DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.430e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1872 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	18163375	3R_18163375_SNP [dm3] 3R_22337653_SNP [dm6]	T	C	1.533e^-7	0.287	INTRON CG5388
3L	10893471	3L_10893471_SNP [dm3] 3L_10900371_SNP [dm6]	G	A	6.069e^-7	0.291	INTERGENIC
3L	10892043	3L_10892043_SNP [dm3] 3L_10898943_SNP [dm6]	G	A	7.754e^-7	0.291	UTR_5_PRIME Aps UPSTREAM Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10892323	3L_10892323_SNP [dm3] 3L_10899223_SNP [dm6]	C	T	7.754e^-7	0.291	UPSTREAM Aps INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10892370	3L_10892370_SNP [dm3] 3L_10899270_SNP [dm6]	A	T	7.754e^-7	0.291	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10890072	3L_10890072_SNP [dm3] 3L_10896972_SNP [dm6]	C	A	1.013e^-6	0.317	INTRON Aps
2L	17250475	2L_17250475_SNP [dm3] 2L_17250475_SNP [dm6]	T	C	1.449e^-6	0.388	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	10893186	3L_10893186_SNP [dm3] 3L_10900086_SNP [dm6]	C	G	1.993e^-6	0.463	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3L	10892347	3L_10892347_SNP [dm3] 3L_10899247_SNP [dm6]	T	A	2.226e^-6	0.463	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7232323	3L_7232323_SNP [dm3] 3L_7239223_SNP [dm6]	G	T	2.604e^-6	0.488	NON_SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	3373038	3R_3373038_SNP [dm3] 3R_7547316_SNP [dm6]	A	C	3.641e^-6	0.586	INTRON alpha-Est1	TF binding site mE1_TFBS_cad
3L	7233131	3L_7233131_SNP [dm3] 3L_7240031_SNP [dm6]	A	C	3.751e^-6	0.586	DOWNSTREAM RpL18 INTRON BHD	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10888831	3L_10888831_SNP [dm3] 3L_10895731_SNP [dm6]	C	T	4.918e^-6	0.709	UTR_3_PRIME Aps UPSTREAM CR45171
2L	14698866	2L_14698866_SNP [dm3] 2L_14698866_SNP [dm6]	T	C	6.886e^-6	0.895	INTERGENIC
2L	4313922	2L_4313922_SNP [dm3] 2L_4313922_SNP [dm6]	A	T	8.887e^-6	0.895	INTRON tutl
3R	19053367	3R_19053367_SNP [dm3] 3R_23227645_SNP [dm6]	G	T	8.966e^-6	0.895	UPSTREAM cnc DOWNSTREAM CG4467 INTERGENIC
2L	15779410	2L_15779410_SNP [dm3] 2L_15779410_SNP [dm6]	G	T	9.915e^-6	0.895	INTERGENIC
2L	4402131	2L_4402131_SNP [dm3] 2L_4402131_SNP [dm6]	A	T	1.022e^-5	0.895	SYNONYMOUS_CODING CG33003	TF binding site mE1_TFBS_cad
3L	10893148	3L_10893148_SNP [dm3] 3L_10900048_SNP [dm6]	G	A	1.036e^-5	0.895	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3R	9970520	3R_9970520_SNP [dm3] 3R_14144798_SNP [dm6]	A	T	1.041e^-5	0.895	INTERGENIC
2L	14459111	2L_14459111_SNP [dm3] 2L_14459111_SNP [dm6]	T	G	1.047e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	1043306	X_1043306_SNP [dm3] X_1149273_SNP [dm6]	G	A	1.087e^-5	0.895	INTERGENIC
2L	7153015	2L_7153015_SNP [dm3] 2L_7153015_SNP [dm6]	A	C	1.178e^-5	0.895	INTRON Pvf3
2R	10853979	2R_10853979_SNP [dm3] 2R_14966474_SNP [dm6]	A	G	1.192e^-5	0.895	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14416664	2L_14416664_SNP [dm3] 2L_14416664_SNP [dm6]	G	A	1.286e^-5	0.895	DOWNSTREAM Pburs INTERGENIC
3R	11124169	3R_11124169_SNP [dm3] 3R_15298447_SNP [dm6]	G	A	1.292e^-5	0.895	DOWNSTREAM Tm1 INTRON Tm1
3L	9566166	3L_9566166_SNP [dm3] 3L_9573066_SNP [dm6]	T	A	1.314e^-5	0.895	INTRON CG42673
3L	10890463	3L_10890463_SNP [dm3] 3L_10897363_SNP [dm6]	C	G	1.337e^-5	0.895	INTRON Aps
3R	18163547	3R_18163547_SNP [dm3] 3R_22337825_SNP [dm6]	A	G	1.445e^-5	0.899	INTRON CG5388
3L	10890417	3L_10890417_SNP [dm3] 3L_10897317_SNP [dm6]	C	G	1.447e^-5	0.899	INTRON Aps
3L	10890410	3L_10890410_SNP [dm3] 3L_10897310_SNP [dm6]	A	G	1.600e^-5	0.899	INTRON Aps
3L	891427	3L_891427_SNP [dm3] 3L_891427_SNP [dm6]	A	G	1.626e^-5	0.899	DOWNSTREAM snoRNA:CG32479-b INTRON CG32479 EXON snoRNA:CG32479-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12985683	3L_12985683_SNP [dm3] 3L_12992583_SNP [dm6]	A	G	1.632e^-5	0.899	INTERGENIC
2L	14459119	2L_14459119_SNP [dm3] 2L_14459119_SNP [dm6]	T	A	1.658e^-5	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10891447	3L_10891447_SNP [dm3] 3L_10898347_SNP [dm6]	C	T	1.701e^-5	0.899	UTR_5_PRIME Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7233047	3L_7233047_SNP [dm3] 3L_7239947_SNP [dm6]	G	A	1.727e^-5	0.899	SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1007898	X_1007898_SNP [dm3] X_1113865_SNP [dm6]	A	G	1.875e^-5	0.909	INTRON CG3655
3L	10885514	3L_10885514_SNP [dm3] 3L_10892414_SNP [dm6]	A	G	1.977e^-5	0.909	UTR_3_PRIME Cpr67Fa2
3L	7130471	3L_7130471_SNP [dm3] 3L_7137371_SNP [dm6]	G	A	2.046e^-5	0.909	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	24582240	3R_24582240_SNP [dm3] 3R_28756518_SNP [dm6]	T	A	2.183e^-5	0.909	NON_SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
2R	10717953	2R_10717953_SNP [dm3] 2R_14830448_SNP [dm6]	T	C	2.203e^-5	0.909	INTERGENIC
3R	22064050	3R_22064050_SNP [dm3] 3R_26238328_SNP [dm6]	A	G	2.214e^-5	0.909	INTRON CR42745
3L	12357958	3L_12357958_SNP [dm3] 3L_12364858_SNP [dm6]	T	G	2.236e^-5	0.909	INTERGENIC
2L	4313899	2L_4313899_SNP [dm3] 2L_4313899_SNP [dm6]	T	A	2.325e^-5	0.909	INTRON tutl
2R	16231363	2R_16231363_SNP [dm3] 2R_20343858_SNP [dm6]	A	T	2.399e^-5	0.909	UTR_5_PRIME CG13870	TF binding site mE1_TFBS_inv
2R	10853857	2R_10853857_SNP [dm3] 2R_14966352_SNP [dm6]	T	A	2.455e^-5	0.909	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17251487	2L_17251487_SNP [dm3] 2L_17251487_SNP [dm6]	A	C	2.492e^-5	0.909	INTRON beat-IIIc
2L	17251915	2L_17251915_SNP [dm3] 2L_17251915_SNP [dm6]	C	G	2.492e^-5	0.909	INTRON beat-IIIc
2L	17250811	2L_17250811_SNP [dm3] 2L_17250811_SNP [dm6]	C	A	2.531e^-5	0.909	INTRON beat-IIIc	TF binding site mE1_TFBS_run
2L	14575697	2L_14575697_SNP [dm3] 2L_14575697_SNP [dm6]	G	A	2.560e^-5	0.909	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10872518	3L_10872518_SNP [dm3] 3L_10879418_SNP [dm6]	A	T	2.655e^-5	0.909	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14416640	2L_14416640_SNP [dm3] 2L_14416640_SNP [dm6]	A	G	2.714e^-5	0.909	DOWNSTREAM Pburs INTERGENIC
3L	11043204	3L_11043204_SNP [dm3] 3L_11050104_SNP [dm6]	G	A	2.763e^-5	0.909	UPSTREAM CR45119 INTRON CG43693
2R	10853884	2R_10853884_SNP [dm3] 2R_14966379_SNP [dm6]	A	G	2.881e^-5	0.909	INTRON ckn	TF binding site mE1_TFBS_HSA
2L	14416677	2L_14416677_SNP [dm3] 2L_14416677_SNP [dm6]	C	T	2.984e^-5	0.909	DOWNSTREAM Pburs INTERGENIC
2R	18467306	2R_18467306_SNP [dm3] 2R_22579801_SNP [dm6]	A	T	3.042e^-5	0.909	INTRON dnr1
3R	18163548	3R_18163548_SNP [dm3] 3R_22337826_SNP [dm6]	A	C	3.063e^-5	0.909	INTRON CG5388
3L	658425	3L_658425_SNP [dm3] 3L_658425_SNP [dm6]	A	G	3.064e^-5	0.909	DOWNSTREAM Rev1 INTERGENIC
2L	17787810	2L_17787810_SNP [dm3] 2L_17787810_SNP [dm6]	T	G	3.100e^-5	0.909	UTR_3_PRIME CadN2
2L	4489447	2L_4489447_SNP [dm3] 2L_4489447_SNP [dm6]	C	A	3.138e^-5	0.909	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22064055	3R_22064055_SNP [dm3] 3R_26238333_SNP [dm6]	G	A	3.154e^-5	0.909	INTRON CR42745
3L	10895067	3L_10895067_SNP [dm3] 3L_10901967_SNP [dm6]	A	T	3.240e^-5	0.909	INTERGENIC
3L	10874204	3L_10874204_SNP [dm3] 3L_10881104_SNP [dm6]	C	T	3.292e^-5	0.909	SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14423078	2L_14423078_SNP [dm3] 2L_14423078_SNP [dm6]	A	T	3.322e^-5	0.909	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17251110	2L_17251110_SNP [dm3] 2L_17251110_SNP [dm6]	A	G	3.330e^-5	0.909	INTRON beat-IIIc
3L	8643588	3L_8643588_SNP [dm3] 3L_8650488_SNP [dm6]	A	C	3.346e^-5	0.909	INTRON Pex7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19892747	2R_19892747_INS [dm3] 2R_24005224_INS [dm6]	A	AAGG	3.515e^-5	0.909	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16973325	2L_16973325_SNP [dm3] 2L_16973325_SNP [dm6]	A	T	3.523e^-5	0.909	START_GAINED beat-IIIb UTR_5_PRIME beat-IIIb	TF binding site mE1_TFBS_Trl
2R	8785492	2R_8785492_SNP [dm3] 2R_12897987_SNP [dm6]	G	A	3.560e^-5	0.909	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	875928	3L_875928_SNP [dm3] 3L_875928_SNP [dm6]	G	T	3.567e^-5	0.909	INTRON CG32479	TF binding site mE1_TFBS_HSA
3R	25299195	3R_25299195_SNP [dm3] 3R_29473473_SNP [dm6]	C	T	3.604e^-5	0.909	INTRON Ptp99A
3L	9628731	3L_9628731_SNP [dm3] 3L_9635631_SNP [dm6]	C	G	3.750e^-5	0.909	INTRON fry
3R	13666443	3R_13666443_SNP [dm3] 3R_17840721_SNP [dm6]	T	C	3.760e^-5	0.909	INTRON tinc
3L	891421	3L_891421_SNP [dm3] 3L_891421_SNP [dm6]	T	A	3.782e^-5	0.909	DOWNSTREAM snoRNA:CG32479-b INTRON CG32479 EXON snoRNA:CG32479-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24275459	3R_24275459_SNP [dm3] 3R_28449737_SNP [dm6]	T	A	3.796e^-5	0.909	INTRON beat-VI
X	8510598	X_8510598_SNP [dm3] X_8616565_SNP [dm6]	T	A	3.835e^-5	0.909	INTERGENIC
3L	10970965	3L_10970965_SNP [dm3] 3L_10977865_SNP [dm6]	A	G	3.853e^-5	0.909	DOWNSTREAM CR45745 INTERGENIC
2R	4156946	2R_4156946_SNP [dm3] 2R_8269441_SNP [dm6]	G	C	3.919e^-5	0.909	UPSTREAM CG30371 INTERGENIC
2R	10853895	2R_10853895_SNP [dm3] 2R_14966390_SNP [dm6]	T	C	3.922e^-5	0.909	INTRON ckn	TF binding site mE1_TFBS_HSA
X	1043304	X_1043304_SNP [dm3] X_1149271_SNP [dm6]	T	A	4.061e^-5	0.909	INTERGENIC
3L	10890437	3L_10890437_SNP [dm3] 3L_10897337_SNP [dm6]	A	C	4.071e^-5	0.909	INTRON Aps
3L	10890455	3L_10890455_SNP [dm3] 3L_10897355_SNP [dm6]	A	C	4.071e^-5	0.909	INTRON Aps
2R	16231367	2R_16231367_SNP [dm3] 2R_20343862_SNP [dm6]	T	C	4.094e^-5	0.909	UTR_5_PRIME CG13870	TF binding site mE1_TFBS_inv
3L	18541711	3L_18541711_SNP [dm3] 3L_18548611_SNP [dm6]	G	A	4.132e^-5	0.909	INTERGENIC
3L	18498146	3L_18498146_SNP [dm3] 3L_18505046_SNP [dm6]	C	T	4.162e^-5	0.909	INTERGENIC
3L	18543458	3L_18543458_INS [dm3] 3L_18550358_INS [dm6]	C	CTGGGC	4.178e^-5	0.909	INTERGENIC
X	9485492	X_9485492_SNP [dm3] X_9591459_SNP [dm6]	C	G	4.352e^-5	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1043298	X_1043298_INS [dm3] X_1149265_INS [dm6]	A	AACACGTCGATCCTCGTCCT...	4.392e^-5	0.909	INTERGENIC
3L	13934700	3L_13934700_SNP [dm3] 3L_13941600_SNP [dm6]	G	A	4.603e^-5	0.909	INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	12251436	3R_12251436_DEL [dm3] 3R_16425714_DEL [dm6]	TT	T	4.661e^-5	0.909	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
X	1043294	X_1043294_SNP [dm3] X_1149261_SNP [dm6]	A	G	4.709e^-5	0.909	INTERGENIC
3L	7229359	3L_7229359_SNP [dm3] 3L_7236259_SNP [dm6]	T	C	4.726e^-5	0.909	DOWNSTREAM CG14826 & 1 other INTERGENIC
X	1007565	X_1007565_SNP [dm3] X_1113532_SNP [dm6]	G	T	4.764e^-5	0.909	INTRON CG3655
3R	5260745	3R_5260745_SNP [dm3] 3R_9435023_SNP [dm6]	T	G	4.768e^-5	0.909	INTRON ps	TF binding site mE1_TFBS_cad
3R	3464383	3R_3464383_SNP [dm3] 3R_7638661_SNP [dm6]	G	T	4.801e^-5	0.909	INTRON CG34127
2R	16231369	2R_16231369_SNP [dm3] 2R_20343864_SNP [dm6]	G	T	4.846e^-5	0.909	START_GAINED CG13870 UTR_5_PRIME CG13870	TF binding site mE1_TFBS_inv
3R	4959269	3R_4959269_SNP [dm3] 3R_9133547_SNP [dm6]	C	A	4.908e^-5	0.909	INTRON pum
2R	16231296	2R_16231296_SNP [dm3] 2R_20343791_SNP [dm6]	T	G	4.937e^-5	0.909	UPSTREAM CG13870 INTERGENIC
2L	21154147	2L_21154147_INS [dm3] 2L_21154147_INS [dm6]	A	ACAA	4.957e^-5	0.909	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	10853864	2R_10853864_SNP [dm3] 2R_14966359_SNP [dm6]	T	C	4.987e^-5	0.909	INTRON ckn	TF binding site mE1_TFBS_HSA
3L	890892	3L_890892_SNP [dm3] 3L_890892_SNP [dm6]	C	T	5.134e^-5	0.909	NON_SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19342732	2L_19342732_SNP [dm3] 2L_19342732_SNP [dm6]	G	T	5.182e^-5	0.909	INTRON dnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	17210592	2L_17210592_SNP [dm3] 2L_17210592_SNP [dm6]	C	G	5.232e^-5	0.909	INTRON beat-IIIc
2L	20048944	2L_20048944_SNP [dm3] 2L_20048944_SNP [dm6]	G	C	5.315e^-5	0.909	INTRON sNPF
2L	17297358	2L_17297358_SNP [dm3] 2L_17297358_SNP [dm6]	C	A	5.326e^-5	0.909	INTERGENIC
3L	1291183	3L_1291183_SNP [dm3] 3L_1291183_SNP [dm6]	T	C	5.330e^-5	0.909	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26091770	3R_26091770_SNP [dm3] 3R_30266048_SNP [dm6]	T	A	5.342e^-5	0.909	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19961483	2L_19961483_SNP [dm3] 2L_19961483_SNP [dm6]	G	T	5.413e^-5	0.909	NON_SYNONYMOUS_CODING CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
X	1043573	X_1043573_SNP [dm3] X_1149540_SNP [dm6]	T	C	5.476e^-5	0.909	INTERGENIC
3L	15478813	3L_15478813_INS [dm3] 3L_15485713_INS [dm6]	A	AGTATGCA	5.555e^-5	0.909	UPSTREAM Ran-like INTERGENIC
X	15617789	X_15617789_SNP [dm3] X_15723756_SNP [dm6]	T	C	5.575e^-5	0.909	SYNONYMOUS_CODING CG8184	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12195427	2R_12195427_SNP [dm3] 2R_16307922_SNP [dm6]	C	T	5.632e^-5	0.909	UTR_5_PRIME Nox
2L	14511668	2L_14511668_SNP [dm3] 2L_14511668_SNP [dm6]	C	T	5.668e^-5	0.909	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	3341694	3R_3341694_SNP [dm3] 3R_7515972_SNP [dm6]	G	A	5.732e^-5	0.909	UPSTREAM alpha-Est8 INTERGENIC
3L	11550458	3L_11550458_SNP [dm3] 3L_11557358_SNP [dm6]	C	G	5.733e^-5	0.909	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14069025	2L_14069025_SNP [dm3] 2L_14069025_SNP [dm6]	T	C	5.919e^-5	0.909	INTRON nAChRalpha5
3R	2027715	3R_2027715_SNP [dm3] 3R_6201993_SNP [dm6]	G	A	5.985e^-5	0.909	INTRON Osi24	TF binding site BDTNP1_TFBS_da
2L	13862740	2L_13862740_SNP [dm3] 2L_13862740_SNP [dm6]	A	T	6.009e^-5	0.909	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14580173	2L_14580173_SNP [dm3] 2L_14580173_SNP [dm6]	A	G	6.016e^-5	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10894323	3L_10894323_SNP [dm3] 3L_10901223_SNP [dm6]	G	A	6.229e^-5	0.909	INTERGENIC
3L	9628750	3L_9628750_SNP [dm3] 3L_9635650_SNP [dm6]	C	T	6.233e^-5	0.909	INTRON fry
