DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.712e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.0467

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.7478	0.0974
In_3R_Mo	6.1098	0.0471

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2332 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13641000	2L_13641000_INS [dm3] 2L_13641000_INS [dm6]	T	TT	6.021e^-7	0.51	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25795787	3R_25795787_SNP [dm3] 3R_29970065_SNP [dm6]	C	T	7.436e^-7	0.51	UPSTREAM TkR99D INTERGENIC
3L	2644168	3L_2644168_SNP [dm3] 3L_2644168_SNP [dm6]	A	T	9.740e^-7	0.51	UPSTREAM CG14949 INTERGENIC
3L	20595178	3L_20595178_SNP [dm3] 3L_20602078_SNP [dm6]	G	A	1.317e^-6	0.51	INTRON knrl
3R	25772771	3R_25772771_SNP [dm3] 3R_29947049_SNP [dm6]	G	C	1.531e^-6	0.51	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19016562	X_19016562_SNP [dm3] X_19122529_SNP [dm6]	A	C	2.264e^-6	0.51	INTERGENIC
3L	20595131	3L_20595131_SNP [dm3] 3L_20602031_SNP [dm6]	T	C	2.864e^-6	0.51	INTRON knrl
3R	13891519	3R_13891519_SNP [dm3] 3R_18065797_SNP [dm6]	A	C	2.954e^-6	0.51	INTERGENIC
2R	16931871	2R_16931871_SNP [dm3] 2R_21044366_SNP [dm6]	T	C	3.173e^-6	0.51	INTERGENIC
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	3.406e^-6	0.51	INTERGENIC
2R	13076808	2R_13076808_SNP [dm3] 2R_17189303_SNP [dm6]	C	A	4.246e^-6	0.51	UPSTREAM CR45323 & 1 other INTERGENIC
3R	25075753	3R_25075753_SNP [dm3] 3R_29250031_SNP [dm6]	G	C	4.429e^-6	0.51	INTRON SP1029
2R	13076733	2R_13076733_SNP [dm3] 2R_17189228_SNP [dm6]	G	A	4.490e^-6	0.51	UPSTREAM CR45323 & 1 other INTERGENIC
3R	26896010	3R_26896010_SNP [dm3] 3R_31070288_SNP [dm6]	C	A	4.937e^-6	0.51	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	13076873	2R_13076873_SNP [dm3] 2R_17189368_SNP [dm6]	T	A	5.689e^-6	0.51	UPSTREAM CR44389 EXON CR45323
2R	546420	2R_546420_SNP [dm3] 2R_4658915_SNP [dm6]	G	C	5.701e^-6	0.51	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14697761	3R_14697761_INS [dm3] 3R_18872039_INS [dm6]	A	ATTT	6.438e^-6	0.51	INTERGENIC
2R	13076805	2R_13076805_SNP [dm3] 2R_17189300_SNP [dm6]	T	C	6.453e^-6	0.51	UPSTREAM CR45323 & 1 other INTERGENIC
3L	5419757	3L_5419757_SNP [dm3] 3L_5426657_SNP [dm6]	G	C	6.484e^-6	0.51	INTRON CG34391	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10244988	3L_10244988_SNP [dm3] 3L_10251888_SNP [dm6]	G	T	6.501e^-6	0.51	INTERGENIC
3R	25075808	3R_25075808_SNP [dm3] 3R_29250086_SNP [dm6]	C	A	6.603e^-6	0.51	INTRON SP1029
3L	16420906	3L_16420906_SNP [dm3] 3L_16427806_SNP [dm6]	T	G	6.889e^-6	0.51	INTRON CG33158 & 1 other
3R	25076129	3R_25076129_DEL [dm3] 3R_29250407_DEL [dm6]	CAC	C	6.976e^-6	0.51	UTR_5_PRIME SP1029	TF binding site BDTNP1_TFBS_twi
2L	5126457	2L_5126457_SNP [dm3] 2L_5126457_SNP [dm6]	G	A	7.184e^-6	0.51	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5126487	2L_5126487_SNP [dm3] 2L_5126487_SNP [dm6]	G	A	7.184e^-6	0.51	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5128209	2L_5128209_SNP [dm3] 2L_5128209_SNP [dm6]	G	A	7.184e^-6	0.51	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	6372625	3L_6372625_SNP [dm3] 3L_6379525_SNP [dm6]	A	G	7.727e^-6	0.51	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25772483	3R_25772483_SNP [dm3] 3R_29946761_SNP [dm6]	G	A	7.943e^-6	0.51	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3L	3949365	3L_3949365_SNP [dm3] 3L_3949365_SNP [dm6]	T	C	8.086e^-6	0.51	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
2R	16113704	2R_16113704_SNP [dm3] 2R_20226199_SNP [dm6]	A	T	8.159e^-6	0.51	INTERGENIC
2R	12665744	2R_12665744_INS [dm3] 2R_16778239_INS [dm6]	T	TT	8.474e^-6	0.512	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12665572	2R_12665572_SNP [dm3] 2R_16778067_SNP [dm6]	G	A	8.849e^-6	0.518	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2618297	2R_2618297_DEL [dm3] 2R_6730792_DEL [dm6]	TCCTTGTCGT	T	9.197e^-6	0.522	CODON_DELETION l_2_01289 INTRON l_2_01289
3L	3951520	3L_3951520_SNP [dm3] 3L_3951520_SNP [dm6]	G	A	1.025e^-5	0.565	INTRON CG14984
3L	10473404	3L_10473404_SNP [dm3] 3L_10480304_SNP [dm6]	C	G	1.132e^-5	0.594	INTERGENIC
3R	25075810	3R_25075810_SNP [dm3] 3R_29250088_SNP [dm6]	A	T	1.141e^-5	0.594	INTRON SP1029
3R	9614053	3R_9614053_SNP [dm3] 3R_13788331_SNP [dm6]	A	G	1.289e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13076850	2R_13076850_SNP [dm3] 2R_17189345_SNP [dm6]	G	A	1.298e^-5	0.64	UPSTREAM CR44389 EXON CR45323
3R	21787943	3R_21787943_SNP [dm3] 3R_25962221_SNP [dm6]	C	G	1.368e^-5	0.656	DOWNSTREAM CG14540 INTRON boss
2R	16363069	2R_16363069_SNP [dm3] 2R_20475564_SNP [dm6]	G	C	1.399e^-5	0.656	INTRON CG12484
3L	3686501	3L_3686501_SNP [dm3] 3L_3686501_SNP [dm6]	C	T	1.538e^-5	0.679	INTERGENIC
3R	9401582	3R_9401582_SNP [dm3] 3R_13575860_SNP [dm6]	G	C	1.582e^-5	0.679	DOWNSTREAM CR43848 INTERGENIC
X	10406496	X_10406496_SNP [dm3] X_10512463_SNP [dm6]	A	G	1.666e^-5	0.679	INTRON spri
X	19173631	X_19173631_SNP [dm3] X_19279598_SNP [dm6]	T	C	1.696e^-5	0.679	SYNONYMOUS_CODING CG8028	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27471265	3R_27471265_SNP [dm3] 3R_31645543_SNP [dm6]	G	A	1.753e^-5	0.679	INTRON kek6
3R	27471266	3R_27471266_SNP [dm3] 3R_31645544_SNP [dm6]	G	A	1.753e^-5	0.679	INTRON kek6
X	13905845	X_13905845_SNP [dm3] X_14011812_SNP [dm6]	T	C	1.764e^-5	0.679	INTERGENIC
3L	1137713	3L_1137713_SNP [dm3] 3L_1137713_SNP [dm6]	C	T	1.880e^-5	0.679	INTERGENIC
3L	17498401	3L_17498401_SNP [dm3] 3L_17505301_SNP [dm6]	T	A	1.901e^-5	0.679	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16363105	2R_16363105_DEL [dm3] 2R_20475600_DEL [dm6]	AGTACTATGCAATCAAATT...	A	1.961e^-5	0.679	INTRON CG12484
2R	12665578	2R_12665578_SNP [dm3] 2R_16778073_SNP [dm6]	C	T	1.982e^-5	0.679	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19506109	2R_19506109_SNP [dm3] 2R_23618586_SNP [dm6]	T	C	2.005e^-5	0.679	INTERGENIC
2L	8168762	2L_8168762_SNP [dm3] 2L_8168762_SNP [dm6]	G	A	2.045e^-5	0.679	INTRON Piezo
2R	13076696	2R_13076696_INS [dm3] 2R_17189191_INS [dm6]	T	TGGTTTTTGAGTTAT...	2.093e^-5	0.679	UPSTREAM CR45323 & 1 other INTERGENIC
2L	13487337	2L_13487337_SNP [dm3] 2L_13487337_SNP [dm6]	C	A	2.098e^-5	0.679	INTRON CG42784
3L	21601049	3L_21601049_SNP [dm3] 3L_21607949_SNP [dm6]	C	T	2.128e^-5	0.679	UPSTREAM TfAP-2 INTRON TfAP-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13776786	3R_13776786_INS [dm3] 3R_17951064_INS [dm6]	A	ACATA	2.165e^-5	0.679	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25773348	3R_25773348_SNP [dm3] 3R_29947626_SNP [dm6]	T	C	2.224e^-5	0.679	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16363033	2R_16363033_SNP [dm3] 2R_20475528_SNP [dm6]	C	G	2.243e^-5	0.679	INTRON CG12484
3L	3797201	3L_3797201_SNP [dm3] 3L_3797201_SNP [dm6]	A	C	2.280e^-5	0.679	INTRON CG32264
3L	3794031	3L_3794031_SNP [dm3] 3L_3794031_SNP [dm6]	C	T	2.287e^-5	0.679	INTRON CG32264
3R	9614049	3R_9614049_SNP [dm3] 3R_13788327_SNP [dm6]	A	T	2.316e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19450560	3L_19450560_INS [dm3] 3L_19457460_INS [dm6]	T	TA	2.332e^-5	0.679	INTERGENIC	transposable element FlyBase
3R	15277948	3R_15277948_SNP [dm3] 3R_19452226_SNP [dm6]	C	A	2.338e^-5	0.679	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	10118006	3R_10118006_SNP [dm3] 3R_14292284_SNP [dm6]	G	A	2.361e^-5	0.679	INTRON CG12207
3R	25795346	3R_25795346_SNP [dm3] 3R_29969624_SNP [dm6]	T	C	2.447e^-5	0.679	UPSTREAM TkR99D INTERGENIC
3R	25758548	3R_25758548_SNP [dm3] 3R_29932826_SNP [dm6]	C	T	2.483e^-5	0.679	UPSTREAM CG42557 & 1 other INTRON Cog7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4860909	3L_4860909_SNP [dm3] 3L_4860909_SNP [dm6]	C	G	2.499e^-5	0.679	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	5050624	2L_5050624_SNP [dm3] 2L_5050624_SNP [dm6]	G	T	2.537e^-5	0.679	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2R	12665763	2R_12665763_SNP [dm3] 2R_16778258_SNP [dm6]	C	T	2.567e^-5	0.679	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8753777	X_8753777_SNP [dm3] X_8859744_SNP [dm6]	A	G	2.605e^-5	0.679	INTRON CG12075
3R	9401573	3R_9401573_SNP [dm3] 3R_13575851_SNP [dm6]	A	G	2.610e^-5	0.679	DOWNSTREAM CR43848 INTERGENIC
2L	20795215	2L_20795215_SNP [dm3] 2L_20795215_SNP [dm6]	A	G	2.645e^-5	0.679	INTRON vari EXON CR44146
3R	9774844	3R_9774844_SNP [dm3] 3R_13949122_SNP [dm6]	G	A	2.692e^-5	0.68	UTR_3_PRIME CG31517	TF binding site BDTNP1_TFBS_twi
3L	1235258	3L_1235258_DEL [dm3] 3L_1235258_DEL [dm6]	TAAATTGCTTAAAATA...	T	2.722e^-5	0.68	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
3R	13312753	3R_13312753_SNP [dm3] 3R_17487031_SNP [dm6]	C	T	2.829e^-5	0.682	INTRON Dscam3
2L	11621318	2L_11621318_SNP [dm3] 2L_11621318_SNP [dm6]	G	T	2.835e^-5	0.682	UTR_5_PRIME kek2
3R	20727509	3R_20727509_SNP [dm3] 3R_24901787_SNP [dm6]	T	C	2.916e^-5	0.682	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5693504	3L_5693504_SNP [dm3] 3L_5700404_SNP [dm6]	A	G	2.917e^-5	0.682	INTRON sif
2R	546070	2R_546070_SNP [dm3] 2R_4658565_SNP [dm6]	A	C	3.044e^-5	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17448452	3L_17448452_SNP [dm3] 3L_17455352_SNP [dm6]	G	T	3.049e^-5	0.682	UTR_3_PRIME CG18265 DOWNSTREAM CG18265
2R	16363028	2R_16363028_DEL [dm3] 2R_20475523_DEL [dm6]	GGC	G	3.054e^-5	0.682	INTRON CG12484
3R	15277868	3R_15277868_SNP [dm3] 3R_19452146_SNP [dm6]	C	A	3.137e^-5	0.682	INTRON CG31221
3L	2158587	3L_2158587_SNP [dm3] 3L_2158587_SNP [dm6]	C	T	3.173e^-5	0.682	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12570080	2R_12570080_SNP [dm3] 2R_16682575_SNP [dm6]	A	G	3.198e^-5	0.682	INTRON CG30463
3R	25795369	3R_25795369_SNP [dm3] 3R_29969647_SNP [dm6]	T	A	3.203e^-5	0.682	UPSTREAM TkR99D INTERGENIC
2R	12667091	2R_12667091_SNP [dm3] 2R_16779586_SNP [dm6]	C	T	3.205e^-5	0.682	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad
3R	25075366	3R_25075366_SNP [dm3] 3R_29249644_SNP [dm6]	A	G	3.264e^-5	0.682	UPSTREAM SP1029 INTRON SP1029
2R	13076703	2R_13076703_SNP [dm3] 2R_17189198_SNP [dm6]	T	C	3.269e^-5	0.682	UPSTREAM CR45323 & 1 other INTERGENIC
X	16612574	X_16612574_DEL [dm3] X_16718541_DEL [dm6]	ATATA	A	3.283e^-5	0.682	INTRON CG34325
3L	1815466	3L_1815466_SNP [dm3] 3L_1815466_SNP [dm6]	A	G	3.312e^-5	0.682	INTRON GV1
3L	6741800	3L_6741800_SNP [dm3] 3L_6748700_SNP [dm6]	C	T	3.351e^-5	0.683	SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6914028	3L_6914028_SNP [dm3] 3L_6920928_SNP [dm6]	G	C	3.426e^-5	0.685	INTERGENIC
2R	16363037	2R_16363037_INS [dm3] 2R_20475532_INS [dm6]	C	CCTGTAC	3.446e^-5	0.685	INTRON CG12484
3R	13615950	3R_13615950_SNP [dm3] 3R_17790228_SNP [dm6]	C	A	3.515e^-5	0.685	INTRON CG43102
3L	3719765	3L_3719765_SNP [dm3] 3L_3719765_SNP [dm6]	G	A	3.516e^-5	0.685	INTRON CG32264
X	9503226	X_9503226_SNP [dm3] X_9609193_SNP [dm6]	T	G	3.733e^-5	0.685	UTR_5_PRIME CG42797 UPSTREAM Aats-lys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19171658	3R_19171658_DEL [dm3] 3R_23345936_DEL [dm6]	GT	G	3.737e^-5	0.685	UTR_5_PRIME pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15202883	2R_15202883_SNP [dm3] 2R_19315378_SNP [dm6]	A	G	3.765e^-5	0.685	INTRON Rgk1
2L	4333914	2L_4333914_SNP [dm3] 2L_4333914_SNP [dm6]	C	T	3.798e^-5	0.685	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9614055	3R_9614055_SNP [dm3] 3R_13788333_SNP [dm6]	A	C	3.807e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17498584	3L_17498584_SNP [dm3] 3L_17505484_SNP [dm6]	C	T	3.818e^-5	0.685	INTRON Oatp74D	TF binding site BDTNP1_TFBS_twi
3L	11658461	3L_11658461_DEL [dm3] 3L_11665361_DEL [dm6]	TAT	T	3.819e^-5	0.685	INTRON CG32085
3R	9614046	3R_9614046_SNP [dm3] 3R_13788324_SNP [dm6]	T	C	3.834e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5899964	X_5899964_SNP [dm3] X_6005931_SNP [dm6]	G	A	3.838e^-5	0.685	DOWNSTREAM CR44498 INTERGENIC
3R	12081681	3R_12081681_SNP [dm3] 3R_16255959_SNP [dm6]	G	A	3.896e^-5	0.689	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8163881	2L_8163881_SNP [dm3] 2L_8163881_SNP [dm6]	C	T	4.015e^-5	0.7	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1284151	3L_1284151_SNP [dm3] 3L_1284151_SNP [dm6]	G	A	4.066e^-5	0.7	INTRON CG32333
2R	10560116	2R_10560116_SNP [dm3] 2R_14672611_SNP [dm6]	T	C	4.068e^-5	0.7	DOWNSTREAM CG12866 INTRON mspo
3L	5686074	3L_5686074_SNP [dm3] 3L_5692974_SNP [dm6]	T	G	4.210e^-5	0.7	INTRON sif
3L	5687431	3L_5687431_SNP [dm3] 3L_5694331_SNP [dm6]	G	A	4.210e^-5	0.7	INTRON sif
2R	16095904	2R_16095904_SNP [dm3] 2R_20208399_SNP [dm6]	T	A	4.269e^-5	0.7	INTERGENIC
3R	13953337	3R_13953337_SNP [dm3] 3R_18127615_SNP [dm6]	C	T	4.323e^-5	0.7	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20778770	X_20778770_SNP [dm3] X_20907743_SNP [dm6]	A	C	4.389e^-5	0.7	INTRON shakB
3R	25773398	3R_25773398_SNP [dm3] 3R_29947676_SNP [dm6]	C	T	4.439e^-5	0.7	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3R	13918385	3R_13918385_DEL [dm3] 3R_18092663_DEL [dm6]	AATCCAGCCA	A	4.454e^-5	0.7	INTRON sr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25771343	3R_25771343_SNP [dm3] 3R_29945621_SNP [dm6]	A	T	4.473e^-5	0.7	SYNONYMOUS_CODING CG15523
3L	1248941	3L_1248941_SNP [dm3] 3L_1248941_SNP [dm6]	G	A	4.516e^-5	0.7	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9592103	3R_9592103_SNP [dm3] 3R_13766381_SNP [dm6]	C	T	4.534e^-5	0.7	NON_SYNONYMOUS_CODING CG9312
3L	4860914	3L_4860914_SNP [dm3] 3L_4860914_SNP [dm6]	A	G	4.548e^-5	0.7	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	1254879	3L_1254879_SNP [dm3] 3L_1254879_SNP [dm6]	C	T	4.548e^-5	0.7	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9724220	3R_9724220_DEL [dm3] 3R_13898498_DEL [dm6]	GA	G	4.564e^-5	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	9418982	X_9418982_SNP [dm3] X_9524949_SNP [dm6]	A	G	4.607e^-5	0.7	INTRON CG32700
