DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.096e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2332 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9337999	2L_9337999_SNP [dm3] 2L_9337999_SNP [dm6]	T	C	2.637e^-7	0.332	SPLICE_SITE_REGION Eaat1 INTRON Eaat1
2L	9337986	2L_9337986_SNP [dm3] 2L_9337986_SNP [dm6]	A	C	3.546e^-7	0.332	INTRON Eaat1
X	16918901	X_16918901_SNP [dm3] X_17024868_SNP [dm6]	G	C	9.363e^-7	0.462	DOWNSTREAM CG43997 INTRON CG45002
X	17715695	X_17715695_SNP [dm3] X_17821662_SNP [dm6]	C	T	1.288e^-6	0.462	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	17715708	X_17715708_DEL [dm3] X_17821675_DEL [dm6]	TGTTACT	T	1.447e^-6	0.462	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	19085373	2R_19085373_SNP [dm3] 2R_23197850_SNP [dm6]	T	G	1.704e^-6	0.462	INTRON CG34371
2R	9127159	2R_9127159_SNP [dm3] 2R_13239654_SNP [dm6]	T	A	2.067e^-6	0.462	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10697136	3L_10697136_DEL [dm3] 3L_10704036_DEL [dm6]	TT	T	2.371e^-6	0.462	INTERGENIC
2R	9127115	2R_9127115_SNP [dm3] 2R_13239610_SNP [dm6]	A	C	3.135e^-6	0.462	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	17715730	X_17715730_SNP [dm3] X_17821697_SNP [dm6]	T	A	3.219e^-6	0.462	UTR_3_PRIME Socs16D
2L	9337938	2L_9337938_SNP [dm3] 2L_9337938_SNP [dm6]	T	A	3.524e^-6	0.462	INTRON Eaat1
2R	19317385	2R_19317385_SNP [dm3] 2R_23429862_SNP [dm6]	A	G	3.715e^-6	0.462	INTRON CG9815
3L	10697113	3L_10697113_SNP [dm3] 3L_10704013_SNP [dm6]	A	C	3.802e^-6	0.462	INTERGENIC
2L	15990382	2L_15990382_SNP [dm3] 2L_15990382_SNP [dm6]	A	T	4.138e^-6	0.462	DOWNSTREAM CR43412 INTERGENIC
2L	1070360	2L_1070360_SNP [dm3] 2L_1070360_SNP [dm6]	G	A	4.325e^-6	0.462	INTRON S	TF binding site mE1_TFBS_cad
2L	9337929	2L_9337929_SNP [dm3] 2L_9337929_SNP [dm6]	T	C	4.915e^-6	0.462	UTR_5_PRIME Eaat1 INTRON Eaat1
3L	9433547	3L_9433547_SNP [dm3] 3L_9440447_SNP [dm6]	A	C	4.955e^-6	0.462	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3
3L	10697056	3L_10697056_SNP [dm3] 3L_10703956_SNP [dm6]	A	T	5.000e^-6	0.462	INTERGENIC
3R	24184710	3R_24184710_SNP [dm3] 3R_28358988_SNP [dm6]	T	G	5.019e^-6	0.462	INTERGENIC
3R	8080148	3R_8080148_SNP [dm3] 3R_12254426_SNP [dm6]	T	C	5.693e^-6	0.462	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5688365	3R_5688365_SNP [dm3] 3R_9862643_SNP [dm6]	A	G	5.707e^-6	0.462	INTRON Teh1
2L	11195016	2L_11195016_SNP [dm3] 2L_11195016_SNP [dm6]	T	C	5.913e^-6	0.462	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
2L	9337981	2L_9337981_SNP [dm3] 2L_9337981_SNP [dm6]	C	A	6.080e^-6	0.462	INTRON Eaat1
3R	24184039	3R_24184039_SNP [dm3] 3R_28358317_SNP [dm6]	A	T	6.183e^-6	0.462	INTERGENIC
3R	13366999	3R_13366999_SNP [dm3] 3R_17541277_SNP [dm6]	A	G	6.404e^-6	0.462	NON_SYNONYMOUS_CODING SF1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8938390	2R_8938390_SNP [dm3] 2R_13050885_SNP [dm6]	G	A	6.899e^-6	0.462	INTERGENIC
2L	9337953	2L_9337953_DEL [dm3] 2L_9337953_DEL [dm6]	AAACAAATAGATTCTATTAT...	A	7.021e^-6	0.462	INTRON Eaat1
X	16516033	X_16516033_SNP [dm3] X_16622000_SNP [dm6]	A	T	7.098e^-6	0.462	UPSTREAM CG9782 INTERGENIC
2L	9337952	2L_9337952_SNP [dm3] 2L_9337952_SNP [dm6]	G	T	7.142e^-6	0.462	INTRON Eaat1
2R	5980207	2R_5980207_SNP [dm3] 2R_10092702_SNP [dm6]	C	G	7.615e^-6	0.476	INTRON CG2269
X	21960760	X_21960760_SNP [dm3] X_22558924_SNP [dm6]	T	C	7.879e^-6	0.476	INTERGENIC	transposable element FlyBase
2L	9337927	2L_9337927_SNP [dm3] 2L_9337927_SNP [dm6]	A	G	8.946e^-6	0.524	UTR_5_PRIME Eaat1 INTRON Eaat1
2L	15990388	2L_15990388_SNP [dm3] 2L_15990388_SNP [dm6]	A	G	9.937e^-6	0.564	DOWNSTREAM CR43412 INTERGENIC
2R	3257491	2R_3257491_SNP [dm3] 2R_7369986_SNP [dm6]	T	C	1.040e^-5	0.573	INTRON Dscam1
2R	8724176	2R_8724176_SNP [dm3] 2R_12836671_SNP [dm6]	C	T	1.127e^-5	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16899126	X_16899126_SNP [dm3] X_17005093_SNP [dm6]	G	A	1.210e^-5	0.578	INTRON CG45002
3L	15705645	3L_15705645_SNP [dm3] 3L_15712545_SNP [dm6]	G	T	1.255e^-5	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	10697153	3L_10697153_SNP [dm3] 3L_10704053_SNP [dm6]	C	T	1.272e^-5	0.578	INTERGENIC
2R	8937359	2R_8937359_SNP [dm3] 2R_13049854_SNP [dm6]	C	T	1.292e^-5	0.578	UPSTREAM CG13324 INTERGENIC
2R	8937376	2R_8937376_SNP [dm3] 2R_13049871_SNP [dm6]	A	T	1.292e^-5	0.578	UPSTREAM CG13324 INTERGENIC
2R	8937487	2R_8937487_SNP [dm3] 2R_13049982_SNP [dm6]	C	T	1.292e^-5	0.578	UPSTREAM CG13324 INTERGENIC
2R	9127105	2R_9127105_SNP [dm3] 2R_13239600_SNP [dm6]	A	G	1.352e^-5	0.578	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11823406	3L_11823406_SNP [dm3] 3L_11830306_SNP [dm6]	G	A	1.398e^-5	0.578	SYNONYMOUS_CODING CG7264 INTRON CycA	TF binding site mE1_TFBS_sens
3L	11526225	3L_11526225_SNP [dm3] 3L_11533125_SNP [dm6]	C	T	1.403e^-5	0.578	INTRON Mob2
X	6934656	X_6934656_SNP [dm3] X_7040623_SNP [dm6]	G	A	1.406e^-5	0.578	UTR_5_PRIME CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	6404817	3R_6404817_SNP [dm3] 3R_10579095_SNP [dm6]	A	C	1.418e^-5	0.578	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	10007632	2R_10007632_SNP [dm3] 2R_14120127_SNP [dm6]	T	A	1.486e^-5	0.593	INTRON Prosap	TF binding site mE1_TFBS_HSA
3R	12512612	3R_12512612_SNP [dm3] 3R_16686890_SNP [dm6]	A	T	1.538e^-5	0.6	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16231331	X_16231331_SNP [dm3] X_16337298_SNP [dm6]	A	C	1.641e^-5	0.619	INTRON Dsp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3257580	2R_3257580_SNP [dm3] 2R_7370075_SNP [dm6]	T	C	1.651e^-5	0.619	INTRON Dscam1
3R	20103360	3R_20103360_SNP [dm3] 3R_24277638_SNP [dm6]	C	A	1.780e^-5	0.639	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
3L	4270024	3L_4270024_SNP [dm3] 3L_4270024_SNP [dm6]	A	T	1.816e^-5	0.639	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4270079	3L_4270079_SNP [dm3] 3L_4270079_SNP [dm6]	T	A	1.816e^-5	0.639	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2513159	3L_2513159_SNP [dm3] 3L_2513159_SNP [dm6]	G	A	1.872e^-5	0.639	INTRON Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13264175	3R_13264175_SNP [dm3] 3R_17438453_SNP [dm6]	T	C	1.875e^-5	0.639	DOWNSTREAM CG14331 INTRON CG5873
2R	3257560	2R_3257560_SNP [dm3] 2R_7370055_SNP [dm6]	C	T	1.928e^-5	0.645	INTRON Dscam1
X	16899139	X_16899139_SNP [dm3] X_17005106_SNP [dm6]	A	T	2.061e^-5	0.648	INTRON CG45002
2R	10580177	2R_10580177_SNP [dm3] 2R_14692672_SNP [dm6]	A	G	2.078e^-5	0.648	INTRON mspo
3L	19205114	3L_19205114_SNP [dm3] 3L_19212014_SNP [dm6]	A	T	2.121e^-5	0.648	INTRON fz2
3R	13374051	3R_13374051_SNP [dm3] 3R_17548329_SNP [dm6]	T	C	2.194e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12764153	2R_12764153_SNP [dm3] 2R_16876648_SNP [dm6]	C	T	2.204e^-5	0.648	NON_SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_chinmo
X	20217270	X_20217270_SNP [dm3] X_20346243_SNP [dm6]	A	C	2.205e^-5	0.648	INTERGENIC
2L	11397732	2L_11397732_SNP [dm3] 2L_11397732_SNP [dm6]	A	T	2.206e^-5	0.648	INTERGENIC	regulatory region REDfly_CRMs
3L	15705781	3L_15705781_DEL [dm3] 3L_15712681_DEL [dm6]	GCGAAA	G	2.236e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	19085368	2R_19085368_DEL [dm3] 2R_23197845_DEL [dm6]	GG	G	2.247e^-5	0.648	INTRON CG34371
2R	16764348	2R_16764348_SNP [dm3] 2R_20876843_SNP [dm6]	T	C	2.298e^-5	0.652	INTRON Ipk1
X	16130895	X_16130895_SNP [dm3] X_16236862_SNP [dm6]	T	A	2.333e^-5	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	13321820	X_13321820_SNP [dm3] X_13427787_SNP [dm6]	G	T	2.376e^-5	0.655	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12015931	3L_12015931_SNP [dm3] 3L_12022831_SNP [dm6]	T	C	2.426e^-5	0.655	INTRON rols
X	20734893	X_20734893_INS [dm3] X_20863866_INS [dm6]	T	TAGATT	2.459e^-5	0.655	UPSTREAM CG43193 INTRON shakB
X	16899150	X_16899150_DEL [dm3] X_17005117_DEL [dm6]	CACATGC	C	2.533e^-5	0.655	INTRON CG45002
2R	8938960	2R_8938960_DEL [dm3] 2R_13051455_DEL [dm6]	TT	T	2.548e^-5	0.655	INTERGENIC
2R	15281301	2R_15281301_SNP [dm3] 2R_19393796_SNP [dm6]	G	A	2.553e^-5	0.655	SYNONYMOUS_CODING SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10053109	3R_10053109_SNP [dm3] 3R_14227387_SNP [dm6]	A	T	2.645e^-5	0.67	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
2L	13413679	2L_13413679_SNP [dm3] 2L_13413679_SNP [dm6]	G	A	2.753e^-5	0.68	UTR_3_PRIME CG16848 DOWNSTREAM CG16956
3R	13959851	3R_13959851_SNP [dm3] 3R_18134129_SNP [dm6]	T	A	2.779e^-5	0.68	UTR_3_PRIME sr DOWNSTREAM sr
2L	1165333	2L_1165333_SNP [dm3] 2L_1165333_SNP [dm6]	T	C	2.793e^-5	0.68	NON_SYNONYMOUS_CODING IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18508942	2L_18508942_DEL [dm3] 2L_18508942_DEL [dm6]	TAGGGGG	T	2.942e^-5	0.707	UPSTREAM CG10178 INTERGENIC
3R	13264347	3R_13264347_SNP [dm3] 3R_17438625_SNP [dm6]	T	C	3.021e^-5	0.709	DOWNSTREAM CG14331 INTRON CG5873
3L	15705789	3L_15705789_SNP [dm3] 3L_15712689_SNP [dm6]	T	A	3.072e^-5	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	8938969	2R_8938969_SNP [dm3] 2R_13051464_SNP [dm6]	A	C	3.077e^-5	0.709	INTERGENIC
X	9846610	X_9846610_SNP [dm3] X_9952577_SNP [dm6]	G	T	3.104e^-5	0.709	INTERGENIC
X	16899211	X_16899211_SNP [dm3] X_17005178_SNP [dm6]	A	G	3.148e^-5	0.71	INTRON CG45002
3R	12860093	3R_12860093_DEL [dm3] 3R_17034371_DEL [dm6]	TGATCT	A	3.244e^-5	0.71	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2R	3507859	2R_3507859_SNP [dm3] 2R_7620354_SNP [dm6]	C	T	3.287e^-5	0.71	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_chinmo
2L	1956654	2L_1956654_SNP [dm3] 2L_1956654_SNP [dm6]	C	T	3.297e^-5	0.71	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10665197	3L_10665197_SNP [dm3] 3L_10672097_SNP [dm6]	G	T	3.330e^-5	0.71	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13951362	2L_13951362_SNP [dm3] 2L_13951362_SNP [dm6]	A	C	3.331e^-5	0.71	INTRON Ance-3
2L	908104	2L_908104_SNP [dm3] 2L_908104_SNP [dm6]	G	T	3.476e^-5	0.726	INTERGENIC
3R	24098443	3R_24098443_SNP [dm3] 3R_28272721_SNP [dm6]	C	G	3.487e^-5	0.726	INTERGENIC
3L	4211889	3L_4211889_SNP [dm3] 3L_4211889_SNP [dm6]	C	G	3.576e^-5	0.729	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3R	24186904	3R_24186904_SNP [dm3] 3R_28361182_SNP [dm6]	A	T	3.577e^-5	0.729	INTERGENIC
3R	10053098	3R_10053098_SNP [dm3] 3R_14227376_SNP [dm6]	G	T	3.664e^-5	0.739	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3L	9433633	3L_9433633_SNP [dm3] 3L_9440533_SNP [dm6]	T	C	3.760e^-5	0.75	UTR_3_PRIME Nf-YA INTRON Bet3
2R	10111074	2R_10111074_SNP [dm3] 2R_14223569_SNP [dm6]	T	C	3.855e^-5	0.757	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2R	3257836	2R_3257836_SNP [dm3] 2R_7370331_SNP [dm6]	T	G	3.892e^-5	0.757	INTRON Dscam1	regulatory region REDfly_CRMs
2R	17030247	2R_17030247_SNP [dm3] 2R_21142742_SNP [dm6]	G	C	3.962e^-5	0.757	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	10580250	2R_10580250_SNP [dm3] 2R_14692745_SNP [dm6]	T	G	3.988e^-5	0.757	INTRON mspo
2L	1054577	2L_1054577_SNP [dm3] 2L_1054577_SNP [dm6]	T	A	4.048e^-5	0.757	INTRON S	TF binding site BDTNP1_TFBS_twi
X	16230647	X_16230647_SNP [dm3] X_16336614_SNP [dm6]	C	T	4.074e^-5	0.757	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19195200	2R_19195200_SNP [dm3] 2R_23307677_SNP [dm6]	T	G	4.082e^-5	0.757	DOWNSTREAM Prosbeta5R1 INTERGENIC
2L	13146442	2L_13146442_SNP [dm3] 2L_13146442_SNP [dm6]	C	A	4.143e^-5	0.757	UPSTREAM CR44199 INTERGENIC
X	9978916	X_9978916_SNP [dm3] X_10084883_SNP [dm6]	A	T	4.203e^-5	0.757	UTR_3_PRIME CG2972 DOWNSTREAM CG2974 & 1 other
2L	17155324	2L_17155324_SNP [dm3] 2L_17155324_SNP [dm6]	G	A	4.242e^-5	0.757	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
2L	17155326	2L_17155326_SNP [dm3] 2L_17155326_SNP [dm6]	A	T	4.242e^-5	0.757	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
3R	23722702	3R_23722702_SNP [dm3] 3R_27896980_SNP [dm6]	G	A	4.279e^-5	0.757	INTRON CG34353
3R	21622740	3R_21622740_SNP [dm3] 3R_25797018_SNP [dm6]	T	G	4.418e^-5	0.759	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15690074	3L_15690074_SNP [dm3] 3L_15696974_SNP [dm6]	A	T	4.505e^-5	0.759	DOWNSTREAM comm2 INTERGENIC
2R	8724172	2R_8724172_SNP [dm3] 2R_12836667_SNP [dm6]	T	C	4.546e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1070334	2L_1070334_SNP [dm3] 2L_1070334_SNP [dm6]	G	A	4.547e^-5	0.759	INTRON S	TF binding site mE1_TFBS_cad
3L	5405705	3L_5405705_SNP [dm3] 3L_5412605_SNP [dm6]	T	A	4.561e^-5	0.759	INTERGENIC
2L	7073837	2L_7073837_SNP [dm3] 2L_7073837_SNP [dm6]	A	T	4.576e^-5	0.759	INTRON Pvf2
2R	10111065	2R_10111065_SNP [dm3] 2R_14223560_SNP [dm6]	T	C	4.577e^-5	0.759	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
3R	15814754	3R_15814754_SNP [dm3] 3R_19989032_SNP [dm6]	G	A	4.682e^-5	0.76	INTRON Hs6st	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10515016	2R_10515016_SNP [dm3] 2R_14627511_SNP [dm6]	G	T	4.774e^-5	0.76	INTERGENIC
3R	24967313	3R_24967313_SNP [dm3] 3R_29141591_SNP [dm6]	T	G	4.785e^-5	0.76	INTRON CG14516
3R	13958095	3R_13958095_SNP [dm3] 3R_18132373_SNP [dm6]	A	G	4.798e^-5	0.76	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11397687	2L_11397687_SNP [dm3] 2L_11397687_SNP [dm6]	A	G	4.819e^-5	0.76	INTERGENIC	regulatory region REDfly_CRMs
3L	1528649	3L_1528649_SNP [dm3] 3L_1528649_SNP [dm6]	G	A	4.840e^-5	0.76	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
3R	13264400	3R_13264400_SNP [dm3] 3R_17438678_SNP [dm6]	A	T	5.049e^-5	0.76	DOWNSTREAM CG14331 INTRON CG5873
2R	8937744	2R_8937744_SNP [dm3] 2R_13050239_SNP [dm6]	G	A	5.094e^-5	0.76	UPSTREAM CG13324 INTERGENIC
X	3773410	X_3773410_SNP [dm3] X_3879377_SNP [dm6]	T	G	5.198e^-5	0.76	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	20623868	3R_20623868_SNP [dm3] 3R_24798146_SNP [dm6]	C	A	5.368e^-5	0.76	SYNONYMOUS_CODING Ude DOWNSTREAM Ets96B
3R	21622080	3R_21622080_SNP [dm3] 3R_25796358_SNP [dm6]	A	G	5.369e^-5	0.76	DOWNSTREAM CR43847 INTERGENIC