2L	14580217	2L_14580217_SNP [dm3] 2L_14580217_SNP [dm6]	C	A	6.235e^-5	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10893139	3L_10893139_SNP [dm3] 3L_10900039_SNP [dm6]	T	C	6.333e^-5	0.909	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
X	9485477	X_9485477_SNP [dm3] X_9591444_SNP [dm6]	C	T	6.343e^-5	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18164617	3R_18164617_SNP [dm3] 3R_22338895_SNP [dm6]	A	T	6.380e^-5	0.909	INTRON CG5388	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23047433	3R_23047433_SNP [dm3] 3R_27221711_SNP [dm6]	G	A	6.410e^-5	0.909	INTERGENIC
2R	10853794	2R_10853794_SNP [dm3] 2R_14966289_SNP [dm6]	C	G	6.437e^-5	0.909	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25432504	3R_25432504_SNP [dm3] 3R_29606782_SNP [dm6]	G	C	6.515e^-5	0.909	INTRON alph
3R	9970590	3R_9970590_SNP [dm3] 3R_14144868_SNP [dm6]	T	C	6.612e^-5	0.909	INTERGENIC
3L	2463921	3L_2463921_SNP [dm3] 3L_2463921_SNP [dm6]	C	T	6.682e^-5	0.909	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4313778	2L_4313778_SNP [dm3] 2L_4313778_SNP [dm6]	G	A	6.767e^-5	0.909	INTRON tutl
3R	25432501	3R_25432501_SNP [dm3] 3R_29606779_SNP [dm6]	T	A	6.772e^-5	0.909	INTRON alph
2R	8785223	2R_8785223_SNP [dm3] 2R_12897718_SNP [dm6]	A	C	6.813e^-5	0.909	SPLICE_SITE_REGION vg INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8785183	2R_8785183_SNP [dm3] 2R_12897678_SNP [dm6]	A	T	6.880e^-5	0.909	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7396526	2L_7396526_SNP [dm3] 2L_7396526_SNP [dm6]	C	T	6.964e^-5	0.909	UPSTREAM CG5160 INTRON CG5160
X	1043378	X_1043378_SNP [dm3] X_1149345_SNP [dm6]	C	A	6.967e^-5	0.909	INTERGENIC
X	1007560	X_1007560_SNP [dm3] X_1113527_SNP [dm6]	C	T	7.116e^-5	0.909	INTRON CG3655
X	1007563	X_1007563_SNP [dm3] X_1113530_SNP [dm6]	T	G	7.116e^-5	0.909	INTRON CG3655
2L	2401680	2L_2401680_SNP [dm3] 2L_2401680_SNP [dm6]	C	A	7.197e^-5	0.909	INTRON VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13048708	2R_13048708_SNP [dm3] 2R_17161203_SNP [dm6]	T	C	7.245e^-5	0.909	UPSTREAM CG30457 INTERGENIC
2R	12819385	2R_12819385_SNP [dm3] 2R_16931880_SNP [dm6]	A	T	7.261e^-5	0.909	INTRON Pkc53E
X	12758961	X_12758961_SNP [dm3] X_12864928_SNP [dm6]	C	T	7.283e^-5	0.909	INTRON Pde9
2L	21150914	2L_21150914_SNP [dm3] 2L_21150914_SNP [dm6]	T	A	7.339e^-5	0.909	INTERGENIC
2L	4401326	2L_4401326_SNP [dm3] 2L_4401326_SNP [dm6]	T	G	7.354e^-5	0.909	DOWNSTREAM l_2_k05819 INTRON CG33003	TF binding site mE1_TFBS_cad
X	5262806	X_5262806_SNP [dm3] X_5368773_SNP [dm6]	A	T	7.600e^-5	0.909	INTRON SK
2L	9150494	2L_9150494_SNP [dm3] 2L_9150494_SNP [dm6]	A	G	7.639e^-5	0.909	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	516683	3L_516683_INS [dm3] 3L_516683_INS [dm6]	A	AA	7.644e^-5	0.909	INTRON klar
2L	15215592	2L_15215592_SNP [dm3] 2L_15215592_SNP [dm6]	T	C	7.765e^-5	0.909	INTRON CG43230
2L	14416643	2L_14416643_SNP [dm3] 2L_14416643_SNP [dm6]	G	C	7.778e^-5	0.909	DOWNSTREAM Pburs INTERGENIC
2R	10853796	2R_10853796_SNP [dm3] 2R_14966291_SNP [dm6]	C	G	7.908e^-5	0.909	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17188632	2L_17188632_SNP [dm3] 2L_17188632_SNP [dm6]	G	T	7.936e^-5	0.909	UTR_3_PRIME beat-IIIc
3L	10872329	3L_10872329_SNP [dm3] 3L_10879229_SNP [dm6]	C	T	7.940e^-5	0.909	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22236064	3R_22236064_SNP [dm3] 3R_26410342_SNP [dm6]	A	G	7.945e^-5	0.909	INTERGENIC
3L	13129659	3L_13129659_SNP [dm3] 3L_13136559_SNP [dm6]	C	T	7.977e^-5	0.909	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16419100	2L_16419100_SNP [dm3] 2L_16419100_SNP [dm6]	T	C	8.007e^-5	0.909	INTRON CG5888
2R	12819339	2R_12819339_DEL [dm3] 2R_16931834_DEL [dm6]	GACAGATAGAA...	T	8.059e^-5	0.909	INTRON Pkc53E
2L	16418996	2L_16418996_SNP [dm3] 2L_16418996_SNP [dm6]	A	G	8.161e^-5	0.909	INTRON CG5888
2L	14593964	2L_14593964_SNP [dm3] 2L_14593964_SNP [dm6]	A	T	8.173e^-5	0.909	INTERGENIC
2L	16419127	2L_16419127_SNP [dm3] 2L_16419127_SNP [dm6]	G	C	8.212e^-5	0.909	INTRON CG5888
3R	10038916	3R_10038916_SNP [dm3] 3R_14213194_SNP [dm6]	A	G	8.279e^-5	0.909	INTRON Dop1R1
3L	11597437	3L_11597437_SNP [dm3] 3L_11604337_SNP [dm6]	A	G	8.353e^-5	0.909	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16419120	2L_16419120_SNP [dm3] 2L_16419120_SNP [dm6]	T	C	8.394e^-5	0.909	INTRON CG5888
X	12677590	X_12677590_SNP [dm3] X_12783557_SNP [dm6]	T	C	8.431e^-5	0.909	UTR_5_PRIME CG32647
3L	13934701	3L_13934701_SNP [dm3] 3L_13941601_SNP [dm6]	A	T	8.477e^-5	0.909	INTRON CG32137	TF binding site mE1_TFBS_inv
X	9485552	X_9485552_SNP [dm3] X_9591519_SNP [dm6]	T	G	8.547e^-5	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7357627	2L_7357627_DEL [dm3] 2L_7357627_DEL [dm6]	TT	T	8.552e^-5	0.909	INTERGENIC
X	9230504	X_9230504_SNP [dm3] X_9336471_SNP [dm6]	G	A	8.646e^-5	0.909	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12195416	2R_12195416_SNP [dm3] 2R_16307911_SNP [dm6]	A	G	8.682e^-5	0.909	UTR_5_PRIME Nox
2L	620049	2L_620049_SNP [dm3] 2L_620049_SNP [dm6]	A	G	8.736e^-5	0.909	DOWNSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16896722	3L_16896722_SNP [dm3] 3L_16903622_SNP [dm6]	G	T	8.854e^-5	0.909	SYNONYMOUS_CODING Lmpt INTRON Lmpt
2R	12819384	2R_12819384_SNP [dm3] 2R_16931879_SNP [dm6]	A	G	8.881e^-5	0.909	INTRON Pkc53E
3L	16655301	3L_16655301_SNP [dm3] 3L_16662201_SNP [dm6]	A	G	8.882e^-5	0.909	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9166500	2R_9166500_INS [dm3] 2R_13278995_INS [dm6]	A	AA	8.925e^-5	0.909	INTRON Dh31-R
3L	14141053	3L_14141053_SNP [dm3] 3L_14147953_SNP [dm6]	T	A	8.986e^-5	0.909	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	10853843	2R_10853843_SNP [dm3] 2R_14966338_SNP [dm6]	C	T	9.048e^-5	0.909	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18539438	3L_18539438_SNP [dm3] 3L_18546338_SNP [dm6]	T	C	9.088e^-5	0.909	INTERGENIC
X	5637621	X_5637621_SNP [dm3] X_5743588_SNP [dm6]	T	C	9.091e^-5	0.909	SYNONYMOUS_CODING IntS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	18482521	3L_18482521_SNP [dm3] 3L_18489421_SNP [dm6]	T	G	9.151e^-5	0.909	INTRON AstC-R2
2L	10861682	2L_10861682_SNP [dm3] 2L_10861682_SNP [dm6]	T	G	9.161e^-5	0.909	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
3R	436508	3R_436508_SNP [dm3] 3R_4610786_SNP [dm6]	C	T	9.171e^-5	0.909	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16419129	2L_16419129_SNP [dm3] 2L_16419129_SNP [dm6]	T	C	9.405e^-5	0.909	INTRON CG5888
2L	14416680	2L_14416680_INS [dm3] 2L_14416680_INS [dm6]	T	TAGTT	9.491e^-5	0.909	DOWNSTREAM Pburs INTERGENIC
2L	17205039	2L_17205039_SNP [dm3] 2L_17205039_SNP [dm6]	G	T	9.511e^-5	0.909	INTRON beat-IIIc
3R	4876259	3R_4876259_SNP [dm3] 3R_9050537_SNP [dm6]	C	T	9.604e^-5	0.909	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13530880	2R_13530880_SNP [dm3] 2R_17643375_SNP [dm6]	T	C	9.700e^-5	0.909	INTERGENIC
3L	10355067	3L_10355067_SNP [dm3] 3L_10361967_SNP [dm6]	T	C	9.706e^-5	0.909	EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	18483478	3L_18483478_SNP [dm3] 3L_18490378_SNP [dm6]	T	A	9.722e^-5	0.909	INTRON AstC-R2
3L	10900426	3L_10900426_SNP [dm3] 3L_10907326_SNP [dm6]	T	A	9.749e^-5	0.909	INTERGENIC
2R	6715919	2R_6715919_SNP [dm3] 2R_10828414_SNP [dm6]	A	G	9.858e^-5	0.909	UTR_3_PRIME CG12344 DOWNSTREAM CG12325
3R	20225353	3R_20225353_SNP [dm3] 3R_24399631_SNP [dm6]	T	A	9.869e^-5	0.909	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_run
3L	18545968	3L_18545968_SNP [dm3] 3L_18552868_SNP [dm6]	G	C	9.884e^-5	0.909	INTERGENIC
X	5752889	X_5752889_SNP [dm3] X_5858856_SNP [dm6]	G	A	9.941e^-5	0.909	INTERGENIC
3L	19228825	3L_19228825_SNP [dm3] 3L_19235725_SNP [dm6]	T	A	1.003e^-4	0.909	UPSTREAM CG33647 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10853782	2R_10853782_SNP [dm3] 2R_14966277_SNP [dm6]	A	T	1.010e^-4	0.909	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17250654	2L_17250654_SNP [dm3] 2L_17250654_SNP [dm6]	T	A	1.017e^-4	0.909	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	4267756	2L_4267756_SNP [dm3] 2L_4267756_SNP [dm6]	C	T	1.027e^-4	0.909	INTERGENIC
3L	9628730	3L_9628730_SNP [dm3] 3L_9635630_SNP [dm6]	A	G	1.034e^-4	0.909	INTRON fry
2L	14416678	2L_14416678_SNP [dm3] 2L_14416678_SNP [dm6]	T	G	1.044e^-4	0.909	DOWNSTREAM Pburs INTERGENIC
3L	17768925	3L_17768925_SNP [dm3] 3L_17775825_SNP [dm6]	T	C	1.048e^-4	0.909	INTERGENIC
3L	13364545	3L_13364545_SNP [dm3] 3L_13371445_SNP [dm6]	A	C	1.055e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3326041	3R_3326041_SNP [dm3] 3R_7500319_SNP [dm6]	G	A	1.061e^-4	0.909	DOWNSTREAM CG1287 INTRON alpha-Est9
3R	3326042	3R_3326042_SNP [dm3] 3R_7500320_SNP [dm6]	A	G	1.061e^-4	0.909	DOWNSTREAM CG1287 INTRON alpha-Est9
2L	15141691	2L_15141691_SNP [dm3] 2L_15141691_SNP [dm6]	A	G	1.065e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20043326	2L_20043326_SNP [dm3] 2L_20043326_SNP [dm6]	T	C	1.072e^-4	0.909	INTRON sNPF
2L	6007078	2L_6007078_SNP [dm3] 2L_6007078_SNP [dm6]	C	T	1.076e^-4	0.909	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
2R	6055145	2R_6055145_SNP [dm3] 2R_10167640_SNP [dm6]	C	G	1.082e^-4	0.909	INTRON KCNQ
2L	13109836	2L_13109836_SNP [dm3] 2L_13109836_SNP [dm6]	C	G	1.088e^-4	0.909	DOWNSTREAM CG5142 INTERGENIC
3L	10872315	3L_10872315_SNP [dm3] 3L_10879215_SNP [dm6]	C	T	1.091e^-4	0.909	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5457459	2L_5457459_SNP [dm3] 2L_5457459_SNP [dm6]	A	T	1.093e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
2R	12819352	2R_12819352_SNP [dm3] 2R_16931847_SNP [dm6]	T	G	1.097e^-4	0.909	INTRON Pkc53E
2L	8811637	2L_8811637_SNP [dm3] 2L_8811637_SNP [dm6]	T	G	1.098e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2496522	X_2496522_SNP [dm3] X_2602489_SNP [dm6]	T	A	1.103e^-4	0.909	SYNONYMOUS_CODING Klp3A	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	17768902	3L_17768902_SNP [dm3] 3L_17775802_SNP [dm6]	A	C	1.107e^-4	0.909	INTERGENIC
X	9485643	X_9485643_SNP [dm3] X_9591610_SNP [dm6]	T	A	1.110e^-4	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25042831	3R_25042831_SNP [dm3] 3R_29217109_SNP [dm6]	G	A	1.111e^-4	0.909	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
3L	10493134	3L_10493134_SNP [dm3] 3L_10500034_SNP [dm6]	C	A	1.126e^-4	0.909	INTRON A2bp1
2L	8889118	2L_8889118_SNP [dm3] 2L_8889118_SNP [dm6]	A	G	1.129e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2R	10853861	2R_10853861_SNP [dm3] 2R_14966356_SNP [dm6]	G	T	1.132e^-4	0.909	INTRON ckn	TF binding site mE1_TFBS_HSA
X	9485557	X_9485557_SNP [dm3] X_9591524_SNP [dm6]	G	A	1.147e^-4	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3474013	3R_3474013_DEL [dm3] 3R_7648291_DEL [dm6]	TCC	T	1.152e^-4	0.909	INTERGENIC
3R	4959268	3R_4959268_SNP [dm3] 3R_9133546_SNP [dm6]	G	A	1.162e^-4	0.909	INTRON pum
2R	7324085	2R_7324085_SNP [dm3] 2R_11436580_SNP [dm6]	A	T	1.163e^-4	0.909	INTRON CG7777
2L	2072331	2L_2072331_SNP [dm3] 2L_2072331_SNP [dm6]	T	C	1.174e^-4	0.909	INTRON dpr3
2L	2401837	2L_2401837_SNP [dm3] 2L_2401837_SNP [dm6]	C	T	1.174e^-4	0.909	INTRON VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16896950	3L_16896950_SNP [dm3] 3L_16903850_SNP [dm6]	G	A	1.177e^-4	0.909	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	9629165	3L_9629165_SNP [dm3] 3L_9636065_SNP [dm6]	G	C	1.178e^-4	0.909	SYNONYMOUS_CODING fry
3L	18494593	3L_18494593_SNP [dm3] 3L_18501493_SNP [dm6]	C	T	1.184e^-4	0.909	INTRON AstC-R2
3L	9628703	3L_9628703_SNP [dm3] 3L_9635603_SNP [dm6]	C	T	1.201e^-4	0.909	INTRON fry
3L	14212408	3L_14212408_SNP [dm3] 3L_14219308_SNP [dm6]	G	A	1.203e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
2L	14638904	2L_14638904_SNP [dm3] 2L_14638904_SNP [dm6]	T	C	1.204e^-4	0.909	INTRON osp
X	12169095	X_12169095_SNP [dm3] X_12275062_SNP [dm6]	G	T	1.208e^-4	0.909	SYNONYMOUS_CODING CG45603 INTRON Ten-a
X	6165181	X_6165181_SNP [dm3] X_6271148_SNP [dm6]	C	T	1.219e^-4	0.909	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14212532	3L_14212532_SNP [dm3] 3L_14219432_SNP [dm6]	T	C	1.226e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16873306	3L_16873306_SNP [dm3] 3L_16880206_SNP [dm6]	A	T	1.227e^-4	0.909	DOWNSTREAM CG32170 INTRON Lmpt
2L	14417496	2L_14417496_SNP [dm3] 2L_14417496_SNP [dm6]	A	C	1.233e^-4	0.909	UPSTREAM Pburs INTERGENIC
2R	16235122	2R_16235122_INS [dm3] 2R_20347617_INS [dm6]	A	AA	1.236e^-4	0.909	DOWNSTREAM CG16741 INTERGENIC
2R	7324009	2R_7324009_SNP [dm3] 2R_11436504_SNP [dm6]	A	C	1.240e^-4	0.909	INTRON CG7777
2L	3141080	2L_3141080_SNP [dm3] 2L_3141080_SNP [dm6]	T	A	1.242e^-4	0.909	INTRON toc
2L	2758369	2L_2758369_SNP [dm3] 2L_2758369_SNP [dm6]	A	C	1.243e^-4	0.909	UPSTREAM CR44772 DOWNSTREAM Snapin & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7233112	3L_7233112_SNP [dm3] 3L_7240012_SNP [dm6]	C	T	1.252e^-4	0.909	DOWNSTREAM RpL18 INTRON BHD	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9632157	3L_9632157_SNP [dm3] 3L_9639057_SNP [dm6]	G	T	1.252e^-4	0.909	UPSTREAM CG18179 DOWNSTREAM CG8329 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14416675	2L_14416675_SNP [dm3] 2L_14416675_SNP [dm6]	G	T	1.255e^-4	0.909	DOWNSTREAM Pburs INTERGENIC
X	5142481	X_5142481_SNP [dm3] X_5248448_SNP [dm6]	A	G	1.256e^-4	0.909	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14212407	3L_14212407_SNP [dm3] 3L_14219307_SNP [dm6]	T	C	1.268e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
3L	17145234	3L_17145234_SNP [dm3] 3L_17152134_SNP [dm6]	C	T	1.274e^-4	0.909	INTRON Rbp6
3R	21790656	3R_21790656_SNP [dm3] 3R_25964934_SNP [dm6]	T	A	1.279e^-4	0.909	INTRON boss	TF binding site mE1_TFBS_inv
X	17817931	X_17817931_SNP [dm3] X_17923898_SNP [dm6]	G	T	1.289e^-4	0.909	UTR_3_PRIME CG6847 DOWNSTREAM Sh
2R	11066017	2R_11066017_SNP [dm3] 2R_15178512_SNP [dm6]	A	G	1.293e^-4	0.909	INTRON igl