3R	6444358	3R_6444358_SNP [dm3] 3R_10618636_SNP [dm6]	T	A	4.645e^-5	0.7	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	14085839	X_14085839_SNP [dm3] X_14191806_SNP [dm6]	C	A	4.684e^-5	0.7	INTRON CG13403
3L	1254360	3L_1254360_SNP [dm3] 3L_1254360_SNP [dm6]	C	T	4.748e^-5	0.7	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	2473463	3R_2473463_SNP [dm3] 3R_6647741_SNP [dm6]	G	T	4.775e^-5	0.7	NON_SYNONYMOUS_CODING Taf1 INTRON Taf1
3L	16143759	3L_16143759_SNP [dm3] 3L_16150659_SNP [dm6]	G	A	4.845e^-5	0.7	INTRON CG5151	TF binding site mE1_TFBS_cad
3R	25075534	3R_25075534_SNP [dm3] 3R_29249812_SNP [dm6]	G	A	4.849e^-5	0.7	UPSTREAM SP1029 INTRON SP1029
3R	13776759	3R_13776759_SNP [dm3] 3R_17951037_SNP [dm6]	C	G	4.885e^-5	0.7	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16816623	3L_16816623_SNP [dm3] 3L_16823523_SNP [dm6]	A	G	4.895e^-5	0.7	INTRON CG13024
2L	22921581	2L_22921581_SNP [dm3] 2L_23028849_SNP [dm6]	T	C	5.017e^-5	0.702	INTERGENIC
3R	25075603	3R_25075603_SNP [dm3] 3R_29249881_SNP [dm6]	A	C	5.117e^-5	0.702	UPSTREAM SP1029 INTRON SP1029
2L	1350677	2L_1350677_SNP [dm3] 2L_1350677_SNP [dm6]	A	T	5.165e^-5	0.702	INTERGENIC
2L	7121949	2L_7121949_SNP [dm3] 2L_7121949_SNP [dm6]	T	C	5.235e^-5	0.702	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7717124	2L_7717124_SNP [dm3] 2L_7717124_SNP [dm6]	C	T	5.263e^-5	0.702	SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
3L	6750592	3L_6750592_SNP [dm3] 3L_6757492_SNP [dm6]	G	A	5.354e^-5	0.702	UPSTREAM CG10103 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22085432	3R_22085432_DEL [dm3] 3R_26259710_DEL [dm6]	CAC	C	5.364e^-5	0.702	UPSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13680796	2L_13680796_SNP [dm3] 2L_13680796_SNP [dm6]	T	C	5.427e^-5	0.702	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3R	25874711	3R_25874711_SNP [dm3] 3R_30048989_SNP [dm6]	G	A	5.471e^-5	0.702	SYNONYMOUS_CODING CG15528 UPSTREAM CR44046 DOWNSTREAM CG7943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	13905636	X_13905636_SNP [dm3] X_14011603_SNP [dm6]	G	A	5.564e^-5	0.702	INTERGENIC
3R	6249050	3R_6249050_SNP [dm3] 3R_10423328_SNP [dm6]	C	A	5.567e^-5	0.702	INTERGENIC
2R	13897288	2R_13897288_SNP [dm3] 2R_18009783_SNP [dm6]	A	G	5.613e^-5	0.702	INTERGENIC
2R	13897267	2R_13897267_SNP [dm3] 2R_18009762_SNP [dm6]	T	C	5.652e^-5	0.702	INTERGENIC
2L	8174723	2L_8174723_SNP [dm3] 2L_8174723_SNP [dm6]	G	A	5.661e^-5	0.702	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15354846	2L_15354846_SNP [dm3] 2L_15354846_SNP [dm6]	C	T	5.666e^-5	0.702	INTERGENIC
3L	5489919	3L_5489919_SNP [dm3] 3L_5496819_SNP [dm6]	G	C	5.716e^-5	0.702	DOWNSTREAM blanks INTERGENIC
3R	25075831	3R_25075831_INS [dm3] 3R_29250109_INS [dm6]	G	GCAC	5.733e^-5	0.702	INTRON SP1029
3R	13615919	3R_13615919_SNP [dm3] 3R_17790197_SNP [dm6]	C	A	5.816e^-5	0.702	INTRON CG43102
2R	15005393	2R_15005393_SNP [dm3] 2R_19117888_SNP [dm6]	C	T	5.820e^-5	0.702	INTRON 5-HT1A
X	5390306	X_5390306_SNP [dm3] X_5496273_SNP [dm6]	C	T	5.884e^-5	0.702	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	9329496	3L_9329496_SNP [dm3] 3L_9336396_SNP [dm6]	A	T	5.995e^-5	0.702	INTRON PGRP-LA
3L	11382586	3L_11382586_DEL [dm3] 3L_11389486_DEL [dm6]	GAACAG	G	5.997e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16807914	3L_16807914_SNP [dm3] 3L_16814814_SNP [dm6]	C	T	6.065e^-5	0.702	INTRON nudC & 1 other
3L	3795146	3L_3795146_SNP [dm3] 3L_3795146_SNP [dm6]	C	A	6.100e^-5	0.702	UPSTREAM CG32264 INTRON CG32264
2R	13993001	2R_13993001_SNP [dm3] 2R_18105496_SNP [dm6]	C	G	6.106e^-5	0.702	INTRON CG5756
3L	4860930	3L_4860930_SNP [dm3] 3L_4860930_SNP [dm6]	A	G	6.110e^-5	0.702	UPSTREAM CG17150 & 1 other INTERGENIC
3R	16835535	3R_16835535_SNP [dm3] 3R_21009813_SNP [dm6]	G	A	6.193e^-5	0.702	UTR_3_PRIME Calx INTRON Calx
3R	25799572	3R_25799572_SNP [dm3] 3R_29973850_SNP [dm6]	C	T	6.242e^-5	0.702	INTERGENIC
3R	19332053	3R_19332053_SNP [dm3] 3R_23506331_SNP [dm6]	T	C	6.274e^-5	0.702	DOWNSTREAM CG34289 INTERGENIC
2L	20795188	2L_20795188_SNP [dm3] 2L_20795188_SNP [dm6]	A	G	6.282e^-5	0.702	INTRON vari EXON CR44146
3R	13615940	3R_13615940_SNP [dm3] 3R_17790218_SNP [dm6]	A	C	6.308e^-5	0.702	INTRON CG43102
2R	9056977	2R_9056977_SNP [dm3] 2R_13169472_SNP [dm6]	A	G	6.368e^-5	0.702	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9056998	2R_9056998_SNP [dm3] 2R_13169493_SNP [dm6]	C	T	6.368e^-5	0.702	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9057003	2R_9057003_SNP [dm3] 2R_13169498_SNP [dm6]	T	A	6.368e^-5	0.702	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	1252526	3L_1252526_SNP [dm3] 3L_1252526_SNP [dm6]	A	C	6.381e^-5	0.702	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4333910	2L_4333910_SNP [dm3] 2L_4333910_SNP [dm6]	A	G	6.394e^-5	0.702	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16954815	2R_16954815_SNP [dm3] 2R_21067310_SNP [dm6]	T	A	6.426e^-5	0.702	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12660308	2R_12660308_SNP [dm3] 2R_16772803_SNP [dm6]	A	T	6.433e^-5	0.702	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26301892	3R_26301892_SNP [dm3] 3R_30476170_SNP [dm6]	G	A	6.435e^-5	0.702	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5422488	3L_5422488_SNP [dm3] 3L_5429388_SNP [dm6]	T	A	6.507e^-5	0.702	UTR_5_PRIME CG34391
2L	16538055	2L_16538055_SNP [dm3] 2L_16538055_SNP [dm6]	A	T	6.510e^-5	0.702	INTERGENIC
2R	4090553	2R_4090553_INS [dm3] 2R_8203048_INS [dm6]	A	AGA	6.543e^-5	0.702	INTRON LRP1
3L	9037791	3L_9037791_SNP [dm3] 3L_9044691_SNP [dm6]	C	A	6.558e^-5	0.702	NON_SYNONYMOUS_CODING Doc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12636345	2R_12636345_SNP [dm3] 2R_16748840_SNP [dm6]	C	A	6.609e^-5	0.702	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
3R	13615931	3R_13615931_SNP [dm3] 3R_17790209_SNP [dm6]	C	T	6.611e^-5	0.702	INTRON CG43102
3L	5421659	3L_5421659_SNP [dm3] 3L_5428559_SNP [dm6]	C	T	6.632e^-5	0.702	INTRON CG34391
3R	25758291	3R_25758291_SNP [dm3] 3R_29932569_SNP [dm6]	G	A	6.848e^-5	0.705	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22733234	3R_22733234_SNP [dm3] 3R_26907512_SNP [dm6]	G	A	6.862e^-5	0.705	INTRON T48
2R	6919722	2R_6919722_SNP [dm3] 2R_11032217_SNP [dm6]	G	T	6.874e^-5	0.705	INTRON luna
2R	12566677	2R_12566677_SNP [dm3] 2R_16679172_SNP [dm6]	G	A	6.890e^-5	0.705	SYNONYMOUS_CODING CG30463
2L	1939430	2L_1939430_SNP [dm3] 2L_1939430_SNP [dm6]	T	C	6.906e^-5	0.705	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6430507	3R_6430507_SNP [dm3] 3R_10604785_SNP [dm6]	A	T	6.920e^-5	0.705	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6436201	3R_6436201_SNP [dm3] 3R_10610479_SNP [dm6]	A	C	6.941e^-5	0.705	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8003248	3R_8003248_SNP [dm3] 3R_12177526_SNP [dm6]	G	T	6.977e^-5	0.705	INTERGENIC
2R	12665706	2R_12665706_SNP [dm3] 2R_16778201_SNP [dm6]	G	T	6.995e^-5	0.705	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	307423	2L_307423_SNP [dm3] 2L_307423_SNP [dm6]	A	G	7.154e^-5	0.711	INTRON Plc21C	TF binding site mE1_TFBS_Trl
3R	20514084	3R_20514084_SNP [dm3] 3R_24688362_SNP [dm6]	C	T	7.254e^-5	0.711	INTRON slo
3R	25771340	3R_25771340_SNP [dm3] 3R_29945618_SNP [dm6]	A	G	7.409e^-5	0.711	SYNONYMOUS_CODING CG15523
2R	14302628	2R_14302628_SNP [dm3] 2R_18415123_SNP [dm6]	G	A	7.439e^-5	0.711	INTRON Dp1	TF binding site mE1_TFBS_cad
3R	21784955	3R_21784955_SNP [dm3] 3R_25959233_SNP [dm6]	G	T	7.488e^-5	0.711	UPSTREAM CG14540 INTERGENIC
X	14368122	X_14368122_SNP [dm3] X_14474089_SNP [dm6]	G	A	7.497e^-5	0.711	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7650590	2L_7650590_INS [dm3] 2L_7650590_INS [dm6]	T	TT	7.511e^-5	0.711	INTRON Slob
3L	17925384	3L_17925384_INS [dm3] 3L_17932284_INS [dm6]	T	TT	7.578e^-5	0.711	INTERGENIC
X	20873938	X_20873938_SNP [dm3] X_21002911_SNP [dm6]	T	G	7.796e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	26300401	3R_26300401_SNP [dm3] 3R_30474679_SNP [dm6]	C	T	7.953e^-5	0.711	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12665681	2R_12665681_SNP [dm3] 2R_16778176_SNP [dm6]	A	G	8.045e^-5	0.711	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9056996	2R_9056996_SNP [dm3] 2R_13169491_SNP [dm6]	T	G	8.077e^-5	0.711	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2L	12015921	2L_12015921_SNP [dm3] 2L_12015921_SNP [dm6]	T	C	8.079e^-5	0.711	NON_SYNONYMOUS_CODING CG6734
2R	12033328	2R_12033328_SNP [dm3] 2R_16145823_SNP [dm6]	T	C	8.109e^-5	0.711	UTR_3_PRIME Aats-cys DOWNSTREAM Ext2
2R	12665675	2R_12665675_SNP [dm3] 2R_16778170_SNP [dm6]	T	A	8.165e^-5	0.711	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27319866	3R_27319866_SNP [dm3] 3R_31494144_SNP [dm6]	C	A	8.185e^-5	0.711	INTERGENIC
2L	4371506	2L_4371506_SNP [dm3] 2L_4371506_SNP [dm6]	G	T	8.208e^-5	0.711	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	8601907	X_8601907_SNP [dm3] X_8707874_SNP [dm6]	C	T	8.271e^-5	0.711	UPSTREAM CR44508 EXON CR44507
3R	27319857	3R_27319857_SNP [dm3] 3R_31494135_SNP [dm6]	A	G	8.273e^-5	0.711	INTERGENIC
3L	481715	3L_481715_SNP [dm3] 3L_481715_SNP [dm6]	T	A	8.279e^-5	0.711	INTRON klar
2L	5082595	2L_5082595_SNP [dm3] 2L_5082595_SNP [dm6]	T	C	8.324e^-5	0.711	INTRON pgant5
X	20678480	X_20678480_SNP [dm3] X_20807453_SNP [dm6]	C	T	8.340e^-5	0.711	INTRON shakB
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	8.349e^-5	0.711	INTERGENIC
3L	10505497	3L_10505497_SNP [dm3] 3L_10512397_SNP [dm6]	C	T	8.356e^-5	0.711	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
X	20873873	X_20873873_SNP [dm3] X_21002846_SNP [dm6]	C	T	8.373e^-5	0.711	INTERGENIC	transposable element FlyBase
3R	16847043	3R_16847043_SNP [dm3] 3R_21021321_SNP [dm6]	A	G	8.397e^-5	0.711	DOWNSTREAM Rlip INTRON CG17278
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	8.429e^-5	0.711	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1234125	3L_1234125_SNP [dm3] 3L_1234125_SNP [dm6]	G	T	8.485e^-5	0.711	UPSTREAM CG33966 DOWNSTREAM CG33965 INTERGENIC
2L	12016061	2L_12016061_SNP [dm3] 2L_12016061_SNP [dm6]	C	T	8.512e^-5	0.711	SYNONYMOUS_CODING CG6734
3R	15277903	3R_15277903_SNP [dm3] 3R_19452181_SNP [dm6]	G	T	8.516e^-5	0.711	INTRON CG31221
3L	3771751	3L_3771751_SNP [dm3] 3L_3771751_SNP [dm6]	A	C	8.579e^-5	0.711	INTRON CG32264
2R	18515024	2R_18515024_SNP [dm3] 2R_22627519_SNP [dm6]	T	G	8.579e^-5	0.711	INTRON CG33143	TF binding site mE1_TFBS_chinmo
3R	14391255	3R_14391255_SNP [dm3] 3R_18565533_SNP [dm6]	A	T	8.581e^-5	0.711	UPSTREAM CG43210 & 1 other INTERGENIC
3R	25780209	3R_25780209_SNP [dm3] 3R_29954487_SNP [dm6]	C	A	8.661e^-5	0.711	INTRON TkR99D
2R	7025283	2R_7025283_SNP [dm3] 2R_11137778_SNP [dm6]	A	T	8.682e^-5	0.711	INTRON BBS4
3L	1247440	3L_1247440_SNP [dm3] 3L_1247440_SNP [dm6]	T	G	8.724e^-5	0.711	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3553822	3L_3553822_SNP [dm3] 3L_3553822_SNP [dm6]	G	C	8.812e^-5	0.711	INTRON Eip63E
3R	24833324	3R_24833324_SNP [dm3] 3R_29007602_SNP [dm6]	C	A	8.814e^-5	0.711	INTRON wat
2L	2932881	2L_2932881_SNP [dm3] 2L_2932881_SNP [dm6]	A	T	8.864e^-5	0.711	INTRON lilli
3R	13776798	3R_13776798_DEL [dm3] 3R_17951076_DEL [dm6]	TATATAA	C	8.877e^-5	0.711	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15202880	2R_15202880_SNP [dm3] 2R_19315375_SNP [dm6]	G	A	8.919e^-5	0.711	INTRON Rgk1
2L	9860727	2L_9860727_SNP [dm3] 2L_9860727_SNP [dm6]	G	A	8.920e^-5	0.711	INTRON nAChRalpha6
3L	1247883	3L_1247883_SNP [dm3] 3L_1247883_SNP [dm6]	G	A	8.940e^-5	0.711	UTR_5_PRIME Sac1 UPSTREAM CG32318 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9057007	2R_9057007_SNP [dm3] 2R_13169502_SNP [dm6]	T	C	8.945e^-5	0.711	SPLICE_SITE_REGION Spt-I INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	19005171	2R_19005171_SNP [dm3] 2R_23117648_SNP [dm6]	T	G	8.946e^-5	0.711	INTERGENIC
3L	16309484	3L_16309484_SNP [dm3] 3L_16316384_SNP [dm6]	A	C	9.021e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	9.026e^-5	0.711	INTERGENIC
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	9.132e^-5	0.711	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6869702	X_6869702_SNP [dm3] X_6975669_SNP [dm6]	C	G	9.147e^-5	0.711	INTRON ogre
3R	13918362	3R_13918362_SNP [dm3] 3R_18092640_SNP [dm6]	T	C	9.269e^-5	0.711	INTRON sr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1248962	3L_1248962_SNP [dm3] 3L_1248962_SNP [dm6]	C	T	9.329e^-5	0.711	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	19818500	2R_19818500_SNP [dm3] 2R_23930977_SNP [dm6]	A	G	9.348e^-5	0.711	SYNONYMOUS_CODING Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16932400	2R_16932400_SNP [dm3] 2R_21044895_SNP [dm6]	C	T	9.439e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2667907	3L_2667907_SNP [dm3] 3L_2667907_SNP [dm6]	A	G	9.481e^-5	0.711	INTRON Fife
2L	7867323	2L_7867323_SNP [dm3] 2L_7867323_SNP [dm6]	C	T	9.524e^-5	0.711	INTRON Proc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25793859	3R_25793859_SNP [dm3] 3R_29968137_SNP [dm6]	C	A	9.606e^-5	0.711	INTRON TkR99D
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	9.622e^-5	0.711	INTERGENIC
3L	3794142	3L_3794142_DEL [dm3] 3L_3794142_DEL [dm6]	TT	T	9.643e^-5	0.711	INTRON CG32264
3L	1249946	3L_1249946_SNP [dm3] 3L_1249946_SNP [dm6]	C	T	9.720e^-5	0.711	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129
2R	11649741	2R_11649741_SNP [dm3] 2R_15762236_SNP [dm6]	A	G	9.797e^-5	0.711	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	3875223	3L_3875223_SNP [dm3] 3L_3875223_SNP [dm6]	C	T	9.798e^-5	0.711	INTERGENIC
3R	25076035	3R_25076035_SNP [dm3] 3R_29250313_SNP [dm6]	C	T	9.804e^-5	0.711	UTR_5_PRIME SP1029 INTRON SP1029
X	8601837	X_8601837_INS [dm3] X_8707804_INS [dm6]	T	TTTTACTACAT...	9.805e^-5	0.711	UPSTREAM CR44508 EXON CR44507
X	8602687	X_8602687_SNP [dm3] X_8708654_SNP [dm6]	A	T	9.809e^-5	0.711	UPSTREAM CR44507 & 1 other DOWNSTREAM CR44508 INTERGENIC
2R	13339191	2R_13339191_SNP [dm3] 2R_17451686_SNP [dm6]	A	G	9.838e^-5	0.711	UPSTREAM mthl3 INTRON mthl3	transposable element FlyBase