3L	9027559	3L_9027559_SNP [dm3] 3L_9034459_SNP [dm6]	T	C	5.448e^-5	0.76	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15705794	3L_15705794_SNP [dm3] 3L_15712694_SNP [dm6]	G	A	5.478e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	21622703	3R_21622703_SNP [dm3] 3R_25796981_SNP [dm6]	C	T	5.506e^-5	0.76	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15705819	3L_15705819_SNP [dm3] 3L_15712719_SNP [dm6]	G	C	5.531e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3R	2850893	3R_2850893_SNP [dm3] 3R_7025171_SNP [dm6]	T	C	5.549e^-5	0.76	INTERGENIC
X	20217266	X_20217266_INS [dm3] X_20346239_INS [dm6]	T	TTAT	5.554e^-5	0.76	INTERGENIC
3R	9782934	3R_9782934_SNP [dm3] 3R_13957212_SNP [dm6]	C	A	5.560e^-5	0.76	INTERGENIC
3L	13225024	3L_13225024_SNP [dm3] 3L_13231924_SNP [dm6]	T	A	5.565e^-5	0.76	INTRON caps
2R	19297361	2R_19297361_DEL [dm3] 2R_23409838_DEL [dm6]	TGGCAGTTATGCACTCGATC...	T	5.639e^-5	0.76	INTERGENIC
3R	10053106	3R_10053106_SNP [dm3] 3R_14227384_SNP [dm6]	T	C	5.642e^-5	0.76	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
2R	5980255	2R_5980255_SNP [dm3] 2R_10092750_SNP [dm6]	C	A	5.718e^-5	0.76	INTRON CG2269
2L	18068617	2L_18068617_SNP [dm3] 2L_18068617_SNP [dm6]	A	T	5.724e^-5	0.76	INTRON rdo
3L	7769557	3L_7769557_SNP [dm3] 3L_7776457_SNP [dm6]	G	T	5.764e^-5	0.76	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	23200488	3R_23200488_DEL [dm3] 3R_27374766_DEL [dm6]	ATGGGGGCTGGGCA...	A	5.790e^-5	0.76	DOWNSTREAM side INTERGENIC
3L	5045253	3L_5045253_SNP [dm3] 3L_5045253_SNP [dm6]	G	C	5.801e^-5	0.76	INTRON Con
X	16231614	X_16231614_SNP [dm3] X_16337581_SNP [dm6]	G	A	5.814e^-5	0.76	INTRON Dsp1	TF binding site mE1_TFBS_cad
3R	23293808	3R_23293808_SNP [dm3] 3R_27468086_SNP [dm6]	T	A	5.817e^-5	0.76	INTERGENIC
2L	13413724	2L_13413724_SNP [dm3] 2L_13413724_SNP [dm6]	T	G	5.858e^-5	0.76	DOWNSTREAM CG16956 & 1 other INTERGENIC
3R	20800398	3R_20800398_SNP [dm3] 3R_24974676_SNP [dm6]	A	T	5.878e^-5	0.76	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16230841	X_16230841_SNP [dm3] X_16336808_SNP [dm6]	C	T	5.880e^-5	0.76	INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9628720	3L_9628720_SNP [dm3] 3L_9635620_SNP [dm6]	G	C	5.902e^-5	0.76	INTRON fry
3L	9433527	3L_9433527_SNP [dm3] 3L_9440427_SNP [dm6]	A	C	6.030e^-5	0.76	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3
2R	19317305	2R_19317305_SNP [dm3] 2R_23429782_SNP [dm6]	G	A	6.034e^-5	0.76	INTRON CG9815
3L	4811585	3L_4811585_SNP [dm3] 3L_4811585_SNP [dm6]	C	A	6.048e^-5	0.76	SYNONYMOUS_CODING Dhc64C
2R	19523718	2R_19523718_SNP [dm3] 2R_23636195_SNP [dm6]	C	G	6.079e^-5	0.76	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15705836	3L_15705836_DEL [dm3] 3L_15712736_DEL [dm6]	AAAATTCC	A	6.129e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3L	15705845	3L_15705845_SNP [dm3] 3L_15712745_SNP [dm6]	T	G	6.129e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3R	9757578	3R_9757578_SNP [dm3] 3R_13931856_SNP [dm6]	T	C	6.164e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	3257605	2R_3257605_INS [dm3] 2R_7370100_INS [dm6]	T	TA	6.256e^-5	0.762	INTRON Dscam1
3L	12894853	3L_12894853_SNP [dm3] 3L_12901753_SNP [dm6]	G	C	6.272e^-5	0.762	SYNONYMOUS_CODING CG12520 UTR_3_PRIME CG12520
3L	9628802	3L_9628802_SNP [dm3] 3L_9635702_SNP [dm6]	C	T	6.372e^-5	0.762	SYNONYMOUS_CODING fry
3R	1819846	3R_1819846_SNP [dm3] 3R_5994124_SNP [dm6]	T	G	6.448e^-5	0.762	DOWNSTREAM CR44928 INTERGENIC
3L	8719789	3L_8719789_SNP [dm3] 3L_8726689_SNP [dm6]	G	C	6.490e^-5	0.762	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC	TF binding site mE1_TFBS_cad
3R	12689127	3R_12689127_SNP [dm3] 3R_16863405_SNP [dm6]	T	G	6.493e^-5	0.762	INTRON iab-8
2L	12398246	2L_12398246_SNP [dm3] 2L_12398246_SNP [dm6]	T	A	6.549e^-5	0.762	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	8937563	2R_8937563_SNP [dm3] 2R_13050058_SNP [dm6]	G	A	6.572e^-5	0.762	UPSTREAM CG13324 INTERGENIC
2R	19716927	2R_19716927_SNP [dm3] 2R_23829404_SNP [dm6]	A	G	6.576e^-5	0.762	INTRON CG5549
2L	15505122	2L_15505122_SNP [dm3] 2L_15505122_SNP [dm6]	C	T	6.583e^-5	0.762	DOWNSTREAM lace INTERGENIC
X	4315147	X_4315147_SNP [dm3] X_4421114_SNP [dm6]	C	A	6.679e^-5	0.764	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	6494423	3R_6494423_SNP [dm3] 3R_10668701_SNP [dm6]	C	T	6.724e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18508137	2L_18508137_DEL [dm3] 2L_18508137_DEL [dm6]	CA	C	6.728e^-5	0.764	INTERGENIC
2L	9341977	2L_9341977_SNP [dm3] 2L_9341977_SNP [dm6]	A	T	6.977e^-5	0.784	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2L	6202974	2L_6202974_SNP [dm3] 2L_6202974_SNP [dm6]	C	A	7.014e^-5	0.784	INTRON CG34380	TF binding site mE1_TFBS_chinmo
X	9846601	X_9846601_SNP [dm3] X_9952568_SNP [dm6]	T	C	7.123e^-5	0.784	INTERGENIC
2L	6855962	2L_6855962_SNP [dm3] 2L_6855962_SNP [dm6]	T	A	7.152e^-5	0.784	NON_SYNONYMOUS_CODING l_2_k09022
3R	6440408	3R_6440408_SNP [dm3] 3R_10614686_SNP [dm6]	C	G	7.165e^-5	0.784	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5699373	3R_5699373_SNP [dm3] 3R_9873651_SNP [dm6]	G	C	7.192e^-5	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22942163	3R_22942163_SNP [dm3] 3R_27116441_SNP [dm6]	G	A	7.196e^-5	0.784	NON_SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23870788	3R_23870788_DEL [dm3] 3R_28045066_DEL [dm6]	AA	A	7.246e^-5	0.785	INTRON CG34362
3L	12902327	3L_12902327_SNP [dm3] 3L_12909227_SNP [dm6]	A	T	7.407e^-5	0.789	INTERGENIC
3L	15082442	3L_15082442_SNP [dm3] 3L_15089342_SNP [dm6]	A	T	7.416e^-5	0.789	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl
2L	908108	2L_908108_SNP [dm3] 2L_908108_SNP [dm6]	G	A	7.444e^-5	0.789	INTERGENIC
3L	15492502	3L_15492502_SNP [dm3] 3L_15499402_SNP [dm6]	G	A	7.451e^-5	0.789	SYNONYMOUS_CODING CG7275 DOWNSTREAM CG7276	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5287989	3L_5287989_SNP [dm3] 3L_5294889_SNP [dm6]	T	C	7.531e^-5	0.789	INTERGENIC
2L	13146448	2L_13146448_SNP [dm3] 2L_13146448_SNP [dm6]	G	A	7.544e^-5	0.789	UPSTREAM CR44199 INTERGENIC
2R	6223535	2R_6223535_SNP [dm3] 2R_10336030_SNP [dm6]	A	T	7.703e^-5	0.789	INTRON CG42732
3L	22101898	3L_22101898_SNP [dm3] 3L_22108798_SNP [dm6]	T	A	7.720e^-5	0.789	INTERGENIC
X	15275732	X_15275732_SNP [dm3] X_15381699_SNP [dm6]	T	A	7.957e^-5	0.789	INTRON CG9164
3L	19936169	3L_19936169_SNP [dm3] 3L_19943069_SNP [dm6]	A	T	8.028e^-5	0.789	INTRON Ac76E
X	16516157	X_16516157_SNP [dm3] X_16622124_SNP [dm6]	G	C	8.152e^-5	0.789	UPSTREAM CG9782 INTERGENIC
3L	15684824	3L_15684824_SNP [dm3] 3L_15691724_SNP [dm6]	T	A	8.235e^-5	0.789	SYNONYMOUS_CODING CG34451 UTR_5_PRIME CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6455818	3R_6455818_SNP [dm3] 3R_10630096_SNP [dm6]	G	C	8.279e^-5	0.789	INTRON hth	TF binding site mE1_TFBS_cad
2R	18132331	2R_18132331_SNP [dm3] 2R_22244826_SNP [dm6]	A	C	8.315e^-5	0.789	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4387582	X_4387582_SNP [dm3] X_4493549_SNP [dm6]	T	A	8.426e^-5	0.789	INTRON CR32773
2R	6221719	2R_6221719_SNP [dm3] 2R_10334214_SNP [dm6]	C	T	8.446e^-5	0.789	INTRON CG42732
2L	1165446	2L_1165446_SNP [dm3] 2L_1165446_SNP [dm6]	C	G	8.500e^-5	0.789	SYNONYMOUS_CODING IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2276058	2L_2276058_SNP [dm3] 2L_2276058_SNP [dm6]	T	A	8.524e^-5	0.789	INTRON CR43753 EXON CR43753
3L	4890283	3L_4890283_SNP [dm3] 3L_4890283_SNP [dm6]	T	C	8.738e^-5	0.789	INTRON CG17150
3R	13264366	3R_13264366_SNP [dm3] 3R_17438644_SNP [dm6]	A	T	8.830e^-5	0.789	DOWNSTREAM CG14331 INTRON CG5873
2R	14947228	2R_14947228_SNP [dm3] 2R_19059723_SNP [dm6]	G	C	8.900e^-5	0.789	UTR_5_PRIME CG15109 INTRON CG15109
3L	9940377	3L_9940377_SNP [dm3] 3L_9947277_SNP [dm6]	T	G	8.936e^-5	0.789	INTRON CG34356
2L	15505113	2L_15505113_SNP [dm3] 2L_15505113_SNP [dm6]	A	G	8.946e^-5	0.789	DOWNSTREAM lace INTERGENIC
3L	15705828	3L_15705828_SNP [dm3] 3L_15712728_SNP [dm6]	T	C	8.985e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3L	9027662	3L_9027662_SNP [dm3] 3L_9034562_SNP [dm6]	C	G	9.004e^-5	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11980427	2R_11980427_SNP [dm3] 2R_16092922_SNP [dm6]	A	G	9.079e^-5	0.789	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2R	6219544	2R_6219544_SNP [dm3] 2R_10332039_SNP [dm6]	T	C	9.108e^-5	0.789	INTRON CG42732
2R	6220600	2R_6220600_SNP [dm3] 2R_10333095_SNP [dm6]	A	T	9.108e^-5	0.789	INTRON CG42732
2R	8939162	2R_8939162_SNP [dm3] 2R_13051657_SNP [dm6]	C	T	9.126e^-5	0.789	INTERGENIC
X	15529607	X_15529607_SNP [dm3] X_15635574_SNP [dm6]	G	A	9.165e^-5	0.789	UPSTREAM CR44423 INTERGENIC
2R	16764360	2R_16764360_SNP [dm3] 2R_20876855_SNP [dm6]	C	A	9.190e^-5	0.789	INTRON Ipk1
2R	17761955	2R_17761955_SNP [dm3] 2R_21874450_SNP [dm6]	A	T	9.209e^-5	0.789	INTRON Fili	TF binding site BDTNP1_TFBS_da
3L	15705818	3L_15705818_SNP [dm3] 3L_15712718_SNP [dm6]	T	C	9.253e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3L	16018928	3L_16018928_SNP [dm3] 3L_16025828_SNP [dm6]	T	G	9.275e^-5	0.789	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	6405090	3R_6405090_SNP [dm3] 3R_10579368_SNP [dm6]	C	T	9.289e^-5	0.789	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19894518	2R_19894518_SNP [dm3] 2R_24006995_SNP [dm6]	G	A	9.339e^-5	0.789	INTRON Unc-89	TF binding site mE1_TFBS_cad
X	5583955	X_5583955_SNP [dm3] X_5689922_SNP [dm6]	G	A	9.374e^-5	0.789	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24169278	3R_24169278_SNP [dm3] 3R_28343556_SNP [dm6]	T	C	9.412e^-5	0.789	NON_SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad
X	5583569	X_5583569_SNP [dm3] X_5689536_SNP [dm6]	T	C	9.433e^-5	0.789	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	5583854	X_5583854_SNP [dm3] X_5689821_SNP [dm6]	T	A	9.433e^-5	0.789	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24955252	3R_24955252_SNP [dm3] 3R_29129530_SNP [dm6]	G	A	9.453e^-5	0.789	SPLICE_SITE_REGION dgt6 SYNONYMOUS_CODING dgt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4752452	3L_4752452_SNP [dm3] 3L_4752452_SNP [dm6]	A	C	9.463e^-5	0.789	UTR_3_PRIME CG12493 INTRON RhoGEF64C
2L	18075115	2L_18075115_SNP [dm3] 2L_18075115_SNP [dm6]	G	A	9.473e^-5	0.789	INTERGENIC
X	10061471	X_10061471_SNP [dm3] X_10167438_SNP [dm6]	C	A	9.491e^-5	0.789	INTRON CR44894 & 1 other
2L	21008798	2L_21008798_DEL [dm3] 2L_21008798_DEL [dm6]	AA	A	9.521e^-5	0.789	INTRON CG42238
2L	6565476	2L_6565476_SNP [dm3] 2L_6565476_SNP [dm6]	T	G	9.585e^-5	0.789	SYNONYMOUS_CODING CG13766 DOWNSTREAM Ent2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13221422	X_13221422_SNP [dm3] X_13327389_SNP [dm6]	G	A	9.588e^-5	0.789	SYNONYMOUS_CODING IP3K2
3L	2660856	3L_2660856_SNP [dm3] 3L_2660856_SNP [dm6]	T	C	9.629e^-5	0.789	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	13279601	3R_13279601_SNP [dm3] 3R_17453879_SNP [dm6]	C	T	9.853e^-5	0.789	INTERGENIC
3R	9233540	3R_9233540_SNP [dm3] 3R_13407818_SNP [dm6]	A	G	9.858e^-5	0.789	UPSTREAM yellow-e2 INTERGENIC
2L	18075085	2L_18075085_SNP [dm3] 2L_18075085_SNP [dm6]	C	A	9.866e^-5	0.789	INTERGENIC
3L	16231086	3L_16231086_SNP [dm3] 3L_16237986_SNP [dm6]	C	A	9.870e^-5	0.789	DOWNSTREAM l_3_72Dp INTRON l_3_72Dr
2R	6225067	2R_6225067_SNP [dm3] 2R_10337562_SNP [dm6]	A	G	9.963e^-5	0.789	INTRON CG42732
3R	5695353	3R_5695353_SNP [dm3] 3R_9869631_SNP [dm6]	T	G	1.001e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19716919	2R_19716919_SNP [dm3] 2R_23829396_SNP [dm6]	A	C	1.004e^-4	0.789	INTRON CG5549
3L	10713128	3L_10713128_SNP [dm3] 3L_10720028_SNP [dm6]	T	C	1.006e^-4	0.789	INTERGENIC
3R	1965227	3R_1965227_SNP [dm3] 3R_6139505_SNP [dm6]	A	G	1.018e^-4	0.789	INTERGENIC
2R	10580187	2R_10580187_DEL [dm3] 2R_14692682_DEL [dm6]	AA	A	1.020e^-4	0.789	INTRON mspo
3R	11920319	3R_11920319_INS [dm3] 3R_16094597_INS [dm6]	T	TG	1.028e^-4	0.789	UPSTREAM Mhcl INTRON Mhcl
3R	24967299	3R_24967299_SNP [dm3] 3R_29141577_SNP [dm6]	T	C	1.028e^-4	0.789	INTRON CG14516
3L	10712957	3L_10712957_DEL [dm3] 3L_10719857_DEL [dm6]	TT	T	1.029e^-4	0.789	INTERGENIC
X	5583785	X_5583785_SNP [dm3] X_5689752_SNP [dm6]	G	A	1.031e^-4	0.789	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6272257	2L_6272257_SNP [dm3] 2L_6272257_SNP [dm6]	C	A	1.038e^-4	0.789	DOWNSTREAM CR42735 INTRON Ddr
3L	11823466	3L_11823466_SNP [dm3] 3L_11830366_SNP [dm6]	A	G	1.045e^-4	0.789	SYNONYMOUS_CODING CG7264 INTRON CycA	TF binding site mE1_TFBS_sens
2R	8937386	2R_8937386_SNP [dm3] 2R_13049881_SNP [dm6]	G	A	1.054e^-4	0.789	UPSTREAM CG13324 INTERGENIC
3L	16529824	3L_16529824_SNP [dm3] 3L_16536724_SNP [dm6]	T	C	1.054e^-4	0.789	INTRON CG43373
3L	10457100	3L_10457100_SNP [dm3] 3L_10464000_SNP [dm6]	C	T	1.056e^-4	0.789	SYNONYMOUS_CODING CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
3L	15705700	3L_15705700_SNP [dm3] 3L_15712600_SNP [dm6]	T	C	1.062e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	13146424	2L_13146424_SNP [dm3] 2L_13146424_SNP [dm6]	T	A	1.063e^-4	0.789	UPSTREAM CR44199 INTERGENIC
2R	10580283	2R_10580283_SNP [dm3] 2R_14692778_SNP [dm6]	T	C	1.067e^-4	0.789	INTRON mspo
3L	15705822	3L_15705822_DEL [dm3] 3L_15712722_DEL [dm6]	AGGTG	A	1.069e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3L	2283519	3L_2283519_SNP [dm3] 3L_2283519_SNP [dm6]	G	T	1.070e^-4	0.789	INTRON MsR2
2L	15990308	2L_15990308_SNP [dm3] 2L_15990308_SNP [dm6]	C	T	1.071e^-4	0.789	DOWNSTREAM CR43412 INTERGENIC
X	10505725	X_10505725_SNP [dm3] X_10611692_SNP [dm6]	A	G	1.075e^-4	0.789	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
3L	2673315	3L_2673315_SNP [dm3] 3L_2673315_SNP [dm6]	A	G	1.091e^-4	0.789	INTRON Fife
3L	11432916	3L_11432916_SNP [dm3] 3L_11439816_SNP [dm6]	T	A	1.093e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18658023	3R_18658023_SNP [dm3] 3R_22832301_SNP [dm6]	T	A	1.093e^-4	0.789	INTERGENIC
