DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.775e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1641 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17362257	2R_17362257_SNP [dm3] 2R_21474752_SNP [dm6]	A	C	2.069e^-6	0.995	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	19506217	X_19506217_SNP [dm3] X_19612184_SNP [dm6]	G	C	4.242e^-6	0.995	SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5611942	2L_5611942_SNP [dm3] 2L_5611942_SNP [dm6]	C	T	5.582e^-6	0.995	INTRON CG14010
2R	12364306	2R_12364306_INS [dm3] 2R_16476801_INS [dm6]	A	AA	7.086e^-6	0.995	INTERGENIC
3L	2520444	3L_2520444_SNP [dm3] 3L_2520444_SNP [dm6]	G	A	7.887e^-6	0.995	INTRON Spn
X	20411217	X_20411217_SNP [dm3] X_20540190_SNP [dm6]	A	G	8.036e^-6	0.995	INTRON RunxB	TF binding site mE1_TFBS_inv
3L	19905217	3L_19905217_SNP [dm3] 3L_19912117_SNP [dm6]	A	T	8.255e^-6	0.995	NON_SYNONYMOUS_CODING Prp3 DOWNSTREAM Mtr3	TF binding site mE1_TFBS_sens
2L	4232747	2L_4232747_SNP [dm3] 2L_4232747_SNP [dm6]	G	T	8.654e^-6	0.995	INTERGENIC
2L	4232446	2L_4232446_SNP [dm3] 2L_4232446_SNP [dm6]	G	T	9.106e^-6	0.995	INTERGENIC
3R	20591010	3R_20591010_SNP [dm3] 3R_24765288_SNP [dm6]	A	G	1.189e^-5	0.995	UPSTREAM AstA INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	8710724	2L_8710724_SNP [dm3] 2L_8710724_SNP [dm6]	C	A	1.329e^-5	0.995	SPLICE_SITE_REGION raw INTRON raw	TF binding site mE1_TFBS_chinmo
2L	4232625	2L_4232625_SNP [dm3] 2L_4232625_SNP [dm6]	C	T	1.344e^-5	0.995	INTERGENIC
2R	10933700	2R_10933700_SNP [dm3] 2R_15046195_SNP [dm6]	G	A	1.391e^-5	0.995	INTERGENIC
X	5316852	X_5316852_SNP [dm3] X_5422819_SNP [dm6]	A	G	1.499e^-5	0.995	SYNONYMOUS_CODING CG4165	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9274487	2R_9274487_SNP [dm3] 2R_13386982_SNP [dm6]	G	A	1.501e^-5	0.995	INTERGENIC
2L	16527082	2L_16527082_SNP [dm3] 2L_16527082_SNP [dm6]	C	T	1.596e^-5	0.995	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	20411243	X_20411243_SNP [dm3] X_20540216_SNP [dm6]	C	T	1.726e^-5	0.995	INTRON RunxB	TF binding site mE1_TFBS_inv
3L	2123124	3L_2123124_SNP [dm3] 3L_2123124_SNP [dm6]	A	T	1.755e^-5	0.995	INTRON zormin
2R	1996356	2R_1996356_SNP [dm3] 2R_6108851_SNP [dm6]	A	C	1.804e^-5	0.995	INTRON EcR
2R	9410382	2R_9410382_SNP [dm3] 2R_13522877_SNP [dm6]	C	T	1.834e^-5	0.995	NON_SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18051776	3L_18051776_SNP [dm3] 3L_18058676_SNP [dm6]	C	T	2.054e^-5	0.995	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9761533	2R_9761533_SNP [dm3] 2R_13874028_SNP [dm6]	C	T	2.156e^-5	0.995	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	4232509	2L_4232509_SNP [dm3] 2L_4232509_SNP [dm6]	T	A	2.296e^-5	0.995	INTERGENIC
X	15285687	X_15285687_SNP [dm3] X_15391654_SNP [dm6]	G	T	2.301e^-5	0.995	INTRON Cngl
2R	16420966	2R_16420966_SNP [dm3] 2R_20533461_SNP [dm6]	T	C	2.394e^-5	0.995	UPSTREAM CG18067 DOWNSTREAM CR44651 INTRON CG30154	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9761500	2R_9761500_SNP [dm3] 2R_13873995_SNP [dm6]	T	C	2.399e^-5	0.995	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	13109751	3R_13109751_SNP [dm3] 3R_17284029_SNP [dm6]	C	T	2.426e^-5	0.995	SYNONYMOUS_CODING CG31418 UPSTREAM CG31419	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5680379	X_5680379_SNP [dm3] X_5786346_SNP [dm6]	C	A	2.440e^-5	0.995	INTRON CG42699
X	4565701	X_4565701_SNP [dm3] X_4671668_SNP [dm6]	C	T	2.567e^-5	0.995	INTRON rap
3R	13606760	3R_13606760_SNP [dm3] 3R_17781038_SNP [dm6]	A	G	2.642e^-5	0.995	UPSTREAM CG43102 INTRON CG43102
3L	18002813	3L_18002813_SNP [dm3] 3L_18009713_SNP [dm6]	T	C	2.643e^-5	0.995	INTRON Eip75B
3R	25021116	3R_25021116_SNP [dm3] 3R_29195394_SNP [dm6]	T	G	2.665e^-5	0.995	UPSTREAM CG14509 INTERGENIC
3R	17140163	3R_17140163_SNP [dm3] 3R_21314441_SNP [dm6]	A	T	2.775e^-5	0.995	EXON Hsromega
3L	6698033	3L_6698033_SNP [dm3] 3L_6704933_SNP [dm6]	C	A	2.874e^-5	0.995	UTR_5_PRIME CG8519
3L	18052499	3L_18052499_SNP [dm3] 3L_18059399_SNP [dm6]	G	C	2.915e^-5	0.995	NON_SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	20883357	3L_20883357_SNP [dm3] 3L_20890257_SNP [dm6]	A	G	2.950e^-5	0.995	INTERGENIC
2R	9761569	2R_9761569_SNP [dm3] 2R_13874064_SNP [dm6]	C	G	3.018e^-5	0.995	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	20914733	3R_20914733_SNP [dm3] 3R_25089011_SNP [dm6]	G	T	3.216e^-5	0.995	INTERGENIC
3R	12047260	3R_12047260_DEL [dm3] 3R_16221538_DEL [dm6]	TGTGTGTGT	T	3.227e^-5	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25021113	3R_25021113_SNP [dm3] 3R_29195391_SNP [dm6]	T	A	3.588e^-5	0.995	UPSTREAM CG14509 INTERGENIC
3R	25021101	3R_25021101_DEL [dm3] 3R_29195379_DEL [dm6]	ATTATATATAT...	A	3.618e^-5	0.995	UPSTREAM CG14509 INTERGENIC
3L	10769640	3L_10769640_SNP [dm3] 3L_10776540_SNP [dm6]	C	A	3.626e^-5	0.995	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3385002	3L_3385002_SNP [dm3] 3L_3385002_SNP [dm6]	T	G	3.718e^-5	0.995	INTERGENIC
3R	13606790	3R_13606790_SNP [dm3] 3R_17781068_SNP [dm6]	A	G	3.821e^-5	0.995	UPSTREAM CG43102 INTRON CG43102
3L	20854655	3L_20854655_SNP [dm3] 3L_20861555_SNP [dm6]	T	G	3.871e^-5	0.995	INTRON CG32432
3L	1606816	3L_1606816_SNP [dm3] 3L_1606816_SNP [dm6]	T	C	3.981e^-5	0.995	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13891963	3R_13891963_SNP [dm3] 3R_18066241_SNP [dm6]	G	A	4.182e^-5	0.995	INTERGENIC
3L	6374266	3L_6374266_SNP [dm3] 3L_6381166_SNP [dm6]	G	T	4.210e^-5	0.995	INTERGENIC
X	20390304	X_20390304_SNP [dm3] X_20519277_SNP [dm6]	C	G	4.212e^-5	0.995	INTRON Tak1
X	20390310	X_20390310_SNP [dm3] X_20519283_SNP [dm6]	G	A	4.212e^-5	0.995	INTRON Tak1
3R	14457158	3R_14457158_SNP [dm3] 3R_18631436_SNP [dm6]	G	T	4.238e^-5	0.995	INTRON qin & 1 other
3L	8626033	3L_8626033_SNP [dm3] 3L_8632933_SNP [dm6]	T	C	4.241e^-5	0.995	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_sens
2R	16325255	2R_16325255_DEL [dm3] 2R_20437750_DEL [dm6]	GGAATACG	G	4.374e^-5	0.995	INTRON CG12484
X	5639855	X_5639855_SNP [dm3] X_5745822_SNP [dm6]	A	G	4.538e^-5	0.995	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	5093904	X_5093904_SNP [dm3] X_5199871_SNP [dm6]	T	A	4.612e^-5	0.995	INTRON rg & 1 other
3R	22106228	3R_22106228_SNP [dm3] 3R_26280506_SNP [dm6]	G	T	4.637e^-5	0.995	INTERGENIC
2R	7566798	2R_7566798_SNP [dm3] 2R_11679293_SNP [dm6]	T	A	4.678e^-5	0.995	UTR_5_PRIME Roc2 UPSTREAM Buffy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17024451	2R_17024451_SNP [dm3] 2R_21136946_SNP [dm6]	G	A	4.723e^-5	0.995	INTRON Magi	TF binding site mE1_TFBS_sens
2L	9186351	2L_9186351_SNP [dm3] 2L_9186351_SNP [dm6]	A	T	4.823e^-5	0.995	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19383160	2R_19383160_SNP [dm3] 2R_23495637_SNP [dm6]	G	A	4.839e^-5	0.995	INTERGENIC
2L	9845842	2L_9845842_SNP [dm3] 2L_9845842_SNP [dm6]	G	A	4.841e^-5	0.995	INTRON nAChRalpha6
2L	4233467	2L_4233467_SNP [dm3] 2L_4233467_SNP [dm6]	C	T	4.861e^-5	0.995	INTERGENIC
3R	13385559	3R_13385559_SNP [dm3] 3R_17559837_SNP [dm6]	A	G	4.868e^-5	0.995	SYNONYMOUS_CODING Hmx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4870901	X_4870901_SNP [dm3] X_4976868_SNP [dm6]	T	C	4.907e^-5	0.995	INTRON CR44833
3L	10185557	3L_10185557_SNP [dm3] 3L_10192457_SNP [dm6]	G	A	4.948e^-5	0.995	DOWNSTREAM ect INTRON ect
2R	10802507	2R_10802507_SNP [dm3] 2R_14915002_SNP [dm6]	C	A	5.045e^-5	0.995	INTRON CG10249
X	6254734	X_6254734_SNP [dm3] X_6360701_SNP [dm6]	A	T	5.053e^-5	0.995	UTR_3_PRIME kdn DOWNSTREAM swaPsi	TF binding site BDTNP1_TFBS_dl
X	9049282	X_9049282_SNP [dm3] X_9155249_SNP [dm6]	T	C	5.140e^-5	0.995	UPSTREAM His3.3B INTRON His3.3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	12247520	3R_12247520_INS [dm3] 3R_16421798_INS [dm6]	A	AATAGTA	5.251e^-5	0.995	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	5640422	X_5640422_SNP [dm3] X_5746389_SNP [dm6]	A	T	5.596e^-5	0.995	UPSTREAM IntS6 INTRON IntS6	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	19502657	X_19502657_SNP [dm3] X_19608624_SNP [dm6]	T	C	5.655e^-5	0.995	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21004769	3R_21004769_DEL [dm3] 3R_25179047_DEL [dm6]	AGGTGCAGTTTTAGGCTTAA...	A	5.667e^-5	0.995	INTRON lobo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18004394	3L_18004394_SNP [dm3] 3L_18011294_SNP [dm6]	C	A	5.719e^-5	0.995	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4860275	X_4860275_SNP [dm3] X_4966242_SNP [dm6]	T	G	5.739e^-5	0.995	INTRON CR44833	regulatory region REDfly_CRMs
2R	16994592	2R_16994592_SNP [dm3] 2R_21107087_SNP [dm6]	C	T	5.756e^-5	0.995	INTRON ktub
X	12653734	X_12653734_SNP [dm3] X_12759701_SNP [dm6]	T	A	5.839e^-5	0.995	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
X	19507082	X_19507082_SNP [dm3] X_19613049_SNP [dm6]	A	G	5.895e^-5	0.995	NON_SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn UTR_3_PRIME Tyler UPSTREAM Shawn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	13110469	3R_13110469_SNP [dm3] 3R_17284747_SNP [dm6]	G	T	5.932e^-5	0.995	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
3R	25021257	3R_25021257_SNP [dm3] 3R_29195535_SNP [dm6]	A	C	5.961e^-5	0.995	UPSTREAM CG14509 INTERGENIC
3R	3483475	3R_3483475_SNP [dm3] 3R_7657753_SNP [dm6]	A	G	6.271e^-5	0.995	UPSTREAM Nlg1 INTERGENIC
3R	3483422	3R_3483422_SNP [dm3] 3R_7657700_SNP [dm6]	A	C	6.304e^-5	0.995	UPSTREAM Nlg1 INTERGENIC
3L	10185657	3L_10185657_SNP [dm3] 3L_10192557_SNP [dm6]	C	T	6.354e^-5	0.995	DOWNSTREAM ect INTRON ect
3R	23783282	3R_23783282_SNP [dm3] 3R_27957560_SNP [dm6]	A	G	6.364e^-5	0.995	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7595460	2L_7595460_SNP [dm3] 2L_7595460_SNP [dm6]	G	T	6.484e^-5	0.995	INTERGENIC
3R	20600728	3R_20600728_SNP [dm3] 3R_24775006_SNP [dm6]	G	C	6.517e^-5	0.995	INTRON CG42331
3L	3795336	3L_3795336_SNP [dm3] 3L_3795336_SNP [dm6]	A	G	6.554e^-5	0.995	UPSTREAM CG32264 INTRON CG32264
2R	15287207	2R_15287207_SNP [dm3] 2R_19399702_SNP [dm6]	A	C	6.596e^-5	0.995	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
2L	1841571	2L_1841571_SNP [dm3] 2L_1841571_SNP [dm6]	G	A	6.651e^-5	0.995	UPSTREAM CR44074 INTRON wry
X	5361099	X_5361099_SNP [dm3] X_5467066_SNP [dm6]	T	A	6.686e^-5	0.995	INTRON SPR
2L	15564812	2L_15564812_SNP [dm3] 2L_15564812_SNP [dm6]	G	T	6.692e^-5	0.995	INTRON kek3
3R	13606812	3R_13606812_SNP [dm3] 3R_17781090_SNP [dm6]	C	G	6.773e^-5	0.995	UPSTREAM CG43102 INTRON CG43102
2R	14516091	2R_14516091_SNP [dm3] 2R_18628586_SNP [dm6]	C	T	6.796e^-5	0.995	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13606761	3R_13606761_SNP [dm3] 3R_17781039_SNP [dm6]	C	A	6.841e^-5	0.995	UPSTREAM CG43102 INTRON CG43102
X	5532353	X_5532353_SNP [dm3] X_5638320_SNP [dm6]	T	G	6.886e^-5	0.995	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11508310	3L_11508310_SNP [dm3] 3L_11515210_SNP [dm6]	A	T	6.904e^-5	0.995	INTRON CG7512
2L	4232110	2L_4232110_SNP [dm3] 2L_4232110_SNP [dm6]	C	T	6.930e^-5	0.995	INTERGENIC
2L	4232121	2L_4232121_SNP [dm3] 2L_4232121_SNP [dm6]	G	T	6.930e^-5	0.995	INTERGENIC
2L	7333613	2L_7333613_SNP [dm3] 2L_7333613_SNP [dm6]	C	T	7.046e^-5	0.995	UPSTREAM Wnt6 INTERGENIC
3R	12375763	3R_12375763_SNP [dm3] 3R_16550041_SNP [dm6]	G	T	7.138e^-5	0.995	INTRON CG42342
X	9049428	X_9049428_SNP [dm3] X_9155395_SNP [dm6]	A	G	7.347e^-5	0.995	UPSTREAM His3.3B INTRON His3.3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
X	11561304	X_11561304_SNP [dm3] X_11667271_SNP [dm6]	C	A	7.366e^-5	0.995	INTRON Ptp10D
X	19501643	X_19501643_SNP [dm3] X_19607610_SNP [dm6]	A	T	7.375e^-5	0.995	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	11247629	3L_11247629_SNP [dm3] 3L_11254529_SNP [dm6]	G	A	7.378e^-5	0.995	UTR_3_PRIME scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10605146	2L_10605146_SNP [dm3] 2L_10605146_SNP [dm6]	C	G	7.560e^-5	0.995	INTRON Trim9
3R	13102980	3R_13102980_SNP [dm3] 3R_17277258_SNP [dm6]	T	A	7.604e^-5	0.995	INTERGENIC
3R	20589743	3R_20589743_SNP [dm3] 3R_24764021_SNP [dm6]	T	G	7.623e^-5	0.995	INTRON AstA
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	7.649e^-5	0.995	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2R	7020297	2R_7020297_SNP [dm3] 2R_11132792_SNP [dm6]	T	C	7.666e^-5	0.995	INTERGENIC
2R	15287226	2R_15287226_SNP [dm3] 2R_19399721_SNP [dm6]	T	C	7.734e^-5	0.995	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
X	11561320	X_11561320_SNP [dm3] X_11667287_SNP [dm6]	T	C	7.794e^-5	0.995	INTRON Ptp10D
3L	7231467	3L_7231467_SNP [dm3] 3L_7238367_SNP [dm6]	A	T	7.905e^-5	0.995	UPSTREAM BHD & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	19833631	2R_19833631_SNP [dm3] 2R_23946108_SNP [dm6]	A	G	7.982e^-5	0.995	DOWNSTREAM CG13565 INTRON Galphas
2R	20508849	2R_20508849_SNP [dm3] 2R_24621326_SNP [dm6]	C	A	8.022e^-5	0.995	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	8184934	2R_8184934_SNP [dm3] 2R_12297429_SNP [dm6]	C	T	8.127e^-5	0.995	INTRON CG42700 EXON CR45271	TF binding site mE1_TFBS_chinmo
2R	16487275	2R_16487275_SNP [dm3] 2R_20599770_SNP [dm6]	C	G	8.321e^-5	0.995	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18002021	3L_18002021_SNP [dm3] 3L_18008921_SNP [dm6]	G	T	8.390e^-5	0.995	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14237453	X_14237453_SNP [dm3] X_14343420_SNP [dm6]	T	G	8.401e^-5	0.995	INTRON dpr8
2L	5640252	2L_5640252_SNP [dm3] 2L_5640252_SNP [dm6]	T	G	8.422e^-5	0.995	UPSTREAM mir-959 & 2 others INTRON CG31646
2R	17786585	2R_17786585_SNP [dm3] 2R_21899080_SNP [dm6]	C	T	8.484e^-5	0.995	INTRON Fili
3L	18050701	3L_18050701_SNP [dm3] 3L_18057601_SNP [dm6]	C	T	8.534e^-5	0.995	INTRON Eip75B
3L	19143870	3L_19143870_SNP [dm3] 3L_19150770_SNP [dm6]	G	A	8.580e^-5	0.995	INTRON fz2
2L	2257032	2L_2257032_SNP [dm3] 2L_2257032_SNP [dm6]	C	T	8.691e^-5	0.995	DOWNSTREAM CR44787 INTERGENIC
2L	7595487	2L_7595487_SNP [dm3] 2L_7595487_SNP [dm6]	T	C	8.843e^-5	0.995	INTERGENIC
3R	25149508	3R_25149508_SNP [dm3] 3R_29323786_SNP [dm6]	G	A	9.229e^-5	0.995	INTERGENIC