X	15576716	X_15576716_SNP [dm3] X_15682683_SNP [dm6]	A	G	9.845e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20781254	2L_20781254_SNP [dm3] 2L_20781254_SNP [dm6]	C	G	9.872e^-5	0.711	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13906367	X_13906367_SNP [dm3] X_14012334_SNP [dm6]	G	T	9.910e^-5	0.711	INTERGENIC
2R	19239465	2R_19239465_SNP [dm3] 2R_23351942_SNP [dm6]	T	C	1.002e^-4	0.711	SYNONYMOUS_CODING CG34210	TF binding site BDTNP1_TFBS_prd
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	1.015e^-4	0.711	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5883273	3R_5883273_SNP [dm3] 3R_10057551_SNP [dm6]	G	A	1.021e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2480864	3R_2480864_SNP [dm3] 3R_6655142_SNP [dm6]	T	C	1.024e^-4	0.711	DOWNSTREAM CG1307 INTRON Taf1
3R	9950932	3R_9950932_SNP [dm3] 3R_14125210_SNP [dm6]	G	A	1.025e^-4	0.711	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
2L	11881419	2L_11881419_SNP [dm3] 2L_11881419_SNP [dm6]	C	G	1.034e^-4	0.711	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	26897265	3R_26897265_SNP [dm3] 3R_31071543_SNP [dm6]	C	T	1.034e^-4	0.711	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	26897266	3R_26897266_SNP [dm3] 3R_31071544_SNP [dm6]	C	T	1.034e^-4	0.711	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	10505510	3L_10505510_DEL [dm3] 3L_10512410_DEL [dm6]	GC	T	1.036e^-4	0.711	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2R	18981261	2R_18981261_SNP [dm3] 2R_23093738_SNP [dm6]	T	A	1.037e^-4	0.711	NON_SYNONYMOUS_CODING CG9876
2L	8168783	2L_8168783_SNP [dm3] 2L_8168783_SNP [dm6]	T	C	1.040e^-4	0.711	INTRON Piezo
3L	7457004	3L_7457004_SNP [dm3] 3L_7463904_SNP [dm6]	T	G	1.045e^-4	0.711	INTERGENIC
3R	2291860	3R_2291860_DEL [dm3] 3R_6466138_DEL [dm6]	GTAC	G	1.048e^-4	0.711	INTERGENIC
3R	9614028	3R_9614028_SNP [dm3] 3R_13788306_SNP [dm6]	T	A	1.049e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13892490	3R_13892490_SNP [dm3] 3R_18066768_SNP [dm6]	A	G	1.050e^-4	0.711	INTERGENIC
2L	13641461	2L_13641461_SNP [dm3] 2L_13641461_SNP [dm6]	C	T	1.054e^-4	0.711	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25330575	3R_25330575_SNP [dm3] 3R_29504853_SNP [dm6]	T	A	1.055e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9381915	3L_9381915_SNP [dm3] 3L_9388815_SNP [dm6]	G	A	1.058e^-4	0.711	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25075553	3R_25075553_SNP [dm3] 3R_29249831_SNP [dm6]	A	C	1.058e^-4	0.711	UPSTREAM SP1029 INTRON SP1029
3R	13776771	3R_13776771_SNP [dm3] 3R_17951049_SNP [dm6]	G	T	1.059e^-4	0.711	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20795103	2L_20795103_SNP [dm3] 2L_20795103_SNP [dm6]	G	A	1.061e^-4	0.711	UPSTREAM vari INTRON vari EXON CR44146
2L	6850475	2L_6850475_SNP [dm3] 2L_6850475_SNP [dm6]	G	A	1.062e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25807254	3R_25807254_SNP [dm3] 3R_29981532_SNP [dm6]	G	A	1.063e^-4	0.711	INTERGENIC
3R	20844201	3R_20844201_SNP [dm3] 3R_25018479_SNP [dm6]	G	A	1.066e^-4	0.711	NON_SYNONYMOUS_CODING tnc
3L	1249178	3L_1249178_SNP [dm3] 3L_1249178_SNP [dm6]	G	A	1.066e^-4	0.711	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	17289200	3R_17289200_SNP [dm3] 3R_21463478_SNP [dm6]	G	A	1.067e^-4	0.711	INTERGENIC
3L	4093952	3L_4093952_SNP [dm3] 3L_4093952_SNP [dm6]	C	T	1.069e^-4	0.711	SYNONYMOUS_CODING CG14990 DOWNSTREAM CG14995	TF binding site mE1_TFBS_cad
3R	26155452	3R_26155452_SNP [dm3] 3R_30329730_SNP [dm6]	G	C	1.072e^-4	0.711	INTRON hdc
2R	11831425	2R_11831425_SNP [dm3] 2R_15943920_SNP [dm6]	A	C	1.075e^-4	0.711	UPSTREAM CG30093 INTRON Cyp4aa1
2L	11881427	2L_11881427_SNP [dm3] 2L_11881427_SNP [dm6]	A	G	1.081e^-4	0.711	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	4979072	3L_4979072_INS [dm3] 3L_4979072_INS [dm6]	A	AA	1.088e^-4	0.711	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5899907	X_5899907_SNP [dm3] X_6005874_SNP [dm6]	T	G	1.091e^-4	0.711	DOWNSTREAM CR44498 INTERGENIC
3L	5693480	3L_5693480_SNP [dm3] 3L_5700380_SNP [dm6]	C	G	1.094e^-4	0.711	INTRON sif
3R	9951502	3R_9951502_SNP [dm3] 3R_14125780_SNP [dm6]	C	T	1.097e^-4	0.711	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13897276	2R_13897276_SNP [dm3] 2R_18009771_SNP [dm6]	A	G	1.098e^-4	0.711	INTERGENIC
3L	1287639	3L_1287639_SNP [dm3] 3L_1287639_SNP [dm6]	T	A	1.106e^-4	0.711	INTRON CG32333
2R	18664929	2R_18664929_SNP [dm3] 2R_22777424_SNP [dm6]	C	A	1.110e^-4	0.711	INTRON CG42260
X	13905861	X_13905861_SNP [dm3] X_14011828_SNP [dm6]	A	T	1.115e^-4	0.711	INTERGENIC
3R	2970606	3R_2970606_SNP [dm3] 3R_7144884_SNP [dm6]	G	A	1.118e^-4	0.711	UPSTREAM CG14610 DOWNSTREAM CR42738 & 1 other INTRON CG2656	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18841169	3L_18841169_SNP [dm3] 3L_18848069_SNP [dm6]	A	T	1.120e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14391264	3R_14391264_SNP [dm3] 3R_18565542_SNP [dm6]	C	T	1.121e^-4	0.711	UPSTREAM CG43210 & 1 other INTERGENIC
3R	26826656	3R_26826656_SNP [dm3] 3R_31000934_SNP [dm6]	C	T	1.123e^-4	0.711	INTRON 5-HT7
3L	4891954	3L_4891954_SNP [dm3] 3L_4891954_SNP [dm6]	A	T	1.135e^-4	0.716	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13905769	X_13905769_SNP [dm3] X_14011736_SNP [dm6]	C	A	1.141e^-4	0.718	INTERGENIC
3L	11508520	3L_11508520_SNP [dm3] 3L_11515420_SNP [dm6]	T	C	1.146e^-4	0.718	INTRON CG7512
X	8753729	X_8753729_SNP [dm3] X_8859696_SNP [dm6]	G	A	1.155e^-4	0.72	INTRON CG12075
3L	3549712	3L_3549712_SNP [dm3] 3L_3549712_SNP [dm6]	A	T	1.157e^-4	0.72	INTRON Eip63E
X	14032232	X_14032232_SNP [dm3] X_14138199_SNP [dm6]	T	C	1.165e^-4	0.72	INTERGENIC
X	19934959	X_19934959_SNP [dm3] X_20040926_SNP [dm6]	A	C	1.165e^-4	0.72	INTRON Dop2R
3L	9905355	3L_9905355_SNP [dm3] 3L_9912255_SNP [dm6]	G	C	1.167e^-4	0.72	INTRON CG34356
3L	5486344	3L_5486344_SNP [dm3] 3L_5493244_SNP [dm6]	C	G	1.189e^-4	0.726	DOWNSTREAM CR44520 INTERGENIC
2R	18966764	2R_18966764_SNP [dm3] 2R_23079241_SNP [dm6]	A	T	1.189e^-4	0.726	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25661516	3R_25661516_SNP [dm3] 3R_29835794_SNP [dm6]	A	T	1.192e^-4	0.726	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site mE1_TFBS_HSA
3L	18948242	3L_18948242_SNP [dm3] 3L_18955142_SNP [dm6]	A	G	1.194e^-4	0.726	INTRON CG6836
3L	5693474	3L_5693474_SNP [dm3] 3L_5700374_SNP [dm6]	C	T	1.212e^-4	0.726	INTRON sif
3L	7269970	3L_7269970_SNP [dm3] 3L_7276870_SNP [dm6]	G	T	1.214e^-4	0.726	INTRON unc-13-4A
3L	3794055	3L_3794055_SNP [dm3] 3L_3794055_SNP [dm6]	C	A	1.219e^-4	0.726	INTRON CG32264
X	11570935	X_11570935_SNP [dm3] X_11676902_SNP [dm6]	T	A	1.228e^-4	0.726	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_kn
3R	15277947	3R_15277947_SNP [dm3] 3R_19452225_SNP [dm6]	G	A	1.229e^-4	0.726	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	11367817	3L_11367817_SNP [dm3] 3L_11374717_SNP [dm6]	T	C	1.232e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5390310	X_5390310_SNP [dm3] X_5496277_SNP [dm6]	A	G	1.234e^-4	0.726	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	2004298	3L_2004298_SNP [dm3] 3L_2004298_SNP [dm6]	T	A	1.236e^-4	0.726	DOWNSTREAM CG42841 INTRON CG42841
3L	11508979	3L_11508979_SNP [dm3] 3L_11515879_SNP [dm6]	G	A	1.236e^-4	0.726	INTRON CG7512
2R	12665678	2R_12665678_SNP [dm3] 2R_16778173_SNP [dm6]	A	G	1.251e^-4	0.726	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4371522	2L_4371522_SNP [dm3] 2L_4371522_SNP [dm6]	T	A	1.253e^-4	0.726	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	13640649	2L_13640649_SNP [dm3] 2L_13640649_SNP [dm6]	G	A	1.254e^-4	0.726	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1253832	3L_1253832_SNP [dm3] 3L_1253832_SNP [dm6]	A	G	1.258e^-4	0.726	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad
2L	4333351	2L_4333351_SNP [dm3] 2L_4333351_SNP [dm6]	C	T	1.258e^-4	0.726	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5440665	3L_5440665_SNP [dm3] 3L_5447565_SNP [dm6]	G	A	1.263e^-4	0.726	INTERGENIC
2R	12660332	2R_12660332_SNP [dm3] 2R_16772827_SNP [dm6]	T	C	1.264e^-4	0.726	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25772879	3R_25772879_SNP [dm3] 3R_29947157_SNP [dm6]	G	C	1.265e^-4	0.726	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19170680	3R_19170680_SNP [dm3] 3R_23344958_SNP [dm6]	C	T	1.271e^-4	0.726	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	5334976	2R_5334976_SNP [dm3] 2R_9447471_SNP [dm6]	T	C	1.274e^-4	0.726	INTRON Camta	TF binding site mE1_TFBS_HSA
2L	2698323	2L_2698323_SNP [dm3] 2L_2698323_SNP [dm6]	A	G	1.278e^-4	0.726	INTRON CG31690
X	6962657	X_6962657_SNP [dm3] X_7068624_SNP [dm6]	T	G	1.279e^-4	0.726	UPSTREAM CG4607 INTERGENIC
3R	25075544	3R_25075544_SNP [dm3] 3R_29249822_SNP [dm6]	A	G	1.288e^-4	0.726	UPSTREAM SP1029 INTRON SP1029
3L	1290222	3L_1290222_SNP [dm3] 3L_1290222_SNP [dm6]	T	G	1.288e^-4	0.726	INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11844756	X_11844756_DEL [dm3] X_11950723_DEL [dm6]	ATA	A	1.294e^-4	0.726	INTRON cac
3R	25075645	3R_25075645_SNP [dm3] 3R_29249923_SNP [dm6]	A	T	1.296e^-4	0.726	INTRON SP1029
3L	10620466	3L_10620466_SNP [dm3] 3L_10627366_SNP [dm6]	A	G	1.302e^-4	0.726	SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
X	18911717	X_18911717_SNP [dm3] X_19017684_SNP [dm6]	G	A	1.305e^-4	0.726	INTRON CG43759	TF binding site mE1_TFBS_inv
3L	11886516	3L_11886516_SNP [dm3] 3L_11893416_SNP [dm6]	G	T	1.305e^-4	0.726	INTRON CG44837
3L	18841148	3L_18841148_SNP [dm3] 3L_18848048_SNP [dm6]	C	T	1.306e^-4	0.726	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4826801	2L_4826801_SNP [dm3] 2L_4826801_SNP [dm6]	G	A	1.318e^-4	0.728	SYNONYMOUS_CODING CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2042423	2L_2042423_SNP [dm3] 2L_2042423_SNP [dm6]	T	C	1.325e^-4	0.728	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12629785	2R_12629785_SNP [dm3] 2R_16742280_SNP [dm6]	T	C	1.328e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9481113	3L_9481113_SNP [dm3] 3L_9488013_SNP [dm6]	T	C	1.331e^-4	0.728	UPSTREAM pall DOWNSTREAM CG32036 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3140647	2L_3140647_SNP [dm3] 2L_3140647_SNP [dm6]	C	A	1.333e^-4	0.728	INTRON toc
2L	15354587	2L_15354587_SNP [dm3] 2L_15354587_SNP [dm6]	C	A	1.339e^-4	0.728	INTERGENIC
2L	15354971	2L_15354971_SNP [dm3] 2L_15354971_SNP [dm6]	T	C	1.339e^-4	0.728	INTERGENIC
2L	15354980	2L_15354980_DEL [dm3] 2L_15354980_DEL [dm6]	ATCGAATATACCCATTATAT...	A	1.339e^-4	0.728	INTERGENIC
3R	24545175	3R_24545175_SNP [dm3] 3R_28719453_SNP [dm6]	C	T	1.355e^-4	0.734	INTRON htt	TF binding site mE1_TFBS_chinmo
2R	10193834	2R_10193834_SNP [dm3] 2R_14306329_SNP [dm6]	A	C	1.359e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25144965	3R_25144965_SNP [dm3] 3R_29319243_SNP [dm6]	C	G	1.365e^-4	0.735	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25808827	3R_25808827_SNP [dm3] 3R_29983105_SNP [dm6]	G	A	1.371e^-4	0.735	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	1.374e^-4	0.735	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9910918	3L_9910918_SNP [dm3] 3L_9917818_SNP [dm6]	G	C	1.389e^-4	0.735	INTRON CG34356
3R	9686426	3R_9686426_DEL [dm3] 3R_13860704_DEL [dm6]	TGC	T	1.393e^-4	0.735	INTERGENIC
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	1.399e^-4	0.735	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	3798224	3L_3798224_SNP [dm3] 3L_3798224_SNP [dm6]	A	C	1.400e^-4	0.735	INTRON CG32264
3L	11367891	3L_11367891_SNP [dm3] 3L_11374791_SNP [dm6]	T	A	1.401e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	6430491	3R_6430491_SNP [dm3] 3R_10604769_SNP [dm6]	T	C	1.403e^-4	0.735	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5734188	3L_5734188_SNP [dm3] 3L_5741088_SNP [dm6]	T	A	1.404e^-4	0.735	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1028953	3L_1028953_SNP [dm3] 3L_1028953_SNP [dm6]	A	C	1.408e^-4	0.735	INTRON trio
X	5899924	X_5899924_SNP [dm3] X_6005891_SNP [dm6]	C	A	1.408e^-4	0.735	DOWNSTREAM CR44498 INTERGENIC
3R	3022243	3R_3022243_SNP [dm3] 3R_7196521_SNP [dm6]	T	C	1.416e^-4	0.735	INTRON lap
3R	4678917	3R_4678917_SNP [dm3] 3R_8853195_SNP [dm6]	A	T	1.425e^-4	0.735	INTRON pyd
2L	11881613	2L_11881613_SNP [dm3] 2L_11881613_SNP [dm6]	T	C	1.428e^-4	0.735	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	3794061	3L_3794061_SNP [dm3] 3L_3794061_SNP [dm6]	A	C	1.437e^-4	0.735	INTRON CG32264
X	16258696	X_16258696_SNP [dm3] X_16364663_SNP [dm6]	T	C	1.437e^-4	0.735	INTRON nonA
2R	7025238	2R_7025238_SNP [dm3] 2R_11137733_SNP [dm6]	A	G	1.438e^-4	0.735	INTRON BBS4
3R	25661522	3R_25661522_SNP [dm3] 3R_29835800_SNP [dm6]	T	C	1.442e^-4	0.735	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site mE1_TFBS_HSA
3L	1320141	3L_1320141_SNP [dm3] 3L_1320141_SNP [dm6]	T	A	1.443e^-4	0.735	UPSTREAM Myo61F INTRON Myo61F
X	8601888	X_8601888_SNP [dm3] X_8707855_SNP [dm6]	G	T	1.449e^-4	0.735	UPSTREAM CR44508 EXON CR44507
3L	6754329	3L_6754329_SNP [dm3] 3L_6761229_SNP [dm6]	C	T	1.453e^-4	0.735	UPSTREAM CG32392 INTRON CG32392
2L	330209	2L_330209_INS [dm3] 2L_330209_INS [dm6]	T	TTTCTCAGAAGCACTTGCAC...	1.463e^-4	0.735	UPSTREAM CG43755 INTRON Plc21C	TF binding site mE1_TFBS_cad
3R	17289542	3R_17289542_SNP [dm3] 3R_21463820_SNP [dm6]	C	G	1.470e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	13641342	2L_13641342_SNP [dm3] 2L_13641342_SNP [dm6]	C	A	1.489e^-4	0.735	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8060617	3L_8060617_SNP [dm3] 3L_8067517_SNP [dm6]	G	T	1.492e^-4	0.735	DOWNSTREAM tRNA:CR32363 & 1 other INTRON Ect4	TF binding site mE1_TFBS_sens
3L	6131752	3L_6131752_SNP [dm3] 3L_6138652_SNP [dm6]	A	G	1.496e^-4	0.735	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
3L	10431013	3L_10431013_SNP [dm3] 3L_10437913_SNP [dm6]	G	A	1.503e^-4	0.735	INTERGENIC
2L	3151877	2L_3151877_SNP [dm3] 2L_3151877_SNP [dm6]	C	G	1.503e^-4	0.735	INTRON Mad