3L	5782878	3L_5782878_SNP [dm3] 3L_5789778_SNP [dm6]	T	G	1.095e^-4	0.789	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6190764	2R_6190764_SNP [dm3] 2R_10303259_SNP [dm6]	G	A	1.101e^-4	0.789	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19523741	2R_19523741_INS [dm3] 2R_23636218_INS [dm6]	A	ACGTCA	1.103e^-4	0.789	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20736087	X_20736087_DEL [dm3] X_20865060_DEL [dm6]	TGTGCGTGT	T	1.105e^-4	0.789	UTR_5_PRIME CG43193 INTRON shakB
3L	5044777	3L_5044777_SNP [dm3] 3L_5044777_SNP [dm6]	T	C	1.113e^-4	0.789	INTRON Con
3L	15705833	3L_15705833_SNP [dm3] 3L_15712733_SNP [dm6]	C	A	1.124e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
2R	10678470	2R_10678470_SNP [dm3] 2R_14790965_SNP [dm6]	G	A	1.127e^-4	0.789	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17713037	2L_17713037_SNP [dm3] 2L_17713037_SNP [dm6]	G	C	1.129e^-4	0.789	INTRON CadN
3L	11432927	3L_11432927_SNP [dm3] 3L_11439827_SNP [dm6]	G	C	1.132e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17150092	3L_17150092_SNP [dm3] 3L_17156992_SNP [dm6]	G	A	1.133e^-4	0.789	INTRON Rbp6
3R	8103936	3R_8103936_SNP [dm3] 3R_12278214_SNP [dm6]	C	T	1.133e^-4	0.789	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2713068	3L_2713068_SNP [dm3] 3L_2713068_SNP [dm6]	C	T	1.139e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10580300	2R_10580300_DEL [dm3] 2R_14692795_DEL [dm6]	TTATATATGT	T	1.147e^-4	0.789	INTRON mspo
3L	4886586	3L_4886586_DEL [dm3] 3L_4886586_DEL [dm6]	TCCTGAGT	T	1.147e^-4	0.789	INTRON CG17150
3L	2672010	3L_2672010_SNP [dm3] 3L_2672010_SNP [dm6]	G	A	1.152e^-4	0.789	UTR_3_PRIME Fife INTRON Fife
3R	8935804	3R_8935804_SNP [dm3] 3R_13110082_SNP [dm6]	T	C	1.153e^-4	0.789	INTRON timeout
3L	10665280	3L_10665280_SNP [dm3] 3L_10672180_SNP [dm6]	C	G	1.164e^-4	0.789	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9983616	2L_9983616_SNP [dm3] 2L_9983616_SNP [dm6]	A	G	1.173e^-4	0.789	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21684927	3R_21684927_SNP [dm3] 3R_25859205_SNP [dm6]	T	G	1.186e^-4	0.789	INTRON CG5890
X	10790922	X_10790922_SNP [dm3] X_10896889_SNP [dm6]	G	T	1.195e^-4	0.789	INTRON CG1582	TF binding site mE1_TFBS_sens
2L	2522233	2L_2522233_SNP [dm3] 2L_2522233_SNP [dm6]	A	T	1.201e^-4	0.789	INTERGENIC
X	5604059	X_5604059_SNP [dm3] X_5710026_SNP [dm6]	G	A	1.209e^-4	0.789	SYNONYMOUS_CODING CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17597604	2R_17597604_SNP [dm3] 2R_21710099_SNP [dm6]	C	T	1.216e^-4	0.789	UTR_3_PRIME CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24967297	3R_24967297_SNP [dm3] 3R_29141575_SNP [dm6]	C	T	1.217e^-4	0.789	INTRON CG14516
3R	8103958	3R_8103958_SNP [dm3] 3R_12278236_SNP [dm6]	G	T	1.220e^-4	0.789	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	4398174	X_4398174_SNP [dm3] X_4504141_SNP [dm6]	C	T	1.224e^-4	0.789	INTRON CR32773
3L	2411787	3L_2411787_SNP [dm3] 3L_2411787_SNP [dm6]	T	A	1.232e^-4	0.789	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6565383	2L_6565383_SNP [dm3] 2L_6565383_SNP [dm6]	A	G	1.233e^-4	0.789	SYNONYMOUS_CODING CG13766 DOWNSTREAM Ent2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	9822059	3L_9822059_SNP [dm3] 3L_9828959_SNP [dm6]	A	T	1.243e^-4	0.789	UPSTREAM CG43897 INTRON CG43897
3L	15030424	3L_15030424_SNP [dm3] 3L_15037324_SNP [dm6]	A	T	1.248e^-4	0.789	INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9432844	3L_9432844_INS [dm3] 3L_9439744_INS [dm6]	T	TGT	1.250e^-4	0.789	DOWNSTREAM Nf-YA & 1 other INTRON Bet3
2R	8410896	2R_8410896_SNP [dm3] 2R_12523391_SNP [dm6]	C	G	1.262e^-4	0.789	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14164762	2R_14164762_SNP [dm3] 2R_18277257_SNP [dm6]	G	A	1.269e^-4	0.789	UPSTREAM pen-2 & 1 other DOWNSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	13413769	2L_13413769_SNP [dm3] 2L_13413769_SNP [dm6]	G	T	1.273e^-4	0.789	DOWNSTREAM CG16956 & 1 other INTERGENIC
X	3810690	X_3810690_SNP [dm3] X_3916657_SNP [dm6]	A	C	1.274e^-4	0.789	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6212326	2R_6212326_SNP [dm3] 2R_10324821_SNP [dm6]	C	G	1.277e^-4	0.789	INTRON CG42732
X	5583701	X_5583701_SNP [dm3] X_5689668_SNP [dm6]	G	A	1.280e^-4	0.789	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	26158125	3R_26158125_SNP [dm3] 3R_30332403_SNP [dm6]	C	A	1.285e^-4	0.789	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	6218522	2R_6218522_SNP [dm3] 2R_10331017_SNP [dm6]	G	A	1.292e^-4	0.789	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12500344	3L_12500344_SNP [dm3] 3L_12507244_SNP [dm6]	G	A	1.292e^-4	0.789	NON_SYNONYMOUS_CODING CG10654 DOWNSTREAM sti	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12334462	X_12334462_DEL [dm3] X_12440429_DEL [dm6]	GCAGTCTTTTATTTTTGTTA...	G	1.298e^-4	0.789	INTRON Pkcdelta
3R	8932696	3R_8932696_SNP [dm3] 3R_13106974_SNP [dm6]	A	G	1.309e^-4	0.789	INTRON timeout
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	1.311e^-4	0.789	INTRON CG18769 & 1 other
3R	23161659	3R_23161659_SNP [dm3] 3R_27335937_SNP [dm6]	A	G	1.319e^-4	0.789	INTERGENIC
X	16918885	X_16918885_SNP [dm3] X_17024852_SNP [dm6]	G	A	1.325e^-4	0.789	DOWNSTREAM CG43997 INTRON CG45002
2R	3255522	2R_3255522_SNP [dm3] 2R_7368017_SNP [dm6]	C	T	1.327e^-4	0.789	INTRON Dscam1
3L	15703243	3L_15703243_SNP [dm3] 3L_15710143_SNP [dm6]	C	T	1.342e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6958412	3R_6958412_SNP [dm3] 3R_11132690_SNP [dm6]	T	G	1.346e^-4	0.789	INTERGENIC
3L	15081132	3L_15081132_INS [dm3] 3L_15088032_INS [dm6]	T	TTATTTGATTT...	1.354e^-4	0.789	INTRON cp309
3L	7283097	3L_7283097_SNP [dm3] 3L_7289997_SNP [dm6]	G	C	1.359e^-4	0.789	INTRON unc-13-4A
2L	18075119	2L_18075119_DEL [dm3] 2L_18075119_DEL [dm6]	TTAA	T	1.360e^-4	0.789	INTERGENIC
3R	25021383	3R_25021383_SNP [dm3] 3R_29195661_SNP [dm6]	C	G	1.365e^-4	0.789	UPSTREAM CG14509 INTERGENIC
3R	25377335	3R_25377335_SNP [dm3] 3R_29551613_SNP [dm6]	T	C	1.367e^-4	0.789	INTERGENIC
2L	6568477	2L_6568477_SNP [dm3] 2L_6568477_SNP [dm6]	G	A	1.378e^-4	0.789	UTR_3_PRIME CG11319
3R	9876509	3R_9876509_SNP [dm3] 3R_14050787_SNP [dm6]	G	A	1.379e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10580248	2R_10580248_SNP [dm3] 2R_14692743_SNP [dm6]	T	C	1.382e^-4	0.789	INTRON mspo
3L	10713201	3L_10713201_SNP [dm3] 3L_10720101_SNP [dm6]	A	G	1.396e^-4	0.789	INTERGENIC
3R	16063686	3R_16063686_SNP [dm3] 3R_20237964_SNP [dm6]	G	A	1.397e^-4	0.789	SYNONYMOUS_CODING Nlg4
2L	18938096	2L_18938096_SNP [dm3] 2L_18938096_SNP [dm6]	A	C	1.410e^-4	0.789	INTRON ssp3
2R	12356219	2R_12356219_SNP [dm3] 2R_16468714_SNP [dm6]	T	C	1.410e^-4	0.789	INTRON CheB53b
3L	22331882	3L_22331882_SNP [dm3] 3L_22338782_SNP [dm6]	T	G	1.412e^-4	0.789	INTRON Ten-m
3L	7114734	3L_7114734_SNP [dm3] 3L_7121634_SNP [dm6]	G	A	1.417e^-4	0.789	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6190992	2R_6190992_SNP [dm3] 2R_10303487_SNP [dm6]	G	T	1.427e^-4	0.789	START_GAINED CAP UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_Trl
2L	9342168	2L_9342168_SNP [dm3] 2L_9342168_SNP [dm6]	A	T	1.428e^-4	0.789	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3L	8378399	3L_8378399_SNP [dm3] 3L_8385299_SNP [dm6]	A	C	1.441e^-4	0.789	INTRON ImpE1
3R	23529664	3R_23529664_SNP [dm3] 3R_27703942_SNP [dm6]	A	G	1.442e^-4	0.789	SYNONYMOUS_CODING CG12428 DOWNSTREAM btz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11432923	3L_11432923_SNP [dm3] 3L_11439823_SNP [dm6]	G	A	1.443e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10713186	3L_10713186_SNP [dm3] 3L_10720086_SNP [dm6]	A	T	1.453e^-4	0.789	INTERGENIC
3R	13489923	3R_13489923_SNP [dm3] 3R_17664201_SNP [dm6]	C	A	1.456e^-4	0.789	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9341963	2L_9341963_SNP [dm3] 2L_9341963_SNP [dm6]	A	C	1.457e^-4	0.789	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3R	11853566	3R_11853566_SNP [dm3] 3R_16027844_SNP [dm6]	T	A	1.457e^-4	0.789	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3R	23528825	3R_23528825_INS [dm3] 3R_27703103_INS [dm6]	A	ACGA	1.460e^-4	0.789	UTR_3_PRIME btz DOWNSTREAM CG12428	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16231046	3L_16231046_SNP [dm3] 3L_16237946_SNP [dm6]	A	C	1.461e^-4	0.789	DOWNSTREAM l_3_72Dp INTRON l_3_72Dr
2R	16765891	2R_16765891_SNP [dm3] 2R_20878386_SNP [dm6]	C	A	1.465e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	9127121	2R_9127121_SNP [dm3] 2R_13239616_SNP [dm6]	A	C	1.468e^-4	0.789	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11980049	2R_11980049_SNP [dm3] 2R_16092544_SNP [dm6]	G	T	1.471e^-4	0.789	INTRON Dg
3L	6656004	3L_6656004_SNP [dm3] 3L_6662904_SNP [dm6]	C	G	1.476e^-4	0.789	INTERGENIC
3L	9432779	3L_9432779_SNP [dm3] 3L_9439679_SNP [dm6]	C	A	1.476e^-4	0.789	DOWNSTREAM MTF-1 & 1 other INTRON Bet3
2L	559474	2L_559474_SNP [dm3] 2L_559474_SNP [dm6]	T	G	1.480e^-4	0.789	UPSTREAM CG2789 & 1 other INTRON rempA	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	16765913	2R_16765913_SNP [dm3] 2R_20878408_SNP [dm6]	T	G	1.481e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	16765914	2R_16765914_SNP [dm3] 2R_20878409_SNP [dm6]	T	A	1.481e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	16765918	2R_16765918_DEL [dm3] 2R_20878413_DEL [dm6]	TG	T	1.481e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	16765929	2R_16765929_DEL [dm3] 2R_20878424_DEL [dm6]	GGT	A	1.481e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	16765934	2R_16765934_SNP [dm3] 2R_20878429_SNP [dm6]	T	G	1.481e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
3L	3734043	3L_3734043_DEL [dm3] 3L_3734043_DEL [dm6]	CC	C	1.483e^-4	0.789	INTRON CG32264
3R	24169320	3R_24169320_SNP [dm3] 3R_28343598_SNP [dm6]	G	A	1.487e^-4	0.789	NON_SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad
2L	559444	2L_559444_SNP [dm3] 2L_559444_SNP [dm6]	T	A	1.493e^-4	0.789	UPSTREAM CG2789 & 1 other INTRON rempA	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	18088749	2L_18088749_SNP [dm3] 2L_18088749_SNP [dm6]	C	T	1.508e^-4	0.789	INTERGENIC
X	9425177	X_9425177_DEL [dm3] X_9531144_DEL [dm6]	AA	A	1.508e^-4	0.789	INTRON CG32700
3L	2283520	3L_2283520_SNP [dm3] 3L_2283520_SNP [dm6]	T	A	1.511e^-4	0.789	INTRON MsR2
X	21958288	X_21958288_DEL [dm3] X_22556452_DEL [dm6]	TA	C	1.515e^-4	0.789	INTERGENIC
2L	7083196	2L_7083196_SNP [dm3] 2L_7083196_SNP [dm6]	G	T	1.516e^-4	0.789	NON_SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad
2R	19282918	2R_19282918_SNP [dm3] 2R_23395395_SNP [dm6]	T	C	1.520e^-4	0.789	UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_Trl
2L	9983637	2L_9983637_SNP [dm3] 2L_9983637_SNP [dm6]	A	G	1.522e^-4	0.789	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	8082348	3R_8082348_SNP [dm3] 3R_12256626_SNP [dm6]	G	A	1.523e^-4	0.789	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Kr mE1_TFBS_sens
2L	18075070	2L_18075070_SNP [dm3] 2L_18075070_SNP [dm6]	A	C	1.529e^-4	0.789	INTERGENIC
3R	1965217	3R_1965217_SNP [dm3] 3R_6139495_SNP [dm6]	T	G	1.534e^-4	0.789	INTERGENIC
2R	16495824	2R_16495824_SNP [dm3] 2R_20608319_SNP [dm6]	G	A	1.535e^-4	0.789	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11980151	2R_11980151_INS [dm3] 2R_16092646_INS [dm6]	T	TATGCAAGGATT...	1.538e^-4	0.789	INTRON Dg
3L	13557555	3L_13557555_SNP [dm3] 3L_13564455_SNP [dm6]	T	G	1.546e^-4	0.789	INTRON bru-3
2L	4131733	2L_4131733_SNP [dm3] 2L_4131733_SNP [dm6]	G	C	1.550e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11331376	3R_11331376_SNP [dm3] 3R_15505654_SNP [dm6]	G	A	1.551e^-4	0.789	INTERGENIC
X	9846618	X_9846618_SNP [dm3] X_9952585_SNP [dm6]	A	T	1.555e^-4	0.789	INTERGENIC
2L	8872992	2L_8872992_SNP [dm3] 2L_8872992_SNP [dm6]	A	G	1.561e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2767411	3L_2767411_SNP [dm3] 3L_2767411_SNP [dm6]	G	A	1.566e^-4	0.789	SYNONYMOUS_CODING CG1240 UPSTREAM Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15868377	2L_15868377_SNP [dm3] 2L_15868377_SNP [dm6]	A	G	1.568e^-4	0.789	INTERGENIC
2R	17763505	2R_17763505_SNP [dm3] 2R_21876000_SNP [dm6]	C	G	1.569e^-4	0.789	INTRON Fili
2L	2278091	2L_2278091_SNP [dm3] 2L_2278091_SNP [dm6]	T	C	1.577e^-4	0.789	DOWNSTREAM CR43753 INTRON CR43753
2R	10580274	2R_10580274_SNP [dm3] 2R_14692769_SNP [dm6]	G	A	1.577e^-4	0.789	INTRON mspo
3R	18657990	3R_18657990_SNP [dm3] 3R_22832268_SNP [dm6]	A	T	1.578e^-4	0.789	INTERGENIC
3R	11181100	3R_11181100_SNP [dm3] 3R_15355378_SNP [dm6]	G	A	1.581e^-4	0.789	INTRON Atg4b	TF binding site mE1_TFBS_chinmo
3L	4130019	3L_4130019_SNP [dm3] 3L_4130019_SNP [dm6]	T	C	1.582e^-4	0.789	INTRON ens
2L	8889739	2L_8889739_SNP [dm3] 2L_8889739_SNP [dm6]	C	T	1.583e^-4	0.789	INTERGENIC
3L	15666690	3L_15666690_SNP [dm3] 3L_15673590_SNP [dm6]	T	C	1.583e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	18075118	2L_18075118_SNP [dm3] 2L_18075118_SNP [dm6]	C	T	1.589e^-4	0.789	INTERGENIC
X	20762698	X_20762698_SNP [dm3] X_20891671_SNP [dm6]	G	T	1.597e^-4	0.789	INTRON shakB
3R	19412565	3R_19412565_SNP [dm3] 3R_23586843_SNP [dm6]	T	G	1.608e^-4	0.789	DOWNSTREAM CG10182 INTERGENIC
3L	14563999	3L_14563999_INS [dm3] 3L_14570899_INS [dm6]	A	ACTCAATACAATATA...	1.609e^-4	0.789	INTERGENIC
3L	2411767	3L_2411767_SNP [dm3] 3L_2411767_SNP [dm6]	T	A	1.611e^-4	0.789	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2107127	3L_2107127_SNP [dm3] 3L_2107127_SNP [dm6]	T	A	1.615e^-4	0.789	INTRON sls
3R	13471140	3R_13471140_SNP [dm3] 3R_17645418_SNP [dm6]	C	G	1.615e^-4	0.789	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site mE1_TFBS_cad
2R	3221687	2R_3221687_SNP [dm3] 2R_7334182_SNP [dm6]	G	T	1.618e^-4	0.789	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
3R	27275467	3R_27275467_SNP [dm3] 3R_31449745_SNP [dm6]	C	A	1.620e^-4	0.789	INTRON Gprk2
3L	14486217	3L_14486217_SNP [dm3] 3L_14493117_SNP [dm6]	T	C	1.625e^-4	0.789	INTRON bbg
2R	11490919	2R_11490919_SNP [dm3] 2R_15603414_SNP [dm6]	C	A	1.628e^-4	0.789	INTERGENIC
2L	3490703	2L_3490703_SNP [dm3] 2L_3490703_SNP [dm6]	A	T	1.628e^-4	0.789	INTRON CG15414