2R	18165436	2R_18165436_SNP [dm3] 2R_22277931_SNP [dm6]	G	A	1.298e^-4	0.909	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14212583	3L_14212583_INS [dm3] 3L_14219483_INS [dm6]	A	ACATA	1.299e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12094720	2L_12094720_SNP [dm3] 2L_12094720_SNP [dm6]	G	T	1.299e^-4	0.909	DOWNSTREAM CG6712 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	3402835	2L_3402835_SNP [dm3] 2L_3402835_SNP [dm6]	A	G	1.302e^-4	0.909	INTERGENIC
2L	14405442	2L_14405442_SNP [dm3] 2L_14405442_SNP [dm6]	T	C	1.310e^-4	0.909	INTRON elB	TF binding site mE1_TFBS_cad
3L	20541481	3L_20541481_SNP [dm3] 3L_20548381_SNP [dm6]	A	G	1.311e^-4	0.909	INTERGENIC
3L	19359809	3L_19359809_SNP [dm3] 3L_19366709_SNP [dm6]	G	A	1.313e^-4	0.909	INTRON CG32206
3L	915009	3L_915009_INS [dm3] 3L_915009_INS [dm6]	T	TTGGTTTGTGT...	1.319e^-4	0.909	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6077571	2R_6077571_SNP [dm3] 2R_10190066_SNP [dm6]	T	C	1.323e^-4	0.909	INTRON KCNQ
2L	14037657	2L_14037657_SNP [dm3] 2L_14037657_SNP [dm6]	T	A	1.326e^-4	0.909	EXON CR45284
2L	2758392	2L_2758392_SNP [dm3] 2L_2758392_SNP [dm6]	T	C	1.330e^-4	0.909	UPSTREAM CR44772 DOWNSTREAM Snapin & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	9485582	X_9485582_SNP [dm3] X_9591549_SNP [dm6]	C	T	1.340e^-4	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18539295	3L_18539295_SNP [dm3] 3L_18546195_SNP [dm6]	T	G	1.343e^-4	0.909	INTERGENIC
X	20836457	X_20836457_SNP [dm3] X_20965430_SNP [dm6]	G	T	1.347e^-4	0.909	UPSTREAM CG1304 INTERGENIC
2L	8805439	2L_8805439_SNP [dm3] 2L_8805439_SNP [dm6]	A	T	1.353e^-4	0.909	INTERGENIC
3L	18539367	3L_18539367_SNP [dm3] 3L_18546267_SNP [dm6]	C	T	1.354e^-4	0.909	INTERGENIC
3L	18539376	3L_18539376_MNP [dm3] 3L_18546276_MNP [dm6]	GTC	AAA	1.354e^-4	0.909	INTERGENIC
3L	18539381	3L_18539381_INS [dm3] 3L_18546281_INS [dm6]	T	TAT	1.354e^-4	0.909	INTERGENIC
3L	18539390	3L_18539390_INS [dm3] 3L_18546290_INS [dm6]	A	ATC	1.354e^-4	0.909	INTERGENIC
3L	18539392	3L_18539392_MNP [dm3] 3L_18546292_MNP [dm6]	TTC	AGT	1.354e^-4	0.909	INTERGENIC
3L	17954007	3L_17954007_SNP [dm3] 3L_17960907_SNP [dm6]	C	T	1.354e^-4	0.909	INTRON Eip75B
3L	10872377	3L_10872377_SNP [dm3] 3L_10879277_SNP [dm6]	G	A	1.355e^-4	0.909	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14582803	2L_14582803_SNP [dm3] 2L_14582803_SNP [dm6]	G	A	1.357e^-4	0.909	INTERGENIC
2L	13862744	2L_13862744_SNP [dm3] 2L_13862744_SNP [dm6]	G	T	1.362e^-4	0.909	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14212402	3L_14212402_SNP [dm3] 3L_14219302_SNP [dm6]	A	C	1.379e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
2R	18435134	2R_18435134_SNP [dm3] 2R_22547629_SNP [dm6]	C	G	1.380e^-4	0.909	INTRON px
2R	20232637	2R_20232637_SNP [dm3] 2R_24345114_SNP [dm6]	T	C	1.381e^-4	0.909	INTRON bs	TF binding site mE1_TFBS_chinmo
3L	20255734	3L_20255734_SNP [dm3] 3L_20262634_SNP [dm6]	C	T	1.384e^-4	0.909	INTRON rdgC
X	9485505	X_9485505_SNP [dm3] X_9591472_SNP [dm6]	A	T	1.384e^-4	0.909	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27145413	3R_27145413_SNP [dm3] 3R_31319691_SNP [dm6]	A	C	1.384e^-4	0.909	INTRON CG34347
2L	17250674	2L_17250674_SNP [dm3] 2L_17250674_SNP [dm6]	C	A	1.392e^-4	0.909	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	12084316	2R_12084316_SNP [dm3] 2R_16196811_SNP [dm6]	T	C	1.395e^-4	0.909	UTR_3_PRIME CG44242 UPSTREAM CG42837 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	18640053	2L_18640053_SNP [dm3] 2L_18640053_SNP [dm6]	C	T	1.397e^-4	0.909	INTRON MESR3
3R	23047370	3R_23047370_SNP [dm3] 3R_27221648_SNP [dm6]	A	C	1.418e^-4	0.909	INTERGENIC
2L	7400979	2L_7400979_SNP [dm3] 2L_7400979_SNP [dm6]	A	C	1.428e^-4	0.909	UPSTREAM CG5171 INTERGENIC
2R	12892012	2R_12892012_SNP [dm3] 2R_17004507_SNP [dm6]	T	C	1.431e^-4	0.909	SYNONYMOUS_CODING NiPp1 UPSTREAM CG6805 DOWNSTREAM CG6796	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	24100312	3R_24100312_SNP [dm3] 3R_28274590_SNP [dm6]	T	C	1.434e^-4	0.909	INTERGENIC
2L	12155016	2L_12155016_SNP [dm3] 2L_12155016_SNP [dm6]	A	T	1.434e^-4	0.909	INTRON CG31760
X	9230683	X_9230683_SNP [dm3] X_9336650_SNP [dm6]	G	T	1.436e^-4	0.909	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19345815	3L_19345815_SNP [dm3] 3L_19352715_SNP [dm6]	C	T	1.439e^-4	0.909	INTRON CG32206
2L	19827685	2L_19827685_SNP [dm3] 2L_19827685_SNP [dm6]	T	G	1.442e^-4	0.909	NON_SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18539388	3L_18539388_SNP [dm3] 3L_18546288_SNP [dm6]	A	C	1.444e^-4	0.909	INTERGENIC
3L	11451929	3L_11451929_SNP [dm3] 3L_11458829_SNP [dm6]	T	C	1.444e^-4	0.909	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289
X	1211836	X_1211836_SNP [dm3] X_1317803_SNP [dm6]	A	G	1.448e^-4	0.909	INTRON DAAM	TF binding site BDTNP1_TFBS_twi
2L	7400976	2L_7400976_SNP [dm3] 2L_7400976_SNP [dm6]	T	C	1.454e^-4	0.909	UPSTREAM CG5171 INTERGENIC
2R	3501197	2R_3501197_INS [dm3] 2R_7613692_INS [dm6]	G	GTTTTTTAGGAGCTAGAAAA...	1.455e^-4	0.909	UTR_5_PRIME CG1358 INTRON CG1358	TF binding site BDTNP1_TFBS_twi
3L	18539406	3L_18539406_SNP [dm3] 3L_18546306_SNP [dm6]	A	T	1.470e^-4	0.909	INTERGENIC
3L	7229809	3L_7229809_DEL [dm3] 3L_7236709_DEL [dm6]	ACATACTATCGAAGTAGACA...	A	1.477e^-4	0.909	DOWNSTREAM CG14829 & 1 other INTERGENIC
X	10942380	X_10942380_SNP [dm3] X_11048347_SNP [dm6]	A	C	1.478e^-4	0.909	INTRON CG11160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26501843	3R_26501843_DEL [dm3] 3R_30676121_DEL [dm6]	GG	G	1.491e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10789767	3R_10789767_SNP [dm3] 3R_14964045_SNP [dm6]	A	T	1.517e^-4	0.909	INTERGENIC
3L	11550040	3L_11550040_SNP [dm3] 3L_11556940_SNP [dm6]	T	A	1.519e^-4	0.909	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13169308	3L_13169308_SNP [dm3] 3L_13176208_SNP [dm6]	T	C	1.523e^-4	0.909	SYNONYMOUS_CODING snky
2L	4850957	2L_4850957_SNP [dm3] 2L_4850957_SNP [dm6]	G	A	1.529e^-4	0.909	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2	TF binding site mE1_TFBS_sens
2L	14416631	2L_14416631_INS [dm3] 2L_14416631_INS [dm6]	A	ACTATATGAGAA...	1.532e^-4	0.909	DOWNSTREAM Pburs INTERGENIC
2R	16085469	2R_16085469_SNP [dm3] 2R_20197964_SNP [dm6]	G	C	1.536e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_cad
X	7501701	X_7501701_SNP [dm3] X_7607668_SNP [dm6]	C	A	1.537e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18539368	3L_18539368_SNP [dm3] 3L_18546268_SNP [dm6]	C	A	1.544e^-4	0.909	INTERGENIC
2L	1188079	2L_1188079_SNP [dm3] 2L_1188079_SNP [dm6]	G	T	1.546e^-4	0.909	INTRON CG5001	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7229900	3L_7229900_DEL [dm3] 3L_7236800_DEL [dm6]	CTAGGG	C	1.546e^-4	0.909	UTR_3_PRIME CG14829 DOWNSTREAM CG14826
2L	14198005	2L_14198005_SNP [dm3] 2L_14198005_SNP [dm6]	C	A	1.554e^-4	0.909	UPSTREAM Dyrk2 INTRON Dyrk2
2L	7719985	2L_7719985_SNP [dm3] 2L_7719985_SNP [dm6]	T	A	1.561e^-4	0.909	NON_SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
2R	12195465	2R_12195465_SNP [dm3] 2R_16307960_SNP [dm6]	C	T	1.563e^-4	0.909	UTR_5_PRIME Nox UPSTREAM Nox
3R	19036033	3R_19036033_SNP [dm3] 3R_23210311_SNP [dm6]	A	T	1.564e^-4	0.909	INTRON cnc
3L	10493735	3L_10493735_SNP [dm3] 3L_10500635_SNP [dm6]	C	G	1.568e^-4	0.909	INTRON A2bp1
3L	14212535	3L_14212535_SNP [dm3] 3L_14219435_SNP [dm6]	C	T	1.577e^-4	0.909	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7875791	3R_7875791_DEL [dm3] 3R_12050069_DEL [dm6]	TT	T	1.578e^-4	0.909	UPSTREAM CG14739 INTERGENIC
3L	1321520	3L_1321520_SNP [dm3] 3L_1321520_SNP [dm6]	A	C	1.578e^-4	0.909	DOWNSTREAM CG9184 INTRON Myo61F
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	1.579e^-4	0.909	INTRON CG32982
2R	9550769	2R_9550769_SNP [dm3] 2R_13663264_SNP [dm6]	A	T	1.588e^-4	0.909	NON_SYNONYMOUS_CODING CG6209 INTRON fas
2R	16231302	2R_16231302_SNP [dm3] 2R_20343797_SNP [dm6]	G	T	1.590e^-4	0.909	UPSTREAM CG13870 INTERGENIC
X	9486721	X_9486721_SNP [dm3] X_9592688_SNP [dm6]	C	A	1.595e^-4	0.909	INTERGENIC
3L	17954003	3L_17954003_SNP [dm3] 3L_17960903_SNP [dm6]	T	C	1.601e^-4	0.909	INTRON Eip75B
2L	14580182	2L_14580182_SNP [dm3] 2L_14580182_SNP [dm6]	T	G	1.601e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10872437	3L_10872437_SNP [dm3] 3L_10879337_SNP [dm6]	G	T	1.604e^-4	0.909	UPSTREAM CG6418 INTRON Blos4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18543384	3L_18543384_SNP [dm3] 3L_18550284_SNP [dm6]	T	A	1.605e^-4	0.909	INTERGENIC
2L	7697158	2L_7697158_SNP [dm3] 2L_7697158_SNP [dm6]	C	A	1.619e^-4	0.909	SPLICE_SITE_ACCEPTOR Tep2 INTRON Tep2
3R	3348609	3R_3348609_SNP [dm3] 3R_7522887_SNP [dm6]	T	C	1.620e^-4	0.909	INTRON alpha-Est7
2R	9959043	2R_9959043_SNP [dm3] 2R_14071538_SNP [dm6]	A	G	1.624e^-4	0.909	INTRON Prosap
X	1043480	X_1043480_SNP [dm3] X_1149447_SNP [dm6]	A	C	1.630e^-4	0.909	INTERGENIC
3L	9628687	3L_9628687_SNP [dm3] 3L_9635587_SNP [dm6]	C	A	1.632e^-4	0.909	INTRON fry
3L	9628694	3L_9628694_MNP [dm3] 3L_9635594_MNP [dm6]	TAG	AGA	1.632e^-4	0.909	INTRON fry
3L	9628700	3L_9628700_INS [dm3] 3L_9635600_INS [dm6]	G	GTTTA	1.632e^-4	0.909	INTRON fry
X	11859630	X_11859630_INS [dm3] X_11965597_INS [dm6]	A	ATCTATGGGTCG...	1.652e^-4	0.909	INTRON cac
2L	21150944	2L_21150944_SNP [dm3] 2L_21150944_SNP [dm6]	T	C	1.654e^-4	0.909	INTERGENIC	transposable element FlyBase
3L	18539428	3L_18539428_SNP [dm3] 3L_18546328_SNP [dm6]	C	T	1.654e^-4	0.909	INTERGENIC
3R	1120877	3R_1120877_SNP [dm3] 3R_5295155_SNP [dm6]	T	A	1.655e^-4	0.909	INTRON mtd	TF binding site mE1_TFBS_inv
3L	8606691	3L_8606691_SNP [dm3] 3L_8613591_SNP [dm6]	A	G	1.659e^-4	0.909	INTRON CG6282
3L	18539290	3L_18539290_SNP [dm3] 3L_18546190_SNP [dm6]	A	G	1.661e^-4	0.909	INTERGENIC
3R	9824544	3R_9824544_SNP [dm3] 3R_13998822_SNP [dm6]	C	T	1.665e^-4	0.909	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18964568	2R_18964568_SNP [dm3] 2R_23077045_SNP [dm6]	G	A	1.666e^-4	0.909	DOWNSTREAM CG3085 INTRON Art7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10901966	3L_10901966_SNP [dm3] 3L_10908866_SNP [dm6]	G	T	1.675e^-4	0.909	INTERGENIC
3L	10901969	3L_10901969_SNP [dm3] 3L_10908869_SNP [dm6]	C	T	1.675e^-4	0.909	INTERGENIC
3L	7229772	3L_7229772_DEL [dm3] 3L_7236672_DEL [dm6]	ATATTTTTATGTGATAGGAA...	A	1.676e^-4	0.909	DOWNSTREAM CG14829 & 1 other INTERGENIC
3L	21627997	3L_21627997_SNP [dm3] 3L_21634897_SNP [dm6]	A	C	1.680e^-4	0.909	UPSTREAM ORMDL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10872444	3L_10872444_SNP [dm3] 3L_10879344_SNP [dm6]	C	T	1.685e^-4	0.909	UPSTREAM CG6418 INTRON Blos4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18539385	3L_18539385_SNP [dm3] 3L_18546285_SNP [dm6]	A	C	1.685e^-4	0.909	INTERGENIC
2L	14580180	2L_14580180_SNP [dm3] 2L_14580180_SNP [dm6]	A	T	1.694e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10872476	3L_10872476_SNP [dm3] 3L_10879376_SNP [dm6]	G	C	1.696e^-4	0.909	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2457522	3L_2457522_SNP [dm3] 3L_2457522_SNP [dm6]	A	T	1.699e^-4	0.909	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11931018	2R_11931018_SNP [dm3] 2R_16043513_SNP [dm6]	C	T	1.702e^-4	0.909	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18539383	3L_18539383_SNP [dm3] 3L_18546283_SNP [dm6]	A	T	1.702e^-4	0.909	INTERGENIC
3L	18539387	3L_18539387_SNP [dm3] 3L_18546287_SNP [dm6]	A	T	1.702e^-4	0.909	INTERGENIC
2L	14423141	2L_14423141_SNP [dm3] 2L_14423141_SNP [dm6]	T	C	1.712e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16419122	2L_16419122_SNP [dm3] 2L_16419122_SNP [dm6]	C	T	1.715e^-4	0.91	INTRON CG5888
2R	8785172	2R_8785172_SNP [dm3] 2R_12897667_SNP [dm6]	T	G	1.727e^-4	0.91	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9628657	3L_9628657_SNP [dm3] 3L_9635557_SNP [dm6]	C	A	1.728e^-4	0.91	INTRON fry
2L	2122016	2L_2122016_SNP [dm3] 2L_2122016_SNP [dm6]	T	C	1.729e^-4	0.91	INTERGENIC
3R	13871012	3R_13871012_SNP [dm3] 3R_18045290_SNP [dm6]	G	A	1.741e^-4	0.912	UTR_3_PRIME htl
3L	18539257	3L_18539257_SNP [dm3] 3L_18546157_SNP [dm6]	T	A	1.756e^-4	0.912	INTERGENIC
3L	3346076	3L_3346076_DEL [dm3] 3L_3346076_DEL [dm6]	AA	A	1.759e^-4	0.912	INTRON kst
2L	14197080	2L_14197080_SNP [dm3] 2L_14197080_SNP [dm6]	C	T	1.760e^-4	0.912	NON_SYNONYMOUS_CODING Dyrk2
3R	23047415	3R_23047415_DEL [dm3] 3R_27221693_DEL [dm6]	GG	G	1.768e^-4	0.912	INTERGENIC
3L	10505163	3L_10505163_SNP [dm3] 3L_10512063_SNP [dm6]	A	C	1.783e^-4	0.912	INTRON A2bp1
3L	18539371	3L_18539371_SNP [dm3] 3L_18546271_SNP [dm6]	C	T	1.786e^-4	0.912	INTERGENIC
3L	19265019	3L_19265019_SNP [dm3] 3L_19271919_SNP [dm6]	T	G	1.789e^-4	0.912	SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8785193	2R_8785193_SNP [dm3] 2R_12897688_SNP [dm6]	G	C	1.790e^-4	0.912	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18093751	3L_18093751_SNP [dm3] 3L_18100651_SNP [dm6]	G	C	1.790e^-4	0.912	INTRON CG13698
3L	5227108	3L_5227108_SNP [dm3] 3L_5234008_SNP [dm6]	C	T	1.797e^-4	0.912	UPSTREAM CG4669 INTRON shep
2L	14106338	2L_14106338_SNP [dm3] 2L_14106338_SNP [dm6]	C	T	1.800e^-4	0.912	NON_SYNONYMOUS_CODING CG16879
3R	22236059	3R_22236059_SNP [dm3] 3R_26410337_SNP [dm6]	T	A	1.803e^-4	0.912	INTERGENIC
3L	18542735	3L_18542735_SNP [dm3] 3L_18549635_SNP [dm6]	T	A	1.811e^-4	0.912	INTERGENIC
2R	19179339	2R_19179339_SNP [dm3] 2R_23291816_SNP [dm6]	A	T	1.815e^-4	0.912	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18539260	3L_18539260_SNP [dm3] 3L_18546160_SNP [dm6]	G	A	1.816e^-4	0.912	INTERGENIC
2L	17297269	2L_17297269_DEL [dm3] 2L_17297269_DEL [dm6]	AA	A	1.821e^-4	0.912	INTERGENIC
2L	7400965	2L_7400965_SNP [dm3] 2L_7400965_SNP [dm6]	T	G	1.826e^-4	0.912	UPSTREAM CG5171 INTERGENIC
3L	19639401	3L_19639401_INS [dm3] 3L_19646301_INS [dm6]	G	ATTCTC	1.846e^-4	0.912	DOWNSTREAM Oat INTERGENIC
