [dm3] 2L_10444616_SNP [dm6]	A	G	3.491e^-4	0.876	INTRON loh
2L	1839772	2L_1839772_SNP [dm3] 2L_1839772_SNP [dm6]	C	A	3.510e^-4	0.876	DOWNSTREAM CR44074 INTRON wry EXON CR44073
3R	9220177	3R_9220177_SNP [dm3] 3R_13394455_SNP [dm6]	A	T	3.511e^-4	0.876	INTRON CCHa2
2R	8876136	2R_8876136_SNP [dm3] 2R_12988631_SNP [dm6]	A	G	3.512e^-4	0.876	INTERGENIC
3L	4965029	3L_4965029_SNP [dm3] 3L_4965029_SNP [dm6]	A	C	3.516e^-4	0.876	INTRON Con
2R	4626351	2R_4626351_SNP [dm3] 2R_8738846_SNP [dm6]	A	T	3.520e^-4	0.876	INTRON CG8740
2L	7577316	2L_7577316_SNP [dm3] 2L_7577316_SNP [dm6]	A	C	3.524e^-4	0.876	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	6819777	3L_6819777_SNP [dm3] 3L_6826677_SNP [dm6]	A	G	3.528e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19547463	2L_19547463_SNP [dm3] 2L_19547463_SNP [dm6]	A	G	3.531e^-4	0.876	UPSTREAM CG10337 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9111449	3R_9111449_SNP [dm3] 3R_13285727_SNP [dm6]	A	T	3.537e^-4	0.876	INTRON CG15888
2L	7086355	2L_7086355_SNP [dm3] 2L_7086355_SNP [dm6]	G	A	3.541e^-4	0.876	INTERGENIC
3L	10559328	3L_10559328_SNP [dm3] 3L_10566228_SNP [dm6]	T	A	3.544e^-4	0.876	INTRON A2bp1
2L	13134216	2L_13134216_SNP [dm3] 2L_13134216_SNP [dm6]	T	G	3.546e^-4	0.876	SYNONYMOUS_CODING CG5122
X	8830537	X_8830537_SNP [dm3] X_8936504_SNP [dm6]	G	C	3.559e^-4	0.876	INTRON rdgA
X	3641029	X_3641029_SNP [dm3] X_3746996_SNP [dm6]	G	T	3.560e^-4	0.876	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4489469	2L_4489469_DEL [dm3] 2L_4489469_DEL [dm6]	TTG	T	3.561e^-4	0.876	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5815341	3L_5815341_DEL [dm3] 3L_5822241_DEL [dm6]	AA	A	3.567e^-4	0.876	INTRON vn
2L	10444710	2L_10444710_SNP [dm3] 2L_10444710_SNP [dm6]	A	G	3.575e^-4	0.876	INTRON loh
X	4919486	X_4919486_SNP [dm3] X_5025453_SNP [dm6]	A	G	3.588e^-4	0.876	INTRON CR44833
2R	15073487	2R_15073487_SNP [dm3] 2R_19185982_SNP [dm6]	A	G	3.612e^-4	0.876	INTRON hppy
2R	20299358	2R_20299358_SNP [dm3] 2R_24411835_SNP [dm6]	T	G	3.616e^-4	0.876	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	18403954	3R_18403954_SNP [dm3] 3R_22578232_SNP [dm6]	T	C	3.617e^-4	0.876	INTRON CG33110
3R	9120438	3R_9120438_SNP [dm3] 3R_13294716_SNP [dm6]	A	C	3.620e^-4	0.876	UPSTREAM CG8773 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4488433	2L_4488433_SNP [dm3] 2L_4488433_SNP [dm6]	T	C	3.628e^-4	0.876	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1589089	2R_1589089_SNP [dm3] 2R_5701584_SNP [dm6]	G	C	3.629e^-4	0.876	UPSTREAM vlc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	14562020	X_14562020_SNP [dm3] X_14667987_SNP [dm6]	A	C	3.633e^-4	0.876	INTERGENIC
2R	3113013	2R_3113013_SNP [dm3] 2R_7225508_SNP [dm6]	T	C	3.636e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11645700	2L_11645700_SNP [dm3] 2L_11645700_SNP [dm6]	T	C	3.636e^-4	0.876	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
2L	19925236	2L_19925236_SNP [dm3] 2L_19925236_SNP [dm6]	A	T	3.639e^-4	0.876	INTRON sick
2L	3084460	2L_3084460_SNP [dm3] 2L_3084460_SNP [dm6]	A	G	3.642e^-4	0.876	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2646526	2L_2646526_SNP [dm3] 2L_2646526_SNP [dm6]	C	A	3.642e^-4	0.876	DOWNSTREAM CG9962 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17142110	3R_17142110_SNP [dm3] 3R_21316388_SNP [dm6]	T	A	3.646e^-4	0.876	UPSTREAM mir-4951 EXON Hsromega
2L	10103498	2L_10103498_SNP [dm3] 2L_10103498_SNP [dm6]	T	C	3.647e^-4	0.876	INTRON CG44153 & 1 other
2R	15774031	2R_15774031_SNP [dm3] 2R_19886526_SNP [dm6]	A	G	3.650e^-4	0.876	INTERGENIC
3R	6347083	3R_6347083_SNP [dm3] 3R_10521361_SNP [dm6]	T	C	3.653e^-4	0.876	INTRON hth
3R	18395310	3R_18395310_SNP [dm3] 3R_22569588_SNP [dm6]	G	C	3.656e^-4	0.876	UPSTREAM CG33110 INTERGENIC
2R	9804398	2R_9804398_SNP [dm3] 2R_13916893_SNP [dm6]	T	C	3.656e^-4	0.876	SYNONYMOUS_CODING shot
3L	16350415	3L_16350415_SNP [dm3] 3L_16357315_SNP [dm6]	C	T	3.659e^-4	0.876	UPSTREAM CG45057 INTRON CG45057
3L	5813601	3L_5813601_SNP [dm3] 3L_5820501_SNP [dm6]	C	T	3.665e^-4	0.876	INTRON vn
3R	18355992	3R_18355992_SNP [dm3] 3R_22530270_SNP [dm6]	C	T	3.668e^-4	0.876	DOWNSTREAM CG33093 INTRON CG33099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12557150	3L_12557150_SNP [dm3] 3L_12564050_SNP [dm6]	A	G	3.672e^-4	0.876	INTRON sowah
2L	6404868	2L_6404868_SNP [dm3] 2L_6404868_SNP [dm6]	A	C	3.673e^-4	0.876	INTRON CG42368
2L	8899986	2L_8899986_SNP [dm3] 2L_8899986_SNP [dm6]	C	G	3.674e^-4	0.876	INTRON CG34398
3L	7695404	3L_7695404_SNP [dm3] 3L_7702304_SNP [dm6]	T	G	3.677e^-4	0.876	INTRON CG32373 & 1 other
2L	20625290	2L_20625290_SNP [dm3] 2L_20625290_SNP [dm6]	C	T	3.687e^-4	0.876	EXON CR44909
3R	17141333	3R_17141333_SNP [dm3] 3R_21315611_SNP [dm6]	A	T	3.692e^-4	0.876	EXON Hsromega	TF binding site mE1_TFBS_zfh1
2R	11838206	2R_11838206_SNP [dm3] 2R_15950701_SNP [dm6]	C	T	3.701e^-4	0.876	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	735523	2L_735523_SNP [dm3] 2L_735523_SNP [dm6]	C	T	3.702e^-4	0.876	INTERGENIC
2R	10619543	2R_10619543_SNP [dm3] 2R_14732038_SNP [dm6]	A	G	3.704e^-4	0.876	INTERGENIC
3R	6347168	3R_6347168_SNP [dm3] 3R_10521446_SNP [dm6]	C	G	3.704e^-4	0.876	INTRON hth
3R	16307389	3R_16307389_SNP [dm3] 3R_20481667_SNP [dm6]	T	G	3.706e^-4	0.876	INTRON Gfrl
3L	4965030	3L_4965030_SNP [dm3] 3L_4965030_SNP [dm6]	T	C	3.711e^-4	0.876	INTRON Con
3R	27065104	3R_27065104_DEL [dm3] 3R_31239382_DEL [dm6]	TCAG	T	3.712e^-4	0.876	INTRON qless
2R	8994503	2R_8994503_SNP [dm3] 2R_13106998_SNP [dm6]	T	A	3.719e^-4	0.876	INTERGENIC
3L	13594123	3L_13594123_SNP [dm3] 3L_13601023_SNP [dm6]	G	A	3.721e^-4	0.876	INTRON bru-3
2L	19923165	2L_19923165_DEL [dm3] 2L_19923165_DEL [dm6]	ACTT	A	3.729e^-4	0.876	INTRON sick & 1 other EXON CR43827
2R	1429454	2R_1429454_DEL [dm3] 2R_5541949_DEL [dm6]	TATAAAGTCT	T	3.731e^-4	0.876	INTRON CG30438
2L	7536173	2L_7536173_SNP [dm3] 2L_7536173_SNP [dm6]	T	C	3.736e^-4	0.876	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7536177	2L_7536177_SNP [dm3] 2L_7536177_SNP [dm6]	G	A	3.736e^-4	0.876	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5326730	X_5326730_SNP [dm3] X_5432697_SNP [dm6]	A	C	3.737e^-4	0.876	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC
X	16758390	X_16758390_SNP [dm3] X_16864357_SNP [dm6]	C	T	3.740e^-4	0.876	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	6088701	3L_6088701_DEL [dm3] 3L_6095601_DEL [dm6]	AT	A	3.747e^-4	0.876	UPSTREAM CG10467 INTRON loj
2L	20120928	2L_20120928_SNP [dm3] 2L_20120928_SNP [dm6]	G	T	3.748e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3084461	2L_3084461_SNP [dm3] 2L_3084461_SNP [dm6]	A	G	3.750e^-4	0.876	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20730202	2L_20730202_SNP [dm3] 2L_20730202_SNP [dm6]	C	T	3.750e^-4	0.876	SYNONYMOUS_CODING CG9317 DOWNSTREAM CG9318	TF binding site mE1_TFBS_inv
3R	22581935	3R_22581935_SNP [dm3] 3R_26756213_SNP [dm6]	A	G	3.757e^-4	0.876	DOWNSTREAM CR45562 INTERGENIC
X	4938652	X_4938652_SNP [dm3] X_5044619_SNP [dm6]	C	G	3.772e^-4	0.876	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20763378	2L_20763378_SNP [dm3] 2L_20763378_SNP [dm6]	T	A	3.772e^-4	0.876	INTRON dia
2R	12764492	2R_12764492_SNP [dm3] 2R_16876987_SNP [dm6]	G	A	3.775e^-4	0.876	INTRON CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11167291	3L_11167291_SNP [dm3] 3L_11174191_SNP [dm6]	A	T	3.777e^-4	0.876	INTRON CG14142
3L	11153475	3L_11153475_SNP [dm3] 3L_11160375_SNP [dm6]	T	G	3.780e^-4	0.876	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3498951	3L_3498951_SNP [dm3] 3L_3498951_SNP [dm6]	T	A	3.781e^-4	0.876	INTRON CG42324
2R	897384	2R_897384_SNP [dm3] 2R_5009879_SNP [dm6]	A	G	3.782e^-4	0.876	INTRON Ir41a
3L	20288086	3L_20288086_SNP [dm3] 3L_20294986_SNP [dm6]	T	A	3.783e^-4	0.876	UTR_5_PRIME gogo DOWNSTREAM FRG1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13099913	X_13099913_SNP [dm3] X_13205880_SNP [dm6]	G	A	3.785e^-4	0.876	INTRON sno
2R	6129784	2R_6129784_SNP [dm3] 2R_10242279_SNP [dm6]	A	T	3.791e^-4	0.876	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12429955	X_12429955_DEL [dm3] X_12535922_DEL [dm6]	ATTGCAGGA	A	3.795e^-4	0.876	INTRON CG43921
2L	20120944	2L_20120944_DEL [dm3] 2L_20120944_DEL [dm6]	AG	A	3.804e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	2708205	X_2708205_SNP [dm3] X_2814172_SNP [dm6]	A	C	3.804e^-4	0.876	INTRON kirre
3L	16274700	3L_16274700_SNP [dm3] 3L_16281600_SNP [dm6]	G	A	3.806e^-4	0.876	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13824613	3L_13824613_SNP [dm3] 3L_13831513_SNP [dm6]	C	T	3.806e^-4	0.876	INTERGENIC
2R	11982592	2R_11982592_SNP [dm3] 2R_16095087_SNP [dm6]	C	T	3.813e^-4	0.876	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1398521	2L_1398521_SNP [dm3] 2L_1398521_SNP [dm6]	T	A	3.814e^-4	0.876	INTRON lea
3L	9328234	3L_9328234_SNP [dm3] 3L_9335134_SNP [dm6]	C	G	3.833e^-4	0.876	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	3.846e^-4	0.876	INTRON timeout
3L	11322444	3L_11322444_SNP [dm3] 3L_11329344_SNP [dm6]	A	T	3.854e^-4	0.876	INTERGENIC
2L	10427515	2L_10427515_SNP [dm3] 2L_10427515_SNP [dm6]	G	T	3.860e^-4	0.876	SYNONYMOUS_CODING KdelR UPSTREAM SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	11765591	2L_11765591_SNP [dm3] 2L_11765591_SNP [dm6]	A	G	3.861e^-4	0.876	INTERGENIC
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	3.867e^-4	0.876	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	20288087	3L_20288087_SNP [dm3] 3L_20294987_SNP [dm6]	A	C	3.867e^-4	0.876	UTR_5_PRIME gogo DOWNSTREAM FRG1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20760464	2L_20760464_SNP [dm3] 2L_20760464_SNP [dm6]	C	T	3.869e^-4	0.876	INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18403523	3R_18403523_SNP [dm3] 3R_22577801_SNP [dm6]	G	A	3.872e^-4	0.876	INTRON CG33110
2L	7592134	2L_7592134_SNP [dm3] 2L_7592134_SNP [dm6]	G	A	3.872e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8273012	2R_8273012_SNP [dm3] 2R_12385507_SNP [dm6]	A	C	3.880e^-4	0.876	DOWNSTREAM CG8501 INTERGENIC
3R	19584208	3R_19584208_SNP [dm3] 3R_23758486_SNP [dm6]	T	C	3.899e^-4	0.876	UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	1240643	2L_1240643_SNP [dm3] 2L_1240643_SNP [dm6]	T	C	3.904e^-4	0.876	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	485024	3L_485024_SNP [dm3] 3L_485024_SNP [dm6]	A	C	3.912e^-4	0.876	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11603913	2R_11603913_SNP [dm3] 2R_15716408_SNP [dm6]	A	C	3.917e^-4	0.876	INTERGENIC
3R	18482340	3R_18482340_SNP [dm3] 3R_22656618_SNP [dm6]	T	A	3.918e^-4	0.876	INTRON CG45058
2R	20562673	2R_20562673_SNP [dm3] 2R_24675150_SNP [dm6]	G	T	3.930e^-4	0.876	INTRON Mmp1	TF binding site mE1_TFBS_cad
2R	11605028	2R_11605028_SNP [dm3] 2R_15717523_SNP [dm6]	C	A	3.938e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15371285	2L_15371285_SNP [dm3] 2L_15371285_SNP [dm6]	T	G	3.940e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17881576	2L_17881576_SNP [dm3] 2L_17881576_SNP [dm6]	A	C	3.946e^-4	0.876	INTERGENIC
3R	19801873	3R_19801873_SNP [dm3] 3R_23976151_SNP [dm6]	A	C	3.947e^-4	0.876	INTRON CG31140	TF binding site mE1_TFBS_chinmo
3L	2848620	3L_2848620_SNP [dm3] 3L_2848620_SNP [dm6]	A	G	3.951e^-4	0.876	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	7279983	3L_7279983_SNP [dm3] 3L_7286883_SNP [dm6]	T	A	3.958e^-4	0.876	INTRON unc-13-4A
2R	12668943	2R_12668943_SNP [dm3] 2R_16781438_SNP [dm6]	G	A	3.959e^-4	0.876	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9446644	2L_9446644_SNP [dm3] 2L_9446644_SNP [dm6]	A	T	3.964e^-4	0.876	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	3.967e^-4	0.876	INTRON dpr8
2R	12765387	2R_12765387_SNP [dm3] 2R_16877882_SNP [dm6]	A	G	3.968e^-4	0.876	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	3.975e^-4	0.876	INTERGENIC
3R	25039782	3R_25039782_SNP [dm3] 3R_29214060_SNP [dm6]	A	T	4.002e^-4	0.876	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	16432646	2L_16432646_SNP [dm3] 2L_16432646_SNP [dm6]	G	C	4.010e^-4	0.876	INTRON CG5888
2L	15773720	2L_15773720_SNP [dm3] 2L_15773720_SNP [dm6]	A	G	4.011e^-4	0.876	UPSTREAM CG31826 INTERGENIC
2R	17420757	2R_17420757_SNP [dm3] 2R_21533252_SNP [dm6]	A	G	4.018e^-4	0.876	INTRON Egfr
X	17175387	X_17175387_SNP [dm3] X_17281354_SNP [dm6]	A	G	4.019e^-4	0.876	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20120929	2L_20120929_DEL [dm3] 2L_20120929_DEL [dm6]	GAATAAGACGCA...	G	4.019e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	11421863	2R_11421863_SNP [dm3] 2R_15534358_SNP [dm6]	A	G	4.028e^-4	0.876	INTRON CG30471
2R	7554748	2R_7554748_SNP [dm3] 2R_11667243_SNP [dm6]	G	A	4.031e^-4	0.876	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9478951	3R_9478951_SNP [dm3] 3R_13653229_SNP [dm6]	A	C	4.032e^-4	0.876	UTR_3_PRIME rin DOWNSTREAM rin
3R	21331478	3R_21331478_SNP [dm3] 3R_25505756_SNP [dm6]	C	T	4.034e^-4	0.876	SYNONYMOUS_CODING CG5107 UPSTREAM CG5111
2R	9463115	2R_9463115_SNP [dm3] 2R_13575610_SNP [dm6]	T	C	4.050e^-4	0.876	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11010422	3L_11010422_SNP [dm3] 3L_11017322_SNP [dm6]	T	C	4.052e^-4	0.876	INTERGENIC
3L	9328177	3L_9328177_SNP [dm3] 3L_9335077_SNP [dm6]	T	A	4.057e^-4	0.876	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	7239760	2L_7239760_SNP [dm3] 2L_7239760_SNP [dm6]	C	T	4.060e^-4	0.876	INTRON Ndae1
2R	16283642	2R_16283642_SNP [dm3] 2R_20396137_SNP [dm6]	A	G	4.065e^-4	0.876	INTERGENIC
3R	26779080	3R_26779080_SNP [dm3] 3R_30953358_SNP [dm6]	A	G	4.065e^-4	0.876	INTERGENIC
2L	18284104	2L_18284104_SNP [dm3] 2L_18284104_SNP [dm6]	G	A	4.066e^-4	0.876	DOWNSTREAM CG31787 INTERGENIC
3R	19644427	3R_19644427_SNP [dm3] 3R_23818705_SNP [dm6]	A	G	4.067e^-4	0.876	START_GAINED CG33111 UTR_5_PRIME CG33111 UPSTREAM eIF4G2 INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9836183	3L_9836183_SNP [dm3] 3L_9843083_SNP [dm6]	A	G	4.071e^-4	0.876	INTRON RasGAP1
3R	26051644	3R_26051644_SNP [dm3] 3R_30225922_SNP [dm6]	T	A	4.080e^-4	0.876	INTERGENIC
X	3636360	X_3636360_SNP [dm3] X_3742327_SNP [dm6]	G	T	4.081e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	7118333	2L_7118333_SNP [dm3] 2L_7118333_SNP [dm6]	G	A	4.084e^-4	0.876	INTRON Pvf3
X	12993732	X_12993732_SNP [dm3] X_13099699_SNP [dm6]	A	G	4.086e^-4	0.876	INTRON CG43313
3R	6451756	3R_6451756_SNP [dm3] 3R_10626034_SNP [dm6]	A	G	4.087e^-4	0.876	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22040599	2L_22040599_SNP [dm3] 2L_22040599_SNP [dm6]	C	T	4.090e^-4	0.876	DOWNSTREAM CG31601 & 1 other INTERGENIC
X	13101417	X_13101417_SNP [dm3] X_13207384_SNP [dm6]	T	A	4.093e^-4	0.876	INTRON sno
2L	20024515	2L_20024515_SNP [dm3] 2L_20024515_SNP [dm6]	T	A	4.094e^-4	0.876	DOWNSTREAM CG10659 INTERGENIC
2L	11437715	2L_11437715_SNP [dm3] 2L_11437715_SNP [dm6]	G	T	4.094e^-4	0.876	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9191868	3R_9191868_SNP [dm3] 3R_13366146_SNP [dm6]	A	G	4.097e^-4	0.876	INTRON poly & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3191904	3L_3191904_SNP [dm3] 3L_3191904_SNP [dm6]	G	T	4.100e^-4	0.876	NON_SYNONYMOUS_CODING CG14965	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3834843	2L_3834843_SNP [dm3] 2L_3834843_SNP [dm6]	A	T	4.101e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
X	8501382	X_8501382_SNP [dm3] X_8607349_SNP [dm6]	G	T	4.130e^-4	0.876	INTERGENIC
3R	6335486	3R_6335486_SNP [dm3] 3R_10509764_SNP [dm6]	A	C	4.132e^-4	0.876	UTR_3_PRIME hth DOWNSTREAM hth	TF binding site mE1_TFBS_zfh1
2R	15565727	2R_15565727_SNP [dm3] 2R_19678222_SNP [dm6]	C	T	4.138e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14647451	3R_14647451_SNP [dm3] 3R_18821729_SNP [dm6]	T	C	4.139e^-4	0.876	INTRON CG18208
3L	13048037	3L_13048037_SNP [dm3] 3L_13054937_SNP [dm6]	A	T	4.142e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4485647	2L_4485647_SNP [dm3] 2L_4485647_SNP [dm6]	T	C	4.150e^-4	0.876	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19946766	2L_19946766_SNP [dm3] 2L_19946766_SNP [dm6]	G	A	4.157e^-4	0.876	INTRON sick
3R	20917345	3R_20917345_INS [dm3] 3R_25091623_INS [dm6]	A	ATATAACTATGCTTATCA...	4.158e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1593641	2R_1593641_SNP [dm3] 2R_5706136_SNP [dm6]	T	A	4.160e^-4	0.876	DOWNSTREAM ap & 1 other INTERGENIC
X	9039303	X_9039303_SNP [dm3] X_9145270_SNP [dm6]	T	A	4.161e^-4	0.876	INTRON CG7065
2R	9463110	2R_9463110_SNP [dm3] 2R_13575605_SNP [dm6]	A	T	4.165e^-4	0.876	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22239923	X_22239923_SNP [dm3] X_22838087_SNP [dm6]	C	A	4.167e^-4	0.876	INTRON fog & 1 other	transposable element FlyBase
3R	21342509	3R_21342509_SNP [dm3] 3R_25516787_SNP [dm6]	A	G	4.174e^-4	0.876	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3535169	2R_3535169_SNP [dm3] 2R_7647664_SNP [dm6]	G	A	4.174e^-4	0.876	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	13087179	2R_13087179_SNP [dm3] 2R_17199674_SNP [dm6]	G	T	4.182e^-4	0.876	INTERGENIC
2L	8087687	2L_8087687_SNP [dm3] 2L_8087687_SNP [dm6]	A	G	4.184e^-4	0.876	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	21251244	X_21251244_SNP [dm3] X_21380217_SNP [dm6]	A	G	4.189e^-4	0.876	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27886033	3R_27886033_SNP [dm3] 3R_32060311_SNP [dm6]	T	G	4.192e^-4	0.876	INTRON Map205