X	14090128	X_14090128_SNP [dm3] X_14196095_SNP [dm6]	A	G	1.628e^-4	0.789	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	7195683	X_7195683_SNP [dm3] X_7301650_SNP [dm6]	G	A	1.629e^-4	0.789	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11067574	2R_11067574_SNP [dm3] 2R_15180069_SNP [dm6]	T	A	1.632e^-4	0.789	INTRON igl
2R	19893603	2R_19893603_SNP [dm3] 2R_24006080_SNP [dm6]	T	C	1.633e^-4	0.789	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2411779	3L_2411779_SNP [dm3] 3L_2411779_SNP [dm6]	C	T	1.634e^-4	0.789	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14696650	2R_14696650_SNP [dm3] 2R_18809145_SNP [dm6]	G	A	1.639e^-4	0.789	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27287593	3R_27287593_SNP [dm3] 3R_31461871_SNP [dm6]	T	C	1.644e^-4	0.789	SYNONYMOUS_CODING CG11334	TF binding site mE1_TFBS_sens
3R	27145759	3R_27145759_SNP [dm3] 3R_31320037_SNP [dm6]	A	T	1.647e^-4	0.789	INTRON CG34347
3R	10284827	3R_10284827_SNP [dm3] 3R_14459105_SNP [dm6]	A	G	1.650e^-4	0.789	INTRON cv-c
2R	11980052	2R_11980052_SNP [dm3] 2R_16092547_SNP [dm6]	C	G	1.659e^-4	0.789	INTRON Dg
3L	9432710	3L_9432710_SNP [dm3] 3L_9439610_SNP [dm6]	G	T	1.660e^-4	0.789	DOWNSTREAM MTF-1 & 1 other INTRON Bet3
X	10790910	X_10790910_SNP [dm3] X_10896877_SNP [dm6]	G	C	1.660e^-4	0.789	SPLICE_SITE_REGION CG1582 INTRON CG1582	TF binding site mE1_TFBS_sens
3L	14564827	3L_14564827_SNP [dm3] 3L_14571727_SNP [dm6]	G	C	1.665e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15146868	2L_15146868_SNP [dm3] 2L_15146868_SNP [dm6]	T	G	1.665e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10103332	2R_10103332_SNP [dm3] 2R_14215827_SNP [dm6]	A	G	1.679e^-4	0.789	UPSTREAM mir-308 INTRON RpS23 EXON mir-308	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	3257770	2R_3257770_SNP [dm3] 2R_7370265_SNP [dm6]	A	T	1.685e^-4	0.789	INTRON Dscam1	regulatory region REDfly_CRMs
3L	18353142	3L_18353142_SNP [dm3] 3L_18360042_SNP [dm6]	A	G	1.692e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
X	15273255	X_15273255_SNP [dm3] X_15379222_SNP [dm6]	T	C	1.693e^-4	0.789	UPSTREAM acj6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15488663	3L_15488663_SNP [dm3] 3L_15495563_SNP [dm6]	C	T	1.696e^-4	0.789	UPSTREAM CG12355 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13146428	2L_13146428_SNP [dm3] 2L_13146428_SNP [dm6]	T	A	1.702e^-4	0.789	UPSTREAM CR44199 INTERGENIC
3L	9027554	3L_9027554_SNP [dm3] 3L_9034454_SNP [dm6]	T	G	1.704e^-4	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18085072	2L_18085072_SNP [dm3] 2L_18085072_SNP [dm6]	C	G	1.706e^-4	0.789	NON_SYNONYMOUS_CODING CG31741	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18068586	2L_18068586_SNP [dm3] 2L_18068586_SNP [dm6]	G	A	1.708e^-4	0.789	INTRON rdo
3L	22631373	3L_22631373_SNP [dm3] 3L_22638273_SNP [dm6]	T	C	1.711e^-4	0.789	UPSTREAM CG14459 INTERGENIC
2R	3262135	2R_3262135_SNP [dm3] 2R_7374630_SNP [dm6]	A	G	1.711e^-4	0.789	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16765917	2R_16765917_SNP [dm3] 2R_20878412_SNP [dm6]	T	G	1.712e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	15279016	2R_15279016_SNP [dm3] 2R_19391511_SNP [dm6]	C	T	1.722e^-4	0.789	DOWNSTREAM SdhA INTRON CG11257
3L	2628817	3L_2628817_SNP [dm3] 3L_2628817_SNP [dm6]	G	A	1.724e^-4	0.789	INTRON Pxn
3R	3902687	3R_3902687_SNP [dm3] 3R_8076965_SNP [dm6]	T	C	1.725e^-4	0.789	INTRON mAChR-B	TF binding site mE1_TFBS_HSA
3L	3632619	3L_3632619_SNP [dm3] 3L_3632619_SNP [dm6]	A	C	1.731e^-4	0.789	INTRON dar1	TF binding site BDTNP1_TFBS_dl
2R	14386100	2R_14386100_SNP [dm3] 2R_18498595_SNP [dm6]	T	A	1.734e^-4	0.789	UPSTREAM CG30116 INTERGENIC
3L	4270090	3L_4270090_SNP [dm3] 3L_4270090_SNP [dm6]	A	T	1.736e^-4	0.789	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8693045	2L_8693045_SNP [dm3] 2L_8693045_SNP [dm6]	A	C	1.745e^-4	0.789	UPSTREAM Hnf4 INTRON Hnf4	TF binding site mE1_TFBS_cnc
3R	16954920	3R_16954920_SNP [dm3] 3R_21129198_SNP [dm6]	A	G	1.747e^-4	0.789	SPLICE_SITE_REGION Obp93a UTR_3_PRIME CG5793 DOWNSTREAM CG5793 INTRON Obp93a
3R	16954921	3R_16954921_SNP [dm3] 3R_21129199_SNP [dm6]	C	A	1.747e^-4	0.789	SPLICE_SITE_REGION Obp93a UTR_3_PRIME CG5793 DOWNSTREAM CG5793 INTRON Obp93a
2L	9342167	2L_9342167_SNP [dm3] 2L_9342167_SNP [dm6]	A	T	1.749e^-4	0.789	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2R	15279129	2R_15279129_SNP [dm3] 2R_19391624_SNP [dm6]	C	G	1.751e^-4	0.789	SYNONYMOUS_CODING CG11257 DOWNSTREAM SdhA
3L	8380853	3L_8380853_SNP [dm3] 3L_8387753_SNP [dm6]	A	G	1.767e^-4	0.789	NON_SYNONYMOUS_CODING ImpE1
2R	8937379	2R_8937379_SNP [dm3] 2R_13049874_SNP [dm6]	A	T	1.781e^-4	0.789	UPSTREAM CG13324 INTERGENIC
X	6829581	X_6829581_SNP [dm3] X_6935548_SNP [dm6]	G	T	1.782e^-4	0.789	INTRON CG14431
3R	11688226	3R_11688226_SNP [dm3] 3R_15862504_SNP [dm6]	C	T	1.792e^-4	0.789	SYNONYMOUS_CODING CG31183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19205132	3L_19205132_SNP [dm3] 3L_19212032_SNP [dm6]	C	T	1.794e^-4	0.789	INTRON fz2
2R	6087709	2R_6087709_SNP [dm3] 2R_10200204_SNP [dm6]	G	C	1.799e^-4	0.789	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6087713	2R_6087713_SNP [dm3] 2R_10200208_SNP [dm6]	C	T	1.799e^-4	0.789	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13074121	3R_13074121_SNP [dm3] 3R_17248399_SNP [dm6]	T	G	1.800e^-4	0.789	UPSTREAM beat-IIb INTRON beat-IIb
3R	1821526	3R_1821526_SNP [dm3] 3R_5995804_SNP [dm6]	T	C	1.801e^-4	0.789	EXON CR44928
2L	12860002	2L_12860002_SNP [dm3] 2L_12860002_SNP [dm6]	G	T	1.803e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8737812	3R_8737812_SNP [dm3] 3R_12912090_SNP [dm6]	C	A	1.825e^-4	0.789	UPSTREAM CG10909 INTERGENIC
3R	2914936	3R_2914936_SNP [dm3] 3R_7089214_SNP [dm6]	C	T	1.827e^-4	0.789	DOWNSTREAM alphaTub84B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_zfh1
3R	2917317	3R_2917317_SNP [dm3] 3R_7091595_SNP [dm6]	G	A	1.827e^-4	0.789	DOWNSTREAM CR43685 INTERGENIC	TF binding site mE1_TFBS_cad
3R	2926474	3R_2926474_SNP [dm3] 3R_7100752_SNP [dm6]	T	A	1.827e^-4	0.789	INTRON Alh	TF binding site mE1_TFBS_cad
3L	1554042	3L_1554042_SNP [dm3] 3L_1554042_SNP [dm6]	C	G	1.827e^-4	0.789	DOWNSTREAM Cct1 INTRON Cct2	TF binding site mE1_TFBS_cad
X	10790996	X_10790996_SNP [dm3] X_10896963_SNP [dm6]	A	T	1.836e^-4	0.789	SYNONYMOUS_CODING CG1582	TF binding site mE1_TFBS_sens
3R	9816251	3R_9816251_SNP [dm3] 3R_13990529_SNP [dm6]	T	A	1.837e^-4	0.789	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18075077	2L_18075077_SNP [dm3] 2L_18075077_SNP [dm6]	C	A	1.838e^-4	0.789	INTERGENIC
2L	3434623	2L_3434623_SNP [dm3] 2L_3434623_SNP [dm6]	C	A	1.839e^-4	0.789	INTERGENIC
2R	6228323	2R_6228323_SNP [dm3] 2R_10340818_SNP [dm6]	T	A	1.839e^-4	0.789	INTRON CG42732
X	5604365	X_5604365_SNP [dm3] X_5710332_SNP [dm6]	C	T	1.840e^-4	0.789	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16993140	3R_16993140_SNP [dm3] 3R_21167418_SNP [dm6]	T	A	1.843e^-4	0.789	INTRON SNF4Agamma & 1 other
3R	24112706	3R_24112706_SNP [dm3] 3R_28286984_SNP [dm6]	T	C	1.845e^-4	0.789	INTERGENIC
X	20520982	X_20520982_SNP [dm3] X_20649955_SNP [dm6]	T	C	1.847e^-4	0.789	INTERGENIC
3R	24106185	3R_24106185_SNP [dm3] 3R_28280463_SNP [dm6]	G	A	1.849e^-4	0.789	INTERGENIC
2L	4136666	2L_4136666_SNP [dm3] 2L_4136666_SNP [dm6]	T	A	1.853e^-4	0.789	INTERGENIC
3R	13364021	3R_13364021_SNP [dm3] 3R_17538299_SNP [dm6]	A	G	1.857e^-4	0.789	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3L	17999051	3L_17999051_DEL [dm3] 3L_18005951_DEL [dm6]	GG	G	1.858e^-4	0.789	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11432809	3L_11432809_SNP [dm3] 3L_11439709_SNP [dm6]	T	A	1.863e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16989921	2R_16989921_SNP [dm3] 2R_21102416_SNP [dm6]	C	T	1.868e^-4	0.789	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13881630	2L_13881630_SNP [dm3] 2L_13881630_SNP [dm6]	A	G	1.878e^-4	0.789	INTRON CenG1A
3R	23529425	3R_23529425_SNP [dm3] 3R_27703703_SNP [dm6]	T	C	1.883e^-4	0.789	UTR_3_PRIME CG12428 DOWNSTREAM btz
2L	9302548	2L_9302548_SNP [dm3] 2L_9302548_SNP [dm6]	G	A	1.887e^-4	0.789	DOWNSTREAM Ggamma30A INTERGENIC
2R	11980109	2R_11980109_SNP [dm3] 2R_16092604_SNP [dm6]	T	C	1.890e^-4	0.789	INTRON Dg
3L	12299813	3L_12299813_SNP [dm3] 3L_12306713_SNP [dm6]	C	A	1.891e^-4	0.789	INTERGENIC
3R	24110838	3R_24110838_SNP [dm3] 3R_28285116_SNP [dm6]	C	A	1.909e^-4	0.789	DOWNSTREAM CG34437 INTERGENIC
3L	452085	3L_452085_SNP [dm3] 3L_452085_SNP [dm6]	A	T	1.916e^-4	0.789	INTRON klar
3R	23528826	3R_23528826_INS [dm3] 3R_27703104_INS [dm6]	T	CGA	1.920e^-4	0.789	UTR_3_PRIME btz DOWNSTREAM CG12428	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6087612	2R_6087612_SNP [dm3] 2R_10200107_SNP [dm6]	G	A	1.921e^-4	0.789	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13823767	3L_13823767_INS [dm3] 3L_13830667_INS [dm6]	A	AA	1.925e^-4	0.789	INTERGENIC
2R	16765894	2R_16765894_SNP [dm3] 2R_20878389_SNP [dm6]	A	C	1.927e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
X	21326645	X_21326645_SNP [dm3] X_21455618_SNP [dm6]	G	A	1.932e^-4	0.789	INTRON CG42343
2R	3258008	2R_3258008_SNP [dm3] 2R_7370503_SNP [dm6]	A	G	1.932e^-4	0.789	INTRON Dscam1	regulatory region REDfly_CRMs
2L	18075109	2L_18075109_DEL [dm3] 2L_18075109_DEL [dm6]	AGGC	A	1.939e^-4	0.789	INTERGENIC
2L	18075124	2L_18075124_SNP [dm3] 2L_18075124_SNP [dm6]	A	T	1.939e^-4	0.789	INTERGENIC
3L	2802260	3L_2802260_SNP [dm3] 3L_2802260_SNP [dm6]	T	C	1.943e^-4	0.789	INTRON CG43444
2L	13413747	2L_13413747_SNP [dm3] 2L_13413747_SNP [dm6]	A	G	1.954e^-4	0.789	DOWNSTREAM CG16956 & 1 other INTERGENIC
2L	6564674	2L_6564674_SNP [dm3] 2L_6564674_SNP [dm6]	C	T	1.959e^-4	0.789	UTR_3_PRIME Ent2 & 1 other DOWNSTREAM Ent2
2L	18075076	2L_18075076_SNP [dm3] 2L_18075076_SNP [dm6]	C	T	1.960e^-4	0.789	INTERGENIC
3R	13471161	3R_13471161_SNP [dm3] 3R_17645439_SNP [dm6]	A	T	1.970e^-4	0.789	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9225569	3R_9225569_SNP [dm3] 3R_13399847_SNP [dm6]	T	C	1.977e^-4	0.789	INTRON CG9796
2R	9126353	2R_9126353_SNP [dm3] 2R_13238848_SNP [dm6]	G	A	1.982e^-4	0.789	NON_SYNONYMOUS_CODING CG4679 UPSTREAM GstE14	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	23201183	3R_23201183_SNP [dm3] 3R_27375461_SNP [dm6]	G	A	1.990e^-4	0.789	UTR_3_PRIME side DOWNSTREAM side
X	3738901	X_3738901_SNP [dm3] X_3844868_SNP [dm6]	G	A	1.996e^-4	0.789	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17335366	X_17335366_SNP [dm3] X_17441333_SNP [dm6]	C	A	2.001e^-4	0.789	INTRON CG12994
3R	13399467	3R_13399467_SNP [dm3] 3R_17573745_SNP [dm6]	C	T	2.007e^-4	0.789	INTERGENIC
3R	13397562	3R_13397562_SNP [dm3] 3R_17571840_SNP [dm6]	A	T	2.011e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	11349631	3L_11349631_SNP [dm3] 3L_11356531_SNP [dm6]	C	A	2.012e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1374494	2L_1374494_SNP [dm3] 2L_1374494_SNP [dm6]	T	C	2.016e^-4	0.789	INTERGENIC
3R	13649911	3R_13649911_SNP [dm3] 3R_17824189_SNP [dm6]	C	T	2.016e^-4	0.789	INTRON tinc
3R	13959046	3R_13959046_SNP [dm3] 3R_18133324_SNP [dm6]	G	A	2.017e^-4	0.789	UTR_3_PRIME sr
2L	559375	2L_559375_SNP [dm3] 2L_559375_SNP [dm6]	A	T	2.021e^-4	0.789	UPSTREAM CG2789 & 1 other INTRON rempA	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
2L	18493366	2L_18493366_SNP [dm3] 2L_18493366_SNP [dm6]	G	A	2.043e^-4	0.789	INTRON kon	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14164763	2R_14164763_SNP [dm3] 2R_18277258_SNP [dm6]	G	A	2.044e^-4	0.789	UPSTREAM pen-2 & 1 other DOWNSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	5116261	2L_5116261_SNP [dm3] 2L_5116261_SNP [dm6]	T	A	2.051e^-4	0.789	INTRON Msp300
3R	13373983	3R_13373983_SNP [dm3] 3R_17548261_SNP [dm6]	T	C	2.051e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27274854	3R_27274854_SNP [dm3] 3R_31449132_SNP [dm6]	A	G	2.068e^-4	0.789	INTRON Gprk2
3R	9566291	3R_9566291_SNP [dm3] 3R_13740569_SNP [dm6]	T	C	2.068e^-4	0.789	INTRON CG34383
3L	6629349	3L_6629349_SNP [dm3] 3L_6636249_SNP [dm6]	A	G	2.069e^-4	0.789	INTERGENIC
2L	6529378	2L_6529378_SNP [dm3] 2L_6529378_SNP [dm6]	C	A	2.076e^-4	0.789	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20451106	X_20451106_SNP [dm3] X_20580079_SNP [dm6]	C	T	2.080e^-4	0.789	INTERGENIC
3R	13915670	3R_13915670_SNP [dm3] 3R_18089948_SNP [dm6]	A	T	2.081e^-4	0.789	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3761490	3L_3761490_SNP [dm3] 3L_3761490_SNP [dm6]	T	C	2.087e^-4	0.789	INTRON CG32264
3R	13778634	3R_13778634_SNP [dm3] 3R_17952912_SNP [dm6]	G	A	2.089e^-4	0.789	INTRON cpo	TF binding site mE1_TFBS_cad
2R	14837253	2R_14837253_SNP [dm3] 2R_18949748_SNP [dm6]	G	A	2.090e^-4	0.789	INTRON sano	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13871386	3L_13871386_SNP [dm3] 3L_13878286_SNP [dm6]	A	C	2.092e^-4	0.789	UPSTREAM CG13737 INTRON dysc
2L	12858565	2L_12858565_SNP [dm3] 2L_12858565_SNP [dm6]	A	T	2.101e^-4	0.789	INTERGENIC
3R	23538629	3R_23538629_DEL [dm3] 3R_27712907_DEL [dm6]	CTCCC	C	2.112e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13878692	2L_13878692_SNP [dm3] 2L_13878692_SNP [dm6]	A	T	2.112e^-4	0.789	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9027531	3L_9027531_SNP [dm3] 3L_9034431_SNP [dm6]	C	T	2.129e^-4	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5521755	X_5521755_SNP [dm3] X_5627722_SNP [dm6]	G	T	2.129e^-4	0.789	UTR_3_PRIME CG42492 DOWNSTREAM CG42492
X	12133922	X_12133922_SNP [dm3] X_12239889_SNP [dm6]	G	T	2.133e^-4	0.789	INTRON Ten-a
3L	13220225	3L_13220225_SNP [dm3] 3L_13227125_SNP [dm6]	T	A	2.135e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	6272264	2L_6272264_SNP [dm3] 2L_6272264_SNP [dm6]	A	G	2.136e^-4	0.789	DOWNSTREAM CR42735 INTRON Ddr
X	21958105	X_21958105_SNP [dm3] X_22556269_SNP [dm6]	T	G	2.138e^-4	0.789	INTERGENIC
