DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.663e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.0813

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	3.7089	0.0541
In_2L_t	5.7119	0.0575
In_2R_NS	6.9435	0.0311

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1875 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2514417	X_2514417_SNP [dm3] X_2620384_SNP [dm6]	G	T	1.833e^-7	0.182	SYNONYMOUS_CODING Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13754674	2L_13754674_SNP [dm3] 2L_13754674_SNP [dm6]	C	A	1.944e^-7	0.182	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
X	2514292	X_2514292_SNP [dm3] X_2620259_SNP [dm6]	C	A	4.760e^-7	0.187	UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13754675	2L_13754675_SNP [dm3] 2L_13754675_SNP [dm6]	A	G	4.925e^-7	0.187	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
X	5336457	X_5336457_SNP [dm3] X_5442424_SNP [dm6]	G	A	4.986e^-7	0.187	INTERGENIC
2L	20852414	2L_20852414_SNP [dm3] 2L_20852414_SNP [dm6]	C	A	6.768e^-7	0.207	UPSTREAM twit INTERGENIC	TF binding site mE1_TFBS_cad
X	2514295	X_2514295_SNP [dm3] X_2620262_SNP [dm6]	A	G	7.742e^-7	0.207	START_GAINED Seipin UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12262931	3L_12262931_SNP [dm3] 3L_12269831_SNP [dm6]	C	A	9.792e^-7	0.229	UTR_3_PRIME Pbgs DOWNSTREAM Pbgs & 1 other
3L	13827221	3L_13827221_DEL [dm3] 3L_13834121_DEL [dm6]	AGA	A	1.344e^-6	0.28	INTERGENIC
X	20722858	X_20722858_SNP [dm3] X_20851831_SNP [dm6]	C	T	1.727e^-6	0.324	INTRON shakB
2R	4324387	2R_4324387_SNP [dm3] 2R_8436882_SNP [dm6]	A	G	2.796e^-6	0.476	UPSTREAM Lcp4 DOWNSTREAM Lcp3 INTERGENIC
3L	14433920	3L_14433920_SNP [dm3] 3L_14440820_SNP [dm6]	T	G	3.045e^-6	0.476	INTRON bbg
2L	3222068	2L_3222068_SNP [dm3] 2L_3222068_SNP [dm6]	T	A	3.501e^-6	0.477	INTERGENIC
2L	17715989	2L_17715989_SNP [dm3] 2L_17715989_SNP [dm6]	C	T	3.560e^-6	0.477	INTRON CadN	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	20722902	X_20722902_SNP [dm3] X_20851875_SNP [dm6]	T	A	4.097e^-6	0.512	INTRON shakB
2L	20956300	2L_20956300_SNP [dm3] 2L_20956300_SNP [dm6]	T	C	5.179e^-6	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	6.360e^-6	0.696	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25772483	3R_25772483_SNP [dm3] 3R_29946761_SNP [dm6]	G	A	6.685e^-6	0.696	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
X	4831334	X_4831334_SNP [dm3] X_4937301_SNP [dm6]	G	A	7.643e^-6	0.725	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9705907	2L_9705907_SNP [dm3] 2L_9705907_SNP [dm6]	G	A	7.735e^-6	0.725	START_GAINED CG31710 UTR_5_PRIME CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	14591926	2L_14591926_SNP [dm3] 2L_14591926_SNP [dm6]	A	T	9.991e^-6	0.856	INTERGENIC
2R	4324019	2R_4324019_SNP [dm3] 2R_8436514_SNP [dm6]	A	T	1.137e^-5	0.856	DOWNSTREAM Lcp3 INTERGENIC
X	12057977	X_12057977_SNP [dm3] X_12163944_SNP [dm6]	C	A	1.183e^-5	0.856	INTRON Ten-a
3L	11448470	3L_11448470_SNP [dm3] 3L_11455370_SNP [dm6]	C	T	1.208e^-5	0.856	INTERGENIC