3L	7229463	3L_7229463_SNP [dm3] 3L_7236363_SNP [dm6]	A	C	1.846e^-4	0.912	DOWNSTREAM CG14826 & 1 other INTERGENIC
2L	14059493	2L_14059493_SNP [dm3] 2L_14059493_SNP [dm6]	A	G	1.853e^-4	0.912	INTRON nAChRalpha5
2L	14199528	2L_14199528_SNP [dm3] 2L_14199528_SNP [dm6]	C	T	1.855e^-4	0.912	INTRON Dyrk2
2L	14199861	2L_14199861_SNP [dm3] 2L_14199861_SNP [dm6]	C	T	1.855e^-4	0.912	INTRON Dyrk2
2L	14199871	2L_14199871_SNP [dm3] 2L_14199871_SNP [dm6]	C	T	1.855e^-4	0.912	INTRON Dyrk2
X	9813468	X_9813468_SNP [dm3] X_9919435_SNP [dm6]	A	G	1.861e^-4	0.912	INTERGENIC
2R	12195436	2R_12195436_SNP [dm3] 2R_16307931_SNP [dm6]	A	C	1.878e^-4	0.912	UTR_5_PRIME Nox
3L	6171024	3L_6171024_SNP [dm3] 3L_6177924_SNP [dm6]	C	T	1.878e^-4	0.912	SPLICE_SITE_REGION CG7376 DOWNSTREAM CG10274 INTRON CG7376
2L	14415728	2L_14415728_SNP [dm3] 2L_14415728_SNP [dm6]	A	C	1.881e^-4	0.912	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18539348	3L_18539348_SNP [dm3] 3L_18546248_SNP [dm6]	G	A	1.885e^-4	0.912	INTERGENIC
2L	19850385	2L_19850385_SNP [dm3] 2L_19850385_SNP [dm6]	G	T	1.887e^-4	0.912	UTR_5_PRIME sick INTRON sick
2L	20481872	2L_20481872_DEL [dm3] 2L_20481872_DEL [dm6]	CCTATAAAC	C	1.887e^-4	0.912	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14901067	3R_14901067_SNP [dm3] 3R_19075345_SNP [dm6]	A	G	1.888e^-4	0.912	INTRON cdi
3R	16181433	3R_16181433_SNP [dm3] 3R_20355711_SNP [dm6]	C	T	1.899e^-4	0.914	INTERGENIC
3L	10872479	3L_10872479_SNP [dm3] 3L_10879379_SNP [dm6]	A	G	1.904e^-4	0.914	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9147884	2R_9147884_SNP [dm3] 2R_13260379_SNP [dm6]	A	C	1.912e^-4	0.914	UTR_5_PRIME CG42319
2L	15638319	2L_15638319_SNP [dm3] 2L_15638319_SNP [dm6]	C	T	1.915e^-4	0.914	INTERGENIC
3L	7229891	3L_7229891_DEL [dm3] 3L_7236791_DEL [dm6]	TTAGTT	A	1.916e^-4	0.914	DOWNSTREAM CG14829 & 1 other INTERGENIC
3R	19771409	3R_19771409_SNP [dm3] 3R_23945687_SNP [dm6]	G	A	1.930e^-4	0.918	INTRON CG12268	TF binding site mE1_TFBS_cad
2L	4313591	2L_4313591_SNP [dm3] 2L_4313591_SNP [dm6]	G	A	1.939e^-4	0.918	INTRON tutl
3L	18503832	3L_18503832_SNP [dm3] 3L_18510732_SNP [dm6]	A	T	1.953e^-4	0.918	INTERGENIC
3R	14901069	3R_14901069_SNP [dm3] 3R_19075347_SNP [dm6]	A	G	1.967e^-4	0.918	INTRON cdi
3L	14131806	3L_14131806_SNP [dm3] 3L_14138706_SNP [dm6]	T	C	1.968e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2R	2142668	2R_2142668_SNP [dm3] 2R_6255163_SNP [dm6]	T	C	1.970e^-4	0.918	UTR_3_PRIME Pld	transposable element FlyBase
2L	6592835	2L_6592835_SNP [dm3] 2L_6592835_SNP [dm6]	G	A	1.973e^-4	0.918	INTRON CG11319
2R	2142304	2R_2142304_SNP [dm3] 2R_6254799_SNP [dm6]	A	G	1.981e^-4	0.918	INTRON Pld	transposable element FlyBase
3R	24100311	3R_24100311_SNP [dm3] 3R_28274589_SNP [dm6]	T	A	1.982e^-4	0.918	INTERGENIC
2L	17925555	2L_17925555_SNP [dm3] 2L_17925555_SNP [dm6]	C	A	1.983e^-4	0.918	INTERGENIC
2L	591095	2L_591095_SNP [dm3] 2L_591095_SNP [dm6]	A	G	1.983e^-4	0.918	INTRON Gsc
3R	19036032	3R_19036032_SNP [dm3] 3R_23210310_SNP [dm6]	A	G	1.990e^-4	0.918	INTRON cnc
3L	10871548	3L_10871548_SNP [dm3] 3L_10878448_SNP [dm6]	G	A	1.991e^-4	0.918	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	647600	3L_647600_SNP [dm3] 3L_647600_SNP [dm6]	G	A	1.998e^-4	0.918	UPSTREAM Gale INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	3579748	2R_3579748_SNP [dm3] 2R_7692243_SNP [dm6]	G	A	2.003e^-4	0.918	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19236703	3L_19236703_SNP [dm3] 3L_19243603_SNP [dm6]	T	C	2.014e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14576961	2L_14576961_DEL [dm3] 2L_14576961_DEL [dm6]	TAGG	CCA	2.028e^-4	0.918	EXON CR44856	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11732744	2R_11732744_SNP [dm3] 2R_15845239_SNP [dm6]	C	A	2.030e^-4	0.918	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
2R	12315534	2R_12315534_SNP [dm3] 2R_16428029_SNP [dm6]	A	T	2.031e^-4	0.918	INTRON Sema-2b
3R	3167009	3R_3167009_SNP [dm3] 3R_7341287_SNP [dm6]	G	A	2.032e^-4	0.918	INTERGENIC
3L	9628708	3L_9628708_SNP [dm3] 3L_9635608_SNP [dm6]	A	G	2.034e^-4	0.918	INTRON fry
2L	14595511	2L_14595511_SNP [dm3] 2L_14595511_SNP [dm6]	A	G	2.047e^-4	0.918	INTERGENIC
3R	23047366	3R_23047366_SNP [dm3] 3R_27221644_SNP [dm6]	A	C	2.053e^-4	0.918	INTERGENIC
X	11162595	X_11162595_SNP [dm3] X_11268562_SNP [dm6]	G	C	2.054e^-4	0.918	INTRON CG44422
3L	7229842	3L_7229842_SNP [dm3] 3L_7236742_SNP [dm6]	A	G	2.062e^-4	0.918	DOWNSTREAM CG14829 & 1 other INTERGENIC
X	1205756	X_1205756_SNP [dm3] X_1311723_SNP [dm6]	C	T	2.064e^-4	0.918	INTRON DAAM
3R	4959457	3R_4959457_SNP [dm3] 3R_9133735_SNP [dm6]	G	A	2.072e^-4	0.918	INTRON pum
2L	1701442	2L_1701442_SNP [dm3] 2L_1701442_SNP [dm6]	G	A	2.076e^-4	0.918	UTR_3_PRIME chinmo
3L	3291933	3L_3291933_DEL [dm3] 3L_3291933_DEL [dm6]	AACT	A	2.082e^-4	0.918	INTRON CG12009
3L	3291940	3L_3291940_DEL [dm3] 3L_3291940_DEL [dm6]	GGGTT	A	2.082e^-4	0.918	INTRON CG12009
3L	3291967	3L_3291967_INS [dm3] 3L_3291967_INS [dm6]	A	TATTACAAT	2.082e^-4	0.918	INTRON CG12009
3L	3291984	3L_3291984_SNP [dm3] 3L_3291984_SNP [dm6]	C	T	2.082e^-4	0.918	INTRON CG12009
3L	21621086	3L_21621086_SNP [dm3] 3L_21627986_SNP [dm6]	C	T	2.105e^-4	0.924	SYNONYMOUS_CODING CG11306 DOWNSTREAM MED1
3R	24275284	3R_24275284_SNP [dm3] 3R_28449562_SNP [dm6]	C	A	2.106e^-4	0.924	INTRON beat-VI	TF binding site mE1_TFBS_inv
3L	18539326	3L_18539326_SNP [dm3] 3L_18546226_SNP [dm6]	G	T	2.116e^-4	0.924	INTERGENIC
X	17038106	X_17038106_DEL [dm3] X_17144073_DEL [dm6]	TTAAGCTCTAT...	T	2.119e^-4	0.924	UPSTREAM snoRNA:Psi28S-1192d DOWNSTREAM snoRNA:Psi28S-1192c & 3 others INTRON RpS5a
3R	5385203	3R_5385203_SNP [dm3] 3R_9559481_SNP [dm6]	T	C	2.120e^-4	0.924	UTR_5_PRIME AP-1mu UPSTREAM MBD-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
X	21889690	X_21889690_SNP [dm3] X_22487854_SNP [dm6]	A	C	2.130e^-4	0.926	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493
2L	15141703	2L_15141703_SNP [dm3] 2L_15141703_SNP [dm6]	G	A	2.148e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16754675	3L_16754675_SNP [dm3] 3L_16761575_SNP [dm6]	T	C	2.153e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	9628712	3L_9628712_SNP [dm3] 3L_9635612_SNP [dm6]	G	T	2.160e^-4	0.929	INTRON fry
3R	995302	3R_995302_SNP [dm3] 3R_5169580_SNP [dm6]	T	C	2.160e^-4	0.929	UTR_3_PRIME dpr16
3L	7229852	3L_7229852_DEL [dm3] 3L_7236752_DEL [dm6]	CTTTTATTTATTTCTTTGA...	T	2.162e^-4	0.929	DOWNSTREAM CG14829 & 1 other INTERGENIC
3R	20225351	3R_20225351_SNP [dm3] 3R_24399629_SNP [dm6]	T	A	2.177e^-4	0.931	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_run
3L	18503473	3L_18503473_SNP [dm3] 3L_18510373_SNP [dm6]	C	A	2.183e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	2073938	2L_2073938_SNP [dm3] 2L_2073938_SNP [dm6]	A	G	2.199e^-4	0.931	INTRON dpr3
2R	20235562	2R_20235562_SNP [dm3] 2R_24348039_SNP [dm6]	T	C	2.199e^-4	0.931	INTRON bs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	819469	2L_819469_SNP [dm3] 2L_819469_SNP [dm6]	C	A	2.201e^-4	0.931	UTR_5_PRIME CG3876 UPSTREAM Clp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_sens
2L	20042838	2L_20042838_SNP [dm3] 2L_20042838_SNP [dm6]	G	A	2.202e^-4	0.931	INTRON sNPF
3L	13999802	3L_13999802_SNP [dm3] 3L_14006702_SNP [dm6]	G	A	2.205e^-4	0.931	INTRON upSET	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6203390	2R_6203390_SNP [dm3] 2R_10315885_SNP [dm6]	C	T	2.210e^-4	0.931	INTRON Ndg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10008514	2L_10008514_DEL [dm3] 2L_10008514_DEL [dm6]	TT	T	2.211e^-4	0.931	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
X	9486710	X_9486710_SNP [dm3] X_9592677_SNP [dm6]	T	C	2.221e^-4	0.933	INTERGENIC
2L	7400944	2L_7400944_SNP [dm3] 2L_7400944_SNP [dm6]	A	T	2.231e^-4	0.934	UPSTREAM CG5171 INTERGENIC
2L	4270318	2L_4270318_INS [dm3] 2L_4270318_INS [dm6]	C	TA	2.232e^-4	0.934	INTERGENIC
3R	5260741	3R_5260741_SNP [dm3] 3R_9435019_SNP [dm6]	A	C	2.244e^-4	0.935	INTRON ps	TF binding site mE1_TFBS_cad
2R	11751390	2R_11751390_SNP [dm3] 2R_15863885_SNP [dm6]	T	C	2.245e^-4	0.935	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15631303	X_15631303_SNP [dm3] X_15737270_SNP [dm6]	C	T	2.250e^-4	0.935	UPSTREAM Arp6 DOWNSTREAM CG11679 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8890223	2L_8890223_SNP [dm3] 2L_8890223_SNP [dm6]	G	A	2.272e^-4	0.939	INTERGENIC
2L	14454906	2L_14454906_SNP [dm3] 2L_14454906_SNP [dm6]	T	C	2.278e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	17544115	2L_17544115_SNP [dm3] 2L_17544115_SNP [dm6]	C	A	2.284e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	7229847	3L_7229847_SNP [dm3] 3L_7236747_SNP [dm6]	A	T	2.291e^-4	0.939	DOWNSTREAM CG14829 & 1 other INTERGENIC
2R	11881871	2R_11881871_SNP [dm3] 2R_15994366_SNP [dm6]	G	A	2.292e^-4	0.939	SYNONYMOUS_CODING ATPCL DOWNSTREAM CG8320
3L	1561299	3L_1561299_SNP [dm3] 3L_1561299_SNP [dm6]	T	C	2.300e^-4	0.939	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5752890	X_5752890_DEL [dm3] X_5858857_DEL [dm6]	TCTGCA	T	2.308e^-4	0.939	INTERGENIC
3R	4619272	3R_4619272_SNP [dm3] 3R_8793550_SNP [dm6]	A	C	2.314e^-4	0.939	INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA
X	10949718	X_10949718_SNP [dm3] X_11055685_SNP [dm6]	G	T	2.315e^-4	0.939	INTERGENIC
3L	7233119	3L_7233119_SNP [dm3] 3L_7240019_SNP [dm6]	G	A	2.317e^-4	0.939	DOWNSTREAM RpL18 INTRON BHD	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16655398	3L_16655398_SNP [dm3] 3L_16662298_SNP [dm6]	C	T	2.319e^-4	0.939	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	9485556	X_9485556_SNP [dm3] X_9591523_SNP [dm6]	G	A	2.328e^-4	0.939	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26549522	3R_26549522_INS [dm3] 3R_30723800_INS [dm6]	T	TATAGGC	2.328e^-4	0.939	INTERGENIC
3R	17028150	3R_17028150_SNP [dm3] 3R_21202428_SNP [dm6]	T	A	2.345e^-4	0.939	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
3L	11449997	3L_11449997_SNP [dm3] 3L_11456897_SNP [dm6]	A	G	2.347e^-4	0.939	DOWNSTREAM CG12289 INTERGENIC
2L	827229	2L_827229_SNP [dm3] 2L_827229_SNP [dm6]	G	A	2.356e^-4	0.939	INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3763334	2R_3763334_SNP [dm3] 2R_7875829_SNP [dm6]	T	A	2.364e^-4	0.939	INTRON Dgk
3L	10900429	3L_10900429_SNP [dm3] 3L_10907329_SNP [dm6]	T	A	2.380e^-4	0.939	INTERGENIC
2R	11038840	2R_11038840_SNP [dm3] 2R_15151335_SNP [dm6]	C	T	2.395e^-4	0.939	INTERGENIC
3R	20015870	3R_20015870_SNP [dm3] 3R_24190148_SNP [dm6]	C	A	2.399e^-4	0.939	SYNONYMOUS_CODING jnj
2L	4324100	2L_4324100_SNP [dm3] 2L_4324100_SNP [dm6]	C	T	2.401e^-4	0.939	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC
X	8839250	X_8839250_SNP [dm3] X_8945217_SNP [dm6]	T	A	2.413e^-4	0.939	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12189408	X_12189408_SNP [dm3] X_12295375_SNP [dm6]	C	T	2.415e^-4	0.939	INTRON Ten-a
2L	1623863	2L_1623863_SNP [dm3] 2L_1623863_SNP [dm6]	T	A	2.433e^-4	0.939	UPSTREAM CR44603 EXON CR44603
3L	19622814	3L_19622814_SNP [dm3] 3L_19629714_SNP [dm6]	G	C	2.434e^-4	0.939	NON_SYNONYMOUS_CODING wnd
3L	13677847	3L_13677847_SNP [dm3] 3L_13684747_SNP [dm6]	C	T	2.453e^-4	0.939	INTRON bru-3
3L	19347008	3L_19347008_SNP [dm3] 3L_19353908_SNP [dm6]	T	A	2.461e^-4	0.939	INTRON CG32206
3L	2016362	3L_2016362_SNP [dm3] 3L_2016362_SNP [dm6]	G	A	2.464e^-4	0.939	INTERGENIC
2L	16420764	2L_16420764_SNP [dm3] 2L_16420764_SNP [dm6]	A	G	2.466e^-4	0.939	INTRON CG5888
X	4811995	X_4811995_DEL [dm3] X_4917962_DEL [dm6]	GTCG	C	2.470e^-4	0.939	UPSTREAM CG6903 INTRON CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11343663	3R_11343663_SNP [dm3] 3R_15517941_SNP [dm6]	G	T	2.479e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20015572	3R_20015572_SNP [dm3] 3R_24189850_SNP [dm6]	A	G	2.479e^-4	0.939	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
2L	16808317	2L_16808317_SNP [dm3] 2L_16808317_SNP [dm6]	C	G	2.483e^-4	0.939	INTRON CG13280 & 1 other
2L	3601441	2L_3601441_SNP [dm3] 2L_3601441_SNP [dm6]	T	A	2.483e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5251261	3L_5251261_DEL [dm3] 3L_5258161_DEL [dm6]	TAA	T	2.495e^-4	0.939	INTRON shep
X	6675726	X_6675726_SNP [dm3] X_6781693_SNP [dm6]	G	A	2.498e^-4	0.939	UTR_3_PRIME C3G
3R	995208	3R_995208_SNP [dm3] 3R_5169486_SNP [dm6]	A	G	2.501e^-4	0.939	NON_SYNONYMOUS_CODING dpr16
3L	2131758	3L_2131758_SNP [dm3] 3L_2131758_SNP [dm6]	C	T	2.502e^-4	0.939	NON_SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8104066	3R_8104066_SNP [dm3] 3R_12278344_SNP [dm6]	A	C	2.509e^-4	0.939	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	6848622	3L_6848622_DEL [dm3] 3L_6855522_DEL [dm6]	GG	C	2.510e^-4	0.939	INTERGENIC
3L	22844563	3L_22844563_SNP [dm3] 3L_22851463_SNP [dm6]	C	A	2.514e^-4	0.939	UPSTREAM CR43426 DOWNSTREAM CG32462 INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14423136	2L_14423136_SNP [dm3] 2L_14423136_SNP [dm6]	A	G	2.517e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2771152	3L_2771152_SNP [dm3] 3L_2771152_SNP [dm6]	G	A	2.520e^-4	0.939	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10853785	2R_10853785_SNP [dm3] 2R_14966280_SNP [dm6]	C	T	2.520e^-4	0.939	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2093382	2L_2093382_SNP [dm3] 2L_2093382_SNP [dm6]	A	T	2.530e^-4	0.939	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
2L	15360128	2L_15360128_SNP [dm3] 2L_15360128_SNP [dm6]	G	A	2.531e^-4	0.939	DOWNSTREAM CG15258 INTERGENIC
3L	19573031	3L_19573031_SNP [dm3] 3L_19579931_SNP [dm6]	A	G	2.531e^-4	0.939	INTRON Shal
3L	8606673	3L_8606673_SNP [dm3] 3L_8613573_SNP [dm6]	T	A	2.532e^-4	0.939	INTRON CG6282
3L	19264023	3L_19264023_SNP [dm3] 3L_19270923_SNP [dm6]	A	T	2.534e^-4	0.939	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
