DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.746e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.9494	0.0842

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1982 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14206170	3R_14206170_SNP [dm3] 3R_18380448_SNP [dm6]	A	G	4.365e^-7	0.539	INTRON CG7675
3R	14206166	3R_14206166_SNP [dm3] 3R_18380444_SNP [dm6]	C	A	7.010e^-7	0.539	INTRON CG7675
X	4193791	X_4193791_SNP [dm3] X_4299758_SNP [dm6]	G	C	1.569e^-6	0.539	DOWNSTREAM CG12692 INTERGENIC
2R	16647292	2R_16647292_SNP [dm3] 2R_20759787_SNP [dm6]	G	T	1.793e^-6	0.539	INTERGENIC
3R	14205878	3R_14205878_SNP [dm3] 3R_18380156_SNP [dm6]	G	T	2.356e^-6	0.539	INTRON CG7675
3R	13819385	3R_13819385_SNP [dm3] 3R_17993663_SNP [dm6]	C	A	2.806e^-6	0.539	INTRON cpo	TF binding site mE1_TFBS_inv
X	21929617	X_21929617_SNP [dm3] X_22527781_SNP [dm6]	T	C	3.245e^-6	0.539	INTRON CG17600
3R	8993633	3R_8993633_SNP [dm3] 3R_13167911_SNP [dm6]	G	C	3.394e^-6	0.539	INTERGENIC
3R	8993634	3R_8993634_SNP [dm3] 3R_13167912_SNP [dm6]	C	A	3.394e^-6	0.539	INTERGENIC
2R	18954601	2R_18954601_SNP [dm3] 2R_23067078_SNP [dm6]	C	T	3.958e^-6	0.539	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14342424	3R_14342424_SNP [dm3] 3R_18516702_SNP [dm6]	C	T	5.011e^-6	0.539	INTRON fru
3R	14352566	3R_14352566_SNP [dm3] 3R_18526844_SNP [dm6]	A	G	5.595e^-6	0.539	INTRON fru
3L	2020080	3L_2020080_SNP [dm3] 3L_2020080_SNP [dm6]	C	A	6.396e^-6	0.539	DOWNSTREAM CG42357 INTERGENIC
2R	16647346	2R_16647346_SNP [dm3] 2R_20759841_SNP [dm6]	T	G	6.412e^-6	0.539	INTERGENIC
2R	18954608	2R_18954608_SNP [dm3] 2R_23067085_SNP [dm6]	T	C	6.603e^-6	0.539	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18954609	2R_18954609_SNP [dm3] 2R_23067086_SNP [dm6]	T	C	6.603e^-6	0.539	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	2912389	2L_2912389_SNP [dm3] 2L_2912389_SNP [dm6]	T	G	6.621e^-6	0.539	INTRON lilli
2R	16647380	2R_16647380_SNP [dm3] 2R_20759875_SNP [dm6]	G	T	6.809e^-6	0.539	INTERGENIC
2R	18954593	2R_18954593_SNP [dm3] 2R_23067070_SNP [dm6]	A	G	6.953e^-6	0.539	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12476620	2R_12476620_SNP [dm3] 2R_16589115_SNP [dm6]	C	T	7.509e^-6	0.539	UTR_5_PRIME CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18954619	2R_18954619_INS [dm3] 2R_23067096_INS [dm6]	T	TATACCAGTCCAATGTCCAA...	7.562e^-6	0.539	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16647340	2R_16647340_SNP [dm3] 2R_20759835_SNP [dm6]	T	A	7.992e^-6	0.539	INTERGENIC
3L	4540902	3L_4540902_SNP [dm3] 3L_4540902_SNP [dm6]	T	A	8.415e^-6	0.539	INTRON CG32243	TF binding site BDTNP1_TFBS_dl
3L	19862150	3L_19862150_SNP [dm3] 3L_19869050_SNP [dm6]	T	A	8.465e^-6	0.539	INTRON Rab8
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	8.474e^-6	0.539	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	20031780	2R_20031780_SNP [dm3] 2R_24144257_SNP [dm6]	T	C	8.530e^-6	0.539	INTRON Dat
3L	16215337	3L_16215337_SNP [dm3] 3L_16222237_SNP [dm6]	A	G	8.557e^-6	0.539	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4540933	3L_4540933_SNP [dm3] 3L_4540933_SNP [dm6]	G	A	8.766e^-6	0.539	SYNONYMOUS_CODING CG32243	TF binding site BDTNP1_TFBS_dl
X	16301804	X_16301804_SNP [dm3] X_16407771_SNP [dm6]	A	T	9.487e^-6	0.539	UPSTREAM CG4301 INTRON CG4301
3R	21673149	3R_21673149_SNP [dm3] 3R_25847427_SNP [dm6]	G	T	9.630e^-6	0.539	UPSTREAM CR45657 DOWNSTREAM CR45655 EXON CR45656
3R	12810836	3R_12810836_SNP [dm3] 3R_16985114_SNP [dm6]	A	C	9.694e^-6	0.539	INTRON CG18622
X	11754215	X_11754215_SNP [dm3] X_11860182_SNP [dm6]	C	T	9.924e^-6	0.539	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2912384	2L_2912384_SNP [dm3] 2L_2912384_SNP [dm6]	G	A	1.018e^-5	0.539	INTRON lilli
2R	12476773	2R_12476773_SNP [dm3] 2R_16589268_SNP [dm6]	A	C	1.023e^-5	0.539	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16215339	3L_16215339_SNP [dm3] 3L_16222239_SNP [dm6]	A	G	1.070e^-5	0.539	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14085161	3R_14085161_SNP [dm3] 3R_18259439_SNP [dm6]	G	A	1.102e^-5	0.539	INTERGENIC
2R	16647376	2R_16647376_SNP [dm3] 2R_20759871_SNP [dm6]	G	T	1.114e^-5	0.539	INTERGENIC
2R	18109262	2R_18109262_SNP [dm3] 2R_22221757_SNP [dm6]	A	T	1.116e^-5	0.539	NON_SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
2R	18109267	2R_18109267_SNP [dm3] 2R_22221762_SNP [dm6]	A	C	1.122e^-5	0.539	NON_SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
3L	18110392	3L_18110392_SNP [dm3] 3L_18117292_SNP [dm6]	C	T	1.175e^-5	0.551	UTR_3_PRIME CG32195 INTRON CG7341
X	21931868	X_21931868_SNP [dm3] X_22530032_SNP [dm6]	C	T	1.208e^-5	0.552	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	14076344	3R_14076344_SNP [dm3] 3R_18250622_SNP [dm6]	A	C	1.290e^-5	0.576	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14354389	3R_14354389_SNP [dm3] 3R_18528667_SNP [dm6]	G	A	1.371e^-5	0.598	INTRON fru
3R	14352702	3R_14352702_SNP [dm3] 3R_18526980_SNP [dm6]	T	G	1.434e^-5	0.604	INTRON fru
3R	14085173	3R_14085173_SNP [dm3] 3R_18259451_SNP [dm6]	G	A	1.449e^-5	0.604	INTERGENIC
2L	12269000	2L_12269000_SNP [dm3] 2L_12269000_SNP [dm6]	A	G	1.570e^-5	0.64	INTRON aret
3R	14076366	3R_14076366_SNP [dm3] 3R_18250644_SNP [dm6]	T	G	1.728e^-5	0.672	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20084944	2R_20084944_SNP [dm3] 2R_24197421_SNP [dm6]	A	G	1.812e^-5	0.672	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA transposable element FlyBase
3R	14362663	3R_14362663_SNP [dm3] 3R_18536941_SNP [dm6]	A	G	1.825e^-5	0.672	INTRON fru
2R	18954589	2R_18954589_SNP [dm3] 2R_23067066_SNP [dm6]	G	A	1.914e^-5	0.672	SYNONYMOUS_STOP PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12269003	2L_12269003_SNP [dm3] 2L_12269003_SNP [dm6]	T	A	1.927e^-5	0.672	INTRON aret
2R	16647377	2R_16647377_SNP [dm3] 2R_20759872_SNP [dm6]	C	A	1.952e^-5	0.672	INTERGENIC
2R	16647347	2R_16647347_SNP [dm3] 2R_20759842_SNP [dm6]	G	C	1.979e^-5	0.672	INTERGENIC
3R	21047380	3R_21047380_SNP [dm3] 3R_25221658_SNP [dm6]	C	T	1.997e^-5	0.672	UTR_5_PRIME CG11851 DOWNSTREAM CG31103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	20335242	3L_20335242_DEL [dm3] 3L_20342142_DEL [dm6]	TAT	T	2.013e^-5	0.672	UPSTREAM Spn77Bc INTERGENIC	transposable element FlyBase
3R	14075844	3R_14075844_SNP [dm3] 3R_18250122_SNP [dm6]	T	C	2.040e^-5	0.672	UTR_3_PRIME 14-3-3epsilon UPSTREAM CG18598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2912433	2L_2912433_SNP [dm3] 2L_2912433_SNP [dm6]	G	T	2.044e^-5	0.672	INTRON lilli
3L	16877445	3L_16877445_SNP [dm3] 3L_16884345_SNP [dm6]	G	A	2.117e^-5	0.678	INTRON Lmpt
3R	14292149	3R_14292149_SNP [dm3] 3R_18466427_SNP [dm6]	C	A	2.161e^-5	0.678	INTRON fru
2L	16118136	2L_16118136_SNP [dm3] 2L_16118136_SNP [dm6]	C	A	2.171e^-5	0.678	INTERGENIC
2R	20031648	2R_20031648_SNP [dm3] 2R_24144125_SNP [dm6]	G	A	2.377e^-5	0.686	INTRON Dat
2L	2912536	2L_2912536_SNP [dm3] 2L_2912536_SNP [dm6]	G	A	2.388e^-5	0.686	INTRON lilli
3R	14205791	3R_14205791_SNP [dm3] 3R_18380069_SNP [dm6]	T	G	2.427e^-5	0.686	INTRON CG7675
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	2.492e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10479909	2L_10479909_DEL [dm3] 2L_10479909_DEL [dm6]	TAT	T	2.495e^-5	0.686	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2R	13165757	2R_13165757_SNP [dm3] 2R_17278252_SNP [dm6]	A	T	2.529e^-5	0.686	INTRON mbl
2L	12268997	2L_12268997_SNP [dm3] 2L_12268997_SNP [dm6]	C	T	2.555e^-5	0.686	INTRON aret
3R	14071775	3R_14071775_SNP [dm3] 3R_18246053_SNP [dm6]	A	C	2.649e^-5	0.686	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16321482	2R_16321482_SNP [dm3] 2R_20433977_SNP [dm6]	A	C	2.656e^-5	0.686	INTRON CG12484
3L	5940360	3L_5940360_SNP [dm3] 3L_5947260_SNP [dm6]	A	G	2.671e^-5	0.686	INTRON CG33993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16894971	3R_16894971_SNP [dm3] 3R_21069249_SNP [dm6]	T	A	2.701e^-5	0.686	INTRON AnxB9
2R	16647381	2R_16647381_SNP [dm3] 2R_20759876_SNP [dm6]	C	G	2.792e^-5	0.686	INTERGENIC
2R	20753004	2R_20753004_SNP [dm3] 2R_24865481_SNP [dm6]	T	G	2.811e^-5	0.686	INTERGENIC
2R	12476756	2R_12476756_SNP [dm3] 2R_16589251_SNP [dm6]	G	A	2.833e^-5	0.686	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18105515	2R_18105515_SNP [dm3] 2R_22218010_SNP [dm6]	A	T	2.901e^-5	0.686	DOWNSTREAM ari-2 & 1 other INTRON CG30278	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11261087	2R_11261087_SNP [dm3] 2R_15373582_SNP [dm6]	G	A	2.918e^-5	0.686	DOWNSTREAM CR44458 & 1 other EXON CR43276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6234109	2L_6234109_SNP [dm3] 2L_6234109_SNP [dm6]	G	A	2.922e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14042123	3R_14042123_SNP [dm3] 3R_18216401_SNP [dm6]	C	T	2.933e^-5	0.686	SYNONYMOUS_CODING CG14314	TF binding site BDTNP1_TFBS_twi
3R	14287252	3R_14287252_SNP [dm3] 3R_18461530_SNP [dm6]	C	G	2.937e^-5	0.686	INTRON fru
3L	21198647	3L_21198647_SNP [dm3] 3L_21205547_SNP [dm6]	A	C	2.976e^-5	0.686	UPSTREAM CG10512 INTRON CG10512	TF binding site mE1_TFBS_cad
3R	13503889	3R_13503889_SNP [dm3] 3R_17678167_SNP [dm6]	C	T	3.066e^-5	0.686	UTR_5_PRIME alt	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16118090	2L_16118090_SNP [dm3] 2L_16118090_SNP [dm6]	T	A	3.087e^-5	0.686	INTERGENIC
2R	18061988	2R_18061988_SNP [dm3] 2R_22174483_SNP [dm6]	C	T	3.099e^-5	0.686	SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	4767119	3R_4767119_SNP [dm3] 3R_8941397_SNP [dm6]	A	C	3.147e^-5	0.686	INTRON skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16215335	3L_16215335_SNP [dm3] 3L_16222235_SNP [dm6]	C	T	3.152e^-5	0.686	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16771598	3L_16771598_SNP [dm3] 3L_16778498_SNP [dm6]	G	A	3.231e^-5	0.686	SYNONYMOUS_CODING CG13025	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15461223	2R_15461223_SNP [dm3] 2R_19573718_SNP [dm6]	A	G	3.264e^-5	0.686	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16118092	2L_16118092_SNP [dm3] 2L_16118092_SNP [dm6]	G	A	3.286e^-5	0.686	INTERGENIC
3L	12927335	3L_12927335_SNP [dm3] 3L_12934235_SNP [dm6]	C	A	3.323e^-5	0.686	INTERGENIC
3R	14141125	3R_14141125_SNP [dm3] 3R_18315403_SNP [dm6]	A	T	3.343e^-5	0.686	UPSTREAM PKD DOWNSTREAM CG31235 INTERGENIC
2R	3830813	2R_3830813_SNP [dm3] 2R_7943308_SNP [dm6]	A	G	3.431e^-5	0.686	UPSTREAM CG34430 INTRON CG14764
2R	11644123	2R_11644123_SNP [dm3] 2R_15756618_SNP [dm6]	A	T	3.431e^-5	0.686	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13289338	3L_13289338_SNP [dm3] 3L_13296238_SNP [dm6]	C	T	3.434e^-5	0.686	UPSTREAM CR45253 DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	14284734	3R_14284734_SNP [dm3] 3R_18459012_SNP [dm6]	A	T	3.472e^-5	0.686	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5570457	X_5570457_SNP [dm3] X_5676424_SNP [dm6]	T	C	3.484e^-5	0.686	INTRON Tre1	regulatory region REDfly_CRMs
3L	18760113	3L_18760113_SNP [dm3] 3L_18767013_SNP [dm6]	G	C	3.529e^-5	0.686	INTRON ftz-f1
3R	13561295	3R_13561295_SNP [dm3] 3R_17735573_SNP [dm6]	G	T	3.549e^-5	0.686	INTERGENIC
2R	16647383	2R_16647383_SNP [dm3] 2R_20759878_SNP [dm6]	A	G	3.622e^-5	0.693	INTERGENIC
2L	16118104	2L_16118104_SNP [dm3] 2L_16118104_SNP [dm6]	C	G	3.698e^-5	0.7	INTERGENIC
2L	1056172	2L_1056172_INS [dm3] 2L_1056172_INS [dm6]	G	GCACACAGCCAACCAA...	3.827e^-5	0.717	INTRON S	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	4167740	3L_4167740_SNP [dm3] 3L_4167740_SNP [dm6]	G	C	4.005e^-5	0.73	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	15542367	X_15542367_SNP [dm3] X_15648334_SNP [dm6]	T	A	4.028e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16214689	3L_16214689_SNP [dm3] 3L_16221589_SNP [dm6]	G	A	4.036e^-5	0.73	UPSTREAM tRNA:CR32153 INTERGENIC
3L	18277774	3L_18277774_SNP [dm3] 3L_18284674_SNP [dm6]	A	C	4.067e^-5	0.73	INTERGENIC
3L	8399393	3L_8399393_SNP [dm3] 3L_8406293_SNP [dm6]	G	A	4.089e^-5	0.73	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
2R	15028815	2R_15028815_SNP [dm3] 2R_19141310_SNP [dm6]	C	A	4.177e^-5	0.731	UPSTREAM ena DOWNSTREAM CG15111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
2L	17353193	2L_17353193_SNP [dm3] 2L_17353193_SNP [dm6]	T	G	4.205e^-5	0.731	DOWNSTREAM CR43239 INTERGENIC
3L	5325082	3L_5325082_SNP [dm3] 3L_5331982_SNP [dm6]	T	G	4.236e^-5	0.731	INTERGENIC
2L	1056407	2L_1056407_DEL [dm3] 2L_1056407_DEL [dm6]	CC	C	4.321e^-5	0.731	INTRON S	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	14362934	3R_14362934_SNP [dm3] 3R_18537212_SNP [dm6]	C	T	4.369e^-5	0.731	INTRON fru
3R	14364781	3R_14364781_SNP [dm3] 3R_18539059_SNP [dm6]	C	T	4.369e^-5	0.731	INTRON fru
X	5391175	X_5391175_SNP [dm3] X_5497142_SNP [dm6]	C	A	4.370e^-5	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20744207	2R_20744207_SNP [dm3] 2R_24856684_SNP [dm6]	G	A	4.542e^-5	0.747	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	23657586	3R_23657586_SNP [dm3] 3R_27831864_SNP [dm6]	T	G	4.551e^-5	0.747	INTRON CG34353
2L	21134909	2L_21134909_SNP [dm3] 2L_21134909_SNP [dm6]	T	C	4.620e^-5	0.747	NON_SYNONYMOUS_CODING Dap160 DOWNSTREAM Nhe2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2631492	3L_2631492_SNP [dm3] 3L_2631492_SNP [dm6]	C	T	4.704e^-5	0.747	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	12153082	3R_12153082_SNP [dm3] 3R_16327360_SNP [dm6]	T	G	4.782e^-5	0.747	UPSTREAM CG17930 DOWNSTREAM CG17929 INTRON Sulf1
3L	6977723	3L_6977723_SNP [dm3] 3L_6984623_SNP [dm6]	T	C	4.798e^-5	0.747	UPSTREAM CG32388 & 1 other INTERGENIC
3R	14071756	3R_14071756_SNP [dm3] 3R_18246034_SNP [dm6]	A	G	4.818e^-5	0.747	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21288093	X_21288093_SNP [dm3] X_21417066_SNP [dm6]	A	G	4.907e^-5	0.747	INTERGENIC
3R	14111613	3R_14111613_SNP [dm3] 3R_18285891_SNP [dm6]	T	C	4.938e^-5	0.747	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5848187	X_5848187_DEL [dm3] X_5954154_DEL [dm6]	CTG	T	4.966e^-5	0.747	DOWNSTREAM CG6048 INTERGENIC
X	5848191	X_5848191_SNP [dm3] X_5954158_SNP [dm6]	G	A	4.966e^-5	0.747	DOWNSTREAM CG6048 INTERGENIC