X	3449624	X_3449624_SNP [dm3] X_3555591_SNP [dm6]	A	T	4.202e^-4	0.876	INTRON CG32791
3L	9546163	3L_9546163_SNP [dm3] 3L_9553063_SNP [dm6]	T	A	4.203e^-4	0.876	UTR_5_PRIME CG42673
2L	11298036	2L_11298036_SNP [dm3] 2L_11298036_SNP [dm6]	T	C	4.203e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9328244	3L_9328244_SNP [dm3] 3L_9335144_SNP [dm6]	G	C	4.205e^-4	0.876	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	9323078	3L_9323078_SNP [dm3] 3L_9329978_SNP [dm6]	T	G	4.205e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14032832	2L_14032832_SNP [dm3] 2L_14032832_SNP [dm6]	T	A	4.212e^-4	0.876	EXON CR45284
2R	17405890	2R_17405890_SNP [dm3] 2R_21518385_SNP [dm6]	G	A	4.216e^-4	0.876	NON_SYNONYMOUS_CODING CG10494 DOWNSTREAM CG30288	TF binding site mE1_TFBS_sens
X	14301470	X_14301470_SNP [dm3] X_14407437_SNP [dm6]	T	C	4.219e^-4	0.876	INTRON dpr8
X	5333734	X_5333734_SNP [dm3] X_5439701_SNP [dm6]	C	G	4.219e^-4	0.876	INTERGENIC
3L	8199232	3L_8199232_SNP [dm3] 3L_8206132_SNP [dm6]	C	T	4.220e^-4	0.876	INTERGENIC
3R	14712078	3R_14712078_SNP [dm3] 3R_18886356_SNP [dm6]	C	A	4.226e^-4	0.876	INTERGENIC
3R	17146899	3R_17146899_SNP [dm3] 3R_21321177_SNP [dm6]	G	A	4.227e^-4	0.876	INTRON CG16791	TF binding site mE1_TFBS_cad
X	14562208	X_14562208_SNP [dm3] X_14668175_SNP [dm6]	A	G	4.227e^-4	0.876	INTERGENIC
X	15664094	X_15664094_SNP [dm3] X_15770061_SNP [dm6]	T	C	4.239e^-4	0.876	SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	2675205	2L_2675205_SNP [dm3] 2L_2675205_SNP [dm6]	G	C	4.240e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17730358	2R_17730358_SNP [dm3] 2R_21842853_SNP [dm6]	C	T	4.242e^-4	0.876	DOWNSTREAM tRNA:CR30407 INTERGENIC
3R	26686115	3R_26686115_INS [dm3] 3R_30860393_INS [dm6]	A	AAGTGGTATGTCT...	4.244e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3640098	X_3640098_SNP [dm3] X_3746065_SNP [dm6]	A	C	4.245e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	19884753	3R_19884753_SNP [dm3] 3R_24059031_SNP [dm6]	C	G	4.252e^-4	0.876	INTRON SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8327828	2R_8327828_SNP [dm3] 2R_12440323_SNP [dm6]	G	A	4.259e^-4	0.876	DOWNSTREAM CG30334 INTRON Dyb
3R	10189381	3R_10189381_DEL [dm3] 3R_14363659_DEL [dm6]	ATGTA	A	4.263e^-4	0.876	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14001799	2L_14001799_SNP [dm3] 2L_14001799_SNP [dm6]	A	G	4.271e^-4	0.876	UPSTREAM rk INTERGENIC
X	14561975	X_14561975_SNP [dm3] X_14667942_SNP [dm6]	T	A	4.286e^-4	0.876	INTERGENIC
3L	8377747	3L_8377747_SNP [dm3] 3L_8384647_SNP [dm6]	T	C	4.292e^-4	0.876	INTRON ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19461297	2L_19461297_SNP [dm3] 2L_19461297_SNP [dm6]	A	T	4.296e^-4	0.876	INTERGENIC
2L	12116810	2L_12116810_SNP [dm3] 2L_12116810_SNP [dm6]	A	G	4.298e^-4	0.876	INTRON CG17211
2R	9969891	2R_9969891_SNP [dm3] 2R_14082386_SNP [dm6]	T	C	4.298e^-4	0.876	INTRON Prosap
2L	9598922	2L_9598922_SNP [dm3] 2L_9598922_SNP [dm6]	T	C	4.301e^-4	0.876	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3638770	X_3638770_SNP [dm3] X_3744737_SNP [dm6]	C	T	4.303e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
X	3639431	X_3639431_SNP [dm3] X_3745398_SNP [dm6]	C	T	4.303e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12668652	2R_12668652_SNP [dm3] 2R_16781147_SNP [dm6]	T	C	4.312e^-4	0.876	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14816692	2R_14816692_INS [dm3] 2R_18929187_INS [dm6]	T	TACAT	4.314e^-4	0.876	INTRON sano
2L	6918156	2L_6918156_SNP [dm3] 2L_6918156_SNP [dm6]	A	G	4.316e^-4	0.876	SYNONYMOUS_CODING nop5 UPSTREAM snoRNA:nop5-x16-a INTRON x16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19598197	2L_19598197_INS [dm3] 2L_19598197_INS [dm6]	A	AC	4.317e^-4	0.876	INTRON Lar
2R	15593606	2R_15593606_SNP [dm3] 2R_19706101_SNP [dm6]	T	A	4.319e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs
2R	18160821	2R_18160821_SNP [dm3] 2R_22273316_SNP [dm6]	G	A	4.324e^-4	0.876	INTRON dve	TF binding site mE1_TFBS_chinmo
2L	9773629	2L_9773629_SNP [dm3] 2L_9773629_SNP [dm6]	T	G	4.325e^-4	0.876	UPSTREAM ppk16 INTRON ppk11
3R	18727892	3R_18727892_SNP [dm3] 3R_22902170_SNP [dm6]	C	T	4.332e^-4	0.876	INTRON klg
2L	12213520	2L_12213520_SNP [dm3] 2L_12213520_SNP [dm6]	A	C	4.341e^-4	0.876	INTRON aret
3R	3852446	3R_3852446_SNP [dm3] 3R_8026724_SNP [dm6]	T	C	4.346e^-4	0.876	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19883647	3R_19883647_SNP [dm3] 3R_24057925_SNP [dm6]	A	C	4.353e^-4	0.876	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	20990341	3R_20990341_SNP [dm3] 3R_25164619_SNP [dm6]	A	T	4.377e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6820248	3L_6820248_INS [dm3] 3L_6827148_INS [dm6]	A	AT	4.380e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11686132	2R_11686132_SNP [dm3] 2R_15798627_SNP [dm6]	A	T	4.385e^-4	0.876	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3710484	3R_3710484_SNP [dm3] 3R_7884762_SNP [dm6]	A	C	4.385e^-4	0.876	INTRON CG17816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11605025	2R_11605025_SNP [dm3] 2R_15717520_SNP [dm6]	C	T	4.386e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	17175822	X_17175822_SNP [dm3] X_17281789_SNP [dm6]	A	G	4.389e^-4	0.876	UTR_3_PRIME CG8664 UPSTREAM CG5445 DOWNSTREAM f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8904549	2R_8904549_SNP [dm3] 2R_13017044_SNP [dm6]	A	G	4.389e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14564289	X_14564289_SNP [dm3] X_14670256_SNP [dm6]	A	G	4.391e^-4	0.876	INTERGENIC
2L	11209612	2L_11209612_SNP [dm3] 2L_11209612_SNP [dm6]	G	C	4.394e^-4	0.876	INTERGENIC
3R	9297052	3R_9297052_SNP [dm3] 3R_13471330_SNP [dm6]	G	C	4.395e^-4	0.876	INTERGENIC
3R	18471036	3R_18471036_SNP [dm3] 3R_22645314_SNP [dm6]	C	A	4.401e^-4	0.876	INTRON CG45058
X	17175089	X_17175089_SNP [dm3] X_17281056_SNP [dm6]	T	A	4.402e^-4	0.876	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
X	13575162	X_13575162_SNP [dm3] X_13681129_SNP [dm6]	G	C	4.403e^-4	0.876	UPSTREAM CG12177 INTERGENIC
2L	734135	2L_734135_SNP [dm3] 2L_734135_SNP [dm6]	G	A	4.407e^-4	0.876	INTERGENIC
2L	14000103	2L_14000103_SNP [dm3] 2L_14000103_SNP [dm6]	T	C	4.414e^-4	0.876	INTRON rk
2R	19728410	2R_19728410_SNP [dm3] 2R_23840887_SNP [dm6]	A	G	4.425e^-4	0.876	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM shu & 1 other INTERGENIC
2L	9799151	2L_9799151_SNP [dm3] 2L_9799151_SNP [dm6]	C	T	4.434e^-4	0.876	INTRON nAChRalpha6
2L	4485659	2L_4485659_SNP [dm3] 2L_4485659_SNP [dm6]	A	G	4.452e^-4	0.876	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8542728	2R_8542728_SNP [dm3] 2R_12655223_SNP [dm6]	G	A	4.454e^-4	0.876	SPLICE_SITE_REGION ZnT49B SYNONYMOUS_CODING ZnT49B UPSTREAM CG8646
3R	18540725	3R_18540725_SNP [dm3] 3R_22715003_SNP [dm6]	T	C	4.455e^-4	0.876	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18639588	X_18639588_SNP [dm3] X_18745555_SNP [dm6]	T	G	4.458e^-4	0.876	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3L	1287295	3L_1287295_SNP [dm3] 3L_1287295_SNP [dm6]	G	T	4.458e^-4	0.876	INTRON CG32333
2R	11690475	2R_11690475_SNP [dm3] 2R_15802970_SNP [dm6]	C	A	4.461e^-4	0.876	INTRON Zasp52 & 1 other
2R	12766068	2R_12766068_SNP [dm3] 2R_16878563_SNP [dm6]	T	G	4.463e^-4	0.876	INTRON CG8910
X	9449955	X_9449955_SNP [dm3] X_9555922_SNP [dm6]	G	T	4.465e^-4	0.876	NON_SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	14757022	X_14757022_SNP [dm3] X_14862989_SNP [dm6]	C	T	4.466e^-4	0.876	UTR_3_PRIME CG9518 INTRON Flo2
2R	15519867	2R_15519867_SNP [dm3] 2R_19632362_SNP [dm6]	G	A	4.482e^-4	0.876	UPSTREAM sm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	24656833	3R_24656833_SNP [dm3] 3R_28831111_SNP [dm6]	G	A	4.482e^-4	0.876	UTR_5_PRIME WASp INTRON WASp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	19728376	2R_19728376_SNP [dm3] 2R_23840853_SNP [dm6]	C	A	4.494e^-4	0.876	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
2L	6893756	2L_6893756_SNP [dm3] 2L_6893756_SNP [dm6]	C	T	4.495e^-4	0.876	INTRON Nlg2
2L	18199370	2L_18199370_SNP [dm3] 2L_18199370_SNP [dm6]	C	A	4.495e^-4	0.876	UPSTREAM CR43413 INTRON CG42750
3L	9865768	3L_9865768_SNP [dm3] 3L_9872668_SNP [dm6]	A	T	4.498e^-4	0.876	INTERGENIC
3L	11265440	3L_11265440_SNP [dm3] 3L_11272340_SNP [dm6]	A	G	4.504e^-4	0.876	INTERGENIC
X	12430060	X_12430060_DEL [dm3] X_12536027_DEL [dm6]	GCAATTGTTTTGAACCCTTT...	G	4.508e^-4	0.876	INTRON CG43921
2R	12766076	2R_12766076_SNP [dm3] 2R_16878571_SNP [dm6]	A	G	4.518e^-4	0.876	INTRON CG8910
X	9324317	X_9324317_SNP [dm3] X_9430284_SNP [dm6]	G	A	4.519e^-4	0.876	INTRON mgl
3R	9152826	3R_9152826_SNP [dm3] 3R_13327104_SNP [dm6]	C	T	4.521e^-4	0.876	INTERGENIC
2R	8871871	2R_8871871_SNP [dm3] 2R_12984366_SNP [dm6]	A	T	4.523e^-4	0.876	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24537910	3R_24537910_SNP [dm3] 3R_28712188_SNP [dm6]	T	C	4.531e^-4	0.876	INTRON htt
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	4.543e^-4	0.876	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	13135747	2L_13135747_SNP [dm3] 2L_13135747_SNP [dm6]	A	G	4.546e^-4	0.876	DOWNSTREAM CG5122 INTERGENIC
2L	11198515	2L_11198515_SNP [dm3] 2L_11198515_SNP [dm6]	G	A	4.558e^-4	0.876	INTRON Ca-beta
3R	11240781	3R_11240781_SNP [dm3] 3R_15415059_SNP [dm6]	G	C	4.577e^-4	0.876	UTR_3_PRIME Atx2 INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6141810	2R_6141810_SNP [dm3] 2R_10254305_SNP [dm6]	C	T	4.580e^-4	0.876	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12807571	2R_12807571_SNP [dm3] 2R_16920066_SNP [dm6]	G	A	4.588e^-4	0.876	INTERGENIC
2R	9744407	2R_9744407_SNP [dm3] 2R_13856902_SNP [dm6]	A	T	4.592e^-4	0.876	SYNONYMOUS_CODING tum	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14497374	3L_14497374_SNP [dm3] 3L_14504274_SNP [dm6]	C	G	4.593e^-4	0.876	INTRON bbg	transposable element FlyBase
X	14562138	X_14562138_SNP [dm3] X_14668105_SNP [dm6]	C	T	4.594e^-4	0.876	INTERGENIC
3R	25433935	3R_25433935_SNP [dm3] 3R_29608213_SNP [dm6]	G	T	4.605e^-4	0.876	UPSTREAM Diedel2 INTRON alph
2R	17152649	2R_17152649_SNP [dm3] 2R_21265144_SNP [dm6]	A	T	4.606e^-4	0.876	UTR_3_PRIME CG30391 INTRON Rgk3
2L	19967103	2L_19967103_SNP [dm3] 2L_19967103_SNP [dm6]	C	T	4.607e^-4	0.876	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad
2L	12197055	2L_12197055_SNP [dm3] 2L_12197055_SNP [dm6]	G	C	4.616e^-4	0.876	INTRON aret	TF binding site mE1_TFBS_inv
X	15441225	X_15441225_SNP [dm3] X_15547192_SNP [dm6]	A	G	4.624e^-4	0.876	UPSTREAM CR44354 DOWNSTREAM CR44353 INTRON Ac13E
2R	7792846	2R_7792846_DEL [dm3] 2R_11905341_DEL [dm6]	AA	A	4.624e^-4	0.876	INTRON CG13183
2R	19114540	2R_19114540_SNP [dm3] 2R_23227017_SNP [dm6]	T	A	4.625e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19854042	3L_19854042_DEL [dm3] 3L_19860942_DEL [dm6]	TG	A	4.627e^-4	0.876	UPSTREAM CR45433 DOWNSTREAM Papss INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17881371	2L_17881371_SNP [dm3] 2L_17881371_SNP [dm6]	T	G	4.631e^-4	0.876	INTERGENIC
X	14571158	X_14571158_DEL [dm3] X_14677125_DEL [dm6]	CCGCATC	C	4.637e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1363061	2L_1363061_SNP [dm3] 2L_1363061_SNP [dm6]	G	A	4.642e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11207601	2L_11207601_SNP [dm3] 2L_11207601_SNP [dm6]	A	T	4.645e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22095038	X_22095038_SNP [dm3] X_22693202_SNP [dm6]	T	C	4.658e^-4	0.876	INTRON CR44997
3L	11249853	3L_11249853_SNP [dm3] 3L_11256753_SNP [dm6]	C	T	4.658e^-4	0.876	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	4.658e^-4	0.876	UPSTREAM CR44964 INTRON CG14439
3R	22523461	3R_22523461_SNP [dm3] 3R_26697739_SNP [dm6]	C	A	4.663e^-4	0.876	UTR_3_PRIME amon
3L	9329342	3L_9329342_SNP [dm3] 3L_9336242_SNP [dm6]	T	C	4.674e^-4	0.876	UTR_5_PRIME PGRP-LA INTRON PGRP-LA
3L	9329343	3L_9329343_SNP [dm3] 3L_9336243_SNP [dm6]	T	G	4.674e^-4	0.876	UTR_5_PRIME PGRP-LA INTRON PGRP-LA
3R	24547236	3R_24547236_SNP [dm3] 3R_28721514_SNP [dm6]	T	G	4.681e^-4	0.876	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	7520272	3L_7520272_SNP [dm3] 3L_7527172_SNP [dm6]	A	G	4.688e^-4	0.876	UTR_3_PRIME ltl
3R	24056534	3R_24056534_INS [dm3] 3R_28230812_INS [dm6]	A	AA	4.690e^-4	0.876	INTRON CG34354
2R	6148258	2R_6148258_SNP [dm3] 2R_10260753_SNP [dm6]	A	G	4.690e^-4	0.876	DOWNSTREAM CR30009 INTRON CG12911
X	3643465	X_3643465_SNP [dm3] X_3749432_SNP [dm6]	A	T	4.692e^-4	0.876	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5209223	X_5209223_SNP [dm3] X_5315190_SNP [dm6]	C	T	4.696e^-4	0.876	UTR_3_PRIME CG4198 & 1 other	TF binding site mE1_TFBS_chinmo
X	9272242	X_9272242_SNP [dm3] X_9378209_SNP [dm6]	T	C	4.700e^-4	0.876	INTRON mgl
2L	734340	2L_734340_SNP [dm3] 2L_734340_SNP [dm6]	C	T	4.704e^-4	0.876	INTERGENIC
X	12993729	X_12993729_SNP [dm3] X_13099696_SNP [dm6]	T	A	4.705e^-4	0.876	INTRON CG43313
2L	14621313	2L_14621313_SNP [dm3] 2L_14621313_SNP [dm6]	A	T	4.706e^-4	0.876	INTRON osp
2L	18657513	2L_18657513_SNP [dm3] 2L_18657513_SNP [dm6]	A	G	4.707e^-4	0.876	INTRON MESR3
3L	9838478	3L_9838478_SNP [dm3] 3L_9845378_SNP [dm6]	A	G	4.713e^-4	0.876	SYNONYMOUS_CODING RasGAP1
3R	10590944	3R_10590944_SNP [dm3] 3R_14765222_SNP [dm6]	T	C	4.716e^-4	0.876	INTRON jvl
2L	17889949	2L_17889949_SNP [dm3] 2L_17889949_SNP [dm6]	G	C	4.717e^-4	0.876	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.516e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03004

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.8165	0.0546

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1748 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	21320615	3L_21320615_SNP [dm3] 3L_21327515_SNP [dm6]	A	T	5.679e^-7	0.601	INTRON Rab26
3R	24503653	3R_24503653_SNP [dm3] 3R_28677931_SNP [dm6]	T	G	6.409e^-7	0.601	INTRON CG9990
2R	5124606	2R_5124606_SNP [dm3] 2R_9237101_SNP [dm6]	A	C	1.028e^-6	0.621	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
3L	2584105	3L_2584105_SNP [dm3] 3L_2584105_SNP [dm6]	C	A	1.325e^-6	0.621	INTRON msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5124575	2R_5124575_SNP [dm3] 2R_9237070_SNP [dm6]	T	A	2.834e^-6	0.823	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
2L	9211197	2L_9211197_SNP [dm3] 2L_9211197_SNP [dm6]	G	A	2.848e^-6	0.823	INTRON tai
2L	7587476	2L_7587476_SNP [dm3] 2L_7587476_SNP [dm6]	C	A	3.100e^-6	0.823	INTERGENIC
2L	7587475	2L_7587475_SNP [dm3] 2L_7587475_SNP [dm6]	A	C	3.646e^-6	0.823	INTERGENIC
2R	14657630	2R_14657630_SNP [dm3] 2R_18770125_SNP [dm6]	T	C	3.950e^-6	0.823	UPSTREAM tRNA:CR30229 INTRON Mctp
2L	5487205	2L_5487205_SNP [dm3] 2L_5487205_SNP [dm6]	A	T	4.703e^-6	0.854	DOWNSTREAM CR45287 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15662613	X_15662613_SNP [dm3] X_15768580_SNP [dm6]	T	C	5.010e^-6	0.854	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
2L	7577316	2L_7577316_SNP [dm3] 2L_7577316_SNP [dm6]	A	C	5.517e^-6	0.862	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	5124578	2R_5124578_SNP [dm3] 2R_9237073_SNP [dm6]	T	C	6.054e^-6	0.873	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
2R	14551574	2R_14551574_SNP [dm3] 2R_18664069_SNP [dm6]	G	A	7.172e^-6	0.898	DOWNSTREAM CG33136 INTERGENIC
2L	13980850	2L_13980850_SNP [dm3] 2L_13980850_SNP [dm6]	C	T	7.181e^-6	0.898	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11437715	2L_11437715_SNP [dm3] 2L_11437715_SNP [dm6]	G	T	1.081e^-5	0.965	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9192710	X_9192710_SNP [dm3] X_9298677_SNP [dm6]	C	T	1.123e^-5	0.965	INTRON lz
2L	8715228	2L_8715228_SNP [dm3] 2L_8715228_SNP [dm6]	G	A	1.146e^-5	0.965	UPSTREAM raw INTRON raw
X	17188646	X_17188646_SNP [dm3] X_17294613_SNP [dm6]	G	C	1.264e^-5	0.965	INTRON CG5445 & 1 other
2L	9211198	2L_9211198_SNP [dm3] 2L_9211198_SNP [dm6]	C	A	1.272e^-5	0.965	INTRON tai
X	15664335	X_15664335_SNP [dm3] X_15770302_SNP [dm6]	C	T	1.327e^-5	0.965	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
2R	14657123	2R_14657123_SNP [dm3] 2R_18769618_SNP [dm6]	G	A	1.352e^-5	0.965	UPSTREAM tRNA:CR30229 INTRON Mctp
2L	9211193	2L_9211193_SNP [dm3] 2L_9211193_SNP [dm6]	C	T	1.392e^-5	0.965	INTRON tai
X	3643326	X_3643326_SNP [dm3] X_3749293_SNP [dm6]	T	A	1.505e^-5	0.965	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7586079	2L_7586079_SNP [dm3] 2L_7586079_SNP [dm6]	A	T	1.565e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11437943	2L_11437943_SNP [dm3] 2L_11437943_SNP [dm6]	A	T	1.567e^-5	0.965	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15664183	X_15664183_SNP [dm3] X_15770150_SNP [dm6]	C	G	1.836e^-5	0.965	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	7592090	3L_7592090_SNP [dm3] 3L_7598990_SNP [dm6]	G	A	1.842e^-5	0.965	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14551634	2R_14551634_SNP [dm3] 2R_18664129_SNP [dm6]	T	C	1.878e^-5	0.965	DOWNSTREAM CG33136 INTERGENIC
2L	11438123	2L_11438123_SNP [dm3] 2L_11438123_SNP [dm6]	T	A	1.943e^-5	0.965	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24250778	3L_24250778_SNP [dm3] 3L_24257678_SNP [dm6]	A	C	2.007e^-5	0.965	INTRON Snap25
2R	14716311	2R_14716311_SNP [dm3] 2R_18828806_SNP [dm6]	G	A	2.093e^-5	0.965	INTRON CG15097