3R	1761032	3R_1761032_SNP [dm3] 3R_5935310_SNP [dm6]	C	T	2.536e^-4	0.939	INTRON CG34113
3L	18539416	3L_18539416_INS [dm3] 3L_18546316_INS [dm6]	A	AC	2.553e^-4	0.939	INTERGENIC
3R	11770495	3R_11770495_SNP [dm3] 3R_15944773_SNP [dm6]	G	A	2.558e^-4	0.939	INTRON Sap47
3R	9987666	3R_9987666_SNP [dm3] 3R_14161944_SNP [dm6]	A	C	2.560e^-4	0.939	UPSTREAM CG3199 INTERGENIC
X	5140837	X_5140837_SNP [dm3] X_5246804_SNP [dm6]	G	A	2.565e^-4	0.939	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465	TF binding site mE1_TFBS_HSA
2L	4313876	2L_4313876_SNP [dm3] 2L_4313876_SNP [dm6]	A	G	2.569e^-4	0.939	INTRON tutl
2R	12932843	2R_12932843_SNP [dm3] 2R_17045338_SNP [dm6]	A	T	2.570e^-4	0.939	NON_SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_sens
2R	18034032	2R_18034032_SNP [dm3] 2R_22146527_SNP [dm6]	A	G	2.577e^-4	0.939	INTRON a
3R	24275460	3R_24275460_SNP [dm3] 3R_28449738_SNP [dm6]	T	C	2.582e^-4	0.939	INTRON beat-VI
X	5262865	X_5262865_SNP [dm3] X_5368832_SNP [dm6]	A	G	2.586e^-4	0.939	INTRON SK
2R	10206234	2R_10206234_SNP [dm3] 2R_14318729_SNP [dm6]	T	G	2.589e^-4	0.939	INTRON Shroom
3R	24275277	3R_24275277_SNP [dm3] 3R_28449555_SNP [dm6]	T	C	2.589e^-4	0.939	INTRON beat-VI	TF binding site mE1_TFBS_inv
3R	23522164	3R_23522164_SNP [dm3] 3R_27696442_SNP [dm6]	C	T	2.605e^-4	0.939	SYNONYMOUS_CODING CG43320 DOWNSTREAM ALiX
2L	9965343	2L_9965343_SNP [dm3] 2L_9965343_SNP [dm6]	T	G	2.605e^-4	0.939	INTRON Dref	TF binding site mE1_TFBS_sens
2R	6292178	2R_6292178_SNP [dm3] 2R_10404673_SNP [dm6]	C	T	2.608e^-4	0.939	INTRON CG42732
2L	19851271	2L_19851271_SNP [dm3] 2L_19851271_SNP [dm6]	T	A	2.613e^-4	0.939	INTRON sick
2L	14342162	2L_14342162_SNP [dm3] 2L_14342162_SNP [dm6]	C	T	2.630e^-4	0.939	UTR_5_PRIME CG33090 INTRON CG33090
3L	10886658	3L_10886658_SNP [dm3] 3L_10893558_SNP [dm6]	T	C	2.637e^-4	0.939	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
3L	6848743	3L_6848743_SNP [dm3] 3L_6855643_SNP [dm6]	T	C	2.648e^-4	0.939	INTERGENIC
3L	7233234	3L_7233234_SNP [dm3] 3L_7240134_SNP [dm6]	T	C	2.651e^-4	0.939	SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site mE1_TFBS_cad
3L	19236677	3L_19236677_SNP [dm3] 3L_19243577_SNP [dm6]	C	T	2.652e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17295385	2L_17295385_SNP [dm3] 2L_17295385_SNP [dm6]	A	G	2.657e^-4	0.939	INTERGENIC
2L	4990478	2L_4990478_SNP [dm3] 2L_4990478_SNP [dm6]	T	A	2.661e^-4	0.939	INTRON CG34126
3R	22236063	3R_22236063_SNP [dm3] 3R_26410341_SNP [dm6]	T	G	2.676e^-4	0.939	INTERGENIC
3L	14212401	3L_14212401_SNP [dm3] 3L_14219301_SNP [dm6]	T	C	2.682e^-4	0.939	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
2L	14199350	2L_14199350_SNP [dm3] 2L_14199350_SNP [dm6]	A	G	2.682e^-4	0.939	INTRON Dyrk2
3L	19426273	3L_19426273_SNP [dm3] 3L_19433173_SNP [dm6]	A	C	2.692e^-4	0.939	INTERGENIC
3L	10872497	3L_10872497_SNP [dm3] 3L_10879397_SNP [dm6]	C	G	2.696e^-4	0.939	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19345833	3L_19345833_INS [dm3] 3L_19352733_INS [dm6]	T	TTTCA	2.696e^-4	0.939	INTRON CG32206
3L	16655361	3L_16655361_INS [dm3] 3L_16662261_INS [dm6]	A	ATGAAAAAATGCCTTTTG...	2.698e^-4	0.939	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22236096	3R_22236096_SNP [dm3] 3R_26410374_SNP [dm6]	C	A	2.702e^-4	0.939	INTERGENIC
3L	18191200	3L_18191200_SNP [dm3] 3L_18198100_SNP [dm6]	G	A	2.707e^-4	0.939	INTERGENIC
3R	995315	3R_995315_SNP [dm3] 3R_5169593_SNP [dm6]	C	A	2.714e^-4	0.939	UTR_3_PRIME dpr16
2L	16476829	2L_16476829_SNP [dm3] 2L_16476829_SNP [dm6]	C	T	2.719e^-4	0.939	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4850939	2L_4850939_SNP [dm3] 2L_4850939_SNP [dm6]	C	G	2.733e^-4	0.939	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2	TF binding site mE1_TFBS_sens
2L	14452080	2L_14452080_SNP [dm3] 2L_14452080_SNP [dm6]	A	G	2.736e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2085726	2L_2085726_SNP [dm3] 2L_2085726_SNP [dm6]	G	A	2.738e^-4	0.939	INTRON dpr3
3L	13129556	3L_13129556_SNP [dm3] 3L_13136456_SNP [dm6]	C	A	2.741e^-4	0.939	SPLICE_SITE_REGION CG33262 INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18539328	3L_18539328_SNP [dm3] 3L_18546228_SNP [dm6]	A	G	2.746e^-4	0.939	INTERGENIC
3L	2995450	3L_2995450_SNP [dm3] 3L_2995450_SNP [dm6]	C	A	2.746e^-4	0.939	NON_SYNONYMOUS_CODING CG2113
3L	9439657	3L_9439657_SNP [dm3] 3L_9446557_SNP [dm6]	A	T	2.751e^-4	0.939	UPSTREAM CG3529 DOWNSTREAM CG33926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
X	17184780	X_17184780_SNP [dm3] X_17290747_SNP [dm6]	C	A	2.764e^-4	0.939	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_sens
3R	23522978	3R_23522978_SNP [dm3] 3R_27697256_SNP [dm6]	G	A	2.771e^-4	0.939	SYNONYMOUS_CODING ALiX DOWNSTREAM CG43320	TF binding site mE1_TFBS_chinmo
2L	8808532	2L_8808532_SNP [dm3] 2L_8808532_SNP [dm6]	G	C	2.775e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1671738	3L_1671738_SNP [dm3] 3L_1671738_SNP [dm6]	G	A	2.781e^-4	0.939	SYNONYMOUS_CODING CG13930	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16086374	2L_16086374_SNP [dm3] 2L_16086374_SNP [dm6]	G	T	2.818e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4504790	2R_4504790_SNP [dm3] 2R_8617285_SNP [dm6]	T	C	2.818e^-4	0.939	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16475798	2L_16475798_DEL [dm3] 2L_16475798_DEL [dm6]	CCGTG	C	2.822e^-4	0.939	INTRON dac
2R	10853765	2R_10853765_INS [dm3] 2R_14966260_INS [dm6]	T	AA	2.831e^-4	0.939	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3159271	2L_3159271_SNP [dm3] 2L_3159271_SNP [dm6]	C	G	2.832e^-4	0.939	UPSTREAM gkt INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14128598	3L_14128598_SNP [dm3] 3L_14135498_SNP [dm6]	C	A	2.837e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	4388689	2L_4388689_SNP [dm3] 2L_4388689_SNP [dm6]	T	C	2.847e^-4	0.939	UTR_5_PRIME Tps1
2R	7324224	2R_7324224_SNP [dm3] 2R_11436719_SNP [dm6]	A	T	2.853e^-4	0.939	INTRON CG7777
3L	15350910	3L_15350910_SNP [dm3] 3L_15357810_SNP [dm6]	C	A	2.855e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5262781	X_5262781_SNP [dm3] X_5368748_SNP [dm6]	T	C	2.859e^-4	0.939	INTRON SK
3L	8393139	3L_8393139_SNP [dm3] 3L_8400039_SNP [dm6]	T	C	2.865e^-4	0.939	INTRON CG7120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3631495	2L_3631495_SNP [dm3] 2L_3631495_SNP [dm6]	A	G	2.866e^-4	0.939	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7400946	2L_7400946_SNP [dm3] 2L_7400946_SNP [dm6]	T	A	2.867e^-4	0.939	UPSTREAM CG5171 INTERGENIC
3L	5518698	3L_5518698_DEL [dm3] 3L_5525598_DEL [dm6]	TGCC	T	2.868e^-4	0.939	INTRON Lkr
3L	19345825	3L_19345825_SNP [dm3] 3L_19352725_SNP [dm6]	G	A	2.874e^-4	0.939	INTRON CG32206
2R	19893069	2R_19893069_SNP [dm3] 2R_24005546_SNP [dm6]	C	G	2.878e^-4	0.939	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18539424	3L_18539424_SNP [dm3] 3L_18546324_SNP [dm6]	G	A	2.878e^-4	0.939	INTERGENIC
2L	14809911	2L_14809911_SNP [dm3] 2L_14809911_SNP [dm6]	C	A	2.886e^-4	0.939	UPSTREAM CG33309 INTERGENIC
3L	2185682	3L_2185682_SNP [dm3] 3L_2185682_SNP [dm6]	T	A	2.890e^-4	0.939	UPSTREAM CG13810 INTERGENIC
2L	6671666	2L_6671666_INS [dm3] 2L_6671666_INS [dm6]	G	GG	2.894e^-4	0.939	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	10886576	3L_10886576_SNP [dm3] 3L_10893476_SNP [dm6]	G	A	2.896e^-4	0.939	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	10886596	3L_10886596_SNP [dm3] 3L_10893496_SNP [dm6]	C	T	2.896e^-4	0.939	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	15360127	2L_15360127_SNP [dm3] 2L_15360127_SNP [dm6]	A	T	2.900e^-4	0.939	DOWNSTREAM CG15258 INTERGENIC
X	5230214	X_5230214_SNP [dm3] X_5336181_SNP [dm6]	T	C	2.906e^-4	0.939	INTERGENIC
3R	1004077	3R_1004077_SNP [dm3] 3R_5178355_SNP [dm6]	C	T	2.910e^-4	0.939	DOWNSTREAM cno INTRON cno
3L	13167700	3L_13167700_SNP [dm3] 3L_13174600_SNP [dm6]	G	A	2.914e^-4	0.939	SYNONYMOUS_CODING snky
3R	3456378	3R_3456378_SNP [dm3] 3R_7630656_SNP [dm6]	C	T	2.917e^-4	0.939	INTRON CG34127
X	5175694	X_5175694_SNP [dm3] X_5281661_SNP [dm6]	C	G	2.918e^-4	0.939	INTERGENIC
2L	19249697	2L_19249697_SNP [dm3] 2L_19249697_SNP [dm6]	A	T	2.927e^-4	0.939	INTERGENIC
2R	6203253	2R_6203253_SNP [dm3] 2R_10315748_SNP [dm6]	G	T	2.933e^-4	0.939	INTRON Ndg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16896551	3L_16896551_SNP [dm3] 3L_16903451_SNP [dm6]	A	G	2.935e^-4	0.939	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	2.936e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	6854334	3L_6854334_SNP [dm3] 3L_6861234_SNP [dm6]	C	A	2.938e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_sens
3R	22236058	3R_22236058_SNP [dm3] 3R_26410336_SNP [dm6]	G	A	2.944e^-4	0.939	INTERGENIC
2L	1123329	2L_1123329_SNP [dm3] 2L_1123329_SNP [dm6]	G	A	2.957e^-4	0.939	INTRON Pino
2L	12949373	2L_12949373_SNP [dm3] 2L_12949373_SNP [dm6]	A	T	2.972e^-4	0.939	INTERGENIC
2L	12949388	2L_12949388_SNP [dm3] 2L_12949388_SNP [dm6]	T	C	2.972e^-4	0.939	INTERGENIC
2R	9959620	2R_9959620_SNP [dm3] 2R_14072115_SNP [dm6]	C	T	2.974e^-4	0.939	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	457563	3L_457563_SNP [dm3] 3L_457563_SNP [dm6]	T	C	2.974e^-4	0.939	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2308616	3R_2308616_SNP [dm3] 3R_6482894_SNP [dm6]	A	G	2.979e^-4	0.939	UTR_5_PRIME CG15186 INTRON CG15186
3R	8804082	3R_8804082_SNP [dm3] 3R_12978360_SNP [dm6]	C	G	2.982e^-4	0.939	SYNONYMOUS_CODING CG7091 UPSTREAM CG7381	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10901883	3L_10901883_INS [dm3] 3L_10908783_INS [dm6]	T	TAAC	2.991e^-4	0.939	INTERGENIC
3L	6848758	3L_6848758_SNP [dm3] 3L_6855658_SNP [dm6]	T	C	2.991e^-4	0.939	INTERGENIC
X	16768777	X_16768777_SNP [dm3] X_16874744_SNP [dm6]	A	T	2.992e^-4	0.939	UTR_5_PRIME CG13003 INTRON CG13003
2L	14452105	2L_14452105_SNP [dm3] 2L_14452105_SNP [dm6]	A	G	2.993e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1191648	2L_1191648_SNP [dm3] 2L_1191648_SNP [dm6]	G	A	2.994e^-4	0.939	UTR_5_PRIME CG5001	TF binding site mE1_TFBS_cad
3L	18503843	3L_18503843_SNP [dm3] 3L_18510743_SNP [dm6]	G	A	2.996e^-4	0.939	INTERGENIC
3L	9628674	3L_9628674_SNP [dm3] 3L_9635574_SNP [dm6]	T	C	2.996e^-4	0.939	INTRON fry
X	9595859	X_9595859_SNP [dm3] X_9701826_SNP [dm6]	T	A	2.997e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17280754	2L_17280754_SNP [dm3] 2L_17280754_SNP [dm6]	A	T	3.000e^-4	0.939	DOWNSTREAM CR45729 INTERGENIC
2L	19827678	2L_19827678_SNP [dm3] 2L_19827678_SNP [dm6]	C	T	3.009e^-4	0.939	SYNONYMOUS_CODING sick START_GAINED sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10332962	X_10332962_SNP [dm3] X_10438929_SNP [dm6]	T	C	3.018e^-4	0.939	INTRON CG32683
3R	22287137	3R_22287137_SNP [dm3] 3R_26461415_SNP [dm6]	A	G	3.020e^-4	0.939	UPSTREAM CG5455 DOWNSTREAM CG14238 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7830162	3L_7830162_SNP [dm3] 3L_7837062_SNP [dm6]	C	T	3.035e^-4	0.939	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12432068	X_12432068_SNP [dm3] X_12538035_SNP [dm6]	T	A	3.036e^-4	0.939	INTRON CG43921
3L	8278043	3L_8278043_SNP [dm3] 3L_8284943_SNP [dm6]	G	C	3.037e^-4	0.939	INTRON cert
3L	13384652	3L_13384652_SNP [dm3] 3L_13391552_SNP [dm6]	T	A	3.040e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	16493517	3L_16493517_SNP [dm3] 3L_16500417_SNP [dm6]	G	A	3.047e^-4	0.939	UTR_3_PRIME st INTRON CG43373
3R	2032435	3R_2032435_SNP [dm3] 3R_6206713_SNP [dm6]	T	A	3.048e^-4	0.939	INTRON Osi24
2L	21329165	2L_21329165_SNP [dm3] 2L_21329165_SNP [dm6]	C	T	3.054e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4489500	2L_4489500_SNP [dm3] 2L_4489500_SNP [dm6]	G	C	3.056e^-4	0.939	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18539401	3L_18539401_SNP [dm3] 3L_18546301_SNP [dm6]	C	G	3.061e^-4	0.939	INTERGENIC
3L	10901982	3L_10901982_DEL [dm3] 3L_10908882_DEL [dm6]	TA	T	3.066e^-4	0.939	INTERGENIC
3L	18543169	3L_18543169_SNP [dm3] 3L_18550069_SNP [dm6]	A	G	3.066e^-4	0.939	INTERGENIC
2L	4324054	2L_4324054_SNP [dm3] 2L_4324054_SNP [dm6]	G	T	3.075e^-4	0.939	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC
X	4638203	X_4638203_SNP [dm3] X_4744170_SNP [dm6]	A	T	3.086e^-4	0.939	INTERGENIC
3L	11142169	3L_11142169_SNP [dm3] 3L_11149069_SNP [dm6]	G	A	3.090e^-4	0.939	DOWNSTREAM CG6216 INTRON CG32082
2R	11982229	2R_11982229_SNP [dm3] 2R_16094724_SNP [dm6]	A	G	3.091e^-4	0.939	INTRON Dg
X	11111852	X_11111852_DEL [dm3] X_11217819_DEL [dm6]	AA	A	3.096e^-4	0.939	INTERGENIC
3L	14710843	3L_14710843_SNP [dm3] 3L_14717743_SNP [dm6]	T	A	3.097e^-4	0.939	INTRON ome
2L	291088	2L_291088_SNP [dm3] 2L_291088_SNP [dm6]	T	A	3.104e^-4	0.939	INTRON CG3625
3R	12193000	3R_12193000_SNP [dm3] 3R_16367278_SNP [dm6]	T	C	3.105e^-4	0.939	INTRON CG14880	regulatory region REDfly_CRMs
3L	12811971	3L_12811971_SNP [dm3] 3L_12818871_SNP [dm6]	C	T	3.115e^-4	0.939	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
3L	18539432	3L_18539432_SNP [dm3] 3L_18546332_SNP [dm6]	A	G	3.122e^-4	0.939	INTERGENIC
2L	13871819	2L_13871819_SNP [dm3] 2L_13871819_SNP [dm6]	G	A	3.125e^-4	0.939	INTRON CenG1A
2L	17799180	2L_17799180_SNP [dm3] 2L_17799180_SNP [dm6]	C	T	3.128e^-4	0.939	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14473104	2L_14473104_SNP [dm3] 2L_14473104_SNP [dm6]	T	C	3.128e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	18539303	3L_18539303_SNP [dm3] 3L_18546203_SNP [dm6]	A	T	3.128e^-4	0.939	INTERGENIC
X	9813474	X_9813474_SNP [dm3] X_9919441_SNP [dm6]	G	A	3.129e^-4	0.939	INTERGENIC
X	15849383	X_15849383_SNP [dm3] X_15955350_SNP [dm6]	G	T	3.144e^-4	0.939	INTRON mmd	TF binding site mE1_TFBS_HSA
X	11520685	X_11520685_SNP [dm3] X_11626652_SNP [dm6]	G	C	3.146e^-4	0.939	INTRON Ptp10D