3L	8864803	3L_8864803_SNP [dm3] 3L_8871703_SNP [dm6]	T	G	1.507e^-4	0.735	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	8164196	2L_8164196_SNP [dm3] 2L_8164196_SNP [dm6]	A	G	1.507e^-4	0.735	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8601446	X_8601446_SNP [dm3] X_8707413_SNP [dm6]	A	G	1.509e^-4	0.735	UPSTREAM CR44508 EXON CR44507
3R	15278006	3R_15278006_SNP [dm3] 3R_19452284_SNP [dm6]	C	T	1.511e^-4	0.735	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	1.517e^-4	0.735	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6646050	3R_6646050_SNP [dm3] 3R_10820328_SNP [dm6]	C	G	1.517e^-4	0.735	INTERGENIC
3L	21759519	3L_21759519_SNP [dm3] 3L_21766419_SNP [dm6]	G	A	1.522e^-4	0.735	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5685408	3L_5685408_SNP [dm3] 3L_5692308_SNP [dm6]	G	T	1.528e^-4	0.735	INTRON sif
3R	2304905	3R_2304905_SNP [dm3] 3R_6479183_SNP [dm6]	C	A	1.531e^-4	0.735	UTR_5_PRIME CG15186
X	10406022	X_10406022_SNP [dm3] X_10511989_SNP [dm6]	G	A	1.533e^-4	0.735	INTRON spri
3L	9522699	3L_9522699_SNP [dm3] 3L_9529599_SNP [dm6]	T	A	1.534e^-4	0.735	INTRON Or67a
2R	17272735	2R_17272735_SNP [dm3] 2R_21385230_SNP [dm6]	G	C	1.540e^-4	0.735	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2R	17272742	2R_17272742_SNP [dm3] 2R_21385237_SNP [dm6]	G	T	1.540e^-4	0.735	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2R	401136	2R_401136_SNP [dm3] 2R_4513631_SNP [dm6]	C	T	1.545e^-4	0.735	INTERGENIC	transposable element FlyBase
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	1.548e^-4	0.735	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7012115	2L_7012115_SNP [dm3] 2L_7012115_SNP [dm6]	T	C	1.556e^-4	0.735	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26652360	3R_26652360_SNP [dm3] 3R_30826638_SNP [dm6]	A	T	1.558e^-4	0.735	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
3R	2480872	3R_2480872_SNP [dm3] 3R_6655150_SNP [dm6]	A	G	1.559e^-4	0.735	DOWNSTREAM CG1307 INTRON Taf1
2R	7025292	2R_7025292_SNP [dm3] 2R_11137787_SNP [dm6]	C	T	1.563e^-4	0.735	INTRON BBS4
3L	3796583	3L_3796583_SNP [dm3] 3L_3796583_SNP [dm6]	T	C	1.572e^-4	0.735	INTRON CG32264
3L	11508999	3L_11508999_SNP [dm3] 3L_11515899_SNP [dm6]	C	G	1.573e^-4	0.735	INTRON CG7512
X	20682060	X_20682060_SNP [dm3] X_20811033_SNP [dm6]	T	C	1.578e^-4	0.735	INTRON shakB
2L	16537942	2L_16537942_SNP [dm3] 2L_16537942_SNP [dm6]	G	A	1.579e^-4	0.735	INTERGENIC
3L	6913150	3L_6913150_SNP [dm3] 3L_6920050_SNP [dm6]	C	A	1.585e^-4	0.735	INTERGENIC
2R	12665602	2R_12665602_SNP [dm3] 2R_16778097_SNP [dm6]	A	G	1.588e^-4	0.735	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10579798	3L_10579798_SNP [dm3] 3L_10586698_SNP [dm6]	C	A	1.589e^-4	0.735	INTRON A2bp1
2L	2042399	2L_2042399_SNP [dm3] 2L_2042399_SNP [dm6]	A	G	1.594e^-4	0.735	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15679506	2R_15679506_SNP [dm3] 2R_19792001_SNP [dm6]	T	C	1.596e^-4	0.735	INTERGENIC
2R	16932131	2R_16932131_DEL [dm3] 2R_21044626_DEL [dm6]	TACAT	T	1.598e^-4	0.735	INTERGENIC
2R	18925957	2R_18925957_SNP [dm3] 2R_23038434_SNP [dm6]	T	A	1.601e^-4	0.735	INTRON twi & 1 other
2R	13076707	2R_13076707_SNP [dm3] 2R_17189202_SNP [dm6]	G	A	1.605e^-4	0.735	UPSTREAM CR45323 & 1 other INTERGENIC
X	20680902	X_20680902_SNP [dm3] X_20809875_SNP [dm6]	C	T	1.611e^-4	0.735	INTRON shakB
3L	2803748	3L_2803748_SNP [dm3] 3L_2803748_SNP [dm6]	G	A	1.612e^-4	0.735	INTRON CG43444
3L	3795078	3L_3795078_SNP [dm3] 3L_3795078_SNP [dm6]	T	G	1.616e^-4	0.735	UPSTREAM CG32264 INTRON CG32264
3L	20135280	3L_20135280_SNP [dm3] 3L_20142180_SNP [dm6]	G	A	1.618e^-4	0.735	INTERGENIC
3L	2002301	3L_2002301_SNP [dm3] 3L_2002301_SNP [dm6]	C	G	1.630e^-4	0.735	DOWNSTREAM CG42841 INTERGENIC
3L	1249513	3L_1249513_SNP [dm3] 3L_1249513_SNP [dm6]	C	G	1.635e^-4	0.735	NON_SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2803751	3L_2803751_SNP [dm3] 3L_2803751_SNP [dm6]	T	G	1.638e^-4	0.735	INTRON CG43444
3R	21796976	3R_21796976_INS [dm3] 3R_25971254_INS [dm6]	T	TT	1.644e^-4	0.735	INTRON CG42261
3R	25783282	3R_25783282_SNP [dm3] 3R_29957560_SNP [dm6]	A	G	1.649e^-4	0.735	INTRON TkR99D
X	9233905	X_9233905_SNP [dm3] X_9339872_SNP [dm6]	T	A	1.658e^-4	0.735	INTRON CG34449
3R	6201614	3R_6201614_SNP [dm3] 3R_10375892_SNP [dm6]	T	G	1.662e^-4	0.735	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2920818	3L_2920818_SNP [dm3] 3L_2920818_SNP [dm6]	G	A	1.664e^-4	0.735	INTRON Shab
3R	15277898	3R_15277898_SNP [dm3] 3R_19452176_SNP [dm6]	A	G	1.665e^-4	0.735	INTRON CG31221
X	4420818	X_4420818_SNP [dm3] X_4526785_SNP [dm6]	G	A	1.668e^-4	0.735	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	421479	2R_421479_SNP [dm3] 2R_4533974_SNP [dm6]	G	A	1.676e^-4	0.735	INTERGENIC
X	5390266	X_5390266_SNP [dm3] X_5496233_SNP [dm6]	A	G	1.680e^-4	0.735	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2R	12660324	2R_12660324_SNP [dm3] 2R_16772819_SNP [dm6]	C	T	1.686e^-4	0.735	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2685368	3L_2685368_SNP [dm3] 3L_2685368_SNP [dm6]	A	G	1.695e^-4	0.735	INTRON Fife
2R	10267998	2R_10267998_SNP [dm3] 2R_14380493_SNP [dm6]	G	T	1.700e^-4	0.735	INTRON Dh44-R1
2L	15354722	2L_15354722_SNP [dm3] 2L_15354722_SNP [dm6]	G	C	1.704e^-4	0.735	INTERGENIC
3R	15277872	3R_15277872_SNP [dm3] 3R_19452150_SNP [dm6]	A	G	1.704e^-4	0.735	INTRON CG31221
3R	17274987	3R_17274987_SNP [dm3] 3R_21449265_SNP [dm6]	A	G	1.705e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10452725	2L_10452725_SNP [dm3] 2L_10452725_SNP [dm6]	C	T	1.707e^-4	0.735	SYNONYMOUS_CODING CG5322 UPSTREAM ppk10
X	8601831	X_8601831_SNP [dm3] X_8707798_SNP [dm6]	G	A	1.709e^-4	0.735	UPSTREAM CR44508 EXON CR44507
2R	12667258	2R_12667258_SNP [dm3] 2R_16779753_SNP [dm6]	G	T	1.711e^-4	0.735	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	13805837	2R_13805837_SNP [dm3] 2R_17918332_SNP [dm6]	T	A	1.720e^-4	0.735	INTRON Elk
3R	25788494	3R_25788494_SNP [dm3] 3R_29962772_SNP [dm6]	C	T	1.721e^-4	0.735	INTRON TkR99D
X	5390264	X_5390264_SNP [dm3] X_5496231_SNP [dm6]	G	C	1.725e^-4	0.735	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
X	19934286	X_19934286_SNP [dm3] X_20040253_SNP [dm6]	A	G	1.734e^-4	0.735	INTRON Dop2R
3R	6800022	3R_6800022_SNP [dm3] 3R_10974300_SNP [dm6]	T	C	1.735e^-4	0.735	INTRON CG34114
3R	25793928	3R_25793928_SNP [dm3] 3R_29968206_SNP [dm6]	G	A	1.738e^-4	0.735	INTRON TkR99D
3R	26434943	3R_26434943_SNP [dm3] 3R_30609221_SNP [dm6]	C	T	1.743e^-4	0.735	UTR_3_PRIME CG31016
3R	16018136	3R_16018136_SNP [dm3] 3R_20192414_SNP [dm6]	C	G	1.748e^-4	0.735	INTERGENIC
3R	4785414	3R_4785414_SNP [dm3] 3R_8959692_SNP [dm6]	T	A	1.755e^-4	0.735	INTRON CG11966
3L	7298673	3L_7298673_SNP [dm3] 3L_7305573_SNP [dm6]	A	G	1.760e^-4	0.735	INTRON unc-13-4A
X	17286136	X_17286136_SNP [dm3] X_17392103_SNP [dm6]	C	T	1.768e^-4	0.735	INTERGENIC
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	1.768e^-4	0.735	INTRON sty
X	13905863	X_13905863_SNP [dm3] X_14011830_SNP [dm6]	G	A	1.770e^-4	0.735	INTERGENIC
2L	13250521	2L_13250521_SNP [dm3] 2L_13250521_SNP [dm6]	G	A	1.774e^-4	0.735	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
3R	25766105	3R_25766105_SNP [dm3] 3R_29940383_SNP [dm6]	G	C	1.775e^-4	0.735	NON_SYNONYMOUS_CODING CG15523
3L	12709423	3L_12709423_SNP [dm3] 3L_12716323_SNP [dm6]	A	C	1.777e^-4	0.735	INTERGENIC
3R	15148541	3R_15148541_SNP [dm3] 3R_19322819_SNP [dm6]	A	G	1.777e^-4	0.735	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20801722	2L_20801722_SNP [dm3] 2L_20801722_SNP [dm6]	G	A	1.784e^-4	0.735	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11509003	3L_11509003_SNP [dm3] 3L_11515903_SNP [dm6]	A	C	1.785e^-4	0.735	INTRON CG7512
3L	6754356	3L_6754356_SNP [dm3] 3L_6761256_SNP [dm6]	C	T	1.794e^-4	0.735	UPSTREAM CG32392 INTRON CG32392
2R	14302464	2R_14302464_SNP [dm3] 2R_18414959_SNP [dm6]	G	T	1.800e^-4	0.735	INTRON Dp1	TF binding site BDTNP1_TFBS_dl
2R	11835718	2R_11835718_SNP [dm3] 2R_15948213_SNP [dm6]	A	G	1.806e^-4	0.735	SYNONYMOUS_CODING Strn-Mlck DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8983614	3L_8983614_SNP [dm3] 3L_8990514_SNP [dm6]	A	T	1.808e^-4	0.735	UTR_3_PRIME smg UPSTREAM CG5280
3L	1248650	3L_1248650_SNP [dm3] 3L_1248650_SNP [dm6]	G	A	1.808e^-4	0.735	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	10245843	3L_10245843_SNP [dm3] 3L_10252743_SNP [dm6]	T	A	1.815e^-4	0.735	INTERGENIC
2R	19073324	2R_19073324_SNP [dm3] 2R_23185801_SNP [dm6]	C	T	1.820e^-4	0.735	DOWNSTREAM CG13539 INTRON CG34371
2R	18926134	2R_18926134_SNP [dm3] 2R_23038611_SNP [dm6]	A	C	1.820e^-4	0.735	INTRON twi & 1 other
3L	5369371	3L_5369371_SNP [dm3] 3L_5376271_SNP [dm6]	C	T	1.825e^-4	0.735	INTERGENIC
3R	13817979	3R_13817979_SNP [dm3] 3R_17992257_SNP [dm6]	A	G	1.832e^-4	0.735	INTRON cpo
3L	5231642	3L_5231642_DEL [dm3] 3L_5238542_DEL [dm6]	TGGCG	T	1.832e^-4	0.735	INTRON shep
3L	5231662	3L_5231662_SNP [dm3] 3L_5238562_SNP [dm6]	T	C	1.832e^-4	0.735	INTRON shep
2L	20794607	2L_20794607_SNP [dm3] 2L_20794607_SNP [dm6]	T	G	1.851e^-4	0.735	UPSTREAM CR44146 & 1 other INTRON vari	TF binding site mE1_TFBS_HSA
3L	3720037	3L_3720037_SNP [dm3] 3L_3720037_SNP [dm6]	T	C	1.853e^-4	0.735	INTRON CG32264
X	17300643	X_17300643_SNP [dm3] X_17406610_SNP [dm6]	A	G	1.858e^-4	0.735	INTERGENIC
X	20151268	X_20151268_SNP [dm3] X_20280241_SNP [dm6]	C	A	1.864e^-4	0.735	INTERGENIC
3R	26935902	3R_26935902_SNP [dm3] 3R_31110180_SNP [dm6]	A	T	1.866e^-4	0.735	UPSTREAM CG11318 INTERGENIC
3R	26297607	3R_26297607_SNP [dm3] 3R_30471885_SNP [dm6]	T	G	1.869e^-4	0.735	INTRON PH4alphaEFB
3L	14331765	3L_14331765_SNP [dm3] 3L_14338665_SNP [dm6]	C	A	1.876e^-4	0.735	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8603742	X_8603742_SNP [dm3] X_8709709_SNP [dm6]	A	G	1.878e^-4	0.735	UTR_5_PRIME Hexo2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8831198	3L_8831198_SNP [dm3] 3L_8838098_SNP [dm6]	C	T	1.884e^-4	0.735	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	13641346	2L_13641346_SNP [dm3] 2L_13641346_SNP [dm6]	A	T	1.887e^-4	0.735	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7693562	2L_7693562_SNP [dm3] 2L_7693562_SNP [dm6]	A	G	1.891e^-4	0.735	SYNONYMOUS_CODING CG43235 UPSTREAM CG7025 DOWNSTREAM Tep2
3L	7453296	3L_7453296_SNP [dm3] 3L_7460196_SNP [dm6]	A	G	1.893e^-4	0.735	INTERGENIC
2L	18915237	2L_18915237_SNP [dm3] 2L_18915237_SNP [dm6]	T	A	1.896e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_sens
3L	3350529	3L_3350529_SNP [dm3] 3L_3350529_SNP [dm6]	T	C	1.897e^-4	0.735	INTRON kst
2R	17272679	2R_17272679_SNP [dm3] 2R_21385174_SNP [dm6]	C	A	1.902e^-4	0.735	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
3L	7055218	3L_7055218_SNP [dm3] 3L_7062118_SNP [dm6]	A	C	1.909e^-4	0.735	INTRON CG8641
3L	5231602	3L_5231602_DEL [dm3] 3L_5238502_DEL [dm6]	GGACTCAATACAATCCTGTA...	G	1.909e^-4	0.735	INTRON shep
3R	25795878	3R_25795878_SNP [dm3] 3R_29970156_SNP [dm6]	G	T	1.910e^-4	0.735	UPSTREAM TkR99D INTERGENIC
3R	10138040	3R_10138040_SNP [dm3] 3R_14312318_SNP [dm6]	A	G	1.916e^-4	0.735	SYNONYMOUS_CODING CG31321
3L	10543087	3L_10543087_SNP [dm3] 3L_10549987_SNP [dm6]	C	T	1.923e^-4	0.735	INTRON A2bp1
2L	3140672	2L_3140672_SNP [dm3] 2L_3140672_SNP [dm6]	A	T	1.924e^-4	0.735	INTRON toc
X	10803296	X_10803296_SNP [dm3] X_10909263_SNP [dm6]	G	T	1.925e^-4	0.735	INTRON CG43901	TF binding site BDTNP1_TFBS_sna
3R	15277865	3R_15277865_DEL [dm3] 3R_19452143_DEL [dm6]	TT	T	1.937e^-4	0.735	INTRON CG31221
X	20653748	X_20653748_SNP [dm3] X_20782721_SNP [dm6]	G	A	1.952e^-4	0.735	INTRON shakB
3R	25801345	3R_25801345_SNP [dm3] 3R_29975623_SNP [dm6]	C	T	1.960e^-4	0.735	INTERGENIC
X	5899923	X_5899923_SNP [dm3] X_6005890_SNP [dm6]	G	T	1.961e^-4	0.735	DOWNSTREAM CR44498 INTERGENIC
3R	9614032	3R_9614032_INS [dm3] 3R_13788310_INS [dm6]	T	TGAAGTTTATACAACACTTT...	1.967e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8971396	X_8971396_SNP [dm3] X_9077363_SNP [dm6]	T	C	1.969e^-4	0.735	INTRON CG44325	TF binding site mE1_TFBS_inv
2L	18692840	2L_18692840_SNP [dm3] 2L_18692840_SNP [dm6]	T	C	1.972e^-4	0.735	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13805842	2R_13805842_SNP [dm3] 2R_17918337_SNP [dm6]	A	C	1.975e^-4	0.735	INTRON Elk
3R	11213846	3R_11213846_SNP [dm3] 3R_15388124_SNP [dm6]	G	A	1.979e^-4	0.735	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25807368	3R_25807368_SNP [dm3] 3R_29981646_SNP [dm6]	T	G	1.979e^-4	0.735	INTERGENIC
3L	6501555	3L_6501555_SNP [dm3] 3L_6508455_SNP [dm6]	G	C	1.981e^-4	0.735	INTRON sfl
2L	3934587	2L_3934587_SNP [dm3] 2L_3934587_SNP [dm6]	C	A	1.985e^-4	0.735	INTRON fred
2L	11937108	2L_11937108_SNP [dm3] 2L_11937108_SNP [dm6]	C	A	1.986e^-4	0.735	SYNONYMOUS_CODING Or33b UPSTREAM Or33c
3L	7726957	3L_7726957_SNP [dm3] 3L_7733857_SNP [dm6]	C	T	1.992e^-4	0.735	INTRON CG32373 & 1 other
3L	5486322	3L_5486322_SNP [dm3] 3L_5493222_SNP [dm6]	C	T	2.001e^-4	0.735	DOWNSTREAM CR44520 INTERGENIC
X	5364576	X_5364576_DEL [dm3] X_5470543_DEL [dm6]	CATATATGTATC...	C	2.002e^-4	0.735	INTRON SPR
3R	20977457	3R_20977457_SNP [dm3] 3R_25151735_SNP [dm6]	C	A	2.006e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18590870	3L_18590870_DEL [dm3] 3L_18597770_DEL [dm6]	ATATAT	C	2.009e^-4	0.735	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
3L	1258531	3L_1258531_SNP [dm3] 3L_1258531_SNP [dm6]	C	T	2.013e^-4	0.735	INTRON CG9134
3R	26350057	3R_26350057_SNP [dm3] 3R_30524335_SNP [dm6]	C	T	2.030e^-4	0.735	INTRON jdp
2R	12665648	2R_12665648_SNP [dm3] 2R_16778143_SNP [dm6]	C	T	2.030e^-4	0.735	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1320120	3L_1320120_INS [dm3] 3L_1320120_INS [dm6]	T	TT	2.035e^-4	0.735	UPSTREAM Myo61F INTRON Myo61F
3L	1137741	3L_1137741_SNP [dm3] 3L_1137741_SNP [dm6]	G	A	2.041e^-4	0.735	INTERGENIC
3L	11623088	3L_11623088_SNP [dm3] 3L_11629988_SNP [dm6]	C	A	2.045e^-4	0.735	UTR_3_PRIME CG18815 DOWNSTREAM mir-3642 INTRON CG18815