2L	16301473	2L_16301473_SNP [dm3] 2L_16301473_SNP [dm6]	A	C	2.119e^-5	0.965	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
X	17168458	X_17168458_SNP [dm3] X_17274425_SNP [dm6]	C	T	2.192e^-5	0.965	INTRON f
2R	5122461	2R_5122461_SNP [dm3] 2R_9234956_SNP [dm6]	T	C	2.211e^-5	0.965	SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1190362	2L_1190362_SNP [dm3] 2L_1190362_SNP [dm6]	C	G	2.240e^-5	0.965	INTRON CG5001
X	18504788	X_18504788_SNP [dm3] X_18610755_SNP [dm6]	T	A	2.292e^-5	0.965	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2706087	X_2706087_SNP [dm3] X_2812054_SNP [dm6]	A	C	2.334e^-5	0.965	INTRON kirre
3R	26684507	3R_26684507_SNP [dm3] 3R_30858785_SNP [dm6]	A	T	2.408e^-5	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8868602	3L_8868602_SNP [dm3] 3L_8875502_SNP [dm6]	G	A	2.426e^-5	0.965	INTRON dally
3R	24056534	3R_24056534_INS [dm3] 3R_28230812_INS [dm6]	A	AA	2.459e^-5	0.965	INTRON CG34354
3R	22319071	3R_22319071_SNP [dm3] 3R_26493349_SNP [dm6]	G	C	2.521e^-5	0.965	INTRON plum
X	20322647	X_20322647_SNP [dm3] X_20451620_SNP [dm6]	A	G	2.521e^-5	0.965	INTRON CG32506
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	2.535e^-5	0.965	DOWNSTREAM Mks1 INTERGENIC
3L	4099518	3L_4099518_SNP [dm3] 3L_4099518_SNP [dm6]	T	G	2.552e^-5	0.965	INTRON CG14995	TF binding site mE1_TFBS_inv
X	15312360	X_15312360_SNP [dm3] X_15418327_SNP [dm6]	A	T	2.601e^-5	0.965	INTRON Cngl
2R	15096125	2R_15096125_SNP [dm3] 2R_19208620_SNP [dm6]	T	G	2.637e^-5	0.965	INTRON hppy
3R	15072411	3R_15072411_SNP [dm3] 3R_19246689_SNP [dm6]	A	C	2.661e^-5	0.965	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4978420	2L_4978420_SNP [dm3] 2L_4978420_SNP [dm6]	C	T	2.994e^-5	0.965	UTR_3_PRIME CG3792 DOWNSTREAM CG8891
3R	20329263	3R_20329263_SNP [dm3] 3R_24503541_SNP [dm6]	A	G	3.121e^-5	0.965	INTERGENIC
2R	13212976	2R_13212976_SNP [dm3] 2R_17325471_SNP [dm6]	C	A	3.136e^-5	0.965	INTRON mbl
3L	21320502	3L_21320502_SNP [dm3] 3L_21327402_SNP [dm6]	G	C	3.157e^-5	0.965	INTRON Rab26
2R	11599314	2R_11599314_SNP [dm3] 2R_15711809_SNP [dm6]	T	C	3.163e^-5	0.965	SYNONYMOUS_CODING CG30083
X	8900611	X_8900611_SNP [dm3] X_9006578_SNP [dm6]	A	G	3.227e^-5	0.965	INTRON rdgA & 1 other
X	14319613	X_14319613_SNP [dm3] X_14425580_SNP [dm6]	G	T	3.227e^-5	0.965	INTRON dpr8
3R	24554191	3R_24554191_SNP [dm3] 3R_28728469_SNP [dm6]	T	C	3.378e^-5	0.965	INTRON htt
3L	10757736	3L_10757736_SNP [dm3] 3L_10764636_SNP [dm6]	C	T	3.416e^-5	0.965	INTERGENIC
2R	10344130	2R_10344130_SNP [dm3] 2R_14456625_SNP [dm6]	T	A	3.458e^-5	0.965	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27132105	3R_27132105_SNP [dm3] 3R_31306383_SNP [dm6]	C	A	3.460e^-5	0.965	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1269354	3L_1269354_SNP [dm3] 3L_1269354_SNP [dm6]	A	G	3.621e^-5	0.965	INTRON CG9134
2L	5624176	2L_5624176_SNP [dm3] 2L_5624176_SNP [dm6]	C	G	3.627e^-5	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16023839	2R_16023839_SNP [dm3] 2R_20136334_SNP [dm6]	A	G	3.666e^-5	0.965	DOWNSTREAM CR44634 INTERGENIC
3L	2645219	3L_2645219_SNP [dm3] 3L_2645219_SNP [dm6]	T	C	3.779e^-5	0.965	UPSTREAM CG1143 INTERGENIC
3R	17911870	3R_17911870_SNP [dm3] 3R_22086148_SNP [dm6]	T	A	3.785e^-5	0.965	UPSTREAM CG5791 INTRON CG5778
2L	4889681	2L_4889681_SNP [dm3] 2L_4889681_SNP [dm6]	A	C	3.853e^-5	0.965	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20500322	3R_20500322_SNP [dm3] 3R_24674600_SNP [dm6]	G	A	3.903e^-5	0.965	INTRON slo
2R	14551635	2R_14551635_SNP [dm3] 2R_18664130_SNP [dm6]	A	T	3.905e^-5	0.965	DOWNSTREAM CG33136 INTERGENIC
2L	5602373	2L_5602373_SNP [dm3] 2L_5602373_SNP [dm6]	G	T	3.952e^-5	0.965	UTR_3_PRIME CG14010 DOWNSTREAM CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9855682	3L_9855682_SNP [dm3] 3L_9862582_SNP [dm6]	A	G	3.986e^-5	0.965	SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
3R	27690772	3R_27690772_INS [dm3] 3R_31865050_INS [dm6]	A	ACTTATTTATTGCA...	4.037e^-5	0.965	INTRON heph
3L	12418787	3L_12418787_SNP [dm3] 3L_12425687_SNP [dm6]	C	T	4.118e^-5	0.965	INTRON toe
X	5609233	X_5609233_SNP [dm3] X_5715200_SNP [dm6]	A	T	4.141e^-5	0.965	NON_SYNONYMOUS_CODING CG33080 INTRON CG33080
2L	7573961	2L_7573961_SNP [dm3] 2L_7573961_SNP [dm6]	C	G	4.187e^-5	0.965	INTRON RapGAP1
3R	24503550	3R_24503550_SNP [dm3] 3R_28677828_SNP [dm6]	T	C	4.228e^-5	0.965	INTRON CG9990
3R	22318859	3R_22318859_SNP [dm3] 3R_26493137_SNP [dm6]	A	T	4.343e^-5	0.965	INTRON plum
3R	10625886	3R_10625886_SNP [dm3] 3R_14800164_SNP [dm6]	T	A	4.348e^-5	0.965	NON_SYNONYMOUS_CODING CG14856
3R	27698920	3R_27698920_SNP [dm3] 3R_31873198_SNP [dm6]	G	C	4.443e^-5	0.965	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7217926	2L_7217926_SNP [dm3] 2L_7217926_SNP [dm6]	G	T	4.483e^-5	0.965	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	21253596	X_21253596_SNP [dm3] X_21382569_SNP [dm6]	C	T	4.501e^-5	0.965	SYNONYMOUS_CODING slgA UTR_5_PRIME slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27697847	3R_27697847_SNP [dm3] 3R_31872125_SNP [dm6]	T	C	4.520e^-5	0.965	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12904222	2L_12904222_SNP [dm3] 2L_12904222_SNP [dm6]	C	G	4.526e^-5	0.965	INTERGENIC
2L	19439236	2L_19439236_SNP [dm3] 2L_19439236_SNP [dm6]	T	C	4.530e^-5	0.965	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16749911	X_16749911_SNP [dm3] X_16855878_SNP [dm6]	C	A	4.535e^-5	0.965	INTRON CG13003
2L	4925924	2L_4925924_SNP [dm3] 2L_4925924_SNP [dm6]	C	T	4.594e^-5	0.965	UTR_5_PRIME hoe1 INTRON hoe1
3R	7127563	3R_7127563_SNP [dm3] 3R_11301841_SNP [dm6]	A	T	4.612e^-5	0.965	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
2R	6148249	2R_6148249_SNP [dm3] 2R_10260744_SNP [dm6]	T	C	4.656e^-5	0.965	DOWNSTREAM CR30009 INTRON CG12911
3R	17339970	3R_17339970_SNP [dm3] 3R_21514248_SNP [dm6]	C	T	4.863e^-5	0.965	INTERGENIC
3L	3407194	3L_3407194_SNP [dm3] 3L_3407194_SNP [dm6]	G	A	4.891e^-5	0.965	INTRON sty
X	1563313	X_1563313_SNP [dm3] X_1669280_SNP [dm6]	G	A	4.912e^-5	0.965	UTR_5_PRIME CG3740 UPSTREAM hfw & 1 other DOWNSTREAM dor	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2584390	3L_2584390_SNP [dm3] 3L_2584390_SNP [dm6]	C	T	4.960e^-5	0.965	INTRON msn	TF binding site BDTNP1_TFBS_dl
2R	19286415	2R_19286415_SNP [dm3] 2R_23398892_SNP [dm6]	A	G	4.977e^-5	0.965	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17168336	X_17168336_SNP [dm3] X_17274303_SNP [dm6]	G	A	5.072e^-5	0.965	INTRON f
3L	6683442	3L_6683442_INS [dm3] 3L_6690342_INS [dm6]	A	AAAAG	5.109e^-5	0.965	INTRON SP1173
3L	6683465	3L_6683465_SNP [dm3] 3L_6690365_SNP [dm6]	A	G	5.109e^-5	0.965	INTRON SP1173
3L	6683467	3L_6683467_INS [dm3] 3L_6690367_INS [dm6]	A	AGG	5.109e^-5	0.965	INTRON SP1173
2R	14551525	2R_14551525_DEL [dm3] 2R_18664020_DEL [dm6]	AT	A	5.118e^-5	0.965	DOWNSTREAM CG33136 INTERGENIC
2R	10344490	2R_10344490_INS [dm3] 2R_14456985_INS [dm6]	G	GAGTG	5.177e^-5	0.965	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3R	22321667	3R_22321667_SNP [dm3] 3R_26495945_SNP [dm6]	G	T	5.192e^-5	0.965	INTRON plum
3R	24503689	3R_24503689_SNP [dm3] 3R_28677967_SNP [dm6]	C	T	5.215e^-5	0.965	INTRON CG9990
3L	9353910	3L_9353910_SNP [dm3] 3L_9360810_SNP [dm6]	G	A	5.221e^-5	0.965	DOWNSTREAM CG32039 INTRON CG34455	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24656833	3R_24656833_SNP [dm3] 3R_28831111_SNP [dm6]	G	A	5.243e^-5	0.965	UTR_5_PRIME WASp INTRON WASp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	11048760	3L_11048760_SNP [dm3] 3L_11055660_SNP [dm6]	C	T	5.378e^-5	0.965	START_GAINED CG7888 UTR_5_PRIME CG7888 INTRON CG7888
X	21253568	X_21253568_SNP [dm3] X_21382541_SNP [dm6]	C	G	5.430e^-5	0.965	SPLICE_SITE_REGION slgA INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17168741	X_17168741_SNP [dm3] X_17274708_SNP [dm6]	G	A	5.499e^-5	0.965	UPSTREAM f INTRON f
3R	27696209	3R_27696209_SNP [dm3] 3R_31870487_SNP [dm6]	A	G	5.506e^-5	0.965	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6683430	3L_6683430_SNP [dm3] 3L_6690330_SNP [dm6]	G	A	5.542e^-5	0.965	INTRON SP1173
2R	11766205	2R_11766205_SNP [dm3] 2R_15878700_SNP [dm6]	A	G	5.626e^-5	0.965	INTRON sli
X	1557057	X_1557057_DEL [dm3] X_1663024_DEL [dm6]	TTCGACACC	T	5.674e^-5	0.965	UTR_3_PRIME br INTRON Mur2B
3R	9267296	3R_9267296_DEL [dm3] 3R_13441574_DEL [dm6]	CACCATACCTTCACCTACAT...	C	5.766e^-5	0.965	INTERGENIC
2R	17268954	2R_17268954_SNP [dm3] 2R_21381449_SNP [dm6]	C	T	5.776e^-5	0.965	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv
2R	11604754	2R_11604754_SNP [dm3] 2R_15717249_SNP [dm6]	G	A	5.897e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7201550	3L_7201550_SNP [dm3] 3L_7208450_SNP [dm6]	C	G	5.977e^-5	0.965	INTERGENIC
3R	22321558	3R_22321558_SNP [dm3] 3R_26495836_SNP [dm6]	A	T	5.988e^-5	0.965	INTRON plum
2R	4515753	2R_4515753_SNP [dm3] 2R_8628248_SNP [dm6]	C	G	6.176e^-5	0.965	SYNONYMOUS_CODING CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1212384	3L_1212384_SNP [dm3] 3L_1212384_SNP [dm6]	A	T	6.206e^-5	0.965	UPSTREAM LysE INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15231407	2R_15231407_SNP [dm3] 2R_19343902_SNP [dm6]	G	A	6.250e^-5	0.965	SYNONYMOUS_CODING CG9975 INTRON Rgk1	TF binding site mE1_TFBS_chinmo
X	17168340	X_17168340_SNP [dm3] X_17274307_SNP [dm6]	T	G	6.315e^-5	0.965	INTRON f
X	21251248	X_21251248_SNP [dm3] X_21380221_SNP [dm6]	C	T	6.370e^-5	0.965	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8878418	2R_8878418_SNP [dm3] 2R_12990913_SNP [dm6]	G	A	6.437e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	16301560	2L_16301560_SNP [dm3] 2L_16301560_SNP [dm6]	A	G	6.561e^-5	0.965	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
3R	25293145	3R_25293145_DEL [dm3] 3R_29467423_DEL [dm6]	ACA	A	6.619e^-5	0.965	INTRON Ptp99A
3L	1125144	3L_1125144_DEL [dm3] 3L_1125144_DEL [dm6]	TCC	A	6.680e^-5	0.965	INTERGENIC	regulatory region REDfly_CRMs
3R	26770283	3R_26770283_DEL [dm3] 3R_30944561_DEL [dm6]	AGTCGGGAA	A	7.006e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11601144	2R_11601144_SNP [dm3] 2R_15713639_SNP [dm6]	A	C	7.039e^-5	0.965	UPSTREAM CG30083 INTERGENIC
2R	16806839	2R_16806839_SNP [dm3] 2R_20919334_SNP [dm6]	G	C	7.066e^-5	0.965	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12883463	X_12883463_SNP [dm3] X_12989430_SNP [dm6]	C	T	7.108e^-5	0.965	INTRON rad
2R	10344219	2R_10344219_INS [dm3] 2R_14456714_INS [dm6]	A	TCTATTCT	7.215e^-5	0.965	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19286412	2R_19286412_SNP [dm3] 2R_23398889_SNP [dm6]	A	G	7.220e^-5	0.965	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3645697	X_3645697_SNP [dm3] X_3751664_SNP [dm6]	T	A	7.299e^-5	0.965	INTRON tlk
X	17168376	X_17168376_SNP [dm3] X_17274343_SNP [dm6]	C	A	7.373e^-5	0.965	INTRON f
3R	26473773	3R_26473773_SNP [dm3] 3R_30648051_SNP [dm6]	T	G	7.482e^-5	0.965	NON_SYNONYMOUS_CODING PH4alphaPV
X	15312359	X_15312359_SNP [dm3] X_15418326_SNP [dm6]	G	C	7.519e^-5	0.965	INTRON Cngl
2R	14658249	2R_14658249_SNP [dm3] 2R_18770744_SNP [dm6]	A	G	7.547e^-5	0.965	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	4185927	3L_4185927_SNP [dm3] 3L_4185927_SNP [dm6]	G	C	7.619e^-5	0.965	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
X	20294877	X_20294877_SNP [dm3] X_20423850_SNP [dm6]	T	A	7.637e^-5	0.965	UTR_5_PRIME Pp4-19C UPSTREAM Pp4-19C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10344217	2R_10344217_SNP [dm3] 2R_14456712_SNP [dm6]	C	T	7.704e^-5	0.965	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19597438	3R_19597438_SNP [dm3] 3R_23771716_SNP [dm6]	G	A	7.752e^-5	0.965	SYNONYMOUS_CODING tst
2R	14292604	2R_14292604_SNP [dm3] 2R_18405099_SNP [dm6]	C	G	7.860e^-5	0.965	NON_SYNONYMOUS_CODING GstE5 UPSTREAM GstE6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20294159	X_20294159_SNP [dm3] X_20423132_SNP [dm6]	C	T	7.880e^-5	0.965	UPSTREAM Pp4-19C & 1 other INTRON Pp4-19C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9357798	3L_9357798_SNP [dm3] 3L_9364698_SNP [dm6]	T	C	7.957e^-5	0.965	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1563586	X_1563586_SNP [dm3] X_1669553_SNP [dm6]	T	C	7.993e^-5	0.965	UPSTREAM hfw & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27691088	3R_27691088_DEL [dm3] 3R_31865366_DEL [dm6]	TGACAAT	T	8.018e^-5	0.965	INTRON heph
3L	9855169	3L_9855169_SNP [dm3] 3L_9862069_SNP [dm6]	C	T	8.052e^-5	0.965	INTRON iPLA2-VIA	TF binding site mE1_TFBS_sens
X	15312331	X_15312331_SNP [dm3] X_15418298_SNP [dm6]	T	G	8.059e^-5	0.965	INTRON Cngl
2L	10708894	2L_10708894_DEL [dm3] 2L_10708894_DEL [dm6]	AT	A	8.143e^-5	0.965	UTR_5_PRIME Lip2
2R	6148258	2R_6148258_SNP [dm3] 2R_10260753_SNP [dm6]	A	G	8.263e^-5	0.965	DOWNSTREAM CR30009 INTRON CG12911
2L	4788178	2L_4788178_SNP [dm3] 2L_4788178_SNP [dm6]	C	A	8.296e^-5	0.965	INTRON CG15630
X	7319307	X_7319307_SNP [dm3] X_7425274_SNP [dm6]	A	G	8.392e^-5	0.965	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2R	19286495	2R_19286495_SNP [dm3] 2R_23398972_SNP [dm6]	T	A	8.405e^-5	0.965	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6683459	3L_6683459_SNP [dm3] 3L_6690359_SNP [dm6]	T	G	8.415e^-5	0.965	INTRON SP1173
2L	7580163	2L_7580163_SNP [dm3] 2L_7580163_SNP [dm6]	A	G	8.433e^-5	0.965	INTERGENIC
3L	8690511	3L_8690511_SNP [dm3] 3L_8697411_SNP [dm6]	T	C	8.462e^-5	0.965	INTERGENIC
X	3643817	X_3643817_SNP [dm3] X_3749784_SNP [dm6]	C	A	8.495e^-5	0.965	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19410884	3R_19410884_SNP [dm3] 3R_23585162_SNP [dm6]	A	C	8.506e^-5	0.965	INTERGENIC
3R	20122258	3R_20122258_SNP [dm3] 3R_24296536_SNP [dm6]	G	T	8.597e^-5	0.965	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21334848	3R_21334848_SNP [dm3] 3R_25509126_SNP [dm6]	C	G	8.617e^-5	0.965	DOWNSTREAM CG5111 INTERGENIC
2L	12904216	2L_12904216_SNP [dm3] 2L_12904216_SNP [dm6]	C	T	8.621e^-5	0.965	INTERGENIC
3L	8593124	3L_8593124_SNP [dm3] 3L_8600024_SNP [dm6]	T	C	8.680e^-5	0.965	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3R	19595274	3R_19595274_SNP [dm3] 3R_23769552_SNP [dm6]	T	C	8.709e^-5	0.965	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
3L	6683449	3L_6683449_SNP [dm3] 3L_6690349_SNP [dm6]	T	A	8.732e^-5	0.965	INTRON SP1173
X	17168403	X_17168403_SNP [dm3] X_17274370_SNP [dm6]	A	G	8.744e^-5	0.965	INTRON f
2R	6148264	2R_6148264_SNP [dm3] 2R_10260759_SNP [dm6]	A	T	8.813e^-5	0.965	DOWNSTREAM CR30009 INTRON CG12911
2R	13213177	2R_13213177_DEL [dm3] 2R_17325672_DEL [dm6]	TGTCTCACTCT...	T	8.842e^-5	0.965	INTRON mbl
3L	777397	3L_777397_SNP [dm3] 3L_777397_SNP [dm6]	G	A	8.865e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16006714	X_16006714_DEL [dm3] X_16112681_DEL [dm6]	GTCCAGCGTG	G	8.868e^-5	0.965	INTERGENIC
2L	7574339	2L_7574339_SNP [dm3] 2L_7574339_SNP [dm6]	A	G	8.944e^-5	0.965	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2R	8994500	2R_8994500_SNP [dm3] 2R_13106995_SNP [dm6]	T	C	9.008e^-5	0.965	INTERGENIC
2R	10026497	2R_10026497_SNP [dm3] 2R_14138992_SNP [dm6]	G	A	9.010e^-5	0.965	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7580166	2L_7580166_SNP [dm3] 2L_7580166_SNP [dm6]	G	A	9.018e^-5	0.965	INTERGENIC
X	21253559	X_21253559_SNP [dm3] X_21382532_SNP [dm6]	T	C	9.018e^-5	0.965	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3794274	3L_3794274_DEL [dm3] 3L_3794274_DEL [dm6]	AGACAAGCA	A	9.019e^-5	0.965	INTRON CG32264
3L	15190257	3L_15190257_SNP [dm3] 3L_15197157_SNP [dm6]	A	T	9.174e^-5	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15867900	3R_15867900_SNP [dm3] 3R_20042178_SNP [dm6]	G	A	9.189e^-5	0.965	UPSTREAM Indy-2 & 1 other INTRON CG17193
3L	3739770	3L_3739770_SNP [dm3] 3L_3739770_SNP [dm6]	A	T	9.229e^-5	0.965	INTRON CG32264
X	12993729	X_12993729_SNP [dm3] X_13099696_SNP [dm6]	T	A	9.337e^-5	0.965	INTRON CG43313
3L	6683445	3L_6683445_SNP [dm3] 3L_6690345_SNP [dm6]	T	A	9.403e^-5	0.965	INTRON SP1173
3L	6683446	3L_6683446_SNP [dm3] 3L_6690346_SNP [dm6]	T	A	9.403e^-5	0.965	INTRON SP1173
3L	6683451	3L_6683451_SNP [dm3] 3L_6690351_SNP [dm6]	C	T	9.403e^-5	0.965	INTRON SP1173
3L	6683462	3L_6683462_INS [dm3] 3L_6690362_INS [dm6]	T	TG	9.403e^-5	0.965	INTRON SP1173
2R	11679914	2R_11679914_SNP [dm3] 2R_15792409_SNP [dm6]	A	T	9.487e^-5	0.965	INTRON Zasp52
3R	17828427	3R_17828427_SNP [dm3] 3R_22002705_SNP [dm6]	T	G	9.497e^-5	0.965	INTRON Eip93F
3R	10625885	3R_10625885_SNP [dm3] 3R_14800163_SNP [dm6]	A	C	9.502e^-5	0.965	SYNONYMOUS_CODING CG14856
X	5333736	X_5333736_SNP [dm3] X_5439703_SNP [dm6]	G	T	9.507e^-5	0.965	INTERGENIC
2R	15390377	2R_15390377_SNP [dm3] 2R_19502872_SNP [dm6]	C	A	9.552e^-5	0.965	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	19286476	2R_19286476_SNP [dm3] 2R_23398953_SNP [dm6]	A	G	9.585e^-5	0.965	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3739763	3L_3739763_SNP [dm3] 3L_3739763_SNP [dm6]	C	T	9.703e^-5	0.965	INTRON CG32264
3R	10087656	3R_10087656_SNP [dm3] 3R_14261934_SNP [dm6]	C	T	9.755e^-5	0.965	SYNONYMOUS_CODING CG14841 UPSTREAM CG14840 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12993732	X_12993732_SNP [dm3] X_13099699_SNP [dm6]	A	G	9.804e^-5	0.965	INTRON CG43313
2L	7604463	2L_7604463_SNP [dm3] 2L_7604463_SNP [dm6]	C	T	9.811e^-5	0.965	EXON CR45370
3R	4703452	3R_4703452_SNP [dm3] 3R_8877730_SNP [dm6]	G	A	9.838e^-5	0.965	INTRON pyd