2R	18477529	2R_18477529_SNP [dm3] 2R_22590024_SNP [dm6]	T	C	9.299e^-5	0.995	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16926981	2R_16926981_SNP [dm3] 2R_21039476_SNP [dm6]	A	T	9.313e^-5	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10605142	2L_10605142_SNP [dm3] 2L_10605142_SNP [dm6]	G	A	9.321e^-5	0.995	INTRON Trim9
3R	12703939	3R_12703939_SNP [dm3] 3R_16878217_SNP [dm6]	T	A	9.395e^-5	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11943286	2L_11943286_SNP [dm3] 2L_11943286_SNP [dm6]	G	A	9.445e^-5	0.995	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2L	7755172	2L_7755172_SNP [dm3] 2L_7755172_SNP [dm6]	A	G	9.557e^-5	0.995	INTRON CG7196
3R	26131459	3R_26131459_SNP [dm3] 3R_30305737_SNP [dm6]	G	A	9.588e^-5	0.995	DOWNSTREAM CG34300 INTRON hdc
2L	11943283	2L_11943283_SNP [dm3] 2L_11943283_SNP [dm6]	A	G	9.615e^-5	0.995	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	25205232	3R_25205232_SNP [dm3] 3R_29379510_SNP [dm6]	C	T	9.722e^-5	0.995	INTRON Ptp99A
2R	12315705	2R_12315705_SNP [dm3] 2R_16428200_SNP [dm6]	A	T	9.754e^-5	0.995	INTRON Sema-2b
2R	9410308	2R_9410308_SNP [dm3] 2R_13522803_SNP [dm6]	C	T	9.818e^-5	0.995	SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16526805	2L_16526805_SNP [dm3] 2L_16526805_SNP [dm6]	G	A	9.907e^-5	0.995	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9410515	2R_9410515_SNP [dm3] 2R_13523010_SNP [dm6]	C	T	9.955e^-5	0.995	SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17847828	2R_17847828_SNP [dm3] 2R_21960323_SNP [dm6]	C	T	9.971e^-5	0.995	INTERGENIC
2R	7606528	2R_7606528_SNP [dm3] 2R_11719023_SNP [dm6]	C	G	1.021e^-4	0.995	INTRON pyr
X	15172950	X_15172950_SNP [dm3] X_15278917_SNP [dm6]	A	T	1.021e^-4	0.995	INTERGENIC
3L	6380404	3L_6380404_SNP [dm3] 3L_6387304_SNP [dm6]	T	A	1.039e^-4	0.995	INTERGENIC
3R	18782222	3R_18782222_SNP [dm3] 3R_22956500_SNP [dm6]	T	C	1.048e^-4	0.995	INTRON klg
2L	4642797	2L_4642797_SNP [dm3] 2L_4642797_SNP [dm6]	A	T	1.054e^-4	0.995	UTR_3_PRIME BG642163 UPSTREAM CG15635 DOWNSTREAM BG642163
3R	16500766	3R_16500766_DEL [dm3] 3R_20675044_DEL [dm6]	TATGACTCTTATT...	T	1.065e^-4	0.995	INTERGENIC
3L	7237056	3L_7237056_SNP [dm3] 3L_7243956_SNP [dm6]	A	T	1.093e^-4	0.995	UPSTREAM mei-P22 & 1 other DOWNSTREAM Neos INTERGENIC
3R	13102683	3R_13102683_SNP [dm3] 3R_17276961_SNP [dm6]	G	A	1.094e^-4	0.995	INTERGENIC
2R	15287536	2R_15287536_SNP [dm3] 2R_19400031_SNP [dm6]	G	T	1.095e^-4	0.995	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
2R	9114909	2R_9114909_SNP [dm3] 2R_13227404_SNP [dm6]	T	A	1.106e^-4	0.995	UTR_3_PRIME Dp DOWNSTREAM Pex13
3L	7231461	3L_7231461_SNP [dm3] 3L_7238361_SNP [dm6]	G	A	1.119e^-4	0.995	UPSTREAM BHD & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	6523308	3L_6523308_SNP [dm3] 3L_6530208_SNP [dm6]	A	C	1.121e^-4	0.995	UPSTREAM CG32396 INTRON sfl
3L	7231417	3L_7231417_SNP [dm3] 3L_7238317_SNP [dm6]	C	T	1.124e^-4	0.995	UPSTREAM BHD & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_Med
3R	17140161	3R_17140161_SNP [dm3] 3R_21314439_SNP [dm6]	G	C	1.127e^-4	0.995	EXON Hsromega
2L	16169024	2L_16169024_SNP [dm3] 2L_16169024_SNP [dm6]	G	A	1.140e^-4	0.995	INTRON Ca-alpha1D
3L	15435075	3L_15435075_SNP [dm3] 3L_15441975_SNP [dm6]	G	T	1.149e^-4	0.995	INTERGENIC
3R	12714859	3R_12714859_SNP [dm3] 3R_16889137_SNP [dm6]	G	C	1.151e^-4	0.995	INTRON iab-8
3L	19292712	3L_19292712_SNP [dm3] 3L_19299612_SNP [dm6]	T	A	1.158e^-4	0.995	DOWNSTREAM fal & 1 other INTRON pip
3R	25021180	3R_25021180_SNP [dm3] 3R_29195458_SNP [dm6]	T	A	1.158e^-4	0.995	UPSTREAM CG14509 INTERGENIC
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	1.160e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	17661350	3R_17661350_SNP [dm3] 3R_21835628_SNP [dm6]	T	G	1.167e^-4	0.995	INTERGENIC
3R	16500802	3R_16500802_SNP [dm3] 3R_20675080_SNP [dm6]	G	T	1.191e^-4	0.995	INTERGENIC
2L	7595445	2L_7595445_MNP [dm3] 2L_7595445_MNP [dm6]	TAA	ACT	1.192e^-4	0.995	INTERGENIC
X	9049296	X_9049296_SNP [dm3] X_9155263_SNP [dm6]	T	C	1.197e^-4	0.995	UPSTREAM His3.3B INTRON His3.3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	17996030	3L_17996030_SNP [dm3] 3L_18002930_SNP [dm6]	T	C	1.199e^-4	0.995	DOWNSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5592377	X_5592377_SNP [dm3] X_5698344_SNP [dm6]	A	G	1.199e^-4	0.995	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10605256	2L_10605256_DEL [dm3] 2L_10605256_DEL [dm6]	TAATTATAT	T	1.208e^-4	0.995	INTRON Trim9
2L	10521984	2L_10521984_SNP [dm3] 2L_10521984_SNP [dm6]	A	G	1.226e^-4	0.995	INTERGENIC
X	20943354	X_20943354_SNP [dm3] X_21072327_SNP [dm6]	C	T	1.238e^-4	0.995	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9025167	3L_9025167_SNP [dm3] 3L_9032067_SNP [dm6]	A	T	1.239e^-4	0.995	INTERGENIC
2L	9546121	2L_9546121_SNP [dm3] 2L_9546121_SNP [dm6]	G	A	1.250e^-4	0.995	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
X	19447753	X_19447753_DEL [dm3] X_19553720_DEL [dm6]	AC	A	1.264e^-4	0.995	INTERGENIC
2L	8706681	2L_8706681_SNP [dm3] 2L_8706681_SNP [dm6]	G	T	1.276e^-4	0.995	SYNONYMOUS_CODING CG9314 INTRON Hnf4	TF binding site mE1_TFBS_sens
2R	11511098	2R_11511098_SNP [dm3] 2R_15623593_SNP [dm6]	A	G	1.276e^-4	0.995	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	23844475	3R_23844475_SNP [dm3] 3R_28018753_SNP [dm6]	C	G	1.279e^-4	0.995	INTERGENIC
2R	14203802	2R_14203802_SNP [dm3] 2R_18316297_SNP [dm6]	T	A	1.282e^-4	0.995	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7474641	3L_7474641_SNP [dm3] 3L_7481541_SNP [dm6]	T	C	1.294e^-4	0.995	INTERGENIC
3L	1690176	3L_1690176_SNP [dm3] 3L_1690176_SNP [dm6]	C	T	1.297e^-4	0.995	INTRON CG7991
X	11561315	X_11561315_SNP [dm3] X_11667282_SNP [dm6]	C	A	1.305e^-4	0.995	INTRON Ptp10D
2R	12554423	2R_12554423_SNP [dm3] 2R_16666918_SNP [dm6]	C	T	1.314e^-4	0.995	INTRON Picot
2R	18448851	2R_18448851_SNP [dm3] 2R_22561346_SNP [dm6]	T	A	1.315e^-4	0.995	UPSTREAM CG11362 INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	9410078	2R_9410078_SNP [dm3] 2R_13522573_SNP [dm6]	C	A	1.316e^-4	0.995	NON_SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3385109	3L_3385109_SNP [dm3] 3L_3385109_SNP [dm6]	A	C	1.318e^-4	0.995	INTERGENIC
3L	4349372	3L_4349372_SNP [dm3] 3L_4349372_SNP [dm6]	C	T	1.334e^-4	0.995	INTRON Cip4
3L	4524764	3L_4524764_SNP [dm3] 3L_4524764_SNP [dm6]	G	C	1.342e^-4	0.995	INTRON Tie	TF binding site mE1_TFBS_cad
2L	5400981	2L_5400981_DEL [dm3] 2L_5400981_DEL [dm6]	GG	G	1.344e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16926953	2R_16926953_SNP [dm3] 2R_21039448_SNP [dm6]	T	C	1.351e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11240611	3L_11240611_DEL [dm3] 3L_11247511_DEL [dm6]	ACGTA	A	1.354e^-4	0.995	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11290184	2R_11290184_SNP [dm3] 2R_15402679_SNP [dm6]	C	A	1.358e^-4	0.995	INTRON CG43729
2R	16926952	2R_16926952_SNP [dm3] 2R_21039447_SNP [dm6]	T	C	1.364e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20580162	3R_20580162_SNP [dm3] 3R_24754440_SNP [dm6]	A	T	1.367e^-4	0.995	SYNONYMOUS_CODING asp DOWNSTREAM tld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20962442	X_20962442_SNP [dm3] X_21091415_SNP [dm6]	A	G	1.380e^-4	0.995	INTERGENIC
2R	11245361	2R_11245361_SNP [dm3] 2R_15357856_SNP [dm6]	A	G	1.387e^-4	0.995	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	11138375	3R_11138375_SNP [dm3] 3R_15312653_SNP [dm6]	C	T	1.388e^-4	0.995	SYNONYMOUS_CODING Tm2	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	9025202	3L_9025202_SNP [dm3] 3L_9032102_SNP [dm6]	C	T	1.390e^-4	0.995	INTERGENIC
2R	17830784	2R_17830784_SNP [dm3] 2R_21943279_SNP [dm6]	A	G	1.394e^-4	0.995	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo
X	19447757	X_19447757_SNP [dm3] X_19553724_SNP [dm6]	T	A	1.398e^-4	0.995	INTERGENIC
2L	6514862	2L_6514862_INS [dm3] 2L_6514862_INS [dm6]	G	GTTGCTCTCGCTTG...	1.398e^-4	0.995	INTRON CG31637
3L	20870354	3L_20870354_SNP [dm3] 3L_20877254_SNP [dm6]	A	G	1.398e^-4	0.995	INTRON CG32432
2L	10605280	2L_10605280_SNP [dm3] 2L_10605280_SNP [dm6]	A	G	1.399e^-4	0.995	INTRON Trim9
3R	5013961	3R_5013961_SNP [dm3] 3R_9188239_SNP [dm6]	C	T	1.399e^-4	0.995	INTRON pum	TF binding site mE1_TFBS_inv
3R	10773071	3R_10773071_SNP [dm3] 3R_14947349_SNP [dm6]	A	G	1.402e^-4	0.995	INTERGENIC
3L	1457403	3L_1457403_SNP [dm3] 3L_1457403_SNP [dm6]	G	T	1.406e^-4	0.995	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7226548	3L_7226548_SNP [dm3] 3L_7233448_SNP [dm6]	T	G	1.406e^-4	0.995	INTERGENIC
2L	3331014	2L_3331014_SNP [dm3] 2L_3331014_SNP [dm6]	T	C	1.422e^-4	0.995	SYNONYMOUS_CODING CG3285
2R	17014686	2R_17014686_SNP [dm3] 2R_21127181_SNP [dm6]	G	A	1.436e^-4	0.995	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	25021230	3R_25021230_SNP [dm3] 3R_29195508_SNP [dm6]	A	C	1.441e^-4	0.995	UPSTREAM CG14509 INTERGENIC
3R	20653430	3R_20653430_SNP [dm3] 3R_24827708_SNP [dm6]	G	C	1.443e^-4	0.995	DOWNSTREAM CG31357 INTRON RabX4
2L	9631572	2L_9631572_SNP [dm3] 2L_9631572_SNP [dm6]	A	G	1.445e^-4	0.995	INTERGENIC
2L	15126491	2L_15126491_SNP [dm3] 2L_15126491_SNP [dm6]	C	A	1.461e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22852394	3L_22852394_SNP [dm3] 3L_22859294_SNP [dm6]	T	G	1.463e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25021246	3R_25021246_SNP [dm3] 3R_29195524_SNP [dm6]	C	A	1.473e^-4	0.995	UPSTREAM CG14509 INTERGENIC
X	13356125	X_13356125_SNP [dm3] X_13462092_SNP [dm6]	C	A	1.483e^-4	0.995	INTRON Neto
3L	9325068	3L_9325068_SNP [dm3] 3L_9331968_SNP [dm6]	C	A	1.499e^-4	0.995	INTERGENIC
X	19447758	X_19447758_SNP [dm3] X_19553725_SNP [dm6]	T	G	1.502e^-4	0.995	INTERGENIC
2L	7595461	2L_7595461_SNP [dm3] 2L_7595461_SNP [dm6]	C	A	1.507e^-4	0.995	INTERGENIC
X	19447706	X_19447706_SNP [dm3] X_19553673_SNP [dm6]	C	T	1.511e^-4	0.995	INTERGENIC
3L	2123207	3L_2123207_SNP [dm3] 3L_2123207_SNP [dm6]	C	A	1.516e^-4	0.995	INTRON zormin
X	8643530	X_8643530_SNP [dm3] X_8749497_SNP [dm6]	T	G	1.517e^-4	0.995	INTERGENIC
3R	5688156	3R_5688156_SNP [dm3] 3R_9862434_SNP [dm6]	T	G	1.526e^-4	0.995	INTRON Teh1
3R	23141602	3R_23141602_SNP [dm3] 3R_27315880_SNP [dm6]	T	C	1.527e^-4	0.995	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	17657662	3R_17657662_SNP [dm3] 3R_21831940_SNP [dm6]	G	A	1.530e^-4	0.995	UPSTREAM Gr93a INTERGENIC
2L	6315435	2L_6315435_SNP [dm3] 2L_6315435_SNP [dm6]	T	C	1.566e^-4	0.995	INTRON Ddr
2R	17001642	2R_17001642_SNP [dm3] 2R_21114137_SNP [dm6]	G	A	1.579e^-4	0.995	INTRON ktub
3L	7237167	3L_7237167_SNP [dm3] 3L_7244067_SNP [dm6]	G	T	1.582e^-4	0.995	UPSTREAM mei-P22 & 1 other DOWNSTREAM Neos INTERGENIC
3L	17994810	3L_17994810_SNP [dm3] 3L_18001710_SNP [dm6]	T	C	1.587e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17362455	2R_17362455_SNP [dm3] 2R_21474950_SNP [dm6]	C	T	1.588e^-4	0.995	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7236903	3L_7236903_SNP [dm3] 3L_7243803_SNP [dm6]	G	T	1.588e^-4	0.995	NON_SYNONYMOUS_CODING mRpL50 SPLICE_SITE_REGION mRpL50 UPSTREAM mei-P22 DOWNSTREAM Neos	TF binding site mE1_TFBS_cad
3R	23267568	3R_23267568_SNP [dm3] 3R_27441846_SNP [dm6]	A	C	1.591e^-4	0.995	UPSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7333427	2L_7333427_SNP [dm3] 2L_7333427_SNP [dm6]	A	C	1.592e^-4	0.995	UPSTREAM Wnt6 INTERGENIC
2R	15214008	2R_15214008_SNP [dm3] 2R_19326503_SNP [dm6]	C	T	1.600e^-4	0.995	SYNONYMOUS_CODING Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13109053	2R_13109053_SNP [dm3] 2R_17221548_SNP [dm6]	T	C	1.602e^-4	0.995	INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22934000	3L_22934000_SNP [dm3] 3L_22940900_SNP [dm6]	G	A	1.602e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_zfh1
3R	19619941	3R_19619941_SNP [dm3] 3R_23794219_SNP [dm6]	C	T	1.611e^-4	0.995	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
X	6563701	X_6563701_SNP [dm3] X_6669668_SNP [dm6]	T	A	1.621e^-4	0.995	UTR_3_PRIME CG3198	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17390912	3R_17390912_SNP [dm3] 3R_21565190_SNP [dm6]	G	T	1.640e^-4	0.995	INTERGENIC
3L	11251237	3L_11251237_SNP [dm3] 3L_11258137_SNP [dm6]	A	G	1.641e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10923851	2R_10923851_SNP [dm3] 2R_15036346_SNP [dm6]	A	G	1.654e^-4	0.995	NON_SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
3R	18823531	3R_18823531_SNP [dm3] 3R_22997809_SNP [dm6]	T	A	1.656e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
2L	10605250	2L_10605250_SNP [dm3] 2L_10605250_SNP [dm6]	A	C	1.656e^-4	0.995	INTRON Trim9
3L	2123205	3L_2123205_SNP [dm3] 3L_2123205_SNP [dm6]	C	A	1.660e^-4	0.995	INTRON zormin
X	2272724	X_2272724_SNP [dm3] X_2378691_SNP [dm6]	T	G	1.667e^-4	0.995	SYNONYMOUS_CODING PsGEF INTRON PsGEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3328019	2L_3328019_SNP [dm3] 2L_3328019_SNP [dm6]	C	A	1.674e^-4	0.995	INTRON CG33282
3L	3883212	3L_3883212_SNP [dm3] 3L_3883212_SNP [dm6]	T	A	1.678e^-4	0.995	INTERGENIC
2R	9921017	2R_9921017_DEL [dm3] 2R_14033512_DEL [dm6]	CAGTCGGCGTCGC...	C	1.697e^-4	0.995	INTRON mam
3L	22264030	3L_22264030_SNP [dm3] 3L_22270930_SNP [dm6]	G	A	1.697e^-4	0.995	NON_SYNONYMOUS_CODING Csp INTRON Csp
X	14031940	X_14031940_SNP [dm3] X_14137907_SNP [dm6]	A	C	1.718e^-4	0.995	INTERGENIC
2L	10605243	2L_10605243_SNP [dm3] 2L_10605243_SNP [dm6]	C	T	1.724e^-4	0.995	INTRON Trim9
3R	15830501	3R_15830501_SNP [dm3] 3R_20004779_SNP [dm6]	G	T	1.724e^-4	0.995	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26534154	3R_26534154_SNP [dm3] 3R_30708432_SNP [dm6]	C	T	1.737e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21252247	3L_21252247_SNP [dm3] 3L_21259147_SNP [dm6]	T	A	1.742e^-4	0.995	DOWNSTREAM CG43218 INTRON Eip78C
2R	7560669	2R_7560669_SNP [dm3] 2R_11673164_SNP [dm6]	T	C	1.742e^-4	0.995	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8331617	2R_8331617_SNP [dm3] 2R_12444112_SNP [dm6]	C	G	1.762e^-4	0.995	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18003889	3L_18003889_SNP [dm3] 3L_18010789_SNP [dm6]	C	A	1.767e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7656791	2L_7656791_SNP [dm3] 2L_7656791_SNP [dm6]	C	T	1.772e^-4	0.995	INTRON Slob