3L	4211904	3L_4211904_SNP [dm3] 3L_4211904_SNP [dm6]	C	T	2.139e^-4	0.789	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
X	9228816	X_9228816_SNP [dm3] X_9334783_SNP [dm6]	C	T	2.142e^-4	0.789	INTRON CG34449
2L	15367150	2L_15367150_SNP [dm3] 2L_15367150_SNP [dm6]	T	C	2.145e^-4	0.789	INTERGENIC
2R	8773319	2R_8773319_SNP [dm3] 2R_12885814_SNP [dm6]	C	A	2.151e^-4	0.789	INTRON vg	TF binding site BDTNP1_TFBS_dl
2L	18088449	2L_18088449_SNP [dm3] 2L_18088449_SNP [dm6]	G	C	2.151e^-4	0.789	INTERGENIC
2L	18507744	2L_18507744_SNP [dm3] 2L_18507744_SNP [dm6]	A	G	2.152e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22684925	3R_22684925_SNP [dm3] 3R_26859203_SNP [dm6]	G	T	2.154e^-4	0.789	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	2.157e^-4	0.789	INTRON CG9932
3L	9027533	3L_9027533_SNP [dm3] 3L_9034433_SNP [dm6]	G	T	2.161e^-4	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7083161	2L_7083161_SNP [dm3] 2L_7083161_SNP [dm6]	C	G	2.166e^-4	0.789	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	13474320	3R_13474320_SNP [dm3] 3R_17648598_SNP [dm6]	C	T	2.172e^-4	0.789	INTRON CG14322
3R	8103970	3R_8103970_INS [dm3] 3R_12278248_INS [dm6]	A	ACTGCAA	2.184e^-4	0.789	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	6275022	3L_6275022_SNP [dm3] 3L_6281922_SNP [dm6]	A	G	2.185e^-4	0.789	INTERGENIC
2R	19317658	2R_19317658_SNP [dm3] 2R_23430135_SNP [dm6]	C	T	2.186e^-4	0.789	INTRON CG9815
2R	13294087	2R_13294087_SNP [dm3] 2R_17406582_SNP [dm6]	C	T	2.190e^-4	0.789	NON_SYNONYMOUS_CODING CG6568	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14486219	3L_14486219_SNP [dm3] 3L_14493119_SNP [dm6]	A	T	2.199e^-4	0.789	INTRON bbg
3L	15705673	3L_15705673_SNP [dm3] 3L_15712573_SNP [dm6]	T	A	2.201e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	9126783	2R_9126783_SNP [dm3] 2R_13239278_SNP [dm6]	A	G	2.216e^-4	0.789	NON_SYNONYMOUS_CODING CG4679 UPSTREAM GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16765909	2R_16765909_SNP [dm3] 2R_20878404_SNP [dm6]	T	C	2.218e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
3R	23367480	3R_23367480_SNP [dm3] 3R_27541758_SNP [dm6]	G	A	2.223e^-4	0.789	UPSTREAM Gr98b INTERGENIC
2R	3221641	2R_3221641_SNP [dm3] 2R_7334136_SNP [dm6]	T	C	2.223e^-4	0.789	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
2R	11755629	2R_11755629_SNP [dm3] 2R_15868124_SNP [dm6]	A	C	2.225e^-4	0.789	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	3271888	2R_3271888_SNP [dm3] 2R_7384383_SNP [dm6]	G	A	2.242e^-4	0.789	NON_SYNONYMOUS_CODING cos	TF binding site mE1_TFBS_chinmo
3R	19127364	3R_19127364_SNP [dm3] 3R_23301642_SNP [dm6]	C	T	2.249e^-4	0.789	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	15836039	3L_15836039_SNP [dm3] 3L_15842939_SNP [dm6]	A	G	2.257e^-4	0.789	DOWNSTREAM mir-263b INTRON CG32150
X	6966609	X_6966609_INS [dm3] X_7072576_INS [dm6]	A	ATACA	2.262e^-4	0.789	UTR_3_PRIME CG4607
3L	4791041	3L_4791041_SNP [dm3] 3L_4791041_SNP [dm6]	G	A	2.264e^-4	0.789	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19601921	3L_19601921_SNP [dm3] 3L_19608821_SNP [dm6]	G	T	2.265e^-4	0.789	NON_SYNONYMOUS_CODING Lon DOWNSTREAM CG9372	TF binding site mE1_TFBS_cad
2L	9342067	2L_9342067_SNP [dm3] 2L_9342067_SNP [dm6]	T	C	2.267e^-4	0.789	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3L	22631538	3L_22631538_SNP [dm3] 3L_22638438_SNP [dm6]	G	A	2.268e^-4	0.789	UPSTREAM CG14459 INTERGENIC
3L	1591567	3L_1591567_SNP [dm3] 3L_1591567_SNP [dm6]	T	A	2.270e^-4	0.789	INTRON CG13917
X	12331050	X_12331050_SNP [dm3] X_12437017_SNP [dm6]	T	A	2.271e^-4	0.789	INTRON Pkcdelta
3R	8079864	3R_8079864_SNP [dm3] 3R_12254142_SNP [dm6]	G	C	2.273e^-4	0.789	UPSTREAM CG3942 INTERGENIC	TF binding site mE1_TFBS_sbb
X	2691821	X_2691821_SNP [dm3] X_2797788_SNP [dm6]	T	C	2.278e^-4	0.789	INTRON kirre	regulatory region REDfly_CRMs
3L	14665614	3L_14665614_SNP [dm3] 3L_14672514_SNP [dm6]	C	A	2.279e^-4	0.789	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
3R	3902698	3R_3902698_SNP [dm3] 3R_8076976_SNP [dm6]	T	A	2.289e^-4	0.789	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10919038	3R_10919038_SNP [dm3] 3R_15093316_SNP [dm6]	A	T	2.297e^-4	0.789	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	2.300e^-4	0.789	UTR_3_PRIME CG11714 UPSTREAM Fuca
3L	15836380	3L_15836380_SNP [dm3] 3L_15843280_SNP [dm6]	T	C	2.303e^-4	0.789	DOWNSTREAM mir-263b INTRON CG32150	TF binding site mE1_TFBS_HSA
2R	16765907	2R_16765907_INS [dm3] 2R_20878402_INS [dm6]	A	AC	2.306e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
3R	9081589	3R_9081589_SNP [dm3] 3R_13255867_SNP [dm6]	C	T	2.325e^-4	0.789	INTRON Ace
3L	4886576	3L_4886576_SNP [dm3] 3L_4886576_SNP [dm6]	T	A	2.327e^-4	0.789	INTRON CG17150
2R	17089115	2R_17089115_SNP [dm3] 2R_21201610_SNP [dm6]	G	A	2.330e^-4	0.789	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17089116	2R_17089116_SNP [dm3] 2R_21201611_SNP [dm6]	T	A	2.330e^-4	0.789	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16556828	3L_16556828_SNP [dm3] 3L_16563728_SNP [dm6]	C	T	2.332e^-4	0.789	UTR_3_PRIME Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1
X	2831670	X_2831670_SNP [dm3] X_2937637_SNP [dm6]	T	C	2.332e^-4	0.789	SYNONYMOUS_CODING CG3598 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9441743	X_9441743_DEL [dm3] X_9547710_DEL [dm6]	TG	T	2.339e^-4	0.789	INTRON CG32700
2R	20080943	2R_20080943_SNP [dm3] 2R_24193420_SNP [dm6]	T	C	2.342e^-4	0.789	SYNONYMOUS_CODING ocm
3L	2681912	3L_2681912_INS [dm3] 3L_2681912_INS [dm6]	G	GTAGCCAGTCCCGAC...	2.346e^-4	0.789	INTRON Fife
2R	19302244	2R_19302244_SNP [dm3] 2R_23414721_SNP [dm6]	A	C	2.356e^-4	0.789	NON_SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13875961	2L_13875961_SNP [dm3] 2L_13875961_SNP [dm6]	T	C	2.358e^-4	0.789	INTRON CenG1A
3R	23220590	3R_23220590_SNP [dm3] 3R_27394868_SNP [dm6]	C	T	2.359e^-4	0.789	INTRON side
2L	2685132	2L_2685132_SNP [dm3] 2L_2685132_SNP [dm6]	G	A	2.363e^-4	0.789	INTRON CG31690
3R	19135574	3R_19135574_SNP [dm3] 3R_23309852_SNP [dm6]	T	G	2.367e^-4	0.789	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3490709	2L_3490709_SNP [dm3] 2L_3490709_SNP [dm6]	C	T	2.369e^-4	0.789	INTRON CG15414
3L	8366872	3L_8366872_SNP [dm3] 3L_8373772_SNP [dm6]	G	A	2.384e^-4	0.789	INTRON ImpE1
2R	8938495	2R_8938495_SNP [dm3] 2R_13050990_SNP [dm6]	T	A	2.387e^-4	0.789	INTERGENIC
3L	2513024	3L_2513024_SNP [dm3] 3L_2513024_SNP [dm6]	G	A	2.387e^-4	0.789	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23669794	3R_23669794_SNP [dm3] 3R_27844072_SNP [dm6]	A	G	2.390e^-4	0.789	INTRON CG34353
X	14405501	X_14405501_SNP [dm3] X_14511468_SNP [dm6]	A	G	2.392e^-4	0.789	INTERGENIC
3R	8743893	3R_8743893_SNP [dm3] 3R_12918171_SNP [dm6]	T	C	2.394e^-4	0.789	INTRON beat-Vb
3L	15705792	3L_15705792_SNP [dm3] 3L_15712692_SNP [dm6]	G	A	2.395e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	3257148	2R_3257148_SNP [dm3] 2R_7369643_SNP [dm6]	A	G	2.399e^-4	0.789	INTRON Dscam1	TF binding site mE1_TFBS_inv
2R	17760284	2R_17760284_SNP [dm3] 2R_21872779_SNP [dm6]	G	A	2.414e^-4	0.789	INTRON Fili	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24476667	3R_24476667_SNP [dm3] 3R_28650945_SNP [dm6]	T	G	2.431e^-4	0.789	UPSTREAM CG31050 INTERGENIC
3L	7948368	3L_7948368_SNP [dm3] 3L_7955268_SNP [dm6]	C	T	2.432e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26038088	3R_26038088_SNP [dm3] 3R_30212366_SNP [dm6]	A	G	2.437e^-4	0.789	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 1 other INTRON CecA2
2L	14110613	2L_14110613_SNP [dm3] 2L_14110613_SNP [dm6]	G	T	2.442e^-4	0.789	INTRON CG31769
2L	9339624	2L_9339624_SNP [dm3] 2L_9339624_SNP [dm6]	T	C	2.442e^-4	0.789	SYNONYMOUS_CODING Eaat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21623752	3R_21623752_DEL [dm3] 3R_25798030_DEL [dm6]	ACCAA	A	2.449e^-4	0.789	UPSTREAM CR43847 INTERGENIC
3L	1535005	3L_1535005_SNP [dm3] 3L_1535005_SNP [dm6]	A	G	2.453e^-4	0.789	UTR_3_PRIME CG12091 UPSTREAM CG12090 DOWNSTREAM CG12091	TF binding site mE1_TFBS_cad
3L	14998431	3L_14998431_SNP [dm3] 3L_15005331_SNP [dm6]	T	A	2.455e^-4	0.789	INTRON Reck
2L	18092359	2L_18092359_SNP [dm3] 2L_18092359_SNP [dm6]	A	T	2.457e^-4	0.789	UPSTREAM CG15153 INTERGENIC
2L	18075130	2L_18075130_DEL [dm3] 2L_18075130_DEL [dm6]	TGTCCATCGAATATCC...	A	2.459e^-4	0.789	INTERGENIC
3L	4890310	3L_4890310_SNP [dm3] 3L_4890310_SNP [dm6]	G	T	2.477e^-4	0.789	INTRON CG17150
2R	11980447	2R_11980447_SNP [dm3] 2R_16092942_SNP [dm6]	G	T	2.482e^-4	0.789	INTRON Dg	TF binding site BDTNP1_TFBS_dl
3R	18657998	3R_18657998_SNP [dm3] 3R_22832276_SNP [dm6]	C	G	2.482e^-4	0.789	INTERGENIC
3R	20900503	3R_20900503_SNP [dm3] 3R_25074781_SNP [dm6]	A	C	2.489e^-4	0.789	UPSTREAM CG11920 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13951094	2L_13951094_SNP [dm3] 2L_13951094_SNP [dm6]	A	G	2.493e^-4	0.789	INTRON Ance-3
3L	12626933	3L_12626933_SNP [dm3] 3L_12633833_SNP [dm6]	T	C	2.498e^-4	0.789	INTRON CR32111 EXON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2099493	3L_2099493_SNP [dm3] 3L_2099493_SNP [dm6]	A	G	2.504e^-4	0.789	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4136641	2L_4136641_SNP [dm3] 2L_4136641_SNP [dm6]	G	A	2.505e^-4	0.789	INTERGENIC
3L	14998334	3L_14998334_SNP [dm3] 3L_15005234_SNP [dm6]	G	C	2.510e^-4	0.789	INTRON Reck
3R	11711964	3R_11711964_SNP [dm3] 3R_15886242_SNP [dm6]	G	T	2.519e^-4	0.789	INTERGENIC
2R	13958507	2R_13958507_SNP [dm3] 2R_18071002_SNP [dm6]	T	A	2.519e^-4	0.789	INTRON CG34386
2R	19716299	2R_19716299_SNP [dm3] 2R_23828776_SNP [dm6]	C	T	2.521e^-4	0.789	INTRON CG5549
X	16899182	X_16899182_SNP [dm3] X_17005149_SNP [dm6]	C	A	2.530e^-4	0.789	INTRON CG45002
3R	18658014	3R_18658014_SNP [dm3] 3R_22832292_SNP [dm6]	A	G	2.533e^-4	0.789	INTERGENIC
3R	13399466	3R_13399466_SNP [dm3] 3R_17573744_SNP [dm6]	A	G	2.535e^-4	0.789	INTERGENIC
2L	871754	2L_871754_SNP [dm3] 2L_871754_SNP [dm6]	G	T	2.536e^-4	0.789	INTRON PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5284650	3L_5284650_SNP [dm3] 3L_5291550_SNP [dm6]	T	C	2.538e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8736646	3R_8736646_SNP [dm3] 3R_12910924_SNP [dm6]	C	G	2.538e^-4	0.789	NON_SYNONYMOUS_CODING CG10909
2L	15158216	2L_15158216_SNP [dm3] 2L_15158216_SNP [dm6]	T	C	2.549e^-4	0.789	INTERGENIC
3L	11643362	3L_11643362_SNP [dm3] 3L_11650262_SNP [dm6]	G	A	2.560e^-4	0.789	UTR_3_PRIME CG7339 DOWNSTREAM CG32085 & 1 other
2L	9342157	2L_9342157_SNP [dm3] 2L_9342157_SNP [dm6]	G	A	2.563e^-4	0.789	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2R	3228744	2R_3228744_DEL [dm3] 2R_7341239_DEL [dm6]	GG	G	2.566e^-4	0.789	SPLICE_SITE_REGION Dscam1 INTRON Dscam1
3L	14705041	3L_14705041_SNP [dm3] 3L_14711941_SNP [dm6]	G	A	2.569e^-4	0.789	INTRON ome
2L	2275483	2L_2275483_SNP [dm3] 2L_2275483_SNP [dm6]	A	C	2.570e^-4	0.789	DOWNSTREAM CR43753 INTRON CR43753
3L	15656867	3L_15656867_SNP [dm3] 3L_15663767_SNP [dm6]	G	C	2.574e^-4	0.789	INTERGENIC
2R	16399109	2R_16399109_SNP [dm3] 2R_20511604_SNP [dm6]	T	C	2.592e^-4	0.789	UPSTREAM CR44649 DOWNSTREAM CR44648 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13683027	3L_13683027_SNP [dm3] 3L_13689927_SNP [dm6]	C	T	2.603e^-4	0.789	INTRON bru-3
3R	6696364	3R_6696364_SNP [dm3] 3R_10870642_SNP [dm6]	G	C	2.603e^-4	0.789	DOWNSTREAM Fdh & 1 other INTERGENIC
3L	4130031	3L_4130031_SNP [dm3] 3L_4130031_SNP [dm6]	T	C	2.612e^-4	0.789	INTRON ens
2R	15824847	2R_15824847_DEL [dm3] 2R_19937342_DEL [dm6]	AA	A	2.613e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16139728	3L_16139728_DEL [dm3] 3L_16146628_DEL [dm6]	GCTTTCTATTTG...	G	2.619e^-4	0.789	INTRON CG5151
2L	13326891	2L_13326891_SNP [dm3] 2L_13326891_SNP [dm6]	A	T	2.619e^-4	0.789	INTRON CG43778
2L	14203234	2L_14203234_SNP [dm3] 2L_14203234_SNP [dm6]	C	T	2.620e^-4	0.789	INTRON Dyrk2
2R	9777224	2R_9777224_SNP [dm3] 2R_13889719_SNP [dm6]	C	T	2.622e^-4	0.789	NON_SYNONYMOUS_CODING shot INTRON shot
3R	27292733	3R_27292733_SNP [dm3] 3R_31467011_SNP [dm6]	G	A	2.622e^-4	0.789	INTERGENIC
3L	6266184	3L_6266184_SNP [dm3] 3L_6273084_SNP [dm6]	A	G	2.625e^-4	0.789	INTERGENIC
2L	13146400	2L_13146400_SNP [dm3] 2L_13146400_SNP [dm6]	A	G	2.627e^-4	0.789	UPSTREAM CR44199 INTERGENIC
X	6285828	X_6285828_SNP [dm3] X_6391795_SNP [dm6]	A	T	2.631e^-4	0.789	INTERGENIC
3R	10251227	3R_10251227_SNP [dm3] 3R_14425505_SNP [dm6]	A	G	2.637e^-4	0.789	INTRON cv-c
3L	10713020	3L_10713020_SNP [dm3] 3L_10719920_SNP [dm6]	A	T	2.653e^-4	0.789	INTERGENIC
3L	10939333	3L_10939333_SNP [dm3] 3L_10946233_SNP [dm6]	G	T	2.657e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
X	16899108	X_16899108_SNP [dm3] X_17005075_SNP [dm6]	T	C	2.669e^-4	0.789	INTRON CG45002
3L	14709767	3L_14709767_SNP [dm3] 3L_14716667_SNP [dm6]	A	G	2.670e^-4	0.789	INTRON ome	regulatory region REDfly_CRMs
2R	19289714	2R_19289714_SNP [dm3] 2R_23402191_SNP [dm6]	G	C	2.671e^-4	0.789	UTR_5_PRIME CG3520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2101526	3L_2101526_SNP [dm3] 3L_2101526_SNP [dm6]	C	A	2.671e^-4	0.789	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11861813	3L_11861813_SNP [dm3] 3L_11868713_SNP [dm6]	T	C	2.671e^-4	0.789	INTRON CG44837
2R	16239571	2R_16239571_SNP [dm3] 2R_20352066_SNP [dm6]	A	C	2.691e^-4	0.789	INTERGENIC
3L	15656863	3L_15656863_INS [dm3] 3L_15663763_INS [dm6]	T	TTTTCTTCT	2.700e^-4	0.789	INTERGENIC
2L	8146628	2L_8146628_SNP [dm3] 2L_8146628_SNP [dm6]	T	C	2.707e^-4	0.789	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13965666	2L_13965666_SNP [dm3] 2L_13965666_SNP [dm6]	G	A	2.710e^-4	0.789	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20623877	3R_20623877_SNP [dm3] 3R_24798155_SNP [dm6]	G	A	2.710e^-4	0.789	SYNONYMOUS_CODING Ude DOWNSTREAM Ets96B
3L	10713166	3L_10713166_DEL [dm3] 3L_10720066_DEL [dm6]	TAGCATTAAGC...	T	2.711e^-4	0.789	INTERGENIC