2L	4786993	2L_4786993_SNP [dm3] 2L_4786993_SNP [dm6]	G	A	9.901e^-5	0.965	INTRON CG15630
2R	10983062	2R_10983062_SNP [dm3] 2R_15095557_SNP [dm6]	C	A	9.919e^-5	0.965	INTERGENIC
3R	9220170	3R_9220170_SNP [dm3] 3R_13394448_SNP [dm6]	T	G	9.973e^-5	0.965	INTRON CCHa2
3R	20322568	3R_20322568_SNP [dm3] 3R_24496846_SNP [dm6]	A	G	1.004e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9388336	2L_9388336_SNP [dm3] 2L_9388336_SNP [dm6]	T	C	1.016e^-4	0.965	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344057	2R_10344057_DEL [dm3] 2R_14456552_DEL [dm6]	TG	A	1.017e^-4	0.965	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20291801	X_20291801_SNP [dm3] X_20420774_SNP [dm6]	T	C	1.022e^-4	0.965	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8618692	3R_8618692_SNP [dm3] 3R_12792970_SNP [dm6]	T	C	1.024e^-4	0.965	INTERGENIC
X	20294738	X_20294738_SNP [dm3] X_20423711_SNP [dm6]	G	C	1.027e^-4	0.965	START_GAINED Pp4-19C UTR_5_PRIME Pp4-19C UPSTREAM Pp4-19C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	21251244	X_21251244_SNP [dm3] X_21380217_SNP [dm6]	A	G	1.029e^-4	0.965	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7578872	2L_7578872_SNP [dm3] 2L_7578872_SNP [dm6]	A	T	1.054e^-4	0.977	UTR_5_PRIME RapGAP1
2L	4786994	2L_4786994_SNP [dm3] 2L_4786994_SNP [dm6]	A	T	1.056e^-4	0.977	INTRON CG15630
2L	1239703	2L_1239703_SNP [dm3] 2L_1239703_SNP [dm6]	C	G	1.072e^-4	0.977	UPSTREAM CG5397 INTERGENIC
2L	5602381	2L_5602381_SNP [dm3] 2L_5602381_SNP [dm6]	A	T	1.073e^-4	0.977	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7569557	2L_7569557_SNP [dm3] 2L_7569557_SNP [dm6]	C	T	1.074e^-4	0.977	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11072516	2L_11072516_SNP [dm3] 2L_11072516_SNP [dm6]	G	A	1.080e^-4	0.977	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15841969	2R_15841969_SNP [dm3] 2R_19954464_SNP [dm6]	G	A	1.091e^-4	0.977	UTR_3_PRIME CG44622
2R	16023866	2R_16023866_DEL [dm3] 2R_20136361_DEL [dm6]	TCTTATTTCAATTT...	T	1.092e^-4	0.977	UPSTREAM CR44635 DOWNSTREAM CR44634 INTERGENIC
3R	23425812	3R_23425812_SNP [dm3] 3R_27600090_SNP [dm6]	T	C	1.094e^-4	0.977	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
3R	20122273	3R_20122273_SNP [dm3] 3R_24296551_SNP [dm6]	C	A	1.094e^-4	0.977	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13890198	3R_13890198_SNP [dm3] 3R_18064476_SNP [dm6]	T	A	1.101e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20122301	3R_20122301_SNP [dm3] 3R_24296579_SNP [dm6]	A	T	1.105e^-4	0.978	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9211430	2L_9211430_SNP [dm3] 2L_9211430_SNP [dm6]	C	G	1.117e^-4	0.981	INTRON tai
2L	7574357	2L_7574357_SNP [dm3] 2L_7574357_SNP [dm6]	A	T	1.119e^-4	0.981	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2R	14551581	2R_14551581_INS [dm3] 2R_18664076_INS [dm6]	T	TTT	1.128e^-4	0.981	DOWNSTREAM CG33136 INTERGENIC
X	1563442	X_1563442_SNP [dm3] X_1669409_SNP [dm6]	G	A	1.133e^-4	0.981	UPSTREAM hfw & 2 others DOWNSTREAM dor INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10026377	2R_10026377_SNP [dm3] 2R_14138872_SNP [dm6]	G	A	1.134e^-4	0.981	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7312596	3L_7312596_SNP [dm3] 3L_7319496_SNP [dm6]	T	G	1.141e^-4	0.981	UPSTREAM CG8607 INTERGENIC
2L	5623671	2L_5623671_SNP [dm3] 2L_5623671_SNP [dm6]	T	C	1.145e^-4	0.981	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
X	5406117	X_5406117_DEL [dm3] X_5512084_DEL [dm6]	AGTGTAACCCCGGAATTGG...	A	1.165e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8184260	X_8184260_SNP [dm3] X_8290227_SNP [dm6]	G	C	1.172e^-4	0.987	INTRON nAChRalpha3
3L	12418859	3L_12418859_SNP [dm3] 3L_12425759_SNP [dm6]	G	A	1.179e^-4	0.987	INTRON toe
3L	14497374	3L_14497374_SNP [dm3] 3L_14504274_SNP [dm6]	C	G	1.185e^-4	0.987	INTRON bbg	transposable element FlyBase
3L	3739732	3L_3739732_SNP [dm3] 3L_3739732_SNP [dm6]	G	A	1.194e^-4	0.987	INTRON CG32264
3L	5303144	3L_5303144_SNP [dm3] 3L_5310044_SNP [dm6]	G	A	1.197e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	1.220e^-4	0.987	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	2645122	3L_2645122_SNP [dm3] 3L_2645122_SNP [dm6]	G	A	1.222e^-4	0.987	UPSTREAM CG1143 INTERGENIC
X	21253977	X_21253977_SNP [dm3] X_21382950_SNP [dm6]	T	C	1.228e^-4	0.987	SYNONYMOUS_CODING slgA	TF binding site BDTNP1_TFBS_da
X	13135909	X_13135909_INS [dm3] X_13241876_INS [dm6]	C	CTT	1.228e^-4	0.987	INTRON mew
2L	4590653	2L_4590653_SNP [dm3] 2L_4590653_SNP [dm6]	A	C	1.231e^-4	0.987	INTRON dp
2R	19240787	2R_19240787_SNP [dm3] 2R_23353264_SNP [dm6]	A	T	1.232e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13901377	3L_13901377_SNP [dm3] 3L_13908277_SNP [dm6]	G	A	1.233e^-4	0.987	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_sens
3L	14050858	3L_14050858_SNP [dm3] 3L_14057758_SNP [dm6]	T	C	1.236e^-4	0.987	INTRON CG32138
3R	24503919	3R_24503919_SNP [dm3] 3R_28678197_SNP [dm6]	T	G	1.273e^-4	0.987	INTRON CG9990
X	3229215	X_3229215_SNP [dm3] X_3335182_SNP [dm6]	G	T	1.275e^-4	0.987	INTRON CR44886 & 1 other
X	19361227	X_19361227_SNP [dm3] X_19467194_SNP [dm6]	T	C	1.277e^-4	0.987	INTRON kek5
2R	1409254	2R_1409254_SNP [dm3] 2R_5521749_SNP [dm6]	T	G	1.281e^-4	0.987	INTRON CG30438
X	1411498	X_1411498_SNP [dm3] X_1517465_SNP [dm6]	T	A	1.281e^-4	0.987	UTR_3_PRIME inc DOWNSTREAM inc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3645153	X_3645153_SNP [dm3] X_3751120_SNP [dm6]	G	A	1.281e^-4	0.987	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7592377	3L_7592377_DEL [dm3] 3L_7599277_DEL [dm6]	AA	A	1.290e^-4	0.987	INTRON CG33275	TF binding site mE1_TFBS_inv
2L	5602395	2L_5602395_SNP [dm3] 2L_5602395_SNP [dm6]	C	T	1.292e^-4	0.987	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5138739	2L_5138739_SNP [dm3] 2L_5138739_SNP [dm6]	A	G	1.293e^-4	0.987	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	16023769	2R_16023769_SNP [dm3] 2R_20136264_SNP [dm6]	C	T	1.303e^-4	0.987	DOWNSTREAM CR44634 INTERGENIC
X	18797555	X_18797555_SNP [dm3] X_18903522_SNP [dm6]	T	G	1.310e^-4	0.987	INTRON CG7378
2R	16377808	2R_16377808_SNP [dm3] 2R_20490303_SNP [dm6]	T	A	1.314e^-4	0.987	DOWNSTREAM CR44643 INTERGENIC
3L	2002914	3L_2002914_SNP [dm3] 3L_2002914_SNP [dm6]	A	T	1.315e^-4	0.987	DOWNSTREAM CG42841 INTERGENIC
2L	20076184	2L_20076184_SNP [dm3] 2L_20076184_SNP [dm6]	G	A	1.315e^-4	0.987	NON_SYNONYMOUS_CODING neb UPSTREAM pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10344355	2R_10344355_SNP [dm3] 2R_14456850_SNP [dm6]	G	A	1.323e^-4	0.987	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
2R	18239738	2R_18239738_SNP [dm3] 2R_22352233_SNP [dm6]	G	A	1.324e^-4	0.987	INTRON Liprin-gamma
2R	6042760	2R_6042760_SNP [dm3] 2R_10155255_SNP [dm6]	C	T	1.325e^-4	0.987	UPSTREAM KCNQ DOWNSTREAM CR45133 & 1 other INTRON KCNQ
3L	10456181	3L_10456181_SNP [dm3] 3L_10463081_SNP [dm6]	C	T	1.326e^-4	0.987	UTR_5_PRIME Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	19931247	2L_19931247_SNP [dm3] 2L_19931247_SNP [dm6]	T	C	1.330e^-4	0.987	INTRON sick
3L	3739623	3L_3739623_SNP [dm3] 3L_3739623_SNP [dm6]	A	T	1.340e^-4	0.987	INTRON CG32264
2R	6148251	2R_6148251_SNP [dm3] 2R_10260746_SNP [dm6]	T	C	1.342e^-4	0.987	DOWNSTREAM CR30009 INTRON CG12911
2L	14527091	2L_14527091_SNP [dm3] 2L_14527091_SNP [dm6]	A	T	1.342e^-4	0.987	INTERGENIC
3R	24477797	3R_24477797_SNP [dm3] 3R_28652075_SNP [dm6]	A	G	1.362e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2002889	3L_2002889_SNP [dm3] 3L_2002889_SNP [dm6]	C	T	1.366e^-4	0.993	DOWNSTREAM CG42841 INTERGENIC
3R	11240781	3R_11240781_SNP [dm3] 3R_15415059_SNP [dm6]	G	C	1.366e^-4	0.993	UTR_3_PRIME Atx2 INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17563702	2L_17563702_SNP [dm3] 2L_17563702_SNP [dm6]	G	A	1.376e^-4	0.997	INTERGENIC
X	1564053	X_1564053_SNP [dm3] X_1670020_SNP [dm6]	G	C	1.387e^-4	1	UPSTREAM CG3740 INTRON hfw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4828763	2L_4828763_SNP [dm3] 2L_4828763_SNP [dm6]	T	A	1.397e^-4	1	UTR_3_PRIME CG15628 DOWNSTREAM CG2976 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10757740	3L_10757740_INS [dm3] 3L_10764640_INS [dm6]	A	AA	1.408e^-4	1	INTERGENIC
2L	14050948	2L_14050948_SNP [dm3] 2L_14050948_SNP [dm6]	A	G	1.431e^-4	1	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1398521	2L_1398521_SNP [dm3] 2L_1398521_SNP [dm6]	T	A	1.436e^-4	1	INTRON lea
3R	23476329	3R_23476329_SNP [dm3] 3R_27650607_SNP [dm6]	G	A	1.444e^-4	1	DOWNSTREAM tau INTRON tau
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	1.446e^-4	1	UTR_3_PRIME Ndae1 INTRON Ndae1
2R	16023784	2R_16023784_SNP [dm3] 2R_20136279_SNP [dm6]	T	C	1.452e^-4	1	DOWNSTREAM CR44634 INTERGENIC
2R	14658588	2R_14658588_SNP [dm3] 2R_18771083_SNP [dm6]	C	G	1.454e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2L	7574470	2L_7574470_SNP [dm3] 2L_7574470_SNP [dm6]	T	C	1.461e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
3L	9079990	3L_9079990_SNP [dm3] 3L_9086890_SNP [dm6]	G	A	1.463e^-4	1	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
2L	9582870	2L_9582870_SNP [dm3] 2L_9582870_SNP [dm6]	C	G	1.463e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	1.475e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7578211	2L_7578211_SNP [dm3] 2L_7578211_SNP [dm6]	T	A	1.498e^-4	1	INTRON RapGAP1
2L	2755993	2L_2755993_INS [dm3] 2L_2755993_INS [dm6]	T	TCT	1.504e^-4	1	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	2650689	3R_2650689_SNP [dm3] 3R_6824967_SNP [dm6]	C	T	1.504e^-4	1	UTR_3_PRIME Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	16984884	X_16984884_SNP [dm3] X_17090851_SNP [dm6]	T	C	1.513e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6344173	2L_6344173_SNP [dm3] 2L_6344173_SNP [dm6]	C	T	1.519e^-4	1	SYNONYMOUS_CODING Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
3R	10515595	3R_10515595_SNP [dm3] 3R_14689873_SNP [dm6]	A	G	1.520e^-4	1	INTRON Meltrin
2L	7578873	2L_7578873_SNP [dm3] 2L_7578873_SNP [dm6]	T	A	1.522e^-4	1	START_GAINED RapGAP1 UTR_5_PRIME RapGAP1
2R	16288305	2R_16288305_SNP [dm3] 2R_20400800_SNP [dm6]	A	T	1.524e^-4	1	INTERGENIC
2R	17619598	2R_17619598_SNP [dm3] 2R_21732093_SNP [dm6]	A	G	1.530e^-4	1	INTERGENIC
2R	16081318	2R_16081318_SNP [dm3] 2R_20193813_SNP [dm6]	C	T	1.534e^-4	1	INTERGENIC
X	17170067	X_17170067_SNP [dm3] X_17276034_SNP [dm6]	C	T	1.541e^-4	1	INTRON f
2L	4889787	2L_4889787_SNP [dm3] 2L_4889787_SNP [dm6]	T	G	1.545e^-4	1	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1563632	X_1563632_SNP [dm3] X_1669599_SNP [dm6]	T	C	1.549e^-4	1	UTR_5_PRIME hfw UPSTREAM Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
3R	15868150	3R_15868150_SNP [dm3] 3R_20042428_SNP [dm6]	C	T	1.555e^-4	1	UPSTREAM Indy-2 & 1 other INTRON CG17193
3L	24320727	3L_24320727_SNP [dm3] 3L_24327627_SNP [dm6]	C	G	1.567e^-4	1	INTRON nvd
2R	11668811	2R_11668811_SNP [dm3] 2R_15781306_SNP [dm6]	G	A	1.581e^-4	1	INTRON Zasp52
2L	4034201	2L_4034201_SNP [dm3] 2L_4034201_SNP [dm6]	A	T	1.592e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	1.596e^-4	1	UPSTREAM CR44964 INTRON CG14439
3L	7998174	3L_7998174_SNP [dm3] 3L_8005074_SNP [dm6]	G	A	1.619e^-4	1	INTRON nmo
2L	9582887	2L_9582887_SNP [dm3] 2L_9582887_SNP [dm6]	G	A	1.620e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24676921	3R_24676921_SNP [dm3] 3R_28851199_SNP [dm6]	A	T	1.622e^-4	1	INTRON spg
3L	10636238	3L_10636238_SNP [dm3] 3L_10643138_SNP [dm6]	C	T	1.624e^-4	1	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
X	1563515	X_1563515_SNP [dm3] X_1669482_SNP [dm6]	G	T	1.629e^-4	1	UPSTREAM hfw & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7636896	2L_7636896_SNP [dm3] 2L_7636896_SNP [dm6]	G	T	1.631e^-4	1	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14551593	2R_14551593_SNP [dm3] 2R_18664088_SNP [dm6]	G	C	1.636e^-4	1	DOWNSTREAM CG33136 INTERGENIC
3L	17106424	3L_17106424_SNP [dm3] 3L_17113324_SNP [dm6]	A	G	1.637e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_cad
3R	19410469	3R_19410469_SNP [dm3] 3R_23584747_SNP [dm6]	G	A	1.642e^-4	1	INTERGENIC
2R	6719745	2R_6719745_SNP [dm3] 2R_10832240_SNP [dm6]	G	T	1.646e^-4	1	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	17272034	2R_17272034_SNP [dm3] 2R_21384529_SNP [dm6]	G	T	1.647e^-4	1	UPSTREAM CG10795 DOWNSTREAM EfSec INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15390375	2R_15390375_SNP [dm3] 2R_19502870_SNP [dm6]	T	A	1.652e^-4	1	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	11104497	2L_11104497_SNP [dm3] 2L_11104497_SNP [dm6]	T	C	1.653e^-4	1	SYNONYMOUS_CODING Reps
X	1411172	X_1411172_SNP [dm3] X_1517139_SNP [dm6]	A	C	1.654e^-4	1	UTR_3_PRIME inc DOWNSTREAM inc	TF binding site BDTNP1_TFBS_dl
X	4909370	X_4909370_SNP [dm3] X_5015337_SNP [dm6]	C	T	1.654e^-4	1	INTRON CR44833
3R	26975388	3R_26975388_SNP [dm3] 3R_31149666_SNP [dm6]	A	T	1.664e^-4	1	INTRON Gycbeta100B
X	17195562	X_17195562_SNP [dm3] X_17301529_SNP [dm6]	T	A	1.668e^-4	1	UTR_5_PRIME Fim UPSTREAM Fim & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	12902446	3L_12902446_SNP [dm3] 3L_12909346_SNP [dm6]	G	A	1.671e^-4	1	INTERGENIC
2L	11104485	2L_11104485_SNP [dm3] 2L_11104485_SNP [dm6]	T	A	1.672e^-4	1	SYNONYMOUS_CODING Reps
X	16412796	X_16412796_SNP [dm3] X_16518763_SNP [dm6]	T	G	1.677e^-4	1	INTRON para
3R	27099043	3R_27099043_SNP [dm3] 3R_31273321_SNP [dm6]	A	C	1.680e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19410720	3R_19410720_DEL [dm3] 3R_23584998_DEL [dm6]	ACC	A	1.681e^-4	1	INTERGENIC
2L	11246353	2L_11246353_SNP [dm3] 2L_11246353_SNP [dm6]	C	G	1.695e^-4	1	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21242124	2L_21242124_SNP [dm3] 2L_21242124_SNP [dm6]	G	A	1.695e^-4	1	INTRON Hr39	transposable element FlyBase
2R	13213406	2R_13213406_SNP [dm3] 2R_17325901_SNP [dm6]	C	T	1.700e^-4	1	INTRON mbl
2R	14658254	2R_14658254_SNP [dm3] 2R_18770749_SNP [dm6]	A	C	1.702e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3R	10615639	3R_10615639_SNP [dm3] 3R_14789917_SNP [dm6]	A	G	1.718e^-4	1	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15312352	X_15312352_MNP [dm3] X_15418319_MNP [dm6]	GCC	TAG	1.724e^-4	1	INTRON Cngl
3R	9267291	3R_9267291_DEL [dm3] 3R_13441569_DEL [dm6]	CC	C	1.726e^-4	1	INTERGENIC
2L	5138793	2L_5138793_SNP [dm3] 2L_5138793_SNP [dm6]	G	A	1.726e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	18470906	3R_18470906_SNP [dm3] 3R_22645184_SNP [dm6]	C	A	1.732e^-4	1	INTRON CG45058
3R	27087870	3R_27087870_SNP [dm3] 3R_31262148_SNP [dm6]	T	C	1.746e^-4	1	UPSTREAM CG18673 DOWNSTREAM CG18672 INTERGENIC
X	2594736	X_2594736_SNP [dm3] X_2700703_SNP [dm6]	A	G	1.747e^-4	1	UTR_3_PRIME CG2662 DOWNSTREAM Csat
2L	1748915	2L_1748915_SNP [dm3] 2L_1748915_SNP [dm6]	C	T	1.752e^-4	1	INTRON CG17646
2L	2815406	2L_2815406_SNP [dm3] 2L_2815406_SNP [dm6]	A	G	1.754e^-4	1	SYNONYMOUS_CODING CG15400 DOWNSTREAM CG2964 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6389388	2L_6389388_SNP [dm3] 2L_6389388_SNP [dm6]	C	T	1.754e^-4	1	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18538512	2R_18538512_SNP [dm3] 2R_22651007_SNP [dm6]	T	A	1.761e^-4	1	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19080928	3R_19080928_SNP [dm3] 3R_23255206_SNP [dm6]	C	A	1.762e^-4	1	UTR_3_PRIME wda DOWNSTREAM EloA
X	6778195	X_6778195_INS [dm3] X_6884162_INS [dm6]	G	GGCAT	1.776e^-4	1	INTERGENIC
2R	13418292	2R_13418292_SNP [dm3] 2R_17530787_SNP [dm6]	A	G	1.781e^-4	1	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	3641029	X_3641029_SNP [dm3] X_3746996_SNP [dm6]	G	T	1.784e^-4	1	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	22186004	3R_22186004_SNP [dm3] 3R_26360282_SNP [dm6]	A	G	1.792e^-4	1	INTRON CG33970
2R	18535760	2R_18535760_SNP [dm3] 2R_22648255_SNP [dm6]	C	G	1.836e^-4	1	NON_SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3L	961505	3L_961505_DEL [dm3] 3L_961505_DEL [dm6]	GG	A	1.838e^-4	1	INTRON Glut1
2L	6344311	2L_6344311_SNP [dm3] 2L_6344311_SNP [dm6]	G	A	1.838e^-4	1	INTRON Cpr	TF binding site mE1_TFBS_HSA
3R	15867676	3R_15867676_SNP [dm3] 3R_20041954_SNP [dm6]	A	C	1.840e^-4	1	UPSTREAM Indy-2 & 1 other INTRON CG17193
3R	15674885	3R_15674885_SNP [dm3] 3R_19849163_SNP [dm6]	C	T	1.846e^-4	1	INTRON CG4662
X	6643090	X_6643090_INS [dm3] X_6749057_INS [dm6]	A	ACA	1.849e^-4	1	INTRON CG14439
2R	19286331	2R_19286331_SNP [dm3] 2R_23398808_SNP [dm6]	G	A	1.854e^-4	1	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9211429	2L_9211429_SNP [dm3] 2L_9211429_SNP [dm6]	G	A	1.858e^-4	1	INTRON tai
3R	23827138	3R_23827138_SNP [dm3] 3R_28001416_SNP [dm6]	A	C	1.866e^-4	1	INTERGENIC
X	17168329	X_17168329_SNP [dm3] X_17274296_SNP [dm6]	A	G	1.867e^-4	1	INTRON f
X	15664272	X_15664272_SNP [dm3] X_15770239_SNP [dm6]	A	G	1.876e^-4	1	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
3L	16330477	3L_16330477_SNP [dm3] 3L_16337377_SNP [dm6]	C	G	1.880e^-4	1	INTERGENIC
3R	14170883	3R_14170883_DEL [dm3] 3R_18345161_DEL [dm6]	ACAGGCAGAAA...	A	1.888e^-4	1	INTRON CG15803
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	1.892e^-4	1	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	1.892e^-4	1	DOWNSTREAM Mks1 INTERGENIC
3L	16350415	3L_16350415_SNP [dm3] 3L_16357315_SNP [dm6]	C	T	1.923e^-4	1	UPSTREAM CG45057 INTRON CG45057