2L	12268996	2L_12268996_SNP [dm3] 2L_12268996_SNP [dm6]	G	C	5.077e^-5	0.747	INTRON aret
2R	20352611	2R_20352611_SNP [dm3] 2R_24465088_SNP [dm6]	C	A	5.136e^-5	0.747	INTRON CG13579	regulatory region REDfly_CRMs
3R	14114071	3R_14114071_SNP [dm3] 3R_18288349_SNP [dm6]	T	G	5.144e^-5	0.747	SYNONYMOUS_CODING CG7131 DOWNSTREAM l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14636581	2R_14636581_SNP [dm3] 2R_18749076_SNP [dm6]	C	T	5.188e^-5	0.747	INTRON Hs3st-A
2R	14751660	2R_14751660_SNP [dm3] 2R_18864155_SNP [dm6]	T	C	5.207e^-5	0.747	NON_SYNONYMOUS_CODING CG43070 DOWNSTREAM CG43069 & 1 other INTRON CG43070
3R	14042181	3R_14042181_SNP [dm3] 3R_18216459_SNP [dm6]	A	T	5.271e^-5	0.747	INTRON CG14314	TF binding site mE1_TFBS_cad
2R	16647301	2R_16647301_SNP [dm3] 2R_20759796_SNP [dm6]	G	A	5.343e^-5	0.747	INTERGENIC
X	5236050	X_5236050_SNP [dm3] X_5342017_SNP [dm6]	G	T	5.352e^-5	0.747	INTRON SK	TF binding site mE1_TFBS_HSA
3R	21670835	3R_21670835_SNP [dm3] 3R_25845113_SNP [dm6]	C	G	5.405e^-5	0.747	UPSTREAM CR45654 DOWNSTREAM CR45653 INTERGENIC
3R	14085174	3R_14085174_SNP [dm3] 3R_18259452_SNP [dm6]	A	T	5.468e^-5	0.747	INTERGENIC
2R	16324374	2R_16324374_SNP [dm3] 2R_20436869_SNP [dm6]	A	G	5.511e^-5	0.747	INTRON CG12484
3L	11474369	3L_11474369_SNP [dm3] 3L_11481269_SNP [dm6]	G	A	5.529e^-5	0.747	INTERGENIC
2L	2912227	2L_2912227_DEL [dm3] 2L_2912227_DEL [dm6]	TTAACTT	T	5.550e^-5	0.747	INTRON lilli
X	5391177	X_5391177_SNP [dm3] X_5497144_SNP [dm6]	G	C	5.564e^-5	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5236004	2L_5236004_SNP [dm3] 2L_5236004_SNP [dm6]	A	G	5.584e^-5	0.747	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20392400	3L_20392400_SNP [dm3] 3L_20399300_SNP [dm6]	A	G	5.618e^-5	0.747	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13486704	3L_13486704_SNP [dm3] 3L_13493604_SNP [dm6]	A	T	5.647e^-5	0.747	INTRON Tgi
3L	20391194	3L_20391194_SNP [dm3] 3L_20398094_SNP [dm6]	A	G	5.671e^-5	0.747	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10603281	3L_10603281_INS [dm3] 3L_10610181_INS [dm6]	A	AA	5.686e^-5	0.747	INTERGENIC
3L	6118157	3L_6118157_SNP [dm3] 3L_6125057_SNP [dm6]	T	C	5.698e^-5	0.747	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	14562271	X_14562271_SNP [dm3] X_14668238_SNP [dm6]	C	T	5.826e^-5	0.752	INTERGENIC
3R	21673063	3R_21673063_SNP [dm3] 3R_25847341_SNP [dm6]	T	A	5.833e^-5	0.752	UPSTREAM CR45657 DOWNSTREAM CR45655 EXON CR45656
2R	7829979	2R_7829979_SNP [dm3] 2R_11942474_SNP [dm6]	A	G	5.891e^-5	0.752	INTRON CG13188
3L	15313938	3L_15313938_SNP [dm3] 3L_15320838_SNP [dm6]	C	A	5.899e^-5	0.752	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
2L	10707204	2L_10707204_SNP [dm3] 2L_10707204_SNP [dm6]	A	C	5.939e^-5	0.752	INTRON Lip2	TF binding site mE1_TFBS_inv
3L	18461542	3L_18461542_SNP [dm3] 3L_18468442_SNP [dm6]	A	G	6.050e^-5	0.758	DOWNSTREAM Met75Cb INTERGENIC
3R	13560681	3R_13560681_DEL [dm3] 3R_17734959_DEL [dm6]	TC	T	6.116e^-5	0.758	DOWNSTREAM CG14321 INTERGENIC
2L	16118131	2L_16118131_SNP [dm3] 2L_16118131_SNP [dm6]	C	A	6.153e^-5	0.758	INTERGENIC
3L	10872476	3L_10872476_SNP [dm3] 3L_10879376_SNP [dm6]	G	C	6.180e^-5	0.758	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7645041	2R_7645041_SNP [dm3] 2R_11757536_SNP [dm6]	G	T	6.190e^-5	0.758	UTR_5_PRIME ths
3R	25789590	3R_25789590_SNP [dm3] 3R_29963868_SNP [dm6]	A	C	6.277e^-5	0.759	INTRON TkR99D
2L	16712618	2L_16712618_INS [dm3] 2L_16712618_INS [dm6]	CTGT	AGAAAAAA	6.346e^-5	0.759	INTRON CG31808
3L	18479090	3L_18479090_DEL [dm3] 3L_18485990_DEL [dm6]	ACAACC	A	6.363e^-5	0.759	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
3L	3646419	3L_3646419_SNP [dm3] 3L_3646419_SNP [dm6]	C	T	6.416e^-5	0.759	SYNONYMOUS_CODING dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18753268	3R_18753268_INS [dm3] 3R_22927546_INS [dm6]	C	ATTA	6.443e^-5	0.759	INTRON klg
2R	20057962	2R_20057962_SNP [dm3] 2R_24170439_SNP [dm6]	C	G	6.456e^-5	0.759	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6819063	3R_6819063_SNP [dm3] 3R_10993341_SNP [dm6]	T	A	6.481e^-5	0.759	UTR_5_PRIME CG34114
X	5848193	X_5848193_SNP [dm3] X_5954160_SNP [dm6]	G	A	6.655e^-5	0.772	DOWNSTREAM CG6048 INTERGENIC
3L	4118865	3L_4118865_SNP [dm3] 3L_4118865_SNP [dm6]	T	C	6.948e^-5	0.772	INTRON Chd64
X	5434089	X_5434089_SNP [dm3] X_5540056_SNP [dm6]	A	G	6.971e^-5	0.772	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	5492471	X_5492471_SNP [dm3] X_5598438_SNP [dm6]	A	G	6.988e^-5	0.772	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
X	14561291	X_14561291_SNP [dm3] X_14667258_SNP [dm6]	A	T	7.005e^-5	0.772	INTERGENIC
3L	6977692	3L_6977692_SNP [dm3] 3L_6984592_SNP [dm6]	A	T	7.037e^-5	0.772	UPSTREAM CG32388 & 1 other INTERGENIC
3R	12181819	3R_12181819_SNP [dm3] 3R_16356097_SNP [dm6]	A	G	7.055e^-5	0.772	INTRON CG10311
3L	489076	3L_489076_SNP [dm3] 3L_489076_SNP [dm6]	G	T	7.062e^-5	0.772	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14899377	2R_14899377_SNP [dm3] 2R_19011872_SNP [dm6]	A	G	7.091e^-5	0.772	INTERGENIC
2L	2110938	2L_2110938_SNP [dm3] 2L_2110938_SNP [dm6]	T	C	7.103e^-5	0.772	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	12212629	2L_12212629_SNP [dm3] 2L_12212629_SNP [dm6]	T	C	7.145e^-5	0.772	INTRON aret
2L	12212640	2L_12212640_SNP [dm3] 2L_12212640_SNP [dm6]	G	C	7.145e^-5	0.772	INTRON aret
2L	12212647	2L_12212647_SNP [dm3] 2L_12212647_SNP [dm6]	C	A	7.145e^-5	0.772	INTRON aret
3R	16812587	3R_16812587_SNP [dm3] 3R_20986865_SNP [dm6]	A	G	7.166e^-5	0.772	SYNONYMOUS_CODING CG43446 INTRON Calx
2R	7645025	2R_7645025_SNP [dm3] 2R_11757520_SNP [dm6]	A	T	7.238e^-5	0.775	UTR_5_PRIME ths
3L	16810975	3L_16810975_SNP [dm3] 3L_16817875_SNP [dm6]	C	T	7.282e^-5	0.776	INTRON nudC & 1 other
3R	14363058	3R_14363058_SNP [dm3] 3R_18537336_SNP [dm6]	A	C	7.364e^-5	0.778	INTRON fru
2R	20924668	2R_20924668_SNP [dm3] 2R_25037145_SNP [dm6]	A	C	7.398e^-5	0.778	SYNONYMOUS_CODING Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4385990	3L_4385990_SNP [dm3] 3L_4385990_SNP [dm6]	T	A	7.510e^-5	0.778	INTRON slow
3L	18781149	3L_18781149_SNP [dm3] 3L_18788049_SNP [dm6]	G	T	7.575e^-5	0.778	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20989208	3R_20989208_SNP [dm3] 3R_25163486_SNP [dm6]	C	T	7.594e^-5	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20999389	3R_20999389_SNP [dm3] 3R_25173667_SNP [dm6]	T	C	7.632e^-5	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14899505	2R_14899505_SNP [dm3] 2R_19012000_SNP [dm6]	C	T	7.654e^-5	0.778	INTERGENIC
3R	21588981	3R_21588981_SNP [dm3] 3R_25763259_SNP [dm6]	C	T	7.662e^-5	0.778	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16213927	3L_16213927_SNP [dm3] 3L_16220827_SNP [dm6]	T	C	7.681e^-5	0.778	INTERGENIC
3R	2360122	3R_2360122_DEL [dm3] 3R_6534400_DEL [dm6]	AT	C	7.803e^-5	0.785	INTRON dpr11	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	9157547	3R_9157547_SNP [dm3] 3R_13331825_SNP [dm6]	T	C	7.860e^-5	0.785	INTRON PK2-R2
3R	14317947	3R_14317947_SNP [dm3] 3R_18492225_SNP [dm6]	A	T	7.896e^-5	0.785	INTRON fru
2R	16647242	2R_16647242_INS [dm3] 2R_20759737_INS [dm6]	G	ATAGTGGTCATAAGAGGTCA...	7.955e^-5	0.785	INTERGENIC
3R	9158310	3R_9158310_SNP [dm3] 3R_13332588_SNP [dm6]	C	A	8.065e^-5	0.785	UTR_5_PRIME PK2-R2 INTRON PK2-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16948482	3R_16948482_SNP [dm3] 3R_21122760_SNP [dm6]	G	A	8.148e^-5	0.785	INTRON slmb
3R	24302411	3R_24302411_SNP [dm3] 3R_28476689_SNP [dm6]	A	G	8.173e^-5	0.785	INTERGENIC
3L	17388645	3L_17388645_SNP [dm3] 3L_17395545_SNP [dm6]	A	G	8.220e^-5	0.785	DOWNSTREAM blot INTERGENIC
3L	17388754	3L_17388754_INS [dm3] 3L_17395654_INS [dm6]	C	CGGCTAAACT	8.220e^-5	0.785	DOWNSTREAM blot INTERGENIC
2L	1278988	2L_1278988_SNP [dm3] 2L_1278988_SNP [dm6]	C	A	8.242e^-5	0.785	INTRON robo3	TF binding site mE1_TFBS_HSA
3L	17388715	3L_17388715_DEL [dm3] 3L_17395615_DEL [dm6]	TTTCGAT	T	8.251e^-5	0.785	DOWNSTREAM blot INTERGENIC
2R	13422526	2R_13422526_SNP [dm3] 2R_17535021_SNP [dm6]	G	A	8.258e^-5	0.785	UTR_5_PRIME Patronin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	21989078	X_21989078_SNP [dm3] X_22587242_SNP [dm6]	C	T	8.355e^-5	0.785	INTRON Cda4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14027736	3R_14027736_SNP [dm3] 3R_18202014_SNP [dm6]	C	T	8.411e^-5	0.785	INTRON CG7985
X	11754302	X_11754302_SNP [dm3] X_11860269_SNP [dm6]	C	A	8.425e^-5	0.785	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
X	7316261	X_7316261_SNP [dm3] X_7422228_SNP [dm6]	G	A	8.454e^-5	0.785	DOWNSTREAM CG9657 INTERGENIC
2R	20623731	2R_20623731_SNP [dm3] 2R_24736208_SNP [dm6]	T	A	8.457e^-5	0.785	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	12152991	3R_12152991_SNP [dm3] 3R_16327269_SNP [dm6]	C	A	8.546e^-5	0.788	UTR_3_PRIME CG17929 UPSTREAM CG17930 INTRON Sulf1
X	8016187	X_8016187_DEL [dm3] X_8122154_DEL [dm6]	TAC	T	8.577e^-5	0.788	INTRON cyr
2R	16647265	2R_16647265_SNP [dm3] 2R_20759760_SNP [dm6]	T	G	8.689e^-5	0.788	INTERGENIC
3L	13131391	3L_13131391_SNP [dm3] 3L_13138291_SNP [dm6]	T	C	8.704e^-5	0.788	INTERGENIC
3R	11300436	3R_11300436_SNP [dm3] 3R_15474714_SNP [dm6]	T	C	8.716e^-5	0.788	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6328766	2L_6328766_SNP [dm3] 2L_6328766_SNP [dm6]	G	A	8.807e^-5	0.788	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
2L	2238330	2L_2238330_SNP [dm3] 2L_2238330_SNP [dm6]	G	A	8.856e^-5	0.788	UTR_3_PRIME Tengl2 UPSTREAM Tengl3
2L	6186612	2L_6186612_SNP [dm3] 2L_6186612_SNP [dm6]	T	A	8.912e^-5	0.788	INTRON CG34380	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13575821	3R_13575821_SNP [dm3] 3R_17750099_SNP [dm6]	C	T	8.974e^-5	0.788	DOWNSTREAM TyrR INTERGENIC
3L	13486700	3L_13486700_INS [dm3] 3L_13493600_INS [dm6]	A	ATA	9.000e^-5	0.788	INTRON Tgi
3R	8878298	3R_8878298_SNP [dm3] 3R_13052576_SNP [dm6]	A	C	9.003e^-5	0.788	INTRON pic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25975629	3R_25975629_SNP [dm3] 3R_30149907_SNP [dm6]	T	G	9.024e^-5	0.788	UPSTREAM AdoR INTERGENIC
3L	13277662	3L_13277662_SNP [dm3] 3L_13284562_SNP [dm6]	A	C	9.065e^-5	0.788	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
3R	15012186	3R_15012186_SNP [dm3] 3R_19186464_SNP [dm6]	T	A	9.076e^-5	0.788	INTRON CG31475
3R	21109500	3R_21109500_SNP [dm3] 3R_25283778_SNP [dm6]	C	T	9.157e^-5	0.788	SYNONYMOUS_CODING CG31300 DOWNSTREAM CG11892
3R	20236508	3R_20236508_SNP [dm3] 3R_24410786_SNP [dm6]	A	T	9.164e^-5	0.788	INTRON nAChRalpha1	TF binding site mE1_TFBS_inv
2R	8499879	2R_8499879_SNP [dm3] 2R_12612374_SNP [dm6]	T	A	9.252e^-5	0.791	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	20115588	3R_20115588_SNP [dm3] 3R_24289866_SNP [dm6]	C	G	9.287e^-5	0.791	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	16775957	3R_16775957_SNP [dm3] 3R_20950235_SNP [dm6]	A	T	9.374e^-5	0.795	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14017102	3R_14017102_SNP [dm3] 3R_18191380_SNP [dm6]	T	C	9.446e^-5	0.796	NON_SYNONYMOUS_CODING CG14313 DOWNSTREAM MED17	TF binding site mE1_TFBS_cad
3R	14076317	3R_14076317_SNP [dm3] 3R_18250595_SNP [dm6]	G	A	9.616e^-5	0.796	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12153856	3R_12153856_SNP [dm3] 3R_16328134_SNP [dm6]	T	C	9.682e^-5	0.796	SYNONYMOUS_CODING CG17930 DOWNSTREAM CG17929 INTRON Sulf1	TF binding site mE1_TFBS_cad
2R	16307358	2R_16307358_SNP [dm3] 2R_20419853_SNP [dm6]	G	C	9.698e^-5	0.796	INTERGENIC
2R	19925394	2R_19925394_SNP [dm3] 2R_24037871_SNP [dm6]	A	G	9.706e^-5	0.796	START_GAINED Not11 UTR_5_PRIME Not11 UPSTREAM IntS1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17388647	3L_17388647_SNP [dm3] 3L_17395547_SNP [dm6]	G	A	9.714e^-5	0.796	DOWNSTREAM blot INTERGENIC
2R	16310091	2R_16310091_SNP [dm3] 2R_20422586_SNP [dm6]	T	A	9.720e^-5	0.796	INTERGENIC
2R	16310093	2R_16310093_SNP [dm3] 2R_20422588_SNP [dm6]	A	C	9.720e^-5	0.796	INTERGENIC
2R	17037967	2R_17037967_SNP [dm3] 2R_21150462_SNP [dm6]	G	A	9.836e^-5	0.802	SYNONYMOUS_CODING CG30389
3R	21673396	3R_21673396_SNP [dm3] 3R_25847674_SNP [dm6]	T	A	9.950e^-5	0.804	UPSTREAM CR45657 & 1 other DOWNSTREAM CR45655 INTERGENIC
2R	10950859	2R_10950859_SNP [dm3] 2R_15063354_SNP [dm6]	C	T	9.992e^-5	0.804	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2110932	2L_2110932_SNP [dm3] 2L_2110932_SNP [dm6]	T	C	1.004e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14891481	2R_14891481_SNP [dm3] 2R_19003976_SNP [dm6]	A	T	1.004e^-4	0.804	DOWNSTREAM tn INTRON tn
3R	14082703	3R_14082703_SNP [dm3] 3R_18256981_SNP [dm6]	G	A	1.012e^-4	0.804	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
3L	2427372	3L_2427372_SNP [dm3] 3L_2427372_SNP [dm6]	G	T	1.013e^-4	0.804	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14067602	3R_14067602_SNP [dm3] 3R_18241880_SNP [dm6]	A	C	1.019e^-4	0.806	SYNONYMOUS_CODING CG7156 UPSTREAM 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10872479	3L_10872479_SNP [dm3] 3L_10879379_SNP [dm6]	A	G	1.024e^-4	0.806	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21588971	3R_21588971_DEL [dm3] 3R_25763249_DEL [dm6]	AAAAAAAC	A	1.035e^-4	0.811	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14987254	3R_14987254_SNP [dm3] 3R_19161532_SNP [dm6]	G	C	1.040e^-4	0.812	SYNONYMOUS_CODING CG42359 INTRON CG42358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	1.048e^-4	0.814	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	2425941	3L_2425941_SNP [dm3] 3L_2425941_SNP [dm6]	G	T	1.053e^-4	0.814	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12268989	2L_12268989_MNP [dm3] 2L_12268989_MNP [dm6]	ACAACA	TTGTGT	1.057e^-4	0.814	INTRON aret
3L	1368383	3L_1368383_SNP [dm3] 3L_1368383_SNP [dm6]	G	A	1.060e^-4	0.814	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20994237	3R_20994237_SNP [dm3] 3R_25168515_SNP [dm6]	G	C	1.067e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	904058	2L_904058_SNP [dm3] 2L_904058_SNP [dm6]	G	A	1.071e^-4	0.815	EXON CR45261
3L	5950482	3L_5950482_SNP [dm3] 3L_5957382_SNP [dm6]	T	A	1.076e^-4	0.815	INTERGENIC
3R	21063279	3R_21063279_SNP [dm3] 3R_25237557_SNP [dm6]	C	A	1.085e^-4	0.815	UPSTREAM CG11852 INTERGENIC