2L	20846471	2L_20846471_SNP [dm3] 2L_20846471_SNP [dm6]	C	T	1.304e^-5	0.856	INTRON CG31676
2R	15465744	2R_15465744_SNP [dm3] 2R_19578239_SNP [dm6]	T	C	1.336e^-5	0.856	INTRON sm
2L	6826035	2L_6826035_SNP [dm3] 2L_6826035_SNP [dm6]	T	A	1.352e^-5	0.856	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12263000	3L_12263000_SNP [dm3] 3L_12269900_SNP [dm6]	C	A	1.359e^-5	0.856	UTR_3_PRIME Pbgs DOWNSTREAM Pbgs & 1 other
2R	14490269	2R_14490269_SNP [dm3] 2R_18602764_SNP [dm6]	G	T	1.402e^-5	0.856	INTRON GEFmeso
X	21204018	X_21204018_INS [dm3] X_21332991_INS [dm6]	T	TT	1.470e^-5	0.856	UTR_3_PRIME tty INTRON tty	TF binding site mE1_TFBS_cad
2R	4324047	2R_4324047_SNP [dm3] 2R_8436542_SNP [dm6]	T	A	1.518e^-5	0.856	DOWNSTREAM Lcp3 INTERGENIC
X	2514075	X_2514075_SNP [dm3] X_2620042_SNP [dm6]	G	C	1.540e^-5	0.856	UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	13234305	2R_13234305_SNP [dm3] 2R_17346800_SNP [dm6]	G	C	1.560e^-5	0.856	INTRON mbl
3L	2377147	3L_2377147_SNP [dm3] 3L_2377147_SNP [dm6]	C	T	1.561e^-5	0.856	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	9321217	X_9321217_SNP [dm3] X_9427184_SNP [dm6]	T	A	1.599e^-5	0.856	INTRON mgl
X	9321206	X_9321206_SNP [dm3] X_9427173_SNP [dm6]	T	A	1.647e^-5	0.858	INTRON mgl
X	20723084	X_20723084_SNP [dm3] X_20852057_SNP [dm6]	G	T	1.783e^-5	0.877	INTRON shakB
2R	3178527	2R_3178527_SNP [dm3] 2R_7291022_SNP [dm6]	T	A	1.831e^-5	0.877	INTRON pwn	TF binding site mE1_TFBS_cad
2L	15381290	2L_15381290_SNP [dm3] 2L_15381290_SNP [dm6]	G	T	1.871e^-5	0.877	INTERGENIC
X	20860324	X_20860324_SNP [dm3] X_20989297_SNP [dm6]	T	A	1.904e^-5	0.877	INTERGENIC
2L	18486222	2L_18486222_DEL [dm3] 2L_18486222_DEL [dm6]	TTCCAAAAGATT...	T	1.936e^-5	0.877	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	13853684	3L_13853684_SNP [dm3] 3L_13860584_SNP [dm6]	G	T	1.965e^-5	0.877	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	4324394	2R_4324394_SNP [dm3] 2R_8436889_SNP [dm6]	C	T	2.072e^-5	0.89	UPSTREAM Lcp4 DOWNSTREAM Lcp3 INTERGENIC
2R	3240066	2R_3240066_SNP [dm3] 2R_7352561_SNP [dm6]	A	G	2.108e^-5	0.89	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6570851	2R_6570851_SNP [dm3] 2R_10683346_SNP [dm6]	T	C	2.136e^-5	0.89	INTRON stan	TF binding site BDTNP1_TFBS_dl
2L	17319029	2L_17319029_SNP [dm3] 2L_17319029_SNP [dm6]	G	C	2.208e^-5	0.9	DOWNSTREAM CR45696 INTERGENIC
X	11939987	X_11939987_SNP [dm3] X_12045954_SNP [dm6]	C	T	2.316e^-5	0.9	INTRON CR43960 & 1 other
3R	12947547	3R_12947547_SNP [dm3] 3R_17121825_SNP [dm6]	A	G	2.363e^-5	0.9	UTR_3_PRIME CG42779 INTRON cher	TF binding site mE1_TFBS_inv
2R	14077331	2R_14077331_SNP [dm3] 2R_18189826_SNP [dm6]	T	G	2.420e^-5	0.9	DOWNSTREAM CG14500 INTRON CG33958
3R	20355955	3R_20355955_SNP [dm3] 3R_24530233_SNP [dm6]	C	A	2.511e^-5	0.9	UPSTREAM ana1 DOWNSTREAM CG6607 INTRON CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	21893008	X_21893008_SNP [dm3] X_22491172_SNP [dm6]	A	T	2.544e^-5	0.9	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