2L	20070325	2L_20070325_SNP [dm3] 2L_20070325_SNP [dm6]	T	C	1.925e^-4	1	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14531515	2L_14531515_SNP [dm3] 2L_14531515_SNP [dm6]	C	A	1.927e^-4	1	UPSTREAM tRNA:G3:35Bd & 1 other DOWNSTREAM CR44852 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1190369	2L_1190369_SNP [dm3] 2L_1190369_SNP [dm6]	C	A	1.927e^-4	1	INTRON CG5001
X	2793530	X_2793530_DEL [dm3] X_2899497_DEL [dm6]	GA	G	1.935e^-4	1	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2793534	X_2793534_SNP [dm3] X_2899501_SNP [dm6]	A	T	1.935e^-4	1	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2793857	X_2793857_SNP [dm3] X_2899824_SNP [dm6]	T	C	1.935e^-4	1	INTRON kirre
3L	8851550	3L_8851550_SNP [dm3] 3L_8858450_SNP [dm6]	T	C	1.936e^-4	1	INTRON dally
2L	20781380	2L_20781380_SNP [dm3] 2L_20781380_SNP [dm6]	G	A	1.942e^-4	1	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6327668	2L_6327668_SNP [dm3] 2L_6327668_SNP [dm6]	A	G	1.943e^-4	1	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15674823	3R_15674823_SNP [dm3] 3R_19849101_SNP [dm6]	C	A	1.947e^-4	1	INTRON CG4662
2L	13675985	2L_13675985_SNP [dm3] 2L_13675985_SNP [dm6]	A	G	1.948e^-4	1	DOWNSTREAM CG31814 INTERGENIC
2L	4586767	2L_4586767_SNP [dm3] 2L_4586767_SNP [dm6]	A	C	1.949e^-4	1	INTRON dp
2L	4587089	2L_4587089_SNP [dm3] 2L_4587089_SNP [dm6]	T	C	1.949e^-4	1	INTRON dp
2L	4587555	2L_4587555_SNP [dm3] 2L_4587555_SNP [dm6]	C	T	1.949e^-4	1	INTRON dp
3R	3369323	3R_3369323_SNP [dm3] 3R_7543601_SNP [dm6]	G	A	1.957e^-4	1	INTRON alpha-Est2
X	5110920	X_5110920_SNP [dm3] X_5216887_SNP [dm6]	A	G	1.959e^-4	1	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	17769486	3R_17769486_SNP [dm3] 3R_21943764_SNP [dm6]	A	T	1.967e^-4	1	INTERGENIC
X	1561542	X_1561542_SNP [dm3] X_1667509_SNP [dm6]	C	T	1.975e^-4	1	SYNONYMOUS_CODING dor DOWNSTREAM CG3740 INTRON Mur2B	TF binding site mE1_TFBS_sens
3L	743801	3L_743801_SNP [dm3] 3L_743801_SNP [dm6]	C	T	1.986e^-4	1	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076124	2R_17076124_INS [dm3] 2R_21188619_INS [dm6]	T	TTT	1.988e^-4	1	INTRON tud
3R	26471944	3R_26471944_SNP [dm3] 3R_30646222_SNP [dm6]	A	G	1.990e^-4	1	UTR_3_PRIME PH4alphaPV UPSTREAM CG31013
2L	6327626	2L_6327626_SNP [dm3] 2L_6327626_SNP [dm6]	G	A	1.993e^-4	1	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7267560	2L_7267560_INS [dm3] 2L_7267560_INS [dm6]	A	AA	1.994e^-4	1	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10343938	2R_10343938_SNP [dm3] 2R_14456433_SNP [dm6]	G	A	1.999e^-4	1	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2706443	X_2706443_SNP [dm3] X_2812410_SNP [dm6]	A	T	2.006e^-4	1	INTRON kirre
2L	7576913	2L_7576913_SNP [dm3] 2L_7576913_SNP [dm6]	A	C	2.020e^-4	1	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15868277	3R_15868277_SNP [dm3] 3R_20042555_SNP [dm6]	T	G	2.032e^-4	1	UPSTREAM Indy-2 & 1 other INTRON CG17193
3L	15190272	3L_15190272_SNP [dm3] 3L_15197172_SNP [dm6]	G	T	2.034e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17189623	X_17189623_SNP [dm3] X_17295590_SNP [dm6]	A	C	2.050e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	1368203	3L_1368203_SNP [dm3] 3L_1368203_SNP [dm6]	A	G	2.057e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17190799	X_17190799_SNP [dm3] X_17296766_SNP [dm6]	T	C	2.057e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	4949652	2R_4949652_SNP [dm3] 2R_9062147_SNP [dm6]	T	G	2.065e^-4	1	UPSTREAM ana & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	5591136	2L_5591136_SNP [dm3] 2L_5591136_SNP [dm6]	T	A	2.066e^-4	1	INTERGENIC
2L	5602413	2L_5602413_SNP [dm3] 2L_5602413_SNP [dm6]	G	C	2.069e^-4	1	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2513501	X_2513501_SNP [dm3] X_2619468_SNP [dm6]	G	A	2.073e^-4	1	SYNONYMOUS_CODING Tsp3A UPSTREAM Seipin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12608306	2R_12608306_SNP [dm3] 2R_16720801_SNP [dm6]	T	C	2.093e^-4	1	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15072578	3R_15072578_SNP [dm3] 3R_19246856_SNP [dm6]	C	T	2.097e^-4	1	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8994503	2R_8994503_SNP [dm3] 2R_13106998_SNP [dm6]	T	A	2.101e^-4	1	INTERGENIC
3L	11159151	3L_11159151_SNP [dm3] 3L_11166051_SNP [dm6]	T	A	2.104e^-4	1	SYNONYMOUS_CODING Alg10 DOWNSTREAM wls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16763573	X_16763573_SNP [dm3] X_16869540_SNP [dm6]	C	T	2.104e^-4	1	INTRON CG13003
3L	10544560	3L_10544560_SNP [dm3] 3L_10551460_SNP [dm6]	G	T	2.113e^-4	1	INTRON A2bp1
X	6778194	X_6778194_SNP [dm3] X_6884161_SNP [dm6]	G	T	2.125e^-4	1	INTERGENIC
2L	6344139	2L_6344139_SNP [dm3] 2L_6344139_SNP [dm6]	C	T	2.131e^-4	1	INTRON Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
3L	17586151	3L_17586151_SNP [dm3] 3L_17593051_SNP [dm6]	G	T	2.142e^-4	1	INTRON Eip74EF
3R	8637562	3R_8637562_SNP [dm3] 3R_12811840_SNP [dm6]	A	T	2.145e^-4	1	INTRON CG31345	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4117361	2L_4117361_SNP [dm3] 2L_4117361_SNP [dm6]	G	T	2.157e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24617279	3R_24617279_SNP [dm3] 3R_28791557_SNP [dm6]	C	T	2.168e^-4	1	DOWNSTREAM intr INTERGENIC
3L	3472371	3L_3472371_SNP [dm3] 3L_3472371_SNP [dm6]	C	A	2.169e^-4	1	UPSTREAM CG42324 & 1 other INTERGENIC
3R	20122438	3R_20122438_SNP [dm3] 3R_24296716_SNP [dm6]	A	G	2.205e^-4	1	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
X	3643816	X_3643816_SNP [dm3] X_3749783_SNP [dm6]	C	A	2.220e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10559405	3L_10559405_SNP [dm3] 3L_10566305_SNP [dm6]	G	A	2.223e^-4	1	INTRON A2bp1
2R	6116393	2R_6116393_SNP [dm3] 2R_10228888_SNP [dm6]	A	T	2.226e^-4	1	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	3690089	3R_3690089_SNP [dm3] 3R_7864367_SNP [dm6]	C	T	2.226e^-4	1	SYNONYMOUS_CODING CG17816
2R	14657150	2R_14657150_SNP [dm3] 2R_18769645_SNP [dm6]	C	T	2.228e^-4	1	UPSTREAM tRNA:CR30229 INTRON Mctp
3R	26131267	3R_26131267_SNP [dm3] 3R_30305545_SNP [dm6]	G	C	2.228e^-4	1	DOWNSTREAM CG34300 INTRON hdc
3L	7017165	3L_7017165_SNP [dm3] 3L_7024065_SNP [dm6]	G	A	2.232e^-4	1	INTRON Mp
3L	8690532	3L_8690532_SNP [dm3] 3L_8697432_SNP [dm6]	T	G	2.239e^-4	1	INTERGENIC
X	21253772	X_21253772_SNP [dm3] X_21382745_SNP [dm6]	A	G	2.248e^-4	1	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	552367	3L_552367_SNP [dm3] 3L_552367_SNP [dm6]	A	G	2.257e^-4	1	INTRON hipk
3L	23261605	3L_23261605_SNP [dm3] 3L_23268505_SNP [dm6]	A	T	2.259e^-4	1	INTRON nAChRalpha4
X	15312109	X_15312109_SNP [dm3] X_15418076_SNP [dm6]	A	G	2.269e^-4	1	INTRON Cngl
2L	7576296	2L_7576296_SNP [dm3] 2L_7576296_SNP [dm6]	A	T	2.270e^-4	1	UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7574301	2L_7574301_SNP [dm3] 2L_7574301_SNP [dm6]	C	T	2.283e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2L	7574497	2L_7574497_SNP [dm3] 2L_7574497_SNP [dm6]	C	T	2.283e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
3R	5953686	3R_5953686_SNP [dm3] 3R_10127964_SNP [dm6]	G	T	2.284e^-4	1	UTR_3_PRIME tws
2R	7121705	2R_7121705_SNP [dm3] 2R_11234200_SNP [dm6]	A	G	2.284e^-4	1	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3R	14250140	3R_14250140_SNP [dm3] 3R_18424418_SNP [dm6]	A	T	2.285e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17339879	3R_17339879_SNP [dm3] 3R_21514157_SNP [dm6]	T	A	2.294e^-4	1	INTERGENIC
3L	13976514	3L_13976514_SNP [dm3] 3L_13983414_SNP [dm6]	G	A	2.305e^-4	1	INTRON CG17364
X	20328280	X_20328280_SNP [dm3] X_20457253_SNP [dm6]	C	T	2.307e^-4	1	INTRON CG32506
X	17170260	X_17170260_SNP [dm3] X_17276227_SNP [dm6]	A	T	2.326e^-4	1	INTRON f
3R	26985840	3R_26985840_SNP [dm3] 3R_31160118_SNP [dm6]	C	T	2.327e^-4	1	INTRON Gycbeta100B & 1 other
3L	2003072	3L_2003072_SNP [dm3] 3L_2003072_SNP [dm6]	C	A	2.333e^-4	1	DOWNSTREAM CG42841 INTERGENIC
3R	7359071	3R_7359071_DEL [dm3] 3R_11533349_DEL [dm6]	CG	C	2.340e^-4	1	DOWNSTREAM dpr4 INTERGENIC
2R	16036628	2R_16036628_SNP [dm3] 2R_20149123_SNP [dm6]	T	C	2.341e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6683669	3L_6683669_SNP [dm3] 3L_6690569_SNP [dm6]	G	A	2.348e^-4	1	SYNONYMOUS_CODING SP1173
X	17170181	X_17170181_SNP [dm3] X_17276148_SNP [dm6]	G	A	2.349e^-4	1	INTRON f
2R	6968002	2R_6968002_SNP [dm3] 2R_11080497_SNP [dm6]	C	T	2.352e^-4	1	INTRON luna
2L	12876192	2L_12876192_SNP [dm3] 2L_12876192_SNP [dm6]	T	C	2.357e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	1561149	X_1561149_SNP [dm3] X_1667116_SNP [dm6]	G	A	2.359e^-4	1	SYNONYMOUS_CODING dor INTRON Mur2B	TF binding site mE1_TFBS_sens
X	3643465	X_3643465_SNP [dm3] X_3749432_SNP [dm6]	A	T	2.360e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20995873	3R_20995873_SNP [dm3] 3R_25170151_SNP [dm6]	T	A	2.366e^-4	1	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7580710	2L_7580710_SNP [dm3] 2L_7580710_SNP [dm6]	C	T	2.373e^-4	1	INTERGENIC
X	1411660	X_1411660_SNP [dm3] X_1517627_SNP [dm6]	T	C	2.378e^-4	1	DOWNSTREAM inc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20291789	X_20291789_SNP [dm3] X_20420762_SNP [dm6]	A	C	2.385e^-4	1	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	461401	3L_461401_SNP [dm3] 3L_461401_SNP [dm6]	G	A	2.386e^-4	1	INTRON klar
X	15311720	X_15311720_SNP [dm3] X_15417687_SNP [dm6]	T	C	2.392e^-4	1	INTRON Cngl
2R	19247631	2R_19247631_SNP [dm3] 2R_23360108_SNP [dm6]	G	C	2.394e^-4	1	SYNONYMOUS_CODING CG34424 DOWNSTREAM vir & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17926588	3R_17926588_SNP [dm3] 3R_22100866_SNP [dm6]	G	T	2.396e^-4	1	INTRON CG5778
3L	9328234	3L_9328234_SNP [dm3] 3L_9335134_SNP [dm6]	C	G	2.420e^-4	1	UPSTREAM PGRP-LA INTRON PGRP-LA
X	7582017	X_7582017_SNP [dm3] X_7687984_SNP [dm6]	C	T	2.424e^-4	1	SYNONYMOUS_CODING CHES-1-like
3L	1362645	3L_1362645_SNP [dm3] 3L_1362645_SNP [dm6]	C	A	2.425e^-4	1	INTRON Ptp61F
3L	15121376	3L_15121376_SNP [dm3] 3L_15128276_SNP [dm6]	G	C	2.447e^-4	1	DOWNSTREAM Cep135 INTRON CG13457
X	1544166	X_1544166_SNP [dm3] X_1650133_SNP [dm6]	A	G	2.450e^-4	1	DOWNSTREAM br INTRON Mur2B & 1 other
3L	12418923	3L_12418923_SNP [dm3] 3L_12425823_SNP [dm6]	C	T	2.453e^-4	1	INTRON toe
3R	17341634	3R_17341634_SNP [dm3] 3R_21515912_SNP [dm6]	A	G	2.462e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5484932	2L_5484932_SNP [dm3] 2L_5484932_SNP [dm6]	T	C	2.463e^-4	1	INTERGENIC
3L	16482989	3L_16482989_SNP [dm3] 3L_16489889_SNP [dm6]	T	A	2.469e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10774643	2L_10774643_SNP [dm3] 2L_10774643_SNP [dm6]	C	T	2.472e^-4	1	SYNONYMOUS_CODING CG31869
2R	11693260	2R_11693260_SNP [dm3] 2R_15805755_SNP [dm6]	C	T	2.483e^-4	1	INTRON tun & 1 other
X	1558971	X_1558971_SNP [dm3] X_1664938_SNP [dm6]	G	T	2.485e^-4	1	UPSTREAM dor DOWNSTREAM br INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18497874	X_18497874_SNP [dm3] X_18603841_SNP [dm6]	T	C	2.486e^-4	1	INTERGENIC
2R	14816718	2R_14816718_SNP [dm3] 2R_18929213_SNP [dm6]	A	T	2.501e^-4	1	INTRON sano
3L	16933889	3L_16933889_SNP [dm3] 3L_16940789_SNP [dm6]	G	T	2.502e^-4	1	SYNONYMOUS_CODING Cpr73D
2L	6344318	2L_6344318_SNP [dm3] 2L_6344318_SNP [dm6]	A	G	2.508e^-4	1	INTRON Cpr	TF binding site mE1_TFBS_HSA
2R	19240838	2R_19240838_SNP [dm3] 2R_23353315_SNP [dm6]	C	T	2.510e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5414309	X_5414309_SNP [dm3] X_5520276_SNP [dm6]	G	A	2.518e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3936895	X_3936895_SNP [dm3] X_4042862_SNP [dm6]	C	A	2.525e^-4	1	INTERGENIC
3R	18991825	3R_18991825_SNP [dm3] 3R_23166103_SNP [dm6]	T	A	2.535e^-4	1	INTERGENIC
2L	4013158	2L_4013158_SNP [dm3] 2L_4013158_SNP [dm6]	T	G	2.538e^-4	1	INTERGENIC
2R	15082701	2R_15082701_SNP [dm3] 2R_19195196_SNP [dm6]	T	G	2.540e^-4	1	INTRON hppy
X	3870839	X_3870839_SNP [dm3] X_3976806_SNP [dm6]	A	G	2.562e^-4	1	INTERGENIC
3L	9327649	3L_9327649_SNP [dm3] 3L_9334549_SNP [dm6]	T	G	2.568e^-4	1	INTRON PGRP-LA
3L	9836183	3L_9836183_SNP [dm3] 3L_9843083_SNP [dm6]	A	G	2.569e^-4	1	INTRON RasGAP1
X	12883285	X_12883285_SNP [dm3] X_12989252_SNP [dm6]	T	A	2.570e^-4	1	INTRON rad
2R	17274409	2R_17274409_SNP [dm3] 2R_21386904_SNP [dm6]	T	A	2.575e^-4	1	UPSTREAM EfSec INTRON Acox57D-p	TF binding site mE1_TFBS_sens
3L	13145723	3L_13145723_SNP [dm3] 3L_13152623_SNP [dm6]	C	G	2.576e^-4	1	INTERGENIC
3R	22321792	3R_22321792_SNP [dm3] 3R_26496070_SNP [dm6]	C	T	2.579e^-4	1	INTRON plum
3R	15073045	3R_15073045_SNP [dm3] 3R_19247323_SNP [dm6]	G	T	2.581e^-4	1	SYNONYMOUS_CODING CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	15190250	3L_15190250_SNP [dm3] 3L_15197150_SNP [dm6]	A	G	2.598e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13941581	3L_13941581_SNP [dm3] 3L_13948481_SNP [dm6]	G	T	2.599e^-4	1	INTRON CG32137
X	2515188	X_2515188_SNP [dm3] X_2621155_SNP [dm6]	G	A	2.599e^-4	1	SYNONYMOUS_CODING Seipin DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15311583	X_15311583_SNP [dm3] X_15417550_SNP [dm6]	A	T	2.603e^-4	1	INTRON Cngl
2L	13911007	2L_13911007_SNP [dm3] 2L_13911007_SNP [dm6]	G	A	2.605e^-4	1	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
X	1463922	X_1463922_SNP [dm3] X_1569889_SNP [dm6]	A	T	2.605e^-4	1	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4587209	2L_4587209_SNP [dm3] 2L_4587209_SNP [dm6]	T	C	2.608e^-4	1	INTRON dp	TF binding site mE1_TFBS_HSA
2L	7617056	2L_7617056_SNP [dm3] 2L_7617056_SNP [dm6]	C	T	2.609e^-4	1	DOWNSTREAM CG6739 INTERGENIC
2R	16775507	2R_16775507_SNP [dm3] 2R_20888002_SNP [dm6]	G	A	2.613e^-4	1	INTRON otp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26733377	3R_26733377_SNP [dm3] 3R_30907655_SNP [dm6]	G	A	2.623e^-4	1	INTERGENIC
2L	14413744	2L_14413744_SNP [dm3] 2L_14413744_SNP [dm6]	G	A	2.624e^-4	1	INTERGENIC
3L	777719	3L_777719_SNP [dm3] 3L_777719_SNP [dm6]	C	T	2.625e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12444626	3L_12444626_SNP [dm3] 3L_12451526_SNP [dm6]	T	G	2.633e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11692932	2R_11692932_SNP [dm3] 2R_15805427_SNP [dm6]	T	C	2.634e^-4	1	INTRON tun & 1 other
3R	26473624	3R_26473624_SNP [dm3] 3R_30647902_SNP [dm6]	C	T	2.638e^-4	1	SYNONYMOUS_CODING PH4alphaPV
2R	12811995	2R_12811995_INS [dm3] 2R_16924490_INS [dm6]	G	GG	2.644e^-4	1	UPSTREAM Pkc53E INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21252624	X_21252624_SNP [dm3] X_21381597_SNP [dm6]	C	A	2.653e^-4	1	UPSTREAM slgA INTRON slgA
3L	9328244	3L_9328244_SNP [dm3] 3L_9335144_SNP [dm6]	G	C	2.657e^-4	1	UPSTREAM PGRP-LA INTRON PGRP-LA
2R	16035474	2R_16035474_SNP [dm3] 2R_20147969_SNP [dm6]	C	A	2.662e^-4	1	INTERGENIC
2L	5028406	2L_5028406_SNP [dm3] 2L_5028406_SNP [dm6]	T	C	2.676e^-4	1	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
X	3640622	X_3640622_SNP [dm3] X_3746589_SNP [dm6]	T	A	2.683e^-4	1	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	17411578	3L_17411578_SNP [dm3] 3L_17418478_SNP [dm6]	C	A	2.687e^-4	1	INTRON blot
3R	10625180	3R_10625180_DEL [dm3] 3R_14799458_DEL [dm6]	AGC	TT	2.694e^-4	1	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1547117	X_1547117_SNP [dm3] X_1653084_SNP [dm6]	A	G	2.701e^-4	1	DOWNSTREAM CG11509 INTRON Mur2B & 1 other
3R	26473650	3R_26473650_SNP [dm3] 3R_30647928_SNP [dm6]	A	C	2.703e^-4	1	NON_SYNONYMOUS_CODING PH4alphaPV
2R	12788764	2R_12788764_SNP [dm3] 2R_16901259_SNP [dm6]	T	A	2.705e^-4	1	INTRON inaC
3R	20537416	3R_20537416_SNP [dm3] 3R_24711694_SNP [dm6]	T	G	2.707e^-4	1	DOWNSTREAM slo INTERGENIC
2L	9949168	2L_9949168_SNP [dm3] 2L_9949168_SNP [dm6]	T	G	2.710e^-4	1	INTERGENIC
2R	11692916	2R_11692916_SNP [dm3] 2R_15805411_SNP [dm6]	T	C	2.713e^-4	1	INTRON tun & 1 other
3R	17911928	3R_17911928_SNP [dm3] 3R_22086206_SNP [dm6]	G	A	2.736e^-4	1	UPSTREAM CG5791 INTRON CG5778
3R	7338719	3R_7338719_SNP [dm3] 3R_11512997_SNP [dm6]	C	A	2.746e^-4	1	INTERGENIC
2R	10026374	2R_10026374_SNP [dm3] 2R_14138869_SNP [dm6]	G	A	2.767e^-4	1	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20251965	X_20251965_SNP [dm3] X_20380938_SNP [dm6]	T	G	2.777e^-4	1	INTERGENIC
2R	19309879	2R_19309879_SNP [dm3] 2R_23422356_SNP [dm6]	T	C	2.782e^-4	1	INTRON CG9815
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	2.797e^-4	1	INTRON bol
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	2.797e^-4	1	INTRON bol
3L	6841724	3L_6841724_SNP [dm3] 3L_6848624_SNP [dm6]	C	G	2.816e^-4	1	INTERGENIC
2R	8558056	2R_8558056_SNP [dm3] 2R_12670551_SNP [dm6]	A	T	2.829e^-4	1	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	5602386	2L_5602386_SNP [dm3] 2L_5602386_SNP [dm6]	G	C	2.830e^-4	1	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15011156	2R_15011156_SNP [dm3] 2R_19123651_SNP [dm6]	G	A	2.835e^-4	1	SYNONYMOUS_CODING CG15117	TF binding site mE1_TFBS_HSA
2R	17662050	2R_17662050_SNP [dm3] 2R_21774545_SNP [dm6]	G	A	2.837e^-4	1	INTRON CG4021
X	16763731	X_16763731_SNP [dm3] X_16869698_SNP [dm6]	A	C	2.849e^-4	1	INTRON CG13003
2R	14658620	2R_14658620_SNP [dm3] 2R_18771115_SNP [dm6]	A	G	2.864e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3R	24503418	3R_24503418_SNP [dm3] 3R_28677696_SNP [dm6]	T	A	2.867e^-4	1	INTRON CG9990
2L	9211770	2L_9211770_SNP [dm3] 2L_9211770_SNP [dm6]	T	G	2.890e^-4	1	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18504739	X_18504739_SNP [dm3] X_18610706_SNP [dm6]	C	T	2.896e^-4	1	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13226399	2L_13226399_SNP [dm3] 2L_13226399_SNP [dm6]	T	C	2.898e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19098316	3R_19098316_DEL [dm3] 3R_23272594_DEL [dm6]	CAC	C	2.901e^-4	1	INTRON orb