3L	11349660	3L_11349660_SNP [dm3] 3L_11356560_SNP [dm6]	C	T	2.712e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5044776	3L_5044776_SNP [dm3] 3L_5044776_SNP [dm6]	C	T	2.715e^-4	0.789	INTRON Con
3L	7213732	3L_7213732_SNP [dm3] 3L_7220632_SNP [dm6]	T	A	2.715e^-4	0.789	INTERGENIC
2L	5472346	2L_5472346_SNP [dm3] 2L_5472346_SNP [dm6]	T	C	2.718e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24098434	3R_24098434_SNP [dm3] 3R_28272712_SNP [dm6]	T	C	2.727e^-4	0.789	INTERGENIC
3L	13768675	3L_13768675_SNP [dm3] 3L_13775575_SNP [dm6]	G	A	2.729e^-4	0.789	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14991764	3L_14991764_SNP [dm3] 3L_14998664_SNP [dm6]	T	C	2.734e^-4	0.789	DOWNSTREAM Zip71B INTRON mRpL39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
3R	25377323	3R_25377323_SNP [dm3] 3R_29551601_SNP [dm6]	G	A	2.745e^-4	0.789	INTERGENIC
X	16231382	X_16231382_SNP [dm3] X_16337349_SNP [dm6]	G	A	2.747e^-4	0.789	INTRON Dsp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19716907	2R_19716907_SNP [dm3] 2R_23829384_SNP [dm6]	A	T	2.748e^-4	0.789	INTRON CG5549
3L	477392	3L_477392_SNP [dm3] 3L_477392_SNP [dm6]	T	C	2.749e^-4	0.789	INTRON klar
X	10790562	X_10790562_SNP [dm3] X_10896529_SNP [dm6]	G	A	2.756e^-4	0.789	SYNONYMOUS_CODING CG1582	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22348691	3L_22348691_SNP [dm3] 3L_22355591_SNP [dm6]	G	C	2.756e^-4	0.789	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3490714	2L_3490714_SNP [dm3] 2L_3490714_SNP [dm6]	G	C	2.756e^-4	0.789	INTRON CG15414
3L	5286580	3L_5286580_SNP [dm3] 3L_5293480_SNP [dm6]	G	A	2.757e^-4	0.789	INTERGENIC
2L	16586396	2L_16586396_DEL [dm3] 2L_16586396_DEL [dm6]	GTGAAAATGTCAGTGGTGAA...	G	2.759e^-4	0.789	INTRON CG42389
3L	6455467	3L_6455467_SNP [dm3] 3L_6462367_SNP [dm6]	C	T	2.765e^-4	0.789	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2864582	3R_2864582_SNP [dm3] 3R_7038860_SNP [dm6]	G	A	2.767e^-4	0.789	EXON CR44933
2L	1068606	2L_1068606_SNP [dm3] 2L_1068606_SNP [dm6]	C	T	2.780e^-4	0.789	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068607	2L_1068607_SNP [dm3] 2L_1068607_SNP [dm6]	C	T	2.780e^-4	0.789	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068609	2L_1068609_SNP [dm3] 2L_1068609_SNP [dm6]	A	G	2.780e^-4	0.789	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14975969	3L_14975969_SNP [dm3] 3L_14982869_SNP [dm6]	A	G	2.784e^-4	0.789	UTR_5_PRIME CG5114 DOWNSTREAM CG3349	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	14112018	2L_14112018_SNP [dm3] 2L_14112018_SNP [dm6]	A	G	2.788e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11478152	2L_11478152_SNP [dm3] 2L_11478152_SNP [dm6]	C	T	2.796e^-4	0.789	INTERGENIC
2R	6220781	2R_6220781_SNP [dm3] 2R_10333276_SNP [dm6]	A	G	2.799e^-4	0.789	INTRON CG42732
3L	1454382	3L_1454382_INS [dm3] 3L_1454382_INS [dm6]	T	TT	2.801e^-4	0.789	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
2L	10820336	2L_10820336_SNP [dm3] 2L_10820336_SNP [dm6]	C	T	2.815e^-4	0.789	NON_SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos
3L	4130028	3L_4130028_SNP [dm3] 3L_4130028_SNP [dm6]	C	T	2.819e^-4	0.789	INTRON ens
3R	11515851	3R_11515851_SNP [dm3] 3R_15690129_SNP [dm6]	G	C	2.819e^-4	0.789	UTR_3_PRIME pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13073210	3R_13073210_SNP [dm3] 3R_17247488_SNP [dm6]	T	C	2.821e^-4	0.789	SYNONYMOUS_CODING beat-IIb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2413723	3L_2413723_SNP [dm3] 3L_2413723_SNP [dm6]	A	G	2.821e^-4	0.789	UPSTREAM CG45186 INTRON CG45186
3R	10251218	3R_10251218_SNP [dm3] 3R_14425496_SNP [dm6]	T	A	2.822e^-4	0.789	INTRON cv-c
X	12805364	X_12805364_SNP [dm3] X_12911331_SNP [dm6]	G	A	2.830e^-4	0.789	INTRON CG4645
3L	15312461	3L_15312461_INS [dm3] 3L_15319361_INS [dm6]	G	GG	2.840e^-4	0.789	INTERGENIC
2L	908023	2L_908023_SNP [dm3] 2L_908023_SNP [dm6]	C	A	2.841e^-4	0.789	INTERGENIC
3L	4751169	3L_4751169_SNP [dm3] 3L_4751169_SNP [dm6]	C	A	2.842e^-4	0.789	INTRON RhoGEF64C
X	14402950	X_14402950_SNP [dm3] X_14508917_SNP [dm6]	C	A	2.856e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	15836497	3L_15836497_SNP [dm3] 3L_15843397_SNP [dm6]	C	A	2.858e^-4	0.789	DOWNSTREAM mir-263b INTRON CG32150	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6907909	3L_6907909_SNP [dm3] 3L_6914809_SNP [dm6]	G	A	2.866e^-4	0.789	UTR_5_PRIME Prat2 UPSTREAM Prat2
3L	14295531	3L_14295531_SNP [dm3] 3L_14302431_SNP [dm6]	G	T	2.867e^-4	0.789	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	6263572	3L_6263572_INS [dm3] 3L_6270472_INS [dm6]	A	ACATA	2.871e^-4	0.789	INTERGENIC
3R	13393765	3R_13393765_SNP [dm3] 3R_17568043_SNP [dm6]	C	A	2.878e^-4	0.789	SYNONYMOUS_CODING Hmx UTR_3_PRIME Hmx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3902790	3R_3902790_SNP [dm3] 3R_8077068_SNP [dm6]	A	C	2.887e^-4	0.789	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9882608	3L_9882608_SNP [dm3] 3L_9889508_SNP [dm6]	T	C	2.892e^-4	0.789	SYNONYMOUS_CODING CalpB UPSTREAM Taf2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6425184	3R_6425184_SNP [dm3] 3R_10599462_SNP [dm6]	C	T	2.893e^-4	0.789	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5980305	2R_5980305_SNP [dm3] 2R_10092800_SNP [dm6]	C	T	2.896e^-4	0.789	INTRON CG2269
3L	884407	3L_884407_SNP [dm3] 3L_884407_SNP [dm6]	T	G	2.900e^-4	0.789	INTRON CG32479
3L	15082401	3L_15082401_SNP [dm3] 3L_15089301_SNP [dm6]	G	T	2.903e^-4	0.789	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl
3R	24160342	3R_24160342_SNP [dm3] 3R_28334620_SNP [dm6]	C	A	2.905e^-4	0.789	UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10111160	2R_10111160_SNP [dm3] 2R_14223655_SNP [dm6]	A	C	2.923e^-4	0.789	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
3L	3451327	3L_3451327_SNP [dm3] 3L_3451327_SNP [dm6]	A	T	2.924e^-4	0.789	INTRON eIF5B
X	6829563	X_6829563_SNP [dm3] X_6935530_SNP [dm6]	G	T	2.927e^-4	0.789	INTRON CG14431
2R	14949926	2R_14949926_DEL [dm3] 2R_19062421_DEL [dm6]	ATAT	C	2.941e^-4	0.789	INTERGENIC
2R	12587362	2R_12587362_SNP [dm3] 2R_16699857_SNP [dm6]	A	G	2.943e^-4	0.789	INTRON CG30463
3R	22090890	3R_22090890_SNP [dm3] 3R_26265168_SNP [dm6]	C	G	2.946e^-4	0.789	INTRON CG6154
2R	3255475	2R_3255475_SNP [dm3] 2R_7367970_SNP [dm6]	T	A	2.951e^-4	0.789	INTRON Dscam1
2L	3490720	2L_3490720_SNP [dm3] 2L_3490720_SNP [dm6]	A	C	2.953e^-4	0.789	INTRON CG15414
3R	23870767	3R_23870767_DEL [dm3] 3R_28045045_DEL [dm6]	TTATGAT	T	2.968e^-4	0.789	INTRON CG34362
2R	16765888	2R_16765888_DEL [dm3] 2R_20878383_DEL [dm6]	AC	A	2.969e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
3L	10713187	3L_10713187_SNP [dm3] 3L_10720087_SNP [dm6]	G	T	2.971e^-4	0.789	INTERGENIC
3R	3902807	3R_3902807_SNP [dm3] 3R_8077085_SNP [dm6]	G	T	2.972e^-4	0.789	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10665130	3L_10665130_SNP [dm3] 3L_10672030_SNP [dm6]	T	C	2.987e^-4	0.789	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	14758965	3L_14758965_SNP [dm3] 3L_14765865_SNP [dm6]	T	G	2.988e^-4	0.789	UTR_3_PRIME CG9384	TF binding site mE1_TFBS_cad
2R	16765952	2R_16765952_SNP [dm3] 2R_20878447_SNP [dm6]	C	A	2.989e^-4	0.789	UTR_3_PRIME Ipk1 INTRON Ipk1
2R	13544500	2R_13544500_SNP [dm3] 2R_17656995_SNP [dm6]	A	T	2.994e^-4	0.789	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14503670	3L_14503670_SNP [dm3] 3L_14510570_SNP [dm6]	G	A	2.994e^-4	0.789	UPSTREAM bbg INTRON bbg
3R	24096386	3R_24096386_SNP [dm3] 3R_28270664_SNP [dm6]	C	T	2.994e^-4	0.789	INTERGENIC
3L	14998392	3L_14998392_SNP [dm3] 3L_15005292_SNP [dm6]	C	T	3.007e^-4	0.789	INTRON Reck
3L	14563980	3L_14563980_SNP [dm3] 3L_14570880_SNP [dm6]	T	C	3.008e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20001530	2L_20001530_DEL [dm3] 2L_20001530_DEL [dm6]	ATAGACAA	A	3.014e^-4	0.789	INTRON CG43861
3R	23535187	3R_23535187_SNP [dm3] 3R_27709465_SNP [dm6]	G	A	3.014e^-4	0.789	INTRON CG12877	TF binding site mE1_TFBS_cad
3R	8737791	3R_8737791_SNP [dm3] 3R_12912069_SNP [dm6]	C	T	3.022e^-4	0.789	UPSTREAM CG10909 INTERGENIC
3L	10468490	3L_10468490_SNP [dm3] 3L_10475390_SNP [dm6]	C	A	3.023e^-4	0.789	INTERGENIC
3R	23546209	3R_23546209_SNP [dm3] 3R_27720487_SNP [dm6]	T	C	3.031e^-4	0.789	INTERGENIC
3R	8935762	3R_8935762_DEL [dm3] 3R_13110040_DEL [dm6]	CC	C	3.032e^-4	0.789	INTRON timeout
3R	9757508	3R_9757508_SNP [dm3] 3R_13931786_SNP [dm6]	T	A	3.042e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	5305832	3R_5305832_SNP [dm3] 3R_9480110_SNP [dm6]	G	A	3.043e^-4	0.789	INTRON CG16779
2R	19317638	2R_19317638_SNP [dm3] 2R_23430115_SNP [dm6]	C	T	3.045e^-4	0.789	INTRON CG9815
2R	19276650	2R_19276650_SNP [dm3] 2R_23389127_SNP [dm6]	G	A	3.045e^-4	0.789	UTR_3_PRIME CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_chinmo
2L	7507717	2L_7507717_SNP [dm3] 2L_7507717_SNP [dm6]	G	T	3.046e^-4	0.789	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2809790	3L_2809790_INS [dm3] 3L_2809790_INS [dm6]	G	GTGTAAA	3.049e^-4	0.789	INTRON CG43444	TF binding site mE1_TFBS_cad
X	11238168	X_11238168_SNP [dm3] X_11344135_SNP [dm6]	G	A	3.054e^-4	0.789	UTR_3_PRIME CG34348 DOWNSTREAM CG1597	TF binding site mE1_TFBS_sens
2L	11200910	2L_11200910_SNP [dm3] 2L_11200910_SNP [dm6]	A	C	3.064e^-4	0.789	INTRON Ca-beta
3L	10713183	3L_10713183_DEL [dm3] 3L_10720083_DEL [dm6]	AT	A	3.069e^-4	0.789	INTERGENIC
2R	10580318	2R_10580318_SNP [dm3] 2R_14692813_SNP [dm6]	T	A	3.074e^-4	0.789	INTRON mspo
2L	6089945	2L_6089945_SNP [dm3] 2L_6089945_SNP [dm6]	A	C	3.075e^-4	0.789	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	3773386	X_3773386_SNP [dm3] X_3879353_SNP [dm6]	G	A	3.075e^-4	0.789	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12521889	3R_12521889_SNP [dm3] 3R_16696167_SNP [dm6]	G	A	3.076e^-4	0.789	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	18068853	2L_18068853_SNP [dm3] 2L_18068853_SNP [dm6]	G	A	3.079e^-4	0.789	SYNONYMOUS_CODING rdo
X	12637516	X_12637516_DEL [dm3] X_12743483_DEL [dm6]	TTCTGTT	T	3.088e^-4	0.789	UPSTREAM Smr & 1 other DOWNSTREAM CR45623 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11869992	3R_11869992_SNP [dm3] 3R_16044270_SNP [dm6]	A	T	3.090e^-4	0.789	DOWNSTREAM CG10407 INTRON CG10264
2R	14949916	2R_14949916_DEL [dm3] 2R_19062411_DEL [dm6]	ACA	A	3.103e^-4	0.789	INTERGENIC
2R	3261976	2R_3261976_SNP [dm3] 2R_7374471_SNP [dm6]	C	T	3.115e^-4	0.789	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	21426468	X_21426468_SNP [dm3] X_21555441_SNP [dm6]	T	A	3.117e^-4	0.789	INTERGENIC	transposable element FlyBase
3L	8070243	3L_8070243_SNP [dm3] 3L_8077143_SNP [dm6]	G	A	3.118e^-4	0.789	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13875002	2L_13875002_SNP [dm3] 2L_13875002_SNP [dm6]	T	C	3.120e^-4	0.789	INTRON CenG1A
3L	18592365	3L_18592365_SNP [dm3] 3L_18599265_SNP [dm6]	A	T	3.128e^-4	0.789	DOWNSTREAM CR45390 & 2 others INTERGENIC
2L	6138529	2L_6138529_SNP [dm3] 2L_6138529_SNP [dm6]	T	C	3.146e^-4	0.789	UPSTREAM CG13991 DOWNSTREAM CR44824 INTERGENIC
2R	10102830	2R_10102830_SNP [dm3] 2R_14215325_SNP [dm6]	G	A	3.149e^-4	0.789	UTR_3_PRIME RpS23 DOWNSTREAM RpS23 & 1 other
2R	6723605	2R_6723605_SNP [dm3] 2R_10836100_SNP [dm6]	G	A	3.153e^-4	0.789	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
2R	19296677	2R_19296677_SNP [dm3] 2R_23409154_SNP [dm6]	A	G	3.159e^-4	0.789	INTERGENIC
3R	26032163	3R_26032163_SNP [dm3] 3R_30206441_SNP [dm6]	G	A	3.159e^-4	0.789	DOWNSTREAM RpS7 & 4 others INTERGENIC	TF binding site mE1_TFBS_sens
2L	559530	2L_559530_SNP [dm3] 2L_559530_SNP [dm6]	A	G	3.160e^-4	0.789	UPSTREAM CG2789 & 1 other INTRON rempA	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	18621150	3R_18621150_SNP [dm3] 3R_22795428_SNP [dm6]	G	A	3.164e^-4	0.789	INTERGENIC
3L	6263622	3L_6263622_SNP [dm3] 3L_6270522_SNP [dm6]	A	G	3.170e^-4	0.789	INTERGENIC
2R	10102295	2R_10102295_SNP [dm3] 2R_14214790_SNP [dm6]	G	A	3.172e^-4	0.789	DOWNSTREAM RpS23 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19317682	2R_19317682_SNP [dm3] 2R_23430159_SNP [dm6]	T	A	3.172e^-4	0.789	INTRON CG9815
3L	14162433	3L_14162433_SNP [dm3] 3L_14169333_SNP [dm6]	T	A	3.180e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	6201012	2R_6201012_SNP [dm3] 2R_10313507_SNP [dm6]	C	T	3.182e^-4	0.789	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9330917	2R_9330917_SNP [dm3] 2R_13443412_SNP [dm6]	A	G	3.198e^-4	0.789	SYNONYMOUS_CODING cnn UTR_3_PRIME cnn INTRON cnn
2R	9330997	2R_9330997_SNP [dm3] 2R_13443492_SNP [dm6]	A	C	3.198e^-4	0.789	NON_SYNONYMOUS_CODING cnn UTR_3_PRIME cnn INTRON cnn
3L	14736873	3L_14736873_SNP [dm3] 3L_14743773_SNP [dm6]	C	T	3.203e^-4	0.789	INTRON ome	TF binding site BDTNP1_TFBS_z
2R	11959601	2R_11959601_SNP [dm3] 2R_16072096_SNP [dm6]	T	C	3.208e^-4	0.789	INTERGENIC
2L	9338387	2L_9338387_SNP [dm3] 2L_9338387_SNP [dm6]	C	A	3.210e^-4	0.789	INTRON Eaat1
2R	19926808	2R_19926808_SNP [dm3] 2R_24039285_SNP [dm6]	T	A	3.212e^-4	0.789	SYNONYMOUS_CODING IntS1
3L	9433149	3L_9433149_SNP [dm3] 3L_9440049_SNP [dm6]	T	G	3.217e^-4	0.789	DOWNSTREAM Nf-YA & 1 other INTRON Bet3	transposable element FlyBase
2R	14720949	2R_14720949_SNP [dm3] 2R_18833444_SNP [dm6]	T	A	3.218e^-4	0.789	UTR_3_PRIME CG15098 DOWNSTREAM CG15082
X	13918905	X_13918905_DEL [dm3] X_14024872_DEL [dm6]	TGTAAAAAT	T	3.228e^-4	0.789	DOWNSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	7495537	2R_7495537_SNP [dm3] 2R_11608032_SNP [dm6]	T	C	3.232e^-4	0.789	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21750288	3R_21750288_SNP [dm3] 3R_25924566_SNP [dm6]	T	G	3.240e^-4	0.789	SYNONYMOUS_CODING CCAP-R
3L	14414855	3L_14414855_SNP [dm3] 3L_14421755_SNP [dm6]	C	G	3.261e^-4	0.789	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22684852	3R_22684852_SNP [dm3] 3R_26859130_SNP [dm6]	C	T	3.262e^-4	0.789	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	18076771	2L_18076771_SNP [dm3] 2L_18076771_SNP [dm6]	T	G	3.268e^-4	0.789	INTERGENIC
2L	13876135	2L_13876135_SNP [dm3] 2L_13876135_SNP [dm6]	C	T	3.270e^-4	0.789	INTRON CenG1A