3R	20233406	3R_20233406_SNP [dm3] 3R_24407684_SNP [dm6]	A	C	1.783e^-4	0.995	INTRON nAChRalpha1
3L	18013709	3L_18013709_DEL [dm3] 3L_18020609_DEL [dm6]	ATTCGTTTTGCCA...	A	1.786e^-4	0.995	INTRON Eip75B
3L	18020323	3L_18020323_SNP [dm3] 3L_18027223_SNP [dm6]	A	T	1.786e^-4	0.995	INTRON Eip75B
3L	18026528	3L_18026528_SNP [dm3] 3L_18033428_SNP [dm6]	A	T	1.786e^-4	0.995	INTRON Eip75B
3L	6694571	3L_6694571_INS [dm3] 3L_6701471_INS [dm6]	T	TT	1.791e^-4	0.995	INTRON SP1173
2L	6842114	2L_6842114_SNP [dm3] 2L_6842114_SNP [dm6]	A	T	1.815e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14383085	3R_14383085_SNP [dm3] 3R_18557363_SNP [dm6]	T	G	1.823e^-4	0.995	INTERGENIC
3R	23784376	3R_23784376_SNP [dm3] 3R_27958654_SNP [dm6]	G	A	1.829e^-4	0.995	NON_SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17659555	3R_17659555_SNP [dm3] 3R_21833833_SNP [dm6]	A	C	1.836e^-4	0.995	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
X	5252460	X_5252460_SNP [dm3] X_5358427_SNP [dm6]	C	G	1.839e^-4	0.995	SYNONYMOUS_CODING SK INTRON SK
X	1611956	X_1611956_SNP [dm3] X_1717923_SNP [dm6]	T	C	1.858e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18178090	3R_18178090_SNP [dm3] 3R_22352368_SNP [dm6]	T	G	1.861e^-4	0.995	SYNONYMOUS_CODING rdhB
3R	27565961	3R_27565961_SNP [dm3] 3R_31740239_SNP [dm6]	C	T	1.862e^-4	0.995	INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1143858	2L_1143858_SNP [dm3] 2L_1143858_SNP [dm6]	G	A	1.879e^-4	0.995	DOWNSTREAM CR45717 INTRON MFS3
3R	20233402	3R_20233402_SNP [dm3] 3R_24407680_SNP [dm6]	A	G	1.887e^-4	0.995	INTRON nAChRalpha1
3R	20233391	3R_20233391_SNP [dm3] 3R_24407669_SNP [dm6]	T	C	1.890e^-4	0.995	INTRON nAChRalpha1
X	20633215	X_20633215_SNP [dm3] X_20762188_SNP [dm6]	T	C	1.891e^-4	0.995	UTR_3_PRIME shakB
3R	20348523	3R_20348523_SNP [dm3] 3R_24522801_SNP [dm6]	A	G	1.927e^-4	0.995	NON_SYNONYMOUS_CODING CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site mE1_TFBS_chinmo
X	5114166	X_5114166_SNP [dm3] X_5220133_SNP [dm6]	A	G	1.935e^-4	0.995	INTRON CG15465 & 1 other
X	17346897	X_17346897_SNP [dm3] X_17452864_SNP [dm6]	G	C	1.947e^-4	0.995	UPSTREAM CG8568 INTERGENIC
2R	17787686	2R_17787686_SNP [dm3] 2R_21900181_SNP [dm6]	G	A	1.952e^-4	0.995	INTRON Fili	TF binding site BDTNP1_TFBS_dl
2R	2636021	2R_2636021_SNP [dm3] 2R_6748516_SNP [dm6]	G	A	1.955e^-4	0.995	SYNONYMOUS_CODING CG3267 UPSTREAM Eb1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20824160	3L_20824160_SNP [dm3] 3L_20831060_SNP [dm6]	C	T	1.956e^-4	0.995	INTRON Pka-R1
3L	7236914	3L_7236914_SNP [dm3] 3L_7243814_SNP [dm6]	G	T	1.962e^-4	0.995	UPSTREAM mei-P22 DOWNSTREAM Neos INTRON mRpL50	TF binding site mE1_TFBS_cad
2L	16168731	2L_16168731_SNP [dm3] 2L_16168731_SNP [dm6]	G	T	1.968e^-4	0.995	INTRON Ca-alpha1D
2R	17014689	2R_17014689_SNP [dm3] 2R_21127184_SNP [dm6]	A	G	1.981e^-4	0.995	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	17981082	3L_17981082_SNP [dm3] 3L_17987982_SNP [dm6]	T	C	1.983e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3326951	2L_3326951_SNP [dm3] 2L_3326951_SNP [dm6]	G	A	1.988e^-4	0.995	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	4909416	3L_4909416_DEL [dm3] 3L_4909416_DEL [dm6]	CGGAATGAGCAAC...	C	1.991e^-4	0.995	UPSTREAM Rh50 INTERGENIC
2L	7283514	2L_7283514_SNP [dm3] 2L_7283514_SNP [dm6]	C	G	1.993e^-4	0.995	INTERGENIC
3L	9249881	3L_9249881_SNP [dm3] 3L_9256781_SNP [dm6]	G	A	2.003e^-4	0.995	INTRON GluRIB
2R	6279404	2R_6279404_MNP [dm3] 2R_10391899_MNP [dm6]	TGT	CAA	2.009e^-4	0.995	INTRON CG42732
2R	10217120	2R_10217120_SNP [dm3] 2R_14329615_SNP [dm6]	A	T	2.010e^-4	0.995	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3R	23784173	3R_23784173_SNP [dm3] 3R_27958451_SNP [dm6]	C	A	2.025e^-4	0.995	NON_SYNONYMOUS_CODING CG42487 START_GAINED CG4884 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9013159	X_9013159_SNP [dm3] X_9119126_SNP [dm6]	C	A	2.025e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8439332	3L_8439332_SNP [dm3] 3L_8446232_SNP [dm6]	T	C	2.026e^-4	0.995	INTRON CG6983
2R	18095050	2R_18095050_INS [dm3] 2R_22207545_INS [dm6]	A	ATGGTA	2.039e^-4	0.995	DOWNSTREAM CG3264 INTRON CG3290	TF binding site mE1_TFBS_HSA
3R	12753194	3R_12753194_SNP [dm3] 3R_16927472_SNP [dm6]	T	A	2.040e^-4	0.995	UTR_3_PRIME Abd-B DOWNSTREAM Abd-B
3R	12327632	3R_12327632_SNP [dm3] 3R_16501910_SNP [dm6]	G	A	2.047e^-4	0.995	UPSTREAM decay & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1461943	2L_1461943_DEL [dm3] 2L_1461943_DEL [dm6]	GGAG	G	2.047e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25674536	3R_25674536_SNP [dm3] 3R_29848814_SNP [dm6]	G	C	2.050e^-4	0.995	INTRON Cad99C	TF binding site mE1_TFBS_cad
X	7428462	X_7428462_SNP [dm3] X_7534429_SNP [dm6]	A	G	2.052e^-4	0.995	INTRON CG32719
3L	5400478	3L_5400478_SNP [dm3] 3L_5407378_SNP [dm6]	G	T	2.057e^-4	0.995	INTERGENIC
2R	12374143	2R_12374143_INS [dm3] 2R_16486638_INS [dm6]	A	AA	2.059e^-4	0.995	UPSTREAM CG33458 INTERGENIC
2R	17014672	2R_17014672_SNP [dm3] 2R_21127167_SNP [dm6]	G	A	2.065e^-4	0.995	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	16926961	2R_16926961_SNP [dm3] 2R_21039456_SNP [dm6]	T	C	2.068e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19114008	2R_19114008_SNP [dm3] 2R_23226485_SNP [dm6]	T	A	2.071e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3328016	2L_3328016_SNP [dm3] 2L_3328016_SNP [dm6]	C	T	2.079e^-4	0.995	INTRON CG33282
3R	26551030	3R_26551030_DEL [dm3] 3R_30725308_DEL [dm6]	GTAACCATATTATTG...	G	2.089e^-4	0.995	UPSTREAM CG1340 INTERGENIC
3L	18060301	3L_18060301_SNP [dm3] 3L_18067201_SNP [dm6]	C	G	2.095e^-4	0.995	INTERGENIC
X	17347234	X_17347234_SNP [dm3] X_17453201_SNP [dm6]	G	A	2.096e^-4	0.995	UPSTREAM CG8568 INTERGENIC
2L	16168730	2L_16168730_SNP [dm3] 2L_16168730_SNP [dm6]	T	A	2.102e^-4	0.995	INTRON Ca-alpha1D
2R	11519565	2R_11519565_SNP [dm3] 2R_15632060_SNP [dm6]	T	C	2.103e^-4	0.995	INTRON CG42524
3L	20880559	3L_20880559_SNP [dm3] 3L_20887459_SNP [dm6]	A	G	2.104e^-4	0.995	EXON CR44686	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4232521	2L_4232521_DEL [dm3] 2L_4232521_DEL [dm6]	TT	T	2.107e^-4	0.995	INTERGENIC
2R	17783257	2R_17783257_SNP [dm3] 2R_21895752_SNP [dm6]	C	G	2.131e^-4	0.995	INTRON Fili
3R	10765745	3R_10765745_SNP [dm3] 3R_14940023_SNP [dm6]	C	T	2.132e^-4	0.995	INTERGENIC
2R	7266101	2R_7266101_SNP [dm3] 2R_11378596_SNP [dm6]	T	C	2.135e^-4	0.995	INTRON Tsp47F
2L	10605233	2L_10605233_SNP [dm3] 2L_10605233_SNP [dm6]	A	T	2.144e^-4	0.995	INTRON Trim9
3R	23267511	3R_23267511_SNP [dm3] 3R_27441789_SNP [dm6]	C	T	2.165e^-4	0.995	UPSTREAM CG44290 DOWNSTREAM CG43447 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20390345	X_20390345_SNP [dm3] X_20519318_SNP [dm6]	C	T	2.176e^-4	0.995	INTRON Tak1
2L	6514851	2L_6514851_DEL [dm3] 2L_6514851_DEL [dm6]	GAATAATGGC	G	2.179e^-4	0.995	INTRON CG31637
3L	12463296	3L_12463296_SNP [dm3] 3L_12470196_SNP [dm6]	A	T	2.181e^-4	0.995	UPSTREAM CG32102 INTERGENIC
2L	4052593	2L_4052593_SNP [dm3] 2L_4052593_SNP [dm6]	A	G	2.191e^-4	0.995	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	20591168	3R_20591168_SNP [dm3] 3R_24765446_SNP [dm6]	C	G	2.193e^-4	0.995	UPSTREAM AstA INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	4017590	2L_4017590_SNP [dm3] 2L_4017590_SNP [dm6]	C	T	2.195e^-4	0.995	INTERGENIC
3L	3883199	3L_3883199_SNP [dm3] 3L_3883199_SNP [dm6]	A	C	2.196e^-4	0.995	INTERGENIC
3L	20870072	3L_20870072_SNP [dm3] 3L_20876972_SNP [dm6]	G	A	2.197e^-4	0.995	INTRON CG32432
2R	17014708	2R_17014708_SNP [dm3] 2R_21127203_SNP [dm6]	C	A	2.205e^-4	0.995	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	7535644	X_7535644_INS [dm3] X_7641611_INS [dm6]	G	GTGTG	2.210e^-4	0.995	INTRON ct
2L	3331093	2L_3331093_SNP [dm3] 2L_3331093_SNP [dm6]	G	A	2.214e^-4	0.995	INTRON CG3285
2L	20795347	2L_20795347_DEL [dm3] 2L_20795347_DEL [dm6]	GGTTGTAACTG...	G	2.219e^-4	0.995	DOWNSTREAM CR44146 INTRON vari
X	21229512	X_21229512_SNP [dm3] X_21358485_SNP [dm6]	C	A	2.224e^-4	0.995	DOWNSTREAM sol INTRON Sep1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	819275	2L_819275_SNP [dm3] 2L_819275_SNP [dm6]	A	G	2.226e^-4	0.995	SYNONYMOUS_CODING CG3876 UPSTREAM Clp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11163109	2L_11163109_SNP [dm3] 2L_11163109_SNP [dm6]	T	C	2.230e^-4	0.995	INTRON Ca-beta
3L	10645237	3L_10645237_SNP [dm3] 3L_10652137_SNP [dm6]	C	T	2.241e^-4	0.995	INTRON CG32066
2L	13592848	2L_13592848_SNP [dm3] 2L_13592848_SNP [dm6]	T	A	2.244e^-4	0.995	INTRON kuz
3R	22263415	3R_22263415_SNP [dm3] 3R_26437693_SNP [dm6]	A	G	2.250e^-4	0.995	INTERGENIC
2L	2209559	2L_2209559_SNP [dm3] 2L_2209559_SNP [dm6]	T	G	2.258e^-4	0.995	UPSTREAM CG33124 DOWNSTREAM CG15385 INTERGENIC
2R	18095055	2R_18095055_SNP [dm3] 2R_22207550_SNP [dm6]	G	T	2.259e^-4	0.995	DOWNSTREAM CG3264 INTRON CG3290	TF binding site mE1_TFBS_HSA
2L	4052800	2L_4052800_SNP [dm3] 2L_4052800_SNP [dm6]	C	A	2.259e^-4	0.995	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	5025410	3L_5025410_SNP [dm3] 3L_5025410_SNP [dm6]	T	A	2.261e^-4	0.995	INTRON Con
2L	8057671	2L_8057671_SNP [dm3] 2L_8057671_SNP [dm6]	G	A	2.269e^-4	0.995	SYNONYMOUS_CODING poe
3L	6445596	3L_6445596_SNP [dm3] 3L_6452496_SNP [dm6]	T	A	2.276e^-4	0.995	INTRON CG42747
2R	2014773	2R_2014773_SNP [dm3] 2R_6127268_SNP [dm6]	T	A	2.281e^-4	0.995	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5637258	X_5637258_SNP [dm3] X_5743225_SNP [dm6]	T	A	2.298e^-4	0.995	SYNONYMOUS_CODING IntS6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2L	17636052	2L_17636052_SNP [dm3] 2L_17636052_SNP [dm6]	G	A	2.317e^-4	0.995	INTERGENIC
2L	13739460	2L_13739460_SNP [dm3] 2L_13739460_SNP [dm6]	C	G	2.319e^-4	0.995	INTERGENIC
3L	7935468	3L_7935468_SNP [dm3] 3L_7942368_SNP [dm6]	T	C	2.356e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_cad
X	5640166	X_5640166_SNP [dm3] X_5746133_SNP [dm6]	A	T	2.366e^-4	0.995	INTRON IntS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22321682	3L_22321682_SNP [dm3] 3L_22328582_SNP [dm6]	T	A	2.382e^-4	0.995	INTRON Ten-m	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18051860	3L_18051860_SNP [dm3] 3L_18058760_SNP [dm6]	T	C	2.389e^-4	0.995	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11407382	2R_11407382_SNP [dm3] 2R_15519877_SNP [dm6]	A	G	2.393e^-4	0.995	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
3R	17140247	3R_17140247_SNP [dm3] 3R_21314525_SNP [dm6]	A	C	2.406e^-4	0.995	EXON Hsromega
2L	10605140	2L_10605140_SNP [dm3] 2L_10605140_SNP [dm6]	T	C	2.406e^-4	0.995	INTRON Trim9
2R	12693410	2R_12693410_SNP [dm3] 2R_16805905_SNP [dm6]	G	T	2.411e^-4	0.995	INTERGENIC
2L	18675812	2L_18675812_SNP [dm3] 2L_18675812_SNP [dm6]	C	T	2.412e^-4	0.995	SYNONYMOUS_CODING Mst36Fa UPSTREAM Mst36Fb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7960978	X_7960978_SNP [dm3] X_8066945_SNP [dm6]	C	T	2.431e^-4	0.995	INTRON mys
2L	10414173	2L_10414173_SNP [dm3] 2L_10414173_SNP [dm6]	C	G	2.432e^-4	0.995	UPSTREAM CG5355 & 1 other INTRON Klp31E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	13438721	2R_13438721_SNP [dm3] 2R_17551216_SNP [dm6]	C	T	2.433e^-4	0.995	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3R	7192797	3R_7192797_SNP [dm3] 3R_11367075_SNP [dm6]	A	C	2.450e^-4	0.995	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7226540	3L_7226540_SNP [dm3] 3L_7233440_SNP [dm6]	C	A	2.453e^-4	0.995	INTERGENIC
3L	1692291	3L_1692291_SNP [dm3] 3L_1692291_SNP [dm6]	T	C	2.455e^-4	0.995	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18026051	3L_18026051_SNP [dm3] 3L_18032951_SNP [dm6]	T	G	2.471e^-4	0.995	INTRON Eip75B
3R	25310884	3R_25310884_SNP [dm3] 3R_29485162_SNP [dm6]	A	T	2.477e^-4	0.995	UTR_3_PRIME Ptp99A & 1 other DOWNSTREAM Ptp99A
3L	18013677	3L_18013677_SNP [dm3] 3L_18020577_SNP [dm6]	A	G	2.480e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	27167001	3R_27167001_SNP [dm3] 3R_31341279_SNP [dm6]	C	T	2.482e^-4	0.995	INTRON CG34347
3R	19868664	3R_19868664_SNP [dm3] 3R_24042942_SNP [dm6]	C	T	2.491e^-4	0.995	UTR_3_PRIME spas DOWNSTREAM Rox8 & 1 other
X	16431021	X_16431021_SNP [dm3] X_16536988_SNP [dm6]	C	A	2.493e^-4	0.995	INTERGENIC
2L	7281472	2L_7281472_SNP [dm3] 2L_7281472_SNP [dm6]	T	C	2.494e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13102854	3R_13102854_SNP [dm3] 3R_17277132_SNP [dm6]	C	T	2.508e^-4	0.995	INTERGENIC
2R	15124444	2R_15124444_SNP [dm3] 2R_19236939_SNP [dm6]	C	T	2.510e^-4	0.995	SPLICE_SITE_REGION cora INTRON cora
2R	19357389	2R_19357389_DEL [dm3] 2R_23469866_DEL [dm6]	GG	G	2.521e^-4	0.995	DOWNSTREAM Or59b INTRON CG43795
3L	9025216	3L_9025216_SNP [dm3] 3L_9032116_SNP [dm6]	T	C	2.533e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11785480	2R_11785480_SNP [dm3] 2R_15897975_SNP [dm6]	G	A	2.538e^-4	0.995	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	15432969	2R_15432969_SNP [dm3] 2R_19545464_SNP [dm6]	A	T	2.549e^-4	0.995	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17255046	X_17255046_SNP [dm3] X_17361013_SNP [dm6]	A	G	2.565e^-4	0.995	INTERGENIC
3R	20932492	3R_20932492_SNP [dm3] 3R_25106770_SNP [dm6]	C	T	2.566e^-4	0.995	NON_SYNONYMOUS_CODING CG34027
3L	4113298	3L_4113298_SNP [dm3] 3L_4113298_SNP [dm6]	G	A	2.571e^-4	0.995	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8608590	3R_8608590_SNP [dm3] 3R_12782868_SNP [dm6]	A	T	2.572e^-4	0.995	INTRON beat-Vc
3L	20863906	3L_20863906_SNP [dm3] 3L_20870806_SNP [dm6]	A	C	2.587e^-4	0.995	INTRON CG32432
2R	19120090	2R_19120090_SNP [dm3] 2R_23232567_SNP [dm6]	T	A	2.587e^-4	0.995	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
X	14026481	X_14026481_SNP [dm3] X_14132448_SNP [dm6]	C	A	2.597e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7277676	2L_7277676_SNP [dm3] 2L_7277676_SNP [dm6]	A	G	2.602e^-4	0.995	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
2L	14157075	2L_14157075_SNP [dm3] 2L_14157075_SNP [dm6]	C	T	2.612e^-4	0.995	SYNONYMOUS_CODING CG17341