3R	25592631	3R_25592631_SNP [dm3] 3R_29766909_SNP [dm6]	A	C	2.909e^-4	1	UTR_5_PRIME kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	780575	3L_780575_SNP [dm3] 3L_780575_SNP [dm6]	C	T	2.911e^-4	1	INTERGENIC
3R	22320980	3R_22320980_SNP [dm3] 3R_26495258_SNP [dm6]	T	A	2.920e^-4	1	INTRON plum
3L	3458866	3L_3458866_SNP [dm3] 3L_3458866_SNP [dm6]	A	G	2.926e^-4	1	INTRON eIF5B	TF binding site mE1_TFBS_cad
3R	27701641	3R_27701641_INS [dm3] 3R_31875919_INS [dm6]	T	TTGT	2.937e^-4	1	INTRON heph
3R	19002525	3R_19002525_SNP [dm3] 3R_23176803_SNP [dm6]	C	A	2.939e^-4	1	INTRON Irk1
2L	5602351	2L_5602351_SNP [dm3] 2L_5602351_SNP [dm6]	C	T	2.947e^-4	1	UTR_3_PRIME CG14010 DOWNSTREAM CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20257354	X_20257354_SNP [dm3] X_20386327_SNP [dm6]	T	C	2.959e^-4	1	INTERGENIC
3L	3616271	3L_3616271_SNP [dm3] 3L_3616271_SNP [dm6]	A	T	2.961e^-4	1	SYNONYMOUS_CODING CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	16806854	2R_16806854_SNP [dm3] 2R_20919349_SNP [dm6]	T	G	2.965e^-4	1	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	9969900	2R_9969900_SNP [dm3] 2R_14082395_SNP [dm6]	C	A	2.966e^-4	1	INTRON Prosap
2L	13980887	2L_13980887_SNP [dm3] 2L_13980887_SNP [dm6]	C	T	2.971e^-4	1	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6812008	2L_6812008_SNP [dm3] 2L_6812008_SNP [dm6]	T	C	2.977e^-4	1	UPSTREAM CR44081 INTERGENIC
3L	778197	3L_778197_SNP [dm3] 3L_778197_SNP [dm6]	A	C	2.982e^-4	1	INTERGENIC
2R	13331728	2R_13331728_SNP [dm3] 2R_17444223_SNP [dm6]	A	T	2.983e^-4	1	DOWNSTREAM mthl4 INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7583859	2L_7583859_SNP [dm3] 2L_7583859_SNP [dm6]	G	A	2.988e^-4	1	DOWNSTREAM Spn28B INTERGENIC
2L	15759582	2L_15759582_SNP [dm3] 2L_15759582_SNP [dm6]	G	A	2.991e^-4	1	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22857526	3R_22857526_SNP [dm3] 3R_27031804_SNP [dm6]	C	A	2.997e^-4	1	INTRON RYa-R
X	2595493	X_2595493_SNP [dm3] X_2701460_SNP [dm6]	C	T	3.000e^-4	1	UTR_3_PRIME Csat DOWNSTREAM CG2662
X	1544489	X_1544489_SNP [dm3] X_1650456_SNP [dm6]	A	C	3.013e^-4	1	INTRON Mur2B & 1 other
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	3.018e^-4	1	UTR_3_PRIME Ndae1 INTRON Ndae1
X	20748517	X_20748517_SNP [dm3] X_20877490_SNP [dm6]	C	G	3.024e^-4	1	INTRON shakB
3R	20121989	3R_20121989_DEL [dm3] 3R_24296267_DEL [dm6]	GTG	G	3.027e^-4	1	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5303134	3L_5303134_SNP [dm3] 3L_5310034_SNP [dm6]	T	C	3.028e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16806853	2R_16806853_SNP [dm3] 2R_20919348_SNP [dm6]	C	T	3.031e^-4	1	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	21881954	X_21881954_SNP [dm3] X_22480118_SNP [dm6]	C	G	3.041e^-4	1	INTRON CG12576	TF binding site BDTNP1_TFBS_dl
3R	18820066	3R_18820066_DEL [dm3] 3R_22994344_DEL [dm6]	AAAAA	G	3.061e^-4	1	UPSTREAM Nha2 INTRON Nha2
3R	23814651	3R_23814651_SNP [dm3] 3R_27988929_SNP [dm6]	C	G	3.062e^-4	1	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18777021	2R_18777021_SNP [dm3] 2R_22889498_SNP [dm6]	T	C	3.068e^-4	1	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	2793527	X_2793527_SNP [dm3] X_2899494_SNP [dm6]	C	T	3.070e^-4	1	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1004358	3L_1004358_SNP [dm3] 3L_1004358_SNP [dm6]	G	A	3.072e^-4	1	INTRON trio
X	2357053	X_2357053_DEL [dm3] X_2463020_DEL [dm6]	GTGGAGG	G	3.081e^-4	1	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11806597	3L_11806597_SNP [dm3] 3L_11813497_SNP [dm6]	T	A	3.081e^-4	1	INTRON CG42255	TF binding site mE1_TFBS_chinmo
2R	16433296	2R_16433296_SNP [dm3] 2R_20545791_SNP [dm6]	A	G	3.084e^-4	1	DOWNSTREAM CG30148 INTERGENIC
X	20292273	X_20292273_DEL [dm3] X_20421246_DEL [dm6]	GG	G	3.085e^-4	1	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
X	12595892	X_12595892_SNP [dm3] X_12701859_SNP [dm6]	A	G	3.090e^-4	1	INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	18617294	2L_18617294_SNP [dm3] 2L_18617294_SNP [dm6]	A	G	3.094e^-4	1	UTR_5_PRIME MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4448310	2L_4448310_SNP [dm3] 2L_4448310_SNP [dm6]	A	G	3.098e^-4	1	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	4119607	2R_4119607_SNP [dm3] 2R_8232102_SNP [dm6]	G	T	3.101e^-4	1	UTR_5_PRIME dpn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23329594	3R_23329594_SNP [dm3] 3R_27503872_SNP [dm6]	T	C	3.110e^-4	1	UPSTREAM CG5402 INTERGENIC
2L	1239750	2L_1239750_SNP [dm3] 2L_1239750_SNP [dm6]	G	A	3.113e^-4	1	UPSTREAM CG5397 INTERGENIC
3R	10625158	3R_10625158_SNP [dm3] 3R_14799436_SNP [dm6]	A	G	3.129e^-4	1	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10625161	3R_10625161_SNP [dm3] 3R_14799439_SNP [dm6]	T	A	3.129e^-4	1	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	904012	2R_904012_SNP [dm3] 2R_5016507_SNP [dm6]	C	A	3.130e^-4	1	INTRON Ir41a
3L	777625	3L_777625_SNP [dm3] 3L_777625_SNP [dm6]	C	T	3.140e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7608240	2L_7608240_SNP [dm3] 2L_7608240_SNP [dm6]	A	C	3.140e^-4	1	UPSTREAM CG6739 DOWNSTREAM Cyp4d21 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3405648	3L_3405648_SNP [dm3] 3L_3405648_SNP [dm6]	C	G	3.141e^-4	1	INTRON sty
2L	20081267	2L_20081267_INS [dm3] 2L_20081267_INS [dm6]	T	TTTTTGCTTT	3.144e^-4	1	DOWNSTREAM fok INTRON neb & 1 other
3R	24663857	3R_24663857_SNP [dm3] 3R_28838135_SNP [dm6]	A	G	3.144e^-4	1	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18727892	3R_18727892_SNP [dm3] 3R_22902170_SNP [dm6]	C	T	3.159e^-4	1	INTRON klg
X	1547580	X_1547580_SNP [dm3] X_1653547_SNP [dm6]	C	G	3.180e^-4	1	DOWNSTREAM CG11509 INTRON Mur2B & 1 other
X	21253757	X_21253757_SNP [dm3] X_21382730_SNP [dm6]	T	G	3.182e^-4	1	SPLICE_SITE_REGION slgA INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13359348	2R_13359348_SNP [dm3] 2R_17471843_SNP [dm6]	C	A	3.184e^-4	1	INTRON qkr54B
X	20328304	X_20328304_SNP [dm3] X_20457277_SNP [dm6]	A	G	3.185e^-4	1	INTRON CG32506
3R	24038362	3R_24038362_SNP [dm3] 3R_28212640_SNP [dm6]	C	A	3.187e^-4	1	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	9294426	X_9294426_SNP [dm3] X_9400393_SNP [dm6]	C	T	3.192e^-4	1	INTRON mgl
3R	20122468	3R_20122468_SNP [dm3] 3R_24296746_SNP [dm6]	T	C	3.202e^-4	1	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
3L	1096577	3L_1096577_INS [dm3] 3L_1096577_INS [dm6]	C	CC	3.206e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10518384	2L_10518384_SNP [dm3] 2L_10518384_SNP [dm6]	T	C	3.209e^-4	1	SYNONYMOUS_CODING Lrr47
X	16412798	X_16412798_SNP [dm3] X_16518765_SNP [dm6]	C	T	3.219e^-4	1	INTRON para
2L	18331605	2L_18331605_SNP [dm3] 2L_18331605_SNP [dm6]	A	G	3.230e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	12443507	3L_12443507_DEL [dm3] 3L_12450407_DEL [dm6]	TTA	G	3.236e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14877989	X_14877989_DEL [dm3] X_14983956_DEL [dm6]	CGA	C	3.241e^-4	1	INTRON eag
3L	12976230	3L_12976230_SNP [dm3] 3L_12983130_SNP [dm6]	A	G	3.247e^-4	1	INTERGENIC
X	3889708	X_3889708_SNP [dm3] X_3995675_SNP [dm6]	A	T	3.256e^-4	1	INTERGENIC
3R	19584208	3R_19584208_SNP [dm3] 3R_23758486_SNP [dm6]	T	C	3.262e^-4	1	UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	16771298	2R_16771298_SNP [dm3] 2R_20883793_SNP [dm6]	G	T	3.266e^-4	1	UTR_3_PRIME otp	TF binding site mE1_TFBS_hkb
X	1460796	X_1460796_SNP [dm3] X_1566763_SNP [dm6]	G	T	3.272e^-4	1	INTRON Mur2B
2R	14658033	2R_14658033_SNP [dm3] 2R_18770528_SNP [dm6]	G	A	3.274e^-4	1	SYNONYMOUS_CODING Mctp UPSTREAM Mctp DOWNSTREAM tRNA:CR30229
2L	6389339	2L_6389339_SNP [dm3] 2L_6389339_SNP [dm6]	A	G	3.276e^-4	1	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17521802	2R_17521802_SNP [dm3] 2R_21634297_SNP [dm6]	A	T	3.295e^-4	1	UTR_3_PRIME CG15674 UPSTREAM CG10321 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	1550826	X_1550826_SNP [dm3] X_1656793_SNP [dm6]	C	T	3.299e^-4	1	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4514342	3R_4514342_SNP [dm3] 3R_8688620_SNP [dm6]	C	T	3.314e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19595628	3R_19595628_SNP [dm3] 3R_23769906_SNP [dm6]	G	T	3.314e^-4	1	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
2L	7574365	2L_7574365_SNP [dm3] 2L_7574365_SNP [dm6]	T	A	3.315e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
3R	21624581	3R_21624581_SNP [dm3] 3R_25798859_SNP [dm6]	G	A	3.324e^-4	1	INTERGENIC
X	2708996	X_2708996_SNP [dm3] X_2814963_SNP [dm6]	A	T	3.326e^-4	1	INTRON kirre
2L	17881371	2L_17881371_SNP [dm3] 2L_17881371_SNP [dm6]	T	G	3.329e^-4	1	INTERGENIC
3L	18702528	3L_18702528_SNP [dm3] 3L_18709428_SNP [dm6]	A	G	3.330e^-4	1	DOWNSTREAM CR44674 INTERGENIC
3L	10757664	3L_10757664_SNP [dm3] 3L_10764564_SNP [dm6]	G	A	3.338e^-4	1	INTERGENIC
3L	3525312	3L_3525312_SNP [dm3] 3L_3525312_SNP [dm6]	G	C	3.340e^-4	1	INTRON Eip63E
3L	3531538	3L_3531538_SNP [dm3] 3L_3531538_SNP [dm6]	T	G	3.341e^-4	1	INTRON Eip63E
2R	15770353	2R_15770353_SNP [dm3] 2R_19882848_SNP [dm6]	G	A	3.345e^-4	1	INTERGENIC
X	16668217	X_16668217_SNP [dm3] X_16774184_SNP [dm6]	T	C	3.345e^-4	1	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7107809	2L_7107809_INS [dm3] 2L_7107809_INS [dm6]	G	GG	3.347e^-4	1	INTRON Pvf3
3L	7310083	3L_7310083_SNP [dm3] 3L_7316983_SNP [dm6]	T	C	3.351e^-4	1	INTERGENIC
3R	9488910	3R_9488910_SNP [dm3] 3R_13663188_SNP [dm6]	T	C	3.365e^-4	1	UTR_3_PRIME B52 INTRON B52
2L	11610343	2L_11610343_SNP [dm3] 2L_11610343_SNP [dm6]	C	T	3.379e^-4	1	DOWNSTREAM spag4 INTRON kek2
X	17185439	X_17185439_SNP [dm3] X_17291406_SNP [dm6]	C	T	3.380e^-4	1	UTR_5_PRIME Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	24281906	3L_24281906_SNP [dm3] 3L_24288806_SNP [dm6]	T	C	3.391e^-4	1	INTRON Snap25
X	1565070	X_1565070_SNP [dm3] X_1671037_SNP [dm6]	G	A	3.396e^-4	1	SYNONYMOUS_CODING hfw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17170078	X_17170078_SNP [dm3] X_17276045_SNP [dm6]	T	C	3.398e^-4	1	INTRON f
3R	27701929	3R_27701929_SNP [dm3] 3R_31876207_SNP [dm6]	A	C	3.408e^-4	1	INTRON heph
2R	6139293	2R_6139293_SNP [dm3] 2R_10251788_SNP [dm6]	A	G	3.409e^-4	1	INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19239985	2R_19239985_SNP [dm3] 2R_23352462_SNP [dm6]	G	C	3.413e^-4	1	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15731109	3L_15731109_DEL [dm3] 3L_15738009_DEL [dm6]	GTC	T	3.417e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8104862	2R_8104862_DEL [dm3] 2R_12217357_DEL [dm6]	GG	G	3.418e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4192419	3L_4192419_DEL [dm3] 3L_4192419_DEL [dm6]	GCG	G	3.421e^-4	1	UTR_3_PRIME tipE & 1 other
X	18987922	X_18987922_SNP [dm3] X_19093889_SNP [dm6]	A	C	3.421e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6756629	2L_6756629_SNP [dm3] 2L_6756629_SNP [dm6]	C	T	3.432e^-4	1	DOWNSTREAM CG11221 INTERGENIC
3L	778868	3L_778868_SNP [dm3] 3L_778868_SNP [dm6]	A	G	3.432e^-4	1	INTERGENIC
3L	12976233	3L_12976233_SNP [dm3] 3L_12983133_SNP [dm6]	T	C	3.434e^-4	1	INTERGENIC
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	3.436e^-4	1	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	5624181	2L_5624181_SNP [dm3] 2L_5624181_SNP [dm6]	C	T	3.442e^-4	1	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11645700	2L_11645700_SNP [dm3] 2L_11645700_SNP [dm6]	T	C	3.442e^-4	1	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
X	3870837	X_3870837_SNP [dm3] X_3976804_SNP [dm6]	C	T	3.445e^-4	1	INTERGENIC
2L	7569500	2L_7569500_SNP [dm3] 2L_7569500_SNP [dm6]	A	C	3.457e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	777495	3L_777495_SNP [dm3] 3L_777495_SNP [dm6]	A	T	3.461e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8435407	X_8435407_SNP [dm3] X_8541374_SNP [dm6]	T	A	3.464e^-4	1	INTRON Nrg
3L	6683019	3L_6683019_SNP [dm3] 3L_6689919_SNP [dm6]	A	T	3.467e^-4	1	UTR_3_PRIME SP1173
3L	24252311	3L_24252311_SNP [dm3] 3L_24259211_SNP [dm6]	T	A	3.470e^-4	1	INTRON Snap25
X	15311572	X_15311572_SNP [dm3] X_15417539_SNP [dm6]	A	G	3.472e^-4	1	INTRON Cngl
3R	20122425	3R_20122425_SNP [dm3] 3R_24296703_SNP [dm6]	T	G	3.483e^-4	1	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Trl
3L	11805216	3L_11805216_SNP [dm3] 3L_11812116_SNP [dm6]	T	C	3.487e^-4	1	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5333734	X_5333734_SNP [dm3] X_5439701_SNP [dm6]	C	G	3.491e^-4	1	INTERGENIC
2L	2714644	2L_2714644_SNP [dm3] 2L_2714644_SNP [dm6]	G	T	3.498e^-4	1	INTRON CG31690
2R	17812122	2R_17812122_SNP [dm3] 2R_21924617_SNP [dm6]	C	T	3.507e^-4	1	INTRON Fili
3R	20122216	3R_20122216_SNP [dm3] 3R_24296494_SNP [dm6]	G	A	3.510e^-4	1	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8593144	3L_8593144_SNP [dm3] 3L_8600044_SNP [dm6]	A	T	3.519e^-4	1	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3L	17789361	3L_17789361_SNP [dm3] 3L_17796261_SNP [dm6]	A	G	3.524e^-4	1	SYNONYMOUS_CODING CG42816	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19092497	3R_19092497_SNP [dm3] 3R_23266775_SNP [dm6]	G	C	3.546e^-4	1	NON_SYNONYMOUS_CODING orb
2R	14792051	2R_14792051_SNP [dm3] 2R_18904546_SNP [dm6]	T	G	3.549e^-4	1	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13901461	3L_13901461_SNP [dm3] 3L_13908361_SNP [dm6]	T	C	3.549e^-4	1	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14966072	2R_14966072_SNP [dm3] 2R_19078567_SNP [dm6]	A	G	3.552e^-4	1	INTRON 5-HT1A
2R	10287152	2R_10287152_SNP [dm3] 2R_14399647_SNP [dm6]	T	C	3.563e^-4	1	INTERGENIC
2L	7166178	2L_7166178_SNP [dm3] 2L_7166178_SNP [dm6]	G	A	3.569e^-4	1	INTERGENIC
2L	7576477	2L_7576477_SNP [dm3] 2L_7576477_SNP [dm6]	T	G	3.581e^-4	1	UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1216235	3L_1216235_SNP [dm3] 3L_1216235_SNP [dm6]	G	T	3.583e^-4	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	22037945	2L_22037945_SNP [dm3] 2L_22037945_SNP [dm6]	G	C	3.591e^-4	1	UTR_5_PRIME CG41434 UPSTREAM CG41434
X	20363347	X_20363347_SNP [dm3] X_20492320_SNP [dm6]	T	A	3.594e^-4	1	INTRON RhoGAP19D
2R	1588708	2R_1588708_SNP [dm3] 2R_5701203_SNP [dm6]	G	T	3.594e^-4	1	UPSTREAM vlc DOWNSTREAM CG17337 INTERGENIC	transposable element FlyBase
3L	778076	3L_778076_SNP [dm3] 3L_778076_SNP [dm6]	A	G	3.600e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16154831	X_16154831_SNP [dm3] X_16260798_SNP [dm6]	A	G	3.602e^-4	1	INTERGENIC
2R	11686742	2R_11686742_SNP [dm3] 2R_15799237_SNP [dm6]	G	A	3.607e^-4	1	INTRON Zasp52 & 1 other
3R	23031145	3R_23031145_SNP [dm3] 3R_27205423_SNP [dm6]	A	T	3.611e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	18334017	2L_18334017_SNP [dm3] 2L_18334017_SNP [dm6]	T	C	3.614e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA
3L	16926078	3L_16926078_SNP [dm3] 3L_16932978_SNP [dm6]	C	T	3.622e^-4	1	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3L	14561189	3L_14561189_SNP [dm3] 3L_14568089_SNP [dm6]	C	T	3.622e^-4	1	UTR_3_PRIME CG42758
3R	23118372	3R_23118372_SNP [dm3] 3R_27292650_SNP [dm6]	G	A	3.628e^-4	1	UPSTREAM CG3348 INTERGENIC
3L	11765692	3L_11765692_SNP [dm3] 3L_11772592_SNP [dm6]	G	A	3.631e^-4	1	UPSTREAM mir-314 & 1 other INTERGENIC
3L	4665643	3L_4665643_SNP [dm3] 3L_4665643_SNP [dm6]	A	G	3.635e^-4	1	DOWNSTREAM CG32236 INTRON axo
2L	4007975	2L_4007975_SNP [dm3] 2L_4007975_SNP [dm6]	T	C	3.639e^-4	1	UTR_3_PRIME CG43773 UPSTREAM CG43774
2L	2826056	2L_2826056_SNP [dm3] 2L_2826056_SNP [dm6]	C	G	3.643e^-4	1	UPSTREAM CG3123 INTRON Duox
X	19441857	X_19441857_SNP [dm3] X_19547824_SNP [dm6]	C	T	3.651e^-4	1	UPSTREAM CG32532 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3641517	X_3641517_SNP [dm3] X_3747484_SNP [dm6]	C	T	3.658e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9135951	2L_9135951_SNP [dm3] 2L_9135951_SNP [dm6]	A	G	3.669e^-4	1	INTRON CG32982
3L	1214614	3L_1214614_SNP [dm3] 3L_1214614_SNP [dm6]	T	C	3.669e^-4	1	INTRON mwh
3R	5278030	3R_5278030_DEL [dm3] 3R_9452308_DEL [dm6]	AAAAA	A	3.669e^-4	1	UTR_3_PRIME ps
3R	26473493	3R_26473493_SNP [dm3] 3R_30647771_SNP [dm6]	A	T	3.673e^-4	1	NON_SYNONYMOUS_CODING PH4alphaPV
X	1565859	X_1565859_SNP [dm3] X_1671826_SNP [dm6]	A	C	3.675e^-4	1	SYNONYMOUS_CODING hfw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5749905	X_5749905_SNP [dm3] X_5855872_SNP [dm6]	C	A	3.695e^-4	1	INTERGENIC
X	21252575	X_21252575_SNP [dm3] X_21381548_SNP [dm6]	T	C	3.697e^-4	1	UPSTREAM slgA INTRON slgA
3L	10559869	3L_10559869_SNP [dm3] 3L_10566769_SNP [dm6]	C	A	3.704e^-4	1	INTRON A2bp1	TF binding site mE1_TFBS_inv
X	1565874	X_1565874_SNP [dm3] X_1671841_SNP [dm6]	T	C	3.710e^-4	1	SYNONYMOUS_CODING hfw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21380044	3L_21380044_SNP [dm3] 3L_21386944_SNP [dm6]	G	C	3.712e^-4	1	INTRON rgn
X	22094973	X_22094973_SNP [dm3] X_22693137_SNP [dm6]	A	T	3.724e^-4	1	INTRON CR44997
3L	11542080	3L_11542080_SNP [dm3] 3L_11548980_SNP [dm6]	T	A	3.728e^-4	1	INTRON Mob2
2L	7432906	2L_7432906_SNP [dm3] 2L_7432906_SNP [dm6]	G	C	3.733e^-4	1	INTRON CG5958
3L	559804	3L_559804_SNP [dm3] 3L_559804_SNP [dm6]	C	A	3.733e^-4	1	INTRON hipk
X	4137120	X_4137120_SNP [dm3] X_4243087_SNP [dm6]	T	G	3.734e^-4	1	UPSTREAM Femcoat INTERGENIC