3L	12288311	3L_12288311_SNP [dm3] 3L_12295211_SNP [dm6]	G	A	1.087e^-4	0.815	INTRON CG4328
X	5363757	X_5363757_SNP [dm3] X_5469724_SNP [dm6]	A	G	1.091e^-4	0.815	INTRON SPR
X	11754388	X_11754388_SNP [dm3] X_11860355_SNP [dm6]	A	C	1.093e^-4	0.815	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
3L	12053415	3L_12053415_SNP [dm3] 3L_12060315_SNP [dm6]	T	G	1.097e^-4	0.815	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9451034	3L_9451034_SNP [dm3] 3L_9457934_SNP [dm6]	C	T	1.100e^-4	0.815	UTR_5_PRIME CG3552 UPSTREAM CG3437 INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5559945	3L_5559945_INS [dm3] 3L_5566845_INS [dm6]	T	TGA	1.126e^-4	0.831	DOWNSTREAM Msr-110 & 1 other INTERGENIC
3R	14150211	3R_14150211_DEL [dm3] 3R_18324489_DEL [dm6]	TT	T	1.138e^-4	0.832	INTRON CG31235
X	17677264	X_17677264_SNP [dm3] X_17783231_SNP [dm6]	C	A	1.174e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14097586	X_14097586_SNP [dm3] X_14203553_SNP [dm6]	A	G	1.185e^-4	0.832	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM l_1_G0469	TF binding site BDTNP1_TFBS_dl
2R	10718707	2R_10718707_SNP [dm3] 2R_14831202_SNP [dm6]	C	T	1.187e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_sens
3R	23548031	3R_23548031_SNP [dm3] 3R_27722309_SNP [dm6]	C	T	1.191e^-4	0.832	INTERGENIC
X	12188903	X_12188903_SNP [dm3] X_12294870_SNP [dm6]	G	A	1.193e^-4	0.832	INTRON Ten-a
2R	17588907	2R_17588907_SNP [dm3] 2R_21701402_SNP [dm6]	G	T	1.195e^-4	0.832	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	24901933	3R_24901933_SNP [dm3] 3R_29076211_SNP [dm6]	C	T	1.196e^-4	0.832	INTRON CG11873	TF binding site mE1_TFBS_cad
X	11754717	X_11754717_SNP [dm3] X_11860684_SNP [dm6]	A	G	1.198e^-4	0.832	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
2R	15465744	2R_15465744_SNP [dm3] 2R_19578239_SNP [dm6]	T	C	1.205e^-4	0.832	INTRON sm
2L	4064501	2L_4064501_SNP [dm3] 2L_4064501_SNP [dm6]	T	A	1.207e^-4	0.832	INTRON ed
3L	20392216	3L_20392216_SNP [dm3] 3L_20399116_SNP [dm6]	C	T	1.211e^-4	0.832	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6329409	3L_6329409_DEL [dm3] 3L_6336309_DEL [dm6]	GGGACTCGGACAAACCAAAC...	G	1.217e^-4	0.832	INTRON CG13300	TF binding site mE1_TFBS_inv
3L	17392529	3L_17392529_SNP [dm3] 3L_17399429_SNP [dm6]	A	T	1.218e^-4	0.832	DOWNSTREAM noe INTRON blot
2R	10219814	2R_10219814_SNP [dm3] 2R_14332309_SNP [dm6]	A	G	1.225e^-4	0.832	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	19428197	X_19428197_SNP [dm3] X_19534164_SNP [dm6]	A	G	1.226e^-4	0.832	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21672962	3R_21672962_SNP [dm3] 3R_25847240_SNP [dm6]	A	G	1.232e^-4	0.832	UPSTREAM CR45657 DOWNSTREAM CR45654 & 1 other EXON CR45656
3R	5124944	3R_5124944_SNP [dm3] 3R_9299222_SNP [dm6]	A	G	1.233e^-4	0.832	INTRON CG8861
3R	13813981	3R_13813981_SNP [dm3] 3R_17988259_SNP [dm6]	G	C	1.236e^-4	0.832	INTRON cpo
3R	23610409	3R_23610409_SNP [dm3] 3R_27784687_SNP [dm6]	T	A	1.239e^-4	0.832	INTRON CG34353
3R	23657466	3R_23657466_DEL [dm3] 3R_27831744_DEL [dm6]	CC	C	1.239e^-4	0.832	INTRON CG34353
X	21991779	X_21991779_SNP [dm3] X_22589943_SNP [dm6]	G	A	1.248e^-4	0.832	INTRON Cda4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10633552	3R_10633552_SNP [dm3] 3R_14807830_SNP [dm6]	G	T	1.253e^-4	0.832	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1559781	2L_1559781_SNP [dm3] 2L_1559781_SNP [dm6]	C	A	1.258e^-4	0.832	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12053453	3L_12053453_SNP [dm3] 3L_12060353_SNP [dm6]	G	C	1.261e^-4	0.832	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9201554	3R_9201554_SNP [dm3] 3R_13375832_SNP [dm6]	A	C	1.265e^-4	0.832	INTRON CG9813	transposable element FlyBase
3R	2262341	3R_2262341_SNP [dm3] 3R_6436619_SNP [dm6]	A	C	1.278e^-4	0.832	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23539365	3R_23539365_DEL [dm3] 3R_27713643_DEL [dm6]	AT	A	1.289e^-4	0.832	INTERGENIC
2R	12392100	2R_12392100_SNP [dm3] 2R_16504595_SNP [dm6]	T	C	1.290e^-4	0.832	INTRON Sema-2a
3L	16812195	3L_16812195_SNP [dm3] 3L_16819095_SNP [dm6]	T	C	1.291e^-4	0.832	SYNONYMOUS_CODING nudC INTRON CG13024
3R	9201545	3R_9201545_SNP [dm3] 3R_13375823_SNP [dm6]	C	T	1.296e^-4	0.832	INTRON CG9813	transposable element FlyBase
3R	14179581	3R_14179581_SNP [dm3] 3R_18353859_SNP [dm6]	T	C	1.314e^-4	0.832	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21045619	3R_21045619_SNP [dm3] 3R_25219897_SNP [dm6]	G	C	1.316e^-4	0.832	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3R	11904380	3R_11904380_SNP [dm3] 3R_16078658_SNP [dm6]	G	A	1.317e^-4	0.832	DOWNSTREAM CG32855 INTRON Mhcl
3L	13461704	3L_13461704_SNP [dm3] 3L_13468604_SNP [dm6]	C	A	1.326e^-4	0.832	SYNONYMOUS_CODING CG10089
3R	14203965	3R_14203965_SNP [dm3] 3R_18378243_SNP [dm6]	T	C	1.339e^-4	0.832	SYNONYMOUS_CODING CG7675	TF binding site mE1_TFBS_cad
3R	14085283	3R_14085283_SNP [dm3] 3R_18259561_SNP [dm6]	C	A	1.340e^-4	0.832	INTERGENIC
3R	14085299	3R_14085299_SNP [dm3] 3R_18259577_SNP [dm6]	A	T	1.340e^-4	0.832	INTERGENIC
2L	15806824	2L_15806824_SNP [dm3] 2L_15806824_SNP [dm6]	C	A	1.348e^-4	0.832	DOWNSTREAM CR44602 INTERGENIC
3L	18453915	3L_18453915_SNP [dm3] 3L_18460815_SNP [dm6]	C	A	1.348e^-4	0.832	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14182168	3R_14182168_SNP [dm3] 3R_18356446_SNP [dm6]	T	G	1.349e^-4	0.832	INTRON CG15803
3R	4809886	3R_4809886_SNP [dm3] 3R_8984164_SNP [dm6]	C	G	1.352e^-4	0.832	UPSTREAM CG11970 INTRON RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	4193771	X_4193771_SNP [dm3] X_4299738_SNP [dm6]	T	G	1.352e^-4	0.832	DOWNSTREAM CG12692 INTERGENIC
2R	18062500	2R_18062500_SNP [dm3] 2R_22174995_SNP [dm6]	A	C	1.364e^-4	0.832	UTR_5_PRIME CG6758 UPSTREAM CG3045 EXON CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16213365	3L_16213365_INS [dm3] 3L_16220265_INS [dm6]	G	GATTTTAATTTTCAGGAAGT...	1.373e^-4	0.832	INTERGENIC
3R	20994253	3R_20994253_SNP [dm3] 3R_25168531_SNP [dm6]	G	A	1.381e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	17380516	3L_17380516_SNP [dm3] 3L_17387416_SNP [dm6]	A	G	1.392e^-4	0.832	INTRON CG13731	TF binding site mE1_TFBS_inv
X	19428196	X_19428196_SNP [dm3] X_19534163_SNP [dm6]	C	A	1.396e^-4	0.832	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11857143	2L_11857143_SNP [dm3] 2L_11857143_SNP [dm6]	C	A	1.400e^-4	0.832	INTRON Pde1c
3L	13461638	3L_13461638_SNP [dm3] 3L_13468538_SNP [dm6]	A	T	1.403e^-4	0.832	SYNONYMOUS_CODING CG10089
3L	9693596	3L_9693596_SNP [dm3] 3L_9700496_SNP [dm6]	T	A	1.403e^-4	0.832	DOWNSTREAM CG6761 & 1 other INTERGENIC
3R	8982155	3R_8982155_SNP [dm3] 3R_13156433_SNP [dm6]	C	A	1.405e^-4	0.832	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	21990294	X_21990294_SNP [dm3] X_22588458_SNP [dm6]	A	C	1.412e^-4	0.832	SPLICE_SITE_REGION Cda4 INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15818184	2L_15818184_SNP [dm3] 2L_15818184_SNP [dm6]	A	T	1.415e^-4	0.832	INTERGENIC
3R	23458162	3R_23458162_SNP [dm3] 3R_27632440_SNP [dm6]	G	C	1.416e^-4	0.832	SYNONYMOUS_CODING Tusp	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2912539	2L_2912539_SNP [dm3] 2L_2912539_SNP [dm6]	C	A	1.420e^-4	0.832	INTRON lilli
2R	19136549	2R_19136549_SNP [dm3] 2R_23249026_SNP [dm6]	T	G	1.427e^-4	0.832	INTERGENIC
3R	12948613	3R_12948613_SNP [dm3] 3R_17122891_SNP [dm6]	T	C	1.429e^-4	0.832	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3R	9062076	3R_9062076_SNP [dm3] 3R_13236354_SNP [dm6]	G	T	1.436e^-4	0.832	INTRON Ace
3R	14187274	3R_14187274_SNP [dm3] 3R_18361552_SNP [dm6]	G	C	1.447e^-4	0.832	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3R	12271487	3R_12271487_SNP [dm3] 3R_16445765_SNP [dm6]	C	G	1.457e^-4	0.832	UTR_3_PRIME Pak3 DOWNSTREAM CG14882 & 1 other
2R	11524493	2R_11524493_INS [dm3] 2R_15636988_INS [dm6]	G	CA	1.457e^-4	0.832	INTRON CG42524
2R	20151304	2R_20151304_SNP [dm3] 2R_24263781_SNP [dm6]	C	A	1.460e^-4	0.832	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20151319	2R_20151319_SNP [dm3] 2R_24263796_SNP [dm6]	T	A	1.460e^-4	0.832	SPLICE_SITE_REGION CG3376 INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23539430	3R_23539430_SNP [dm3] 3R_27713708_SNP [dm6]	C	G	1.461e^-4	0.832	INTERGENIC
2R	3801142	2R_3801142_SNP [dm3] 2R_7913637_SNP [dm6]	A	T	1.464e^-4	0.832	INTRON CG30377
3R	23542455	3R_23542455_SNP [dm3] 3R_27716733_SNP [dm6]	G	A	1.467e^-4	0.832	INTERGENIC
3R	23668339	3R_23668339_SNP [dm3] 3R_27842617_SNP [dm6]	A	G	1.467e^-4	0.832	INTRON CG34353
3L	20144259	3L_20144259_DEL [dm3] 3L_20151159_DEL [dm6]	TCT	T	1.468e^-4	0.832	UTR_3_PRIME CG42674
X	6870247	X_6870247_SNP [dm3] X_6976214_SNP [dm6]	T	C	1.471e^-4	0.832	INTRON ogre	TF binding site mE1_TFBS_HSA
X	11754371	X_11754371_SNP [dm3] X_11860338_SNP [dm6]	C	G	1.473e^-4	0.832	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	1.474e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	3062373	X_3062373_SNP [dm3] X_3168340_SNP [dm6]	T	G	1.479e^-4	0.832	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5325064	3L_5325064_SNP [dm3] 3L_5331964_SNP [dm6]	T	A	1.492e^-4	0.832	INTERGENIC
2R	7645014	2R_7645014_SNP [dm3] 2R_11757509_SNP [dm6]	C	T	1.492e^-4	0.832	UTR_5_PRIME ths
2L	11239562	2L_11239562_SNP [dm3] 2L_11239562_SNP [dm6]	C	T	1.497e^-4	0.832	INTRON ab
3R	23536632	3R_23536632_SNP [dm3] 3R_27710910_SNP [dm6]	G	A	1.498e^-4	0.832	DOWNSTREAM CG12877 INTERGENIC
3R	23536656	3R_23536656_SNP [dm3] 3R_27710934_SNP [dm6]	C	T	1.498e^-4	0.832	DOWNSTREAM CG12877 INTERGENIC
2L	15250094	2L_15250094_INS [dm3] 2L_15250094_INS [dm6]	T	TC	1.499e^-4	0.832	INTRON dao
2L	11239568	2L_11239568_SNP [dm3] 2L_11239568_SNP [dm6]	C	T	1.501e^-4	0.832	INTRON ab
X	12014371	X_12014371_SNP [dm3] X_12120338_SNP [dm6]	T	C	1.501e^-4	0.832	INTRON Ten-a
3L	4695034	3L_4695034_SNP [dm3] 3L_4695034_SNP [dm6]	T	A	1.508e^-4	0.832	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10154781	2L_10154781_SNP [dm3] 2L_10154781_SNP [dm6]	C	T	1.508e^-4	0.832	SYNONYMOUS_CODING CG4839 INTRON CG44153
3R	23634859	3R_23634859_SNP [dm3] 3R_27809137_SNP [dm6]	G	T	1.510e^-4	0.832	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	11524479	2R_11524479_SNP [dm3] 2R_15636974_SNP [dm6]	G	T	1.533e^-4	0.832	INTRON CG42524
X	6957154	X_6957154_SNP [dm3] X_7063121_SNP [dm6]	C	T	1.534e^-4	0.832	INTRON CG12541
3R	23531796	3R_23531796_SNP [dm3] 3R_27706074_SNP [dm6]	A	G	1.536e^-4	0.832	UTR_5_PRIME CG12428 INTRON CG12428
3R	23610794	3R_23610794_SNP [dm3] 3R_27785072_SNP [dm6]	T	C	1.536e^-4	0.832	INTRON CG34353
3L	18456577	3L_18456577_SNP [dm3] 3L_18463477_SNP [dm6]	A	T	1.537e^-4	0.832	UPSTREAM CG4306 INTERGENIC
X	5507374	X_5507374_SNP [dm3] X_5613341_SNP [dm6]	A	G	1.537e^-4	0.832	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
X	11073560	X_11073560_SNP [dm3] X_11179527_SNP [dm6]	C	T	1.538e^-4	0.832	INTERGENIC
3L	13292951	3L_13292951_SNP [dm3] 3L_13299851_SNP [dm6]	G	A	1.547e^-4	0.832	UTR_3_PRIME CG43147 UPSTREAM CG42481
3R	23539417	3R_23539417_SNP [dm3] 3R_27713695_SNP [dm6]	A	G	1.551e^-4	0.832	INTERGENIC
3R	23539421	3R_23539421_SNP [dm3] 3R_27713699_SNP [dm6]	T	A	1.551e^-4	0.832	INTERGENIC
3L	1270179	3L_1270179_SNP [dm3] 3L_1270179_SNP [dm6]	T	A	1.553e^-4	0.832	INTRON CG9134
2R	11524435	2R_11524435_SNP [dm3] 2R_15636930_SNP [dm6]	A	G	1.555e^-4	0.832	INTRON CG42524
2R	10695689	2R_10695689_SNP [dm3] 2R_14808184_SNP [dm6]	T	A	1.558e^-4	0.832	UPSTREAM hui INTERGENIC	regulatory region REDfly_CRMs
3L	15542162	3L_15542162_DEL [dm3] 3L_15549062_DEL [dm6]	GTCTAAACTACAGACTTTAG...	G	1.568e^-4	0.833	INTRON CrebA	TF binding site BDTNP1_TFBS_hb
2L	7343075	2L_7343075_SNP [dm3] 2L_7343075_SNP [dm6]	C	T	1.584e^-4	0.833	INTRON Wnt6
2L	7343080	2L_7343080_SNP [dm3] 2L_7343080_SNP [dm6]	A	G	1.584e^-4	0.833	INTRON Wnt6
3R	9270443	3R_9270443_SNP [dm3] 3R_13444721_SNP [dm6]	C	A	1.587e^-4	0.833	UPSTREAM CR45679 INTERGENIC
3R	21588983	3R_21588983_SNP [dm3] 3R_25763261_SNP [dm6]	A	T	1.597e^-4	0.833	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23531877	3R_23531877_SNP [dm3] 3R_27706155_SNP [dm6]	T	C	1.599e^-4	0.833	UTR_5_PRIME CG12428 UPSTREAM CG12877 INTRON CG12428	TF binding site BDTNP1_TFBS_dl
2L	12212624	2L_12212624_SNP [dm3] 2L_12212624_SNP [dm6]	T	C	1.602e^-4	0.833	INTRON aret
3R	23660305	3R_23660305_SNP [dm3] 3R_27834583_SNP [dm6]	T	G	1.603e^-4	0.833	INTRON CG34353
2L	6202069	2L_6202069_SNP [dm3] 2L_6202069_SNP [dm6]	T	G	1.604e^-4	0.833	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	15002154	3R_15002154_SNP [dm3] 3R_19176432_SNP [dm6]	C	T	1.604e^-4	0.833	UPSTREAM CG14282 INTERGENIC
3R	21231950	3R_21231950_SNP [dm3] 3R_25406228_SNP [dm6]	G	A	1.617e^-4	0.837	INTRON Fur1	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8833148	2R_8833148_SNP [dm3] 2R_12945643_SNP [dm6]	A	T	1.626e^-4	0.838	INTRON Mdr49	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7448396	3L_7448396_SNP [dm3] 3L_7455296_SNP [dm6]	C	G	1.636e^-4	0.838	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
3R	23539422	3R_23539422_SNP [dm3] 3R_27713700_SNP [dm6]	A	G	1.641e^-4	0.838	INTERGENIC
3L	12294071	3L_12294071_SNP [dm3] 3L_12300971_SNP [dm6]	G	A	1.645e^-4	0.838	UPSTREAM CR44550 INTERGENIC
X	16149243	X_16149243_SNP [dm3] X_16255210_SNP [dm6]	C	A	1.650e^-4	0.838	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23539515	3R_23539515_SNP [dm3] 3R_27713793_SNP [dm6]	C	T	1.651e^-4	0.838	INTERGENIC
3R	6444732	3R_6444732_SNP [dm3] 3R_10619010_SNP [dm6]	G	T	1.657e^-4	0.838	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17348637	2R_17348637_INS [dm3] 2R_21461132_INS [dm6]	C	CC	1.659e^-4	0.838	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
3L	13286654	3L_13286654_SNP [dm3] 3L_13293554_SNP [dm6]	C	T	1.667e^-4	0.838	INTERGENIC
3R	14365356	3R_14365356_SNP [dm3] 3R_18539634_SNP [dm6]	A	G	1.671e^-4	0.838	INTRON fru
2R	11137789	2R_11137789_SNP [dm3] 2R_15250284_SNP [dm6]	A	G	1.672e^-4	0.838	INTRON scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11137790	2R_11137790_SNP [dm3] 2R_15250285_SNP [dm6]	G	A	1.672e^-4	0.838	INTRON scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9563296	3L_9563296_INS [dm3] 3L_9570196_INS [dm6]	C	CC	1.676e^-4	0.838	INTRON CG42673