2L	4017534	2L_4017534_SNP [dm3] 2L_4017534_SNP [dm6]	A	T	2.621e^-4	0.995	INTERGENIC
3L	18016249	3L_18016249_SNP [dm3] 3L_18023149_SNP [dm6]	A	T	2.626e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6973866	2L_6973866_SNP [dm3] 2L_6973866_SNP [dm6]	G	A	2.637e^-4	0.995	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	6374552	3L_6374552_SNP [dm3] 3L_6381452_SNP [dm6]	C	T	2.654e^-4	0.995	INTERGENIC
X	13266014	X_13266014_DEL [dm3] X_13371981_DEL [dm6]	TT	T	2.654e^-4	0.995	INTRON CG1640	TF binding site BDTNP1_TFBS_dl
2R	2627908	2R_2627908_SNP [dm3] 2R_6740403_SNP [dm6]	T	A	2.673e^-4	0.995	UTR_5_PRIME l_2_01289
3R	17140232	3R_17140232_SNP [dm3] 3R_21314510_SNP [dm6]	A	C	2.676e^-4	0.995	EXON Hsromega
3L	11102992	3L_11102992_SNP [dm3] 3L_11109892_SNP [dm6]	C	T	2.683e^-4	0.995	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20537994	X_20537994_SNP [dm3] X_20666967_SNP [dm6]	C	T	2.686e^-4	0.995	INTRON CG1835
2R	9417344	2R_9417344_SNP [dm3] 2R_13529839_SNP [dm6]	C	G	2.686e^-4	0.995	UTR_5_PRIME Vmat INTRON Vmat
3L	10257494	3L_10257494_SNP [dm3] 3L_10264394_SNP [dm6]	T	G	2.690e^-4	0.995	NON_SYNONYMOUS_CODING can
X	5635761	X_5635761_SNP [dm3] X_5741728_SNP [dm6]	C	G	2.692e^-4	0.995	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22267901	3R_22267901_SNP [dm3] 3R_26442179_SNP [dm6]	C	T	2.695e^-4	0.995	INTRON tx
3L	22933505	3L_22933505_SNP [dm3] 3L_22940405_SNP [dm6]	A	G	2.697e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20879788	3L_20879788_SNP [dm3] 3L_20886688_SNP [dm6]	T	C	2.703e^-4	0.995	DOWNSTREAM CR44686 INTERGENIC
2R	16217874	2R_16217874_SNP [dm3] 2R_20330369_SNP [dm6]	C	A	2.727e^-4	0.995	UTR_3_PRIME CG8929	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26551083	3R_26551083_SNP [dm3] 3R_30725361_SNP [dm6]	C	A	2.728e^-4	0.995	UPSTREAM CG1340 INTERGENIC
3L	15320856	3L_15320856_SNP [dm3] 3L_15327756_SNP [dm6]	T	A	2.736e^-4	0.995	INTERGENIC
3L	13921731	3L_13921731_SNP [dm3] 3L_13928631_SNP [dm6]	A	G	2.754e^-4	0.995	SYNONYMOUS_CODING CG8833 UPSTREAM Gl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1994349	2R_1994349_SNP [dm3] 2R_6106844_SNP [dm6]	A	C	2.760e^-4	0.995	INTRON EcR
2L	8755975	2L_8755975_DEL [dm3] 2L_8755975_DEL [dm6]	GA	T	2.774e^-4	0.995	INTERGENIC
2L	4052802	2L_4052802_SNP [dm3] 2L_4052802_SNP [dm6]	A	G	2.779e^-4	0.995	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	9765953	2R_9765953_SNP [dm3] 2R_13878448_SNP [dm6]	G	A	2.783e^-4	0.995	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	17663147	3R_17663147_SNP [dm3] 3R_21837425_SNP [dm6]	G	A	2.793e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12680367	3R_12680367_SNP [dm3] 3R_16854645_SNP [dm6]	C	A	2.798e^-4	0.995	DOWNSTREAM iab-8 INTRON iab-8 & 1 other EXON iab-4
3R	13102730	3R_13102730_SNP [dm3] 3R_17277008_SNP [dm6]	C	A	2.800e^-4	0.995	INTERGENIC
3L	11333252	3L_11333252_SNP [dm3] 3L_11340152_SNP [dm6]	C	T	2.809e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5494988	2L_5494988_SNP [dm3] 2L_5494988_SNP [dm6]	C	T	2.812e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14735578	3R_14735578_SNP [dm3] 3R_18909856_SNP [dm6]	A	T	2.815e^-4	0.995	UTR_3_PRIME EndoA
3R	17140178	3R_17140178_SNP [dm3] 3R_21314456_SNP [dm6]	T	C	2.828e^-4	0.995	EXON Hsromega
2R	9368194	2R_9368194_SNP [dm3] 2R_13480689_SNP [dm6]	A	C	2.834e^-4	0.995	INTRON arr
2L	12512137	2L_12512137_SNP [dm3] 2L_12512137_SNP [dm6]	G	C	2.840e^-4	0.995	INTRON bun
2R	14905524	2R_14905524_SNP [dm3] 2R_19018019_SNP [dm6]	T	C	2.840e^-4	0.995	INTERGENIC
3L	20882628	3L_20882628_SNP [dm3] 3L_20889528_SNP [dm6]	C	A	2.842e^-4	0.995	INTERGENIC
3R	25021199	3R_25021199_SNP [dm3] 3R_29195477_SNP [dm6]	T	C	2.842e^-4	0.995	UPSTREAM CG14509 INTERGENIC
3L	20853822	3L_20853822_SNP [dm3] 3L_20860722_SNP [dm6]	A	T	2.843e^-4	0.995	INTRON CG32432
X	5636307	X_5636307_SNP [dm3] X_5742274_SNP [dm6]	C	T	2.846e^-4	0.995	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16500797	3R_16500797_SNP [dm3] 3R_20675075_SNP [dm6]	A	G	2.853e^-4	0.995	INTERGENIC
3R	15830504	3R_15830504_INS [dm3] 3R_20004782_INS [dm6]	C	TACATT	2.864e^-4	0.995	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8380104	3L_8380104_SNP [dm3] 3L_8387004_SNP [dm6]	A	T	2.871e^-4	0.995	NON_SYNONYMOUS_CODING ImpE1
2L	17644321	2L_17644321_SNP [dm3] 2L_17644321_SNP [dm6]	T	C	2.888e^-4	0.995	DOWNSTREAM CR45699 INTERGENIC
2L	4052744	2L_4052744_SNP [dm3] 2L_4052744_SNP [dm6]	A	T	2.898e^-4	0.995	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	19254185	3L_19254185_SNP [dm3] 3L_19261085_SNP [dm6]	C	T	2.903e^-4	0.995	UPSTREAM Bet1 & 1 other DOWNSTREAM CR45210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3794654	3L_3794654_SNP [dm3] 3L_3794654_SNP [dm6]	A	C	2.903e^-4	0.995	START_GAINED CG32264 UTR_5_PRIME CG32264 INTRON CG32264
2L	5486459	2L_5486459_SNP [dm3] 2L_5486459_SNP [dm6]	T	A	2.904e^-4	0.995	UPSTREAM CR45287 INTERGENIC
X	17347278	X_17347278_SNP [dm3] X_17453245_SNP [dm6]	T	G	2.904e^-4	0.995	UPSTREAM CG8568 INTERGENIC
X	1658141	X_1658141_SNP [dm3] X_1764108_SNP [dm6]	G	A	2.909e^-4	0.995	INTERGENIC
2L	3508779	2L_3508779_SNP [dm3] 2L_3508779_SNP [dm6]	G	C	2.910e^-4	0.995	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
3L	10714201	3L_10714201_SNP [dm3] 3L_10721101_SNP [dm6]	C	T	2.914e^-4	0.995	INTERGENIC
2R	13498054	2R_13498054_SNP [dm3] 2R_17610549_SNP [dm6]	A	C	2.916e^-4	0.995	INTRON CG10936
2R	2624276	2R_2624276_SNP [dm3] 2R_6736771_SNP [dm6]	C	T	2.925e^-4	0.995	INTRON l_2_01289
2L	11889824	2L_11889824_SNP [dm3] 2L_11889824_SNP [dm6]	C	A	2.925e^-4	0.995	INTRON Pde1c
3L	8975163	3L_8975163_SNP [dm3] 3L_8982063_SNP [dm6]	C	T	2.927e^-4	0.995	UPSTREAM CG13314 DOWNSTREAM Galk INTRON CG13314
2R	13564817	2R_13564817_SNP [dm3] 2R_17677312_SNP [dm6]	G	A	2.927e^-4	0.995	INTRON Sema-1b
3R	27167287	3R_27167287_SNP [dm3] 3R_31341565_SNP [dm6]	C	T	2.927e^-4	0.995	INTRON CG34347
2L	4185405	2L_4185405_SNP [dm3] 2L_4185405_SNP [dm6]	C	A	2.928e^-4	0.995	DOWNSTREAM CG31961 EXON CR44057
3R	18572180	3R_18572180_SNP [dm3] 3R_22746458_SNP [dm6]	C	G	2.941e^-4	0.995	UTR_3_PRIME HP1c & 1 other UPSTREAM vret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17140251	3R_17140251_SNP [dm3] 3R_21314529_SNP [dm6]	C	T	2.942e^-4	0.995	EXON Hsromega
2L	6105977	2L_6105977_SNP [dm3] 2L_6105977_SNP [dm6]	G	A	2.943e^-4	0.995	INTRON stai
X	13179387	X_13179387_SNP [dm3] X_13285354_SNP [dm6]	A	C	2.944e^-4	0.995	UTR_5_PRIME HDAC4 UPSTREAM CG15743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	12629091	2R_12629091_SNP [dm3] 2R_16741586_SNP [dm6]	T	C	2.945e^-4	0.995	INTERGENIC
2L	798394	2L_798394_SNP [dm3] 2L_798394_SNP [dm6]	G	A	2.946e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9767013	2R_9767013_SNP [dm3] 2R_13879508_SNP [dm6]	C	A	2.949e^-4	0.995	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10091340	3L_10091340_SNP [dm3] 3L_10098240_SNP [dm6]	T	C	2.949e^-4	0.995	UPSTREAM CG42825 INTRON dpr6
3L	19292714	3L_19292714_SNP [dm3] 3L_19299614_SNP [dm6]	A	T	2.949e^-4	0.995	DOWNSTREAM fal & 1 other INTRON pip
3R	17661320	3R_17661320_SNP [dm3] 3R_21835598_SNP [dm6]	G	T	2.950e^-4	0.995	INTERGENIC
X	5739518	X_5739518_SNP [dm3] X_5845485_SNP [dm6]	T	C	2.951e^-4	0.995	SYNONYMOUS_CODING CG12729
2L	9347496	2L_9347496_SNP [dm3] 2L_9347496_SNP [dm6]	T	G	2.952e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	10575422	3L_10575422_SNP [dm3] 3L_10582322_SNP [dm6]	G	A	2.953e^-4	0.995	INTRON A2bp1
2L	17062623	2L_17062623_SNP [dm3] 2L_17062623_SNP [dm6]	C	T	2.954e^-4	0.995	INTERGENIC
2R	17739704	2R_17739704_SNP [dm3] 2R_21852199_SNP [dm6]	A	G	2.965e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20002534	3R_20002534_SNP [dm3] 3R_24176812_SNP [dm6]	T	G	2.967e^-4	0.995	INTRON CG13606
X	20411421	X_20411421_DEL [dm3] X_20540394_DEL [dm6]	ATG	C	2.985e^-4	0.995	INTRON RunxB	TF binding site mE1_TFBS_inv
3R	8391774	3R_8391774_INS [dm3] 3R_12566052_INS [dm6]	T	AA	2.990e^-4	0.995	INTRON Octbeta2R
2R	20507919	2R_20507919_SNP [dm3] 2R_24620396_SNP [dm6]	T	A	2.996e^-4	0.995	INTRON CG13594	TF binding site mE1_TFBS_chinmo
X	20634417	X_20634417_SNP [dm3] X_20763390_SNP [dm6]	C	G	3.016e^-4	0.995	UTR_3_PRIME shakB
2L	4233660	2L_4233660_SNP [dm3] 2L_4233660_SNP [dm6]	C	T	3.031e^-4	0.995	INTERGENIC
3L	20859963	3L_20859963_SNP [dm3] 3L_20866863_SNP [dm6]	C	A	3.031e^-4	0.995	INTRON CG32432
X	8235638	X_8235638_SNP [dm3] X_8341605_SNP [dm6]	T	C	3.035e^-4	0.995	INTRON nAChRalpha3
3L	4511034	3L_4511034_SNP [dm3] 3L_4511034_SNP [dm6]	T	C	3.038e^-4	0.995	UTR_3_PRIME Tie
3R	23784486	3R_23784486_SNP [dm3] 3R_27958764_SNP [dm6]	C	T	3.040e^-4	0.995	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	7020287	2R_7020287_SNP [dm3] 2R_11132782_SNP [dm6]	C	A	3.042e^-4	0.995	INTERGENIC
X	1611801	X_1611801_SNP [dm3] X_1717768_SNP [dm6]	C	T	3.060e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9866507	2L_9866507_SNP [dm3] 2L_9866507_SNP [dm6]	C	A	3.062e^-4	0.995	INTRON nAChRalpha6
3R	16501004	3R_16501004_SNP [dm3] 3R_20675282_SNP [dm6]	A	T	3.066e^-4	0.995	DOWNSTREAM CG4000 INTERGENIC
2R	10860969	2R_10860969_DEL [dm3] 2R_14973464_DEL [dm6]	AAG	A	3.067e^-4	0.995	INTRON ckn
3R	21446691	3R_21446691_SNP [dm3] 3R_25620969_SNP [dm6]	G	A	3.077e^-4	0.995	DOWNSTREAM CG5071 INTRON Npl4
2L	7333256	2L_7333256_SNP [dm3] 2L_7333256_SNP [dm6]	T	A	3.081e^-4	0.995	UPSTREAM Wnt6 INTERGENIC
X	11500882	X_11500882_SNP [dm3] X_11606849_SNP [dm6]	A	G	3.087e^-4	0.995	SYNONYMOUS_CODING CG2247 DOWNSTREAM rho-4	TF binding site BDTNP1_TFBS_sna
2L	11943275	2L_11943275_DEL [dm3] 2L_11943275_DEL [dm6]	TT	A	3.087e^-4	0.995	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2L	7283493	2L_7283493_DEL [dm3] 2L_7283493_DEL [dm6]	GAAAGGG	G	3.088e^-4	0.995	INTERGENIC
2L	7283536	2L_7283536_DEL [dm3] 2L_7283536_DEL [dm6]	ATGC	A	3.088e^-4	0.995	INTERGENIC
3L	12365114	3L_12365114_SNP [dm3] 3L_12372014_SNP [dm6]	G	A	3.088e^-4	0.995	SYNONYMOUS_CODING Ncc69	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3312590	3L_3312590_SNP [dm3] 3L_3312590_SNP [dm6]	T	C	3.101e^-4	0.995	SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19317815	3R_19317815_SNP [dm3] 3R_23492093_SNP [dm6]	T	C	3.104e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9544200	3L_9544200_SNP [dm3] 3L_9551100_SNP [dm6]	G	A	3.106e^-4	0.995	INTRON CG42673
2R	16161162	2R_16161162_SNP [dm3] 2R_20273657_SNP [dm6]	G	A	3.109e^-4	0.995	SYNONYMOUS_CODING CG10444 UPSTREAM CG11788	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27377160	3R_27377160_SNP [dm3] 3R_31551438_SNP [dm6]	A	G	3.111e^-4	0.995	INTRON nyo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1874389	2L_1874389_SNP [dm3] 2L_1874389_SNP [dm6]	C	T	3.116e^-4	0.995	DOWNSTREAM CR44075 INTRON CG31663
2L	7283601	2L_7283601_SNP [dm3] 2L_7283601_SNP [dm6]	T	G	3.116e^-4	0.995	INTERGENIC
3R	21059455	3R_21059455_SNP [dm3] 3R_25233733_SNP [dm6]	C	G	3.117e^-4	0.995	UTR_3_PRIME CG10420	TF binding site mE1_TFBS_HSA
3L	20859530	3L_20859530_SNP [dm3] 3L_20866430_SNP [dm6]	C	T	3.126e^-4	0.995	INTRON CG32432
X	8730889	X_8730889_SNP [dm3] X_8836856_SNP [dm6]	G	A	3.135e^-4	0.995	DOWNSTREAM CR45537 INTERGENIC
2R	16199262	2R_16199262_SNP [dm3] 2R_20311757_SNP [dm6]	G	A	3.136e^-4	0.995	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3331108	2L_3331108_SNP [dm3] 2L_3331108_SNP [dm6]	C	T	3.140e^-4	0.995	INTRON CG3285
3L	20863917	3L_20863917_SNP [dm3] 3L_20870817_SNP [dm6]	T	C	3.150e^-4	0.995	INTRON CG32432
3L	6698084	3L_6698084_SNP [dm3] 3L_6704984_SNP [dm6]	A	G	3.153e^-4	0.995	UTR_5_PRIME CG8519
3R	21446690	3R_21446690_SNP [dm3] 3R_25620968_SNP [dm6]	T	A	3.153e^-4	0.995	DOWNSTREAM CG5071 INTRON Npl4
X	12992686	X_12992686_SNP [dm3] X_13098653_SNP [dm6]	G	C	3.154e^-4	0.995	INTRON CG43313
2R	15287338	2R_15287338_SNP [dm3] 2R_19399833_SNP [dm6]	A	G	3.156e^-4	0.995	UTR_3_PRIME hts INTRON hts EXON CR43430
3L	11102990	3L_11102990_SNP [dm3] 3L_11109890_SNP [dm6]	G	A	3.162e^-4	0.995	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2598530	2R_2598530_SNP [dm3] 2R_6711025_SNP [dm6]	T	G	3.184e^-4	0.995	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16164601	2L_16164601_SNP [dm3] 2L_16164601_SNP [dm6]	G	A	3.191e^-4	0.995	INTERGENIC
3R	25021296	3R_25021296_SNP [dm3] 3R_29195574_SNP [dm6]	A	G	3.205e^-4	0.995	UPSTREAM CG14509 INTERGENIC
3L	20893612	3L_20893612_SNP [dm3] 3L_20900512_SNP [dm6]	G	A	3.211e^-4	0.995	INTERGENIC
2R	20153239	2R_20153239_SNP [dm3] 2R_24265716_SNP [dm6]	T	C	3.224e^-4	0.995	DOWNSTREAM CG3376 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7565778	2R_7565778_SNP [dm3] 2R_11678273_SNP [dm6]	G	A	3.225e^-4	0.995	SYNONYMOUS_CODING Roc2 DOWNSTREAM Tret1-2
X	18275481	X_18275481_SNP [dm3] X_18381448_SNP [dm6]	A	C	3.228e^-4	0.995	UTR_3_PRIME CG6179 DOWNSTREAM betaCOP
X	19663697	X_19663697_SNP [dm3] X_19769664_SNP [dm6]	T	C	3.231e^-4	0.995	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	12641682	2R_12641682_INS [dm3] 2R_16754177_INS [dm6]	T	TGTT	3.233e^-4	0.995	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	14418793	2R_14418793_SNP [dm3] 2R_18531288_SNP [dm6]	C	A	3.233e^-4	0.995	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	3994079	2L_3994079_SNP [dm3] 2L_3994079_SNP [dm6]	C	T	3.238e^-4	0.995	INTERGENIC
X	19505388	X_19505388_SNP [dm3] X_19611355_SNP [dm6]	C	A	3.246e^-4	0.995	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other DOWNSTREAM CG14207
2R	12641671	2R_12641671_SNP [dm3] 2R_16754166_SNP [dm6]	T	A	3.250e^-4	0.995	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	16487249	2R_16487249_SNP [dm3] 2R_20599744_SNP [dm6]	C	A	3.259e^-4	0.995	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6183994	2L_6183994_SNP [dm3] 2L_6183994_SNP [dm6]	G	C	3.265e^-4	0.995	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6315432	2L_6315432_SNP [dm3] 2L_6315432_SNP [dm6]	T	G	3.269e^-4	0.995	INTRON Ddr
3R	17140235	3R_17140235_SNP [dm3] 3R_21314513_SNP [dm6]	T	C	3.270e^-4	0.995	EXON Hsromega