3R	27696486	3R_27696486_SNP [dm3] 3R_31870764_SNP [dm6]	A	C	3.739e^-4	1	INTRON heph	TF binding site BDTNP1_TFBS_twi
2R	19240045	2R_19240045_SNP [dm3] 2R_23352522_SNP [dm6]	C	T	3.743e^-4	1	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15826122	2R_15826122_SNP [dm3] 2R_19938617_SNP [dm6]	T	C	3.746e^-4	1	INTERGENIC
2L	12637698	2L_12637698_SNP [dm3] 2L_12637698_SNP [dm6]	G	T	3.748e^-4	1	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
X	20280642	X_20280642_SNP [dm3] X_20409615_SNP [dm6]	C	T	3.753e^-4	1	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	21253775	X_21253775_SNP [dm3] X_21382748_SNP [dm6]	T	A	3.763e^-4	1	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15392368	2R_15392368_SNP [dm3] 2R_19504863_SNP [dm6]	A	G	3.769e^-4	1	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl
3L	3472183	3L_3472183_SNP [dm3] 3L_3472183_SNP [dm6]	A	T	3.774e^-4	1	UPSTREAM CG14971 & 2 others INTERGENIC
2R	18287021	2R_18287021_SNP [dm3] 2R_22399516_SNP [dm6]	A	G	3.805e^-4	1	INTRON babos	TF binding site BDTNP1_TFBS_dl
3L	741091	3L_741091_DEL [dm3] 3L_741091_DEL [dm6]	GCAAATCG	G	3.812e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	917027	X_917027_SNP [dm3] X_1022994_SNP [dm6]	C	T	3.823e^-4	1	INTRON su_w[a]_ & 2 others
3L	8868644	3L_8868644_SNP [dm3] 3L_8875544_SNP [dm6]	A	G	3.829e^-4	1	INTRON dally
2L	4889816	2L_4889816_SNP [dm3] 2L_4889816_SNP [dm6]	A	C	3.841e^-4	1	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17191142	X_17191142_SNP [dm3] X_17297109_SNP [dm6]	A	T	3.841e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	10544561	3L_10544561_SNP [dm3] 3L_10551461_SNP [dm6]	A	C	3.854e^-4	1	INTRON A2bp1
3L	11805201	3L_11805201_SNP [dm3] 3L_11812101_SNP [dm6]	G	A	3.854e^-4	1	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17265751	2R_17265751_SNP [dm3] 2R_21378246_SNP [dm6]	C	T	3.854e^-4	1	INTRON cv-2
2R	15391385	2R_15391385_SNP [dm3] 2R_19503880_SNP [dm6]	T	C	3.860e^-4	1	SYNONYMOUS_CODING CG11007 UPSTREAM CR44472
3L	979192	3L_979192_SNP [dm3] 3L_979192_SNP [dm6]	C	G	3.861e^-4	1	INTRON Glut1
2L	7616958	2L_7616958_SNP [dm3] 2L_7616958_SNP [dm6]	G	T	3.862e^-4	1	DOWNSTREAM CG6739 INTERGENIC
X	15405951	X_15405951_INS [dm3] X_15511918_INS [dm6]	C	CTGCAGACCCC...	3.862e^-4	1	UTR_3_PRIME Ac13E DOWNSTREAM Gmap
3L	16018808	3L_16018808_SNP [dm3] 3L_16025708_SNP [dm6]	G	A	3.869e^-4	1	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3640581	X_3640581_SNP [dm3] X_3746548_SNP [dm6]	A	G	3.875e^-4	1	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	23425806	3R_23425806_SNP [dm3] 3R_27600084_SNP [dm6]	A	G	3.881e^-4	1	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
2R	16338133	2R_16338133_SNP [dm3] 2R_20450628_SNP [dm6]	A	T	3.885e^-4	1	INTRON CG12484
3R	22228930	3R_22228930_SNP [dm3] 3R_26403208_SNP [dm6]	T	C	3.889e^-4	1	INTRON ppk15
X	17184453	X_17184453_SNP [dm3] X_17290420_SNP [dm6]	T	C	3.892e^-4	1	INTRON CG5445 & 1 other
2R	15391214	2R_15391214_SNP [dm3] 2R_19503709_SNP [dm6]	C	G	3.893e^-4	1	SYNONYMOUS_CODING CG11007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5445546	3L_5445546_SNP [dm3] 3L_5452446_SNP [dm6]	T	A	3.909e^-4	1	INTERGENIC
X	20042624	X_20042624_SNP [dm3] X_20148591_SNP [dm6]	A	G	3.919e^-4	1	INTRON CG9572
3L	1117662	3L_1117662_SNP [dm3] 3L_1117662_SNP [dm6]	G	C	3.921e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22095038	X_22095038_SNP [dm3] X_22693202_SNP [dm6]	T	C	3.926e^-4	1	INTRON CR44997
2L	9135481	2L_9135481_SNP [dm3] 2L_9135481_SNP [dm6]	A	T	3.927e^-4	1	INTRON CG32982
3R	17913340	3R_17913340_SNP [dm3] 3R_22087618_SNP [dm6]	C	T	3.934e^-4	1	NON_SYNONYMOUS_CODING CG5791 INTRON CG5778
X	17191055	X_17191055_SNP [dm3] X_17297022_SNP [dm6]	C	T	3.936e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	4790086	2L_4790086_SNP [dm3] 2L_4790086_SNP [dm6]	T	C	3.940e^-4	1	INTRON CG15630
2R	1563527	2R_1563527_SNP [dm3] 2R_5676022_SNP [dm6]	T	C	3.947e^-4	1	DOWNSTREAM scaf INTERGENIC
2L	7607514	2L_7607514_SNP [dm3] 2L_7607514_SNP [dm6]	T	C	3.966e^-4	1	UTR_3_PRIME Cyp4d21 UPSTREAM CG6739
3L	6905521	3L_6905521_SNP [dm3] 3L_6912421_SNP [dm6]	A	G	3.972e^-4	1	SYNONYMOUS_CODING Prat2	TF binding site mE1_TFBS_cad
3L	7203226	3L_7203226_DEL [dm3] 3L_7210126_DEL [dm6]	TCATT	T	3.974e^-4	1	INTERGENIC
3L	2241471	3L_2241471_SNP [dm3] 3L_2241471_SNP [dm6]	T	C	3.976e^-4	1	SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17339941	3R_17339941_SNP [dm3] 3R_21514219_SNP [dm6]	T	G	3.979e^-4	1	INTERGENIC
2R	6719782	2R_6719782_SNP [dm3] 2R_10832277_SNP [dm6]	T	C	3.980e^-4	1	INTRON CG12344	TF binding site mE1_TFBS_inv
3R	24977796	3R_24977796_SNP [dm3] 3R_29152074_SNP [dm6]	G	A	3.980e^-4	1	UTR_3_PRIME Slbp UPSTREAM ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7050978	X_7050978_MNP [dm3] X_7156945_MNP [dm6]	TTG	GCA	3.982e^-4	1	INTRON CG9650	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13265432	3R_13265432_SNP [dm3] 3R_17439710_SNP [dm6]	A	G	3.991e^-4	1	INTRON CG5873 & 1 other
X	6963463	X_6963463_SNP [dm3] X_7069430_SNP [dm6]	C	T	3.994e^-4	1	UTR_5_PRIME CG4607 UPSTREAM CG4607	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7618207	2L_7618207_SNP [dm3] 2L_7618207_SNP [dm6]	G	A	3.997e^-4	1	INTERGENIC
3L	1371132	3L_1371132_SNP [dm3] 3L_1371132_SNP [dm6]	C	G	4.006e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	1096548	3L_1096548_SNP [dm3] 3L_1096548_SNP [dm6]	T	A	4.010e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	13932555	2R_13932555_SNP [dm3] 2R_18045050_SNP [dm6]	G	A	4.015e^-4	1	UTR_5_PRIME CG5770
3L	24295844	3L_24295844_SNP [dm3] 3L_24302744_SNP [dm6]	A	G	4.019e^-4	1	INTERGENIC
2L	18587307	2L_18587307_SNP [dm3] 2L_18587307_SNP [dm6]	G	T	4.020e^-4	1	INTRON Pde11
X	17169120	X_17169120_DEL [dm3] X_17275087_DEL [dm6]	TA	T	4.023e^-4	1	UPSTREAM f INTRON f
3L	4641814	3L_4641814_SNP [dm3] 3L_4641814_SNP [dm6]	A	T	4.025e^-4	1	DOWNSTREAM axo INTRON axo
2L	7053419	2L_7053419_DEL [dm3] 2L_7053419_DEL [dm6]	TT	C	4.028e^-4	1	INTRON milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23900936	3R_23900936_INS [dm3] 3R_28075214_INS [dm6]	G	GGCGAGTGGGCGTGGC...	4.034e^-4	1	INTRON CG34362
2R	6405399	2R_6405399_SNP [dm3] 2R_10517894_SNP [dm6]	T	G	4.063e^-4	1	DOWNSTREAM lola INTRON lola
3L	10757650	3L_10757650_SNP [dm3] 3L_10764550_SNP [dm6]	A	G	4.066e^-4	1	INTERGENIC
3R	26745597	3R_26745597_SNP [dm3] 3R_30919875_SNP [dm6]	G	T	4.066e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24663856	3R_24663856_SNP [dm3] 3R_28838134_SNP [dm6]	A	T	4.068e^-4	1	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3416704	X_3416704_INS [dm3] X_3522671_INS [dm6]	T	TT	4.068e^-4	1	INTRON CR44999 & 1 other
2L	9308072	2L_9308072_SNP [dm3] 2L_9308072_SNP [dm6]	T	C	4.073e^-4	1	INTERGENIC
2L	9308122	2L_9308122_SNP [dm3] 2L_9308122_SNP [dm6]	A	G	4.073e^-4	1	INTERGENIC
2R	19240833	2R_19240833_SNP [dm3] 2R_23353310_SNP [dm6]	A	C	4.075e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7229966	3R_7229966_SNP [dm3] 3R_11404244_SNP [dm6]	G	A	4.078e^-4	1	UTR_3_PRIME pros
3L	11806793	3L_11806793_SNP [dm3] 3L_11813693_SNP [dm6]	G	A	4.086e^-4	1	INTRON CG42255
2L	20058115	2L_20058115_SNP [dm3] 2L_20058115_SNP [dm6]	G	A	4.095e^-4	1	DOWNSTREAM barr INTERGENIC
2L	10183804	2L_10183804_DEL [dm3] 2L_10183804_DEL [dm6]	GTG	G	4.095e^-4	1	INTRON Sur
2R	14953114	2R_14953114_SNP [dm3] 2R_19065609_SNP [dm6]	C	G	4.096e^-4	1	INTERGENIC
2R	18461169	2R_18461169_SNP [dm3] 2R_22573664_SNP [dm6]	A	T	4.098e^-4	1	INTRON dnr1
2R	2815243	2R_2815243_SNP [dm3] 2R_6927738_SNP [dm6]	C	G	4.109e^-4	1	NON_SYNONYMOUS_CODING mim INTRON mim	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	7617353	2L_7617353_SNP [dm3] 2L_7617353_SNP [dm6]	G	A	4.122e^-4	1	DOWNSTREAM CG6739 INTERGENIC
2R	12983153	2R_12983153_SNP [dm3] 2R_17095648_SNP [dm6]	G	A	4.133e^-4	1	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	9220390	3R_9220390_SNP [dm3] 3R_13394668_SNP [dm6]	T	C	4.134e^-4	1	INTRON CCHa2
2L	1394301	2L_1394301_SNP [dm3] 2L_1394301_SNP [dm6]	A	G	4.139e^-4	1	SYNONYMOUS_CODING lea
2R	16134530	2R_16134530_SNP [dm3] 2R_20247025_SNP [dm6]	C	G	4.150e^-4	1	SYNONYMOUS_CODING ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1753009	2L_1753009_SNP [dm3] 2L_1753009_SNP [dm6]	A	C	4.155e^-4	1	UPSTREAM CG17712 DOWNSTREAM CG17648 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14551468	2R_14551468_SNP [dm3] 2R_18663963_SNP [dm6]	A	G	4.162e^-4	1	DOWNSTREAM CG33136 INTERGENIC
2L	1868554	2L_1868554_SNP [dm3] 2L_1868554_SNP [dm6]	T	C	4.187e^-4	1	INTRON CG31663
3L	10544581	3L_10544581_SNP [dm3] 3L_10551481_SNP [dm6]	C	T	4.191e^-4	1	INTRON A2bp1
3L	24287045	3L_24287045_SNP [dm3] 3L_24293945_SNP [dm6]	T	A	4.193e^-4	1	INTRON Snap25
X	5414318	X_5414318_SNP [dm3] X_5520285_SNP [dm6]	A	C	4.207e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19003483	3R_19003483_SNP [dm3] 3R_23177761_SNP [dm6]	T	C	4.217e^-4	1	UPSTREAM Irk1 INTRON Irk1
2L	8231437	2L_8231437_SNP [dm3] 2L_8231437_SNP [dm6]	G	A	4.218e^-4	1	UPSTREAM Pvr INTRON Pvr
3L	2644999	3L_2644999_SNP [dm3] 3L_2644999_SNP [dm6]	G	T	4.220e^-4	1	UPSTREAM CG1143 INTERGENIC
2L	12876182	2L_12876182_SNP [dm3] 2L_12876182_SNP [dm6]	C	T	4.225e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25935293	3R_25935293_SNP [dm3] 3R_30109571_SNP [dm6]	A	C	4.229e^-4	1	NON_SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3535169	2R_3535169_SNP [dm3] 2R_7647664_SNP [dm6]	G	A	4.232e^-4	1	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	4.241e^-4	1	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	10544557	3L_10544557_SNP [dm3] 3L_10551457_SNP [dm6]	C	T	4.244e^-4	1	INTRON A2bp1
X	3239105	X_3239105_SNP [dm3] X_3345072_SNP [dm6]	T	C	4.246e^-4	1	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2547557	3L_2547557_SNP [dm3] 3L_2547557_SNP [dm6]	C	G	4.255e^-4	1	INTRON Spn
X	1562587	X_1562587_SNP [dm3] X_1668554_SNP [dm6]	G	C	4.268e^-4	1	SYNONYMOUS_CODING CG3740 UTR_5_PRIME Mur2B DOWNSTREAM dor	TF binding site mE1_TFBS_chinmo
X	18504698	X_18504698_SNP [dm3] X_18610665_SNP [dm6]	T	C	4.269e^-4	1	SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1564986	X_1564986_SNP [dm3] X_1670953_SNP [dm6]	T	G	4.269e^-4	1	NON_SYNONYMOUS_CODING hfw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20252086	X_20252086_SNP [dm3] X_20381059_SNP [dm6]	A	G	4.271e^-4	1	INTERGENIC
2R	14527788	2R_14527788_SNP [dm3] 2R_18640283_SNP [dm6]	T	C	4.274e^-4	1	UPSTREAM tRNA:G3:55E DOWNSTREAM tRNA:CR30227 & 1 other INTRON CheA56a
3L	16190751	3L_16190751_SNP [dm3] 3L_16197651_SNP [dm6]	T	G	4.276e^-4	1	UPSTREAM CG33687 & 1 other INTERGENIC	transposable element FlyBase
3L	11806587	3L_11806587_SNP [dm3] 3L_11813487_SNP [dm6]	C	G	4.283e^-4	1	INTRON CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	24056662	3R_24056662_SNP [dm3] 3R_28230940_SNP [dm6]	G	A	4.289e^-4	1	INTRON CG34354
3L	4966863	3L_4966863_SNP [dm3] 3L_4966863_SNP [dm6]	G	A	4.295e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7223918	2L_7223918_DEL [dm3] 2L_7223918_DEL [dm6]	ATTCGTAAGAA...	A	4.301e^-4	1	UPSTREAM ico DOWNSTREAM Ndae1 INTRON Ndae1	TF binding site mE1_TFBS_zfh1
2L	8363296	2L_8363296_SNP [dm3] 2L_8363296_SNP [dm6]	C	A	4.310e^-4	1	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	18853715	2R_18853715_SNP [dm3] 2R_22966192_SNP [dm6]	T	G	4.313e^-4	1	INTERGENIC
3L	6905548	3L_6905548_SNP [dm3] 3L_6912448_SNP [dm6]	T	G	4.316e^-4	1	SYNONYMOUS_CODING Prat2	TF binding site mE1_TFBS_cad
2R	7316351	2R_7316351_SNP [dm3] 2R_11428846_SNP [dm6]	A	G	4.318e^-4	1	INTRON Drip
2R	17577764	2R_17577764_SNP [dm3] 2R_21690259_SNP [dm6]	G	T	4.318e^-4	1	UTR_3_PRIME Tim10 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4217022	2L_4217022_SNP [dm3] 2L_4217022_SNP [dm6]	G	A	4.329e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14877657	X_14877657_DEL [dm3] X_14983624_DEL [dm6]	CTAATGATCTC...	C	4.329e^-4	1	INTRON eag
X	1548906	X_1548906_SNP [dm3] X_1654873_SNP [dm6]	C	T	4.335e^-4	1	UTR_3_PRIME br INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
2R	12025137	2R_12025137_SNP [dm3] 2R_16137632_SNP [dm6]	C	T	4.344e^-4	1	UTR_3_PRIME spin UPSTREAM Got1
2R	20388416	2R_20388416_SNP [dm3] 2R_24500893_SNP [dm6]	C	T	4.346e^-4	1	UTR_3_PRIME Prosalpha4T2 UPSTREAM Ssl
X	19441856	X_19441856_SNP [dm3] X_19547823_SNP [dm6]	A	T	4.348e^-4	1	UPSTREAM CG32532 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4588406	3L_4588406_SNP [dm3] 3L_4588406_SNP [dm6]	T	A	4.350e^-4	1	INTRON CG42540
2L	11372081	2L_11372081_SNP [dm3] 2L_11372081_SNP [dm6]	C	G	4.366e^-4	1	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8690560	3L_8690560_SNP [dm3] 3L_8697460_SNP [dm6]	T	A	4.373e^-4	1	INTERGENIC
2R	13418341	2R_13418341_SNP [dm3] 2R_17530836_SNP [dm6]	A	T	4.374e^-4	1	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	9840910	2R_9840910_SNP [dm3] 2R_13953405_SNP [dm6]	G	A	4.376e^-4	1	UPSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26512833	3R_26512833_SNP [dm3] 3R_30687111_SNP [dm6]	G	T	4.382e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9012416	2R_9012416_SNP [dm3] 2R_13124911_SNP [dm6]	A	G	4.385e^-4	1	SYNONYMOUS_CODING CG13325
X	1558800	X_1558800_DEL [dm3] X_1664767_DEL [dm6]	AC	A	4.386e^-4	1	UTR_3_PRIME br UPSTREAM dor INTRON Mur2B	TF binding site BDTNP1_TFBS_dl
3L	778852	3L_778852_SNP [dm3] 3L_778852_SNP [dm6]	G	C	4.388e^-4	1	INTERGENIC
2R	18331391	2R_18331391_SNP [dm3] 2R_22443886_SNP [dm6]	A	G	4.389e^-4	1	INTERGENIC
2L	15759465	2L_15759465_SNP [dm3] 2L_15759465_SNP [dm6]	G	T	4.408e^-4	1	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14204811	2L_14204811_INS [dm3] 2L_14204811_INS [dm6]	G	GG	4.410e^-4	1	INTRON Dyrk2
2L	9211433	2L_9211433_SNP [dm3] 2L_9211433_SNP [dm6]	A	T	4.411e^-4	1	INTRON tai
3L	2644897	3L_2644897_SNP [dm3] 3L_2644897_SNP [dm6]	T	C	4.412e^-4	1	UPSTREAM CG1143 INTERGENIC
3L	4024835	3L_4024835_SNP [dm3] 3L_4024835_SNP [dm6]	A	C	4.431e^-4	1	INTRON CG11594
2L	11822961	2L_11822961_SNP [dm3] 2L_11822961_SNP [dm6]	C	T	4.433e^-4	1	INTRON Pde1c
3L	9022254	3L_9022254_SNP [dm3] 3L_9029154_SNP [dm6]	G	A	4.434e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	19689506	2L_19689506_SNP [dm3] 2L_19689506_SNP [dm6]	C	T	4.435e^-4	1	INTRON Lar
3L	8690561	3L_8690561_DEL [dm3] 3L_8697461_DEL [dm6]	AC	A	4.436e^-4	1	INTERGENIC
3L	10544569	3L_10544569_SNP [dm3] 3L_10551469_SNP [dm6]	C	T	4.436e^-4	1	INTRON A2bp1
2R	18563638	2R_18563638_SNP [dm3] 2R_22676133_SNP [dm6]	G	T	4.442e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27704655	3R_27704655_SNP [dm3] 3R_31878933_SNP [dm6]	A	G	4.449e^-4	1	INTRON heph
3R	23776803	3R_23776803_SNP [dm3] 3R_27951081_SNP [dm6]	T	C	4.454e^-4	1	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
2L	10186948	2L_10186948_SNP [dm3] 2L_10186948_SNP [dm6]	G	A	4.457e^-4	1	SYNONYMOUS_CODING Sur
2R	13212948	2R_13212948_SNP [dm3] 2R_17325443_SNP [dm6]	C	T	4.457e^-4	1	INTRON mbl
3R	21334650	3R_21334650_SNP [dm3] 3R_25508928_SNP [dm6]	A	G	4.462e^-4	1	DOWNSTREAM CG5111 INTERGENIC
2R	15450805	2R_15450805_SNP [dm3] 2R_19563300_SNP [dm6]	A	G	4.471e^-4	1	INTRON sm
3R	26761171	3R_26761171_SNP [dm3] 3R_30935449_SNP [dm6]	G	A	4.471e^-4	1	UTR_3_PRIME CG15549
2L	20068952	2L_20068952_SNP [dm3] 2L_20068952_SNP [dm6]	C	T	4.476e^-4	1	INTRON bwa EXON CR44907	TF binding site mE1_TFBS_cad
2L	17563733	2L_17563733_SNP [dm3] 2L_17563733_SNP [dm6]	A	T	4.478e^-4	1	INTERGENIC
3R	19155622	3R_19155622_SNP [dm3] 3R_23329900_SNP [dm6]	A	G	4.478e^-4	1	INTRON pnt
3L	2645001	3L_2645001_SNP [dm3] 3L_2645001_SNP [dm6]	G	A	4.482e^-4	1	UPSTREAM CG1143 INTERGENIC
2L	7618251	2L_7618251_DEL [dm3] 2L_7618251_DEL [dm6]	TTGCT	T	4.487e^-4	1	INTERGENIC
2L	10601828	2L_10601828_SNP [dm3] 2L_10601828_SNP [dm6]	G	A	4.488e^-4	1	INTRON Trim9
3R	26745469	3R_26745469_SNP [dm3] 3R_30919747_SNP [dm6]	C	G	4.499e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745470	3R_26745470_SNP [dm3] 3R_30919748_SNP [dm6]	A	C	4.499e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745498	3R_26745498_SNP [dm3] 3R_30919776_SNP [dm6]	A	G	4.499e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745903	3R_26745903_SNP [dm3] 3R_30920181_SNP [dm6]	A	G	4.499e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8868198	3L_8868198_SNP [dm3] 3L_8875098_SNP [dm6]	C	A	4.502e^-4	1	INTRON dally
3L	10558268	3L_10558268_DEL [dm3] 3L_10565168_DEL [dm6]	TT	T	4.508e^-4	1	INTRON A2bp1
2L	5138856	2L_5138856_SNP [dm3] 2L_5138856_SNP [dm6]	C	A	4.511e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	14243657	3R_14243657_SNP [dm3] 3R_18417935_SNP [dm6]	G	A	4.535e^-4	1	DOWNSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
2L	5624195	2L_5624195_SNP [dm3] 2L_5624195_SNP [dm6]	T	G	4.558e^-4	1	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18162943	2R_18162943_SNP [dm3] 2R_22275438_SNP [dm6]	C	T	4.571e^-4	1	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1539885	X_1539885_SNP [dm3] X_1645852_SNP [dm6]	C	A	4.585e^-4	1	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15390333	2R_15390333_SNP [dm3] 2R_19502828_SNP [dm6]	C	T	4.590e^-4	1	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	21334858	3R_21334858_SNP [dm3] 3R_25509136_SNP [dm6]	C	T	4.594e^-4	1	DOWNSTREAM CG5111 INTERGENIC
3L	6088695	3L_6088695_SNP [dm3] 3L_6095595_SNP [dm6]	A	T	4.602e^-4	1	UPSTREAM CG10467 INTRON loj