3R	13354898	3R_13354898_SNP [dm3] 3R_17529176_SNP [dm6]	G	T	3.281e^-4	0.789	INTERGENIC
2L	16043708	2L_16043708_SNP [dm3] 2L_16043708_SNP [dm6]	G	A	3.281e^-4	0.789	UPSTREAM BicC INTRON BicC & 1 other
3R	8771940	3R_8771940_SNP [dm3] 3R_12946218_SNP [dm6]	G	T	3.281e^-4	0.789	INTERGENIC
2R	17086781	2R_17086781_SNP [dm3] 2R_21199276_SNP [dm6]	C	T	3.284e^-4	0.789	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14998429	3L_14998429_SNP [dm3] 3L_15005329_SNP [dm6]	C	A	3.284e^-4	0.789	INTRON Reck
3L	14998438	3L_14998438_SNP [dm3] 3L_15005338_SNP [dm6]	C	G	3.284e^-4	0.789	INTRON Reck
3L	4303093	3L_4303093_SNP [dm3] 3L_4303093_SNP [dm6]	G	A	3.286e^-4	0.789	INTRON dyl
2L	18525590	2L_18525590_SNP [dm3] 2L_18525590_SNP [dm6]	C	A	3.287e^-4	0.789	INTRON CG10211
3R	21623025	3R_21623025_MNP [dm3] 3R_25797303_MNP [dm6]	GAA	CTG	3.289e^-4	0.789	EXON CR43847
X	16746721	X_16746721_SNP [dm3] X_16852688_SNP [dm6]	T	A	3.294e^-4	0.789	INTRON CG13003
3R	20741464	3R_20741464_SNP [dm3] 3R_24915742_SNP [dm6]	A	T	3.296e^-4	0.789	SPLICE_SITE_REGION PIG-S UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S
3R	20741467	3R_20741467_SNP [dm3] 3R_24915745_SNP [dm6]	T	A	3.296e^-4	0.789	UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S
3R	20741481	3R_20741481_SNP [dm3] 3R_24915759_SNP [dm6]	T	A	3.296e^-4	0.789	UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S
X	12331049	X_12331049_SNP [dm3] X_12437016_SNP [dm6]	T	A	3.300e^-4	0.789	INTRON Pkcdelta
3L	12900672	3L_12900672_SNP [dm3] 3L_12907572_SNP [dm6]	T	A	3.302e^-4	0.789	INTERGENIC
3L	22363275	3L_22363275_SNP [dm3] 3L_22370175_SNP [dm6]	G	A	3.303e^-4	0.789	INTRON Ten-m
3L	6907545	3L_6907545_SNP [dm3] 3L_6914445_SNP [dm6]	G	C	3.314e^-4	0.789	NON_SYNONYMOUS_CODING Prat2 UPSTREAM Prat2	silencer mE1_HDAC_PRE
3L	6609756	3L_6609756_SNP [dm3] 3L_6616656_SNP [dm6]	C	T	3.330e^-4	0.789	INTRON CG8398	TF binding site mE1_TFBS_cad
3L	17540920	3L_17540920_SNP [dm3] 3L_17547820_SNP [dm6]	A	G	3.338e^-4	0.789	DOWNSTREAM Jon74E INTRON Jon74E
3R	13362624	3R_13362624_SNP [dm3] 3R_17536902_SNP [dm6]	T	A	3.341e^-4	0.789	UTR_3_PRIME P5cr-2 DOWNSTREAM l_3_07882
X	3773357	X_3773357_SNP [dm3] X_3879324_SNP [dm6]	A	C	3.345e^-4	0.789	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4887093	3L_4887093_SNP [dm3] 3L_4887093_SNP [dm6]	T	G	3.349e^-4	0.789	INTRON CG17150
2L	16001424	2L_16001424_SNP [dm3] 2L_16001424_SNP [dm6]	G	A	3.351e^-4	0.789	UPSTREAM CR43825 INTRON beat-Ic
X	6021124	X_6021124_SNP [dm3] X_6127091_SNP [dm6]	G	T	3.352e^-4	0.789	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	3.353e^-4	0.789	INTERGENIC
3L	1381081	3L_1381081_DEL [dm3] 3L_1381081_DEL [dm6]	AGA	A	3.356e^-4	0.789	DOWNSTREAM tRNA:CR32328 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16530769	2R_16530769_SNP [dm3] 2R_20643264_SNP [dm6]	T	C	3.361e^-4	0.789	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 UPSTREAM DMAP1 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4439243	2R_4439243_SNP [dm3] 2R_8551738_SNP [dm6]	G	T	3.361e^-4	0.789	DOWNSTREAM CG12780 INTERGENIC
2L	13966546	2L_13966546_SNP [dm3] 2L_13966546_SNP [dm6]	T	G	3.362e^-4	0.789	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB3	TF binding site mE1_TFBS_chinmo
2R	16764353	2R_16764353_SNP [dm3] 2R_20876848_SNP [dm6]	G	C	3.367e^-4	0.789	INTRON Ipk1
3R	12522249	3R_12522249_SNP [dm3] 3R_16696527_SNP [dm6]	G	T	3.367e^-4	0.789	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12623872	3L_12623872_SNP [dm3] 3L_12630772_SNP [dm6]	G	A	3.368e^-4	0.789	INTRON CR32111
2L	18088361	2L_18088361_SNP [dm3] 2L_18088361_SNP [dm6]	C	A	3.369e^-4	0.789	INTERGENIC
3L	16718710	3L_16718710_SNP [dm3] 3L_16725610_SNP [dm6]	A	C	3.373e^-4	0.789	UTR_3_PRIME CG13026 UPSTREAM PGRP-SB2 DOWNSTREAM CG13031
X	17319904	X_17319904_SNP [dm3] X_17425871_SNP [dm6]	A	T	3.380e^-4	0.789	UPSTREAM CG5613 INTRON CG12994 & 1 other
3R	24128390	3R_24128390_SNP [dm3] 3R_28302668_SNP [dm6]	G	A	3.382e^-4	0.789	DOWNSTREAM CG12516 INTERGENIC
3L	17633789	3L_17633789_SNP [dm3] 3L_17640689_SNP [dm6]	A	T	3.384e^-4	0.789	INTRON Pep
3L	4775463	3L_4775463_SNP [dm3] 3L_4775463_SNP [dm6]	G	A	3.387e^-4	0.789	INTRON RhoGEF64C
3L	14998446	3L_14998446_SNP [dm3] 3L_15005346_SNP [dm6]	C	T	3.390e^-4	0.789	INTRON Reck
2L	16001449	2L_16001449_SNP [dm3] 2L_16001449_SNP [dm6]	T	A	3.391e^-4	0.789	UPSTREAM CR43825 INTRON beat-Ic
3R	2872563	3R_2872563_SNP [dm3] 3R_7046841_SNP [dm6]	C	T	3.395e^-4	0.789	INTERGENIC
3R	16954348	3R_16954348_SNP [dm3] 3R_21128626_SNP [dm6]	T	C	3.398e^-4	0.789	SYNONYMOUS_CODING CG5793 DOWNSTREAM Obp93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6134352	2L_6134352_SNP [dm3] 2L_6134352_SNP [dm6]	G	A	3.398e^-4	0.789	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2579429	3L_2579429_SNP [dm3] 3L_2579429_SNP [dm6]	A	C	3.399e^-4	0.789	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18897161	3R_18897161_SNP [dm3] 3R_23071439_SNP [dm6]	C	G	3.401e^-4	0.789	UTR_3_PRIME CG13830
3R	13365869	3R_13365869_SNP [dm3] 3R_17540147_SNP [dm6]	T	C	3.406e^-4	0.789	UPSTREAM SF1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	13472469	2R_13472469_SNP [dm3] 2R_17584964_SNP [dm6]	T	A	3.413e^-4	0.789	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
3R	22824299	3R_22824299_SNP [dm3] 3R_26998577_SNP [dm6]	T	G	3.414e^-4	0.789	INTRON RYa-R
3L	4774789	3L_4774789_SNP [dm3] 3L_4774789_SNP [dm6]	A	G	3.418e^-4	0.789	INTRON RhoGEF64C
3L	3001009	3L_3001009_SNP [dm3] 3L_3001009_SNP [dm6]	C	T	3.424e^-4	0.789	UPSTREAM FMRFaR INTERGENIC
2L	1165392	2L_1165392_SNP [dm3] 2L_1165392_SNP [dm6]	A	G	3.424e^-4	0.789	SYNONYMOUS_CODING IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20741532	3R_20741532_SNP [dm3] 3R_24915810_SNP [dm6]	T	C	3.442e^-4	0.789	UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S	TF binding site mE1_TFBS_cad
2R	8937576	2R_8937576_SNP [dm3] 2R_13050071_SNP [dm6]	T	C	3.444e^-4	0.789	UPSTREAM CG13324 INTERGENIC
3R	11207631	3R_11207631_SNP [dm3] 3R_15381909_SNP [dm6]	A	T	3.444e^-4	0.789	UTR_3_PRIME h-cup INTRON Rbp
2R	19134629	2R_19134629_SNP [dm3] 2R_23247106_SNP [dm6]	G	A	3.447e^-4	0.789	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1830881	3R_1830881_SNP [dm3] 3R_6005159_SNP [dm6]	C	T	3.451e^-4	0.789	INTRON Rm62
3R	25377352	3R_25377352_SNP [dm3] 3R_29551630_SNP [dm6]	T	C	3.453e^-4	0.789	INTERGENIC
3R	21749990	3R_21749990_SNP [dm3] 3R_25924268_SNP [dm6]	G	T	3.458e^-4	0.789	UTR_3_PRIME CCAP-R
2L	1165444	2L_1165444_SNP [dm3] 2L_1165444_SNP [dm6]	T	G	3.461e^-4	0.789	NON_SYNONYMOUS_CODING IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21959454	X_21959454_SNP [dm3] X_22557618_SNP [dm6]	G	A	3.473e^-4	0.789	INTERGENIC	transposable element FlyBase
2R	18344230	2R_18344230_SNP [dm3] 2R_22456725_SNP [dm6]	T	A	3.473e^-4	0.789	INTRON CG10384
2L	12858798	2L_12858798_SNP [dm3] 2L_12858798_SNP [dm6]	G	C	3.476e^-4	0.789	INTERGENIC
3L	4775438	3L_4775438_SNP [dm3] 3L_4775438_SNP [dm6]	T	A	3.478e^-4	0.789	INTRON RhoGEF64C
2L	15367149	2L_15367149_SNP [dm3] 2L_15367149_SNP [dm6]	G	A	3.484e^-4	0.789	INTERGENIC
3L	9331157	3L_9331157_SNP [dm3] 3L_9338057_SNP [dm6]	T	C	3.492e^-4	0.789	UTR_3_PRIME PGRP-LA UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA
2L	9338149	2L_9338149_SNP [dm3] 2L_9338149_SNP [dm6]	T	G	3.497e^-4	0.789	UTR_5_PRIME Eaat1
3L	4293452	3L_4293452_SNP [dm3] 3L_4293452_SNP [dm6]	A	G	3.499e^-4	0.789	DOWNSTREAM dyl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10178501	X_10178501_DEL [dm3] X_10284468_DEL [dm6]	AG	A	3.502e^-4	0.789	INTRON alpha-Man-I
2L	9983576	2L_9983576_SNP [dm3] 2L_9983576_SNP [dm6]	A	G	3.504e^-4	0.789	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	26032164	3R_26032164_SNP [dm3] 3R_30206442_SNP [dm6]	A	C	3.504e^-4	0.789	DOWNSTREAM RpS7 & 4 others INTERGENIC	TF binding site mE1_TFBS_sens
2R	6140078	2R_6140078_SNP [dm3] 2R_10252573_SNP [dm6]	T	C	3.509e^-4	0.789	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	2714639	3L_2714639_SNP [dm3] 3L_2714639_SNP [dm6]	G	A	3.537e^-4	0.789	INTERGENIC
2L	18075072	2L_18075072_SNP [dm3] 2L_18075072_SNP [dm6]	A	G	3.545e^-4	0.789	INTERGENIC
X	16918923	X_16918923_SNP [dm3] X_17024890_SNP [dm6]	T	C	3.551e^-4	0.789	DOWNSTREAM CG43997 INTRON CG45002
X	20501878	X_20501878_SNP [dm3] X_20630851_SNP [dm6]	G	C	3.551e^-4	0.789	INTERGENIC
2L	12859900	2L_12859900_SNP [dm3] 2L_12859900_SNP [dm6]	G	A	3.552e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	19329818	2R_19329818_SNP [dm3] 2R_23442295_SNP [dm6]	G	A	3.559e^-4	0.789	INTERGENIC
2R	19329820	2R_19329820_SNP [dm3] 2R_23442297_SNP [dm6]	G	T	3.559e^-4	0.789	INTERGENIC
2R	16765971	2R_16765971_SNP [dm3] 2R_20878466_SNP [dm6]	A	G	3.560e^-4	0.789	DOWNSTREAM Ipk1 INTRON Ipk1
3L	6595391	3L_6595391_SNP [dm3] 3L_6602291_SNP [dm6]	C	T	3.563e^-4	0.789	SYNONYMOUS_CODING ndl
3L	9432989	3L_9432989_SNP [dm3] 3L_9439889_SNP [dm6]	A	G	3.565e^-4	0.789	DOWNSTREAM Nf-YA & 1 other INTRON Bet3	transposable element FlyBase
3L	2677301	3L_2677301_SNP [dm3] 3L_2677301_SNP [dm6]	G	T	3.565e^-4	0.789	INTRON Fife
2L	4166188	2L_4166188_SNP [dm3] 2L_4166188_SNP [dm6]	T	G	3.569e^-4	0.789	UPSTREAM Or24a INTERGENIC
3R	24187116	3R_24187116_SNP [dm3] 3R_28361394_SNP [dm6]	G	A	3.573e^-4	0.789	INTERGENIC
3L	2402800	3L_2402800_SNP [dm3] 3L_2402800_SNP [dm6]	G	A	3.574e^-4	0.789	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
X	6834537	X_6834537_SNP [dm3] X_6940504_SNP [dm6]	T	C	3.579e^-4	0.789	INTRON CG14431
3L	1412167	3L_1412167_SNP [dm3] 3L_1412167_SNP [dm6]	G	A	3.580e^-4	0.789	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site mE1_TFBS_sens
3L	11432805	3L_11432805_SNP [dm3] 3L_11439705_SNP [dm6]	C	T	3.583e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2513300	3L_2513300_SNP [dm3] 3L_2513300_SNP [dm6]	T	G	3.584e^-4	0.789	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16274049	3L_16274049_SNP [dm3] 3L_16280949_SNP [dm6]	T	A	3.585e^-4	0.789	DOWNSTREAM CG13049 & 1 other INTERGENIC
3R	27289434	3R_27289434_SNP [dm3] 3R_31463712_SNP [dm6]	C	T	3.590e^-4	0.789	SYNONYMOUS_CODING CG11333 UPSTREAM CG11334	TF binding site mE1_TFBS_sens
3R	13469525	3R_13469525_SNP [dm3] 3R_17643803_SNP [dm6]	G	A	3.599e^-4	0.789	UPSTREAM CG43175 INTRON CG43175
3R	11452698	3R_11452698_SNP [dm3] 3R_15626976_SNP [dm6]	A	T	3.603e^-4	0.789	INTERGENIC
2L	9983633	2L_9983633_SNP [dm3] 2L_9983633_SNP [dm6]	A	G	3.612e^-4	0.789	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5045247	3L_5045247_SNP [dm3] 3L_5045247_SNP [dm6]	T	A	3.619e^-4	0.789	INTRON Con
2L	13241254	2L_13241254_SNP [dm3] 2L_13241254_SNP [dm6]	A	G	3.624e^-4	0.789	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23679794	3R_23679794_DEL [dm3] 3R_27854072_DEL [dm6]	CGCC	C	3.629e^-4	0.789	INTRON CG34353
2L	18075126	2L_18075126_SNP [dm3] 2L_18075126_SNP [dm6]	C	A	3.632e^-4	0.789	INTERGENIC
3L	10713165	3L_10713165_SNP [dm3] 3L_10720065_SNP [dm6]	C	T	3.635e^-4	0.789	INTERGENIC
2L	2278374	2L_2278374_SNP [dm3] 2L_2278374_SNP [dm6]	A	T	3.644e^-4	0.789	INTRON CR43753 EXON CR43753
2L	16841946	2L_16841946_DEL [dm3] 2L_16841946_DEL [dm6]	AA	A	3.644e^-4	0.789	DOWNSTREAM CG13284 & 2 others INTERGENIC
3R	9767789	3R_9767789_SNP [dm3] 3R_13942067_SNP [dm6]	G	A	3.658e^-4	0.789	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	3451326	3L_3451326_SNP [dm3] 3L_3451326_SNP [dm6]	A	G	3.663e^-4	0.789	INTRON eIF5B
3L	2474081	3L_2474081_SNP [dm3] 3L_2474081_SNP [dm6]	A	G	3.668e^-4	0.789	DOWNSTREAM CG16762 INTRON CG45186
2R	6047347	2R_6047347_SNP [dm3] 2R_10159842_SNP [dm6]	A	T	3.675e^-4	0.789	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12449834	2R_12449834_SNP [dm3] 2R_16562329_SNP [dm6]	C	T	3.687e^-4	0.789	INTRON DAT
3L	15650808	3L_15650808_SNP [dm3] 3L_15657708_SNP [dm6]	G	A	3.689e^-4	0.789	UPSTREAM Eig71Ef INTRON Eig71Eg
3L	4890285	3L_4890285_SNP [dm3] 3L_4890285_SNP [dm6]	T	A	3.691e^-4	0.789	INTRON CG17150
3L	1454379	3L_1454379_SNP [dm3] 3L_1454379_SNP [dm6]	T	A	3.696e^-4	0.789	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	9822057	3L_9822057_SNP [dm3] 3L_9828957_SNP [dm6]	T	A	3.696e^-4	0.789	UPSTREAM CG43897 INTRON CG43897
2L	13975383	2L_13975383_SNP [dm3] 2L_13975383_SNP [dm6]	C	T	3.698e^-4	0.789	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23548031	3R_23548031_SNP [dm3] 3R_27722309_SNP [dm6]	C	T	3.700e^-4	0.789	INTERGENIC
2L	18893284	2L_18893284_SNP [dm3] 2L_18893284_SNP [dm6]	T	C	3.715e^-4	0.789	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10713111	3L_10713111_SNP [dm3] 3L_10720011_SNP [dm6]	A	G	3.717e^-4	0.789	INTERGENIC
2R	19258956	2R_19258956_SNP [dm3] 2R_23371433_SNP [dm6]	G	A	3.717e^-4	0.789	UTR_3_PRIME Ice1 & 1 other
3R	8402941	3R_8402941_SNP [dm3] 3R_12577219_SNP [dm6]	G	T	3.719e^-4	0.789	INTRON Octbeta2R
3R	12502561	3R_12502561_SNP [dm3] 3R_16676839_SNP [dm6]	A	T	3.721e^-4	0.789	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	15765306	3L_15765306_SNP [dm3] 3L_15772206_SNP [dm6]	A	G	3.730e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16231592	X_16231592_SNP [dm3] X_16337559_SNP [dm6]	T	G	3.738e^-4	0.789	SPLICE_SITE_REGION Dsp1 INTRON Dsp1	TF binding site mE1_TFBS_cad
3L	11835914	3L_11835914_SNP [dm3] 3L_11842814_SNP [dm6]	G	T	3.747e^-4	0.789	INTERGENIC
2R	9777240	2R_9777240_SNP [dm3] 2R_13889735_SNP [dm6]	C	T	3.747e^-4	0.789	SYNONYMOUS_CODING shot INTRON shot
3L	4775334	3L_4775334_SNP [dm3] 3L_4775334_SNP [dm6]	G	T	3.748e^-4	0.789	INTRON RhoGEF64C
2R	18792342	2R_18792342_SNP [dm3] 2R_22904819_SNP [dm6]	T	C	3.764e^-4	0.789	INTRON nahoda
2L	5809333	2L_5809333_SNP [dm3] 2L_5809333_SNP [dm6]	G	A	3.773e^-4	0.789	UPSTREAM CR44575 DOWNSTREAM CG11034 INTERGENIC
3L	15835659	3L_15835659_SNP [dm3] 3L_15842559_SNP [dm6]	A	G	3.780e^-4	0.789	DOWNSTREAM mir-263b INTRON CG32150
3R	18175136	3R_18175136_SNP [dm3] 3R_22349414_SNP [dm6]	T	A	3.782e^-4	0.789	INTERGENIC