2L	12212568	2L_12212568_SNP [dm3] 2L_12212568_SNP [dm6]	A	G	1.701e^-4	0.844	INTRON aret
3R	21042470	3R_21042470_SNP [dm3] 3R_25216748_SNP [dm6]	G	A	1.724e^-4	0.844	INTRON CG31106
3R	23657478	3R_23657478_SNP [dm3] 3R_27831756_SNP [dm6]	G	A	1.735e^-4	0.844	INTRON CG34353
3L	5739968	3L_5739968_SNP [dm3] 3L_5746868_SNP [dm6]	T	A	1.751e^-4	0.844	UTR_3_PRIME sif DOWNSTREAM sif
3R	3838102	3R_3838102_SNP [dm3] 3R_8012380_SNP [dm6]	C	G	1.754e^-4	0.844	NON_SYNONYMOUS_CODING CG10435	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
X	9594431	X_9594431_DEL [dm3] X_9700398_DEL [dm6]	TT	T	1.757e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6993969	3R_6993969_SNP [dm3] 3R_11168247_SNP [dm6]	C	G	1.758e^-4	0.844	UPSTREAM Ugt86De DOWNSTREAM Ugt35b INTERGENIC
3L	16228370	3L_16228370_SNP [dm3] 3L_16235270_SNP [dm6]	T	C	1.770e^-4	0.844	SPLICE_SITE_REGION l_3_72Dp INTRON l_3_72Dp
2L	12212614	2L_12212614_SNP [dm3] 2L_12212614_SNP [dm6]	A	G	1.777e^-4	0.844	INTRON aret
2R	1389077	2R_1389077_SNP [dm3] 2R_5501572_SNP [dm6]	T	A	1.780e^-4	0.844	INTRON CG30438	transposable element FlyBase
3L	10785022	3L_10785022_SNP [dm3] 3L_10791922_SNP [dm6]	T	C	1.783e^-4	0.844	INTERGENIC
3L	8603734	3L_8603734_SNP [dm3] 3L_8610634_SNP [dm6]	G	A	1.784e^-4	0.844	INTRON CG6282
2L	16712467	2L_16712467_SNP [dm3] 2L_16712467_SNP [dm6]	C	T	1.785e^-4	0.844	INTRON CG31808
3R	13813982	3R_13813982_SNP [dm3] 3R_17988260_SNP [dm6]	C	G	1.788e^-4	0.844	INTRON cpo
X	5511297	X_5511297_SNP [dm3] X_5617264_SNP [dm6]	G	A	1.788e^-4	0.844	UPSTREAM CG34434 INTRON RhoGAP5A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9941975	3L_9941975_SNP [dm3] 3L_9948875_SNP [dm6]	G	T	1.788e^-4	0.844	INTRON CG34356
2L	12212611	2L_12212611_SNP [dm3] 2L_12212611_SNP [dm6]	A	T	1.792e^-4	0.844	INTRON aret
X	21990292	X_21990292_SNP [dm3] X_22588456_SNP [dm6]	C	T	1.807e^-4	0.844	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18953871	2R_18953871_SNP [dm3] 2R_23066348_SNP [dm6]	T	C	1.807e^-4	0.844	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18277793	3L_18277793_SNP [dm3] 3L_18284693_SNP [dm6]	C	A	1.811e^-4	0.844	INTERGENIC
3R	14204881	3R_14204881_SNP [dm3] 3R_18379159_SNP [dm6]	T	G	1.811e^-4	0.844	INTRON CG7675
X	15432276	X_15432276_SNP [dm3] X_15538243_SNP [dm6]	C	T	1.814e^-4	0.844	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5511294	X_5511294_SNP [dm3] X_5617261_SNP [dm6]	G	T	1.815e^-4	0.844	UPSTREAM CG34434 INTRON RhoGAP5A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	22702507	3R_22702507_SNP [dm3] 3R_26876785_SNP [dm6]	T	C	1.816e^-4	0.844	UTR_3_PRIME ro DOWNSTREAM ro & 1 other INTRON CG5500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2L	9749538	2L_9749538_SNP [dm3] 2L_9749538_SNP [dm6]	C	G	1.818e^-4	0.844	INTRON Cyp4e3
3R	14071904	3R_14071904_DEL [dm3] 3R_18246182_DEL [dm6]	TCTTTGT	T	1.827e^-4	0.844	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5942403	3L_5942403_SNP [dm3] 3L_5949303_SNP [dm6]	T	A	1.830e^-4	0.844	INTRON CG33993
X	21930065	X_21930065_SNP [dm3] X_22528229_SNP [dm6]	C	G	1.833e^-4	0.844	NON_SYNONYMOUS_CODING CG17600
2R	11142277	2R_11142277_SNP [dm3] 2R_15254772_SNP [dm6]	T	C	1.838e^-4	0.844	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10461607	3L_10461607_SNP [dm3] 3L_10468507_SNP [dm6]	C	T	1.839e^-4	0.844	UTR_3_PRIME S-Lap3 DOWNSTREAM S-Lap3
2R	7645039	2R_7645039_SNP [dm3] 2R_11757534_SNP [dm6]	A	C	1.845e^-4	0.844	UTR_5_PRIME ths
3L	13442106	3L_13442106_SNP [dm3] 3L_13449006_SNP [dm6]	G	A	1.855e^-4	0.844	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
X	16149242	X_16149242_SNP [dm3] X_16255209_SNP [dm6]	G	A	1.855e^-4	0.844	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11524489	2R_11524489_SNP [dm3] 2R_15636984_SNP [dm6]	T	A	1.857e^-4	0.844	INTRON CG42524
2R	1252186	2R_1252186_SNP [dm3] 2R_5364681_SNP [dm6]	T	C	1.864e^-4	0.844	EXON CR42646
3R	21433888	3R_21433888_SNP [dm3] 3R_25608166_SNP [dm6]	C	T	1.865e^-4	0.844	UTR_3_PRIME msi INTRON ymp
3R	23657317	3R_23657317_SNP [dm3] 3R_27831595_SNP [dm6]	G	A	1.865e^-4	0.844	INTRON CG34353
3L	1103244	3L_1103244_SNP [dm3] 3L_1103244_SNP [dm6]	G	T	1.865e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9678204	3L_9678204_SNP [dm3] 3L_9685104_SNP [dm6]	G	T	1.870e^-4	0.844	UPSTREAM CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad
2L	12212619	2L_12212619_SNP [dm3] 2L_12212619_SNP [dm6]	T	A	1.877e^-4	0.844	INTRON aret
X	12036156	X_12036156_SNP [dm3] X_12142123_SNP [dm6]	G	A	1.883e^-4	0.844	INTRON Ten-a
X	12036158	X_12036158_SNP [dm3] X_12142125_SNP [dm6]	T	A	1.883e^-4	0.844	INTRON Ten-a
3R	14204885	3R_14204885_SNP [dm3] 3R_18379163_SNP [dm6]	C	T	1.887e^-4	0.844	INTRON CG7675
3L	5325046	3L_5325046_SNP [dm3] 3L_5331946_SNP [dm6]	C	T	1.889e^-4	0.844	INTERGENIC
3L	16877490	3L_16877490_SNP [dm3] 3L_16884390_SNP [dm6]	T	C	1.899e^-4	0.844	INTRON Lmpt
3L	9056200	3L_9056200_SNP [dm3] 3L_9063100_SNP [dm6]	G	A	1.904e^-4	0.844	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1
3R	8995160	3R_8995160_SNP [dm3] 3R_13169438_SNP [dm6]	C	A	1.911e^-4	0.844	INTERGENIC
2R	18063090	2R_18063090_SNP [dm3] 2R_22175585_SNP [dm6]	C	T	1.912e^-4	0.844	SYNONYMOUS_CODING CG6758 UPSTREAM CG3045 EXON CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2R	18061097	2R_18061097_SNP [dm3] 2R_22173592_SNP [dm6]	C	T	1.915e^-4	0.844	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
2L	16118042	2L_16118042_INS [dm3] 2L_16118042_INS [dm6]	T	TGGGT	1.915e^-4	0.844	INTERGENIC
3R	20236509	3R_20236509_SNP [dm3] 3R_24410787_SNP [dm6]	T	G	1.923e^-4	0.845	INTRON nAChRalpha1	TF binding site mE1_TFBS_inv
3L	4638220	3L_4638220_SNP [dm3] 3L_4638220_SNP [dm6]	G	C	1.928e^-4	0.845	INTRON axo
3L	16758681	3L_16758681_SNP [dm3] 3L_16765581_SNP [dm6]	T	A	1.934e^-4	0.845	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13804183	2L_13804183_DEL [dm3] 2L_13804183_DEL [dm6]	AAA	A	1.943e^-4	0.845	INTRON CAH1
X	12151789	X_12151789_SNP [dm3] X_12257756_SNP [dm6]	C	A	1.943e^-4	0.845	INTRON Ten-a
2L	15051321	2L_15051321_SNP [dm3] 2L_15051321_SNP [dm6]	G	A	1.946e^-4	0.845	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
3R	25957770	3R_25957770_SNP [dm3] 3R_30132048_SNP [dm6]	T	A	1.947e^-4	0.845	NON_SYNONYMOUS_CODING CG31029 DOWNSTREAM Tpi	TF binding site BDTNP1_TFBS_twi
2R	11956978	2R_11956978_SNP [dm3] 2R_16069473_SNP [dm6]	G	C	1.954e^-4	0.846	INTERGENIC
2R	14685878	2R_14685878_SNP [dm3] 2R_18798373_SNP [dm6]	G	A	1.959e^-4	0.846	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo
2R	7644890	2R_7644890_SNP [dm3] 2R_11757385_SNP [dm6]	C	T	1.968e^-4	0.847	UTR_5_PRIME ths
X	18071166	X_18071166_SNP [dm3] X_18177133_SNP [dm6]	G	C	1.969e^-4	0.847	UPSTREAM Frq2 INTERGENIC
2R	10004243	2R_10004243_SNP [dm3] 2R_14116738_SNP [dm6]	A	T	1.976e^-4	0.848	INTRON Prosap
2L	2015465	2L_2015465_SNP [dm3] 2L_2015465_SNP [dm6]	C	T	1.985e^-4	0.85	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
X	21987788	X_21987788_SNP [dm3] X_22585952_SNP [dm6]	G	C	1.996e^-4	0.85	INTRON Cda4
3L	17940750	3L_17940750_SNP [dm3] 3L_17947650_SNP [dm6]	C	T	2.001e^-4	0.85	EXON CR45393
X	11754715	X_11754715_SNP [dm3] X_11860682_SNP [dm6]	C	G	2.008e^-4	0.85	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
3L	9331919	3L_9331919_SNP [dm3] 3L_9338819_SNP [dm6]	T	A	2.009e^-4	0.85	UTR_5_PRIME PGRP-LC DOWNSTREAM PGRP-LA
3R	14204893	3R_14204893_SNP [dm3] 3R_18379171_SNP [dm6]	C	T	2.011e^-4	0.85	INTRON CG7675
2L	16751963	2L_16751963_DEL [dm3] 2L_16751963_DEL [dm6]	TT	T	2.012e^-4	0.85	UTR_3_PRIME CG17912
2L	10478398	2L_10478398_SNP [dm3] 2L_10478398_SNP [dm6]	C	A	2.021e^-4	0.85	INTRON RluA-2
3L	12187814	3L_12187814_SNP [dm3] 3L_12194714_SNP [dm6]	T	C	2.024e^-4	0.85	INTERGENIC
2R	17436478	2R_17436478_SNP [dm3] 2R_21548973_SNP [dm6]	C	T	2.028e^-4	0.85	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
3L	9693595	3L_9693595_SNP [dm3] 3L_9700495_SNP [dm6]	G	T	2.033e^-4	0.85	DOWNSTREAM CG6761 & 1 other INTERGENIC
3R	23520682	3R_23520682_SNP [dm3] 3R_27694960_SNP [dm6]	T	C	2.040e^-4	0.85	SYNONYMOUS_CODING Acp98AB UPSTREAM CG43320 DOWNSTREAM CG43319
3R	23520703	3R_23520703_SNP [dm3] 3R_27694981_SNP [dm6]	T	A	2.040e^-4	0.85	UTR_3_PRIME Acp98AB UPSTREAM CG43320 DOWNSTREAM CG43319
2R	14099019	2R_14099019_SNP [dm3] 2R_18211514_SNP [dm6]	G	A	2.058e^-4	0.853	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9201558	3R_9201558_SNP [dm3] 3R_13375836_SNP [dm6]	C	A	2.067e^-4	0.853	INTRON CG9813	transposable element FlyBase
3L	2631064	3L_2631064_SNP [dm3] 3L_2631064_SNP [dm6]	G	A	2.067e^-4	0.853	UPSTREAM Pxn & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14354416	3R_14354416_SNP [dm3] 3R_18528694_SNP [dm6]	C	T	2.072e^-4	0.853	INTRON fru
2L	3246312	2L_3246312_SNP [dm3] 2L_3246312_SNP [dm6]	G	A	2.072e^-4	0.853	INTERGENIC
3L	4408835	3L_4408835_SNP [dm3] 3L_4408835_SNP [dm6]	T	A	2.083e^-4	0.853	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10338193	2L_10338193_SNP [dm3] 2L_10338193_SNP [dm6]	A	G	2.085e^-4	0.853	INTRON GATAd
3R	13679153	3R_13679153_SNP [dm3] 3R_17853431_SNP [dm6]	A	T	2.088e^-4	0.853	INTRON tinc	TF binding site mE1_TFBS_inv
2R	11524478	2R_11524478_SNP [dm3] 2R_15636973_SNP [dm6]	G	T	2.104e^-4	0.853	INTRON CG42524
2L	10478405	2L_10478405_SNP [dm3] 2L_10478405_SNP [dm6]	G	A	2.108e^-4	0.853	INTRON RluA-2
2R	7326762	2R_7326762_SNP [dm3] 2R_11439257_SNP [dm6]	C	T	2.110e^-4	0.853	INTRON CG7777
2R	20744125	2R_20744125_SNP [dm3] 2R_24856602_SNP [dm6]	C	T	2.112e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	5946629	3L_5946629_SNP [dm3] 3L_5953529_SNP [dm6]	G	C	2.112e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2110931	2L_2110931_SNP [dm3] 2L_2110931_SNP [dm6]	T	A	2.123e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	23657440	3R_23657440_SNP [dm3] 3R_27831718_SNP [dm6]	C	T	2.125e^-4	0.853	INTRON CG34353
3R	9004040	3R_9004040_SNP [dm3] 3R_13178318_SNP [dm6]	A	G	2.125e^-4	0.853	INTERGENIC
2R	14003269	2R_14003269_SNP [dm3] 2R_18115764_SNP [dm6]	A	G	2.132e^-4	0.853	INTERGENIC
2L	16120186	2L_16120186_DEL [dm3] 2L_16120186_DEL [dm6]	TTTTCTAT	T	2.132e^-4	0.853	INTERGENIC
X	19113908	X_19113908_SNP [dm3] X_19219875_SNP [dm6]	T	A	2.136e^-4	0.853	UPSTREAM CG7884 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23531889	3R_23531889_SNP [dm3] 3R_27706167_SNP [dm6]	T	A	2.138e^-4	0.853	UTR_5_PRIME CG12428 UPSTREAM CG12877 INTRON CG12428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23551208	3R_23551208_SNP [dm3] 3R_27725486_SNP [dm6]	C	T	2.148e^-4	0.853	INTERGENIC
3R	23551307	3R_23551307_SNP [dm3] 3R_27725585_SNP [dm6]	G	T	2.148e^-4	0.853	INTERGENIC
3L	21398748	3L_21398748_SNP [dm3] 3L_21405648_SNP [dm6]	T	A	2.166e^-4	0.856	INTRON rgn & 1 other
X	7980142	X_7980142_SNP [dm3] X_8086109_SNP [dm6]	C	A	2.168e^-4	0.856	DOWNSTREAM CR45535 INTRON CG2256
3L	18089336	3L_18089336_SNP [dm3] 3L_18096236_SNP [dm6]	T	C	2.170e^-4	0.856	INTRON CG13698
2L	10338192	2L_10338192_SNP [dm3] 2L_10338192_SNP [dm6]	T	C	2.181e^-4	0.857	INTRON GATAd
3L	18732656	3L_18732656_SNP [dm3] 3L_18739556_SNP [dm6]	G	T	2.183e^-4	0.857	INTERGENIC
2R	10367967	2R_10367967_SNP [dm3] 2R_14480462_SNP [dm6]	A	T	2.186e^-4	0.857	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5959422	2L_5959422_SNP [dm3] 2L_5959422_SNP [dm6]	C	T	2.191e^-4	0.857	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2R	16412721	2R_16412721_SNP [dm3] 2R_20525216_SNP [dm6]	T	C	2.194e^-4	0.857	UPSTREAM CR44650 INTERGENIC
2R	18918736	2R_18918736_SNP [dm3] 2R_23031213_SNP [dm6]	T	C	2.204e^-4	0.859	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25950239	3R_25950239_SNP [dm3] 3R_30124517_SNP [dm6]	C	T	2.211e^-4	0.859	SYNONYMOUS_CODING CG45073	TF binding site mE1_TFBS_inv
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	2.214e^-4	0.859	INTRON klg
X	21987445	X_21987445_SNP [dm3] X_22585609_SNP [dm6]	T	C	2.219e^-4	0.859	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5942461	3L_5942461_SNP [dm3] 3L_5949361_SNP [dm6]	C	G	2.225e^-4	0.859	INTRON CG33993
2R	8505476	2R_8505476_SNP [dm3] 2R_12617971_SNP [dm6]	C	T	2.231e^-4	0.859	INTRON Galphaq & 1 other
3L	18760853	3L_18760853_SNP [dm3] 3L_18767753_SNP [dm6]	A	T	2.241e^-4	0.859	INTRON ftz-f1
2R	12476537	2R_12476537_SNP [dm3] 2R_16589032_SNP [dm6]	G	A	2.241e^-4	0.859	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5952157	3L_5952157_SNP [dm3] 3L_5959057_SNP [dm6]	G	A	2.243e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9007052	3R_9007052_SNP [dm3] 3R_13181330_SNP [dm6]	A	G	2.245e^-4	0.859	START_GAINED CG8138 UTR_5_PRIME CG8138
2R	12390109	2R_12390109_SNP [dm3] 2R_16502604_SNP [dm6]	A	G	2.262e^-4	0.862	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12476929	2R_12476929_SNP [dm3] 2R_16589424_SNP [dm6]	G	T	2.266e^-4	0.862	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5942393	3L_5942393_SNP [dm3] 3L_5949293_SNP [dm6]	T	C	2.270e^-4	0.862	INTRON CG33993
3L	23239572	3L_23239572_SNP [dm3] 3L_23246472_SNP [dm6]	A	G	2.275e^-4	0.862	INTRON nAChRalpha4
3R	9062443	3R_9062443_SNP [dm3] 3R_13236721_SNP [dm6]	G	A	2.278e^-4	0.862	INTRON Ace
X	5848174	X_5848174_SNP [dm3] X_5954141_SNP [dm6]	A	C	2.286e^-4	0.862	DOWNSTREAM CG6048 INTERGENIC
3L	14439971	3L_14439971_SNP [dm3] 3L_14446871_SNP [dm6]	C	T	2.290e^-4	0.862	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	9090179	2L_9090179_SNP [dm3] 2L_9090179_SNP [dm6]	T	A	2.290e^-4	0.862	DOWNSTREAM Toll-4 INTERGENIC
3L	17388835	3L_17388835_SNP [dm3] 3L_17395735_SNP [dm6]	C	A	2.310e^-4	0.866	DOWNSTREAM blot INTERGENIC
3R	5436955	3R_5436955_SNP [dm3] 3R_9611233_SNP [dm6]	G	A	2.319e^-4	0.866	INTRON CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21002743	3R_21002743_SNP [dm3] 3R_25177021_SNP [dm6]	C	G	2.326e^-4	0.866	INTRON lobo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11457320	2L_11457320_SNP [dm3] 2L_11457320_SNP [dm6]	A	G	2.338e^-4	0.866	INTERGENIC
X	22017139	X_22017139_SNP [dm3] X_22615303_SNP [dm6]	C	T	2.359e^-4	0.866	INTRON Cda4
X	10144956	X_10144956_SNP [dm3] X_10250923_SNP [dm6]	A	T	2.364e^-4	0.866	INTRON Hk