X	11658627	X_11658627_SNP [dm3] X_11764594_SNP [dm6]	C	T	2.623e^-5	0.9	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
2R	16648581	2R_16648581_SNP [dm3] 2R_20761076_SNP [dm6]	T	C	2.681e^-5	0.9	INTERGENIC
3L	6560960	3L_6560960_SNP [dm3] 3L_6567860_SNP [dm6]	A	G	2.681e^-5	0.9	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_HSA
2R	4321121	2R_4321121_SNP [dm3] 2R_8433616_SNP [dm6]	A	T	2.795e^-5	0.9	UPSTREAM Lcp1Psi DOWNSTREAM Lcp2 INTERGENIC
3R	23854220	3R_23854220_SNP [dm3] 3R_28028498_SNP [dm6]	A	T	2.820e^-5	0.9	INTRON CG34362
2L	6826022	2L_6826022_DEL [dm3] 2L_6826022_DEL [dm6]	TGT	T	3.024e^-5	0.9	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11999003	3L_11999003_SNP [dm3] 3L_12005903_SNP [dm6]	T	C	3.149e^-5	0.9	INTRON CG6928
X	11940008	X_11940008_SNP [dm3] X_12045975_SNP [dm6]	G	A	3.278e^-5	0.9	INTRON CR43960 & 1 other
3R	26493928	3R_26493928_DEL [dm3] 3R_30668206_DEL [dm6]	TGTAT	T	3.364e^-5	0.9	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21020153	2L_21020153_SNP [dm3] 2L_21020153_SNP [dm6]	T	C	3.374e^-5	0.9	INTRON CG42238
3R	11494454	3R_11494454_SNP [dm3] 3R_15668732_SNP [dm6]	C	G	3.452e^-5	0.9	DOWNSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7802249	3L_7802249_SNP [dm3] 3L_7809149_SNP [dm6]	T	A	3.543e^-5	0.9	UTR_5_PRIME CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4324395	2R_4324395_SNP [dm3] 2R_8436890_SNP [dm6]	A	T	3.716e^-5	0.9	UPSTREAM Lcp4 DOWNSTREAM Lcp3 INTERGENIC
X	21465899	X_21465899_SNP [dm3] X_21594872_SNP [dm6]	C	T	3.749e^-5	0.9	INTERGENIC
2L	13754697	2L_13754697_SNP [dm3] 2L_13754697_SNP [dm6]	C	A	3.756e^-5	0.9	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2L	8228159	2L_8228159_SNP [dm3] 2L_8228159_SNP [dm6]	G	A	3.802e^-5	0.9	SYNONYMOUS_CODING Pvr INTRON Pvr
X	4825101	X_4825101_SNP [dm3] X_4931068_SNP [dm6]	A	C	3.831e^-5	0.9	START_GAINED CG44774 UTR_5_PRIME CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22687503	3R_22687503_SNP [dm3] 3R_26861781_SNP [dm6]	C	T	4.001e^-5	0.9	NON_SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
X	2626792	X_2626792_SNP [dm3] X_2732759_SNP [dm6]	C	T	4.031e^-5	0.9	SYNONYMOUS_CODING CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15451247	2R_15451247_SNP [dm3] 2R_19563742_SNP [dm6]	G	A	4.042e^-5	0.9	INTRON sm
3L	2483458	3L_2483458_SNP [dm3] 3L_2483458_SNP [dm6]	C	T	4.073e^-5	0.9	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18576538	2L_18576538_SNP [dm3] 2L_18576538_SNP [dm6]	T	G	4.139e^-5	0.9	INTRON Pde11
3R	20396951	3R_20396951_SNP [dm3] 3R_24571229_SNP [dm6]	C	T	4.152e^-5	0.9	INTRON CG13624
2L	15058467	2L_15058467_SNP [dm3] 2L_15058467_SNP [dm6]	T	A	4.162e^-5	0.9	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3R	22687498	3R_22687498_SNP [dm3] 3R_26861776_SNP [dm6]	C	A	4.178e^-5	0.9	SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
X	7434766	X_7434766_SNP [dm3] X_7540733_SNP [dm6]	G	A	4.213e^-5	0.9	INTRON CG32719