3L	6055052	3L_6055052_DEL [dm3] 3L_6061952_DEL [dm6]	GG	G	3.157e^-4	0.939	DOWNSTREAM CG6592 INTRON CG10472
X	1211854	X_1211854_SNP [dm3] X_1317821_SNP [dm6]	G	C	3.158e^-4	0.939	INTRON DAAM	TF binding site BDTNP1_TFBS_twi
2L	3141046	2L_3141046_SNP [dm3] 2L_3141046_SNP [dm6]	A	G	3.164e^-4	0.939	INTRON toc
2R	18553634	2R_18553634_SNP [dm3] 2R_22666129_SNP [dm6]	T	A	3.166e^-4	0.939	UTR_3_PRIME CG42867 UPSTREAM CR42868 EXON CR45269
X	1208583	X_1208583_SNP [dm3] X_1314550_SNP [dm6]	C	G	3.171e^-4	0.939	INTRON DAAM	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4079040	3L_4079040_SNP [dm3] 3L_4079040_SNP [dm6]	A	G	3.173e^-4	0.939	SYNONYMOUS_CODING Gad1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16226517	2R_16226517_SNP [dm3] 2R_20339012_SNP [dm6]	G	T	3.176e^-4	0.939	INTERGENIC
2L	7400964	2L_7400964_SNP [dm3] 2L_7400964_SNP [dm6]	C	A	3.180e^-4	0.939	UPSTREAM CG5171 INTERGENIC
3R	3157472	3R_3157472_SNP [dm3] 3R_7331750_SNP [dm6]	C	T	3.183e^-4	0.939	EXON CR44337
3R	3545685	3R_3545685_SNP [dm3] 3R_7719963_SNP [dm6]	T	C	3.190e^-4	0.939	UPSTREAM CR44260 INTERGENIC
2L	17922179	2L_17922179_SNP [dm3] 2L_17922179_SNP [dm6]	C	T	3.195e^-4	0.939	INTERGENIC
3L	13506339	3L_13506339_SNP [dm3] 3L_13513239_SNP [dm6]	C	T	3.201e^-4	0.939	UPSTREAM Liprin-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	7324173	2R_7324173_SNP [dm3] 2R_11436668_SNP [dm6]	C	T	3.212e^-4	0.939	INTRON CG7777
2R	7324175	2R_7324175_SNP [dm3] 2R_11436670_SNP [dm6]	A	T	3.212e^-4	0.939	INTRON CG7777
3R	22991735	3R_22991735_SNP [dm3] 3R_27166013_SNP [dm6]	A	G	3.217e^-4	0.939	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	17176522	2R_17176522_SNP [dm3] 2R_21289017_SNP [dm6]	C	T	3.220e^-4	0.939	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	21607389	3L_21607389_SNP [dm3] 3L_21614289_SNP [dm6]	G	A	3.230e^-4	0.939	NON_SYNONYMOUS_CODING S1P DOWNSTREAM TfAP-2
2R	12932895	2R_12932895_SNP [dm3] 2R_17045390_SNP [dm6]	G	A	3.243e^-4	0.939	NON_SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17251387	2L_17251387_SNP [dm3] 2L_17251387_SNP [dm6]	G	C	3.244e^-4	0.939	INTRON beat-IIIc
2L	14496315	2L_14496315_SNP [dm3] 2L_14496315_SNP [dm6]	A	G	3.247e^-4	0.939	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	13166305	3L_13166305_SNP [dm3] 3L_13173205_SNP [dm6]	A	T	3.249e^-4	0.939	INTERGENIC
3L	11424995	3L_11424995_SNP [dm3] 3L_11431895_SNP [dm6]	T	C	3.250e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22991750	3R_22991750_SNP [dm3] 3R_27166028_SNP [dm6]	C	T	3.253e^-4	0.939	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	791869	2R_791869_SNP [dm3] 2R_4904364_SNP [dm6]	T	C	3.268e^-4	0.939	INTRON CG44102	transposable element FlyBase
2R	10772684	2R_10772684_SNP [dm3] 2R_14885179_SNP [dm6]	C	T	3.276e^-4	0.939	DOWNSTREAM Cyp6a21 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	619691	2L_619691_SNP [dm3] 2L_619691_SNP [dm6]	C	G	3.295e^-4	0.939	DOWNSTREAM lectin-21Cb INTERGENIC
3L	11351594	3L_11351594_SNP [dm3] 3L_11358494_SNP [dm6]	T	A	3.300e^-4	0.939	INTERGENIC
3L	10871347	3L_10871347_SNP [dm3] 3L_10878247_SNP [dm6]	G	A	3.307e^-4	0.939	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
X	12758989	X_12758989_DEL [dm3] X_12864956_DEL [dm6]	AGTCCA	A	3.311e^-4	0.939	INTRON Pde9
3L	11896934	3L_11896934_SNP [dm3] 3L_11903834_SNP [dm6]	T	G	3.316e^-4	0.939	INTRON CG44837
2L	13105557	2L_13105557_SNP [dm3] 2L_13105557_SNP [dm6]	G	T	3.322e^-4	0.939	DOWNSTREAM CR45461 INTERGENIC
X	9594431	X_9594431_DEL [dm3] X_9700398_DEL [dm6]	TT	T	3.328e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8765798	2L_8765798_DEL [dm3] 2L_8765798_DEL [dm6]	TCTTAGT	T	3.328e^-4	0.939	CODON_DELETION CG9463
2R	6797065	2R_6797065_SNP [dm3] 2R_10909560_SNP [dm6]	C	T	3.335e^-4	0.939	UPSTREAM Obp47a INTERGENIC
X	11338829	X_11338829_SNP [dm3] X_11444796_SNP [dm6]	G	T	3.336e^-4	0.939	SYNONYMOUS_CODING Sk1 INTRON Evi5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8875338	3L_8875338_SNP [dm3] 3L_8882238_SNP [dm6]	G	A	3.338e^-4	0.939	INTRON dally
X	9486757	X_9486757_SNP [dm3] X_9592724_SNP [dm6]	G	T	3.342e^-4	0.939	INTERGENIC
2L	7400967	2L_7400967_SNP [dm3] 2L_7400967_SNP [dm6]	C	T	3.347e^-4	0.939	UPSTREAM CG5171 INTERGENIC
2L	14202885	2L_14202885_SNP [dm3] 2L_14202885_SNP [dm6]	G	C	3.348e^-4	0.939	INTRON Dyrk2
2L	1993813	2L_1993813_SNP [dm3] 2L_1993813_SNP [dm6]	A	G	3.361e^-4	0.939	INTERGENIC
3R	3466196	3R_3466196_SNP [dm3] 3R_7640474_SNP [dm6]	G	A	3.361e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	11213651	2L_11213651_SNP [dm3] 2L_11213651_SNP [dm6]	A	T	3.361e^-4	0.939	INTRON ab
3L	2130228	3L_2130228_SNP [dm3] 3L_2130228_SNP [dm6]	C	G	3.365e^-4	0.939	INTRON zormin
X	9485583	X_9485583_SNP [dm3] X_9591550_SNP [dm6]	A	T	3.365e^-4	0.939	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2982476	X_2982476_SNP [dm3] X_3088443_SNP [dm6]	A	G	3.366e^-4	0.939	INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20015581	3R_20015581_SNP [dm3] 3R_24189859_SNP [dm6]	G	A	3.367e^-4	0.939	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
X	20038315	X_20038315_SNP [dm3] X_20144282_SNP [dm6]	T	G	3.372e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_sens
2R	18553625	2R_18553625_SNP [dm3] 2R_22666120_SNP [dm6]	G	A	3.383e^-4	0.939	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2L	13103614	2L_13103614_SNP [dm3] 2L_13103614_SNP [dm6]	T	A	3.386e^-4	0.939	INTERGENIC
3L	14212451	3L_14212451_SNP [dm3] 3L_14219351_SNP [dm6]	C	A	3.389e^-4	0.939	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2103390	3L_2103390_SNP [dm3] 3L_2103390_SNP [dm6]	T	G	3.391e^-4	0.939	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10834334	2R_10834334_DEL [dm3] 2R_14946829_DEL [dm6]	GTAGGGTGTGCAT...	G	3.399e^-4	0.94	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8271140	2R_8271140_SNP [dm3] 2R_12383635_SNP [dm6]	C	T	3.413e^-4	0.94	UTR_5_PRIME CG8501 UPSTREAM CG8501	TF binding site mE1_TFBS_cad
2L	15144244	2L_15144244_SNP [dm3] 2L_15144244_SNP [dm6]	A	T	3.420e^-4	0.94	INTERGENIC
3R	13257947	3R_13257947_SNP [dm3] 3R_17432225_SNP [dm6]	G	A	3.425e^-4	0.94	INTRON CG5873
3L	5301080	3L_5301080_SNP [dm3] 3L_5307980_SNP [dm6]	T	C	3.440e^-4	0.94	INTERGENIC
2L	8492463	2L_8492463_INS [dm3] 2L_8492463_INS [dm6]	C	CC	3.444e^-4	0.94	UTR_3_PRIME Dh31
2L	8317413	2L_8317413_SNP [dm3] 2L_8317413_SNP [dm6]	A	G	3.449e^-4	0.94	DOWNSTREAM CG7806 INTRON mtsh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14212534	3L_14212534_SNP [dm3] 3L_14219434_SNP [dm6]	T	A	3.452e^-4	0.94	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12596016	3R_12596016_SNP [dm3] 3R_16770294_SNP [dm6]	T	C	3.453e^-4	0.94	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	18170553	3R_18170553_SNP [dm3] 3R_22344831_SNP [dm6]	C	A	3.460e^-4	0.94	INTERGENIC
3L	9059358	3L_9059358_SNP [dm3] 3L_9066258_SNP [dm6]	C	G	3.460e^-4	0.94	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	9486719	X_9486719_SNP [dm3] X_9592686_SNP [dm6]	A	T	3.463e^-4	0.94	INTERGENIC
X	5656033	X_5656033_SNP [dm3] X_5762000_SNP [dm6]	A	T	3.464e^-4	0.94	INTRON MAPk-Ak2
3R	27134437	3R_27134437_SNP [dm3] 3R_31308715_SNP [dm6]	A	G	3.468e^-4	0.94	INTERGENIC
3L	19365725	3L_19365725_SNP [dm3] 3L_19372625_SNP [dm6]	C	A	3.496e^-4	0.94	INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	5457471	2L_5457471_SNP [dm3] 2L_5457471_SNP [dm6]	T	A	3.500e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
2R	17647666	2R_17647666_SNP [dm3] 2R_21760161_SNP [dm6]	T	C	3.503e^-4	0.94	INTERGENIC
3L	14212393	3L_14212393_INS [dm3] 3L_14219293_INS [dm6]	A	GGT	3.508e^-4	0.94	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
3R	26815393	3R_26815393_SNP [dm3] 3R_30989671_SNP [dm6]	C	A	3.516e^-4	0.94	NON_SYNONYMOUS_CODING CG31008 INTRON 5-HT7
3L	18542176	3L_18542176_SNP [dm3] 3L_18549076_SNP [dm6]	A	C	3.516e^-4	0.94	INTERGENIC
3L	7229850	3L_7229850_SNP [dm3] 3L_7236750_SNP [dm6]	T	A	3.516e^-4	0.94	DOWNSTREAM CG14829 & 1 other INTERGENIC
3L	19360430	3L_19360430_SNP [dm3] 3L_19367330_SNP [dm6]	G	A	3.521e^-4	0.94	INTRON CG32206
3L	10890731	3L_10890731_SNP [dm3] 3L_10897631_SNP [dm6]	C	G	3.529e^-4	0.94	INTRON Aps
3R	3540454	3R_3540454_SNP [dm3] 3R_7714732_SNP [dm6]	T	C	3.542e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20233429	2R_20233429_DEL [dm3] 2R_24345906_DEL [dm6]	TTA	T	3.552e^-4	0.94	INTRON bs
3L	2130300	3L_2130300_SNP [dm3] 3L_2130300_SNP [dm6]	G	A	3.554e^-4	0.94	INTRON zormin
3L	18536957	3L_18536957_SNP [dm3] 3L_18543857_SNP [dm6]	T	C	3.567e^-4	0.94	INTERGENIC
3L	16885836	3L_16885836_SNP [dm3] 3L_16892736_SNP [dm6]	A	G	3.571e^-4	0.94	INTRON Lmpt
3L	18539331	3L_18539331_SNP [dm3] 3L_18546231_SNP [dm6]	T	A	3.599e^-4	0.94	INTERGENIC
2R	16341700	2R_16341700_SNP [dm3] 2R_20454195_SNP [dm6]	G	A	3.601e^-4	0.94	INTRON CG12484
2R	12932842	2R_12932842_SNP [dm3] 2R_17045337_SNP [dm6]	C	G	3.603e^-4	0.94	SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_sens
2L	12972089	2L_12972089_SNP [dm3] 2L_12972089_SNP [dm6]	G	T	3.611e^-4	0.94	INTERGENIC
3L	11597470	3L_11597470_SNP [dm3] 3L_11604370_SNP [dm6]	A	G	3.615e^-4	0.94	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11581919	2R_11581919_SNP [dm3] 2R_15694414_SNP [dm6]	C	G	3.623e^-4	0.94	NON_SYNONYMOUS_CODING CG33460 UPSTREAM CR44372 & 1 other DOWNSTREAM CG30087
X	16768782	X_16768782_DEL [dm3] X_16874749_DEL [dm6]	TT	T	3.626e^-4	0.94	UTR_5_PRIME CG13003 INTRON CG13003
3L	10874670	3L_10874670_SNP [dm3] 3L_10881570_SNP [dm6]	C	T	3.627e^-4	0.94	NON_SYNONYMOUS_CODING CG6409	TF binding site mE1_TFBS_chinmo
3L	16953872	3L_16953872_SNP [dm3] 3L_16960772_SNP [dm6]	C	A	3.627e^-4	0.94	INTRON Nc73EF
3L	17319720	3L_17319720_SNP [dm3] 3L_17326620_SNP [dm6]	C	T	3.633e^-4	0.94	INTERGENIC
3R	25535465	3R_25535465_SNP [dm3] 3R_29709743_SNP [dm6]	T	A	3.638e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9813476	X_9813476_SNP [dm3] X_9919443_SNP [dm6]	G	A	3.656e^-4	0.94	INTERGENIC
3L	9628566	3L_9628566_SNP [dm3] 3L_9635466_SNP [dm6]	A	T	3.660e^-4	0.94	INTRON fry
X	3864587	X_3864587_SNP [dm3] X_3970554_SNP [dm6]	T	C	3.668e^-4	0.94	SYNONYMOUS_CODING CG6414 EXON CR45481
2L	9854642	2L_9854642_SNP [dm3] 2L_9854642_SNP [dm6]	C	G	3.668e^-4	0.94	INTRON nAChRalpha6
2L	8808597	2L_8808597_SNP [dm3] 2L_8808597_SNP [dm6]	T	G	3.668e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	19166588	2L_19166588_DEL [dm3] 2L_19166588_DEL [dm6]	CACAGGA	C	3.681e^-4	0.94	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	12746214	2L_12746214_SNP [dm3] 2L_12746214_SNP [dm6]	C	A	3.683e^-4	0.94	INTERGENIC
3R	3294583	3R_3294583_SNP [dm3] 3R_7468861_SNP [dm6]	G	A	3.683e^-4	0.94	UPSTREAM CR44934 INTERGENIC
2L	17895132	2L_17895132_SNP [dm3] 2L_17895132_SNP [dm6]	C	A	3.683e^-4	0.94	DOWNSTREAM CR43420 INTERGENIC
2L	8808583	2L_8808583_SNP [dm3] 2L_8808583_SNP [dm6]	C	G	3.695e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	9485585	X_9485585_SNP [dm3] X_9591552_SNP [dm6]	T	C	3.702e^-4	0.94	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16655332	3L_16655332_SNP [dm3] 3L_16662232_SNP [dm6]	G	A	3.705e^-4	0.94	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3154983	3L_3154983_SNP [dm3] 3L_3154983_SNP [dm6]	T	G	3.707e^-4	0.94	UTR_3_PRIME BtbVII DOWNSTREAM BtbVII INTRON BtbVII
3L	18539356	3L_18539356_DEL [dm3] 3L_18546256_DEL [dm6]	ATCAAT	A	3.710e^-4	0.94	INTERGENIC
3L	8944660	3L_8944660_SNP [dm3] 3L_8951560_SNP [dm6]	C	G	3.712e^-4	0.94	INTRON orb2 & 1 other
3R	2341465	3R_2341465_INS [dm3] 3R_6515743_INS [dm6]	C	CCT	3.712e^-4	0.94	INTERGENIC
3L	14631874	3L_14631874_SNP [dm3] 3L_14638774_SNP [dm6]	T	C	3.713e^-4	0.94	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	2457246	3L_2457246_SNP [dm3] 3L_2457246_SNP [dm6]	G	C	3.717e^-4	0.94	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25432481	3R_25432481_SNP [dm3] 3R_29606759_SNP [dm6]	T	A	3.722e^-4	0.94	INTRON alph
X	14411220	X_14411220_SNP [dm3] X_14517187_SNP [dm6]	A	C	3.722e^-4	0.94	UPSTREAM CR44110 INTERGENIC
2L	14198127	2L_14198127_SNP [dm3] 2L_14198127_SNP [dm6]	G	A	3.724e^-4	0.94	UPSTREAM Dyrk2 INTRON Dyrk2
X	2500746	X_2500746_DEL [dm3] X_2606713_DEL [dm6]	TCTGTT	T	3.730e^-4	0.94	UTR_3_PRIME Zw10 & 1 other
2L	8008324	2L_8008324_DEL [dm3] 2L_8008324_DEL [dm6]	TGCTCA	T	3.737e^-4	0.94	UTR_3_PRIME CG12560
2L	13862747	2L_13862747_SNP [dm3] 2L_13862747_SNP [dm6]	A	G	3.738e^-4	0.94	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	12386851	3R_12386851_SNP [dm3] 3R_16561129_SNP [dm6]	T	A	3.744e^-4	0.94	INTRON CG42342
2L	19851275	2L_19851275_SNP [dm3] 2L_19851275_SNP [dm6]	G	T	3.746e^-4	0.94	INTRON sick
2L	3967462	2L_3967462_SNP [dm3] 2L_3967462_SNP [dm6]	A	G	3.749e^-4	0.94	INTRON fred
2L	8492483	2L_8492483_SNP [dm3] 2L_8492483_SNP [dm6]	T	G	3.777e^-4	0.94	UTR_3_PRIME Dh31
3L	3292308	3L_3292308_SNP [dm3] 3L_3292308_SNP [dm6]	T	C	3.781e^-4	0.94	INTRON CG12009
2R	17838734	2R_17838734_SNP [dm3] 2R_21951229_SNP [dm6]	C	A	3.802e^-4	0.94	UPSTREAM CG13488 INTERGENIC
2L	15779370	2L_15779370_DEL [dm3] 2L_15779370_DEL [dm6]	TCAT	T	3.803e^-4	0.94	INTERGENIC
3L	19313772	3L_19313772_SNP [dm3] 3L_19320672_SNP [dm6]	G	T	3.812e^-4	0.94	INTRON pip
2L	8315679	2L_8315679_SNP [dm3] 2L_8315679_SNP [dm6]	C	T	3.818e^-4	0.94	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_sens
X	10332532	X_10332532_SNP [dm3] X_10438499_SNP [dm6]	A	G	3.820e^-4	0.94	INTRON CG32683
3L	18472554	3L_18472554_SNP [dm3] 3L_18479454_SNP [dm6]	G	T	3.829e^-4	0.94	DOWNSTREAM CR44673 INTERGENIC
3L	18539347	3L_18539347_SNP [dm3] 3L_18546247_SNP [dm6]	A	G	3.829e^-4	0.94	INTERGENIC
3R	25042873	3R_25042873_SNP [dm3] 3R_29217151_SNP [dm6]	C	A	3.833e^-4	0.94	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