3L	18948251	3L_18948251_SNP [dm3] 3L_18955151_SNP [dm6]	T	C	2.053e^-4	0.735	INTRON CG6836
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	2.060e^-4	0.735	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	20808250	2L_20808250_SNP [dm3] 2L_20808250_SNP [dm6]	C	T	2.068e^-4	0.735	INTRON CG9328
2R	19163181	2R_19163181_SNP [dm3] 2R_23275658_SNP [dm6]	A	G	2.083e^-4	0.735	UPSTREAM ord INTERGENIC
3R	25807382	3R_25807382_SNP [dm3] 3R_29981660_SNP [dm6]	A	C	2.086e^-4	0.735	INTERGENIC
2R	9766697	2R_9766697_SNP [dm3] 2R_13879192_SNP [dm6]	A	G	2.097e^-4	0.735	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1137698	3L_1137698_SNP [dm3] 3L_1137698_SNP [dm6]	C	G	2.099e^-4	0.735	INTERGENIC
3L	6975633	3L_6975633_SNP [dm3] 3L_6982533_SNP [dm6]	C	T	2.099e^-4	0.735	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15826494	3R_15826494_DEL [dm3] 3R_20000772_DEL [dm6]	GAAACAGATCTTAATGCTAG...	G	2.101e^-4	0.735	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	6962651	X_6962651_SNP [dm3] X_7068618_SNP [dm6]	T	G	2.105e^-4	0.735	UPSTREAM CG4607 INTERGENIC
3R	23209746	3R_23209746_SNP [dm3] 3R_27384024_SNP [dm6]	C	A	2.109e^-4	0.735	INTRON side
3R	13440869	3R_13440869_SNP [dm3] 3R_17615147_SNP [dm6]	A	T	2.112e^-4	0.735	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	408618	2R_408618_DEL [dm3] 2R_4521113_DEL [dm6]	TATAGAGAA	T	2.120e^-4	0.735	INTERGENIC
2R	480895	2R_480895_SNP [dm3] 2R_4593390_SNP [dm6]	A	G	2.120e^-4	0.735	INTERGENIC	transposable element FlyBase
2R	13992683	2R_13992683_SNP [dm3] 2R_18105178_SNP [dm6]	A	G	2.120e^-4	0.735	SYNONYMOUS_CODING CG5756
3R	25775002	3R_25775002_SNP [dm3] 3R_29949280_SNP [dm6]	C	T	2.125e^-4	0.735	INTERGENIC
3R	7408314	3R_7408314_SNP [dm3] 3R_11582592_SNP [dm6]	C	T	2.134e^-4	0.735	UPSTREAM wkd INTRON wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	4815432	3R_4815432_DEL [dm3] 3R_8989710_DEL [dm6]	AAGCGGCAGT	A	2.135e^-4	0.735	CODON_DELETION CG11970 DOWNSTREAM E_var_3-9
3L	6433427	3L_6433427_SNP [dm3] 3L_6440327_SNP [dm6]	G	A	2.142e^-4	0.735	INTRON CG42747
3L	1254188	3L_1254188_SNP [dm3] 3L_1254188_SNP [dm6]	G	C	2.143e^-4	0.735	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
X	6962746	X_6962746_SNP [dm3] X_7068713_SNP [dm6]	G	T	2.145e^-4	0.735	UPSTREAM CG4607 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14762742	2R_14762742_SNP [dm3] 2R_18875237_SNP [dm6]	A	C	2.151e^-4	0.735	INTERGENIC
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	2.151e^-4	0.735	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
X	20631796	X_20631796_SNP [dm3] X_20760769_SNP [dm6]	C	A	2.152e^-4	0.735	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	19515826	X_19515826_INS [dm3] X_19621793_INS [dm6]	C	CTGTGG	2.153e^-4	0.735	UTR_3_PRIME NAA20 UPSTREAM CG14221 INTRON NAA20
X	20631456	X_20631456_SNP [dm3] X_20760429_SNP [dm6]	T	C	2.162e^-4	0.735	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	20631799	X_20631799_SNP [dm3] X_20760772_SNP [dm6]	C	G	2.162e^-4	0.735	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	20631810	X_20631810_SNP [dm3] X_20760783_SNP [dm6]	T	A	2.162e^-4	0.735	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	20631816	X_20631816_SNP [dm3] X_20760789_SNP [dm6]	G	T	2.162e^-4	0.735	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11557077	2L_11557077_SNP [dm3] 2L_11557077_SNP [dm6]	G	C	2.168e^-4	0.735	INTERGENIC
X	5899914	X_5899914_DEL [dm3] X_6005881_DEL [dm6]	ATATC	G	2.170e^-4	0.735	DOWNSTREAM CR44498 INTERGENIC
3R	25776843	3R_25776843_SNP [dm3] 3R_29951121_SNP [dm6]	A	C	2.171e^-4	0.735	UTR_3_PRIME TkR99D
X	20219055	X_20219055_SNP [dm3] X_20348028_SNP [dm6]	C	G	2.176e^-4	0.735	INTERGENIC
2L	530392	2L_530392_SNP [dm3] 2L_530392_SNP [dm6]	G	C	2.182e^-4	0.735	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	19506080	2R_19506080_SNP [dm3] 2R_23618557_SNP [dm6]	A	C	2.183e^-4	0.735	INTERGENIC
3R	26302752	3R_26302752_INS [dm3] 3R_30477030_INS [dm6]	A	ACCAGCA	2.185e^-4	0.735	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13805834	2R_13805834_SNP [dm3] 2R_17918329_SNP [dm6]	C	A	2.188e^-4	0.735	INTRON Elk
3L	9986620	3L_9986620_SNP [dm3] 3L_9993520_SNP [dm6]	A	G	2.197e^-4	0.735	INTRON dpr6
2R	3947817	2R_3947817_SNP [dm3] 2R_8060312_SNP [dm6]	G	T	2.199e^-4	0.735	INTRON CG12769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	13076794	2L_13076794_SNP [dm3] 2L_13076794_SNP [dm6]	G	T	2.203e^-4	0.735	INTERGENIC
2R	14351068	2R_14351068_SNP [dm3] 2R_18463563_SNP [dm6]	T	C	2.212e^-4	0.735	INTRON CG30116
3L	3848700	3L_3848700_SNP [dm3] 3L_3848700_SNP [dm6]	C	A	2.213e^-4	0.735	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6754317	3L_6754317_SNP [dm3] 3L_6761217_SNP [dm6]	G	C	2.214e^-4	0.735	UPSTREAM CG32392 INTRON CG32392
3R	20844311	3R_20844311_SNP [dm3] 3R_25018589_SNP [dm6]	C	T	2.215e^-4	0.735	SYNONYMOUS_CODING tnc
3R	25768239	3R_25768239_SNP [dm3] 3R_29942517_SNP [dm6]	T	A	2.219e^-4	0.735	INTRON CG15523
3R	20594692	3R_20594692_SNP [dm3] 3R_24768970_SNP [dm6]	A	T	2.219e^-4	0.735	UPSTREAM CG13631 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25775044	3R_25775044_SNP [dm3] 3R_29949322_SNP [dm6]	A	G	2.221e^-4	0.735	INTERGENIC
3L	6006332	3L_6006332_SNP [dm3] 3L_6013232_SNP [dm6]	G	A	2.222e^-4	0.735	INTRON PVRAP
3R	6201618	3R_6201618_SNP [dm3] 3R_10375896_SNP [dm6]	C	G	2.224e^-4	0.735	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25767525	3R_25767525_SNP [dm3] 3R_29941803_SNP [dm6]	C	G	2.225e^-4	0.735	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	406223	2R_406223_SNP [dm3] 2R_4518718_SNP [dm6]	C	G	2.229e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4028513	3L_4028513_SNP [dm3] 3L_4028513_SNP [dm6]	C	A	2.234e^-4	0.735	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14382005	3L_14382005_SNP [dm3] 3L_14388905_SNP [dm6]	T	C	2.239e^-4	0.735	INTERGENIC
3L	1025987	3L_1025987_SNP [dm3] 3L_1025987_SNP [dm6]	C	T	2.246e^-4	0.735	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6456410	3R_6456410_SNP [dm3] 3R_10630688_SNP [dm6]	G	A	2.250e^-4	0.735	INTRON hth	TF binding site mE1_TFBS_cad
X	15572400	X_15572400_SNP [dm3] X_15678367_SNP [dm6]	C	T	2.257e^-4	0.735	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7460981	3L_7460981_DEL [dm3] 3L_7467881_DEL [dm6]	AT	A	2.268e^-4	0.735	INTRON Tsp66A & 2 others	TF binding site BDTNP1_TFBS_twi
3R	19593350	3R_19593350_SNP [dm3] 3R_23767628_SNP [dm6]	A	C	2.272e^-4	0.735	UPSTREAM CG10375 & 1 other DOWNSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18841127	3L_18841127_SNP [dm3] 3L_18848027_SNP [dm6]	C	G	2.272e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	13778949	3R_13778949_SNP [dm3] 3R_17953227_SNP [dm6]	G	A	2.274e^-4	0.735	INTRON cpo	TF binding site mE1_TFBS_cad
3L	13060234	3L_13060234_SNP [dm3] 3L_13067134_SNP [dm6]	C	T	2.280e^-4	0.735	INTERGENIC
3L	5351167	3L_5351167_SNP [dm3] 3L_5358067_SNP [dm6]	C	T	2.284e^-4	0.735	SYNONYMOUS_CODING Klp64D	TF binding site mE1_TFBS_sens
3R	15278004	3R_15278004_SNP [dm3] 3R_19452282_SNP [dm6]	G	T	2.288e^-4	0.735	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	17809277	X_17809277_DEL [dm3] X_17915244_DEL [dm6]	TT	T	2.289e^-4	0.735	INTRON CG6847
X	9418986	X_9418986_SNP [dm3] X_9524953_SNP [dm6]	G	A	2.295e^-4	0.735	INTRON CG32700
3L	8864775	3L_8864775_SNP [dm3] 3L_8871675_SNP [dm6]	T	A	2.297e^-4	0.735	INTRON dally	TF binding site BDTNP1_TFBS_twi
3R	16018126	3R_16018126_SNP [dm3] 3R_20192404_SNP [dm6]	T	C	2.298e^-4	0.735	INTERGENIC
2R	18652582	2R_18652582_DEL [dm3] 2R_22765077_DEL [dm6]	AGTA	CAC	2.306e^-4	0.735	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
3L	20630150	3L_20630150_SNP [dm3] 3L_20637050_SNP [dm6]	T	G	2.308e^-4	0.735	UPSTREAM CG13251 INTERGENIC
3L	5231686	3L_5231686_DEL [dm3] 3L_5238586_DEL [dm6]	GCC	G	2.310e^-4	0.735	INTRON shep
3L	5231689	3L_5231689_DEL [dm3] 3L_5238589_DEL [dm6]	GTAAAAATGCGA...	G	2.310e^-4	0.735	INTRON shep
2R	18193450	2R_18193450_SNP [dm3] 2R_22305945_SNP [dm6]	T	A	2.312e^-4	0.735	INTRON wdp
3L	3269880	3L_3269880_SNP [dm3] 3L_3269880_SNP [dm6]	G	A	2.313e^-4	0.735	DOWNSTREAM CG34265 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15572399	X_15572399_SNP [dm3] X_15678366_SNP [dm6]	G	T	2.315e^-4	0.735	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15452358	X_15452358_SNP [dm3] X_15558325_SNP [dm6]	T	G	2.315e^-4	0.735	INTERGENIC
3R	13440729	3R_13440729_SNP [dm3] 3R_17615007_SNP [dm6]	A	G	2.316e^-4	0.735	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn
2L	8254318	2L_8254318_SNP [dm3] 2L_8254318_SNP [dm6]	C	G	2.324e^-4	0.735	INTRON CG8086	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1237933	3L_1237933_SNP [dm3] 3L_1237933_SNP [dm6]	G	A	2.326e^-4	0.735	SYNONYMOUS_CODING CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	4141276	2L_4141276_SNP [dm3] 2L_4141276_SNP [dm6]	A	T	2.326e^-4	0.735	INTERGENIC
3R	9951448	3R_9951448_SNP [dm3] 3R_14125726_SNP [dm6]	C	T	2.328e^-4	0.735	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12665592	2R_12665592_DEL [dm3] 2R_16778087_DEL [dm6]	CGGA	G	2.328e^-4	0.735	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19529291	3R_19529291_SNP [dm3] 3R_23703569_SNP [dm6]	A	G	2.331e^-4	0.735	SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148	TF binding site mE1_TFBS_sens
2L	8956855	2L_8956855_SNP [dm3] 2L_8956855_SNP [dm6]	A	T	2.334e^-4	0.735	INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	7456493	3L_7456493_SNP [dm3] 3L_7463393_SNP [dm6]	C	T	2.338e^-4	0.735	INTERGENIC
3R	17289170	3R_17289170_SNP [dm3] 3R_21463448_SNP [dm6]	T	G	2.343e^-4	0.735	INTERGENIC
2L	17804275	2L_17804275_SNP [dm3] 2L_17804275_SNP [dm6]	G	A	2.347e^-4	0.735	INTRON CadN2
3L	21829990	3L_21829990_SNP [dm3] 3L_21836890_SNP [dm6]	C	A	2.347e^-4	0.735	UTR_3_PRIME P5CDh1 DOWNSTREAM Nopp140
X	20631802	X_20631802_SNP [dm3] X_20760775_SNP [dm6]	C	G	2.352e^-4	0.735	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15572350	X_15572350_INS [dm3] X_15678317_INS [dm6]	A	ACAAATTATGGAAGATTTGA...	2.354e^-4	0.735	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7269868	3L_7269868_SNP [dm3] 3L_7276768_SNP [dm6]	C	T	2.355e^-4	0.735	INTRON unc-13-4A
2R	1383651	2R_1383651_DEL [dm3] 2R_5496146_DEL [dm6]	TT	T	2.359e^-4	0.735	UPSTREAM CG30438 & 1 other INTERGENIC
X	15868018	X_15868018_INS [dm3] X_15973985_INS [dm6]	A	ATATATATAT	2.362e^-4	0.735	UPSTREAM mmd & 1 other DOWNSTREAM CR45527 INTERGENIC
X	15868021	X_15868021_INS [dm3] X_15973988_INS [dm6]	A	ATAT	2.362e^-4	0.735	UPSTREAM mmd & 1 other DOWNSTREAM CR45527 INTERGENIC
2L	13641380	2L_13641380_SNP [dm3] 2L_13641380_SNP [dm6]	C	T	2.380e^-4	0.74	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5883246	3R_5883246_SNP [dm3] 3R_10057524_SNP [dm6]	A	G	2.387e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11900369	2L_11900369_SNP [dm3] 2L_11900369_SNP [dm6]	T	C	2.399e^-4	0.743	INTRON Pde1c
3R	20533219	3R_20533219_SNP [dm3] 3R_24707497_SNP [dm6]	T	G	2.402e^-4	0.743	UTR_3_PRIME slo
3L	10620467	3L_10620467_SNP [dm3] 3L_10627367_SNP [dm6]	A	G	2.406e^-4	0.743	NON_SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
2R	12665608	2R_12665608_SNP [dm3] 2R_16778103_SNP [dm6]	A	G	2.413e^-4	0.743	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5263290	2L_5263290_SNP [dm3] 2L_5263290_SNP [dm6]	G	T	2.418e^-4	0.743	UPSTREAM Cyp4ac1 INTRON tkv
2L	7056012	2L_7056012_SNP [dm3] 2L_7056012_SNP [dm6]	A	T	2.418e^-4	0.743	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	16054824	X_16054824_SNP [dm3] X_16160791_SNP [dm6]	C	T	2.424e^-4	0.743	INTERGENIC
2R	12666888	2R_12666888_SNP [dm3] 2R_16779383_SNP [dm6]	T	C	2.426e^-4	0.743	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
3L	6562621	3L_6562621_SNP [dm3] 3L_6569521_SNP [dm6]	A	T	2.438e^-4	0.743	INTRON CG18769 & 1 other
2L	10004348	2L_10004348_SNP [dm3] 2L_10004348_SNP [dm6]	G	A	2.438e^-4	0.743	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16113462	2R_16113462_SNP [dm3] 2R_20225957_SNP [dm6]	A	T	2.439e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15277924	3R_15277924_SNP [dm3] 3R_19452202_SNP [dm6]	G	A	2.447e^-4	0.744	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	11886523	3L_11886523_SNP [dm3] 3L_11893423_SNP [dm6]	G	C	2.451e^-4	0.744	INTRON CG44837
X	15572363	X_15572363_SNP [dm3] X_15678330_SNP [dm6]	A	T	2.453e^-4	0.744	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13905970	X_13905970_SNP [dm3] X_14011937_SNP [dm6]	G	A	2.460e^-4	0.744	INTERGENIC
3L	18247265	3L_18247265_SNP [dm3] 3L_18254165_SNP [dm6]	A	C	2.462e^-4	0.744	INTERGENIC
X	8603807	X_8603807_SNP [dm3] X_8709774_SNP [dm6]	A	G	2.467e^-4	0.744	UTR_5_PRIME Hexo2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16337476	3R_16337476_SNP [dm3] 3R_20511754_SNP [dm6]	G	A	2.471e^-4	0.744	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15572348	X_15572348_SNP [dm3] X_15678315_SNP [dm6]	C	T	2.480e^-4	0.746	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2002183	3L_2002183_DEL [dm3] 3L_2002183_DEL [dm6]	TA	T	2.488e^-4	0.747	DOWNSTREAM CG42841 INTERGENIC
X	19358077	X_19358077_SNP [dm3] X_19464044_SNP [dm6]	C	G	2.496e^-4	0.747	INTRON kek5
3L	16886831	3L_16886831_SNP [dm3] 3L_16893731_SNP [dm6]	G	A	2.499e^-4	0.747	INTRON Lmpt
3L	7137376	3L_7137376_SNP [dm3] 3L_7144276_SNP [dm6]	G	A	2.501e^-4	0.747	SYNONYMOUS_CODING corn UTR_3_PRIME corn DOWNSTREAM corn
2L	5808173	2L_5808173_SNP [dm3] 2L_5808173_SNP [dm6]	T	C	2.503e^-4	0.747	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2363074	X_2363074_SNP [dm3] X_2469041_SNP [dm6]	C	G	2.518e^-4	0.75	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8567158	2L_8567158_SNP [dm3] 2L_8567158_SNP [dm6]	C	A	2.533e^-4	0.753	INTRON Sema-1a
2R	13992337	2R_13992337_SNP [dm3] 2R_18104832_SNP [dm6]	G	A	2.538e^-4	0.753	SYNONYMOUS_CODING CG5756
2L	20795052	2L_20795052_SNP [dm3] 2L_20795052_SNP [dm6]	G	A	2.545e^-4	0.753	UPSTREAM vari INTRON vari EXON CR44146