3R	17911923	3R_17911923_SNP [dm3] 3R_22086201_SNP [dm6]	T	C	4.605e^-4	1	UPSTREAM CG5791 INTRON CG5778
3L	24284212	3L_24284212_SNP [dm3] 3L_24291112_SNP [dm6]	T	A	4.607e^-4	1	UPSTREAM CR45159 INTRON Snap25
2L	16198092	2L_16198092_SNP [dm3] 2L_16198092_SNP [dm6]	A	G	4.620e^-4	1	INTERGENIC
X	13348932	X_13348932_SNP [dm3] X_13454899_SNP [dm6]	G	C	4.624e^-4	1	INTRON Neto
X	5111793	X_5111793_SNP [dm3] X_5217760_SNP [dm6]	T	G	4.628e^-4	1	INTRON CG15465 & 1 other
2L	4218439	2L_4218439_SNP [dm3] 2L_4218439_SNP [dm6]	G	T	4.630e^-4	1	INTRON ft
2R	15027994	2R_15027994_SNP [dm3] 2R_19140489_SNP [dm6]	T	C	4.633e^-4	1	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10972825	3L_10972825_SNP [dm3] 3L_10979725_SNP [dm6]	C	T	4.640e^-4	1	INTERGENIC
3L	10972828	3L_10972828_SNP [dm3] 3L_10979728_SNP [dm6]	T	C	4.640e^-4	1	INTERGENIC
3R	26750975	3R_26750975_SNP [dm3] 3R_30925253_SNP [dm6]	G	A	4.643e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2L	17557263	2L_17557263_SNP [dm3] 2L_17557263_SNP [dm6]	T	G	4.644e^-4	1	INTERGENIC
2L	1182782	2L_1182782_SNP [dm3] 2L_1182782_SNP [dm6]	A	G	4.652e^-4	1	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1371134	3L_1371134_SNP [dm3] 3L_1371134_SNP [dm6]	G	A	4.652e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
X	1411486	X_1411486_SNP [dm3] X_1517453_SNP [dm6]	A	G	4.653e^-4	1	UTR_3_PRIME inc DOWNSTREAM inc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8314141	2L_8314141_SNP [dm3] 2L_8314141_SNP [dm6]	T	C	4.655e^-4	1	SYNONYMOUS_CODING CG7806
X	15664030	X_15664030_SNP [dm3] X_15769997_SNP [dm6]	A	G	4.657e^-4	1	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	19891335	X_19891335_DEL [dm3] X_19997302_DEL [dm6]	GG	G	4.672e^-4	1	INTERGENIC
2R	16796960	2R_16796960_SNP [dm3] 2R_20909455_SNP [dm6]	G	A	4.674e^-4	1	UPSTREAM CG9235 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5624320	2L_5624320_SNP [dm3] 2L_5624320_SNP [dm6]	G	A	4.697e^-4	1	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24537910	3R_24537910_SNP [dm3] 3R_28712188_SNP [dm6]	T	C	4.704e^-4	1	INTRON htt
2R	5394666	2R_5394666_SNP [dm3] 2R_9507161_SNP [dm6]	C	A	4.709e^-4	1	INTRON brp
2R	19245997	2R_19245997_SNP [dm3] 2R_23358474_SNP [dm6]	T	A	4.710e^-4	1	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CR44168 & 1 other
X	19560645	X_19560645_SNP [dm3] X_19666612_SNP [dm6]	C	T	4.711e^-4	1	UTR_3_PRIME Ssu72 UPSTREAM Zw DOWNSTREAM CR44512 & 1 other	transposable element FlyBase
2R	6105228	2R_6105228_SNP [dm3] 2R_10217723_SNP [dm6]	G	T	4.716e^-4	1	INTRON Hr46 & 1 other
2L	5602415	2L_5602415_SNP [dm3] 2L_5602415_SNP [dm6]	A	C	4.718e^-4	1	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24036072	3L_24036072_SNP [dm3] 3L_24042972_SNP [dm6]	G	T	4.721e^-4	1	INTERGENIC
3L	5186996	3L_5186996_SNP [dm3] 3L_5193896_SNP [dm6]	T	A	4.725e^-4	1	INTRON shep
3R	27704993	3R_27704993_SNP [dm3] 3R_31879271_SNP [dm6]	T	A	4.726e^-4	1	INTRON heph
3R	25039485	3R_25039485_SNP [dm3] 3R_29213763_SNP [dm6]	A	G	4.729e^-4	1	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4426019	3L_4426019_SNP [dm3] 3L_4426019_SNP [dm6]	C	A	4.729e^-4	1	SYNONYMOUS_CODING CG15020
2L	9970915	2L_9970915_SNP [dm3] 2L_9970915_SNP [dm6]	G	T	4.730e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26985657	3R_26985657_SNP [dm3] 3R_31159935_SNP [dm6]	A	G	4.739e^-4	1	INTRON Gycbeta100B & 1 other
X	20835438	X_20835438_SNP [dm3] X_20964411_SNP [dm6]	A	G	4.743e^-4	1	UPSTREAM Ser6 DOWNSTREAM CG1304 INTERGENIC
2R	8919665	2R_8919665_SNP [dm3] 2R_13032160_SNP [dm6]	C	T	4.762e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	15072602	3R_15072602_SNP [dm3] 3R_19246880_SNP [dm6]	C	T	4.763e^-4	1	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2645120	3L_2645120_INS [dm3] 3L_2645120_INS [dm6]	C	TTTAA	4.769e^-4	1	UPSTREAM CG1143 INTERGENIC
2L	9599949	2L_9599949_SNP [dm3] 2L_9599949_SNP [dm6]	C	G	4.772e^-4	1	INTRON CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22141838	3R_22141838_SNP [dm3] 3R_26316116_SNP [dm6]	T	G	4.778e^-4	1	INTERGENIC
3R	18820141	3R_18820141_SNP [dm3] 3R_22994419_SNP [dm6]	T	A	4.781e^-4	1	UPSTREAM Nha2 INTRON Nha2
3L	10885576	3L_10885576_SNP [dm3] 3L_10892476_SNP [dm6]	A	T	4.792e^-4	1	UTR_3_PRIME Cpr67Fa2
3R	26484920	3R_26484920_SNP [dm3] 3R_30659198_SNP [dm6]	C	G	4.827e^-4	1	INTERGENIC
3R	8637349	3R_8637349_SNP [dm3] 3R_12811627_SNP [dm6]	G	A	4.831e^-4	1	SYNONYMOUS_CODING CG31345	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19759106	3R_19759106_SNP [dm3] 3R_23933384_SNP [dm6]	G	A	4.833e^-4	1	SYNONYMOUS_CODING RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl
X	21253778	X_21253778_SNP [dm3] X_21382751_SNP [dm6]	T	C	4.839e^-4	1	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11604752	2R_11604752_SNP [dm3] 2R_15717247_SNP [dm6]	G	A	4.845e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12547431	3L_12547431_SNP [dm3] 3L_12554331_SNP [dm6]	T	C	4.846e^-4	1	INTRON sowah
2R	15391340	2R_15391340_SNP [dm3] 2R_19503835_SNP [dm6]	A	G	4.846e^-4	1	SYNONYMOUS_CODING CG11007 UPSTREAM CR44472	TF binding site mE1_TFBS_sens
2R	6043535	2R_6043535_SNP [dm3] 2R_10156030_SNP [dm6]	G	A	4.851e^-4	1	UTR_3_PRIME mlt DOWNSTREAM mlt INTRON KCNQ
X	11000100	X_11000100_SNP [dm3] X_11106067_SNP [dm6]	A	C	4.851e^-4	1	INTRON CG42249
3R	26471746	3R_26471746_SNP [dm3] 3R_30646024_SNP [dm6]	G	A	4.856e^-4	1	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
2R	14658603	2R_14658603_SNP [dm3] 2R_18771098_SNP [dm6]	A	G	4.859e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2L	1759886	2L_1759886_SNP [dm3] 2L_1759886_SNP [dm6]	A	T	4.864e^-4	1	UPSTREAM CG17650 INTERGENIC
X	17607496	X_17607496_DEL [dm3] X_17713463_DEL [dm6]	TTGCCA	T	4.864e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24253353	3L_24253353_SNP [dm3] 3L_24260253_SNP [dm6]	T	C	4.888e^-4	1	INTRON Snap25
3R	15868086	3R_15868086_SNP [dm3] 3R_20042364_SNP [dm6]	G	T	4.891e^-4	1	UPSTREAM Indy-2 & 1 other INTRON CG17193
3L	4185929	3L_4185929_SNP [dm3] 3L_4185929_SNP [dm6]	C	T	4.892e^-4	1	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	4588405	3L_4588405_SNP [dm3] 3L_4588405_SNP [dm6]	C	G	4.911e^-4	1	INTRON CG42540
2R	9815595	2R_9815595_SNP [dm3] 2R_13928090_SNP [dm6]	G	A	4.944e^-4	1	INTRON shot
2L	1955856	2L_1955856_SNP [dm3] 2L_1955856_SNP [dm6]	A	G	4.951e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	17190352	X_17190352_SNP [dm3] X_17296319_SNP [dm6]	T	C	4.954e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	18782316	2R_18782316_SNP [dm3] 2R_22894793_SNP [dm6]	A	G	4.960e^-4	1	SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22135787	X_22135787_SNP [dm3] X_22733951_SNP [dm6]	C	T	4.961e^-4	1	INTRON CR44997
2R	4657257	2R_4657257_SNP [dm3] 2R_8769752_SNP [dm6]	T	C	4.972e^-4	1	UPSTREAM CR44278 INTERGENIC
2R	6719683	2R_6719683_INS [dm3] 2R_10832178_INS [dm6]	A	AAAAAACA	4.980e^-4	1	INTRON CG12344	TF binding site mE1_TFBS_inv
2L	14589363	2L_14589363_SNP [dm3] 2L_14589363_SNP [dm6]	T	G	4.983e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
X	20293040	X_20293040_SNP [dm3] X_20422013_SNP [dm6]	C	A	4.989e^-4	1	INTRON Pp4-19C
3L	4588358	3L_4588358_SNP [dm3] 3L_4588358_SNP [dm6]	T	C	4.995e^-4	1	INTRON CG42540
3R	14802835	3R_14802835_SNP [dm3] 3R_18977113_SNP [dm6]	G	C	4.999e^-4	1	UTR_3_PRIME CG42613 DOWNSTREAM CG42613 & 1 other
3R	24514467	3R_24514467_SNP [dm3] 3R_28688745_SNP [dm6]	T	C	4.999e^-4	1	UPSTREAM CG9990 INTRON CG9990
2R	20299199	2R_20299199_SNP [dm3] 2R_24411676_SNP [dm6]	G	A	5.001e^-4	1	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22228923	3R_22228923_SNP [dm3] 3R_26403201_SNP [dm6]	C	T	5.040e^-4	1	INTRON ppk15
2R	15027995	2R_15027995_SNP [dm3] 2R_19140490_SNP [dm6]	A	G	5.042e^-4	1	NON_SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	524094	3L_524094_SNP [dm3] 3L_524094_SNP [dm6]	C	G	5.042e^-4	1	INTRON klar	regulatory region REDfly_CRMs
X	2795306	X_2795306_SNP [dm3] X_2901273_SNP [dm6]	A	C	5.044e^-4	1	INTRON kirre
2L	12486319	2L_12486319_SNP [dm3] 2L_12486319_SNP [dm6]	C	G	5.052e^-4	1	INTRON bun
2R	14545986	2R_14545986_SNP [dm3] 2R_18658481_SNP [dm6]	C	T	5.056e^-4	1	UTR_3_PRIME Gint3 & 1 other UPSTREAM SP2637
3L	3522589	3L_3522589_SNP [dm3] 3L_3522589_SNP [dm6]	A	G	5.057e^-4	1	DOWNSTREAM CR45043 INTRON Eip63E
3R	26127635	3R_26127635_SNP [dm3] 3R_30301913_SNP [dm6]	C	T	5.058e^-4	1	INTRON hdc
X	9026020	X_9026020_SNP [dm3] X_9131987_SNP [dm6]	G	A	5.059e^-4	1	INTRON fend	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
3R	19081929	3R_19081929_SNP [dm3] 3R_23256207_SNP [dm6]	T	C	5.080e^-4	1	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
X	4937865	X_4937865_SNP [dm3] X_5043832_SNP [dm6]	T	C	5.082e^-4	1	INTRON CR44833
2L	13430888	2L_13430888_SNP [dm3] 2L_13430888_SNP [dm6]	T	C	5.086e^-4	1	INTRON CG42784
2L	7583321	2L_7583321_SNP [dm3] 2L_7583321_SNP [dm6]	A	T	5.091e^-4	1	UTR_3_PRIME Spn28B DOWNSTREAM Spn28B
X	15311515	X_15311515_SNP [dm3] X_15417482_SNP [dm6]	G	C	5.105e^-4	1	INTRON Cngl
2L	7607207	2L_7607207_SNP [dm3] 2L_7607207_SNP [dm6]	C	T	5.107e^-4	1	SYNONYMOUS_CODING Cyp4d21
2L	14418395	2L_14418395_SNP [dm3] 2L_14418395_SNP [dm6]	A	T	5.113e^-4	1	INTERGENIC
3L	1371380	3L_1371380_SNP [dm3] 3L_1371380_SNP [dm6]	A	G	5.128e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
2L	12774168	2L_12774168_SNP [dm3] 2L_12774168_SNP [dm6]	G	C	5.130e^-4	1	INTERGENIC
3R	20332253	3R_20332253_SNP [dm3] 3R_24506531_SNP [dm6]	C	T	5.134e^-4	1	INTERGENIC
2L	9599796	2L_9599796_SNP [dm3] 2L_9599796_SNP [dm6]	A	G	5.139e^-4	1	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19931429	2L_19931429_SNP [dm3] 2L_19931429_SNP [dm6]	T	G	5.141e^-4	1	INTRON sick
3R	9224575	3R_9224575_SNP [dm3] 3R_13398853_SNP [dm6]	G	A	5.142e^-4	1	NON_SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377
3R	24056571	3R_24056571_SNP [dm3] 3R_28230849_SNP [dm6]	G	C	5.147e^-4	1	INTRON CG34354
X	20748514	X_20748514_SNP [dm3] X_20877487_SNP [dm6]	T	A	5.148e^-4	1	INTRON shakB
2R	19245689	2R_19245689_SNP [dm3] 2R_23358166_SNP [dm6]	T	C	5.151e^-4	1	SYNONYMOUS_CODING CG9875 UPSTREAM CG3500 & 1 other DOWNSTREAM CR44168	TF binding site mE1_TFBS_HSA
2L	7605055	2L_7605055_SNP [dm3] 2L_7605055_SNP [dm6]	C	A	5.166e^-4	1	UPSTREAM Cyp4d21 DOWNSTREAM CR45370 INTERGENIC
3L	5525901	3L_5525901_SNP [dm3] 3L_5532801_SNP [dm6]	G	T	5.172e^-4	1	INTERGENIC
3R	22153268	3R_22153268_SNP [dm3] 3R_26327546_SNP [dm6]	G	T	5.176e^-4	1	INTRON CG33970
3L	11006259	3L_11006259_SNP [dm3] 3L_11013159_SNP [dm6]	T	C	5.181e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14648200	2R_14648200_SNP [dm3] 2R_18760695_SNP [dm6]	A	G	5.182e^-4	1	UPSTREAM Jabba INTRON Jabba
3R	22088065	3R_22088065_DEL [dm3] 3R_26262343_DEL [dm6]	AAATC	A	5.187e^-4	1	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3642105	X_3642105_SNP [dm3] X_3748072_SNP [dm6]	A	T	5.192e^-4	1	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16198107	2L_16198107_SNP [dm3] 2L_16198107_SNP [dm6]	G	T	5.192e^-4	1	INTERGENIC
3L	4390356	3L_4390356_SNP [dm3] 3L_4390356_SNP [dm6]	C	T	5.193e^-4	1	INTRON slow	TF binding site mE1_TFBS_cad
2R	14700346	2R_14700346_SNP [dm3] 2R_18812841_SNP [dm6]	G	A	5.193e^-4	1	INTRON CG15096
3R	25401585	3R_25401585_SNP [dm3] 3R_29575863_SNP [dm6]	T	C	5.203e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26684339	3R_26684339_SNP [dm3] 3R_30858617_SNP [dm6]	T	C	5.212e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4909289	X_4909289_SNP [dm3] X_5015256_SNP [dm6]	A	T	5.213e^-4	1	INTRON CR44833
X	3926549	X_3926549_SNP [dm3] X_4032516_SNP [dm6]	T	G	5.216e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8593106	3L_8593106_SNP [dm3] 3L_8600006_SNP [dm6]	C	T	5.238e^-4	1	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3L	16273275	3L_16273275_SNP [dm3] 3L_16280175_SNP [dm6]	T	C	5.242e^-4	1	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
X	8346394	X_8346394_SNP [dm3] X_8452361_SNP [dm6]	T	G	5.255e^-4	1	INTRON org-1	TF binding site mE1_TFBS_cad
2L	4328259	2L_4328259_SNP [dm3] 2L_4328259_SNP [dm6]	C	T	5.255e^-4	1	INTRON CG16857
3R	15470735	3R_15470735_SNP [dm3] 3R_19645013_SNP [dm6]	G	C	5.271e^-4	1	UPSTREAM Nup58 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21248199	X_21248199_INS [dm3] X_21377172_INS [dm6]	T	TT	5.280e^-4	1	INTRON slgA
X	15311505	X_15311505_SNP [dm3] X_15417472_SNP [dm6]	C	A	5.284e^-4	1	INTRON Cngl
2R	14648304	2R_14648304_SNP [dm3] 2R_18760799_SNP [dm6]	A	C	5.290e^-4	1	UPSTREAM Jabba & 1 other INTRON Jabba
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	5.300e^-4	1	INTERGENIC
3L	15121405	3L_15121405_SNP [dm3] 3L_15128305_SNP [dm6]	A	T	5.300e^-4	1	DOWNSTREAM Cep135 INTRON CG13457
3L	11049427	3L_11049427_SNP [dm3] 3L_11056327_SNP [dm6]	G	A	5.303e^-4	1	UPSTREAM CG7888 INTRON CG7888
2R	18777826	2R_18777826_SNP [dm3] 2R_22890303_SNP [dm6]	T	A	5.318e^-4	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
3R	25935459	3R_25935459_SNP [dm3] 3R_30109737_SNP [dm6]	C	T	5.319e^-4	1	SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19669164	X_19669164_SNP [dm3] X_19775131_SNP [dm6]	T	C	5.327e^-4	1	DOWNSTREAM vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	18504548	X_18504548_SNP [dm3] X_18610515_SNP [dm6]	T	C	5.333e^-4	1	SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
3L	8593109	3L_8593109_SNP [dm3] 3L_8600009_SNP [dm6]	T	A	5.337e^-4	1	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3L	2583413	3L_2583413_INS [dm3] 3L_2583413_INS [dm6]	T	TCTTATCTT	5.339e^-4	1	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5393623	2R_5393623_SNP [dm3] 2R_9506118_SNP [dm6]	T	C	5.344e^-4	1	INTRON brp
X	22321593	X_22321593_SNP [dm3] X_22919757_SNP [dm6]	A	T	5.350e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24916423	3R_24916423_SNP [dm3] 3R_29090701_SNP [dm6]	C	T	5.354e^-4	1	INTRON CG11873	TF binding site mE1_TFBS_HSA
3R	9267290	3R_9267290_SNP [dm3] 3R_13441568_SNP [dm6]	C	T	5.359e^-4	1	INTERGENIC
3R	14170877	3R_14170877_SNP [dm3] 3R_18345155_SNP [dm6]	T	A	5.362e^-4	1	INTRON CG15803
3L	1849377	3L_1849377_SNP [dm3] 3L_1849377_SNP [dm6]	A	G	5.395e^-4	1	INTERGENIC
3R	25484231	3R_25484231_SNP [dm3] 3R_29658509_SNP [dm6]	C	T	5.396e^-4	1	INTRON Dop1R2
3L	983762	3L_983762_SNP [dm3] 3L_983762_SNP [dm6]	G	C	5.407e^-4	1	INTRON Glut1
2L	7598866	2L_7598866_SNP [dm3] 2L_7598866_SNP [dm6]	T	A	5.409e^-4	1	INTERGENIC
3L	1287295	3L_1287295_SNP [dm3] 3L_1287295_SNP [dm6]	G	T	5.417e^-4	1	INTRON CG32333
2L	7217931	2L_7217931_SNP [dm3] 2L_7217931_SNP [dm6]	C	A	5.422e^-4	1	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4641821	3L_4641821_SNP [dm3] 3L_4641821_SNP [dm6]	T	A	5.426e^-4	1	DOWNSTREAM axo INTRON axo
2L	7572248	2L_7572248_SNP [dm3] 2L_7572248_SNP [dm6]	G	A	5.427e^-4	1	INTRON RapGAP1
X	1544817	X_1544817_SNP [dm3] X_1650784_SNP [dm6]	C	T	5.433e^-4	1	INTRON Mur2B & 1 other
3L	24273563	3L_24273563_SNP [dm3] 3L_24280463_SNP [dm6]	T	A	5.441e^-4	1	INTRON Snap25
2R	14545917	2R_14545917_SNP [dm3] 2R_18658412_SNP [dm6]	A	C	5.442e^-4	1	UPSTREAM SP2637 DOWNSTREAM Gint3 & 1 other INTERGENIC
X	20251978	X_20251978_SNP [dm3] X_20380951_SNP [dm6]	T	A	5.449e^-4	1	INTERGENIC
3R	23439671	3R_23439671_SNP [dm3] 3R_27613949_SNP [dm6]	T	A	5.472e^-4	1	INTRON Tusp
X	4824515	X_4824515_SNP [dm3] X_4930482_SNP [dm6]	C	G	5.482e^-4	1	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	20304123	X_20304123_SNP [dm3] X_20433096_SNP [dm6]	C	T	5.495e^-4	1	UTR_3_PRIME mal UPSTREAM CG1695
2L	7579452	2L_7579452_SNP [dm3] 2L_7579452_SNP [dm6]	A	G	5.498e^-4	1	UPSTREAM RapGAP1 INTERGENIC
3R	14914349	3R_14914349_SNP [dm3] 3R_19088627_SNP [dm6]	C	T	5.504e^-4	1	INTRON cdi
3L	2002756	3L_2002756_SNP [dm3] 3L_2002756_SNP [dm6]	G	C	5.506e^-4	1	DOWNSTREAM CG42841 INTERGENIC
2L	16198116	2L_16198116_SNP [dm3] 2L_16198116_SNP [dm6]	G	T	5.511e^-4	1	INTERGENIC
3R	26131270	3R_26131270_SNP [dm3] 3R_30305548_SNP [dm6]	C	T	5.511e^-4	1	DOWNSTREAM CG34300 INTRON hdc
X	11819410	X_11819410_SNP [dm3] X_11925377_SNP [dm6]	T	A	5.515e^-4	1	UPSTREAM Sclp INTERGENIC
X	15311431	X_15311431_SNP [dm3] X_15417398_SNP [dm6]	T	C	5.522e^-4	1	INTRON Cngl
2R	8350702	2R_8350702_SNP [dm3] 2R_12463197_SNP [dm6]	T	A	5.525e^-4	1	INTRON Lac
3R	26673894	3R_26673894_SNP [dm3] 3R_30848172_SNP [dm6]	G	T	5.548e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	25098233	3R_25098233_SNP [dm3] 3R_29272511_SNP [dm6]	A	G	5.551e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	3472395	3L_3472395_SNP [dm3] 3L_3472395_SNP [dm6]	T	G	5.555e^-4	1	UPSTREAM CG42324 & 1 other INTERGENIC
3L	9579314	3L_9579314_SNP [dm3] 3L_9586214_SNP [dm6]	T	A	5.557e^-4	1	INTRON CG42673
3L	9865928	3L_9865928_SNP [dm3] 3L_9872828_SNP [dm6]	T	A	5.561e^-4	1	INTERGENIC
2R	13368052	2R_13368052_SNP [dm3] 2R_17480547_SNP [dm6]	T	C	5.570e^-4	1	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site mE1_TFBS_cad
X	18797531	X_18797531_SNP [dm3] X_18903498_SNP [dm6]	C	G	5.581e^-4	1	INTRON CG7378
3L	6819777	3L_6819777_SNP [dm3] 3L_6826677_SNP [dm6]	A	G	5.591e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15737238	3R_15737238_SNP [dm3] 3R_19911516_SNP [dm6]	A	C	5.597e^-4	1	SYNONYMOUS_CODING RhoGAP92B

By genomic position
Variant impact
Gene name

LT50_Metarhizium_Ani phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results