2L	10338189	2L_10338189_SNP [dm3] 2L_10338189_SNP [dm6]	A	G	2.373e^-4	0.866	INTRON GATAd
3L	17392543	3L_17392543_SNP [dm3] 3L_17399443_SNP [dm6]	A	G	2.377e^-4	0.866	DOWNSTREAM noe INTRON blot
3R	14041805	3R_14041805_SNP [dm3] 3R_18216083_SNP [dm6]	G	C	2.380e^-4	0.866	UPSTREAM CG14314 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483250	3L_15483250_SNP [dm3] 3L_15490150_SNP [dm6]	G	C	2.382e^-4	0.866	INTERGENIC
3R	25979339	3R_25979339_SNP [dm3] 3R_30153617_SNP [dm6]	C	T	2.385e^-4	0.866	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	4064484	2L_4064484_SNP [dm3] 2L_4064484_SNP [dm6]	C	G	2.391e^-4	0.866	INTRON ed
3R	14173883	3R_14173883_SNP [dm3] 3R_18348161_SNP [dm6]	C	A	2.404e^-4	0.866	INTRON CG15803
3R	14907223	3R_14907223_SNP [dm3] 3R_19081501_SNP [dm6]	G	T	2.407e^-4	0.866	INTRON cdi
3L	16213397	3L_16213397_SNP [dm3] 3L_16220297_SNP [dm6]	A	G	2.409e^-4	0.866	INTERGENIC
3L	15774177	3L_15774177_SNP [dm3] 3L_15781077_SNP [dm6]	C	A	2.410e^-4	0.866	INTERGENIC
3R	26158180	3R_26158180_SNP [dm3] 3R_30332458_SNP [dm6]	A	G	2.412e^-4	0.866	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	8999342	3R_8999342_INS [dm3] 3R_13173620_INS [dm6]	T	TGAAAGATAAA...	2.418e^-4	0.866	INTERGENIC
3R	14187684	3R_14187684_SNP [dm3] 3R_18361962_SNP [dm6]	A	G	2.419e^-4	0.866	UPSTREAM CG7669 DOWNSTREAM CR45634 INTERGENIC
2L	8095145	2L_8095145_SNP [dm3] 2L_8095145_SNP [dm6]	A	G	2.430e^-4	0.866	INTRON Bsg
3R	14201489	3R_14201489_SNP [dm3] 3R_18375767_SNP [dm6]	G	C	2.439e^-4	0.866	EXON CR44946
3R	8993455	3R_8993455_SNP [dm3] 3R_13167733_SNP [dm6]	C	T	2.440e^-4	0.866	INTERGENIC
X	21987262	X_21987262_SNP [dm3] X_22585426_SNP [dm6]	A	G	2.442e^-4	0.866	INTRON Cda4
2L	7155072	2L_7155072_SNP [dm3] 2L_7155072_SNP [dm6]	C	G	2.452e^-4	0.866	INTRON Pvf3
3L	10034537	3L_10034537_SNP [dm3] 3L_10041437_SNP [dm6]	C	A	2.465e^-4	0.866	DOWNSTREAM dpr6 INTRON dpr6
3R	10507293	3R_10507293_SNP [dm3] 3R_14681571_SNP [dm6]	G	A	2.472e^-4	0.866	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16565376	X_16565376_SNP [dm3] X_16671343_SNP [dm6]	C	T	2.473e^-4	0.866	INTRON CG13012	TF binding site mE1_TFBS_HSA
3R	12949055	3R_12949055_SNP [dm3] 3R_17123333_SNP [dm6]	G	A	2.475e^-4	0.866	UPSTREAM cher INTRON cher
X	12221002	X_12221002_SNP [dm3] X_12326969_SNP [dm6]	T	C	2.480e^-4	0.866	INTRON Ten-a
2R	3698979	2R_3698979_SNP [dm3] 2R_7811474_SNP [dm6]	A	G	2.480e^-4	0.866	SYNONYMOUS_CODING CG1550	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14297728	3R_14297728_SNP [dm3] 3R_18472006_SNP [dm6]	T	C	2.482e^-4	0.866	INTRON fru
2L	7839501	2L_7839501_SNP [dm3] 2L_7839501_SNP [dm6]	G	T	2.491e^-4	0.866	UPSTREAM CG14537 DOWNSTREAM CR43100 INTERGENIC
2R	17436476	2R_17436476_INS [dm3] 2R_21548971_INS [dm6]	G	GTATGT	2.495e^-4	0.866	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
3R	25795113	3R_25795113_SNP [dm3] 3R_29969391_SNP [dm6]	C	G	2.503e^-4	0.866	UTR_5_PRIME TkR99D
3L	11533687	3L_11533687_SNP [dm3] 3L_11540587_SNP [dm6]	C	T	2.505e^-4	0.866	INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11814354	2R_11814354_SNP [dm3] 2R_15926849_SNP [dm6]	C	T	2.506e^-4	0.866	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2R	16308702	2R_16308702_SNP [dm3] 2R_20421197_SNP [dm6]	A	G	2.509e^-4	0.866	INTERGENIC
3R	14084992	3R_14084992_SNP [dm3] 3R_18259270_SNP [dm6]	G	A	2.510e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	6118143	3L_6118143_SNP [dm3] 3L_6125043_SNP [dm6]	C	A	2.510e^-4	0.866	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	3696207	2R_3696207_SNP [dm3] 2R_7808702_SNP [dm6]	A	T	2.512e^-4	0.866	SYNONYMOUS_CODING sax	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19478112	2R_19478112_SNP [dm3] 2R_23590589_SNP [dm6]	T	G	2.512e^-4	0.866	INTRON apt
2L	10917291	2L_10917291_SNP [dm3] 2L_10917291_SNP [dm6]	A	G	2.518e^-4	0.866	UTR_3_PRIME dpr2 DOWNSTREAM dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17143527	3L_17143527_SNP [dm3] 3L_17150427_SNP [dm6]	A	T	2.521e^-4	0.866	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5970001	3L_5970001_SNP [dm3] 3L_5976901_SNP [dm6]	G	C	2.529e^-4	0.866	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	14354010	3R_14354010_SNP [dm3] 3R_18528288_SNP [dm6]	A	G	2.532e^-4	0.866	INTRON fru
2R	13744483	2R_13744483_SNP [dm3] 2R_17856978_SNP [dm6]	T	C	2.536e^-4	0.866	SYNONYMOUS_CODING olf186-F INTRON olf186-F	TF binding site mE1_TFBS_chinmo
2L	10479901	2L_10479901_SNP [dm3] 2L_10479901_SNP [dm6]	A	G	2.544e^-4	0.866	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3R	9087227	3R_9087227_INS [dm3] 3R_13261505_INS [dm6]	T	TC	2.547e^-4	0.866	INTRON CG11686
3L	9941947	3L_9941947_SNP [dm3] 3L_9948847_SNP [dm6]	A	C	2.548e^-4	0.866	INTRON CG34356
3L	15696722	3L_15696722_SNP [dm3] 3L_15703622_SNP [dm6]	T	C	2.551e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20135690	3L_20135690_SNP [dm3] 3L_20142590_SNP [dm6]	T	C	2.552e^-4	0.866	INTERGENIC
2R	7644798	2R_7644798_SNP [dm3] 2R_11757293_SNP [dm6]	G	A	2.574e^-4	0.866	UTR_5_PRIME ths
3R	14586233	3R_14586233_SNP [dm3] 3R_18760511_SNP [dm6]	T	A	2.577e^-4	0.866	SYNONYMOUS_CODING CG7720
3L	6611708	3L_6611708_SNP [dm3] 3L_6618608_SNP [dm6]	C	A	2.578e^-4	0.866	UTR_3_PRIME CG8398 DOWNSTREAM CG8398
3R	21146468	3R_21146468_SNP [dm3] 3R_25320746_SNP [dm6]	G	T	2.579e^-4	0.866	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
3R	14284725	3R_14284725_DEL [dm3] 3R_18459003_DEL [dm6]	TCGA	T	2.580e^-4	0.866	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6233922	2L_6233922_SNP [dm3] 2L_6233922_SNP [dm6]	C	A	2.584e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20151396	2R_20151396_SNP [dm3] 2R_24263873_SNP [dm6]	T	G	2.585e^-4	0.866	SYNONYMOUS_CODING CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14354013	3R_14354013_SNP [dm3] 3R_18528291_SNP [dm6]	T	A	2.591e^-4	0.866	INTRON fru
2R	16307276	2R_16307276_SNP [dm3] 2R_20419771_SNP [dm6]	A	T	2.595e^-4	0.866	INTERGENIC
2R	13908412	2R_13908412_SNP [dm3] 2R_18020907_SNP [dm6]	A	G	2.597e^-4	0.866	SYNONYMOUS_CODING CG10910 DOWNSTREAM CG5084
2L	16118149	2L_16118149_SNP [dm3] 2L_16118149_SNP [dm6]	T	G	2.599e^-4	0.866	INTERGENIC
2R	18099026	2R_18099026_SNP [dm3] 2R_22211521_SNP [dm6]	T	C	2.604e^-4	0.866	SYNONYMOUS_CODING CG11291 UPSTREAM CG3264
3R	17003051	3R_17003051_DEL [dm3] 3R_21177329_DEL [dm6]	TATAAAACTAAACAGG...	C	2.606e^-4	0.866	INTRON SNF4Agamma
3L	10872609	3L_10872609_SNP [dm3] 3L_10879509_SNP [dm6]	G	A	2.606e^-4	0.866	NON_SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	6638529	3R_6638529_SNP [dm3] 3R_10812807_SNP [dm6]	G	T	2.610e^-4	0.866	SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693 DOWNSTREAM CG14693
2R	17386233	2R_17386233_SNP [dm3] 2R_21498728_SNP [dm6]	A	T	2.613e^-4	0.866	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC
3R	9566325	3R_9566325_SNP [dm3] 3R_13740603_SNP [dm6]	A	C	2.615e^-4	0.866	INTRON CG34383
3L	14004432	3L_14004432_SNP [dm3] 3L_14011332_SNP [dm6]	C	T	2.619e^-4	0.866	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13138768	3R_13138768_SNP [dm3] 3R_17313046_SNP [dm6]	T	G	2.632e^-4	0.868	INTERGENIC
2L	2021900	2L_2021900_SNP [dm3] 2L_2021900_SNP [dm6]	T	C	2.641e^-4	0.87	INTRON CG4238
3L	15248330	3L_15248330_SNP [dm3] 3L_15255230_SNP [dm6]	T	C	2.647e^-4	0.87	INTERGENIC
3R	27418851	3R_27418851_SNP [dm3] 3R_31593129_SNP [dm6]	A	T	2.651e^-4	0.87	NON_SYNONYMOUS_CODING CG1774 DOWNSTREAM CG1638
2R	20060721	2R_20060721_SNP [dm3] 2R_24173198_SNP [dm6]	C	T	2.656e^-4	0.87	SYNONYMOUS_CODING CG3328 DOWNSTREAM mRpS17	TF binding site mE1_TFBS_chinmo
2L	7150108	2L_7150108_SNP [dm3] 2L_7150108_SNP [dm6]	A	T	2.665e^-4	0.872	INTRON Pvf3
3R	2348384	3R_2348384_SNP [dm3] 3R_6522662_SNP [dm6]	T	A	2.678e^-4	0.875	INTERGENIC
3R	8174761	3R_8174761_SNP [dm3] 3R_12349039_SNP [dm6]	A	T	2.690e^-4	0.875	UTR_3_PRIME CG10038
3L	17384902	3L_17384902_SNP [dm3] 3L_17391802_SNP [dm6]	A	C	2.705e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_kn
3L	17384911	3L_17384911_SNP [dm3] 3L_17391811_SNP [dm6]	C	T	2.705e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_kn
3L	2748414	3L_2748414_SNP [dm3] 3L_2748414_SNP [dm6]	T	C	2.710e^-4	0.875	INTRON Mrtf
3R	21002335	3R_21002335_SNP [dm3] 3R_25176613_SNP [dm6]	A	C	2.713e^-4	0.875	INTRON lobo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	18626636	2R_18626636_SNP [dm3] 2R_22739131_SNP [dm6]	T	C	2.736e^-4	0.875	INTRON jbug
3L	9389760	3L_9389760_SNP [dm3] 3L_9396660_SNP [dm6]	G	C	2.741e^-4	0.875	INTRON CG4080
3R	4810852	3R_4810852_SNP [dm3] 3R_8985130_SNP [dm6]	T	C	2.744e^-4	0.875	NON_SYNONYMOUS_CODING CG11970 UPSTREAM RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12294077	3L_12294077_SNP [dm3] 3L_12300977_SNP [dm6]	A	G	2.744e^-4	0.875	UPSTREAM CR44550 INTERGENIC
2L	10309193	2L_10309193_SNP [dm3] 2L_10309193_SNP [dm6]	A	G	2.750e^-4	0.875	INTRON Cdk5alpha
X	11754584	X_11754584_SNP [dm3] X_11860551_SNP [dm6]	T	C	2.750e^-4	0.875	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
3R	2818704	3R_2818704_SNP [dm3] 3R_6992982_SNP [dm6]	T	C	2.762e^-4	0.875	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13809437	3R_13809437_SNP [dm3] 3R_17983715_SNP [dm6]	G	C	2.765e^-4	0.875	INTRON cpo
2L	5902794	2L_5902794_SNP [dm3] 2L_5902794_SNP [dm6]	T	C	2.766e^-4	0.875	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19428181	X_19428181_INS [dm3] X_19534148_INS [dm6]	G	GACCCAACTG	2.768e^-4	0.875	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14085183	3R_14085183_SNP [dm3] 3R_18259461_SNP [dm6]	T	A	2.772e^-4	0.875	INTERGENIC
3L	12898069	3L_12898069_SNP [dm3] 3L_12904969_SNP [dm6]	G	A	2.772e^-4	0.875	INTERGENIC
2L	1752114	2L_1752114_SNP [dm3] 2L_1752114_SNP [dm6]	A	G	2.775e^-4	0.875	UTR_5_PRIME CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12149395	3R_12149395_SNP [dm3] 3R_16323673_SNP [dm6]	T	C	2.778e^-4	0.875	SPLICE_SITE_REGION CG6901 INTRON Sulf1 & 1 other
3R	20802981	3R_20802981_SNP [dm3] 3R_24977259_SNP [dm6]	G	T	2.782e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9062139	3R_9062139_SNP [dm3] 3R_13236417_SNP [dm6]	T	A	2.783e^-4	0.875	INTRON Ace
3R	14182293	3R_14182293_DEL [dm3] 3R_18356571_DEL [dm6]	ATGCTTGGA	A	2.793e^-4	0.875	INTRON CG15803
3R	23657436	3R_23657436_SNP [dm3] 3R_27831714_SNP [dm6]	A	G	2.796e^-4	0.875	INTRON CG34353
3L	11378114	3L_11378114_SNP [dm3] 3L_11385014_SNP [dm6]	A	G	2.801e^-4	0.875	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	6992103	3R_6992103_SNP [dm3] 3R_11166381_SNP [dm6]	A	C	2.806e^-4	0.875	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
3R	14071917	3R_14071917_SNP [dm3] 3R_18246195_SNP [dm6]	G	A	2.808e^-4	0.875	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5264101	3L_5264101_SNP [dm3] 3L_5271001_SNP [dm6]	C	T	2.814e^-4	0.875	INTRON shep
3L	13131421	3L_13131421_SNP [dm3] 3L_13138321_SNP [dm6]	C	T	2.815e^-4	0.875	INTERGENIC
3L	18233116	3L_18233116_SNP [dm3] 3L_18240016_SNP [dm6]	A	C	2.818e^-4	0.875	INTERGENIC
2L	1752089	2L_1752089_SNP [dm3] 2L_1752089_SNP [dm6]	C	T	2.819e^-4	0.875	UTR_5_PRIME CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17894272	2R_17894272_SNP [dm3] 2R_22006767_SNP [dm6]	G	A	2.824e^-4	0.875	INTRON CG34370
3R	9270583	3R_9270583_SNP [dm3] 3R_13444861_SNP [dm6]	C	G	2.833e^-4	0.876	UPSTREAM CR45679 INTERGENIC
3R	21232994	3R_21232994_SNP [dm3] 3R_25407272_SNP [dm6]	T	C	2.842e^-4	0.878	INTRON Fur1
3R	20992193	3R_20992193_SNP [dm3] 3R_25166471_SNP [dm6]	A	T	2.850e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11262029	3R_11262029_SNP [dm3] 3R_15436307_SNP [dm6]	C	G	2.857e^-4	0.879	INTERGENIC
3L	17116479	3L_17116479_SNP [dm3] 3L_17123379_SNP [dm6]	C	A	2.863e^-4	0.879	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	1752886	2L_1752886_INS [dm3] 2L_1752886_INS [dm6]	T	TTATCTTA	2.864e^-4	0.879	UPSTREAM CG17712 DOWNSTREAM CG17648 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20989278	3R_20989278_SNP [dm3] 3R_25163556_SNP [dm6]	T	C	2.871e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20254883	X_20254883_SNP [dm3] X_20383856_SNP [dm6]	G	A	2.880e^-4	0.879	EXON CR34311
2L	13278213	2L_13278213_SNP [dm3] 2L_13278213_SNP [dm6]	A	G	2.884e^-4	0.879	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11524476	2R_11524476_SNP [dm3] 2R_15636971_SNP [dm6]	T	G	2.887e^-4	0.879	INTRON CG42524
2R	16056251	2R_16056251_SNP [dm3] 2R_20168746_SNP [dm6]	C	T	2.890e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18972106	3R_18972106_SNP [dm3] 3R_23146384_SNP [dm6]	C	T	2.902e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20136233	3L_20136233_DEL [dm3] 3L_20143133_DEL [dm6]	TGACCTTATTACTACGGAAT...	T	2.910e^-4	0.879	INTERGENIC
3R	14069240	3R_14069240_SNP [dm3] 3R_18243518_SNP [dm6]	C	T	2.923e^-4	0.879	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
2L	12274194	2L_12274194_DEL [dm3] 2L_12274194_DEL [dm6]	TT	T	2.924e^-4	0.879	INTRON aret
3R	9172788	3R_9172788_SNP [dm3] 3R_13347066_SNP [dm6]	T	C	2.924e^-4	0.879	INTERGENIC
X	21988674	X_21988674_SNP [dm3] X_22586838_SNP [dm6]	G	A	2.925e^-4	0.879	INTRON Cda4	TF binding site BDTNP1_TFBS_dl
X	6114438	X_6114438_SNP [dm3] X_6220405_SNP [dm6]	T	C	2.929e^-4	0.879	UTR_5_PRIME Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	14299361	3R_14299361_SNP [dm3] 3R_18473639_SNP [dm6]	G	A	2.937e^-4	0.879	INTRON fru	TF binding site BDTNP1_TFBS_dl
3L	11378101	3L_11378101_SNP [dm3] 3L_11385001_SNP [dm6]	G	C	2.939e^-4	0.879	UPSTREAM CR42755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	19508251	2R_19508251_SNP [dm3] 2R_23620728_SNP [dm6]	A	T	2.948e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2352153	2L_2352153_DEL [dm3] 2L_2352153_DEL [dm6]	GG	G	2.959e^-4	0.879	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
2R	12475806	2R_12475806_SNP [dm3] 2R_16588301_SNP [dm6]	A	G	2.960e^-4	0.879	INTRON CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20774830	2R_20774830_SNP [dm3] 2R_24887307_SNP [dm6]	G	C	2.961e^-4	0.879	NON_SYNONYMOUS_CODING NKAIN UTR_3_PRIME NKAIN DOWNSTREAM NKAIN
2R	11324652	2R_11324652_SNP [dm3] 2R_15437147_SNP [dm6]	T	C	2.961e^-4	0.879	INTRON CG43729