2L	9035540	2L_9035540_SNP [dm3] 2L_9035540_SNP [dm6]	G	C	4.236e^-5	0.9	INTERGENIC
2R	6115652	2R_6115652_SNP [dm3] 2R_10228147_SNP [dm6]	G	T	4.338e^-5	0.9	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15059588	2R_15059588_SNP [dm3] 2R_19172083_SNP [dm6]	G	A	4.421e^-5	0.9	INTRON CG10737
2R	16272399	2R_16272399_SNP [dm3] 2R_20384894_SNP [dm6]	A	C	4.450e^-5	0.9	INTERGENIC
2L	6826029	2L_6826029_DEL [dm3] 2L_6826029_DEL [dm6]	GGT	G	4.529e^-5	0.9	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3192999	2R_3192999_DEL [dm3] 2R_7305494_DEL [dm6]	ATG	A	4.564e^-5	0.9	INTERGENIC
3L	6560978	3L_6560978_SNP [dm3] 3L_6567878_SNP [dm6]	T	C	4.590e^-5	0.9	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_HSA
2R	3840978	2R_3840978_INS [dm3] 2R_7953473_INS [dm6]	G	GG	4.648e^-5	0.9	INTRON CG14764	TF binding site mE1_TFBS_inv
3R	22334010	3R_22334010_SNP [dm3] 3R_26508288_SNP [dm6]	T	C	4.649e^-5	0.9	INTRON plum
X	3303571	X_3303571_SNP [dm3] X_3409538_SNP [dm6]	T	C	4.759e^-5	0.9	INTRON CR44999 & 1 other
3R	19845152	3R_19845152_SNP [dm3] 3R_24019430_SNP [dm6]	T	G	4.784e^-5	0.9	INTRON KrT95D
X	13001278	X_13001278_SNP [dm3] X_13107245_SNP [dm6]	T	G	4.815e^-5	0.9	DOWNSTREAM Fer3HCH INTRON CG43313
3R	12924367	3R_12924367_SNP [dm3] 3R_17098645_SNP [dm6]	C	T	4.824e^-5	0.9	UTR_5_PRIME cher INTRON cher
3R	12924388	3R_12924388_SNP [dm3] 3R_17098666_SNP [dm6]	G	A	4.830e^-5	0.9	START_GAINED cher UTR_5_PRIME cher INTRON cher
3L	7799455	3L_7799455_SNP [dm3] 3L_7806355_SNP [dm6]	A	T	4.936e^-5	0.9	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	20037817	3L_20037817_SNP [dm3] 3L_20044717_SNP [dm6]	G	A	4.948e^-5	0.9	INTERGENIC
2L	14325524	2L_14325524_SNP [dm3] 2L_14325524_SNP [dm6]	T	C	4.986e^-5	0.9	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2R	16696898	2R_16696898_SNP [dm3] 2R_20809393_SNP [dm6]	T	C	5.080e^-5	0.9	INTERGENIC
3L	6560534	3L_6560534_SNP [dm3] 3L_6567434_SNP [dm6]	G	A	5.097e^-5	0.9	SYNONYMOUS_CODING jv INTRON CG18769
2L	3229825	2L_3229825_SNP [dm3] 2L_3229825_SNP [dm6]	T	C	5.197e^-5	0.9	INTERGENIC
2R	7056931	2R_7056931_SNP [dm3] 2R_11169426_SNP [dm6]	A	G	5.220e^-5	0.9	INTRON shn & 1 other
2L	17245420	2L_17245420_SNP [dm3] 2L_17245420_SNP [dm6]	A	G	5.282e^-5	0.9	DOWNSTREAM CR44396 INTRON beat-IIIc
X	17212325	X_17212325_SNP [dm3] X_17318292_SNP [dm6]	T	C	5.337e^-5	0.9	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4824943	X_4824943_SNP [dm3] X_4930910_SNP [dm6]	C	G	5.350e^-5	0.9	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11270479	2R_11270479_SNP [dm3] 2R_15382974_SNP [dm6]	T	A	5.354e^-5	0.9	UPSTREAM SRPK INTRON SRPK
2R	14698646	2R_14698646_SNP [dm3] 2R_18811141_SNP [dm6]	T	A	5.390e^-5	0.9	INTRON CG15096
3R	21711169	3R_21711169_SNP [dm3] 3R_25885447_SNP [dm6]	G	A	5.424e^-5	0.9	UTR_5_PRIME SppL	TF binding site BDTNP1_TFBS_da
2R	8489996	2R_8489996_SNP [dm3] 2R_12602491_SNP [dm6]	G	A	5.442e^-5	0.9	INTRON Amph
X	21495542	X_21495542_INS [dm3] X_21624515_INS [dm6]	G	GACG	5.462e^-5	0.9	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	5.464e^-5	0.9	INTERGENIC