3L	14631873	3L_14631873_SNP [dm3] 3L_14638773_SNP [dm6]	C	A	3.841e^-4	0.94	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	4850973	2L_4850973_SNP [dm3] 2L_4850973_SNP [dm6]	C	T	3.855e^-4	0.94	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	9230647	X_9230647_SNP [dm3] X_9336614_SNP [dm6]	C	T	3.856e^-4	0.94	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17795483	3R_17795483_SNP [dm3] 3R_21969761_SNP [dm6]	C	T	3.856e^-4	0.94	INTRON Eip93F
3R	24057842	3R_24057842_SNP [dm3] 3R_28232120_SNP [dm6]	C	A	3.860e^-4	0.94	INTRON CG34354
3R	22991699	3R_22991699_SNP [dm3] 3R_27165977_SNP [dm6]	C	A	3.862e^-4	0.94	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11581503	3R_11581503_SNP [dm3] 3R_15755781_SNP [dm6]	G	A	3.866e^-4	0.94	INTERGENIC
2L	8808538	2L_8808538_SNP [dm3] 2L_8808538_SNP [dm6]	T	C	3.866e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	19228710	3L_19228710_SNP [dm3] 3L_19235610_SNP [dm6]	A	C	3.873e^-4	0.94	UPSTREAM CG33647 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12932890	2R_12932890_SNP [dm3] 2R_17045385_SNP [dm6]	A	G	3.875e^-4	0.94	SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_sens
X	4812074	X_4812074_SNP [dm3] X_4918041_SNP [dm6]	A	C	3.879e^-4	0.94	UPSTREAM CG6903 INTRON CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_Ubx
2L	9972537	2L_9972537_SNP [dm3] 2L_9972537_SNP [dm6]	C	G	3.879e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20015717	3R_20015717_SNP [dm3] 3R_24189995_SNP [dm6]	G	T	3.887e^-4	0.94	SYNONYMOUS_CODING jnj
3R	13278988	3R_13278988_SNP [dm3] 3R_17453266_SNP [dm6]	T	C	3.888e^-4	0.94	INTERGENIC
2L	17197743	2L_17197743_SNP [dm3] 2L_17197743_SNP [dm6]	A	C	3.888e^-4	0.94	INTRON beat-IIIc
2R	7892238	2R_7892238_SNP [dm3] 2R_12004733_SNP [dm6]	T	A	3.894e^-4	0.94	INTRON otk
X	17190725	X_17190725_SNP [dm3] X_17296692_SNP [dm6]	A	G	3.896e^-4	0.94	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	7324140	2R_7324140_SNP [dm3] 2R_11436635_SNP [dm6]	A	T	3.897e^-4	0.94	INTRON CG7777
2R	9959029	2R_9959029_SNP [dm3] 2R_14071524_SNP [dm6]	T	A	3.903e^-4	0.94	INTRON Prosap
2L	12094466	2L_12094466_SNP [dm3] 2L_12094466_SNP [dm6]	A	C	3.907e^-4	0.94	SYNONYMOUS_CODING Pex19 DOWNSTREAM CG6712	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16746208	2R_16746208_SNP [dm3] 2R_20858703_SNP [dm6]	A	T	3.912e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4525260	2R_4525260_SNP [dm3] 2R_8637755_SNP [dm6]	A	G	3.922e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18543158	3L_18543158_SNP [dm3] 3L_18550058_SNP [dm6]	T	C	3.924e^-4	0.94	INTERGENIC
3R	11581489	3R_11581489_SNP [dm3] 3R_15755767_SNP [dm6]	G	C	3.932e^-4	0.94	INTERGENIC
3L	1693699	3L_1693699_SNP [dm3] 3L_1693699_SNP [dm6]	A	G	3.935e^-4	0.94	UPSTREAM CG12011 INTRON CG7991
3L	11033603	3L_11033603_SNP [dm3] 3L_11040503_SNP [dm6]	C	T	3.936e^-4	0.94	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
3L	19345828	3L_19345828_SNP [dm3] 3L_19352728_SNP [dm6]	A	T	3.938e^-4	0.94	INTRON CG32206
3R	25438768	3R_25438768_SNP [dm3] 3R_29613046_SNP [dm6]	A	G	3.940e^-4	0.94	INTRON alph
2R	17524231	2R_17524231_SNP [dm3] 2R_21636726_SNP [dm6]	G	A	3.942e^-4	0.94	NON_SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17768863	3L_17768863_SNP [dm3] 3L_17775763_SNP [dm6]	T	C	3.960e^-4	0.94	INTERGENIC
2L	19011676	2L_19011676_INS [dm3] 2L_19011676_INS [dm6]	T	TT	3.960e^-4	0.94	UPSTREAM CR45292 DOWNSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20041582	2L_20041582_SNP [dm3] 2L_20041582_SNP [dm6]	G	T	3.967e^-4	0.94	INTRON sNPF
3R	11581669	3R_11581669_SNP [dm3] 3R_15755947_SNP [dm6]	A	G	3.968e^-4	0.94	INTERGENIC
2L	6406929	2L_6406929_SNP [dm3] 2L_6406929_SNP [dm6]	G	A	3.970e^-4	0.94	INTRON CG42368
2L	17282041	2L_17282041_SNP [dm3] 2L_17282041_SNP [dm6]	A	T	3.972e^-4	0.94	INTERGENIC
X	3811539	X_3811539_DEL [dm3] X_3917506_DEL [dm6]	AGGATAAACAAAA...	A	3.981e^-4	0.94	INTRON CG42541
2L	1399218	2L_1399218_SNP [dm3] 2L_1399218_SNP [dm6]	G	T	3.981e^-4	0.94	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14212395	3L_14212395_SNP [dm3] 3L_14219295_SNP [dm6]	C	G	3.986e^-4	0.94	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
3R	2269654	3R_2269654_SNP [dm3] 3R_6443932_SNP [dm6]	C	A	3.988e^-4	0.94	NON_SYNONYMOUS_CODING gpp
3L	13934687	3L_13934687_SNP [dm3] 3L_13941587_SNP [dm6]	A	C	3.993e^-4	0.94	INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	5262978	X_5262978_SNP [dm3] X_5368945_SNP [dm6]	C	T	4.005e^-4	0.94	INTRON SK
3R	23199329	3R_23199329_SNP [dm3] 3R_27373607_SNP [dm6]	G	A	4.010e^-4	0.94	INTERGENIC
2L	14377483	2L_14377483_SNP [dm3] 2L_14377483_SNP [dm6]	G	C	4.014e^-4	0.94	DOWNSTREAM ppk INTERGENIC
3L	7231684	3L_7231684_SNP [dm3] 3L_7238584_SNP [dm6]	C	T	4.015e^-4	0.94	UTR_5_PRIME BHD UPSTREAM CG14829	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10942441	X_10942441_SNP [dm3] X_11048408_SNP [dm6]	C	G	4.019e^-4	0.94	INTRON CG11160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12181266	X_12181266_SNP [dm3] X_12287233_SNP [dm6]	A	G	4.023e^-4	0.94	INTRON Ten-a
2R	18971838	2R_18971838_DEL [dm3] 2R_23084315_DEL [dm6]	GG	G	4.027e^-4	0.94	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	19850567	2L_19850567_SNP [dm3] 2L_19850567_SNP [dm6]	G	A	4.033e^-4	0.94	INTRON sick
2L	2401381	2L_2401381_SNP [dm3] 2L_2401381_SNP [dm6]	G	A	4.036e^-4	0.94	INTRON VGlut
X	5012861	X_5012861_DEL [dm3] X_5118828_DEL [dm6]	AA	A	4.057e^-4	0.94	INTRON rg & 1 other
2L	4403487	2L_4403487_SNP [dm3] 2L_4403487_SNP [dm6]	A	T	4.058e^-4	0.94	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16379391	2L_16379391_SNP [dm3] 2L_16379391_SNP [dm6]	T	C	4.061e^-4	0.94	INTERGENIC
2L	8126330	2L_8126330_SNP [dm3] 2L_8126330_SNP [dm6]	C	T	4.063e^-4	0.94	NON_SYNONYMOUS_CODING CG12375 UPSTREAM CG8668 DOWNSTREAM CG8673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11051076	3L_11051076_SNP [dm3] 3L_11057976_SNP [dm6]	G	A	4.072e^-4	0.94	INTRON CG7888	TF binding site mE1_TFBS_cad
3L	1073919	3L_1073919_SNP [dm3] 3L_1073919_SNP [dm6]	C	A	4.074e^-4	0.94	INTRON bab1
2L	12491473	2L_12491473_SNP [dm3] 2L_12491473_SNP [dm6]	A	T	4.074e^-4	0.94	INTRON bun
X	1212261	X_1212261_SNP [dm3] X_1318228_SNP [dm6]	G	C	4.078e^-4	0.94	INTRON DAAM	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10308699	X_10308699_SNP [dm3] X_10414666_SNP [dm6]	T	G	4.083e^-4	0.94	INTRON CG32683
2R	12818830	2R_12818830_SNP [dm3] 2R_16931325_SNP [dm6]	G	A	4.093e^-4	0.94	INTRON Pkc53E
3R	25535521	3R_25535521_SNP [dm3] 3R_29709799_SNP [dm6]	C	T	4.094e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14106429	2L_14106429_SNP [dm3] 2L_14106429_SNP [dm6]	G	A	4.095e^-4	0.94	SYNONYMOUS_CODING CG16879
3R	891200	3R_891200_SNP [dm3] 3R_5065478_SNP [dm6]	C	T	4.100e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17547797	2R_17547797_SNP [dm3] 2R_21660292_SNP [dm6]	T	C	4.113e^-4	0.94	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7429703	2L_7429703_SNP [dm3] 2L_7429703_SNP [dm6]	G	T	4.122e^-4	0.94	DOWNSTREAM CG5958 INTRON CG5261
X	9485655	X_9485655_SNP [dm3] X_9591622_SNP [dm6]	C	T	4.123e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25535469	3R_25535469_INS [dm3] 3R_29709747_INS [dm6]	A	AGA	4.126e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15797807	2L_15797807_SNP [dm3] 2L_15797807_SNP [dm6]	C	T	4.128e^-4	0.94	INTERGENIC
2R	6046521	2R_6046521_SNP [dm3] 2R_10159016_SNP [dm6]	T	C	4.130e^-4	0.94	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	3677622	2R_3677622_SNP [dm3] 2R_7790117_SNP [dm6]	G	C	4.130e^-4	0.94	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
3R	10683350	3R_10683350_SNP [dm3] 3R_14857628_SNP [dm6]	A	G	4.131e^-4	0.94	INTRON btsz
2L	3372282	2L_3372282_SNP [dm3] 2L_3372282_SNP [dm6]	A	C	4.132e^-4	0.94	UPSTREAM CG34394 INTRON CG34394
2R	8266928	2R_8266928_SNP [dm3] 2R_12379423_SNP [dm6]	A	T	4.146e^-4	0.942	DOWNSTREAM CG13155 & 1 other INTERGENIC
2R	14363162	2R_14363162_SNP [dm3] 2R_18475657_SNP [dm6]	C	A	4.152e^-4	0.942	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_HSA
2R	2141498	2R_2141498_DEL [dm3] 2R_6253993_DEL [dm6]	AT	A	4.157e^-4	0.942	INTRON Pld
2R	3673584	2R_3673584_SNP [dm3] 2R_7786079_SNP [dm6]	C	A	4.174e^-4	0.944	UTR_5_PRIME CanB2 UPSTREAM mir-4980 DOWNSTREAM CR45108	TF binding site BDTNP1_TFBS_twi
2R	11581982	2R_11581982_SNP [dm3] 2R_15694477_SNP [dm6]	T	C	4.182e^-4	0.944	SPLICE_SITE_REGION CG33460 SYNONYMOUS_CODING CG33460 UPSTREAM CR44372 & 1 other DOWNSTREAM CG30087
X	4812126	X_4812126_SNP [dm3] X_4918093_SNP [dm6]	C	A	4.183e^-4	0.944	UPSTREAM CG6903 INTRON CG4041	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_Ubx
2L	4796837	2L_4796837_SNP [dm3] 2L_4796837_SNP [dm6]	A	G	4.187e^-4	0.944	UTR_3_PRIME Clect27 DOWNSTREAM CG3294
3L	18498093	3L_18498093_DEL [dm3] 3L_18504993_DEL [dm6]	TAT	T	4.189e^-4	0.944	INTERGENIC
3R	3465836	3R_3465836_SNP [dm3] 3R_7640114_SNP [dm6]	G	T	4.195e^-4	0.944	UPSTREAM CG34127 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2137155	3L_2137155_SNP [dm3] 3L_2137155_SNP [dm6]	A	G	4.217e^-4	0.944	INTRON zormin
3L	15351726	3L_15351726_INS [dm3] 3L_15358626_INS [dm6]	T	AGATC	4.219e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7494156	X_7494156_DEL [dm3] X_7600123_DEL [dm6]	ATAATTA	A	4.219e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs
3L	9610625	3L_9610625_SNP [dm3] 3L_9617525_SNP [dm6]	G	T	4.226e^-4	0.944	INTRON LanB2
3L	937497	3L_937497_SNP [dm3] 3L_937497_SNP [dm6]	T	C	4.227e^-4	0.944	INTRON Glut1
3L	16655276	3L_16655276_SNP [dm3] 3L_16662176_SNP [dm6]	A	T	4.230e^-4	0.944	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9595032	2L_9595032_SNP [dm3] 2L_9595032_SNP [dm6]	T	C	4.231e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs
2L	14451447	2L_14451447_SNP [dm3] 2L_14451447_SNP [dm6]	T	C	4.249e^-4	0.945	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	892792	3L_892792_SNP [dm3] 3L_892792_SNP [dm6]	C	A	4.255e^-4	0.945	UTR_3_PRIME CG32479
2L	7400940	2L_7400940_SNP [dm3] 2L_7400940_SNP [dm6]	G	C	4.255e^-4	0.945	UPSTREAM CG5171 INTERGENIC
X	16871206	X_16871206_SNP [dm3] X_16977173_SNP [dm6]	T	C	4.256e^-4	0.945	INTRON CG45002
3R	22732477	3R_22732477_SNP [dm3] 3R_26906755_SNP [dm6]	A	G	4.272e^-4	0.947	INTRON T48	regulatory region REDfly_CRMs
X	8947046	X_8947046_SNP [dm3] X_9053013_SNP [dm6]	T	C	4.278e^-4	0.948	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14418591	2L_14418591_SNP [dm3] 2L_14418591_SNP [dm6]	A	G	4.298e^-4	0.951	INTERGENIC
2L	17544876	2L_17544876_INS [dm3] 2L_17544876_INS [dm6]	T	TGTGGGT	4.319e^-4	0.953	INTERGENIC
3L	19573035	3L_19573035_SNP [dm3] 3L_19579935_SNP [dm6]	C	T	4.320e^-4	0.953	INTRON Shal
3L	10875018	3L_10875018_SNP [dm3] 3L_10881918_SNP [dm6]	A	C	4.323e^-4	0.953	UPSTREAM CG7949 INTRON CG6409
X	20313342	X_20313342_SNP [dm3] X_20442315_SNP [dm6]	C	T	4.338e^-4	0.954	SYNONYMOUS_CODING CG1695	TF binding site mE1_TFBS_chinmo
3L	10901963	3L_10901963_INS [dm3] 3L_10908863_INS [dm6]	CA	TTT	4.345e^-4	0.954	INTERGENIC
3L	10288053	3L_10288053_SNP [dm3] 3L_10294953_SNP [dm6]	A	G	4.355e^-4	0.954	INTERGENIC
X	2982474	X_2982474_SNP [dm3] X_3088441_SNP [dm6]	A	G	4.357e^-4	0.954	INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19406135	3R_19406135_SNP [dm3] 3R_23580413_SNP [dm6]	T	C	4.359e^-4	0.954	DOWNSTREAM beat-IV INTERGENIC	insulator Insulator_Class_II.mE01
3L	8081792	3L_8081792_SNP [dm3] 3L_8088692_SNP [dm6]	C	T	4.363e^-4	0.954	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13018845	2R_13018845_SNP [dm3] 2R_17131340_SNP [dm6]	T	G	4.368e^-4	0.954	EXON CR45273
X	19279833	X_19279833_SNP [dm3] X_19385800_SNP [dm6]	A	C	4.371e^-4	0.954	INTRON kek5
X	5262789	X_5262789_SNP [dm3] X_5368756_SNP [dm6]	T	G	4.376e^-4	0.954	INTRON SK
2R	7324193	2R_7324193_DEL [dm3] 2R_11436688_DEL [dm6]	TAATTTAAGTTAAGCAA...	T	4.377e^-4	0.954	INTRON CG7777
3L	20048197	3L_20048197_SNP [dm3] 3L_20055097_SNP [dm6]	C	T	4.383e^-4	0.954	INTERGENIC
3L	13827904	3L_13827904_SNP [dm3] 3L_13834804_SNP [dm6]	G	T	4.386e^-4	0.954	INTERGENIC
2L	8316379	2L_8316379_SNP [dm3] 2L_8316379_SNP [dm6]	C	T	4.398e^-4	0.955	SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
2L	17414672	2L_17414672_SNP [dm3] 2L_17414672_SNP [dm6]	T	C	4.400e^-4	0.955	DOWNSTREAM Dif INTRON Dif
2L	14800978	2L_14800978_SNP [dm3] 2L_14800978_SNP [dm6]	T	A	4.408e^-4	0.955	INTERGENIC
3L	10874979	3L_10874979_SNP [dm3] 3L_10881879_SNP [dm6]	C	T	4.413e^-4	0.955	INTRON CG6409
2R	7324011	2R_7324011_SNP [dm3] 2R_11436506_SNP [dm6]	C	A	4.430e^-4	0.957	INTRON CG7777
X	2982459	X_2982459_SNP [dm3] X_3088426_SNP [dm6]	C	T	4.433e^-4	0.957	INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	658412	3L_658412_SNP [dm3] 3L_658412_SNP [dm6]	A	G	4.454e^-4	0.96	DOWNSTREAM Rev1 INTERGENIC
2L	1185782	2L_1185782_SNP [dm3] 2L_1185782_SNP [dm6]	C	T	4.470e^-4	0.96	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	1211793	X_1211793_SNP [dm3] X_1317760_SNP [dm6]	A	G	4.478e^-4	0.96	INTRON DAAM	TF binding site BDTNP1_TFBS_twi
X	1211872	X_1211872_SNP [dm3] X_1317839_SNP [dm6]	G	A	4.478e^-4	0.96	INTRON DAAM	TF binding site BDTNP1_TFBS_twi
3L	11443644	3L_11443644_SNP [dm3] 3L_11450544_SNP [dm6]	A	G	4.485e^-4	0.96	INTERGENIC
2R	2710909	2R_2710909_SNP [dm3] 2R_6823404_SNP [dm6]	G	A	4.487e^-4	0.96	UPSTREAM CR44442 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7400990	2L_7400990_SNP [dm3] 2L_7400990_SNP [dm6]	G	A	4.496e^-4	0.96	UPSTREAM CG5171 INTERGENIC
3R	24515399	3R_24515399_SNP [dm3] 3R_28689677_SNP [dm6]	A	C	4.503e^-4	0.96	UTR_5_PRIME CG9990 INTRON CG9990
X	4621535	X_4621535_SNP [dm3] X_4727502_SNP [dm6]	T	G	4.505e^-4	0.96	SYNONYMOUS_CODING Proc-R