2R	18937611	2R_18937611_SNP [dm3] 2R_23050088_SNP [dm6]	C	T	2.969e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21990221	X_21990221_SNP [dm3] X_22588385_SNP [dm6]	T	C	2.972e^-4	0.879	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	3853168	3R_3853168_DEL [dm3] 3R_8027446_DEL [dm6]	AAATATTTGCA...	A	2.976e^-4	0.879	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23536509	3R_23536509_SNP [dm3] 3R_27710787_SNP [dm6]	G	C	2.980e^-4	0.879	UTR_3_PRIME CG12877
2L	13224963	2L_13224963_SNP [dm3] 2L_13224963_SNP [dm6]	A	G	2.982e^-4	0.879	NON_SYNONYMOUS_CODING CG15480 DOWNSTREAM CG16812	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13292673	3L_13292673_SNP [dm3] 3L_13299573_SNP [dm6]	G	T	2.982e^-4	0.879	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3L	14406149	3L_14406149_SNP [dm3] 3L_14413049_SNP [dm6]	A	C	3.001e^-4	0.881	UTR_3_PRIME bbg DOWNSTREAM CG3919
3L	14062478	3L_14062478_SNP [dm3] 3L_14069378_SNP [dm6]	A	G	3.008e^-4	0.881	UTR_3_PRIME CG32138 INTRON CG32138
2R	11324654	2R_11324654_SNP [dm3] 2R_15437149_SNP [dm6]	C	A	3.011e^-4	0.881	INTRON CG43729
2L	2128201	2L_2128201_SNP [dm3] 2L_2128201_SNP [dm6]	G	A	3.027e^-4	0.881	UTR_3_PRIME CG4259 DOWNSTREAM CG4259
3R	25980173	3R_25980173_SNP [dm3] 3R_30154451_SNP [dm6]	C	G	3.032e^-4	0.881	INTRON CG11498	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13486698	3L_13486698_SNP [dm3] 3L_13493598_SNP [dm6]	T	C	3.034e^-4	0.881	INTRON Tgi
2L	436558	2L_436558_SNP [dm3] 2L_436558_SNP [dm6]	G	T	3.039e^-4	0.881	INTRON ex
2L	15818206	2L_15818206_SNP [dm3] 2L_15818206_SNP [dm6]	A	T	3.044e^-4	0.881	INTERGENIC
2R	18061909	2R_18061909_SNP [dm3] 2R_22174404_SNP [dm6]	A	T	3.056e^-4	0.881	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	9155961	3R_9155961_SNP [dm3] 3R_13330239_SNP [dm6]	T	C	3.060e^-4	0.881	SYNONYMOUS_CODING PK2-R2
3R	8992260	3R_8992260_SNP [dm3] 3R_13166538_SNP [dm6]	C	A	3.064e^-4	0.881	INTERGENIC
3R	21146429	3R_21146429_SNP [dm3] 3R_25320707_SNP [dm6]	T	A	3.065e^-4	0.881	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	3.066e^-4	0.881	INTRON Tgi
3L	12288722	3L_12288722_SNP [dm3] 3L_12295622_SNP [dm6]	T	A	3.066e^-4	0.881	INTRON CG4328
3R	14201494	3R_14201494_SNP [dm3] 3R_18375772_SNP [dm6]	T	A	3.073e^-4	0.881	EXON CR44946
3L	21821715	3L_21821715_SNP [dm3] 3L_21828615_SNP [dm6]	C	T	3.077e^-4	0.881	UPSTREAM CG32448 DOWNSTREAM CG7414 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21057659	3R_21057659_SNP [dm3] 3R_25231937_SNP [dm6]	T	C	3.081e^-4	0.881	INTRON Cad96Cb	TF binding site mE1_TFBS_inv
3L	9941933	3L_9941933_INS [dm3] 3L_9948833_INS [dm6]	A	ATATTAATGTTGTTTCATCA...	3.082e^-4	0.881	INTRON CG34356
2R	20727638	2R_20727638_SNP [dm3] 2R_24840115_SNP [dm6]	C	T	3.082e^-4	0.881	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4296190	2L_4296190_SNP [dm3] 2L_4296190_SNP [dm6]	A	G	3.084e^-4	0.881	INTRON tutl
X	15542470	X_15542470_SNP [dm3] X_15648437_SNP [dm6]	A	C	3.087e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	7177654	2L_7177654_SNP [dm3] 2L_7177654_SNP [dm6]	C	T	3.092e^-4	0.881	DOWNSTREAM CR44613 INTERGENIC
X	21990267	X_21990267_SNP [dm3] X_22588431_SNP [dm6]	C	T	3.106e^-4	0.882	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	20994092	3R_20994092_SNP [dm3] 3R_25168370_SNP [dm6]	A	T	3.114e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	14751659	2R_14751659_SNP [dm3] 2R_18864154_SNP [dm6]	T	C	3.123e^-4	0.882	NON_SYNONYMOUS_CODING CG43070 DOWNSTREAM CG43069 & 1 other INTRON CG43070
2R	11921376	2R_11921376_SNP [dm3] 2R_16033871_SNP [dm6]	G	A	3.132e^-4	0.882	INTRON SP2353
3R	25954217	3R_25954217_SNP [dm3] 3R_30128495_SNP [dm6]	A	G	3.132e^-4	0.882	SYNONYMOUS_CODING Ppi1 UTR_5_PRIME Ppi1 DOWNSTREAM CG31029	TF binding site mE1_TFBS_chinmo
3L	3477139	3L_3477139_SNP [dm3] 3L_3477139_SNP [dm6]	A	G	3.133e^-4	0.882	INTRON CG42324
X	21987430	X_21987430_SNP [dm3] X_22585594_SNP [dm6]	C	A	3.139e^-4	0.882	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14141699	3R_14141699_SNP [dm3] 3R_18315977_SNP [dm6]	G	A	3.146e^-4	0.882	DOWNSTREAM CG31235 INTERGENIC
3R	22199811	3R_22199811_SNP [dm3] 3R_26374089_SNP [dm6]	A	C	3.149e^-4	0.882	INTERGENIC
3R	13616372	3R_13616372_SNP [dm3] 3R_17790650_SNP [dm6]	G	T	3.156e^-4	0.882	INTRON CG43102
3R	14071937	3R_14071937_SNP [dm3] 3R_18246215_SNP [dm6]	A	G	3.159e^-4	0.882	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6544611	2L_6544611_SNP [dm3] 2L_6544611_SNP [dm6]	T	C	3.161e^-4	0.882	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6544612	2L_6544612_SNP [dm3] 2L_6544612_SNP [dm6]	C	G	3.161e^-4	0.882	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6545400	2L_6545400_SNP [dm3] 2L_6545400_SNP [dm6]	G	C	3.161e^-4	0.882	INTRON eya	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14104845	3L_14104845_SNP [dm3] 3L_14111745_SNP [dm6]	C	A	3.182e^-4	0.883	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9552914	3L_9552914_SNP [dm3] 3L_9559814_SNP [dm6]	G	A	3.185e^-4	0.883	INTRON CG42673
2R	18962077	2R_18962077_SNP [dm3] 2R_23074554_SNP [dm6]	T	C	3.196e^-4	0.883	UPSTREAM CG3085 & 1 other INTRON Fib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16240803	3L_16240803_SNP [dm3] 3L_16247703_SNP [dm6]	G	C	3.197e^-4	0.883	INTERGENIC
2R	4571541	2R_4571541_INS [dm3] 2R_8684036_INS [dm6]	T	TA	3.204e^-4	0.883	DOWNSTREAM tRNA:L2:44EF INTERGENIC
X	11904878	X_11904878_SNP [dm3] X_12010845_SNP [dm6]	G	A	3.206e^-4	0.883	NON_SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
3L	857185	3L_857185_DEL [dm3] 3L_857185_DEL [dm6]	TC	G	3.208e^-4	0.883	UTR_5_PRIME dpr20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9005683	3R_9005683_SNP [dm3] 3R_13179961_SNP [dm6]	T	C	3.213e^-4	0.883	INTERGENIC
2R	10000553	2R_10000553_SNP [dm3] 2R_14113048_SNP [dm6]	G	A	3.215e^-4	0.883	INTRON Prosap
3R	20992199	3R_20992199_SNP [dm3] 3R_25166477_SNP [dm6]	T	C	3.221e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12753422	2L_12753422_SNP [dm3] 2L_12753422_SNP [dm6]	T	C	3.223e^-4	0.883	INTERGENIC
3R	8997493	3R_8997493_SNP [dm3] 3R_13171771_SNP [dm6]	A	C	3.228e^-4	0.883	INTERGENIC
3R	14231451	3R_14231451_SNP [dm3] 3R_18405729_SNP [dm6]	T	C	3.238e^-4	0.883	SYNONYMOUS_CODING CG7685 DOWNSTREAM CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5738599	2L_5738599_SNP [dm3] 2L_5738599_SNP [dm6]	C	T	3.252e^-4	0.883	INTRON CG11030 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5511284	X_5511284_SNP [dm3] X_5617251_SNP [dm6]	G	T	3.253e^-4	0.883	UPSTREAM CG34434 INTRON RhoGAP5A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	10543653	3R_10543653_SNP [dm3] 3R_14717931_SNP [dm6]	G	A	3.253e^-4	0.883	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18628563	3L_18628563_SNP [dm3] 3L_18635463_SNP [dm6]	T	C	3.263e^-4	0.883	INTRON MYPT-75D
3R	11265445	3R_11265445_SNP [dm3] 3R_15439723_SNP [dm6]	T	G	3.264e^-4	0.883	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3L	10465128	3L_10465128_SNP [dm3] 3L_10472028_SNP [dm6]	T	C	3.267e^-4	0.883	INTERGENIC
2R	17036735	2R_17036735_DEL [dm3] 2R_21149230_DEL [dm6]	TAATTCAT	T	3.278e^-4	0.883	UTR_3_PRIME CG30389	TF binding site mE1_TFBS_chinmo
2L	2342361	2L_2342361_SNP [dm3] 2L_2342361_SNP [dm6]	C	G	3.283e^-4	0.883	INTRON CG9967 & 1 other
3R	14297016	3R_14297016_SNP [dm3] 3R_18471294_SNP [dm6]	C	T	3.292e^-4	0.883	INTRON fru
3R	9062196	3R_9062196_SNP [dm3] 3R_13236474_SNP [dm6]	A	G	3.299e^-4	0.883	INTRON Ace
3R	12767889	3R_12767889_SNP [dm3] 3R_16942167_SNP [dm6]	G	T	3.302e^-4	0.883	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20633538	2R_20633538_SNP [dm3] 2R_24746015_SNP [dm6]	T	A	3.304e^-4	0.883	INTRON CG30421
3R	4807483	3R_4807483_SNP [dm3] 3R_8981761_SNP [dm6]	T	G	3.308e^-4	0.883	DOWNSTREAM RagA-B INTRON CAHbeta
3R	12181982	3R_12181982_INS [dm3] 3R_16356260_INS [dm6]	T	TCAACGTTAAATGCAAA...	3.315e^-4	0.883	INTRON CG10311
3R	14118344	3R_14118344_SNP [dm3] 3R_18292622_SNP [dm6]	C	T	3.319e^-4	0.883	UTR_5_PRIME l_3_05822 UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi
3L	15885376	3L_15885376_SNP [dm3] 3L_15892276_SNP [dm6]	G	T	3.321e^-4	0.883	INTRON pHCl
3R	25957717	3R_25957717_SNP [dm3] 3R_30131995_SNP [dm6]	C	T	3.321e^-4	0.883	SYNONYMOUS_CODING CG31029 DOWNSTREAM Tpi	TF binding site BDTNP1_TFBS_twi
X	21987427	X_21987427_SNP [dm3] X_22585591_SNP [dm6]	G	C	3.325e^-4	0.883	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12248331	3R_12248331_SNP [dm3] 3R_16422609_SNP [dm6]	A	C	3.325e^-4	0.883	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	4843513	2L_4843513_SNP [dm3] 2L_4843513_SNP [dm6]	A	G	3.327e^-4	0.883	SYNONYMOUS_CODING mxt INTRON mxt	TF binding site mE1_TFBS_chinmo
2R	12587620	2R_12587620_SNP [dm3] 2R_16700115_SNP [dm6]	C	T	3.329e^-4	0.883	INTRON CG30463
3R	21066332	3R_21066332_SNP [dm3] 3R_25240610_SNP [dm6]	G	A	3.330e^-4	0.883	SPLICE_SITE_REGION to INTRON to	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5942410	3L_5942410_INS [dm3] 3L_5949310_INS [dm6]	C	TTAT	3.336e^-4	0.883	INTRON CG33993
3R	12248315	3R_12248315_SNP [dm3] 3R_16422593_SNP [dm6]	C	T	3.362e^-4	0.883	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3L	13195086	3L_13195086_SNP [dm3] 3L_13201986_SNP [dm6]	G	A	3.365e^-4	0.883	INTERGENIC
2L	7951110	2L_7951110_DEL [dm3] 2L_7951110_DEL [dm6]	TACATCTTTCCT...	T	3.367e^-4	0.883	INTRON Snoo
3L	17302017	3L_17302017_SNP [dm3] 3L_17308917_SNP [dm6]	C	T	3.368e^-4	0.883	INTERGENIC
2R	19136507	2R_19136507_SNP [dm3] 2R_23248984_SNP [dm6]	T	A	3.372e^-4	0.883	INTERGENIC
3L	16763658	3L_16763658_SNP [dm3] 3L_16770558_SNP [dm6]	T	C	3.372e^-4	0.883	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4810841	3R_4810841_SNP [dm3] 3R_8985119_SNP [dm6]	C	T	3.373e^-4	0.883	NON_SYNONYMOUS_CODING CG11970 UPSTREAM RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11219643	3L_11219643_SNP [dm3] 3L_11226543_SNP [dm6]	G	T	3.375e^-4	0.883	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
2R	10775366	2R_10775366_SNP [dm3] 2R_14887861_SNP [dm6]	A	C	3.377e^-4	0.883	UPSTREAM Cyp6a21 INTRON Cyp6a8
3L	13308983	3L_13308983_SNP [dm3] 3L_13315883_SNP [dm6]	T	A	3.388e^-4	0.884	INTERGENIC
3R	14362983	3R_14362983_SNP [dm3] 3R_18537261_SNP [dm6]	A	T	3.398e^-4	0.886	INTRON fru
2R	19927946	2R_19927946_SNP [dm3] 2R_24040423_SNP [dm6]	G	T	3.408e^-4	0.887	SPLICE_SITE_REGION IntS1 INTRON IntS1
2L	5464318	2L_5464318_SNP [dm3] 2L_5464318_SNP [dm6]	C	T	3.430e^-4	0.887	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	14298314	3R_14298314_SNP [dm3] 3R_18472592_SNP [dm6]	T	A	3.431e^-4	0.887	INTRON fru
3R	6825408	3R_6825408_SNP [dm3] 3R_10999686_SNP [dm6]	G	T	3.434e^-4	0.887	INTRON CG34114
X	10144975	X_10144975_SNP [dm3] X_10250942_SNP [dm6]	T	C	3.435e^-4	0.887	INTRON Hk
3R	16891076	3R_16891076_SNP [dm3] 3R_21065354_SNP [dm6]	C	T	3.438e^-4	0.887	START_GAINED AnxB9 UTR_5_PRIME AnxB9 UPSTREAM Cortactin & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	8533108	X_8533108_SNP [dm3] X_8639075_SNP [dm6]	G	A	3.443e^-4	0.887	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13657051	3R_13657051_SNP [dm3] 3R_17831329_SNP [dm6]	C	T	3.444e^-4	0.887	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21787173	3L_21787173_SNP [dm3] 3L_21794073_SNP [dm6]	C	A	3.450e^-4	0.887	INTERGENIC
2L	6544531	2L_6544531_SNP [dm3] 2L_6544531_SNP [dm6]	C	A	3.460e^-4	0.887	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20136633	3L_20136633_SNP [dm3] 3L_20143533_SNP [dm6]	G	A	3.464e^-4	0.887	INTERGENIC
2R	18101570	2R_18101570_SNP [dm3] 2R_22214065_SNP [dm6]	C	T	3.467e^-4	0.887	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10480232	2L_10480232_SNP [dm3] 2L_10480232_SNP [dm6]	G	A	3.472e^-4	0.887	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3595417	3L_3595417_SNP [dm3] 3L_3595417_SNP [dm6]	T	C	3.477e^-4	0.887	INTRON Eip63E
2R	19894337	2R_19894337_SNP [dm3] 2R_24006814_SNP [dm6]	A	G	3.487e^-4	0.887	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16309049	2R_16309049_SNP [dm3] 2R_20421544_SNP [dm6]	A	T	3.488e^-4	0.887	INTERGENIC
3L	14209870	3L_14209870_SNP [dm3] 3L_14216770_SNP [dm6]	C	T	3.488e^-4	0.887	INTRON nuf
3R	8896656	3R_8896656_SNP [dm3] 3R_13070934_SNP [dm6]	G	A	3.489e^-4	0.887	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3492519	2L_3492519_SNP [dm3] 2L_3492519_SNP [dm6]	G	C	3.497e^-4	0.888	INTERGENIC
2R	11796757	2R_11796757_SNP [dm3] 2R_15909252_SNP [dm6]	C	T	3.520e^-4	0.893	INTRON sli
3L	16214379	3L_16214379_INS [dm3] 3L_16221279_INS [dm6]	A	AATATA	3.549e^-4	0.899	UPSTREAM tRNA:CR32153 INTERGENIC
2R	20613972	2R_20613972_SNP [dm3] 2R_24726449_SNP [dm6]	G	A	3.552e^-4	0.899	SYNONYMOUS_CODING Mid1	TF binding site mE1_TFBS_chinmo
X	21324963	X_21324963_DEL [dm3] X_21453936_DEL [dm6]	TT	T	3.560e^-4	0.899	INTRON CG42343
2L	11309465	2L_11309465_SNP [dm3] 2L_11309465_SNP [dm6]	T	C	3.565e^-4	0.899	INTERGENIC
3L	13441614	3L_13441614_SNP [dm3] 3L_13448514_SNP [dm6]	A	G	3.572e^-4	0.899	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11248462	2R_11248462_SNP [dm3] 2R_15360957_SNP [dm6]	T	C	3.573e^-4	0.899	INTRON unc-5
2R	7584030	2R_7584030_SNP [dm3] 2R_11696525_SNP [dm6]	T	G	3.584e^-4	0.899	UTR_3_PRIME CG13197
X	8935093	X_8935093_SNP [dm3] X_9041060_SNP [dm6]	A	C	3.585e^-4	0.899	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	3.594e^-4	0.9	INTRON cdi
3L	15017152	3L_15017152_SNP [dm3] 3L_15024052_SNP [dm6]	A	T	3.597e^-4	0.9	DOWNSTREAM CG32148 INTRON Sytbeta
3L	7448301	3L_7448301_SNP [dm3] 3L_7455201_SNP [dm6]	C	T	3.601e^-4	0.9	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
2L	10338225	2L_10338225_SNP [dm3] 2L_10338225_SNP [dm6]	A	T	3.617e^-4	0.902	INTRON GATAd
3L	16228398	3L_16228398_SNP [dm3] 3L_16235298_SNP [dm6]	T	C	3.623e^-4	0.902	INTRON l_3_72Dp
3L	4634802	3L_4634802_SNP [dm3] 3L_4634802_SNP [dm6]	G	A	3.628e^-4	0.902	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12175767	3R_12175767_SNP [dm3] 3R_16350045_SNP [dm6]	G	A	3.633e^-4	0.902	UPSTREAM CG14879 DOWNSTREAM CG10311 INTRON Manf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3R	15324613	3R_15324613_SNP [dm3] 3R_19498891_SNP [dm6]	T	C	3.634e^-4	0.902	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	11282664	3R_11282664_DEL [dm3] 3R_15456942_DEL [dm6]	AATGGCGC	A	3.646e^-4	0.904	INTRON AdamTS-A