X	5303073	X_5303073_SNP [dm3] X_5409040_SNP [dm6]	C	T	5.492e^-5	0.9	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	17319010	2L_17319010_SNP [dm3] 2L_17319010_SNP [dm6]	A	T	5.498e^-5	0.9	DOWNSTREAM CR45696 INTERGENIC
X	5861001	X_5861001_SNP [dm3] X_5966968_SNP [dm6]	T	C	5.595e^-5	0.9	INTRON Grip
3R	21584290	3R_21584290_SNP [dm3] 3R_25758568_SNP [dm6]	T	A	5.596e^-5	0.9	INTRON LpR1
X	20046559	X_20046559_INS [dm3] X_20152526_INS [dm6]	A	ATA	5.709e^-5	0.9	INTRON CG9572	TF binding site mE1_TFBS_inv
2L	14004237	2L_14004237_SNP [dm3] 2L_14004237_SNP [dm6]	G	A	5.740e^-5	0.9	INTERGENIC
3L	9303714	3L_9303714_SNP [dm3] 3L_9310614_SNP [dm6]	G	T	5.802e^-5	0.9	INTERGENIC
2R	6127657	2R_6127657_SNP [dm3] 2R_10240152_SNP [dm6]	T	C	5.847e^-5	0.9	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21465912	X_21465912_INS [dm3] X_21594885_INS [dm6]	A	ACATA	5.871e^-5	0.9	INTERGENIC
3L	10301679	3L_10301679_SNP [dm3] 3L_10308579_SNP [dm6]	T	G	5.905e^-5	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12924178	3R_12924178_SNP [dm3] 3R_17098456_SNP [dm6]	T	C	5.938e^-5	0.9	INTRON cher
2L	14458500	2L_14458500_SNP [dm3] 2L_14458500_SNP [dm6]	C	A	6.063e^-5	0.9	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	20723988	X_20723988_SNP [dm3] X_20852961_SNP [dm6]	C	A	6.064e^-5	0.9	INTRON shakB
2L	10349244	2L_10349244_SNP [dm3] 2L_10349244_SNP [dm6]	A	G	6.074e^-5	0.9	INTRON CG34367
3L	5259715	3L_5259715_SNP [dm3] 3L_5266615_SNP [dm6]	C	A	6.090e^-5	0.9	INTRON shep
2L	17245432	2L_17245432_SNP [dm3] 2L_17245432_SNP [dm6]	G	T	6.157e^-5	0.9	DOWNSTREAM CR44396 INTRON beat-IIIc
3R	20356358	3R_20356358_SNP [dm3] 3R_24530636_SNP [dm6]	A	T	6.202e^-5	0.9	UTR_5_PRIME ana1 UPSTREAM ana1 & 1 other DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4678615	3R_4678615_SNP [dm3] 3R_8852893_SNP [dm6]	A	T	6.215e^-5	0.9	INTRON pyd
X	11940139	X_11940139_SNP [dm3] X_12046106_SNP [dm6]	A	T	6.239e^-5	0.9	INTRON CR43960 & 1 other
3L	21537304	3L_21537304_SNP [dm3] 3L_21544204_SNP [dm6]	A	G	6.241e^-5	0.9	SYNONYMOUS_CODING Wnk
3L	5259716	3L_5259716_SNP [dm3] 3L_5266616_SNP [dm6]	T	A	6.263e^-5	0.9	INTRON shep
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	6.299e^-5	0.9	INTERGENIC
2R	3413802	2R_3413802_SNP [dm3] 2R_7526297_SNP [dm6]	C	T	6.347e^-5	0.9	UTR_3_PRIME Drat UPSTREAM Orc1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv
2L	7268482	2L_7268482_SNP [dm3] 2L_7268482_SNP [dm6]	C	A	6.348e^-5	0.9	INTRON Wnt4
2L	6343048	2L_6343048_SNP [dm3] 2L_6343048_SNP [dm6]	T	C	6.395e^-5	0.9	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11209417	2L_11209417_SNP [dm3] 2L_11209417_SNP [dm6]	C	T	6.468e^-5	0.9	INTERGENIC	silencer mE1_HDAC_PRE
2R	7454292	2R_7454292_SNP [dm3] 2R_11566787_SNP [dm6]	G	A	6.494e^-5	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	17319902	2L_17319902_SNP [dm3] 2L_17319902_SNP [dm6]	T	G	6.604e^-5	0.9	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17936762	3R_17936762_SNP [dm3] 3R_22111040_SNP [dm6]	T	C	6.626e^-5	0.9	UPSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20856551	2L_20856551_SNP [dm3] 2L_20856551_SNP [dm6]	C	T	6.704e^-5	0.9	SYNONYMOUS_CODING twit DOWNSTREAM CG14400