3L	19272336	3L_19272336_SNP [dm3] 3L_19279236_SNP [dm6]	A	G	4.506e^-4	0.96	DOWNSTREAM CG14089 INTRON CG14086
X	85505	X_85505_SNP [dm3] X_188501_SNP [dm6]	T	A	4.508e^-4	0.96	INTRON tyn
3R	2027714	3R_2027714_SNP [dm3] 3R_6201992_SNP [dm6]	G	A	4.512e^-4	0.96	INTRON Osi24	TF binding site BDTNP1_TFBS_da
3L	19272225	3L_19272225_SNP [dm3] 3L_19279125_SNP [dm6]	T	A	4.515e^-4	0.96	DOWNSTREAM CG14089 INTRON CG14086
3L	13648577	3L_13648577_SNP [dm3] 3L_13655477_SNP [dm6]	T	G	4.529e^-4	0.962	INTRON bru-3
X	12379838	X_12379838_SNP [dm3] X_12485805_SNP [dm6]	A	T	4.534e^-4	0.962	INTERGENIC
2R	12132388	2R_12132388_SNP [dm3] 2R_16244883_SNP [dm6]	A	G	4.544e^-4	0.963	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14900133	3R_14900133_SNP [dm3] 3R_19074411_SNP [dm6]	A	T	4.546e^-4	0.963	INTRON cdi
2L	14469605	2L_14469605_SNP [dm3] 2L_14469605_SNP [dm6]	T	C	4.550e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15870953	3L_15870953_SNP [dm3] 3L_15877853_SNP [dm6]	T	G	4.562e^-4	0.964	INTRON pHCl
3L	10872308	3L_10872308_SNP [dm3] 3L_10879208_SNP [dm6]	A	C	4.595e^-4	0.97	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6804779	3L_6804779_SNP [dm3] 3L_6811679_SNP [dm6]	T	A	4.601e^-4	0.97	INTERGENIC
3L	1307066	3L_1307066_SNP [dm3] 3L_1307066_SNP [dm6]	T	C	4.609e^-4	0.971	NON_SYNONYMOUS_CODING CG2277 UTR_5_PRIME CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13753143	3R_13753143_SNP [dm3] 3R_17927421_SNP [dm6]	A	T	4.625e^-4	0.973	INTRON cpo
3L	15593886	3L_15593886_SNP [dm3] 3L_15600786_SNP [dm6]	C	T	4.635e^-4	0.973	SYNONYMOUS_CODING RhoGAP71E
2L	14632221	2L_14632221_SNP [dm3] 2L_14632221_SNP [dm6]	C	T	4.635e^-4	0.973	INTRON osp
X	9040792	X_9040792_SNP [dm3] X_9146759_SNP [dm6]	G	A	4.644e^-4	0.973	NON_SYNONYMOUS_CODING CG7065	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14418594	2L_14418594_SNP [dm3] 2L_14418594_SNP [dm6]	A	C	4.649e^-4	0.973	INTERGENIC
3L	18504432	3L_18504432_SNP [dm3] 3L_18511332_SNP [dm6]	C	T	4.652e^-4	0.973	INTERGENIC
3L	16655430	3L_16655430_SNP [dm3] 3L_16662330_SNP [dm6]	T	C	4.665e^-4	0.975	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	14414832	2L_14414832_SNP [dm3] 2L_14414832_SNP [dm6]	G	A	4.671e^-4	0.975	INTERGENIC
2L	7699795	2L_7699795_SNP [dm3] 2L_7699795_SNP [dm6]	T	C	4.681e^-4	0.976	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
2R	6055182	2R_6055182_SNP [dm3] 2R_10167677_SNP [dm6]	C	G	4.691e^-4	0.976	INTRON KCNQ
3L	9059401	3L_9059401_SNP [dm3] 3L_9066301_SNP [dm6]	G	A	4.693e^-4	0.976	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17545778	2L_17545778_SNP [dm3] 2L_17545778_SNP [dm6]	T	G	4.722e^-4	0.979	INTERGENIC
3L	5484062	3L_5484062_DEL [dm3] 3L_5490962_DEL [dm6]	ATA	A	4.723e^-4	0.979	INTERGENIC
2L	4451938	2L_4451938_SNP [dm3] 2L_4451938_SNP [dm6]	T	C	4.724e^-4	0.979	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20870226	3R_20870226_SNP [dm3] 3R_25044504_SNP [dm6]	G	A	4.727e^-4	0.979	INTRON 5PtaseI	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5976691	2R_5976691_SNP [dm3] 2R_10089186_SNP [dm6]	T	A	4.739e^-4	0.979	INTRON CG2269
X	9485644	X_9485644_SNP [dm3] X_9591611_SNP [dm6]	G	A	4.747e^-4	0.979	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_inv
2L	14452758	2L_14452758_SNP [dm3] 2L_14452758_SNP [dm6]	A	T	4.747e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	15910335	3R_15910335_SNP [dm3] 3R_20084613_SNP [dm6]	A	T	4.758e^-4	0.979	INTERGENIC
3L	12248318	3L_12248318_SNP [dm3] 3L_12255218_SNP [dm6]	C	T	4.761e^-4	0.979	INTRON app
X	7494137	X_7494137_SNP [dm3] X_7600104_SNP [dm6]	G	C	4.766e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
X	5262872	X_5262872_SNP [dm3] X_5368839_SNP [dm6]	G	A	4.779e^-4	0.979	INTRON SK
X	5347429	X_5347429_INS [dm3] X_5453396_INS [dm6]	C	CGGA	4.790e^-4	0.979	INTRON SPR
3L	6888971	3L_6888971_SNP [dm3] 3L_6895871_SNP [dm6]	G	A	4.792e^-4	0.979	INTERGENIC
X	4812158	X_4812158_SNP [dm3] X_4918125_SNP [dm6]	T	C	4.798e^-4	0.979	SYNONYMOUS_CODING CG4041 UPSTREAM CG6903	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24100234	3R_24100234_SNP [dm3] 3R_28274512_SNP [dm6]	A	T	4.806e^-4	0.979	INTERGENIC
3R	24100236	3R_24100236_SNP [dm3] 3R_28274514_SNP [dm6]	A	T	4.806e^-4	0.979	INTERGENIC
2L	825846	2L_825846_SNP [dm3] 2L_825846_SNP [dm6]	G	A	4.809e^-4	0.979	UTR_5_PRIME CG3862 UPSTREAM dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14423090	2L_14423090_SNP [dm3] 2L_14423090_SNP [dm6]	T	A	4.810e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9632069	3L_9632069_SNP [dm3] 3L_9638969_SNP [dm6]	T	A	4.815e^-4	0.979	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9687736	3L_9687736_SNP [dm3] 3L_9694636_SNP [dm6]	T	C	4.818e^-4	0.979	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	594571	3L_594571_SNP [dm3] 3L_594571_SNP [dm6]	C	T	4.821e^-4	0.979	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14473131	2L_14473131_SNP [dm3] 2L_14473131_SNP [dm6]	A	T	4.832e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	21329168	2L_21329168_SNP [dm3] 2L_21329168_SNP [dm6]	C	T	4.844e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10901972	3L_10901972_MNP [dm3] 3L_10908872_MNP [dm6]	GGCA	TTTT	4.845e^-4	0.979	INTERGENIC
3L	2107251	3L_2107251_SNP [dm3] 3L_2107251_SNP [dm6]	G	T	4.851e^-4	0.979	INTRON sls	TF binding site BDTNP1_TFBS_dl
2R	12076420	2R_12076420_SNP [dm3] 2R_16188915_SNP [dm6]	G	A	4.873e^-4	0.979	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13672746	X_13672746_SNP [dm3] X_13778713_SNP [dm6]	T	C	4.874e^-4	0.979	UTR_3_PRIME rdgB	TF binding site mE1_TFBS_zfh1
2L	12491471	2L_12491471_SNP [dm3] 2L_12491471_SNP [dm6]	C	T	4.881e^-4	0.979	INTRON bun
3L	19343643	3L_19343643_SNP [dm3] 3L_19350543_SNP [dm6]	A	G	4.909e^-4	0.979	SYNONYMOUS_CODING CG32206	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2785235	2R_2785235_SNP [dm3] 2R_6897730_SNP [dm6]	A	G	4.915e^-4	0.979	INTRON CG30158
2L	5536541	2L_5536541_SNP [dm3] 2L_5536541_SNP [dm6]	T	C	4.917e^-4	0.979	DOWNSTREAM CG14015 & 1 other INTRON tomb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8621951	3L_8621951_SNP [dm3] 3L_8628851_SNP [dm6]	G	A	4.927e^-4	0.979	INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	2982463	X_2982463_SNP [dm3] X_3088430_SNP [dm6]	C	A	4.931e^-4	0.979	INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14575857	X_14575857_MNP [dm3] X_14681824_MNP [dm6]	GAC	AGT	4.932e^-4	0.979	DOWNSTREAM CG5321 INTERGENIC
3R	12845407	3R_12845407_SNP [dm3] 3R_17019685_SNP [dm6]	G	T	4.937e^-4	0.979	NON_SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10027874	X_10027874_SNP [dm3] X_10133841_SNP [dm6]	A	T	4.956e^-4	0.979	INTRON CR44894 & 1 other
3R	15669845	3R_15669845_SNP [dm3] 3R_19844123_SNP [dm6]	C	A	4.959e^-4	0.979	INTERGENIC
3L	11051780	3L_11051780_SNP [dm3] 3L_11058680_SNP [dm6]	T	A	4.968e^-4	0.979	DOWNSTREAM CG6321 INTRON CG7888	TF binding site mE1_TFBS_cad
2R	9328186	2R_9328186_SNP [dm3] 2R_13440681_SNP [dm6]	A	G	4.968e^-4	0.979	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
3R	12845493	3R_12845493_SNP [dm3] 3R_17019771_SNP [dm6]	C	T	4.974e^-4	0.979	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1556197	X_1556197_DEL [dm3] X_1662164_DEL [dm6]	TT	T	4.985e^-4	0.979	UTR_3_PRIME br INTRON Mur2B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7400960	2L_7400960_SNP [dm3] 2L_7400960_SNP [dm6]	C	A	4.990e^-4	0.979	UPSTREAM CG5171 INTERGENIC
3R	23681188	3R_23681188_SNP [dm3] 3R_27855466_SNP [dm6]	G	A	4.993e^-4	0.979	INTRON CG34353
2R	16226491	2R_16226491_SNP [dm3] 2R_20338986_SNP [dm6]	A	G	4.994e^-4	0.979	INTERGENIC
2R	2716776	2R_2716776_SNP [dm3] 2R_6829271_SNP [dm6]	A	G	4.994e^-4	0.979	INTRON CG15236	TF binding site mE1_TFBS_chinmo
3R	16181427	3R_16181427_SNP [dm3] 3R_20355705_SNP [dm6]	G	T	4.997e^-4	0.979	INTERGENIC
2R	12315530	2R_12315530_SNP [dm3] 2R_16428025_SNP [dm6]	T	C	5.001e^-4	0.979	INTRON Sema-2b
3R	19041227	3R_19041227_SNP [dm3] 3R_23215505_SNP [dm6]	A	T	5.004e^-4	0.979	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25540644	3R_25540644_SNP [dm3] 3R_29714922_SNP [dm6]	C	A	5.005e^-4	0.979	NON_SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	4812034	X_4812034_SNP [dm3] X_4918001_SNP [dm6]	A	G	5.006e^-4	0.979	UPSTREAM CG6903 INTRON CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2073990	2L_2073990_SNP [dm3] 2L_2073990_SNP [dm6]	T	C	5.025e^-4	0.979	INTRON dpr3
2L	290166	2L_290166_SNP [dm3] 2L_290166_SNP [dm6]	G	A	5.032e^-4	0.979	INTRON CG3625
3R	17864934	3R_17864934_SNP [dm3] 3R_22039212_SNP [dm6]	A	G	5.035e^-4	0.979	DOWNSTREAM pit INTERGENIC
2L	9707783	2L_9707783_SNP [dm3] 2L_9707783_SNP [dm6]	G	C	5.045e^-4	0.979	INTRON pelo
2L	10097744	2L_10097744_SNP [dm3] 2L_10097744_SNP [dm6]	A	G	5.052e^-4	0.979	INTRON CG34109 & 1 other
3L	18066306	3L_18066306_DEL [dm3] 3L_18073206_DEL [dm6]	AATC	A	5.053e^-4	0.979	INTRON CG44004
2L	1581505	2L_1581505_DEL [dm3] 2L_1581505_DEL [dm6]	AA	A	5.054e^-4	0.979	INTRON haf
2R	10812784	2R_10812784_SNP [dm3] 2R_14925279_SNP [dm6]	T	C	5.061e^-4	0.979	INTRON CG10249	TF binding site BDTNP1_TFBS_twi
3L	13677905	3L_13677905_SNP [dm3] 3L_13684805_SNP [dm6]	G	A	5.061e^-4	0.979	INTRON bru-3
2R	7324060	2R_7324060_SNP [dm3] 2R_11436555_SNP [dm6]	A	C	5.062e^-4	0.979	INTRON CG7777
2R	16101673	2R_16101673_SNP [dm3] 2R_20214168_SNP [dm6]	A	G	5.066e^-4	0.979	INTERGENIC
2L	7400999	2L_7400999_SNP [dm3] 2L_7400999_SNP [dm6]	A	T	5.072e^-4	0.979	UPSTREAM CG5171 INTERGENIC
3R	14900999	3R_14900999_SNP [dm3] 3R_19075277_SNP [dm6]	T	A	5.073e^-4	0.979	INTRON cdi
X	10158863	X_10158863_SNP [dm3] X_10264830_SNP [dm6]	T	C	5.076e^-4	0.979	UTR_3_PRIME CG12643
X	1211887	X_1211887_SNP [dm3] X_1317854_SNP [dm6]	T	C	5.083e^-4	0.979	INTRON DAAM	TF binding site BDTNP1_TFBS_twi
2R	16655583	2R_16655583_SNP [dm3] 2R_20768078_SNP [dm6]	A	G	5.088e^-4	0.979	DOWNSTREAM CR44665 INTERGENIC
2R	9303623	2R_9303623_SNP [dm3] 2R_13416118_SNP [dm6]	A	G	5.088e^-4	0.979	INTRON CG42321	TF binding site mE1_TFBS_HSA
3L	9770611	3L_9770611_SNP [dm3] 3L_9777511_SNP [dm6]	C	T	5.095e^-4	0.979	INTRON CG8177
2R	3502104	2R_3502104_SNP [dm3] 2R_7614599_SNP [dm6]	G	A	5.095e^-4	0.979	UPSTREAM CG1358 INTRON CG1358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19742614	3R_19742614_SNP [dm3] 3R_23916892_SNP [dm6]	T	C	5.096e^-4	0.979	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12791943	3L_12791943_SNP [dm3] 3L_12798843_SNP [dm6]	A	T	5.105e^-4	0.979	INTRON Atg1
2L	16711631	2L_16711631_DEL [dm3] 2L_16711631_DEL [dm6]	AATGGCCACT	A	5.106e^-4	0.979	INTRON CG31808	TF binding site mE1_TFBS_inv
X	2982468	X_2982468_SNP [dm3] X_3088435_SNP [dm6]	G	A	5.107e^-4	0.979	INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12232805	3R_12232805_SNP [dm3] 3R_16407083_SNP [dm6]	G	C	5.108e^-4	0.979	EXON CR45630
X	17390284	X_17390284_INS [dm3] X_17496251_INS [dm6]	A	ACATA	5.110e^-4	0.979	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	15111916	2L_15111916_SNP [dm3] 2L_15111916_SNP [dm6]	A	T	5.117e^-4	0.979	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9485596	X_9485596_SNP [dm3] X_9591563_SNP [dm6]	C	T	5.119e^-4	0.979	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1319948	3L_1319948_SNP [dm3] 3L_1319948_SNP [dm6]	T	C	5.123e^-4	0.979	INTRON Myo61F
3R	341940	3R_341940_SNP [dm3] 3R_4516218_SNP [dm6]	G	A	5.124e^-4	0.979	INTRON CG34357	transposable element FlyBase
3L	9245006	3L_9245006_SNP [dm3] 3L_9251906_SNP [dm6]	A	G	5.131e^-4	0.979	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9486694	X_9486694_SNP [dm3] X_9592661_SNP [dm6]	T	A	5.139e^-4	0.979	INTERGENIC
3R	22722077	3R_22722077_SNP [dm3] 3R_26896355_SNP [dm6]	G	A	5.141e^-4	0.979	INTRON T48	regulatory region REDfly_CRMs
2L	4850927	2L_4850927_SNP [dm3] 2L_4850927_SNP [dm6]	A	G	5.144e^-4	0.979	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2	TF binding site mE1_TFBS_sens
3L	9628655	3L_9628655_SNP [dm3] 3L_9635555_SNP [dm6]	T	A	5.147e^-4	0.979	INTRON fry
2L	16419051	2L_16419051_SNP [dm3] 2L_16419051_SNP [dm6]	C	A	5.153e^-4	0.979	INTRON CG5888
2R	18039555	2R_18039555_SNP [dm3] 2R_22152050_SNP [dm6]	T	C	5.165e^-4	0.98	INTRON a
2L	21147919	2L_21147919_SNP [dm3] 2L_21147919_SNP [dm6]	G	A	5.166e^-4	0.98	NON_SYNONYMOUS_CODING del	TF binding site mE1_TFBS_inv
X	1604763	X_1604763_SNP [dm3] X_1710730_SNP [dm6]	G	T	5.175e^-4	0.98	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1592136	3L_1592136_SNP [dm3] 3L_1592136_SNP [dm6]	G	A	5.178e^-4	0.98	INTRON CG13917	TF binding site BDTNP1_TFBS_dl
3L	10872166	3L_10872166_SNP [dm3] 3L_10879066_SNP [dm6]	G	A	5.187e^-4	0.98	UPSTREAM Blos4 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10229340	2R_10229340_SNP [dm3] 2R_14341835_SNP [dm6]	G	A	5.187e^-4	0.98	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3L	12617367	3L_12617367_SNP [dm3] 3L_12624267_SNP [dm6]	T	A	5.198e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13871839	2L_13871839_SNP [dm3] 2L_13871839_SNP [dm6]	G	T	5.199e^-4	0.98	INTRON CenG1A
3L	5632922	3L_5632922_SNP [dm3] 3L_5639822_SNP [dm6]	C	T	5.206e^-4	0.98	INTRON Blimp-1
X	10977160	X_10977160_SNP [dm3] X_11083127_SNP [dm6]	C	G	5.212e^-4	0.98	INTRON sev
3R	12193008	3R_12193008_SNP [dm3] 3R_16367286_SNP [dm6]	G	C	5.213e^-4	0.98	INTRON CG14880	regulatory region REDfly_CRMs
2L	12155322	2L_12155322_SNP [dm3] 2L_12155322_SNP [dm6]	G	A	5.222e^-4	0.98	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2461801	3L_2461801_DEL [dm3] 3L_2461801_DEL [dm6]	TGT	T	5.228e^-4	0.98	INTRON CG45186
2L	9981540	2L_9981540_SNP [dm3] 2L_9981540_SNP [dm6]	T	A	5.236e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens

By genomic position
Variant impact
Gene name

PC5_Nutri_Score_Low phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results