2R	13997943	2R_13997943_SNP [dm3] 2R_18110438_SNP [dm6]	T	A	2.546e^-4	0.753	UTR_3_PRIME CG34196
2R	13997980	2R_13997980_SNP [dm3] 2R_18110475_SNP [dm6]	C	T	2.546e^-4	0.753	UTR_3_PRIME CG34196
3L	10620588	3L_10620588_DEL [dm3] 3L_10627488_DEL [dm6]	AG	A	2.555e^-4	0.753	DOWNSTREAM CG14151 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	25797750	3R_25797750_SNP [dm3] 3R_29972028_SNP [dm6]	C	G	2.559e^-4	0.753	INTERGENIC
3L	15607051	3L_15607051_SNP [dm3] 3L_15613951_SNP [dm6]	G	A	2.559e^-4	0.753	SYNONYMOUS_CODING comm3
2L	5806417	2L_5806417_SNP [dm3] 2L_5806417_SNP [dm6]	T	C	2.568e^-4	0.754	INTRON CG11034
3R	13440840	3R_13440840_SNP [dm3] 3R_17615118_SNP [dm6]	T	G	2.578e^-4	0.754	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	8601817	X_8601817_SNP [dm3] X_8707784_SNP [dm6]	A	G	2.579e^-4	0.754	UPSTREAM CR44508 EXON CR44507
3L	17498938	3L_17498938_SNP [dm3] 3L_17505838_SNP [dm6]	A	G	2.583e^-4	0.754	INTRON Oatp74D
2R	12665708	2R_12665708_SNP [dm3] 2R_16778203_SNP [dm6]	T	C	2.587e^-4	0.754	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1423471	3L_1423471_SNP [dm3] 3L_1423471_SNP [dm6]	C	A	2.590e^-4	0.754	UTR_5_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9951381	3R_9951381_SNP [dm3] 3R_14125659_SNP [dm6]	C	T	2.598e^-4	0.754	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	2.602e^-4	0.754	SYNONYMOUS_CODING Plod
X	10883880	X_10883880_SNP [dm3] X_10989847_SNP [dm6]	A	C	2.606e^-4	0.754	INTRON CG42339
3R	11809305	3R_11809305_SNP [dm3] 3R_15983583_SNP [dm6]	C	A	2.611e^-4	0.754	DOWNSTREAM Hel89B INTERGENIC
2L	13848193	2L_13848193_SNP [dm3] 2L_13848193_SNP [dm6]	G	A	2.614e^-4	0.754	DOWNSTREAM CG7916 INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8555280	X_8555280_SNP [dm3] X_8661247_SNP [dm6]	C	T	2.628e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20681178	X_20681178_SNP [dm3] X_20810151_SNP [dm6]	T	A	2.634e^-4	0.754	INTRON shakB
3R	19487859	3R_19487859_SNP [dm3] 3R_23662137_SNP [dm6]	G	A	2.637e^-4	0.754	INTRON CG31145
3L	1137712	3L_1137712_SNP [dm3] 3L_1137712_SNP [dm6]	A	G	2.638e^-4	0.754	INTERGENIC
3R	17194175	3R_17194175_SNP [dm3] 3R_21368453_SNP [dm6]	C	A	2.644e^-4	0.754	SYNONYMOUS_CODING pre-mod_mdg4_-V UTR_5_PRIME pre-mod_mdg4_-U UTR_3_PRIME pre-mod_mdg4_-X DOWNSTREAM pre-mod_mdg4_-Y & 3 others INTRON mod_mdg4_
3R	18331703	3R_18331703_SNP [dm3] 3R_22505981_SNP [dm6]	C	T	2.644e^-4	0.754	INTRON Octbeta1R
3R	9951489	3R_9951489_SNP [dm3] 3R_14125767_SNP [dm6]	A	G	2.645e^-4	0.754	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3357550	3L_3357550_SNP [dm3] 3L_3357550_SNP [dm6]	G	A	2.646e^-4	0.754	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	16018507	3L_16018507_SNP [dm3] 3L_16025407_SNP [dm6]	C	T	2.652e^-4	0.754	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13076692	2R_13076692_SNP [dm3] 2R_17189187_SNP [dm6]	T	A	2.669e^-4	0.754	UPSTREAM CR45323 & 1 other INTERGENIC
2L	15916363	2L_15916363_SNP [dm3] 2L_15916363_SNP [dm6]	A	C	2.672e^-4	0.754	UPSTREAM CG13244 INTRON beat-Ib
3L	18882253	3L_18882253_SNP [dm3] 3L_18889153_SNP [dm6]	A	C	2.674e^-4	0.754	INTRON CG3961
2R	8931505	2R_8931505_SNP [dm3] 2R_13044000_SNP [dm6]	T	C	2.674e^-4	0.754	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
X	11570552	X_11570552_SNP [dm3] X_11676519_SNP [dm6]	C	A	2.676e^-4	0.754	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	7890563	3L_7890563_SNP [dm3] 3L_7897463_SNP [dm6]	C	T	2.678e^-4	0.754	SYNONYMOUS_CODING pbl
3R	9361833	3R_9361833_SNP [dm3] 3R_13536111_SNP [dm6]	A	C	2.687e^-4	0.754	INTERGENIC
X	11002703	X_11002703_SNP [dm3] X_11108670_SNP [dm6]	T	G	2.687e^-4	0.754	DOWNSTREAM CG42249 INTRON Hsp60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	15306473	3R_15306473_SNP [dm3] 3R_19480751_SNP [dm6]	G	A	2.691e^-4	0.754	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_sens
3R	15306474	3R_15306474_SNP [dm3] 3R_19480752_SNP [dm6]	C	T	2.691e^-4	0.754	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_sens
2L	13567719	2L_13567719_SNP [dm3] 2L_13567719_SNP [dm6]	T	C	2.691e^-4	0.754	INTRON kuz
2R	14309158	2R_14309158_SNP [dm3] 2R_18421653_SNP [dm6]	G	A	2.693e^-4	0.754	DOWNSTREAM Dp1 INTRON CG5174	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	2.699e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	2.706e^-4	0.754	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
2R	7025224	2R_7025224_SNP [dm3] 2R_11137719_SNP [dm6]	G	C	2.712e^-4	0.754	INTRON BBS4
3R	17840288	3R_17840288_SNP [dm3] 3R_22014566_SNP [dm6]	G	T	2.714e^-4	0.754	UPSTREAM CG6332 DOWNSTREAM Eip93F INTERGENIC
3R	6249228	3R_6249228_SNP [dm3] 3R_10423506_SNP [dm6]	T	A	2.716e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7325374	3L_7325374_SNP [dm3] 3L_7332274_SNP [dm6]	T	C	2.717e^-4	0.754	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18664958	2R_18664958_SNP [dm3] 2R_22777453_SNP [dm6]	T	C	2.747e^-4	0.758	INTRON CG42260
3R	25767876	3R_25767876_SNP [dm3] 3R_29942154_SNP [dm6]	G	T	2.757e^-4	0.758	SYNONYMOUS_CODING CG15523
2R	8931506	2R_8931506_SNP [dm3] 2R_13044001_SNP [dm6]	G	C	2.758e^-4	0.758	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	9614058	3R_9614058_SNP [dm3] 3R_13788336_SNP [dm6]	A	T	2.759e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4745545	3R_4745545_SNP [dm3] 3R_8919823_SNP [dm6]	C	T	2.759e^-4	0.758	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20659294	X_20659294_SNP [dm3] X_20788267_SNP [dm6]	G	C	2.760e^-4	0.758	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl
X	14518555	X_14518555_INS [dm3] X_14624522_INS [dm6]	G	GTGGGT	2.776e^-4	0.758	INTRON NetA
2L	1006707	2L_1006707_SNP [dm3] 2L_1006707_SNP [dm6]	T	C	2.778e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	25767513	3R_25767513_SNP [dm3] 3R_29941791_SNP [dm6]	T	A	2.779e^-4	0.758	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	5231661	3L_5231661_SNP [dm3] 3L_5238561_SNP [dm6]	C	T	2.780e^-4	0.758	INTRON shep
3L	18879544	3L_18879544_SNP [dm3] 3L_18886444_SNP [dm6]	A	G	2.782e^-4	0.758	INTRON CG3961
3R	14042647	3R_14042647_SNP [dm3] 3R_18216925_SNP [dm6]	A	T	2.788e^-4	0.758	INTRON CG14314	TF binding site mE1_TFBS_cad
3L	7961247	3L_7961247_SNP [dm3] 3L_7968147_SNP [dm6]	T	C	2.799e^-4	0.758	INTERGENIC
2R	16985709	2R_16985709_SNP [dm3] 2R_21098204_SNP [dm6]	C	A	2.800e^-4	0.758	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5421918	3L_5421918_SNP [dm3] 3L_5428818_SNP [dm6]	A	G	2.820e^-4	0.758	INTRON CG34391
X	6962754	X_6962754_SNP [dm3] X_7068721_SNP [dm6]	T	A	2.821e^-4	0.758	UPSTREAM CG4607 INTERGENIC	TF binding site mE1_TFBS_inv
2L	7014069	2L_7014069_SNP [dm3] 2L_7014069_SNP [dm6]	G	C	2.823e^-4	0.758	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3R	25799521	3R_25799521_SNP [dm3] 3R_29973799_SNP [dm6]	A	T	2.830e^-4	0.758	INTERGENIC
2R	19617053	2R_19617053_SNP [dm3] 2R_23729530_SNP [dm6]	C	T	2.830e^-4	0.758	INTRON Sesn
2R	6233296	2R_6233296_SNP [dm3] 2R_10345791_SNP [dm6]	A	G	2.835e^-4	0.758	INTRON CG42732
3R	20843870	3R_20843870_SNP [dm3] 3R_25018148_SNP [dm6]	G	T	2.849e^-4	0.758	SYNONYMOUS_CODING tnc
2R	7904417	2R_7904417_INS [dm3] 2R_12016912_INS [dm6]	T	TT	2.851e^-4	0.758	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25766329	3R_25766329_SNP [dm3] 3R_29940607_SNP [dm6]	G	A	2.854e^-4	0.758	INTRON CG15523
3R	25763455	3R_25763455_SNP [dm3] 3R_29937733_SNP [dm6]	G	A	2.855e^-4	0.758	SYNONYMOUS_CODING CG15523
3L	11367920	3L_11367920_SNP [dm3] 3L_11374820_SNP [dm6]	G	A	2.859e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	9736463	3R_9736463_SNP [dm3] 3R_13910741_SNP [dm6]	C	T	2.879e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5643974	3L_5643974_SNP [dm3] 3L_5650874_SNP [dm6]	G	A	2.880e^-4	0.758	UTR_3_PRIME Blimp-1
2L	3135555	2L_3135555_SNP [dm3] 2L_3135555_SNP [dm6]	C	G	2.885e^-4	0.758	INTRON toc
2R	16363130	2R_16363130_SNP [dm3] 2R_20475625_SNP [dm6]	G	T	2.892e^-4	0.758	INTRON CG12484
3L	7203481	3L_7203481_SNP [dm3] 3L_7210381_SNP [dm6]	T	C	2.894e^-4	0.758	INTERGENIC
3L	11374271	3L_11374271_SNP [dm3] 3L_11381171_SNP [dm6]	C	A	2.896e^-4	0.758	INTERGENIC
2L	5771328	2L_5771328_SNP [dm3] 2L_5771328_SNP [dm6]	C	A	2.897e^-4	0.758	DOWNSTREAM CR31912 INTRON CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3908621	3L_3908621_SNP [dm3] 3L_3908621_SNP [dm6]	T	A	2.900e^-4	0.758	DOWNSTREAM ida INTRON mge
3L	3794054	3L_3794054_SNP [dm3] 3L_3794054_SNP [dm6]	T	A	2.902e^-4	0.758	INTRON CG32264
2L	3985198	2L_3985198_SNP [dm3] 2L_3985198_SNP [dm6]	T	C	2.912e^-4	0.758	INTRON fred
X	16887060	X_16887060_SNP [dm3] X_16993027_SNP [dm6]	C	T	2.916e^-4	0.758	INTRON CG45002
2L	19000581	2L_19000581_SNP [dm3] 2L_19000581_SNP [dm6]	A	C	2.916e^-4	0.758	NON_SYNONYMOUS_CODING CG31792	TF binding site mE1_TFBS_sens
3L	1026041	3L_1026041_SNP [dm3] 3L_1026041_SNP [dm6]	C	T	2.919e^-4	0.758	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20844165	3R_20844165_SNP [dm3] 3R_25018443_SNP [dm6]	G	A	2.919e^-4	0.758	NON_SYNONYMOUS_CODING tnc
2R	18023407	2R_18023407_SNP [dm3] 2R_22135902_SNP [dm6]	C	A	2.927e^-4	0.758	INTERGENIC
X	11570554	X_11570554_SNP [dm3] X_11676521_SNP [dm6]	C	A	2.936e^-4	0.758	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8125249	2R_8125249_SNP [dm3] 2R_12237744_SNP [dm6]	C	T	2.937e^-4	0.758	INTERGENIC
2R	5234646	2R_5234646_SNP [dm3] 2R_9347141_SNP [dm6]	G	A	2.938e^-4	0.758	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
X	8604175	X_8604175_SNP [dm3] X_8710142_SNP [dm6]	A	T	2.948e^-4	0.758	INTRON Hexo2	TF binding site BDTNP1_TFBS_dl
3L	1249970	3L_1249970_SNP [dm3] 3L_1249970_SNP [dm6]	C	A	2.952e^-4	0.758	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129
3R	24570900	3R_24570900_SNP [dm3] 3R_28745178_SNP [dm6]	T	C	2.954e^-4	0.758	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15826637	3R_15826637_SNP [dm3] 3R_20000915_SNP [dm6]	T	C	2.957e^-4	0.758	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	6678612	X_6678612_SNP [dm3] X_6784579_SNP [dm6]	G	A	2.960e^-4	0.758	INTRON C3G
2L	9342519	2L_9342519_SNP [dm3] 2L_9342519_SNP [dm6]	T	G	2.962e^-4	0.758	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
X	3731341	X_3731341_SNP [dm3] X_3837308_SNP [dm6]	C	T	2.963e^-4	0.758	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2561779	X_2561779_SNP [dm3] X_2667746_SNP [dm6]	G	A	2.966e^-4	0.758	UPSTREAM sgg INTRON sgg
X	8603536	X_8603536_SNP [dm3] X_8709503_SNP [dm6]	A	G	2.966e^-4	0.758	UPSTREAM Hexo2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4619384	3R_4619384_SNP [dm3] 3R_8793662_SNP [dm6]	A	G	2.968e^-4	0.758	INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA
3R	16414814	3R_16414814_SNP [dm3] 3R_20589092_SNP [dm6]	T	C	2.978e^-4	0.758	SYNONYMOUS_CODING Srp72 UPSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18649689	2L_18649689_SNP [dm3] 2L_18649689_SNP [dm6]	A	G	2.986e^-4	0.758	INTRON MESR3
3L	1891244	3L_1891244_SNP [dm3] 3L_1891244_SNP [dm6]	G	A	2.987e^-4	0.758	UTR_3_PRIME Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	21788045	2L_21788045_SNP [dm3] 2L_21788045_SNP [dm6]	C	A	2.997e^-4	0.758	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	11649656	2R_11649656_SNP [dm3] 2R_15762151_SNP [dm6]	A	G	2.998e^-4	0.758	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	15572334	X_15572334_SNP [dm3] X_15678301_SNP [dm6]	G	A	2.998e^-4	0.758	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4384423	2L_4384423_SNP [dm3] 2L_4384423_SNP [dm6]	T	C	2.998e^-4	0.758	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
2R	11649646	2R_11649646_SNP [dm3] 2R_15762141_SNP [dm6]	C	T	3.004e^-4	0.758	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	13641515	2L_13641515_SNP [dm3] 2L_13641515_SNP [dm6]	T	C	3.008e^-4	0.758	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl
3R	25770266	3R_25770266_SNP [dm3] 3R_29944544_SNP [dm6]	G	T	3.010e^-4	0.758	INTRON CG15523
2R	16595456	2R_16595456_SNP [dm3] 2R_20707951_SNP [dm6]	C	A	3.014e^-4	0.758	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15679317	2R_15679317_SNP [dm3] 2R_19791812_SNP [dm6]	A	C	3.019e^-4	0.758	INTERGENIC
3R	25788609	3R_25788609_SNP [dm3] 3R_29962887_SNP [dm6]	C	T	3.022e^-4	0.758	INTRON TkR99D
2L	5562109	2L_5562109_SNP [dm3] 2L_5562109_SNP [dm6]	T	C	3.028e^-4	0.758	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	6248740	2R_6248740_SNP [dm3] 2R_10361235_SNP [dm6]	G	A	3.034e^-4	0.758	UPSTREAM Gr47a DOWNSTREAM CG43396 INTRON CG42732
2R	19320833	2R_19320833_SNP [dm3] 2R_23433310_SNP [dm6]	C	T	3.035e^-4	0.758	UTR_5_PRIME CG9815
2L	839340	2L_839340_SNP [dm3] 2L_839340_SNP [dm6]	G	C	3.036e^-4	0.758	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10472401	3L_10472401_SNP [dm3] 3L_10479301_SNP [dm6]	A	G	3.041e^-4	0.758	INTERGENIC
3L	10472402	3L_10472402_SNP [dm3] 3L_10479302_SNP [dm6]	A	T	3.041e^-4	0.758	INTERGENIC
3L	10472415	3L_10472415_SNP [dm3] 3L_10479315_SNP [dm6]	T	A	3.041e^-4	0.758	INTERGENIC
3L	8543760	3L_8543760_SNP [dm3] 3L_8550660_SNP [dm6]	T	C	3.052e^-4	0.758	INTRON rhea
2R	6919702	2R_6919702_SNP [dm3] 2R_11032197_SNP [dm6]	T	C	3.052e^-4	0.758	INTRON luna
2L	9330584	2L_9330584_SNP [dm3] 2L_9330584_SNP [dm6]	G	T	3.054e^-4	0.758	UPSTREAM Cks30A DOWNSTREAM CG17005 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	12534460	2R_12534460_SNP [dm3] 2R_16646955_SNP [dm6]	G	C	3.056e^-4	0.758	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8983661	3L_8983661_SNP [dm3] 3L_8990561_SNP [dm6]	C	G	3.057e^-4	0.758	UTR_3_PRIME smg UPSTREAM CG5280
2R	12238037	2R_12238037_SNP [dm3] 2R_16350532_SNP [dm6]	T	G	3.057e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3356911	3L_3356911_SNP [dm3] 3L_3356911_SNP [dm6]	T	C	3.062e^-4	0.758	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
X	20402820	X_20402820_SNP [dm3] X_20531793_SNP [dm6]	T	A	3.064e^-4	0.758	INTERGENIC