2R	10096702	2R_10096702_SNP [dm3] 2R_14209197_SNP [dm6]	T	G	6.805e^-5	0.9	INTRON Sox15	regulatory region REDfly_CRMs
2L	6829601	2L_6829601_SNP [dm3] 2L_6829601_SNP [dm6]	C	A	6.808e^-5	0.9	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	17399186	X_17399186_SNP [dm3] X_17505153_SNP [dm6]	G	C	6.819e^-5	0.9	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	14677156	2L_14677156_SNP [dm3] 2L_14677156_SNP [dm6]	T	G	6.888e^-5	0.9	INTRON osp
3L	16808349	3L_16808349_SNP [dm3] 3L_16815249_SNP [dm6]	T	A	6.897e^-5	0.9	INTRON nudC & 1 other
3L	5721007	3L_5721007_SNP [dm3] 3L_5727907_SNP [dm6]	T	C	6.940e^-5	0.9	INTRON sif
2L	3221523	2L_3221523_SNP [dm3] 2L_3221523_SNP [dm6]	G	A	6.961e^-5	0.9	INTERGENIC
3R	23432353	3R_23432353_SNP [dm3] 3R_27606631_SNP [dm6]	G	T	6.997e^-5	0.9	INTRON dsd
X	3866873	X_3866873_SNP [dm3] X_3972840_SNP [dm6]	G	C	7.011e^-5	0.9	DOWNSTREAM CR45481 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14059045	3R_14059045_SNP [dm3] 3R_18233323_SNP [dm6]	C	A	7.136e^-5	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	3667685	2L_3667685_SNP [dm3] 2L_3667685_SNP [dm6]	T	G	7.224e^-5	0.9	DOWNSTREAM Sfp24Ba INTRON CG34340
3R	26743615	3R_26743615_SNP [dm3] 3R_30917893_SNP [dm6]	T	G	7.234e^-5	0.9	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20011262	2R_20011262_SNP [dm3] 2R_24123739_SNP [dm6]	G	C	7.313e^-5	0.9	NON_SYNONYMOUS_CODING CG43777 SPLICE_SITE_REGION CG43777 & 2 others UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3838600	2L_3838600_SNP [dm3] 2L_3838600_SNP [dm6]	C	A	7.593e^-5	0.9	UTR_3_PRIME slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1068298	2R_1068298_SNP [dm3] 2R_5180793_SNP [dm6]	A	G	7.676e^-5	0.9	SYNONYMOUS_CODING Nipped-A
3R	25898843	3R_25898843_SNP [dm3] 3R_30073121_SNP [dm6]	C	T	7.718e^-5	0.9	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14458507	2L_14458507_SNP [dm3] 2L_14458507_SNP [dm6]	C	G	7.763e^-5	0.9	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14533962	3R_14533962_SNP [dm3] 3R_18708240_SNP [dm6]	G	A	7.769e^-5	0.9	INTRON VAChT & 1 other
2L	20903503	2L_20903503_SNP [dm3] 2L_20903503_SNP [dm6]	G	A	7.769e^-5	0.9	UTR_5_PRIME sky & 1 other
3R	26732068	3R_26732068_SNP [dm3] 3R_30906346_SNP [dm6]	G	A	7.780e^-5	0.9	INTERGENIC
2L	3838566	2L_3838566_SNP [dm3] 2L_3838566_SNP [dm6]	G	A	7.781e^-5	0.9	UTR_3_PRIME slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14677155	2L_14677155_SNP [dm3] 2L_14677155_SNP [dm6]	A	T	7.923e^-5	0.9	INTRON osp
3L	16807647	3L_16807647_SNP [dm3] 3L_16814547_SNP [dm6]	T	A	7.975e^-5	0.9	INTRON nudC & 1 other
2R	17153305	2R_17153305_SNP [dm3] 2R_21265800_SNP [dm6]	C	T	8.025e^-5	0.9	NON_SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	5721135	3L_5721135_SNP [dm3] 3L_5728035_SNP [dm6]	T	G	8.050e^-5	0.9	INTRON sif