X	21960490	X_21960490_SNP [dm3] X_22558654_SNP [dm6]	T	C	3.788e^-4	0.789	INTERGENIC	transposable element FlyBase
3L	9628841	3L_9628841_SNP [dm3] 3L_9635741_SNP [dm6]	C	T	3.796e^-4	0.789	SYNONYMOUS_CODING fry
X	9225148	X_9225148_SNP [dm3] X_9331115_SNP [dm6]	G	A	3.806e^-4	0.789	UTR_3_PRIME CG34449 UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
X	21426458	X_21426458_SNP [dm3] X_21555431_SNP [dm6]	G	A	3.809e^-4	0.789	INTERGENIC	transposable element FlyBase
2L	4636468	2L_4636468_SNP [dm3] 2L_4636468_SNP [dm6]	A	T	3.820e^-4	0.789	INTERGENIC
3L	3123713	3L_3123713_SNP [dm3] 3L_3123713_SNP [dm6]	A	G	3.821e^-4	0.789	UPSTREAM prominin-like INTRON prominin-like
2R	19136919	2R_19136919_SNP [dm3] 2R_23249396_SNP [dm6]	C	A	3.823e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14998451	3L_14998451_SNP [dm3] 3L_15005351_SNP [dm6]	T	G	3.829e^-4	0.789	INTRON Reck
X	8397999	X_8397999_DEL [dm3] X_8503966_DEL [dm6]	TT	T	3.832e^-4	0.789	INTRON CG33181
3L	15602343	3L_15602343_SNP [dm3] 3L_15609243_SNP [dm6]	A	T	3.834e^-4	0.789	UTR_3_PRIME CG7650 DOWNSTREAM RhoGAP71E
2R	12532238	2R_12532238_SNP [dm3] 2R_16644733_SNP [dm6]	A	T	3.838e^-4	0.789	INTRON gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4270441	3L_4270441_SNP [dm3] 3L_4270441_SNP [dm6]	T	C	3.842e^-4	0.789	INTRON CG1273	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15302819	2L_15302819_SNP [dm3] 2L_15302819_SNP [dm6]	A	G	3.847e^-4	0.789	INTERGENIC
3R	3902806	3R_3902806_SNP [dm3] 3R_8077084_SNP [dm6]	C	T	3.857e^-4	0.789	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13778594	3R_13778594_SNP [dm3] 3R_17952872_SNP [dm6]	T	C	3.859e^-4	0.789	INTRON cpo	TF binding site mE1_TFBS_cad
3L	4913736	3L_4913736_SNP [dm3] 3L_4913736_SNP [dm6]	A	T	3.863e^-4	0.789	SYNONYMOUS_CODING Rh50	TF binding site BDTNP1_TFBS_sna
X	20734887	X_20734887_SNP [dm3] X_20863860_SNP [dm6]	A	G	3.876e^-4	0.789	UPSTREAM CG43193 INTRON shakB
X	19039206	X_19039206_SNP [dm3] X_19145173_SNP [dm6]	A	G	3.880e^-4	0.789	INTRON RhoGAP18B
3L	18869295	3L_18869295_SNP [dm3] 3L_18876195_SNP [dm6]	G	T	3.880e^-4	0.789	SYNONYMOUS_CODING Ugt
2L	13875937	2L_13875937_SNP [dm3] 2L_13875937_SNP [dm6]	G	A	3.886e^-4	0.789	INTRON CenG1A
2R	19232764	2R_19232764_SNP [dm3] 2R_23345241_SNP [dm6]	G	A	3.890e^-4	0.789	SYNONYMOUS_CODING CG3502
3L	4303110	3L_4303110_SNP [dm3] 3L_4303110_SNP [dm6]	C	T	3.893e^-4	0.789	INTRON dyl
3R	26243276	3R_26243276_SNP [dm3] 3R_30417554_SNP [dm6]	A	C	3.915e^-4	0.789	INTERGENIC
2R	19113268	2R_19113268_SNP [dm3] 2R_23225745_SNP [dm6]	C	T	3.925e^-4	0.789	INTERGENIC
3R	19970794	3R_19970794_SNP [dm3] 3R_24145072_SNP [dm6]	A	G	3.933e^-4	0.789	INTRON Kal1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13878672	2L_13878672_SNP [dm3] 2L_13878672_SNP [dm6]	C	G	3.934e^-4	0.789	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11173773	3L_11173773_SNP [dm3] 3L_11180673_SNP [dm6]	A	G	3.936e^-4	0.789	INTRON GlcAT-P
2R	17597834	2R_17597834_SNP [dm3] 2R_21710329_SNP [dm6]	A	G	3.943e^-4	0.789	NON_SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
3L	2659632	3L_2659632_SNP [dm3] 3L_2659632_SNP [dm6]	G	T	3.945e^-4	0.789	UPSTREAM CG33233 INTRON Fife
X	6829537	X_6829537_SNP [dm3] X_6935504_SNP [dm6]	A	G	3.948e^-4	0.789	INTRON CG14431
3L	4130022	3L_4130022_SNP [dm3] 3L_4130022_SNP [dm6]	T	A	3.969e^-4	0.789	INTRON ens
X	7005507	X_7005507_SNP [dm3] X_7111474_SNP [dm6]	A	G	3.971e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	17711905	2L_17711905_SNP [dm3] 2L_17711905_SNP [dm6]	A	G	3.978e^-4	0.789	INTRON CadN
3R	23610409	3R_23610409_SNP [dm3] 3R_27784687_SNP [dm6]	T	A	3.982e^-4	0.789	INTRON CG34353
3R	20741658	3R_20741658_SNP [dm3] 3R_24915936_SNP [dm6]	G	A	3.984e^-4	0.789	UTR_3_PRIME CG44254 UPSTREAM tRNA:CR31416 INTRON PIG-S	TF binding site mE1_TFBS_cad
X	12534060	X_12534060_SNP [dm3] X_12640027_SNP [dm6]	A	C	3.991e^-4	0.789	INTRON Tomosyn
3L	23944819	3L_23944819_SNP [dm3] 3L_23951719_SNP [dm6]	A	C	4.002e^-4	0.789	INTRON CG40470
2R	10953393	2R_10953393_SNP [dm3] 2R_15065888_SNP [dm6]	T	C	4.002e^-4	0.789	INTERGENIC
3L	9027622	3L_9027622_SNP [dm3] 3L_9034522_SNP [dm6]	T	C	4.003e^-4	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13152608	3R_13152608_SNP [dm3] 3R_17326886_SNP [dm6]	A	T	4.006e^-4	0.789	INTRON beat-IIa
3L	22363511	3L_22363511_SNP [dm3] 3L_22370411_SNP [dm6]	T	C	4.013e^-4	0.789	INTRON Ten-m
2R	8937688	2R_8937688_SNP [dm3] 2R_13050183_SNP [dm6]	G	T	4.019e^-4	0.789	UPSTREAM CG13324 INTERGENIC
3L	12621767	3L_12621767_SNP [dm3] 3L_12628667_SNP [dm6]	T	C	4.026e^-4	0.789	INTRON CR32111	TF binding site mE1_TFBS_Trl
3R	13415548	3R_13415548_SNP [dm3] 3R_17589826_SNP [dm6]	G	A	4.032e^-4	0.789	INTERGENIC
2L	6273258	2L_6273258_MNP [dm3] 2L_6273258_MNP [dm6]	GCATTCT	AAAAATA	4.047e^-4	0.789	INTRON Ddr
2R	13275573	2R_13275573_SNP [dm3] 2R_17388068_SNP [dm6]	G	A	4.053e^-4	0.789	INTRON CR44344
3R	25538861	3R_25538861_SNP [dm3] 3R_29713139_SNP [dm6]	T	A	4.054e^-4	0.789	DOWNSTREAM CR45569 INTERGENIC
3R	16897008	3R_16897008_SNP [dm3] 3R_21071286_SNP [dm6]	T	G	4.065e^-4	0.789	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17152005	3L_17152005_INS [dm3] 3L_17158905_INS [dm6]	A	AGAATA	4.071e^-4	0.789	INTRON Rbp6
3L	15684752	3L_15684752_SNP [dm3] 3L_15691652_SNP [dm6]	G	A	4.081e^-4	0.789	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6629211	3R_6629211_SNP [dm3] 3R_10803489_SNP [dm6]	G	T	4.082e^-4	0.789	NON_SYNONYMOUS_CODING CG14692
3L	11471821	3L_11471821_SNP [dm3] 3L_11478721_SNP [dm6]	A	T	4.085e^-4	0.789	INTERGENIC
2L	7263573	2L_7263573_SNP [dm3] 2L_7263573_SNP [dm6]	A	G	4.089e^-4	0.789	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18326146	3L_18326146_SNP [dm3] 3L_18333046_SNP [dm6]	G	A	4.091e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5797697	2L_5797697_DEL [dm3] 2L_5797697_DEL [dm6]	CTAGCAAAGAGAAATTC...	C	4.093e^-4	0.789	INTRON CG9171
2L	2182058	2L_2182058_SNP [dm3] 2L_2182058_SNP [dm6]	T	A	4.099e^-4	0.789	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13477618	3R_13477618_DEL [dm3] 3R_17651896_DEL [dm6]	AAATGCCTGT	A	4.109e^-4	0.789	DOWNSTREAM CR45223 INTRON CG14322
2R	18403620	2R_18403620_SNP [dm3] 2R_22516115_SNP [dm6]	A	G	4.114e^-4	0.789	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13478072	3R_13478072_SNP [dm3] 3R_17652350_SNP [dm6]	T	C	4.115e^-4	0.789	INTRON CG14322 EXON CR45223
2L	2288314	2L_2288314_SNP [dm3] 2L_2288314_SNP [dm6]	T	A	4.133e^-4	0.789	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
2R	14372858	2R_14372858_SNP [dm3] 2R_18485353_SNP [dm6]	A	G	4.134e^-4	0.789	INTRON CG30116
X	21959388	X_21959388_SNP [dm3] X_22557552_SNP [dm6]	A	C	4.138e^-4	0.789	INTERGENIC	transposable element FlyBase
3L	16659210	3L_16659210_SNP [dm3] 3L_16666110_SNP [dm6]	G	A	4.142e^-4	0.789	INTRON Galphaf
3R	11080781	3R_11080781_SNP [dm3] 3R_15255059_SNP [dm6]	A	G	4.143e^-4	0.789	NON_SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad
3R	13477879	3R_13477879_SNP [dm3] 3R_17652157_SNP [dm6]	T	A	4.148e^-4	0.789	DOWNSTREAM CR45223 INTRON CG14322
3R	13477913	3R_13477913_SNP [dm3] 3R_17652191_SNP [dm6]	G	A	4.148e^-4	0.789	INTRON CG14322 EXON CR45223
3L	13855105	3L_13855105_SNP [dm3] 3L_13862005_SNP [dm6]	G	A	4.157e^-4	0.789	SYNONYMOUS_CODING CG8745
3L	2672027	3L_2672027_SNP [dm3] 3L_2672027_SNP [dm6]	T	C	4.158e^-4	0.789	UTR_3_PRIME Fife INTRON Fife
3R	21802091	3R_21802091_SNP [dm3] 3R_25976369_SNP [dm6]	C	T	4.164e^-4	0.789	INTRON CG42261
2L	10670445	2L_10670445_SNP [dm3] 2L_10670445_SNP [dm6]	G	T	4.168e^-4	0.789	INTRON CG31871	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12521915	3R_12521915_DEL [dm3] 3R_16696193_DEL [dm6]	GC	G	4.169e^-4	0.789	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	8874858	X_8874858_INS [dm3] X_8980825_INS [dm6]	G	CCATTAATCTACTA...	4.181e^-4	0.789	INTRON rdgA & 1 other
X	16516140	X_16516140_SNP [dm3] X_16622107_SNP [dm6]	G	A	4.182e^-4	0.789	UPSTREAM CG9782 INTERGENIC
3L	15688904	3L_15688904_SNP [dm3] 3L_15695804_SNP [dm6]	G	T	4.182e^-4	0.789	INTERGENIC
3R	20901855	3R_20901855_SNP [dm3] 3R_25076133_SNP [dm6]	G	T	4.183e^-4	0.789	NON_SYNONYMOUS_CODING CG11920	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21960558	X_21960558_SNP [dm3] X_22558722_SNP [dm6]	G	C	4.185e^-4	0.789	INTERGENIC	transposable element FlyBase
X	11170152	X_11170152_DEL [dm3] X_11276119_DEL [dm6]	TT	T	4.187e^-4	0.789	INTRON CG44422
2L	11397742	2L_11397742_DEL [dm3] 2L_11397742_DEL [dm6]	AAACCTTTTA	A	4.190e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs
3R	25538857	3R_25538857_SNP [dm3] 3R_29713135_SNP [dm6]	T	A	4.195e^-4	0.789	DOWNSTREAM CR45569 INTERGENIC
3L	6595784	3L_6595784_SNP [dm3] 3L_6602684_SNP [dm6]	G	T	4.195e^-4	0.789	UPSTREAM CG8368 INTRON ndl
3L	12986899	3L_12986899_DEL [dm3] 3L_12993799_DEL [dm6]	AGTGCAATGAA...	A	4.198e^-4	0.789	INTERGENIC
X	10895154	X_10895154_SNP [dm3] X_11001121_SNP [dm6]	A	C	4.212e^-4	0.789	INTRON CG42339
3R	3978057	3R_3978057_SNP [dm3] 3R_8152335_SNP [dm6]	C	T	4.217e^-4	0.789	INTRON grn	TF binding site BDTNP1_TFBS_dl
3R	10557251	3R_10557251_SNP [dm3] 3R_14731529_SNP [dm6]	G	T	4.218e^-4	0.789	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13320506	3R_13320506_SNP [dm3] 3R_17494784_SNP [dm6]	C	G	4.227e^-4	0.789	INTRON Dscam3
3R	14137231	3R_14137231_SNP [dm3] 3R_18311509_SNP [dm6]	G	C	4.233e^-4	0.789	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12073820	2R_12073820_SNP [dm3] 2R_16186315_SNP [dm6]	C	T	4.234e^-4	0.789	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9373716	3L_9373716_SNP [dm3] 3L_9380616_SNP [dm6]	C	T	4.239e^-4	0.789	EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7238400	X_7238400_SNP [dm3] X_7344367_SNP [dm6]	T	G	4.242e^-4	0.789	INTRON CR44357 & 1 other
3L	10918877	3L_10918877_SNP [dm3] 3L_10925777_SNP [dm6]	C	A	4.244e^-4	0.789	INTERGENIC
3R	24089157	3R_24089157_SNP [dm3] 3R_28263435_SNP [dm6]	T	G	4.257e^-4	0.789	DOWNSTREAM CG43124 INTRON CG43125
2L	17645865	2L_17645865_SNP [dm3] 2L_17645865_SNP [dm6]	T	G	4.261e^-4	0.789	INTERGENIC
X	3773471	X_3773471_SNP [dm3] X_3879438_SNP [dm6]	T	A	4.262e^-4	0.789	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1371510	2L_1371510_SNP [dm3] 2L_1371510_SNP [dm6]	T	C	4.263e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2777944	3L_2777944_SNP [dm3] 3L_2777944_SNP [dm6]	C	T	4.266e^-4	0.789	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13962394	3R_13962394_SNP [dm3] 3R_18136672_SNP [dm6]	A	C	4.271e^-4	0.789	INTERGENIC
X	13165198	X_13165198_INS [dm3] X_13271165_INS [dm6]	T	TAATTTAATTT...	4.279e^-4	0.789	INTRON HDAC4
2R	19018915	2R_19018915_DEL [dm3] 2R_23131392_DEL [dm6]	GTACAAGTATTTAAAGCTGT...	G	4.282e^-4	0.789	INTERGENIC
3R	2701957	3R_2701957_SNP [dm3] 3R_6876235_SNP [dm6]	C	T	4.283e^-4	0.789	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6655177	3L_6655177_SNP [dm3] 3L_6662077_SNP [dm6]	G	T	4.288e^-4	0.789	INTERGENIC
X	3773363	X_3773363_SNP [dm3] X_3879330_SNP [dm6]	A	T	4.289e^-4	0.789	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14721238	3R_14721238_SNP [dm3] 3R_18895516_SNP [dm6]	T	A	4.295e^-4	0.789	INTERGENIC
3R	8933880	3R_8933880_SNP [dm3] 3R_13108158_SNP [dm6]	C	T	4.297e^-4	0.789	INTRON timeout	TF binding site mE1_TFBS_inv
3R	16776316	3R_16776316_SNP [dm3] 3R_20950594_SNP [dm6]	C	A	4.298e^-4	0.789	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl
3R	6138530	3R_6138530_SNP [dm3] 3R_10312808_SNP [dm6]	C	T	4.302e^-4	0.789	NON_SYNONYMOUS_CODING Bruce
X	16230581	X_16230581_SNP [dm3] X_16336548_SNP [dm6]	C	A	4.303e^-4	0.789	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21958103	X_21958103_SNP [dm3] X_22556267_SNP [dm6]	A	C	4.306e^-4	0.789	INTERGENIC
3L	11756174	3L_11756174_SNP [dm3] 3L_11763074_SNP [dm6]	A	G	4.308e^-4	0.789	INTRON CG6024
3L	10712971	3L_10712971_SNP [dm3] 3L_10719871_SNP [dm6]	A	T	4.309e^-4	0.789	INTERGENIC
X	11005611	X_11005611_SNP [dm3] X_11111578_SNP [dm6]	A	C	4.314e^-4	0.789	NON_SYNONYMOUS_CODING Hsp60 DOWNSTREAM CG11122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15147453	2L_15147453_SNP [dm3] 2L_15147453_SNP [dm6]	C	A	4.320e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14110206	2L_14110206_SNP [dm3] 2L_14110206_SNP [dm6]	A	C	4.321e^-4	0.789	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	2802193	3L_2802193_SNP [dm3] 3L_2802193_SNP [dm6]	G	A	4.322e^-4	0.789	INTRON CG43444
2L	15507197	2L_15507197_SNP [dm3] 2L_15507197_SNP [dm6]	C	G	4.347e^-4	0.789	INTERGENIC
3L	9858701	3L_9858701_SNP [dm3] 3L_9865601_SNP [dm6]	A	C	4.350e^-4	0.789	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
3L	12900602	3L_12900602_SNP [dm3] 3L_12907502_SNP [dm6]	T	C	4.351e^-4	0.789	INTERGENIC
3L	15238263	3L_15238263_SNP [dm3] 3L_15245163_SNP [dm6]	A	G	4.354e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8146634	2L_8146634_SNP [dm3] 2L_8146634_SNP [dm6]	A	G	4.359e^-4	0.789	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19223221	3L_19223221_SNP [dm3] 3L_19230121_SNP [dm6]	C	A	4.361e^-4	0.789	DOWNSTREAM CR43893 INTRON fz2	TF binding site mE1_TFBS_Trl
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	4.362e^-4	0.789	INTERGENIC
2R	6087237	2R_6087237_SNP [dm3] 2R_10199732_SNP [dm6]	G	A	4.365e^-4	0.789	UPSTREAM CG34221 INTERGENIC
3L	2673135	3L_2673135_SNP [dm3] 3L_2673135_SNP [dm6]	G	C	4.368e^-4	0.789	SYNONYMOUS_CODING Fife
3L	11432885	3L_11432885_SNP [dm3] 3L_11439785_SNP [dm6]	C	T	4.370e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2278181	2L_2278181_SNP [dm3] 2L_2278181_SNP [dm6]	C	G	4.380e^-4	0.789	INTRON CR43753 EXON CR43753
X	16436376	X_16436376_SNP [dm3] X_16542343_SNP [dm6]	T	C	4.385e^-4	0.789	UTR_3_PRIME CG9902
3R	13626331	3R_13626331_SNP [dm3] 3R_17800609_SNP [dm6]	A	T	4.387e^-4	0.789	DOWNSTREAM CG17806 INTRON CG17803

By genomic position
Variant impact
Gene name

PC1_Nutri_Score_High phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results