3R	27377113	3R_27377113_SNP [dm3] 3R_31551391_SNP [dm6]	T	G	3.275e^-4	0.995	INTRON nyo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7089891	3L_7089891_SNP [dm3] 3L_7096791_SNP [dm6]	C	T	3.277e^-4	0.995	INTRON form3
X	20633260	X_20633260_SNP [dm3] X_20762233_SNP [dm6]	T	C	3.279e^-4	0.995	UTR_3_PRIME shakB
2R	13535674	2R_13535674_SNP [dm3] 2R_17648169_SNP [dm6]	A	T	3.285e^-4	0.995	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA
3L	7170161	3L_7170161_SNP [dm3] 3L_7177061_SNP [dm6]	G	A	3.289e^-4	0.995	INTRON Dscam2
2L	12453015	2L_12453015_SNP [dm3] 2L_12453015_SNP [dm6]	T	C	3.294e^-4	0.995	SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
3R	13606835	3R_13606835_SNP [dm3] 3R_17781113_SNP [dm6]	C	T	3.295e^-4	0.995	UPSTREAM CG43102 INTRON CG43102
2R	15944813	2R_15944813_SNP [dm3] 2R_20057308_SNP [dm6]	G	A	3.296e^-4	0.995	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7766626	2L_7766626_SNP [dm3] 2L_7766626_SNP [dm6]	G	A	3.297e^-4	0.995	DOWNSTREAM CG7196 INTERGENIC
X	20503438	X_20503438_SNP [dm3] X_20632411_SNP [dm6]	C	T	3.302e^-4	0.995	INTERGENIC
2L	1907206	2L_1907206_SNP [dm3] 2L_1907206_SNP [dm6]	A	G	3.306e^-4	0.995	INTRON CG7337
2R	19098023	2R_19098023_SNP [dm3] 2R_23210500_SNP [dm6]	A	T	3.309e^-4	0.995	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7283510	2L_7283510_SNP [dm3] 2L_7283510_SNP [dm6]	G	A	3.313e^-4	0.995	INTERGENIC
3L	7236768	3L_7236768_SNP [dm3] 3L_7243668_SNP [dm6]	G	C	3.315e^-4	0.995	UPSTREAM mei-P22 DOWNSTREAM Neos INTRON mRpL50	TF binding site mE1_TFBS_cad
3R	25021298	3R_25021298_INS [dm3] 3R_29195576_INS [dm6]	T	TCCCCTA	3.317e^-4	0.995	UPSTREAM CG14509 INTERGENIC
3R	23141232	3R_23141232_DEL [dm3] 3R_27315510_DEL [dm6]	TTCGTCCGT	T	3.322e^-4	0.995	INTRON CG3339	TF binding site mE1_TFBS_chinmo
2R	10882792	2R_10882792_SNP [dm3] 2R_14995287_SNP [dm6]	T	G	3.322e^-4	0.995	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6316845	2L_6316845_SNP [dm3] 2L_6316845_SNP [dm6]	C	T	3.328e^-4	0.995	INTRON Ddr
3L	18016968	3L_18016968_SNP [dm3] 3L_18023868_SNP [dm6]	G	T	3.337e^-4	0.995	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	6074537	3L_6074537_SNP [dm3] 3L_6081437_SNP [dm6]	G	A	3.339e^-4	0.995	UTR_3_PRIME CG6619	TF binding site mE1_TFBS_cad
3R	12703361	3R_12703361_SNP [dm3] 3R_16877639_SNP [dm6]	C	T	3.358e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1909025	2L_1909025_SNP [dm3] 2L_1909025_SNP [dm6]	A	G	3.366e^-4	0.995	INTRON CG7337
3L	8272272	3L_8272272_SNP [dm3] 3L_8279172_SNP [dm6]	T	C	3.371e^-4	0.995	SYNONYMOUS_CODING Dscam4
2L	3752970	2L_3752970_SNP [dm3] 2L_3752970_SNP [dm6]	C	T	3.389e^-4	0.995	UTR_3_PRIME CG10019
3L	7090639	3L_7090639_SNP [dm3] 3L_7097539_SNP [dm6]	C	A	3.400e^-4	0.995	INTRON form3
3L	4511204	3L_4511204_SNP [dm3] 3L_4511204_SNP [dm6]	C	T	3.421e^-4	0.995	UTR_3_PRIME Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17928345	2R_17928345_SNP [dm3] 2R_22040840_SNP [dm6]	A	G	3.450e^-4	0.995	DOWNSTREAM PpD5 INTERGENIC
2R	17014707	2R_17014707_SNP [dm3] 2R_21127202_SNP [dm6]	T	C	3.457e^-4	0.995	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	637262	2L_637262_SNP [dm3] 2L_637262_SNP [dm6]	C	A	3.462e^-4	0.995	INTERGENIC
3L	20863774	3L_20863774_SNP [dm3] 3L_20870674_SNP [dm6]	A	T	3.464e^-4	0.995	INTRON CG32432
2R	11143212	2R_11143212_SNP [dm3] 2R_15255707_SNP [dm6]	C	T	3.475e^-4	0.995	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13111173	3R_13111173_SNP [dm3] 3R_17285451_SNP [dm6]	G	A	3.493e^-4	0.995	DOWNSTREAM CG31418 & 2 others INTERGENIC
3L	5265320	3L_5265320_SNP [dm3] 3L_5272220_SNP [dm6]	G	A	3.502e^-4	0.995	UTR_5_PRIME shep INTRON shep
3L	2014421	3L_2014421_SNP [dm3] 3L_2014421_SNP [dm6]	T	C	3.507e^-4	0.995	INTERGENIC
X	12165114	X_12165114_DEL [dm3] X_12271081_DEL [dm6]	AC	A	3.516e^-4	0.995	INTRON Ten-a
2R	15944775	2R_15944775_SNP [dm3] 2R_20057270_SNP [dm6]	C	T	3.535e^-4	0.995	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18002865	3L_18002865_SNP [dm3] 3L_18009765_SNP [dm6]	G	A	3.542e^-4	0.995	INTRON Eip75B
2R	8166716	2R_8166716_INS [dm3] 2R_12279211_INS [dm6]	T	TAATAATAATTAATAATAT...	3.544e^-4	0.995	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	15188212	3R_15188212_SNP [dm3] 3R_19362490_SNP [dm6]	G	A	3.575e^-4	0.995	INTERGENIC
3R	15188247	3R_15188247_SNP [dm3] 3R_19362525_SNP [dm6]	C	G	3.575e^-4	0.995	INTERGENIC
2L	1856218	2L_1856218_SNP [dm3] 2L_1856218_SNP [dm6]	A	G	3.577e^-4	0.995	INTRON wry
3L	8890608	3L_8890608_SNP [dm3] 3L_8897508_SNP [dm6]	G	A	3.580e^-4	0.995	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	22321101	3L_22321101_INS [dm3] 3L_22328001_INS [dm6]	T	TTGT	3.582e^-4	0.995	INTRON Ten-m	TF binding site mE1_TFBS_cad
2L	12501049	2L_12501049_SNP [dm3] 2L_12501049_SNP [dm6]	T	C	3.588e^-4	0.995	INTRON bun
3R	9979728	3R_9979728_INS [dm3] 3R_14154006_INS [dm6]	T	TTTGT	3.589e^-4	0.995	UPSTREAM CG9722 DOWNSTREAM CG31533 EXON CR44215
3R	14457405	3R_14457405_SNP [dm3] 3R_18631683_SNP [dm6]	T	C	3.605e^-4	0.995	INTRON qin & 1 other
2R	12443075	2R_12443075_SNP [dm3] 2R_16555570_SNP [dm6]	A	T	3.629e^-4	0.995	INTRON Syn2
3L	11102567	3L_11102567_SNP [dm3] 3L_11109467_SNP [dm6]	A	G	3.647e^-4	0.995	SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
3R	23141242	3R_23141242_SNP [dm3] 3R_27315520_SNP [dm6]	C	T	3.648e^-4	0.995	INTRON CG3339	TF binding site mE1_TFBS_chinmo
3L	10090693	3L_10090693_SNP [dm3] 3L_10097593_SNP [dm6]	G	A	3.651e^-4	0.995	INTRON dpr6 & 1 other
X	5592398	X_5592398_SNP [dm3] X_5698365_SNP [dm6]	G	C	3.651e^-4	0.995	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17497736	2L_17497736_SNP [dm3] 2L_17497736_SNP [dm6]	C	A	3.654e^-4	0.995	UPSTREAM qua DOWNSTREAM CG15142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2485032	X_2485032_SNP [dm3] X_2590999_SNP [dm6]	G	A	3.658e^-4	0.995	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	2485251	X_2485251_SNP [dm3] X_2591218_SNP [dm6]	T	C	3.658e^-4	0.995	UPSTREAM egh INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2485252	X_2485252_SNP [dm3] X_2591219_SNP [dm6]	G	A	3.658e^-4	0.995	UPSTREAM egh INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2567831	3L_2567831_INS [dm3] 3L_2567831_INS [dm6]	G	GGGAATTCTCG...	3.663e^-4	0.995	INTRON msn	regulatory region REDfly_CRMs
X	2899565	X_2899565_SNP [dm3] X_3005532_SNP [dm6]	A	C	3.667e^-4	0.995	INTRON kirre
2R	17693825	2R_17693825_DEL [dm3] 2R_21806320_DEL [dm6]	TATTACT	T	3.671e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_kn
3R	17139715	3R_17139715_SNP [dm3] 3R_21313993_SNP [dm6]	C	T	3.685e^-4	0.995	EXON Hsromega	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21028901	3R_21028901_SNP [dm3] 3R_25203179_SNP [dm6]	C	A	3.692e^-4	0.995	INTRON CG13654 & 1 other
X	15527644	X_15527644_DEL [dm3] X_15633611_DEL [dm6]	CC	C	3.692e^-4	0.995	UPSTREAM sog INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22273225	X_22273225_SNP [dm3] X_22871389_SNP [dm6]	C	T	3.707e^-4	0.995	INTRON CG42346 & 1 other
2L	11483002	2L_11483002_SNP [dm3] 2L_11483002_SNP [dm6]	T	G	3.712e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9906228	3R_9906228_SNP [dm3] 3R_14080506_SNP [dm6]	C	A	3.713e^-4	0.995	INTRON foxo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20633024	X_20633024_SNP [dm3] X_20761997_SNP [dm6]	C	T	3.715e^-4	0.995	UTR_3_PRIME shakB
X	15286060	X_15286060_SNP [dm3] X_15392027_SNP [dm6]	T	G	3.717e^-4	0.995	INTRON Cngl
3R	15188291	3R_15188291_SNP [dm3] 3R_19362569_SNP [dm6]	A	G	3.721e^-4	0.995	INTERGENIC
3L	19287513	3L_19287513_SNP [dm3] 3L_19294413_SNP [dm6]	A	G	3.722e^-4	0.995	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8061552	3L_8061552_SNP [dm3] 3L_8068452_SNP [dm6]	T	C	3.726e^-4	0.995	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 INTRON Ect4
3L	5400464	3L_5400464_SNP [dm3] 3L_5407364_SNP [dm6]	G	A	3.730e^-4	0.995	INTERGENIC
2R	11510932	2R_11510932_INS [dm3] 2R_15623427_INS [dm6]	C	CCTC	3.731e^-4	0.995	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2L	8706891	2L_8706891_SNP [dm3] 2L_8706891_SNP [dm6]	C	T	3.736e^-4	0.995	SYNONYMOUS_CODING CG9314 INTRON Hnf4
2R	9410638	2R_9410638_SNP [dm3] 2R_13523133_SNP [dm6]	G	A	3.737e^-4	0.995	SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17140213	3R_17140213_DEL [dm3] 3R_21314491_DEL [dm6]	GGTAATCTGCACGT...	C	3.749e^-4	0.995	EXON Hsromega
2L	11678060	2L_11678060_SNP [dm3] 2L_11678060_SNP [dm6]	G	A	3.759e^-4	0.995	INTERGENIC
3L	8803185	3L_8803185_SNP [dm3] 3L_8810085_SNP [dm6]	A	T	3.760e^-4	0.995	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
X	2485023	X_2485023_SNP [dm3] X_2590990_SNP [dm6]	G	C	3.770e^-4	0.995	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1654471	2L_1654471_SNP [dm3] 2L_1654471_SNP [dm6]	C	A	3.771e^-4	0.995	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	19961535	3R_19961535_SNP [dm3] 3R_24135813_SNP [dm6]	C	T	3.777e^-4	0.995	SYNONYMOUS_CODING Sec10	TF binding site mE1_TFBS_sens
3L	12463342	3L_12463342_SNP [dm3] 3L_12470242_SNP [dm6]	T	A	3.779e^-4	0.995	UPSTREAM CG32102 INTERGENIC
3L	18021996	3L_18021996_DEL [dm3] 3L_18028896_DEL [dm6]	CC	C	3.798e^-4	0.995	INTRON Eip75B	TF binding site mE1_TFBS_HSA
3L	10706820	3L_10706820_SNP [dm3] 3L_10713720_SNP [dm6]	C	A	3.800e^-4	0.995	INTERGENIC
X	2485043	X_2485043_DEL [dm3] X_2591010_DEL [dm6]	TTGTTGCTATTTT...	T	3.800e^-4	0.995	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21237121	3R_21237121_SNP [dm3] 3R_25411399_SNP [dm6]	G	A	3.818e^-4	0.995	INTRON Fur1
2R	9414063	2R_9414063_SNP [dm3] 2R_13526558_SNP [dm6]	G	A	3.819e^-4	0.995	DOWNSTREAM CG13332 INTRON Vmat
2R	11143176	2R_11143176_SNP [dm3] 2R_15255671_SNP [dm6]	T	C	3.832e^-4	0.995	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25021274	3R_25021274_DEL [dm3] 3R_29195552_DEL [dm6]	AA	A	3.836e^-4	0.995	UPSTREAM CG14509 INTERGENIC
2L	8707191	2L_8707191_SNP [dm3] 2L_8707191_SNP [dm6]	G	A	3.844e^-4	0.995	SYNONYMOUS_CODING CG9314 INTRON Hnf4
2L	8707182	2L_8707182_SNP [dm3] 2L_8707182_SNP [dm6]	T	C	3.847e^-4	0.995	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3R	13691011	3R_13691011_SNP [dm3] 3R_17865289_SNP [dm6]	C	T	3.852e^-4	0.995	SYNONYMOUS_CODING tinc
3R	22808334	3R_22808334_SNP [dm3] 3R_26982612_SNP [dm6]	T	C	3.855e^-4	0.995	INTRON CG14253
3L	10905762	3L_10905762_SNP [dm3] 3L_10912662_SNP [dm6]	A	T	3.863e^-4	0.995	INTERGENIC
2R	15447928	2R_15447928_SNP [dm3] 2R_19560423_SNP [dm6]	T	C	3.865e^-4	0.995	INTRON sm
3L	7237154	3L_7237154_SNP [dm3] 3L_7244054_SNP [dm6]	A	T	3.870e^-4	0.995	UPSTREAM mei-P22 & 1 other DOWNSTREAM Neos INTERGENIC	insulator Insulator_Class_I.mE01
X	1611807	X_1611807_SNP [dm3] X_1717774_SNP [dm6]	T	C	3.873e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5328789	3R_5328789_SNP [dm3] 3R_9503067_SNP [dm6]	A	T	3.878e^-4	0.995	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14188492	3L_14188492_SNP [dm3] 3L_14195392_SNP [dm6]	G	C	3.881e^-4	0.995	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18823711	3R_18823711_SNP [dm3] 3R_22997989_SNP [dm6]	C	T	3.883e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
3R	17140210	3R_17140210_SNP [dm3] 3R_21314488_SNP [dm6]	C	T	3.885e^-4	0.995	EXON Hsromega
3R	20932518	3R_20932518_SNP [dm3] 3R_25106796_SNP [dm6]	C	T	3.893e^-4	0.995	SYNONYMOUS_CODING CG34027
3L	7089034	3L_7089034_SNP [dm3] 3L_7095934_SNP [dm6]	C	G	3.898e^-4	0.995	INTRON form3
2L	4231685	2L_4231685_SNP [dm3] 2L_4231685_SNP [dm6]	C	T	3.899e^-4	0.995	INTERGENIC
X	6426015	X_6426015_SNP [dm3] X_6531982_SNP [dm6]	C	T	3.907e^-4	0.995	SYNONYMOUS_CODING RpL7A UPSTREAM snoRNA:Or-CD10	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10759083	3L_10759083_SNP [dm3] 3L_10765983_SNP [dm6]	G	C	3.916e^-4	0.995	INTERGENIC
3R	27051111	3R_27051111_SNP [dm3] 3R_31225389_SNP [dm6]	A	T	3.916e^-4	0.995	START_GAINED CG12054 UTR_5_PRIME CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	4565778	X_4565778_SNP [dm3] X_4671745_SNP [dm6]	A	C	3.917e^-4	0.995	INTRON rap
3L	7236751	3L_7236751_INS [dm3] 3L_7243651_INS [dm6]	A	AC	3.920e^-4	0.995	UPSTREAM mei-P22 DOWNSTREAM Neos INTRON mRpL50	TF binding site mE1_TFBS_cad
2L	8234231	2L_8234231_SNP [dm3] 2L_8234231_SNP [dm6]	G	T	3.924e^-4	0.995	INTRON Pvr
3L	3361578	3L_3361578_SNP [dm3] 3L_3361578_SNP [dm6]	G	A	3.925e^-4	0.995	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	1630242	2L_1630242_SNP [dm3] 2L_1630242_SNP [dm6]	G	T	3.941e^-4	0.995	INTERGENIC
X	5460557	X_5460557_SNP [dm3] X_5566524_SNP [dm6]	A	T	3.941e^-4	0.995	INTERGENIC
2L	8191126	2L_8191126_SNP [dm3] 2L_8191126_SNP [dm6]	G	T	3.942e^-4	0.995	UTR_3_PRIME CG8475 UPSTREAM CG34134 DOWNSTREAM Piezo	TF binding site mE1_TFBS_cad
3L	6157972	3L_6157972_SNP [dm3] 3L_6164872_SNP [dm6]	G	A	3.953e^-4	0.995	DOWNSTREAM CG10289 & 1 other INTERGENIC
3L	19254118	3L_19254118_SNP [dm3] 3L_19261018_SNP [dm6]	T	A	3.954e^-4	0.995	UPSTREAM Bet1 & 1 other DOWNSTREAM CR45210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17657753	3R_17657753_INS [dm3] 3R_21832031_INS [dm6]	C	AG	3.957e^-4	0.995	UPSTREAM Gr93a INTERGENIC
2R	20150201	2R_20150201_SNP [dm3] 2R_24262678_SNP [dm6]	G	A	3.960e^-4	0.995	SYNONYMOUS_CODING CG3376	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	6970164	2L_6970164_SNP [dm3] 2L_6970164_SNP [dm6]	G	A	3.966e^-4	0.995	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16490079	3L_16490079_SNP [dm3] 3L_16496979_SNP [dm6]	C	T	3.978e^-4	0.995	UPSTREAM CG42514 & 1 other DOWNSTREAM CG33158 INTRON CG43373
2R	9525415	2R_9525415_SNP [dm3] 2R_13637910_SNP [dm6]	C	A	3.980e^-4	0.995	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	12089578	2R_12089578_SNP [dm3] 2R_16202073_SNP [dm6]	A	G	3.983e^-4	0.995	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17529021	2L_17529021_SNP [dm3] 2L_17529021_SNP [dm6]	T	C	4.005e^-4	0.995	UTR_5_PRIME CG15144 DOWNSTREAM CG15145
2R	17592741	2R_17592741_SNP [dm3] 2R_21705236_SNP [dm6]	C	A	4.011e^-4	0.995	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7231651	3L_7231651_SNP [dm3] 3L_7238551_SNP [dm6]	T	C	4.012e^-4	0.995	UTR_5_PRIME BHD UPSTREAM CG14829	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13592977	2L_13592977_SNP [dm3] 2L_13592977_SNP [dm6]	T	C	4.015e^-4	0.995	INTRON kuz