3R	15324572	3R_15324572_SNP [dm3] 3R_19498850_SNP [dm6]	A	G	3.654e^-4	0.905	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	16813426	3R_16813426_SNP [dm3] 3R_20987704_SNP [dm6]	A	G	3.672e^-4	0.907	UTR_5_PRIME CG43446 INTRON Calx
2L	878686	2L_878686_SNP [dm3] 2L_878686_SNP [dm6]	C	T	3.686e^-4	0.907	SYNONYMOUS_CODING CG15824 DOWNSTREAM ninaA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6118179	3L_6118179_SNP [dm3] 3L_6125079_SNP [dm6]	G	A	3.692e^-4	0.907	NON_SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	1056713	2L_1056713_DEL [dm3] 2L_1056713_DEL [dm6]	CGA	C	3.695e^-4	0.907	INTRON S	TF binding site BDTNP1_TFBS_da
2R	18060891	2R_18060891_SNP [dm3] 2R_22173386_SNP [dm6]	G	T	3.695e^-4	0.907	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18062693	2R_18062693_SNP [dm3] 2R_22175188_SNP [dm6]	A	G	3.695e^-4	0.907	NON_SYNONYMOUS_CODING CG6758 UPSTREAM CG3045 EXON CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21236795	3R_21236795_SNP [dm3] 3R_25411073_SNP [dm6]	G	A	3.696e^-4	0.907	INTRON Fur1
3R	14033352	3R_14033352_INS [dm3] 3R_18207630_INS [dm6]	A	AG	3.703e^-4	0.907	INTRON CG7985
3R	3462562	3R_3462562_SNP [dm3] 3R_7636840_SNP [dm6]	C	T	3.712e^-4	0.908	INTRON CG34127
3R	10634074	3R_10634074_SNP [dm3] 3R_14808352_SNP [dm6]	A	T	3.714e^-4	0.908	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	19942000	3L_19942000_SNP [dm3] 3L_19948900_SNP [dm6]	A	G	3.726e^-4	0.908	INTRON Ac76E
3R	4809767	3R_4809767_SNP [dm3] 3R_8984045_SNP [dm6]	C	T	3.732e^-4	0.908	UPSTREAM CG11970 INTRON RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10052661	2L_10052661_DEL [dm3] 2L_10052661_DEL [dm6]	ACATAAGGGGGCA...	A	3.737e^-4	0.908	UPSTREAM CR44875 DOWNSTREAM CR44874 INTERGENIC
3R	23539368	3R_23539368_SNP [dm3] 3R_27713646_SNP [dm6]	T	G	3.752e^-4	0.908	INTERGENIC
3L	12356911	3L_12356911_SNP [dm3] 3L_12363811_SNP [dm6]	G	A	3.753e^-4	0.908	INTERGENIC
3L	10551646	3L_10551646_SNP [dm3] 3L_10558546_SNP [dm6]	A	G	3.758e^-4	0.908	SYNONYMOUS_CODING CG6527 INTRON A2bp1
3R	25505723	3R_25505723_SNP [dm3] 3R_29680001_SNP [dm6]	G	A	3.762e^-4	0.908	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad
3L	17706627	3L_17706627_SNP [dm3] 3L_17713527_SNP [dm6]	G	C	3.763e^-4	0.908	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	12297316	3L_12297316_SNP [dm3] 3L_12304216_SNP [dm6]	G	T	3.766e^-4	0.908	INTERGENIC
2L	9655760	2L_9655760_SNP [dm3] 2L_9655760_SNP [dm6]	A	G	3.775e^-4	0.908	SYNONYMOUS_CODING Apoltp UPSTREAM CG33299
3R	12278643	3R_12278643_DEL [dm3] 3R_16452921_DEL [dm6]	CTTTCTCTCTCTTTATTG...	AAAATGTA	3.779e^-4	0.908	UTR_5_PRIME Pak3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16763656	3L_16763656_SNP [dm3] 3L_16770556_SNP [dm6]	C	A	3.785e^-4	0.908	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9942001	3L_9942001_MNP [dm3] 3L_9948901_MNP [dm6]	GTTC	AAGG	3.790e^-4	0.908	INTRON CG34356
3L	9942020	3L_9942020_DEL [dm3] 3L_9948920_DEL [dm6]	ACTAATAATTACC...	GA	3.790e^-4	0.908	INTRON CG34356
3L	23199343	3L_23199343_INS [dm3] 3L_23206243_INS [dm6]	A	ATA	3.793e^-4	0.908	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	19284132	2R_19284132_DEL [dm3] 2R_23396609_DEL [dm6]	TT	T	3.795e^-4	0.908	UTR_5_PRIME CG3530 DOWNSTREAM CG3520
X	21989116	X_21989116_SNP [dm3] X_22587280_SNP [dm6]	T	G	3.814e^-4	0.909	INTRON Cda4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3073150	2R_3073150_SNP [dm3] 2R_7185645_SNP [dm6]	T	A	3.814e^-4	0.909	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo
X	20254328	X_20254328_SNP [dm3] X_20383301_SNP [dm6]	A	T	3.815e^-4	0.909	DOWNSTREAM CR34311 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9000557	X_9000557_SNP [dm3] X_9106524_SNP [dm6]	G	A	3.815e^-4	0.909	UTR_5_PRIME Bx42 UPSTREAM Arfrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2626348	3L_2626348_SNP [dm3] 3L_2626348_SNP [dm6]	A	T	3.822e^-4	0.909	INTRON Pxn
3L	13049105	3L_13049105_SNP [dm3] 3L_13056005_SNP [dm6]	A	G	3.830e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	2144106	3L_2144106_DEL [dm3] 3L_2144106_DEL [dm6]	ATTTGAAAGCGA...	A	3.844e^-4	0.912	INTRON zormin
2R	18041932	2R_18041932_SNP [dm3] 2R_22154427_SNP [dm6]	G	C	3.855e^-4	0.914	INTRON a
X	14457436	X_14457436_SNP [dm3] X_14563403_SNP [dm6]	C	T	3.869e^-4	0.915	INTERGENIC
X	7980167	X_7980167_SNP [dm3] X_8086134_SNP [dm6]	A	G	3.870e^-4	0.915	DOWNSTREAM CR45535 INTRON CG2256
2R	20025285	2R_20025285_SNP [dm3] 2R_24137762_SNP [dm6]	T	C	3.877e^-4	0.915	SYNONYMOUS_CODING CG4065 UPSTREAM CR44826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run
3R	14363746	3R_14363746_SNP [dm3] 3R_18538024_SNP [dm6]	G	T	3.882e^-4	0.915	INTRON fru
2R	18854082	2R_18854082_SNP [dm3] 2R_22966559_SNP [dm6]	G	A	3.897e^-4	0.915	INTERGENIC
3R	12175794	3R_12175794_SNP [dm3] 3R_16350072_SNP [dm6]	T	A	3.897e^-4	0.915	UPSTREAM CG14879 DOWNSTREAM CG10311 INTRON Manf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
X	6443892	X_6443892_SNP [dm3] X_6549859_SNP [dm6]	T	C	3.898e^-4	0.915	INTRON CG34417	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	20095420	3L_20095420_SNP [dm3] 3L_20102320_SNP [dm6]	T	C	3.914e^-4	0.917	INTRON CG14186
2R	18952837	2R_18952837_SNP [dm3] 2R_23065314_SNP [dm6]	C	T	3.914e^-4	0.917	SYNONYMOUS_CODING PPO3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14109673	3R_14109673_SNP [dm3] 3R_18283951_SNP [dm6]	C	T	3.925e^-4	0.917	UPSTREAM CG14312 DOWNSTREAM eIF-1A INTRON CG8064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	12949162	3R_12949162_SNP [dm3] 3R_17123440_SNP [dm6]	C	T	3.946e^-4	0.917	UPSTREAM cher INTRON cher
3L	1151776	3L_1151776_SNP [dm3] 3L_1151776_SNP [dm6]	T	A	3.949e^-4	0.917	INTRON bab2
2L	11770846	2L_11770846_SNP [dm3] 2L_11770846_SNP [dm6]	G	A	3.950e^-4	0.917	INTERGENIC
2R	1246703	2R_1246703_SNP [dm3] 2R_5359198_SNP [dm6]	A	T	3.951e^-4	0.917	INTERGENIC	transposable element FlyBase
3L	14006751	3L_14006751_SNP [dm3] 3L_14013651_SNP [dm6]	G	C	3.956e^-4	0.917	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	27384261	3R_27384261_SNP [dm3] 3R_31558539_SNP [dm6]	T	G	3.957e^-4	0.917	INTRON nyo
2R	18060782	2R_18060782_SNP [dm3] 2R_22173277_SNP [dm6]	T	C	3.961e^-4	0.917	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a
3R	14234725	3R_14234725_SNP [dm3] 3R_18409003_SNP [dm6]	A	C	3.962e^-4	0.917	SYNONYMOUS_CODING CG31122	TF binding site mE1_TFBS_inv
2R	20632561	2R_20632561_SNP [dm3] 2R_24745038_SNP [dm6]	G	A	3.965e^-4	0.917	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	21987787	X_21987787_SNP [dm3] X_22585951_SNP [dm6]	C	T	3.967e^-4	0.917	INTRON Cda4
3L	15201559	3L_15201559_SNP [dm3] 3L_15208459_SNP [dm6]	A	T	3.975e^-4	0.917	SYNONYMOUS_CODING CG6888
2R	17603980	2R_17603980_SNP [dm3] 2R_21716475_SNP [dm6]	A	G	3.995e^-4	0.918	UTR_3_PRIME HmgD DOWNSTREAM Tango11 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18738718	2R_18738718_SNP [dm3] 2R_22851195_SNP [dm6]	C	A	4.005e^-4	0.918	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
2R	16412818	2R_16412818_SNP [dm3] 2R_20525313_SNP [dm6]	G	A	4.011e^-4	0.918	UPSTREAM CR44650 & 1 other INTERGENIC
3R	12270408	3R_12270408_SNP [dm3] 3R_16444686_SNP [dm6]	A	T	4.016e^-4	0.918	NON_SYNONYMOUS_CODING CG14882 DOWNSTREAM Pak3
3L	10693228	3L_10693228_SNP [dm3] 3L_10700128_SNP [dm6]	G	T	4.020e^-4	0.918	INTERGENIC
3L	12927366	3L_12927366_SNP [dm3] 3L_12934266_SNP [dm6]	T	A	4.022e^-4	0.918	INTERGENIC
3R	14027765	3R_14027765_INS [dm3] 3R_18202043_INS [dm6]	T	TG	4.022e^-4	0.918	INTRON CG7985
2L	9824534	2L_9824534_SNP [dm3] 2L_9824534_SNP [dm6]	G	C	4.034e^-4	0.918	INTRON nAChRalpha6
2R	19927376	2R_19927376_SNP [dm3] 2R_24039853_SNP [dm6]	A	G	4.044e^-4	0.918	SYNONYMOUS_CODING IntS1
2R	18937025	2R_18937025_SNP [dm3] 2R_23049502_SNP [dm6]	A	G	4.052e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18101535	2R_18101535_SNP [dm3] 2R_22214030_SNP [dm6]	T	A	4.056e^-4	0.918	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12476425	2R_12476425_SNP [dm3] 2R_16588920_SNP [dm6]	G	A	4.067e^-4	0.918	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16900338	3L_16900338_SNP [dm3] 3L_16907238_SNP [dm6]	G	C	4.076e^-4	0.918	DOWNSTREAM Lmpt INTRON Lmpt
3L	10034590	3L_10034590_SNP [dm3] 3L_10041490_SNP [dm6]	G	A	4.083e^-4	0.918	DOWNSTREAM dpr6 INTRON dpr6
X	11754452	X_11754452_SNP [dm3] X_11860419_SNP [dm6]	C	T	4.083e^-4	0.918	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
2R	18812342	2R_18812342_SNP [dm3] 2R_22924819_SNP [dm6]	C	A	4.084e^-4	0.918	UPSTREAM CG42678 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7773210	3L_7773210_SNP [dm3] 3L_7780110_SNP [dm6]	G	A	4.090e^-4	0.918	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
3R	9158276	3R_9158276_SNP [dm3] 3R_13332554_SNP [dm6]	C	A	4.094e^-4	0.918	UTR_5_PRIME PK2-R2 INTRON PK2-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13352794	2L_13352794_SNP [dm3] 2L_13352794_SNP [dm6]	G	A	4.098e^-4	0.918	SPLICE_SITE_REGION CG9395 INTRON CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23710482	3R_23710482_SNP [dm3] 3R_27884760_SNP [dm6]	C	T	4.102e^-4	0.918	INTRON CG34353
2R	18109209	2R_18109209_SNP [dm3] 2R_22221704_SNP [dm6]	G	A	4.106e^-4	0.918	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
2R	16675710	2R_16675710_SNP [dm3] 2R_20788205_SNP [dm6]	C	T	4.108e^-4	0.918	UTR_3_PRIME CG43666
3L	14511316	3L_14511316_SNP [dm3] 3L_14518216_SNP [dm6]	C	T	4.120e^-4	0.918	SYNONYMOUS_CODING CG9592 INTRON bbg
X	11074641	X_11074641_DEL [dm3] X_11180608_DEL [dm6]	TGAGTGGT	T	4.121e^-4	0.918	INTERGENIC
2L	7377996	2L_7377996_SNP [dm3] 2L_7377996_SNP [dm6]	A	T	4.126e^-4	0.918	DOWNSTREAM Wnt10 INTRON ninaC
2L	13478608	2L_13478608_SNP [dm3] 2L_13478608_SNP [dm6]	A	T	4.129e^-4	0.918	INTRON CG42784
3R	12948778	3R_12948778_SNP [dm3] 3R_17123056_SNP [dm6]	T	A	4.130e^-4	0.918	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3L	21203539	3L_21203539_SNP [dm3] 3L_21210439_SNP [dm6]	T	C	4.136e^-4	0.918	START_GAINED CG10508 UTR_5_PRIME CG10508 UPSTREAM CG10510
3R	10550093	3R_10550093_SNP [dm3] 3R_14724371_SNP [dm6]	T	C	4.137e^-4	0.918	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	20625321	3R_20625321_SNP [dm3] 3R_24799599_SNP [dm6]	C	A	4.138e^-4	0.918	UTR_5_PRIME Ude UPSTREAM Ude DOWNSTREAM polybromo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20190849	2R_20190849_SNP [dm3] 2R_24303326_SNP [dm6]	C	T	4.138e^-4	0.918	INTERGENIC
3R	14585972	3R_14585972_SNP [dm3] 3R_18760250_SNP [dm6]	G	C	4.138e^-4	0.918	INTRON CG7720
3L	8038839	3L_8038839_SNP [dm3] 3L_8045739_SNP [dm6]	C	T	4.140e^-4	0.918	INTRON nmo
2L	6025858	2L_6025858_SNP [dm3] 2L_6025858_SNP [dm6]	A	G	4.142e^-4	0.918	DOWNSTREAM CG9109 INTERGENIC
X	7379163	X_7379163_SNP [dm3] X_7485130_SNP [dm6]	A	G	4.152e^-4	0.918	INTERGENIC
3L	1974116	3L_1974116_SNP [dm3] 3L_1974116_SNP [dm6]	C	T	4.164e^-4	0.918	SYNONYMOUS_CODING CG1139
2R	16309182	2R_16309182_SNP [dm3] 2R_20421677_SNP [dm6]	A	G	4.164e^-4	0.918	INTERGENIC
2R	20692042	2R_20692042_SNP [dm3] 2R_24804519_SNP [dm6]	G	A	4.167e^-4	0.918	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	14141898	3R_14141898_SNP [dm3] 3R_18316176_SNP [dm6]	G	T	4.167e^-4	0.918	UTR_3_PRIME CG31235 DOWNSTREAM CG31235
2R	18100499	2R_18100499_SNP [dm3] 2R_22212994_SNP [dm6]	G	A	4.184e^-4	0.92	UTR_5_PRIME ari-2 DOWNSTREAM CG11291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5097529	2L_5097529_SNP [dm3] 2L_5097529_SNP [dm6]	C	T	4.185e^-4	0.92	SPLICE_SITE_REGION CG4230 INTRON CG4230	TF binding site BDTNP1_TFBS_dl
2L	10933690	2L_10933690_SNP [dm3] 2L_10933690_SNP [dm6]	T	A	4.204e^-4	0.922	INTRON dpr2
X	20126805	X_20126805_SNP [dm3] X_20255779_SNP [dm6]	G	T	4.206e^-4	0.922	SYNONYMOUS_CODING CG17065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16309959	2R_16309959_SNP [dm3] 2R_20422454_SNP [dm6]	G	C	4.210e^-4	0.922	INTERGENIC
3R	14204889	3R_14204889_SNP [dm3] 3R_18379167_SNP [dm6]	G	A	4.235e^-4	0.925	INTRON CG7675
X	8274114	X_8274114_SNP [dm3] X_8380081_SNP [dm6]	C	A	4.239e^-4	0.925	INTERGENIC
2L	508740	2L_508740_SNP [dm3] 2L_508740_SNP [dm6]	A	C	4.241e^-4	0.925	INTRON ush
2R	5091363	2R_5091363_SNP [dm3] 2R_9203858_SNP [dm6]	C	A	4.255e^-4	0.925	DOWNSTREAM CG8027 INTERGENIC
3L	5940277	3L_5940277_INS [dm3] 3L_5947177_INS [dm6]	T	TGGGCT	4.266e^-4	0.925	INTRON CG33993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20392991	3L_20392991_SNP [dm3] 3L_20399891_SNP [dm6]	C	T	4.267e^-4	0.925	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11921450	2R_11921450_SNP [dm3] 2R_16033945_SNP [dm6]	G	A	4.274e^-4	0.925	INTRON SP2353
3R	25505718	3R_25505718_SNP [dm3] 3R_29679996_SNP [dm6]	G	A	4.274e^-4	0.925	NON_SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad
X	21987554	X_21987554_SNP [dm3] X_22585718_SNP [dm6]	G	T	4.296e^-4	0.925	INTRON Cda4	TF binding site mE1_TFBS_HSA
3L	16877320	3L_16877320_SNP [dm3] 3L_16884220_SNP [dm6]	T	A	4.310e^-4	0.925	INTRON Lmpt
3L	19014283	3L_19014283_SNP [dm3] 3L_19021183_SNP [dm6]	C	G	4.312e^-4	0.925	INTRON nkd
3L	12307114	3L_12307114_SNP [dm3] 3L_12314014_SNP [dm6]	T	G	4.333e^-4	0.925	INTERGENIC	regulatory region REDfly_CRMs
2R	20714644	2R_20714644_SNP [dm3] 2R_24827121_SNP [dm6]	A	T	4.341e^-4	0.925	INTRON Dll
2R	18475309	2R_18475309_SNP [dm3] 2R_22587804_SNP [dm6]	C	T	4.344e^-4	0.925	INTRON dnr1
2R	12588986	2R_12588986_SNP [dm3] 2R_16701481_SNP [dm6]	T	A	4.347e^-4	0.925	INTRON CG30463
3R	14184246	3R_14184246_SNP [dm3] 3R_18358524_SNP [dm6]	T	C	4.355e^-4	0.925	INTRON CG15803
3R	14234398	3R_14234398_SNP [dm3] 3R_18408676_SNP [dm6]	C	A	4.355e^-4	0.925	SYNONYMOUS_CODING CG31122	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16136844	2R_16136844_SNP [dm3] 2R_20249339_SNP [dm6]	C	T	4.356e^-4	0.925	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad
3L	13839248	3L_13839248_SNP [dm3] 3L_13846148_SNP [dm6]	T	A	4.359e^-4	0.925	UTR_5_PRIME Hml DOWNSTREAM Tsp68C