3R	25768158	3R_25768158_SNP [dm3] 3R_29942436_SNP [dm6]	A	G	3.070e^-4	0.758	SYNONYMOUS_CODING CG15523
3L	1318061	3L_1318061_SNP [dm3] 3L_1318061_SNP [dm6]	T	G	3.074e^-4	0.758	UTR_3_PRIME CG9153 UPSTREAM Myo61F
3L	5994148	3L_5994148_SNP [dm3] 3L_6001048_SNP [dm6]	C	G	3.081e^-4	0.758	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14103601	3L_14103601_SNP [dm3] 3L_14110501_SNP [dm6]	G	A	3.082e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11773296	2R_11773296_SNP [dm3] 2R_15885791_SNP [dm6]	A	G	3.087e^-4	0.758	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	18833356	3L_18833356_SNP [dm3] 3L_18840256_SNP [dm6]	G	A	3.101e^-4	0.758	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	5710406	2R_5710406_SNP [dm3] 2R_9822901_SNP [dm6]	A	T	3.108e^-4	0.758	UTR_5_PRIME CG30001 DOWNSTREAM dila	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2R	13897266	2R_13897266_SNP [dm3] 2R_18009761_SNP [dm6]	G	A	3.110e^-4	0.758	INTERGENIC
3R	25796111	3R_25796111_SNP [dm3] 3R_29970389_SNP [dm6]	T	C	3.111e^-4	0.758	UPSTREAM TkR99D INTERGENIC
3L	10472448	3L_10472448_SNP [dm3] 3L_10479348_SNP [dm6]	T	C	3.114e^-4	0.758	INTERGENIC
3L	1249562	3L_1249562_SNP [dm3] 3L_1249562_SNP [dm6]	A	G	3.128e^-4	0.758	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9072161	2R_9072161_SNP [dm3] 2R_13184656_SNP [dm6]	G	A	3.129e^-4	0.758	DOWNSTREAM Kdm4B INTRON CG17724 & 2 others
2L	18692846	2L_18692846_SNP [dm3] 2L_18692846_SNP [dm6]	G	A	3.129e^-4	0.758	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3949968	2R_3949968_INS [dm3] 2R_8062463_INS [dm6]	G	GGTTA	3.129e^-4	0.758	INTRON CG12769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13937747	3L_13937747_SNP [dm3] 3L_13944647_SNP [dm6]	G	T	3.134e^-4	0.758	INTRON CG32137
2R	19296812	2R_19296812_SNP [dm3] 2R_23409289_SNP [dm6]	A	T	3.141e^-4	0.758	INTERGENIC
3L	1284444	3L_1284444_SNP [dm3] 3L_1284444_SNP [dm6]	G	A	3.167e^-4	0.758	INTRON CG32333
2L	9264660	2L_9264660_SNP [dm3] 2L_9264660_SNP [dm6]	T	C	3.168e^-4	0.758	INTRON Ggamma30A
2L	1287854	2L_1287854_SNP [dm3] 2L_1287854_SNP [dm6]	A	C	3.169e^-4	0.758	INTRON robo3
2L	1287861	2L_1287861_SNP [dm3] 2L_1287861_SNP [dm6]	C	T	3.169e^-4	0.758	INTRON robo3
3L	7325357	3L_7325357_SNP [dm3] 3L_7332257_SNP [dm6]	C	T	3.173e^-4	0.758	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15753399	3R_15753399_SNP [dm3] 3R_19927677_SNP [dm6]	T	A	3.179e^-4	0.758	INTRON CG4459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1137685	3L_1137685_SNP [dm3] 3L_1137685_SNP [dm6]	C	T	3.183e^-4	0.758	INTERGENIC
2L	7121862	2L_7121862_SNP [dm3] 2L_7121862_SNP [dm6]	A	T	3.189e^-4	0.758	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10550637	2R_10550637_SNP [dm3] 2R_14663132_SNP [dm6]	C	T	3.191e^-4	0.758	INTERGENIC
3R	25771070	3R_25771070_SNP [dm3] 3R_29945348_SNP [dm6]	A	G	3.192e^-4	0.758	INTRON CG15523
2R	13076680	2R_13076680_SNP [dm3] 2R_17189175_SNP [dm6]	G	A	3.193e^-4	0.758	UPSTREAM CR45323 & 1 other INTERGENIC
2R	13076681	2R_13076681_SNP [dm3] 2R_17189176_SNP [dm6]	A	G	3.193e^-4	0.758	UPSTREAM CR45323 & 1 other INTERGENIC
3R	25799316	3R_25799316_SNP [dm3] 3R_29973594_SNP [dm6]	G	A	3.198e^-4	0.758	INTERGENIC
3R	25587716	3R_25587716_SNP [dm3] 3R_29761994_SNP [dm6]	A	T	3.206e^-4	0.758	INTERGENIC
3R	25801374	3R_25801374_SNP [dm3] 3R_29975652_SNP [dm6]	C	T	3.210e^-4	0.758	INTERGENIC
3R	6428840	3R_6428840_SNP [dm3] 3R_10603118_SNP [dm6]	G	T	3.217e^-4	0.758	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16282582	3L_16282582_SNP [dm3] 3L_16289482_SNP [dm6]	T	C	3.221e^-4	0.758	DOWNSTREAM CG13045 INTERGENIC	transposable element FlyBase
3L	2572426	3L_2572426_SNP [dm3] 3L_2572426_SNP [dm6]	T	C	3.226e^-4	0.758	INTRON msn
X	8604493	X_8604493_SNP [dm3] X_8710460_SNP [dm6]	A	T	3.228e^-4	0.758	INTRON Hexo2	TF binding site BDTNP1_TFBS_dl
3L	16137443	3L_16137443_SNP [dm3] 3L_16144343_SNP [dm6]	C	T	3.229e^-4	0.758	UPSTREAM CG5151 & 1 other INTRON CG5151
2L	20803052	2L_20803052_SNP [dm3] 2L_20803052_SNP [dm6]	A	T	3.230e^-4	0.758	INTRON CG9328
3L	2001857	3L_2001857_SNP [dm3] 3L_2001857_SNP [dm6]	G	C	3.233e^-4	0.758	INTERGENIC
X	16054789	X_16054789_SNP [dm3] X_16160756_SNP [dm6]	T	G	3.234e^-4	0.758	INTERGENIC
3R	25762060	3R_25762060_SNP [dm3] 3R_29936338_SNP [dm6]	C	T	3.241e^-4	0.758	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14351065	2R_14351065_SNP [dm3] 2R_18463560_SNP [dm6]	C	A	3.241e^-4	0.758	INTRON CG30116
X	9692076	X_9692076_SNP [dm3] X_9798043_SNP [dm6]	G	A	3.251e^-4	0.758	INTRON CG32698
2L	6448403	2L_6448403_SNP [dm3] 2L_6448403_SNP [dm6]	A	C	3.252e^-4	0.758	UTR_5_PRIME CG9527 UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5624355	2L_5624355_SNP [dm3] 2L_5624355_SNP [dm6]	T	A	3.259e^-4	0.758	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18719074	2R_18719074_SNP [dm3] 2R_22831551_SNP [dm6]	C	G	3.259e^-4	0.758	SYNONYMOUS_CODING CG30272 UPSTREAM CG30265
3L	3792824	3L_3792824_SNP [dm3] 3L_3792824_SNP [dm6]	C	A	3.266e^-4	0.758	INTRON CG32264
3R	4767020	3R_4767020_SNP [dm3] 3R_8941298_SNP [dm6]	G	C	3.268e^-4	0.758	INTRON skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12120393	2R_12120393_SNP [dm3] 2R_16232888_SNP [dm6]	T	A	3.286e^-4	0.758	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16666829	3R_16666829_SNP [dm3] 3R_20841107_SNP [dm6]	C	A	3.286e^-4	0.758	DOWNSTREAM Synd INTERGENIC
3L	1284527	3L_1284527_SNP [dm3] 3L_1284527_SNP [dm6]	G	C	3.287e^-4	0.758	INTRON CG32333
3R	24467087	3R_24467087_SNP [dm3] 3R_28641365_SNP [dm6]	C	T	3.288e^-4	0.758	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14664440	2R_14664440_SNP [dm3] 2R_18776935_SNP [dm6]	A	G	3.289e^-4	0.758	UTR_5_PRIME CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	693020	3L_693020_SNP [dm3] 3L_693020_SNP [dm6]	T	C	3.289e^-4	0.758	UPSTREAM Vti1 DOWNSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1998661	3L_1998661_SNP [dm3] 3L_1998661_SNP [dm6]	T	C	3.291e^-4	0.758	INTERGENIC
X	5899862	X_5899862_SNP [dm3] X_6005829_SNP [dm6]	C	A	3.295e^-4	0.758	DOWNSTREAM CR44498 INTERGENIC
2L	5079109	2L_5079109_SNP [dm3] 2L_5079109_SNP [dm6]	C	G	3.312e^-4	0.758	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9614099	3R_9614099_INS [dm3] 3R_13788377_INS [dm6]	A	ATGGT	3.317e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19574393	2R_19574393_SNP [dm3] 2R_23686870_SNP [dm6]	G	A	3.323e^-4	0.758	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
X	8602633	X_8602633_INS [dm3] X_8708600_INS [dm6]	T	CA	3.324e^-4	0.758	UPSTREAM CR44507 DOWNSTREAM CR44508 INTERGENIC
3L	4485126	3L_4485126_SNP [dm3] 3L_4485126_SNP [dm6]	G	A	3.340e^-4	0.758	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	1288654	2L_1288654_SNP [dm3] 2L_1288654_SNP [dm6]	C	T	3.342e^-4	0.758	INTRON robo3
3R	6428437	3R_6428437_SNP [dm3] 3R_10602715_SNP [dm6]	C	T	3.344e^-4	0.758	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4636097	3L_4636097_SNP [dm3] 3L_4636097_SNP [dm6]	G	A	3.344e^-4	0.758	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2R	2743772	2R_2743772_SNP [dm3] 2R_6856267_SNP [dm6]	A	T	3.346e^-4	0.758	INTERGENIC
3L	5231649	3L_5231649_SNP [dm3] 3L_5238549_SNP [dm6]	C	A	3.347e^-4	0.758	INTRON shep
2L	13641329	2L_13641329_SNP [dm3] 2L_13641329_SNP [dm6]	T	A	3.353e^-4	0.758	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3327895	3L_3327895_SNP [dm3] 3L_3327895_SNP [dm6]	C	T	3.356e^-4	0.758	SYNONYMOUS_CODING PHGPx INTRON CG11526
X	15895483	X_15895483_SNP [dm3] X_16001450_SNP [dm6]	T	G	3.359e^-4	0.758	SYNONYMOUS_CODING vap	TF binding site mE1_TFBS_sens
X	8676769	X_8676769_SNP [dm3] X_8782736_SNP [dm6]	T	C	3.362e^-4	0.758	INTRON Lim1
2R	12666025	2R_12666025_SNP [dm3] 2R_16778520_SNP [dm6]	G	C	3.368e^-4	0.758	SYNONYMOUS_CODING Vkor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10405871	X_10405871_SNP [dm3] X_10511838_SNP [dm6]	C	T	3.370e^-4	0.758	INTRON spri
2R	18858709	2R_18858709_SNP [dm3] 2R_22971186_SNP [dm6]	A	G	3.372e^-4	0.758	INTERGENIC
2L	16091341	2L_16091341_SNP [dm3] 2L_16091341_SNP [dm6]	C	A	3.375e^-4	0.758	INTERGENIC
3R	25330400	3R_25330400_SNP [dm3] 3R_29504678_SNP [dm6]	C	A	3.380e^-4	0.758	UPSTREAM Trc8 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11226766	3R_11226766_SNP [dm3] 3R_15401044_SNP [dm6]	A	C	3.384e^-4	0.758	UTR_3_PRIME Rbp
3L	5315477	3L_5315477_SNP [dm3] 3L_5322377_SNP [dm6]	G	A	3.387e^-4	0.758	INTERGENIC
3R	18758539	3R_18758539_SNP [dm3] 3R_22932817_SNP [dm6]	C	T	3.391e^-4	0.758	INTRON klg
3R	14022372	3R_14022372_SNP [dm3] 3R_18196650_SNP [dm6]	C	T	3.394e^-4	0.758	UTR_5_PRIME Ssdp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	4683834	2R_4683834_SNP [dm3] 2R_8796329_SNP [dm6]	C	A	3.395e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_sens
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	3.406e^-4	0.758	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	3794042	3L_3794042_SNP [dm3] 3L_3794042_SNP [dm6]	A	T	3.409e^-4	0.758	INTRON CG32264
2L	5130522	2L_5130522_SNP [dm3] 2L_5130522_SNP [dm6]	G	A	3.409e^-4	0.758	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3L	2572957	3L_2572957_SNP [dm3] 3L_2572957_SNP [dm6]	C	A	3.429e^-4	0.758	INTRON msn
2R	7025252	2R_7025252_DEL [dm3] 2R_11137747_DEL [dm6]	CTAC	C	3.435e^-4	0.758	INTRON BBS4
3R	15833858	3R_15833858_SNP [dm3] 3R_20008136_SNP [dm6]	T	A	3.436e^-4	0.758	UPSTREAM MED25 INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10266234	3L_10266234_SNP [dm3] 3L_10273134_SNP [dm6]	G	A	3.436e^-4	0.758	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	26834768	3R_26834768_SNP [dm3] 3R_31009046_SNP [dm6]	T	C	3.445e^-4	0.758	INTRON 5-HT7
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	3.452e^-4	0.758	INTERGENIC
3L	3845490	3L_3845490_SNP [dm3] 3L_3845490_SNP [dm6]	G	A	3.453e^-4	0.758	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	13905902	X_13905902_SNP [dm3] X_14011869_SNP [dm6]	T	C	3.454e^-4	0.758	INTERGENIC
3L	2156435	3L_2156435_SNP [dm3] 3L_2156435_SNP [dm6]	T	C	3.460e^-4	0.758	INTRON CG15822	TF binding site mE1_TFBS_cad
2R	6919748	2R_6919748_SNP [dm3] 2R_11032243_SNP [dm6]	A	G	3.467e^-4	0.758	INTRON luna
2L	10009494	2L_10009494_SNP [dm3] 2L_10009494_SNP [dm6]	C	T	3.469e^-4	0.758	UTR_5_PRIME Trp1 UPSTREAM Trp1 DOWNSTREAM CG4747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10473568	3L_10473568_SNP [dm3] 3L_10480468_SNP [dm6]	T	A	3.478e^-4	0.758	UPSTREAM A2bp1 INTERGENIC
2L	6448502	2L_6448502_SNP [dm3] 2L_6448502_SNP [dm6]	C	T	3.483e^-4	0.758	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad
2L	13641336	2L_13641336_SNP [dm3] 2L_13641336_SNP [dm6]	T	G	3.486e^-4	0.758	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18462681	3R_18462681_SNP [dm3] 3R_22636959_SNP [dm6]	C	T	3.489e^-4	0.758	NON_SYNONYMOUS_CODING loco UPSTREAM loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6880598	3R_6880598_SNP [dm3] 3R_11054876_SNP [dm6]	T	C	3.490e^-4	0.758	INTERGENIC
2R	12120457	2R_12120457_SNP [dm3] 2R_16232952_SNP [dm6]	G	T	3.491e^-4	0.758	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6754331	3L_6754331_SNP [dm3] 3L_6761231_SNP [dm6]	C	T	3.500e^-4	0.758	UPSTREAM CG32392 INTRON CG32392
3L	2000000	3L_2000000_SNP [dm3] 3L_2000000_SNP [dm6]	G	C	3.503e^-4	0.758	INTERGENIC
2R	19163221	2R_19163221_INS [dm3] 2R_23275698_INS [dm6]	A	AT	3.509e^-4	0.758	UPSTREAM ord INTERGENIC
2L	16232608	2L_16232608_DEL [dm3] 2L_16232608_DEL [dm6]	TTATTTATTT	G	3.513e^-4	0.758	INTRON CG42817
2R	12666034	2R_12666034_SNP [dm3] 2R_16778529_SNP [dm6]	A	G	3.518e^-4	0.758	SYNONYMOUS_CODING Vkor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7628468	3L_7628468_SNP [dm3] 3L_7635368_SNP [dm6]	G	A	3.521e^-4	0.758	INTRON CG33275	TF binding site mE1_TFBS_HSA
3L	2004308	3L_2004308_SNP [dm3] 3L_2004308_SNP [dm6]	G	C	3.524e^-4	0.758	DOWNSTREAM CG42841 INTRON CG42841
2R	12665659	2R_12665659_SNP [dm3] 2R_16778154_SNP [dm6]	T	A	3.526e^-4	0.758	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8918352	2R_8918352_SNP [dm3] 2R_13030847_SNP [dm6]	C	T	3.533e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_sens
3L	3627181	3L_3627181_SNP [dm3] 3L_3627181_SNP [dm6]	C	A	3.538e^-4	0.758	INTRON dar1	TF binding site mE1_TFBS_Trl
2L	10646022	2L_10646022_SNP [dm3] 2L_10646022_SNP [dm6]	T	A	3.549e^-4	0.758	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
X	7587134	X_7587134_SNP [dm3] X_7693101_SNP [dm6]	T	C	3.549e^-4	0.758	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7103532	2L_7103532_SNP [dm3] 2L_7103532_SNP [dm6]	C	A	3.552e^-4	0.758	INTRON Pvf3
2L	5772188	2L_5772188_SNP [dm3] 2L_5772188_SNP [dm6]	C	T	3.553e^-4	0.758	UTR_5_PRIME CG9171 DOWNSTREAM CR31912 INTRON CG9171
X	2561708	X_2561708_SNP [dm3] X_2667675_SNP [dm6]	A	G	3.555e^-4	0.758	UPSTREAM sgg INTRON sgg
2L	21936580	2L_21936580_SNP [dm3] 2L_21936580_SNP [dm6]	G	T	3.558e^-4	0.758	INTERGENIC
2R	437277	2R_437277_SNP [dm3] 2R_4549772_SNP [dm6]	G	T	3.564e^-4	0.758	INTRON Stlk	transposable element FlyBase
2R	20607573	2R_20607573_SNP [dm3] 2R_24720050_SNP [dm6]	G	C	3.564e^-4	0.758	INTRON Mid1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10768422	2R_10768422_SNP [dm3] 2R_14880917_SNP [dm6]	T	G	3.569e^-4	0.758	NON_SYNONYMOUS_CODING Cyp6a9	TF binding site mE1_TFBS_inv
2R	10768829	2R_10768829_SNP [dm3] 2R_14881324_SNP [dm6]	T	C	3.569e^-4	0.758	NON_SYNONYMOUS_CODING Cyp6a9 UPSTREAM Cyp6a20	TF binding site mE1_TFBS_inv
2L	20907549	2L_20907549_SNP [dm3] 2L_20907549_SNP [dm6]	T	G	3.570e^-4	0.758	INTRON sky & 1 other
2R	6435659	2R_6435659_DEL [dm3] 2R_10548154_DEL [dm6]	ATTCGGCGAT	A	3.576e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12959277	3L_12959277_SNP [dm3] 3L_12966177_SNP [dm6]	A	G	3.576e^-4	0.758	UPSTREAM Or69a INTRON Or69a
2L	11878319	2L_11878319_SNP [dm3] 2L_11878319_SNP [dm6]	C	A	3.594e^-4	0.758	INTRON Pde1c
X	5899845	X_5899845_SNP [dm3] X_6005812_SNP [dm6]	C	T	3.599e^-4	0.758	DOWNSTREAM CR44498 INTERGENIC