3R	13483506	3R_13483506_SNP [dm3] 3R_17657784_SNP [dm6]	A	T	4.029e^-4	0.995	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
X	20633460	X_20633460_SNP [dm3] X_20762433_SNP [dm6]	G	A	4.033e^-4	0.995	UTR_3_PRIME shakB
X	20633805	X_20633805_SNP [dm3] X_20762778_SNP [dm6]	T	G	4.033e^-4	0.995	UTR_3_PRIME shakB
X	20633816	X_20633816_INS [dm3] X_20762789_INS [dm6]	A	AGGCA	4.033e^-4	0.995	UTR_3_PRIME shakB
2L	2209554	2L_2209554_SNP [dm3] 2L_2209554_SNP [dm6]	A	G	4.034e^-4	0.995	UPSTREAM CG33124 DOWNSTREAM CG15385 INTERGENIC
2L	10605147	2L_10605147_SNP [dm3] 2L_10605147_SNP [dm6]	T	C	4.038e^-4	0.995	INTRON Trim9
2R	15129903	2R_15129903_SNP [dm3] 2R_19242398_SNP [dm6]	A	G	4.038e^-4	0.995	SPLICE_SITE_REGION cora INTRON cora
2R	16402822	2R_16402822_SNP [dm3] 2R_20515317_SNP [dm6]	A	C	4.054e^-4	0.995	INTERGENIC
3L	7092538	3L_7092538_SNP [dm3] 3L_7099438_SNP [dm6]	G	T	4.059e^-4	0.995	INTRON form3
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	4.072e^-4	0.995	DOWNSTREAM CG10289 & 1 other INTERGENIC
2R	17765644	2R_17765644_SNP [dm3] 2R_21878139_SNP [dm6]	T	A	4.073e^-4	0.995	INTRON Fili	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	20633919	X_20633919_SNP [dm3] X_20762892_SNP [dm6]	T	C	4.075e^-4	0.995	UTR_3_PRIME shakB
2R	15477244	2R_15477244_SNP [dm3] 2R_19589739_SNP [dm6]	T	A	4.090e^-4	0.995	INTRON sm
3R	3477863	3R_3477863_INS [dm3] 3R_7652141_INS [dm6]	A	ATTGCA	4.093e^-4	0.995	INTERGENIC
X	17674585	X_17674585_SNP [dm3] X_17780552_SNP [dm6]	G	A	4.103e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22807216	3R_22807216_SNP [dm3] 3R_26981494_SNP [dm6]	C	T	4.106e^-4	0.995	INTRON CG14253
3R	19715667	3R_19715667_SNP [dm3] 3R_23889945_SNP [dm6]	A	T	4.114e^-4	0.995	UTR_5_PRIME Pli DOWNSTREAM TfIIA-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19120478	2R_19120478_SNP [dm3] 2R_23232955_SNP [dm6]	T	C	4.114e^-4	0.995	NON_SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13481302	3R_13481302_SNP [dm3] 3R_17655580_SNP [dm6]	T	G	4.145e^-4	0.995	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
X	20632308	X_20632308_DEL [dm3] X_20761281_DEL [dm6]	TTATATTT	T	4.149e^-4	0.995	UTR_3_PRIME shakB UPSTREAM CR43838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	5962779	X_5962779_SNP [dm3] X_6068746_SNP [dm6]	C	T	4.155e^-4	0.995	SYNONYMOUS_CODING CG5928 DOWNSTREAM Tsp5D INTRON CG5928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11021007	X_11021007_SNP [dm3] X_11126974_SNP [dm6]	C	G	4.166e^-4	0.995	UTR_3_PRIME Gtp-bp DOWNSTREAM Rpt3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17765645	2R_17765645_DEL [dm3] 2R_21878140_DEL [dm6]	TG	T	4.176e^-4	0.995	INTRON Fili	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16500787	3R_16500787_SNP [dm3] 3R_20675065_SNP [dm6]	A	G	4.188e^-4	0.995	INTERGENIC
2R	9410179	2R_9410179_SNP [dm3] 2R_13522674_SNP [dm6]	A	G	4.188e^-4	0.995	SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7332916	2L_7332916_SNP [dm3] 2L_7332916_SNP [dm6]	T	G	4.219e^-4	0.995	UPSTREAM Wnt6 INTERGENIC
2R	14090141	2R_14090141_SNP [dm3] 2R_18202636_SNP [dm6]	A	C	4.227e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8668897	X_8668897_DEL [dm3] X_8774864_DEL [dm6]	AA	A	4.239e^-4	0.995	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11551981	2R_11551981_INS [dm3] 2R_15664476_INS [dm6]	T	TT	4.245e^-4	0.995	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	19317605	3R_19317605_SNP [dm3] 3R_23491883_SNP [dm6]	C	T	4.255e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20606825	3R_20606825_SNP [dm3] 3R_24781103_SNP [dm6]	A	G	4.262e^-4	0.995	INTRON CG42331	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	16703413	2L_16703413_SNP [dm3] 2L_16703413_SNP [dm6]	A	T	4.267e^-4	0.995	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1218864	3L_1218864_SNP [dm3] 3L_1218864_SNP [dm6]	G	A	4.267e^-4	0.995	UPSTREAM LysP INTRON mwh
3R	19720051	3R_19720051_SNP [dm3] 3R_23894329_SNP [dm6]	C	T	4.276e^-4	0.995	UTR_3_PRIME sba UPSTREAM tbrd-1
3R	12752995	3R_12752995_SNP [dm3] 3R_16927273_SNP [dm6]	A	T	4.290e^-4	0.995	UTR_3_PRIME Abd-B DOWNSTREAM Abd-B
2R	16325267	2R_16325267_INS [dm3] 2R_20437762_INS [dm6]	T	TTCCAT	4.301e^-4	0.995	INTRON CG12484
2R	7020263	2R_7020263_SNP [dm3] 2R_11132758_SNP [dm6]	C	T	4.302e^-4	0.995	INTERGENIC
2R	17409098	2R_17409098_SNP [dm3] 2R_21521593_SNP [dm6]	C	T	4.304e^-4	0.995	UPSTREAM Egfr INTRON CG30289	TF binding site BDTNP1_TFBS_dl
2R	6042897	2R_6042897_SNP [dm3] 2R_10155392_SNP [dm6]	C	T	4.304e^-4	0.995	UPSTREAM KCNQ DOWNSTREAM mlt INTRON KCNQ
2R	8435749	2R_8435749_INS [dm3] 2R_12548244_INS [dm6]	A	AGTTATCA	4.307e^-4	0.995	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3795280	3L_3795280_SNP [dm3] 3L_3795280_SNP [dm6]	T	A	4.310e^-4	0.995	UPSTREAM CG32264 INTRON CG32264
2R	9676870	2R_9676870_SNP [dm3] 2R_13789365_SNP [dm6]	T	C	4.317e^-4	0.995	INTERGENIC
2R	16325286	2R_16325286_INS [dm3] 2R_20437781_INS [dm6]	T	TTTAT	4.318e^-4	0.995	INTRON CG12484
3R	12247619	3R_12247619_SNP [dm3] 3R_16421897_SNP [dm6]	A	G	4.319e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs
X	17321131	X_17321131_DEL [dm3] X_17427098_DEL [dm6]	TGTCCAATTTATCAACAGCT...	C	4.324e^-4	0.995	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
3R	23251873	3R_23251873_DEL [dm3] 3R_27426151_DEL [dm6]	CCTTCGCC	C	4.327e^-4	0.995	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15286206	X_15286206_SNP [dm3] X_15392173_SNP [dm6]	C	T	4.338e^-4	0.995	INTRON Cngl
3R	13102877	3R_13102877_SNP [dm3] 3R_17277155_SNP [dm6]	T	A	4.358e^-4	0.995	INTERGENIC
2R	12587686	2R_12587686_SNP [dm3] 2R_16700181_SNP [dm6]	C	A	4.360e^-4	0.995	INTRON CG30463
2R	2584904	2R_2584904_SNP [dm3] 2R_6697399_SNP [dm6]	C	T	4.365e^-4	0.995	UPSTREAM Mob4 INTRON Rab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10802596	2R_10802596_SNP [dm3] 2R_14915091_SNP [dm6]	T	G	4.376e^-4	0.995	INTRON CG10249
2R	2735204	2R_2735204_DEL [dm3] 2R_6847699_DEL [dm6]	TT	T	4.378e^-4	0.995	INTERGENIC
3L	21294883	3L_21294883_DEL [dm3] 3L_21301783_DEL [dm6]	TTGCCTCAGCTCAGTTATTT...	T	4.380e^-4	0.995	UTR_3_PRIME CG11309 DOWNSTREAM CG11309 & 1 other INTRAGENIC CG11309 EXON CR45432
2L	10219945	2L_10219945_SNP [dm3] 2L_10219945_SNP [dm6]	A	C	4.398e^-4	0.995	UTR_5_PRIME Npc1a INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	23783357	3R_23783357_SNP [dm3] 3R_27957635_SNP [dm6]	C	G	4.405e^-4	0.995	DOWNSTREAM CG5527 INTRON CG4884 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2638998	2R_2638998_SNP [dm3] 2R_6751493_SNP [dm6]	C	T	4.414e^-4	0.995	UPSTREAM Eb1 INTRON Eb1
X	9432869	X_9432869_SNP [dm3] X_9538836_SNP [dm6]	T	C	4.417e^-4	0.995	INTRON CG32700
2R	11289879	2R_11289879_SNP [dm3] 2R_15402374_SNP [dm6]	C	T	4.423e^-4	0.995	UTR_5_PRIME CG43729
X	19501675	X_19501675_SNP [dm3] X_19607642_SNP [dm6]	A	T	4.426e^-4	0.995	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3R	17974019	3R_17974019_SNP [dm3] 3R_22148297_SNP [dm6]	A	G	4.429e^-4	0.995	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	12424039	3R_12424039_INS [dm3] 3R_16598317_INS [dm6]	G	GA	4.436e^-4	0.995	INTRON CG10345	TF binding site mE1_TFBS_chinmo
X	7514157	X_7514157_SNP [dm3] X_7620124_SNP [dm6]	A	T	4.443e^-4	0.995	INTRON ct	TF binding site BDTNP1_TFBS_dl
X	20819106	X_20819106_SNP [dm3] X_20948079_SNP [dm6]	A	T	4.452e^-4	0.995	INTERGENIC
2R	19352433	2R_19352433_SNP [dm3] 2R_23464910_SNP [dm6]	C	T	4.458e^-4	0.995	INTRON CG43795
3R	13483509	3R_13483509_SNP [dm3] 3R_17657787_SNP [dm6]	T	G	4.459e^-4	0.995	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
3L	6698058	3L_6698058_SNP [dm3] 3L_6704958_SNP [dm6]	A	T	4.465e^-4	0.995	UTR_5_PRIME CG8519
3L	4909852	3L_4909852_SNP [dm3] 3L_4909852_SNP [dm6]	A	G	4.468e^-4	0.995	UPSTREAM Rh50 INTERGENIC
2R	17830856	2R_17830856_SNP [dm3] 2R_21943351_SNP [dm6]	T	C	4.477e^-4	0.995	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo
3R	12247573	3R_12247573_INS [dm3] 3R_16421851_INS [dm6]	C	TAT	4.488e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	5429055	3L_5429055_SNP [dm3] 3L_5435955_SNP [dm6]	C	T	4.505e^-4	0.995	UPSTREAM CG34391 INTRON CG34391
2R	17329376	2R_17329376_SNP [dm3] 2R_21441871_SNP [dm6]	C	T	4.506e^-4	0.995	INTRON Sdc
3L	17983920	3L_17983920_SNP [dm3] 3L_17990820_SNP [dm6]	A	T	4.512e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14157047	2L_14157047_SNP [dm3] 2L_14157047_SNP [dm6]	C	T	4.520e^-4	0.995	SYNONYMOUS_CODING CG17341
2L	12131221	2L_12131221_SNP [dm3] 2L_12131221_SNP [dm6]	T	G	4.534e^-4	0.995	INTRON rho-6
3R	24624818	3R_24624818_SNP [dm3] 3R_28799096_SNP [dm6]	T	A	4.539e^-4	0.995	INTERGENIC
3L	3785251	3L_3785251_SNP [dm3] 3L_3785251_SNP [dm6]	A	T	4.540e^-4	0.995	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
3L	7226677	3L_7226677_SNP [dm3] 3L_7233577_SNP [dm6]	A	T	4.545e^-4	0.995	UPSTREAM CG14826 INTERGENIC
3R	20459360	3R_20459360_SNP [dm3] 3R_24633638_SNP [dm6]	C	T	4.549e^-4	0.995	SYNONYMOUS_CODING atl DOWNSTREAM CG43222	TF binding site mE1_TFBS_chinmo
2R	17846600	2R_17846600_SNP [dm3] 2R_21959095_SNP [dm6]	G	A	4.559e^-4	0.995	INTERGENIC
2R	7020251	2R_7020251_SNP [dm3] 2R_11132746_SNP [dm6]	A	T	4.562e^-4	0.995	INTERGENIC
2L	8363628	2L_8363628_DEL [dm3] 2L_8363628_DEL [dm6]	CAAGT	C	4.564e^-4	0.995	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
2R	17784786	2R_17784786_SNP [dm3] 2R_21897281_SNP [dm6]	G	A	4.568e^-4	0.995	INTRON Fili
2R	7523014	2R_7523014_SNP [dm3] 2R_11635509_SNP [dm6]	A	T	4.569e^-4	0.995	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14383308	3R_14383308_SNP [dm3] 3R_18557586_SNP [dm6]	A	T	4.577e^-4	0.995	INTERGENIC
3L	18011709	3L_18011709_SNP [dm3] 3L_18018609_SNP [dm6]	C	T	4.585e^-4	0.995	INTRON Eip75B
X	2455652	X_2455652_SNP [dm3] X_2561619_SNP [dm6]	A	G	4.597e^-4	0.995	INTRON Pdfr
3L	6894168	3L_6894168_SNP [dm3] 3L_6901068_SNP [dm6]	C	T	4.604e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_Kr
X	12778836	X_12778836_SNP [dm3] X_12884803_SNP [dm6]	C	T	4.608e^-4	0.995	INTRON Pde9
3L	2014381	3L_2014381_SNP [dm3] 3L_2014381_SNP [dm6]	A	C	4.614e^-4	0.995	INTERGENIC
3R	16500740	3R_16500740_SNP [dm3] 3R_20675018_SNP [dm6]	G	A	4.615e^-4	0.995	INTERGENIC
2R	18449991	2R_18449991_SNP [dm3] 2R_22562486_SNP [dm6]	C	G	4.617e^-4	0.995	UPSTREAM px DOWNSTREAM dnr1 INTRON CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18886570	3R_18886570_SNP [dm3] 3R_23060848_SNP [dm6]	A	G	4.633e^-4	0.995	SYNONYMOUS_CODING sav UPSTREAM Ublcp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	4.634e^-4	0.995	INTERGENIC
3L	2567893	3L_2567893_SNP [dm3] 3L_2567893_SNP [dm6]	A	G	4.636e^-4	0.995	INTRON msn	regulatory region REDfly_CRMs
2R	10842270	2R_10842270_SNP [dm3] 2R_14954765_SNP [dm6]	T	C	4.643e^-4	0.995	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9911165	2L_9911165_SNP [dm3] 2L_9911165_SNP [dm6]	A	G	4.647e^-4	0.995	INTRON Etl1	TF binding site mE1_TFBS_cad
3R	18572219	3R_18572219_SNP [dm3] 3R_22746497_SNP [dm6]	T	A	4.666e^-4	0.995	UTR_3_PRIME HP1c & 1 other UPSTREAM vret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2096255	2L_2096255_DEL [dm3] 2L_2096255_DEL [dm6]	TAAA	C	4.682e^-4	0.995	INTRON dpr3
2L	1907290	2L_1907290_SNP [dm3] 2L_1907290_SNP [dm6]	T	C	4.684e^-4	0.995	INTRON CG7337
3R	17140203	3R_17140203_SNP [dm3] 3R_21314481_SNP [dm6]	G	T	4.691e^-4	0.995	EXON Hsromega
2R	1996023	2R_1996023_SNP [dm3] 2R_6108518_SNP [dm6]	C	T	4.692e^-4	0.995	INTRON EcR
2R	18448852	2R_18448852_SNP [dm3] 2R_22561347_SNP [dm6]	G	A	4.698e^-4	0.995	UPSTREAM CG11362 INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	20883395	3L_20883395_SNP [dm3] 3L_20890295_SNP [dm6]	C	T	4.702e^-4	0.995	INTERGENIC
3R	7194625	3R_7194625_MNP [dm3] 3R_11368903_MNP [dm6]	CATT	GTAC	4.707e^-4	0.995	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	17657765	3R_17657765_SNP [dm3] 3R_21832043_SNP [dm6]	T	C	4.721e^-4	0.995	UPSTREAM Gr93a INTERGENIC
2R	6081981	2R_6081981_SNP [dm3] 2R_10194476_SNP [dm6]	A	T	4.722e^-4	0.995	INTERGENIC
2R	9774822	2R_9774822_SNP [dm3] 2R_13887317_SNP [dm6]	T	C	4.734e^-4	0.995	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	14644041	3R_14644041_SNP [dm3] 3R_18818319_SNP [dm6]	T	C	4.748e^-4	0.995	INTRON CG18208
3L	18323274	3L_18323274_SNP [dm3] 3L_18330174_SNP [dm6]	T	C	4.749e^-4	0.995	INTERGENIC
3R	13363758	3R_13363758_SNP [dm3] 3R_17538036_SNP [dm6]	G	A	4.767e^-4	0.995	SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4232574	2L_4232574_SNP [dm3] 2L_4232574_SNP [dm6]	T	C	4.768e^-4	0.995	INTERGENIC
3L	10750288	3L_10750288_SNP [dm3] 3L_10757188_SNP [dm6]	A	T	4.792e^-4	0.995	INTERGENIC
2L	7285521	2L_7285521_SNP [dm3] 2L_7285521_SNP [dm6]	A	T	4.793e^-4	0.995	INTERGENIC
X	12778857	X_12778857_SNP [dm3] X_12884824_SNP [dm6]	T	C	4.812e^-4	0.995	INTRON Pde9
2L	10604894	2L_10604894_SNP [dm3] 2L_10604894_SNP [dm6]	C	A	4.814e^-4	0.995	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
3L	10769631	3L_10769631_SNP [dm3] 3L_10776531_SNP [dm6]	C	A	4.825e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17657758	3R_17657758_SNP [dm3] 3R_21832036_SNP [dm6]	A	G	4.827e^-4	0.995	UPSTREAM Gr93a INTERGENIC
3R	27377254	3R_27377254_SNP [dm3] 3R_31551532_SNP [dm6]	C	T	4.838e^-4	0.995	INTRON nyo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25674523	3R_25674523_SNP [dm3] 3R_29848801_SNP [dm6]	A	T	4.842e^-4	0.995	INTRON Cad99C	TF binding site mE1_TFBS_cad
2L	5240879	2L_5240879_SNP [dm3] 2L_5240879_SNP [dm6]	A	G	4.846e^-4	0.995	DOWNSTREAM tRNA:CR31914 & 1 other INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19017906	2R_19017906_SNP [dm3] 2R_23130383_SNP [dm6]	C	T	4.859e^-4	0.995	UPSTREAM CG3215 INTERGENIC
3R	12703349	3R_12703349_SNP [dm3] 3R_16877627_SNP [dm6]	A	C	4.865e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20517013	X_20517013_SNP [dm3] X_20645986_SNP [dm6]	A	C	4.873e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17327677	2R_17327677_SNP [dm3] 2R_21440172_SNP [dm6]	G	A	4.874e^-4	0.995	INTRON Sdc