3R	4754676	3R_4754676_SNP [dm3] 3R_8928954_SNP [dm6]	T	G	4.359e^-4	0.925	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	5291648	3L_5291648_SNP [dm3] 3L_5298548_SNP [dm6]	A	T	4.366e^-4	0.925	INTERGENIC
3L	14629672	3L_14629672_DEL [dm3] 3L_14636572_DEL [dm6]	TCAT	T	4.366e^-4	0.925	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2L	943880	2L_943880_SNP [dm3] 2L_943880_SNP [dm6]	C	T	4.376e^-4	0.925	INTRON CG4341
2R	11319203	2R_11319203_SNP [dm3] 2R_15431698_SNP [dm6]	T	C	4.406e^-4	0.925	INTRON CG43729
3L	4397290	3L_4397290_MNP [dm3] 3L_4397290_MNP [dm6]	CAA	AGT	4.423e^-4	0.925	INTRON slow
3R	23586548	3R_23586548_SNP [dm3] 3R_27760826_SNP [dm6]	G	A	4.424e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23525629	3R_23525629_SNP [dm3] 3R_27699907_SNP [dm6]	T	C	4.429e^-4	0.925	NON_SYNONYMOUS_CODING ALiX UPSTREAM btz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6629637	3L_6629637_SNP [dm3] 3L_6636537_SNP [dm6]	G	A	4.430e^-4	0.925	INTERGENIC
3L	14219627	3L_14219627_SNP [dm3] 3L_14226527_SNP [dm6]	C	T	4.434e^-4	0.925	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	21618192	3R_21618192_SNP [dm3] 3R_25792470_SNP [dm6]	T	C	4.440e^-4	0.925	UPSTREAM CR43631 DOWNSTREAM CR43632 INTERGENIC
3R	24410006	3R_24410006_SNP [dm3] 3R_28584284_SNP [dm6]	G	A	4.440e^-4	0.925	SYNONYMOUS_CODING fkh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	11219481	3L_11219481_SNP [dm3] 3L_11226381_SNP [dm6]	G	A	4.441e^-4	0.925	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8995323	3R_8995323_SNP [dm3] 3R_13169601_SNP [dm6]	T	A	4.443e^-4	0.925	INTERGENIC
3R	6992092	3R_6992092_SNP [dm3] 3R_11166370_SNP [dm6]	T	C	4.443e^-4	0.925	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
3R	8979136	3R_8979136_SNP [dm3] 3R_13153414_SNP [dm6]	A	T	4.450e^-4	0.925	INTRON timeout & 2 others	TF binding site mE1_TFBS_inv
3R	8984033	3R_8984033_SNP [dm3] 3R_13158311_SNP [dm6]	A	T	4.450e^-4	0.925	INTRON timeout
3L	17382245	3L_17382245_SNP [dm3] 3L_17389145_SNP [dm6]	A	C	4.457e^-4	0.925	UPSTREAM CG13731 INTERGENIC
2R	17333196	2R_17333196_SNP [dm3] 2R_21445691_SNP [dm6]	G	A	4.458e^-4	0.925	INTRON Sdc
2R	7818042	2R_7818042_SNP [dm3] 2R_11930537_SNP [dm6]	T	A	4.460e^-4	0.925	UPSTREAM CR44312 INTERGENIC
3R	14953714	3R_14953714_SNP [dm3] 3R_19127992_SNP [dm6]	T	C	4.466e^-4	0.925	INTRON CG6040
3L	1928241	3L_1928241_SNP [dm3] 3L_1928241_SNP [dm6]	G	T	4.480e^-4	0.925	INTRON Dbx	TF binding site mE1_TFBS_chinmo
3R	11423521	3R_11423521_SNP [dm3] 3R_15597799_SNP [dm6]	A	C	4.481e^-4	0.925	INTERGENIC
2L	4156549	2L_4156549_SNP [dm3] 2L_4156549_SNP [dm6]	A	G	4.482e^-4	0.925	INTERGENIC
2L	3277498	2L_3277498_SNP [dm3] 2L_3277498_SNP [dm6]	T	C	4.482e^-4	0.925	INTRON CG3332	TF binding site mE1_TFBS_cad
2L	5235827	2L_5235827_SNP [dm3] 2L_5235827_SNP [dm6]	C	A	4.484e^-4	0.925	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10693203	3L_10693203_SNP [dm3] 3L_10700103_SNP [dm6]	G	A	4.486e^-4	0.925	INTERGENIC
3R	14186719	3R_14186719_SNP [dm3] 3R_18360997_SNP [dm6]	T	G	4.487e^-4	0.925	UPSTREAM CG15803 & 1 other EXON CR45634	TF binding site mE1_TFBS_chinmo
X	18730490	X_18730490_SNP [dm3] X_18836457_SNP [dm6]	C	T	4.488e^-4	0.925	INTRON Pvf1
3R	13570113	3R_13570113_SNP [dm3] 3R_17744391_SNP [dm6]	C	T	4.489e^-4	0.925	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	15807147	2L_15807147_SNP [dm3] 2L_15807147_SNP [dm6]	C	A	4.495e^-4	0.925	DOWNSTREAM CR44602 INTERGENIC
3L	9941964	3L_9941964_SNP [dm3] 3L_9948864_SNP [dm6]	G	A	4.500e^-4	0.925	INTRON CG34356
3L	9941968	3L_9941968_INS [dm3] 3L_9948868_INS [dm6]	G	ATTTA	4.500e^-4	0.925	INTRON CG34356
3L	9941986	3L_9941986_SNP [dm3] 3L_9948886_SNP [dm6]	G	A	4.500e^-4	0.925	INTRON CG34356
3L	18452673	3L_18452673_SNP [dm3] 3L_18459573_SNP [dm6]	T	A	4.505e^-4	0.925	NON_SYNONYMOUS_CODING CG32196	TF binding site mE1_TFBS_bab1
3L	16766086	3L_16766086_SNP [dm3] 3L_16772986_SNP [dm6]	C	A	4.525e^-4	0.925	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_HSA
2L	7177651	2L_7177651_SNP [dm3] 2L_7177651_SNP [dm6]	C	T	4.537e^-4	0.925	DOWNSTREAM CR44613 INTERGENIC
3L	16770301	3L_16770301_SNP [dm3] 3L_16777201_SNP [dm6]	G	A	4.543e^-4	0.925	UTR_3_PRIME Nrt & 1 other DOWNSTREAM CG13025 & 1 other
3R	10754602	3R_10754602_SNP [dm3] 3R_14928880_SNP [dm6]	G	A	4.546e^-4	0.925	INTERGENIC
2L	7917336	2L_7917336_SNP [dm3] 2L_7917336_SNP [dm6]	A	G	4.549e^-4	0.925	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11754679	X_11754679_SNP [dm3] X_11860646_SNP [dm6]	A	T	4.552e^-4	0.925	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
3L	18911064	3L_18911064_SNP [dm3] 3L_18917964_SNP [dm6]	G	A	4.554e^-4	0.925	INTRON CG6839
2R	17155449	2R_17155449_SNP [dm3] 2R_21267944_SNP [dm6]	C	T	4.561e^-4	0.925	UPSTREAM CG30393 INTRON Rgk3
3R	10634068	3R_10634068_SNP [dm3] 3R_14808346_SNP [dm6]	T	C	4.583e^-4	0.925	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23587607	3R_23587607_SNP [dm3] 3R_27761885_SNP [dm6]	C	T	4.601e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13442091	3L_13442091_SNP [dm3] 3L_13448991_SNP [dm6]	A	C	4.603e^-4	0.925	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3L	13442104	3L_13442104_SNP [dm3] 3L_13449004_SNP [dm6]	G	A	4.603e^-4	0.925	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3R	14182156	3R_14182156_DEL [dm3] 3R_18356434_DEL [dm6]	TGTGAGACATC...	T	4.610e^-4	0.925	INTRON CG15803
2L	11392167	2L_11392167_SNP [dm3] 2L_11392167_SNP [dm6]	C	T	4.610e^-4	0.925	INTRON CR43681	regulatory region REDfly_CRMs
3L	7000759	3L_7000759_SNP [dm3] 3L_7007659_SNP [dm6]	C	T	4.614e^-4	0.925	INTRON Mp
3R	9062463	3R_9062463_SNP [dm3] 3R_13236741_SNP [dm6]	T	A	4.621e^-4	0.925	INTRON Ace
2L	14214942	2L_14214942_SNP [dm3] 2L_14214942_SNP [dm6]	C	G	4.621e^-4	0.925	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20335161	3L_20335161_SNP [dm3] 3L_20342061_SNP [dm6]	C	A	4.628e^-4	0.925	UPSTREAM Spn77Bc INTERGENIC	transposable element FlyBase
2L	13279802	2L_13279802_SNP [dm3] 2L_13279802_SNP [dm6]	T	C	4.633e^-4	0.925	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA
2R	18617381	2R_18617381_SNP [dm3] 2R_22729876_SNP [dm6]	G	A	4.648e^-4	0.925	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25973299	3R_25973299_SNP [dm3] 3R_30147577_SNP [dm6]	G	T	4.649e^-4	0.925	INTRON AdoR
2R	17008160	2R_17008160_SNP [dm3] 2R_21120655_SNP [dm6]	C	T	4.656e^-4	0.925	UTR_3_PRIME CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
X	21293359	X_21293359_SNP [dm3] X_21422332_SNP [dm6]	C	T	4.660e^-4	0.925	UTR_3_PRIME CG42343	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2545109	3L_2545109_SNP [dm3] 3L_2545109_SNP [dm6]	T	A	4.664e^-4	0.925	INTRON Spn
2R	14189315	2R_14189315_SNP [dm3] 2R_18301810_SNP [dm6]	A	C	4.665e^-4	0.925	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16647594	2R_16647594_SNP [dm3] 2R_20760089_SNP [dm6]	G	T	4.669e^-4	0.925	INTERGENIC
3R	20934023	3R_20934023_SNP [dm3] 3R_25108301_SNP [dm6]	C	T	4.671e^-4	0.925	DOWNSTREAM CG13650 INTRON CG34027
3R	8162641	3R_8162641_DEL [dm3] 3R_12336919_DEL [dm6]	TCT	T	4.673e^-4	0.925	INTRON CR44941
2R	18392540	2R_18392540_SNP [dm3] 2R_22505035_SNP [dm6]	C	A	4.684e^-4	0.925	INTRON px	TF binding site BDTNP1_TFBS_twi
3L	18277772	3L_18277772_SNP [dm3] 3L_18284672_SNP [dm6]	C	T	4.698e^-4	0.925	INTERGENIC
X	21989212	X_21989212_INS [dm3] X_22587376_INS [dm6]	T	TT	4.708e^-4	0.925	INTRON Cda4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6118091	3L_6118091_DEL [dm3] 3L_6124991_DEL [dm6]	GT	C	4.732e^-4	0.925	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	17298976	2R_17298976_SNP [dm3] 2R_21411471_SNP [dm6]	G	C	4.738e^-4	0.925	INTRON Sdc
3R	23610822	3R_23610822_SNP [dm3] 3R_27785100_SNP [dm6]	A	C	4.746e^-4	0.925	INTRON CG34353
2R	10591681	2R_10591681_SNP [dm3] 2R_14704176_SNP [dm6]	T	C	4.747e^-4	0.925	INTRON mspo
2R	7858474	2R_7858474_SNP [dm3] 2R_11970969_SNP [dm6]	C	A	4.763e^-4	0.925	UTR_5_PRIME CG8290 UPSTREAM PI31	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20197689	2R_20197689_SNP [dm3] 2R_24310166_SNP [dm6]	T	C	4.767e^-4	0.925	INTRON betaTub60D
X	8536331	X_8536331_SNP [dm3] X_8642298_SNP [dm6]	C	A	4.773e^-4	0.925	INTRON oc	TF binding site BDTNP1_TFBS_dl
3R	23531164	3R_23531164_SNP [dm3] 3R_27705442_SNP [dm6]	C	A	4.778e^-4	0.925	INTRON CG12428	TF binding site mE1_TFBS_chinmo
2L	2848735	2L_2848735_INS [dm3] 2L_2848735_INS [dm6]	A	AG	4.780e^-4	0.925	UTR_3_PRIME CG2983 DOWNSTREAM CG3104
3L	13292775	3L_13292775_SNP [dm3] 3L_13299675_SNP [dm6]	C	G	4.788e^-4	0.925	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
2R	20206780	2R_20206780_SNP [dm3] 2R_24319257_SNP [dm6]	G	C	4.794e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12220986	X_12220986_SNP [dm3] X_12326953_SNP [dm6]	T	C	4.798e^-4	0.925	INTRON Ten-a
X	5235806	X_5235806_SNP [dm3] X_5341773_SNP [dm6]	A	C	4.809e^-4	0.925	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12288610	3L_12288610_SNP [dm3] 3L_12295510_SNP [dm6]	G	A	4.820e^-4	0.925	INTRON CG4328
2L	7582618	2L_7582618_SNP [dm3] 2L_7582618_SNP [dm6]	C	A	4.821e^-4	0.925	SYNONYMOUS_CODING Spn28B	TF binding site mE1_TFBS_HSA
3R	23546209	3R_23546209_SNP [dm3] 3R_27720487_SNP [dm6]	T	C	4.822e^-4	0.925	INTERGENIC
2R	12982554	2R_12982554_SNP [dm3] 2R_17095049_SNP [dm6]	C	T	4.825e^-4	0.925	UTR_5_PRIME GstS1	TF binding site mE1_TFBS_cad
3R	14222414	3R_14222414_SNP [dm3] 3R_18396692_SNP [dm6]	A	T	4.828e^-4	0.925	UPSTREAM CG44009 INTRON Vha100-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16927069	2L_16927069_SNP [dm3] 2L_16927069_SNP [dm6]	C	T	4.847e^-4	0.925	INTERGENIC
3R	14204895	3R_14204895_SNP [dm3] 3R_18379173_SNP [dm6]	T	C	4.849e^-4	0.925	INTRON CG7675
2R	14897983	2R_14897983_SNP [dm3] 2R_19010478_SNP [dm6]	T	A	4.852e^-4	0.925	INTERGENIC
3R	20230792	3R_20230792_SNP [dm3] 3R_24405070_SNP [dm6]	C	T	4.858e^-4	0.925	SYNONYMOUS_CODING nAChRalpha1
3L	16877560	3L_16877560_DEL [dm3] 3L_16884460_DEL [dm6]	GC	G	4.859e^-4	0.925	INTRON Lmpt
3R	21006070	3R_21006070_SNP [dm3] 3R_25180348_SNP [dm6]	A	G	4.862e^-4	0.925	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14084975	3R_14084975_SNP [dm3] 3R_18259253_SNP [dm6]	G	A	4.865e^-4	0.925	INTERGENIC	transposable element FlyBase
3R	14205739	3R_14205739_SNP [dm3] 3R_18380017_SNP [dm6]	T	C	4.867e^-4	0.925	INTRON CG7675
3R	14141930	3R_14141930_SNP [dm3] 3R_18316208_SNP [dm6]	T	G	4.890e^-4	0.925	UTR_3_PRIME CG31235 DOWNSTREAM CG31235
X	5198881	X_5198881_SNP [dm3] X_5304848_SNP [dm6]	T	G	4.892e^-4	0.925	SYNONYMOUS_CODING CG3323 INTRON CG42749
3L	20659110	3L_20659110_SNP [dm3] 3L_20666010_SNP [dm6]	G	T	4.893e^-4	0.925	INTERGENIC
2L	1056724	2L_1056724_SNP [dm3] 2L_1056724_SNP [dm6]	G	A	4.893e^-4	0.925	INTRON S	TF binding site BDTNP1_TFBS_da
3R	25982568	3R_25982568_SNP [dm3] 3R_30156846_SNP [dm6]	A	G	4.896e^-4	0.925	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3739351	2L_3739351_SNP [dm3] 2L_3739351_SNP [dm6]	G	C	4.900e^-4	0.925	INTRON CG10019
3R	14175458	3R_14175458_SNP [dm3] 3R_18349736_SNP [dm6]	T	G	4.901e^-4	0.925	INTRON CG15803
X	19396290	X_19396290_SNP [dm3] X_19502257_SNP [dm6]	G	T	4.914e^-4	0.925	INTRON Pfrx & 1 other
3R	25962485	3R_25962485_SNP [dm3] 3R_30136763_SNP [dm6]	G	A	4.919e^-4	0.925	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10480219	2L_10480219_SNP [dm3] 2L_10480219_SNP [dm6]	A	T	4.920e^-4	0.925	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10480286	2L_10480286_SNP [dm3] 2L_10480286_SNP [dm6]	G	T	4.920e^-4	0.925	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4700788	3L_4700788_SNP [dm3] 3L_4700788_SNP [dm6]	C	T	4.922e^-4	0.925	INTRON RhoGEF64C
3R	14305869	3R_14305869_SNP [dm3] 3R_18480147_SNP [dm6]	T	G	4.923e^-4	0.925	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	23658128	3R_23658128_SNP [dm3] 3R_27832406_SNP [dm6]	A	G	4.926e^-4	0.925	INTRON CG34353
2R	18060558	2R_18060558_SNP [dm3] 2R_22173053_SNP [dm6]	G	T	4.928e^-4	0.925	SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	18060751	2R_18060751_SNP [dm3] 2R_22173246_SNP [dm6]	C	G	4.928e^-4	0.925	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a
3L	13487106	3L_13487106_SNP [dm3] 3L_13494006_SNP [dm6]	G	A	4.948e^-4	0.925	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16727956	2L_16727956_INS [dm3] 2L_16727956_INS [dm6]	T	TT	4.953e^-4	0.925	UPSTREAM VhaSFD DOWNSTREAM CR43671 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17208128	2R_17208128_SNP [dm3] 2R_21320623_SNP [dm6]	G	T	4.955e^-4	0.925	SYNONYMOUS_CODING CG30394 UPSTREAM CG33655
3R	6899086	3R_6899086_SNP [dm3] 3R_11073364_SNP [dm6]	C	A	4.979e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13292739	3L_13292739_SNP [dm3] 3L_13299639_SNP [dm6]	T	A	4.981e^-4	0.925	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
2R	9477774	2R_9477774_SNP [dm3] 2R_13590269_SNP [dm6]	A	G	4.985e^-4	0.925	INTRON CG6191 & 1 other
3L	6567941	3L_6567941_SNP [dm3] 3L_6574841_SNP [dm6]	C	T	4.986e^-4	0.925	INTRON CG18769 & 1 other
2R	18050961	2R_18050961_SNP [dm3] 2R_22163456_SNP [dm6]	T	C	4.994e^-4	0.925	SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
3L	18277795	3L_18277795_SNP [dm3] 3L_18284695_SNP [dm6]	C	G	5.002e^-4	0.925	INTERGENIC
3L	12789959	3L_12789959_SNP [dm3] 3L_12796859_SNP [dm6]	C	T	5.006e^-4	0.925	DOWNSTREAM CG42709 INTRON Atg1
3L	5942407	3L_5942407_SNP [dm3] 3L_5949307_SNP [dm6]	A	T	5.010e^-4	0.925	INTRON CG33993
3R	14308509	3R_14308509_SNP [dm3] 3R_18482787_SNP [dm6]	T	A	5.014e^-4	0.925	INTRON fru
2R	18957250	2R_18957250_SNP [dm3] 2R_23069727_SNP [dm6]	G	T	5.015e^-4	0.925	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17261390	2R_17261390_SNP [dm3] 2R_21373885_SNP [dm6]	C	T	5.028e^-4	0.925	INTRON cv-2
X	21993656	X_21993656_SNP [dm3] X_22591820_SNP [dm6]	C	T	5.054e^-4	0.925	INTRON Cda4
3R	5283578	3R_5283578_SNP [dm3] 3R_9457856_SNP [dm6]	T	A	5.059e^-4	0.925	UTR_3_PRIME GstZ2
X	12160481	X_12160481_SNP [dm3] X_12266448_SNP [dm6]	A	G	5.059e^-4	0.925	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

By genomic position
Variant impact
Gene name

PC4_Nutri_Score_High phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results