X	5899854	X_5899854_SNP [dm3] X_6005821_SNP [dm6]	A	G	3.599e^-4	0.758	DOWNSTREAM CR44498 INTERGENIC
X	5899871	X_5899871_SNP [dm3] X_6005838_SNP [dm6]	A	G	3.599e^-4	0.758	DOWNSTREAM CR44498 INTERGENIC
2R	17226760	2R_17226760_SNP [dm3] 2R_21339255_SNP [dm6]	T	C	3.600e^-4	0.758	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18007073	3L_18007073_SNP [dm3] 3L_18013973_SNP [dm6]	C	T	3.601e^-4	0.758	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1077688	3L_1077688_SNP [dm3] 3L_1077688_SNP [dm6]	C	G	3.601e^-4	0.758	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4010041	2L_4010041_SNP [dm3] 2L_4010041_SNP [dm6]	G	A	3.606e^-4	0.758	DOWNSTREAM CG43774 INTERGENIC
3L	7889610	3L_7889610_SNP [dm3] 3L_7896510_SNP [dm6]	G	T	3.609e^-4	0.758	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
2R	12666831	2R_12666831_SNP [dm3] 2R_16779326_SNP [dm6]	C	T	3.613e^-4	0.758	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
3L	4072036	3L_4072036_SNP [dm3] 3L_4072036_SNP [dm6]	A	C	3.616e^-4	0.758	UTR_3_PRIME Faa UPSTREAM wit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	12666487	2R_12666487_SNP [dm3] 2R_16778982_SNP [dm6]	C	G	3.620e^-4	0.758	UTR_3_PRIME Vkor UPSTREAM resilin
2L	9339427	2L_9339427_SNP [dm3] 2L_9339427_SNP [dm6]	G	A	3.622e^-4	0.758	INTRON Eaat1	TF binding site mE1_TFBS_inv
3R	24676578	3R_24676578_SNP [dm3] 3R_28850856_SNP [dm6]	C	G	3.631e^-4	0.758	INTRON spg
3R	25792749	3R_25792749_INS [dm3] 3R_29967027_INS [dm6]	A	AC	3.635e^-4	0.758	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25792765	3R_25792765_SNP [dm3] 3R_29967043_SNP [dm6]	G	A	3.635e^-4	0.758	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7457580	3L_7457580_SNP [dm3] 3L_7464480_SNP [dm6]	A	T	3.644e^-4	0.758	INTERGENIC
X	9503426	X_9503426_SNP [dm3] X_9609393_SNP [dm6]	A	G	3.645e^-4	0.758	SYNONYMOUS_CODING CG42797 UPSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5532733	X_5532733_SNP [dm3] X_5638700_SNP [dm6]	T	G	3.647e^-4	0.758	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
3R	24844807	3R_24844807_DEL [dm3] 3R_29019085_DEL [dm6]	TGTA	T	3.647e^-4	0.758	INTRON wat
3L	3874200	3L_3874200_SNP [dm3] 3L_3874200_SNP [dm6]	G	A	3.649e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
3L	23078553	3L_23078553_DEL [dm3] 3L_23085453_DEL [dm6]	TT	T	3.662e^-4	0.758	INTERGENIC	transposable element FlyBase
2R	12665551	2R_12665551_SNP [dm3] 2R_16778046_SNP [dm6]	T	C	3.662e^-4	0.758	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15056392	3R_15056392_SNP [dm3] 3R_19230670_SNP [dm6]	T	A	3.662e^-4	0.758	SYNONYMOUS_CODING CG3773 DOWNSTREAM unc79	TF binding site mE1_TFBS_sens
3R	26310375	3R_26310375_SNP [dm3] 3R_30484653_SNP [dm6]	A	G	3.663e^-4	0.758	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20659556	X_20659556_SNP [dm3] X_20788529_SNP [dm6]	T	C	3.663e^-4	0.758	UPSTREAM shakB INTRON shakB
3L	3797233	3L_3797233_SNP [dm3] 3L_3797233_SNP [dm6]	T	C	3.670e^-4	0.758	INTRON CG32264
2R	17945283	2R_17945283_SNP [dm3] 2R_22057778_SNP [dm6]	T	C	3.673e^-4	0.758	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25766285	3R_25766285_SNP [dm3] 3R_29940563_SNP [dm6]	G	T	3.674e^-4	0.758	SPLICE_SITE_REGION CG15523 INTRON CG15523
3R	25766388	3R_25766388_SNP [dm3] 3R_29940666_SNP [dm6]	G	A	3.674e^-4	0.758	SYNONYMOUS_CODING CG15523
2L	20774931	2L_20774931_SNP [dm3] 2L_20774931_SNP [dm6]	G	T	3.680e^-4	0.758	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15963707	2L_15963707_SNP [dm3] 2L_15963707_SNP [dm6]	A	G	3.686e^-4	0.758	INTERGENIC
3R	4883267	3R_4883267_INS [dm3] 3R_9057545_INS [dm6]	T	TT	3.695e^-4	0.758	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10921896	3L_10921896_SNP [dm3] 3L_10928796_SNP [dm6]	C	T	3.699e^-4	0.758	INTERGENIC
3R	17524691	3R_17524691_SNP [dm3] 3R_21698969_SNP [dm6]	G	T	3.705e^-4	0.758	INTRON CG31176
3L	18305005	3L_18305005_SNP [dm3] 3L_18311905_SNP [dm6]	T	C	3.705e^-4	0.758	INTERGENIC
3L	16137545	3L_16137545_SNP [dm3] 3L_16144445_SNP [dm6]	A	C	3.710e^-4	0.758	UPSTREAM CG5151 & 1 other INTRON CG5151
3R	24570911	3R_24570911_SNP [dm3] 3R_28745189_SNP [dm6]	T	G	3.712e^-4	0.758	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12660264	2R_12660264_SNP [dm3] 2R_16772759_SNP [dm6]	C	A	3.714e^-4	0.758	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8918212	2R_8918212_SNP [dm3] 2R_13030707_SNP [dm6]	A	T	3.714e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_sens
X	8632764	X_8632764_SNP [dm3] X_8738731_SNP [dm6]	C	G	3.719e^-4	0.758	INTERGENIC
3R	16414826	3R_16414826_SNP [dm3] 3R_20589104_SNP [dm6]	A	C	3.723e^-4	0.758	SYNONYMOUS_CODING Srp72 UPSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8604701	X_8604701_SNP [dm3] X_8710668_SNP [dm6]	G	A	3.732e^-4	0.758	SYNONYMOUS_CODING Hexo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	17524689	3R_17524689_SNP [dm3] 3R_21698967_SNP [dm6]	T	A	3.743e^-4	0.758	INTRON CG31176
3L	13169380	3L_13169380_SNP [dm3] 3L_13176280_SNP [dm6]	G	T	3.744e^-4	0.758	SYNONYMOUS_CODING snky
2R	19238816	2R_19238816_SNP [dm3] 2R_23351293_SNP [dm6]	T	C	3.748e^-4	0.758	UPSTREAM CG34210 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	18841067	3L_18841067_DEL [dm3] 3L_18847967_DEL [dm6]	ACAT	A	3.755e^-4	0.758	INTERGENIC	transposable element FlyBase
3L	18841073	3L_18841073_DEL [dm3] 3L_18847973_DEL [dm6]	TTTTTA	G	3.755e^-4	0.758	INTERGENIC	transposable element FlyBase
3R	23378494	3R_23378494_INS [dm3] 3R_27552772_INS [dm6]	T	TT	3.764e^-4	0.758	SPLICE_SITE_REGION Klp98A INTRON Klp98A	TF binding site mE1_TFBS_cad
2L	11668299	2L_11668299_SNP [dm3] 2L_11668299_SNP [dm6]	G	A	3.769e^-4	0.758	INTERGENIC
3R	21356866	3R_21356866_SNP [dm3] 3R_25531144_SNP [dm6]	C	T	3.770e^-4	0.758	INTRON msi
3R	4012233	3R_4012233_SNP [dm3] 3R_8186511_SNP [dm6]	G	A	3.770e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1257671	3L_1257671_SNP [dm3] 3L_1257671_SNP [dm6]	C	T	3.771e^-4	0.758	INTRON CG9134
3R	6426819	3R_6426819_SNP [dm3] 3R_10601097_SNP [dm6]	C	T	3.772e^-4	0.758	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11491034	2R_11491034_SNP [dm3] 2R_15603529_SNP [dm6]	C	T	3.772e^-4	0.758	INTERGENIC
3L	9481093	3L_9481093_SNP [dm3] 3L_9487993_SNP [dm6]	A	T	3.777e^-4	0.758	UPSTREAM pall DOWNSTREAM CG32036 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25758907	3R_25758907_SNP [dm3] 3R_29933185_SNP [dm6]	G	A	3.789e^-4	0.758	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15336118	3L_15336118_SNP [dm3] 3L_15343018_SNP [dm6]	A	C	3.790e^-4	0.758	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
2R	12064185	2R_12064185_SNP [dm3] 2R_16176680_SNP [dm6]	T	G	3.807e^-4	0.758	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F
3L	3718111	3L_3718111_SNP [dm3] 3L_3718111_SNP [dm6]	C	T	3.808e^-4	0.758	INTRON CG32264
2R	16929490	2R_16929490_SNP [dm3] 2R_21041985_SNP [dm6]	A	C	3.809e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15732416	2R_15732416_SNP [dm3] 2R_19844911_SNP [dm6]	A	G	3.810e^-4	0.758	INTERGENIC
3L	14331242	3L_14331242_SNP [dm3] 3L_14338142_SNP [dm6]	C	G	3.822e^-4	0.758	INTRON fz	TF binding site BDTNP1_TFBS_dl
3R	2483266	3R_2483266_SNP [dm3] 3R_6657544_SNP [dm6]	A	T	3.826e^-4	0.758	UPSTREAM twr & 1 other INTRON CG1307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	12667214	2R_12667214_SNP [dm3] 2R_16779709_SNP [dm6]	C	T	3.826e^-4	0.758	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	12666638	2R_12666638_SNP [dm3] 2R_16779133_SNP [dm6]	C	A	3.831e^-4	0.758	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
3R	25770691	3R_25770691_SNP [dm3] 3R_29944969_SNP [dm6]	G	T	3.833e^-4	0.758	NON_SYNONYMOUS_CODING CG15523
3L	7923415	3L_7923415_SNP [dm3] 3L_7930315_SNP [dm6]	C	A	3.834e^-4	0.758	SYNONYMOUS_CODING syd
X	11103927	X_11103927_SNP [dm3] X_11209894_SNP [dm6]	A	C	3.845e^-4	0.758	INTERGENIC
2L	8092569	2L_8092569_SNP [dm3] 2L_8092569_SNP [dm6]	G	T	3.858e^-4	0.758	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13239933	3L_13239933_SNP [dm3] 3L_13246833_SNP [dm6]	C	T	3.859e^-4	0.758	DOWNSTREAM CG32119 INTRON caps
2R	19256790	2R_19256790_SNP [dm3] 2R_23369267_SNP [dm6]	G	A	3.859e^-4	0.758	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2L	9908150	2L_9908150_SNP [dm3] 2L_9908150_SNP [dm6]	A	G	3.864e^-4	0.758	DOWNSTREAM Etl1 INTRON CG13124	TF binding site BDTNP1_TFBS_dl
3R	25775887	3R_25775887_SNP [dm3] 3R_29950165_SNP [dm6]	C	A	3.866e^-4	0.758	DOWNSTREAM TkR99D INTERGENIC
X	16814274	X_16814274_SNP [dm3] X_16920241_SNP [dm6]	A	T	3.866e^-4	0.758	INTRON CG4928
3R	16018104	3R_16018104_SNP [dm3] 3R_20192382_SNP [dm6]	T	C	3.867e^-4	0.758	INTERGENIC
3L	5910514	3L_5910514_SNP [dm3] 3L_5917414_SNP [dm6]	A	C	3.868e^-4	0.758	UTR_3_PRIME CG13288 UPSTREAM CR45167 DOWNSTREAM CG10483
3L	6778663	3L_6778663_SNP [dm3] 3L_6785563_SNP [dm6]	A	G	3.886e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	20828210	3R_20828210_SNP [dm3] 3R_25002488_SNP [dm6]	G	A	3.888e^-4	0.758	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13937637	3L_13937637_SNP [dm3] 3L_13944537_SNP [dm6]	T	C	3.899e^-4	0.758	INTRON CG32137
2R	493011	2R_493011_SNP [dm3] 2R_4605506_SNP [dm6]	G	C	3.901e^-4	0.758	INTRON p120ctn	transposable element FlyBase
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	3.910e^-4	0.758	INTRON wat
2L	18692813	2L_18692813_SNP [dm3] 2L_18692813_SNP [dm6]	A	G	3.912e^-4	0.758	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15336088	3L_15336088_SNP [dm3] 3L_15342988_SNP [dm6]	A	G	3.915e^-4	0.758	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
3L	5485885	3L_5485885_SNP [dm3] 3L_5492785_SNP [dm6]	C	T	3.919e^-4	0.758	DOWNSTREAM CR44520 INTERGENIC
3L	10351036	3L_10351036_SNP [dm3] 3L_10357936_SNP [dm6]	T	C	3.920e^-4	0.758	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21620108	2L_21620108_SNP [dm3] 2L_21620108_SNP [dm6]	T	A	3.920e^-4	0.758	INTRON CG2201	TF binding site mE1_TFBS_zfh1
X	9525866	X_9525866_SNP [dm3] X_9631833_SNP [dm6]	C	A	3.927e^-4	0.758	INTRON l_1_G0232
3L	5484255	3L_5484255_SNP [dm3] 3L_5491155_SNP [dm6]	C	T	3.929e^-4	0.758	INTERGENIC
2R	16932396	2R_16932396_SNP [dm3] 2R_21044891_SNP [dm6]	G	C	3.930e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26424484	3R_26424484_SNP [dm3] 3R_30598762_SNP [dm6]	C	T	3.932e^-4	0.758	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12664414	2R_12664414_SNP [dm3] 2R_16776909_SNP [dm6]	T	C	3.938e^-4	0.758	INTERGENIC
3R	25754897	3R_25754897_SNP [dm3] 3R_29929175_SNP [dm6]	C	T	3.939e^-4	0.758	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	21796369	3R_21796369_SNP [dm3] 3R_25970647_SNP [dm6]	A	C	3.945e^-4	0.758	INTRON CG42261
X	13905921	X_13905921_SNP [dm3] X_14011888_SNP [dm6]	A	G	3.945e^-4	0.758	INTERGENIC
3L	1257622	3L_1257622_SNP [dm3] 3L_1257622_SNP [dm6]	G	T	3.948e^-4	0.758	INTRON CG9134
2R	12558219	2R_12558219_SNP [dm3] 2R_16670714_SNP [dm6]	T	C	3.949e^-4	0.758	SYNONYMOUS_CODING CG34457
2R	7408836	2R_7408836_SNP [dm3] 2R_11521331_SNP [dm6]	C	G	3.951e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25796121	3R_25796121_SNP [dm3] 3R_29970399_SNP [dm6]	A	T	3.953e^-4	0.758	UPSTREAM TkR99D INTERGENIC
3R	26989401	3R_26989401_SNP [dm3] 3R_31163679_SNP [dm6]	T	A	3.958e^-4	0.758	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_chinmo
3R	25758120	3R_25758120_SNP [dm3] 3R_29932398_SNP [dm6]	A	G	3.959e^-4	0.758	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13618519	2L_13618519_SNP [dm3] 2L_13618519_SNP [dm6]	T	G	3.964e^-4	0.758	INTRON kuz
3R	21821552	3R_21821552_SNP [dm3] 3R_25995830_SNP [dm6]	G	A	3.968e^-4	0.758	DOWNSTREAM CG43116 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	18726393	2R_18726393_SNP [dm3] 2R_22838870_SNP [dm6]	T	C	3.983e^-4	0.758	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8006587	2L_8006587_SNP [dm3] 2L_8006587_SNP [dm6]	G	C	3.985e^-4	0.758	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	8601192	X_8601192_SNP [dm3] X_8707159_SNP [dm6]	C	T	3.992e^-4	0.758	UPSTREAM CR44508 DOWNSTREAM CR44507 INTERGENIC
2L	16470679	2L_16470679_SNP [dm3] 2L_16470679_SNP [dm6]	A	T	3.997e^-4	0.758	INTRON dac	regulatory region REDfly_CRMs
3L	2006300	3L_2006300_SNP [dm3] 3L_2006300_SNP [dm6]	T	C	4.000e^-4	0.758	UPSTREAM CG42841 INTERGENIC
X	13905827	X_13905827_SNP [dm3] X_14011794_SNP [dm6]	A	G	4.000e^-4	0.758	INTERGENIC
3R	6926655	3R_6926655_SNP [dm3] 3R_11100933_SNP [dm6]	G	C	4.011e^-4	0.758	UPSTREAM CR45579 INTERGENIC
3R	2485950	3R_2485950_SNP [dm3] 3R_6660228_SNP [dm6]	T	C	4.015e^-4	0.758	UPSTREAM agt DOWNSTREAM twr INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3934863	2L_3934863_SNP [dm3] 2L_3934863_SNP [dm6]	G	T	4.016e^-4	0.758	INTRON fred
3R	10504978	3R_10504978_INS [dm3] 3R_14679256_INS [dm6]	A	ATA	4.016e^-4	0.758	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	25767897	3R_25767897_SNP [dm3] 3R_29942175_SNP [dm6]	A	G	4.017e^-4	0.758	SYNONYMOUS_CODING CG15523
X	8623857	X_8623857_INS [dm3] X_8729824_INS [dm6]	A	AA	4.019e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9037530	3R_9037530_SNP [dm3] 3R_13211808_SNP [dm6]	C	G	4.025e^-4	0.758	INTRON CG8483
2R	12566371	2R_12566371_SNP [dm3] 2R_16678866_SNP [dm6]	G	T	4.030e^-4	0.758	INTRON CG30463
2R	14080948	2R_14080948_SNP [dm3] 2R_18193443_SNP [dm6]	G	T	4.039e^-4	0.758	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17771268	3L_17771268_SNP [dm3] 3L_17778168_SNP [dm6]	G	T	4.055e^-4	0.758	INTERGENIC
3R	13440865	3R_13440865_SNP [dm3] 3R_17615143_SNP [dm6]	A	C	4.057e^-4	0.758	DOWNSTREAM CG14327 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	16588366	2L_16588366_INS [dm3] 2L_16588366_INS [dm6]	A	AA	4.059e^-4	0.758	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12218508	2R_12218508_SNP [dm3] 2R_16331003_SNP [dm6]	G	A	4.059e^-4	0.758	INTRON Vha44	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

PC2_Nutri_Score_High phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results