2R	15861818	2R_15861818_SNP [dm3] 2R_19974313_SNP [dm6]	T	G	4.882e^-4	0.995	INTERGENIC
3R	22807253	3R_22807253_SNP [dm3] 3R_26981531_SNP [dm6]	A	T	4.886e^-4	0.995	SPLICE_SITE_ACCEPTOR CG14253 START_GAINED CG14253 UTR_5_PRIME CG14253 INTRON CG14253
3R	12703346	3R_12703346_SNP [dm3] 3R_16877624_SNP [dm6]	T	C	4.892e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22548465	3R_22548465_SNP [dm3] 3R_26722743_SNP [dm6]	T	C	4.893e^-4	0.995	SYNONYMOUS_CODING CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2250847	3L_2250847_SNP [dm3] 3L_2250847_SNP [dm6]	A	G	4.896e^-4	0.995	SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
2R	12591570	2R_12591570_SNP [dm3] 2R_16704065_SNP [dm6]	C	G	4.897e^-4	0.995	INTRON CG30463
X	16072010	X_16072010_SNP [dm3] X_16177977_SNP [dm6]	G	A	4.899e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	5334580	X_5334580_SNP [dm3] X_5440547_SNP [dm6]	G	T	4.905e^-4	0.995	INTERGENIC
2L	14094957	2L_14094957_SNP [dm3] 2L_14094957_SNP [dm6]	G	T	4.905e^-4	0.995	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	1119421	2L_1119421_SNP [dm3] 2L_1119421_SNP [dm6]	A	T	4.907e^-4	0.995	UPSTREAM Pino INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
2L	7282992	2L_7282992_SNP [dm3] 2L_7282992_SNP [dm6]	G	A	4.908e^-4	0.995	INTERGENIC
3R	24631301	3R_24631301_SNP [dm3] 3R_28805579_SNP [dm6]	A	T	4.919e^-4	0.995	INTERGENIC
3L	20619739	3L_20619739_SNP [dm3] 3L_20626639_SNP [dm6]	T	A	4.923e^-4	0.995	EXON CR44683 & 1 other
3R	19619371	3R_19619371_SNP [dm3] 3R_23793649_SNP [dm6]	C	T	4.925e^-4	0.995	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4228724	2L_4228724_SNP [dm3] 2L_4228724_SNP [dm6]	C	A	4.931e^-4	0.995	UPSTREAM CR44608 DOWNSTREAM RpL40 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14886063	2R_14886063_SNP [dm3] 2R_18998558_SNP [dm6]	T	A	4.933e^-4	0.995	SYNONYMOUS_CODING tn INTRON tn
3L	3427896	3L_3427896_SNP [dm3] 3L_3427896_SNP [dm6]	G	T	4.939e^-4	0.995	DOWNSTREAM eIF5B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6696463	3L_6696463_SNP [dm3] 3L_6703363_SNP [dm6]	T	A	4.946e^-4	0.995	UTR_5_PRIME SP1173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1019183	3L_1019183_SNP [dm3] 3L_1019183_SNP [dm6]	G	C	4.948e^-4	0.995	UTR_5_PRIME trio INTRON trio	TF binding site mE1_TFBS_inv
3R	19522972	3R_19522972_SNP [dm3] 3R_23697250_SNP [dm6]	C	T	4.952e^-4	0.995	SYNONYMOUS_CODING prt	TF binding site mE1_TFBS_cad
2R	10915038	2R_10915038_SNP [dm3] 2R_15027533_SNP [dm6]	C	T	4.956e^-4	0.995	INTRON hbs	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	2453011	2L_2453011_SNP [dm3] 2L_2453011_SNP [dm6]	A	G	4.962e^-4	0.995	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18971700	2R_18971700_SNP [dm3] 2R_23084177_SNP [dm6]	A	G	4.962e^-4	0.995	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	21984611	3R_21984611_SNP [dm3] 3R_26158889_SNP [dm6]	C	T	4.976e^-4	0.995	INTERGENIC
3R	12702890	3R_12702890_SNP [dm3] 3R_16877168_SNP [dm6]	A	T	4.989e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8572863	X_8572863_SNP [dm3] X_8678830_SNP [dm6]	T	G	4.996e^-4	0.995	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19253929	3L_19253929_SNP [dm3] 3L_19260829_SNP [dm6]	T	A	4.997e^-4	0.995	UPSTREAM Bet1 & 1 other EXON CR45210	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9025190	3L_9025190_SNP [dm3] 3L_9032090_SNP [dm6]	C	A	4.999e^-4	0.995	INTERGENIC
3R	17408581	3R_17408581_SNP [dm3] 3R_21582859_SNP [dm6]	C	T	5.000e^-4	0.995	INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25021192	3R_25021192_SNP [dm3] 3R_29195470_SNP [dm6]	T	A	5.002e^-4	0.995	UPSTREAM CG14509 INTERGENIC
X	18019316	X_18019316_SNP [dm3] X_18125283_SNP [dm6]	C	G	5.004e^-4	0.995	NON_SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
3R	10971554	3R_10971554_SNP [dm3] 3R_15145832_SNP [dm6]	G	C	5.012e^-4	0.995	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4420017	X_4420017_SNP [dm3] X_4525984_SNP [dm6]	T	C	5.022e^-4	0.995	INTRON CR32773
2L	9534660	2L_9534660_SNP [dm3] 2L_9534660_SNP [dm6]	C	A	5.026e^-4	0.995	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
3L	7711322	3L_7711322_SNP [dm3] 3L_7718222_SNP [dm6]	G	C	5.026e^-4	0.995	UTR_5_PRIME Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
3L	3385163	3L_3385163_SNP [dm3] 3L_3385163_SNP [dm6]	C	T	5.043e^-4	0.995	INTERGENIC
3R	13111156	3R_13111156_SNP [dm3] 3R_17285434_SNP [dm6]	A	G	5.069e^-4	0.995	DOWNSTREAM CG31418 & 2 others INTERGENIC
3L	21331722	3L_21331722_SNP [dm3] 3L_21338622_SNP [dm6]	G	C	5.079e^-4	0.995	NON_SYNONYMOUS_CODING CG7324 DOWNSTREAM CG7338
3L	6565201	3L_6565201_SNP [dm3] 3L_6572101_SNP [dm6]	A	G	5.084e^-4	0.995	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14302608	3R_14302608_SNP [dm3] 3R_18476886_SNP [dm6]	G	C	5.085e^-4	0.995	INTRON fru
2L	4613587	2L_4613587_SNP [dm3] 2L_4613587_SNP [dm6]	T	C	5.087e^-4	0.995	INTRON dp	TF binding site BDTNP1_TFBS_dl
2L	5486464	2L_5486464_SNP [dm3] 2L_5486464_SNP [dm6]	A	C	5.096e^-4	0.995	UPSTREAM CR45287 INTERGENIC
3R	20467847	3R_20467847_SNP [dm3] 3R_24642125_SNP [dm6]	A	C	5.104e^-4	0.995	INTRON puf	TF binding site mE1_TFBS_cad
3R	19912957	3R_19912957_SNP [dm3] 3R_24087235_SNP [dm6]	C	T	5.133e^-4	0.995	INTRON 4EHP
2R	17788213	2R_17788213_SNP [dm3] 2R_21900708_SNP [dm6]	A	G	5.135e^-4	0.995	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18016046	3L_18016046_SNP [dm3] 3L_18022946_SNP [dm6]	C	T	5.160e^-4	0.995	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	1878966	2L_1878966_SNP [dm3] 2L_1878966_SNP [dm6]	C	T	5.161e^-4	0.995	INTRON CG31663
3R	18040833	3R_18040833_SNP [dm3] 3R_22215111_SNP [dm6]	G	C	5.176e^-4	0.995	INTRON SKIP & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3384714	3L_3384714_SNP [dm3] 3L_3384714_SNP [dm6]	G	A	5.181e^-4	0.995	INTERGENIC
2L	4232950	2L_4232950_SNP [dm3] 2L_4232950_SNP [dm6]	A	G	5.182e^-4	0.995	INTERGENIC
2L	9866386	2L_9866386_SNP [dm3] 2L_9866386_SNP [dm6]	A	T	5.184e^-4	0.995	INTRON nAChRalpha6
2L	17209562	2L_17209562_SNP [dm3] 2L_17209562_SNP [dm6]	G	A	5.195e^-4	0.995	INTRON beat-IIIc
2R	8197105	2R_8197105_SNP [dm3] 2R_12309600_SNP [dm6]	C	T	5.205e^-4	0.995	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2683190	2R_2683190_SNP [dm3] 2R_6795685_SNP [dm6]	A	T	5.205e^-4	0.995	INTRON Epac
3R	23270368	3R_23270368_SNP [dm3] 3R_27444646_SNP [dm6]	G	A	5.208e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3540273	3R_3540273_SNP [dm3] 3R_7714551_SNP [dm6]	G	A	5.210e^-4	0.995	INTERGENIC
2L	16333623	2L_16333623_SNP [dm3] 2L_16333623_SNP [dm6]	G	A	5.213e^-4	0.995	SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7935390	3L_7935390_SNP [dm3] 3L_7942290_SNP [dm6]	T	C	5.219e^-4	0.995	INTERGENIC
2L	4614223	2L_4614223_SNP [dm3] 2L_4614223_SNP [dm6]	C	A	5.222e^-4	0.995	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18823584	3R_18823584_INS [dm3] 3R_22997862_INS [dm6]	T	TTT	5.226e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
3L	10089073	3L_10089073_SNP [dm3] 3L_10095973_SNP [dm6]	G	T	5.226e^-4	0.995	SYNONYMOUS_CODING CG42825 INTRON dpr6
2R	15944827	2R_15944827_SNP [dm3] 2R_20057322_SNP [dm6]	G	A	5.231e^-4	0.995	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1907224	2L_1907224_SNP [dm3] 2L_1907224_SNP [dm6]	G	T	5.262e^-4	0.995	INTRON CG7337
3L	5024089	3L_5024089_SNP [dm3] 3L_5024089_SNP [dm6]	T	C	5.263e^-4	0.995	INTRON Con
2R	9368191	2R_9368191_SNP [dm3] 2R_13480686_SNP [dm6]	C	T	5.271e^-4	0.995	INTRON arr
X	4860274	X_4860274_SNP [dm3] X_4966241_SNP [dm6]	T	C	5.272e^-4	0.995	INTRON CR44833	regulatory region REDfly_CRMs
3R	15014212	3R_15014212_INS [dm3] 3R_19188490_INS [dm6]	G	GCCTTCAGCTG...	5.274e^-4	0.995	INTRON CG31475
3L	18036765	3L_18036765_SNP [dm3] 3L_18043665_SNP [dm6]	T	G	5.277e^-4	0.995	UTR_3_PRIME CG42393 INTRON Eip75B
3R	12703387	3R_12703387_SNP [dm3] 3R_16877665_SNP [dm6]	G	C	5.282e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11293705	2R_11293705_SNP [dm3] 2R_15406200_SNP [dm6]	T	C	5.284e^-4	0.995	INTRON CG43729
3R	13483507	3R_13483507_SNP [dm3] 3R_17657785_SNP [dm6]	C	T	5.315e^-4	0.995	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
3L	2567870	3L_2567870_SNP [dm3] 3L_2567870_SNP [dm6]	T	A	5.319e^-4	0.995	INTRON msn	regulatory region REDfly_CRMs
2R	9508772	2R_9508772_SNP [dm3] 2R_13621267_SNP [dm6]	A	G	5.320e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8272324	3L_8272324_SNP [dm3] 3L_8279224_SNP [dm6]	C	T	5.323e^-4	0.995	INTRON Dscam4
3L	7252677	3L_7252677_SNP [dm3] 3L_7259577_SNP [dm6]	C	T	5.327e^-4	0.995	INTRON CG14830
2L	1744416	2L_1744416_SNP [dm3] 2L_1744416_SNP [dm6]	C	A	5.331e^-4	0.995	INTRON CG17646
3L	6379017	3L_6379017_SNP [dm3] 3L_6385917_SNP [dm6]	C	A	5.336e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9186347	2L_9186347_SNP [dm3] 2L_9186347_SNP [dm6]	C	T	5.346e^-4	0.995	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6072552	3L_6072552_SNP [dm3] 3L_6079452_SNP [dm6]	A	G	5.347e^-4	0.995	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
3L	9249883	3L_9249883_SNP [dm3] 3L_9256783_SNP [dm6]	A	G	5.364e^-4	0.995	INTRON GluRIB
2R	4265145	2R_4265145_INS [dm3] 2R_8377640_INS [dm6]	C	CC	5.367e^-4	0.995	INTRON pdm3	TF binding site mE1_TFBS_inv
X	10080999	X_10080999_INS [dm3] X_10186966_INS [dm6]	A	ATA	5.381e^-4	0.995	INTRON CR44894 & 1 other
2L	1654735	2L_1654735_SNP [dm3] 2L_1654735_SNP [dm6]	A	G	5.414e^-4	0.995	INTRON chinmo
3R	12683271	3R_12683271_DEL [dm3] 3R_16857549_DEL [dm6]	TTTT	T	5.416e^-4	0.995	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19985170	X_19985170_SNP [dm3] X_20091137_SNP [dm6]	A	C	5.425e^-4	0.995	DOWNSTREAM fd19B & 1 other INTERGENIC
2R	19780967	2R_19780967_SNP [dm3] 2R_23893444_SNP [dm6]	A	T	5.428e^-4	0.995	DOWNSTREAM DNA-ligI INTRON Upf3
3R	18485437	3R_18485437_SNP [dm3] 3R_22659715_SNP [dm6]	A	T	5.429e^-4	0.995	INTRON CG45058
2R	9545201	2R_9545201_SNP [dm3] 2R_13657696_SNP [dm6]	T	A	5.434e^-4	0.995	INTRON fas
3R	18823649	3R_18823649_SNP [dm3] 3R_22997927_SNP [dm6]	G	T	5.439e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
X	11500932	X_11500932_SNP [dm3] X_11606899_SNP [dm6]	A	G	5.441e^-4	0.995	SYNONYMOUS_CODING CG2247 DOWNSTREAM rho-4	TF binding site BDTNP1_TFBS_sna
2L	3168595	2L_3168595_SNP [dm3] 2L_3168595_SNP [dm6]	T	C	5.463e^-4	0.995	UTR_3_PRIME Hydr2 UPSTREAM tRNA:S7:23Eb
2L	13592855	2L_13592855_INS [dm3] 2L_13592855_INS [dm6]	T	TATTT	5.480e^-4	0.995	INTRON kuz
2L	13592874	2L_13592874_SNP [dm3] 2L_13592874_SNP [dm6]	C	T	5.480e^-4	0.995	INTRON kuz
2L	13592882	2L_13592882_INS [dm3] 2L_13592882_INS [dm6]	A	AGAACCATAAAAA...	5.480e^-4	0.995	INTRON kuz
2L	13593075	2L_13593075_SNP [dm3] 2L_13593075_SNP [dm6]	C	G	5.480e^-4	0.995	INTRON kuz
3L	2014386	3L_2014386_SNP [dm3] 3L_2014386_SNP [dm6]	T	C	5.483e^-4	0.995	INTERGENIC
2L	7282966	2L_7282966_SNP [dm3] 2L_7282966_SNP [dm6]	T	C	5.485e^-4	0.995	INTERGENIC
2L	1585266	2L_1585266_SNP [dm3] 2L_1585266_SNP [dm6]	C	T	5.498e^-4	0.995	SYNONYMOUS_CODING CG10869 INTRON haf
X	17346949	X_17346949_SNP [dm3] X_17452916_SNP [dm6]	T	C	5.505e^-4	0.995	UPSTREAM CG8568 INTERGENIC
2L	2460550	2L_2460550_SNP [dm3] 2L_2460550_SNP [dm6]	T	G	5.513e^-4	0.995	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	22263369	3R_22263369_SNP [dm3] 3R_26437647_SNP [dm6]	T	G	5.517e^-4	0.995	INTERGENIC
2R	10882624	2R_10882624_SNP [dm3] 2R_14995119_SNP [dm6]	A	G	5.526e^-4	0.995	EXON CR43830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16486762	2R_16486762_SNP [dm3] 2R_20599257_SNP [dm6]	A	G	5.527e^-4	0.995	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6526051	3R_6526051_SNP [dm3] 3R_10700329_SNP [dm6]	G	A	5.533e^-4	0.995	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25216584	3R_25216584_SNP [dm3] 3R_29390862_SNP [dm6]	A	C	5.539e^-4	0.995	INTRON Ptp99A
3L	3384758	3L_3384758_SNP [dm3] 3L_3384758_SNP [dm6]	T	A	5.542e^-4	0.995	INTERGENIC
2L	16333573	2L_16333573_SNP [dm3] 2L_16333573_SNP [dm6]	C	T	5.550e^-4	0.995	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6794600	2L_6794600_SNP [dm3] 2L_6794600_SNP [dm6]	A	C	5.554e^-4	0.995	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18797339	3R_18797339_SNP [dm3] 3R_22971617_SNP [dm6]	C	G	5.558e^-4	0.995	INTERGENIC
2R	15213957	2R_15213957_SNP [dm3] 2R_19326452_SNP [dm6]	C	T	5.564e^-4	0.995	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo
3R	18823691	3R_18823691_SNP [dm3] 3R_22997969_SNP [dm6]	T	A	5.581e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
3L	1281467	3L_1281467_SNP [dm3] 3L_1281467_SNP [dm6]	C	G	5.590e^-4	0.995	INTRON CG32333
3R	22807306	3R_22807306_SNP [dm3] 3R_26981584_SNP [dm6]	A	C	5.590e^-4	0.995	UTR_5_PRIME CG14253 INTRON CG14253
3L	21330528	3L_21330528_INS [dm3] 3L_21337428_INS [dm6]	C	CATC	5.592e^-4	0.995	DOWNSTREAM CG7324 INTRON CG7338	TF binding site mE1_TFBS_cad
X	10150281	X_10150281_SNP [dm3] X_10256248_SNP [dm6]	G	A	5.593e^-4	0.995	START_GAINED Hk UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
2L	16185141	2L_16185141_SNP [dm3] 2L_16185141_SNP [dm6]	T	A	5.606e^-4	0.995	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20606719	3R_20606719_SNP [dm3] 3R_24780997_SNP [dm6]	G	C	5.607e^-4	0.995	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	18823722	3R_18823722_SNP [dm3] 3R_22998000_SNP [dm6]	A	G	5.614e^-4	0.995	DOWNSTREAM CR43454 INTRON Nha2
X	17346930	X_17346930_SNP [dm3] X_17452897_SNP [dm6]	T	C	5.628e^-4	0.995	UPSTREAM CG8568 INTERGENIC
X	18827557	X_18827557_SNP [dm3] X_18933524_SNP [dm6]	G	A	5.629e^-4	0.995	INTRON CG43759
X	20633276	X_20633276_SNP [dm3] X_20762249_SNP [dm6]	T	C	5.630e^-4	0.995	UTR_3_PRIME shakB
2R	15094205	2R_15094205_SNP [dm3] 2R_19206700_SNP [dm6]	T	C	5.633e^-4	0.995	INTRON hppy
X	2669154	X_2669154_INS [dm3] X_2775121_INS [dm6]	A	AGA	5.634e^-4	0.995	INTRON kirre
2L	4181016	2L_4181016_SNP [dm3] 2L_4181016_SNP [dm6]	A	G	5.640e^-4	0.995	INTERGENIC
X	5546737	X_5546737_SNP [dm3] X_5652704_SNP [dm6]	C	A	5.645e^-4	0.995	UTR_3_PRIME CG42265
3R	26015991	3R_26015991_DEL [dm3] 3R_30190269_DEL [dm6]	TATGGATATGG...	T	5.658e^-4	0.995	INTRON CG9747	TF binding site mE1_TFBS_chinmo
2R	10983218	2R_10983218_SNP [dm3] 2R_15095713_SNP [dm6]	G	A	5.658e^-4	0.995	INTERGENIC
2L	5239748	2L_5239748_SNP [dm3] 2L_5239748_SNP [dm6]	C	T	5.660e^-4	0.995	INTRON tkv	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	17013871	2R_17013871_SNP [dm3] 2R_21126366_SNP [dm6]	C	A	5.665e^-4	0.995	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11203292	2R_11203292_SNP [dm3] 2R_15315787_SNP [dm6]	C	T	5.672e^-4	0.995	NON_SYNONYMOUS_CODING mus210
3L	10080116	3L_10080116_SNP [dm3] 3L_10087016_SNP [dm6]	A	T	5.681e^-4	0.995	UTR_3_PRIME CG14160 INTRON dpr6
2R	19242020	2R_19242020_SNP [dm3] 2R_23354497_SNP [dm6]	A	G	5.691e^-4	0.995	START_GAINED CG30409 UTR_5_PRIME CG30409 UPSTREAM Rpi INTRON CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	4675771	2L_4675771_DEL [dm3] 2L_4675771_DEL [dm6]	GAGCGTAG	G	5.698e^-4	0.995	INTERGENIC
3R	20348551	3R_20348551_SNP [dm3] 3R_24522829_SNP [dm6]	G	A	5.701e^-4	0.995	SYNONYMOUS_CODING CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site mE1_TFBS_chinmo
3L	10769677	3L_10769677_SNP [dm3] 3L_10776577_SNP [dm6]	A	G	5.701e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16501949	3R_16501949_SNP [dm3] 3R_20676227_SNP [dm6]	G	C	5.726e^-4	0.995	UTR_3_PRIME CG4000 UPSTREAM CR45024
3L	12292765	3L_12292765_SNP [dm3] 3L_12299665_SNP [dm6]	C	A	5.726e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5244948	3L_5244948_SNP [dm3] 3L_5251848_SNP [dm6]	T	C	5.730e^-4	0.995	INTRON shep
3R	13110440	3R_13110440_SNP [dm3] 3R_17284718_SNP [dm6]	T	G	5.739e^-4	0.995	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
2R	2638682	2R_2638682_SNP [dm3] 2R_6751177_SNP [dm6]	A	C	5.749e^-4	0.995	UPSTREAM Eb1 INTRON Eb1	TF binding site BDTNP1_TFBS_z
3R	17657812	3R_17657812_SNP [dm3] 3R_21832090_SNP [dm6]	A	T	5.762e^-4	0.995	UPSTREAM Gr93a INTERGENIC
3R	17657815	3R_17657815_SNP [dm3] 3R_21832093_SNP [dm6]	G	C	5.762e^-4	0.995	UPSTREAM Gr93a INTERGENIC
2R	10683946	2R_10683946_SNP [dm3] 2R_14796441_SNP [dm6]	T	C	5.767e^-4	0.995	INTRON kn
3R	25593145	3R_25593145_SNP [dm3] 3R_29767423_SNP [dm6]	A	C	5.781e^-4	0.995	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	10938106	X_10938106_INS [dm3] X_11044073_INS [dm6]	A	AAA	5.793e^-4	0.995	UPSTREAM CG11160 INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	5.808e^-4	0.995	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3R	13363764	3R_13363764_SNP [dm3] 3R_17538042_SNP [dm6]	A	G	5.808e^-4	0.995	SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17787278	2R_17787278_SNP [dm3] 2R_21899773_SNP [dm6]	A	G	5.834e^-4	0.995	INTRON Fili
X	12967428	X_12967428_SNP [dm3] X_13073395_SNP [dm6]	C	T	5.844e^-4	0.995	INTRON rad
2L	10605194	2L_10605194_SNP [dm3] 2L_10605194_SNP [dm6]	A	T	5.853e^-4	0.995	INTRON Trim9
2R	8578277	2R_8578277_SNP [dm3] 2R_12690772_SNP [dm6]	C	T	5.854e^-4	0.995	SYNONYMOUS_CODING Obp49a UPSTREAM CG30053 DOWNSTREAM CG8768
X	6759456	X_6759456_SNP [dm3] X_6865423_SNP [dm6]	G	A	5.858e^-4	0.995	INTRON CG43736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20871124	3L_20871124_SNP [dm3] 3L_20878024_SNP [dm6]	G	A	5.862e^-4	0.995	INTRON CG32432
2L	9817479	2L_9817479_SNP [dm3] 2L_9817479_SNP [dm6]	G	A	5.867e^-4	0.995	INTRON nAChRalpha6
2L	11709221	2L_11709221_SNP [dm3] 2L_11709221_SNP [dm6]	T	C	5.870e^-4	0.995	INTERGENIC
X	15577834	X_15577834_SNP [dm3] X_15683801_SNP [dm6]	A	G	5.872e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2123174	3L_2123174_SNP [dm3] 3L_2123174_SNP [dm6]	G	T	5.880e^-4	0.995	INTRON zormin
3L	2123175	3L_2123175_SNP [dm3] 3L_2123175_SNP [dm6]	T	A	5.880e^-4	0.995	INTRON zormin
3L	2123195	3L_2123195_SNP [dm3] 3L_2123195_SNP [dm6]	A	T	5.880e^-4	0.995	INTRON zormin
X	13628111	X_13628111_SNP [dm3] X_13734078_SNP [dm6]	T	A	5.884e^-4	0.995	INTRON g	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16501921	3R_16501921_SNP [dm3] 3R_20676199_SNP [dm6]	T	C	5.889e^-4	0.995	UPSTREAM CR45024 DOWNSTREAM CG4000 INTERGENIC
2L	1474446	2L_1474446_SNP [dm3] 2L_1474446_SNP [dm6]	G	C	5.890e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22878802	3L_22878802_SNP [dm3] 3L_22885702_SNP [dm6]	A	C	5.910e^-4	0.995	INTRON slif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17363115	2R_17363115_SNP [dm3] 2R_21475610_SNP [dm6]	T	C	5.910e^-4	0.995	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	1812285	3R_1812285_SNP [dm3] 3R_5986563_SNP [dm6]	T	G	5.913e^-4	0.995	INTERGENIC
2L	2453010	2L_2453010_SNP [dm3] 2L_2453010_SNP [dm6]	A	G	5.916e^-4	0.995	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	16680899	X_16680899_SNP [dm3] X_16786866_SNP [dm6]	A	T	5.919e^-4	0.995	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	22219312	3R_22219312_SNP [dm3] 3R_26393590_SNP [dm6]	A	C	5.922e^-4	0.995	INTERGENIC
2L	9731135	2L_9731135_SNP [dm3] 2L_9731135_SNP [dm6]	A	T	5.924e^-4	0.995	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	11102668	3L_11102668_SNP [dm3] 3L_11109568_SNP [dm6]	A	G	5.931e^-4	0.995	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11020999	X_11020999_SNP [dm3] X_11126966_SNP [dm6]	A	G	5.938e^-4	0.995	UTR_3_PRIME Gtp-bp DOWNSTREAM Rpt3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4565777	X_4565777_SNP [dm3] X_4671744_SNP [dm6]	A	G	5.944e^-4	0.995	INTRON rap
X	3164041	X_3164041_SNP [dm3] X_3270008_SNP [dm6]	C	T	5.948e^-4	0.995	INTRON dnc
3R	19619386	3R_19619386_SNP [dm3] 3R_23793664_SNP [dm6]	T	C	5.958e^-4	0.995	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10179587	2L_10179587_SNP [dm3] 2L_10179587_SNP [dm6]	T	C	5.964e^-4	0.995	INTRON CG44153	TF binding site BDTNP1_TFBS_twi
2L	3752751	2L_3752751_DEL [dm3] 2L_3752751_DEL [dm6]	TA	C	5.966e^-4	0.995	UTR_3_PRIME CG10019
X	20632945	X_20632945_SNP [dm3] X_20761918_SNP [dm6]	G	A	5.970e^-4	0.995	UTR_3_PRIME shakB UPSTREAM CR43838
X	4565807	X_4565807_SNP [dm3] X_4671774_SNP [dm6]	G	A	5.971e^-4	0.995	INTRON rap
2R	7367446	2R_7367446_SNP [dm3] 2R_11479941_SNP [dm6]	T	A	5.980e^-4	0.995	INTRON inv
X	20633501	X_20633501_SNP [dm3] X_20762474_SNP [dm6]	A	G	5.988e^-4	0.995	UTR_3_PRIME shakB
3R	19295351	3R_19295351_SNP [dm3] 3R_23469629_SNP [dm6]	T	C	5.996e^-4	0.995	INTRON CG4374
2R	11855240	2R_11855240_SNP [dm3] 2R_15967735_SNP [dm6]	A	G	6.001e^-4	0.995	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	20598136	3R_20598136_SNP [dm3] 3R_24772414_SNP [dm6]	A	T	6.007e^-4	0.995	INTRON CG42331
2R	13437513	2R_13437513_SNP [dm3] 2R_17550008_SNP [dm6]	C	A	6.007e^-4	0.995	NON_SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	22384831	3L_22384831_SNP [dm3] 3L_22391731_SNP [dm6]	A	C	6.038e^-4	0.995	INTRON Ten-m
X	4565984	X_4565984_SNP [dm3] X_4671951_SNP [dm6]	C	T	6.040e^-4	0.995	INTRON rap
3R	23784378	3R_23784378_SNP [dm3] 3R_27958656_SNP [dm6]	A	T	6.045e^-4	0.995	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17346981	X_17346981_SNP [dm3] X_17452948_SNP [dm6]	T	A	6.061e^-4	0.995	UPSTREAM CG8568 INTERGENIC
2R	19355136	2R_19355136_SNP [dm3] 2R_23467613_SNP [dm6]	G	C	6.061e^-4	0.995	INTRON CG43795
2L	3848170	2L_3848170_SNP [dm3] 2L_3848170_SNP [dm6]	A	G	6.072e^-4	0.995	INTERGENIC
3L	2268031	3L_2268031_SNP [dm3] 3L_2268031_SNP [dm6]	T	A	6.080e^-4	0.995	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
2R	17765328	2R_17765328_SNP [dm3] 2R_21877823_SNP [dm6]	C	T	6.100e^-4	0.995	INTRON Fili	TF binding site mE1_TFBS_cnc
2R	11404445	2R_11404445_SNP [dm3] 2R_15516940_SNP [dm6]	G	A	6.106e^-4	0.995	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
2R	12588868	2R_12588868_SNP [dm3] 2R_16701363_SNP [dm6]	C	T	6.121e^-4	0.995	INTRON CG30463
X	5189221	X_5189221_SNP [dm3] X_5295188_SNP [dm6]	G	A	6.122e^-4	0.995	UPSTREAM CG42749 INTERGENIC
3L	2568002	3L_2568002_INS [dm3] 3L_2568002_INS [dm6]	GT	ACATA	6.148e^-4	0.995	INTRON msn	regulatory region REDfly_CRMs
3R	17659206	3R_17659206_SNP [dm3] 3R_21833484_SNP [dm6]	C	T	6.164e^-4	0.995	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	20818786	X_20818786_SNP [dm3] X_20947759_SNP [dm6]	G	T	6.166e^-4	0.995	INTERGENIC
2L	5240876	2L_5240876_SNP [dm3] 2L_5240876_SNP [dm6]	A	T	6.177e^-4	0.995	DOWNSTREAM tRNA:CR31914 & 1 other INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17995866	3L_17995866_SNP [dm3] 3L_18002766_SNP [dm6]	T	A	6.182e^-4	0.995	DOWNSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	12571054	2R_12571054_SNP [dm3] 2R_16683549_SNP [dm6]	T	A	6.185e^-4	0.995	INTRON CG30463
2R	19122013	2R_19122013_DEL [dm3] 2R_23234490_DEL [dm6]	TT	T	6.186e^-4	0.995	DOWNSTREAM CG3092 INTERGENIC
X	17346980	X_17346980_SNP [dm3] X_17452947_SNP [dm6]	A	T	6.193e^-4	0.995	UPSTREAM CG8568 INTERGENIC
X	17346988	X_17346988_SNP [dm3] X_17452955_SNP [dm6]	T	A	6.193e^-4	0.995	UPSTREAM CG8568 INTERGENIC
3L	906419	3L_906419_SNP [dm3] 3L_906419_SNP [dm6]	T	A	6.194e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12977042	3R_12977042_SNP [dm3] 3R_17151320_SNP [dm6]	C	T	6.202e^-4	0.995	SYNONYMOUS_CODING CG5285 UPSTREAM CG5292 DOWNSTREAM Det	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_ttk
2R	9314436	2R_9314436_SNP [dm3] 2R_13426931_SNP [dm6]	A	T	6.203e^-4	0.995	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
2L	8327053	2L_8327053_SNP [dm3] 2L_8327053_SNP [dm6]	T	C	6.213e^-4	0.995	UPSTREAM CG14275 INTERGENIC
3R	5328790	3R_5328790_SNP [dm3] 3R_9503068_SNP [dm6]	C	A	6.215e^-4	0.995	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9295216	3L_9295216_DEL [dm3] 3L_9302116_DEL [dm6]	TT	T	6.220e^-4	0.995	INTERGENIC
3L	10608183	3L_10608183_SNP [dm3] 3L_10615083_SNP [dm6]	A	C	6.222e^-4	0.995	INTERGENIC
3L	12444917	3L_12444917_SNP [dm3] 3L_12451817_SNP [dm6]	G	A	6.227e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5066876	2R_5066876_SNP [dm3] 2R_9179371_SNP [dm6]	G	T	6.229e^-4	0.995	UPSTREAM ltd INTRON ltd	TF binding site mE1_TFBS_cad
2L	2258011	2L_2258011_SNP [dm3] 2L_2258011_SNP [dm6]	A	G	6.233e^-4	0.995	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4599398	3L_4599398_SNP [dm3] 3L_4599398_SNP [dm6]	T	A	6.239e^-4	0.995	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22175300	3R_22175300_SNP [dm3] 3R_26349578_SNP [dm6]	A	G	6.240e^-4	0.995	INTRON CG33970
2R	7020220	2R_7020220_DEL [dm3] 2R_11132715_DEL [dm6]	GATAACGTGG	G	6.242e^-4	0.995	INTERGENIC
X	21229007	X_21229007_SNP [dm3] X_21357980_SNP [dm6]	T	C	6.243e^-4	0.995	UPSTREAM Sep1 DOWNSTREAM sol INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13958274	3L_13958274_SNP [dm3] 3L_13965174_SNP [dm6]	C	G	6.247e^-4	0.995	UPSTREAM ssp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	17644320	2L_17644320_SNP [dm3] 2L_17644320_SNP [dm6]	T	A	6.247e^-4	0.995	DOWNSTREAM CR45699 INTERGENIC
2R	10216966	2R_10216966_SNP [dm3] 2R_14329461_SNP [dm6]	T	A	6.253e^-4	0.995	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2R	6042883	2R_6042883_SNP [dm3] 2R_10155378_SNP [dm6]	A	C	6.255e^-4	0.995	UPSTREAM KCNQ DOWNSTREAM mlt INTRON KCNQ
2L	7336836	2L_7336836_SNP [dm3] 2L_7336836_SNP [dm6]	G	C	6.256e^-4	0.995	INTRON Wnt6
3R	23784080	3R_23784080_SNP [dm3] 3R_27958358_SNP [dm6]	T	G	6.276e^-4	0.995	NON_SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13836658	X_13836658_SNP [dm3] X_13942625_SNP [dm6]	G	C	6.279e^-4	0.995	INTRON mamo
2L	14841373	2L_14841373_SNP [dm3] 2L_14841373_SNP [dm6]	G	C	6.279e^-4	0.995	UPSTREAM CG42682 DOWNSTREAM CR43805 EXON CR43805
3R	19715885	3R_19715885_SNP [dm3] 3R_23890163_SNP [dm6]	C	T	6.283e^-4	0.995	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	6759934	X_6759934_DEL [dm3] X_6865901_DEL [dm6]	TTCT	T	6.288e^-4	0.995	INTRON CG43736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17917689	3R_17917689_SNP [dm3] 3R_22091967_SNP [dm6]	T	G	6.299e^-4	0.995	INTRON CG5778
3L	14560918	3L_14560918_SNP [dm3] 3L_14567818_SNP [dm6]	C	T	6.309e^-4	0.995	NON_SYNONYMOUS_CODING CG42758
X	16680808	X_16680808_SNP [dm3] X_16786775_SNP [dm6]	T	A	6.315e^-4	0.995	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18516686	2R_18516686_DEL [dm3] 2R_22629181_DEL [dm6]	ATTA	A	6.338e^-4	0.995	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	9314435	2R_9314435_SNP [dm3] 2R_13426930_SNP [dm6]	C	T	6.338e^-4	0.995	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
3L	9004962	3L_9004962_SNP [dm3] 3L_9011862_SNP [dm6]	G	A	6.349e^-4	0.995	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	25021086	3R_25021086_SNP [dm3] 3R_29195364_SNP [dm6]	A	G	6.365e^-4	0.995	UPSTREAM CG14509 INTERGENIC
X	6667652	X_6667652_SNP [dm3] X_6773619_SNP [dm6]	G	A	6.365e^-4	0.995	DOWNSTREAM COQ7 INTRON shf
X	20631322	X_20631322_SNP [dm3] X_20760295_SNP [dm6]	A	G	6.370e^-4	0.995	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	15944795	2R_15944795_SNP [dm3] 2R_20057290_SNP [dm6]	C	T	6.380e^-4	0.995	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25032207	3R_25032207_DEL [dm3] 3R_29206485_DEL [dm6]	CACCTTTAGGCATGC...	GTTTATAAAGT...	6.381e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20633806	X_20633806_SNP [dm3] X_20762779_SNP [dm6]	C	T	6.387e^-4	0.995	UTR_3_PRIME shakB
3L	6894169	3L_6894169_SNP [dm3] 3L_6901069_SNP [dm6]	G	T	6.388e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14457257	3R_14457257_SNP [dm3] 3R_18631535_SNP [dm6]	T	A	6.392e^-4	0.995	INTRON qin & 1 other
X	12778382	X_12778382_SNP [dm3] X_12884349_SNP [dm6]	A	T	6.399e^-4	0.995	INTRON Pde9
2R	16486430	2R_16486430_SNP [dm3] 2R_20598925_SNP [dm6]	G	A	6.433e^-4	0.995	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20949280	X_20949280_SNP [dm3] X_21078253_SNP [dm6]	A	G	6.441e^-4	0.995	UTR_3_PRIME bves INTRON bves
2R	14830700	2R_14830700_SNP [dm3] 2R_18943195_SNP [dm6]	T	C	6.446e^-4	0.995	INTRON sano

By genomic position
Variant impact
Gene name

PC3_Nutri_Score_High phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results