2L	20862775	2L_20862775_DEL [dm3] 2L_20862775_DEL [dm6]	GTTGTGGAAA	G	8.132e^-5	0.9	EXON CR9337
3R	19845157	3R_19845157_SNP [dm3] 3R_24019435_SNP [dm6]	G	A	8.146e^-5	0.9	INTRON KrT95D
2R	15228543	2R_15228543_SNP [dm3] 2R_19341038_SNP [dm6]	T	A	8.150e^-5	0.9	UPSTREAM CG9975 INTRON Rgk1
2L	14677148	2L_14677148_SNP [dm3] 2L_14677148_SNP [dm6]	A	G	8.163e^-5	0.9	INTRON osp
X	4831609	X_4831609_DEL [dm3] X_4937576_DEL [dm6]	AGA	A	8.172e^-5	0.9	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26725236	3R_26725236_SNP [dm3] 3R_30899514_SNP [dm6]	G	A	8.179e^-5	0.9	SYNONYMOUS_CODING Cyp4c3
2L	17319035	2L_17319035_SNP [dm3] 2L_17319035_SNP [dm6]	A	T	8.181e^-5	0.9	DOWNSTREAM CR45696 INTERGENIC
2L	17535129	2L_17535129_SNP [dm3] 2L_17535129_SNP [dm6]	T	A	8.243e^-5	0.9	INTERGENIC
X	4836471	X_4836471_SNP [dm3] X_4942438_SNP [dm6]	T	C	8.260e^-5	0.9	INTRON Ptp4E
2L	8560192	2L_8560192_DEL [dm3] 2L_8560192_DEL [dm6]	TCCTATAT	T	8.279e^-5	0.9	INTRON Sema-1a
X	20685694	X_20685694_INS [dm3] X_20814667_INS [dm6]	A	ATGGAAAACGTAGAAGGAAA...	8.361e^-5	0.9	INTRON shakB
3L	2377648	3L_2377648_SNP [dm3] 3L_2377648_SNP [dm6]	G	A	8.402e^-5	0.9	UPSTREAM CG45186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24732477	3R_24732477_SNP [dm3] 3R_28906755_SNP [dm6]	G	A	8.454e^-5	0.9	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	8395694	2L_8395694_SNP [dm3] 2L_8395694_SNP [dm6]	G	T	8.472e^-5	0.9	UTR_3_PRIME Peritrophin-15a UPSTREAM Peritrophin-15b & 1 other DOWNSTREAM CR45343
2L	21206088	2L_21206088_SNP [dm3] 2L_21206088_SNP [dm6]	C	T	8.523e^-5	0.9	UPSTREAM clumsy INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16806088	3L_16806088_SNP [dm3] 3L_16812988_SNP [dm6]	T	C	8.578e^-5	0.9	UPSTREAM CG13024 INTRON nudC & 1 other
3R	1358060	3R_1358060_SNP [dm3] 3R_5532338_SNP [dm6]	C	T	8.606e^-5	0.9	INTRON Itp-r83A
3R	25767525	3R_25767525_SNP [dm3] 3R_29941803_SNP [dm6]	C	G	8.764e^-5	0.9	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	14059164	3R_14059164_SNP [dm3] 3R_18233442_SNP [dm6]	C	T	8.777e^-5	0.9	INTERGENIC	regulatory region REDfly_CRMs
X	2626586	X_2626586_SNP [dm3] X_2732553_SNP [dm6]	C	G	8.805e^-5	0.9	UTR_5_PRIME CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14330591	2L_14330591_SNP [dm3] 2L_14330591_SNP [dm6]	G	A	8.820e^-5	0.9	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14331739	2L_14331739_SNP [dm3] 2L_14331739_SNP [dm6]	T	C	8.887e^-5	0.9	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6569255	2L_6569255_SNP [dm3] 2L_6569255_SNP [dm6]	G	T	8.888e^-5	0.9	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9523922	2L_9523922_DEL [dm3] 2L_9523922_DEL [dm6]	TATCAGATTCGCTTAACTAT...	T	8.977e^-5	0.902	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	8489989	2R_8489989_SNP [dm3] 2R_12602484_SNP [dm6]	C	T	9.009e^-5	0.902	INTRON Amph
X	21498443	X_21498443_SNP [dm3] X_21627416_SNP [dm6]	C	T	9.164e^-5	0.902	INTRON DIP1	transposable element FlyBase
2R	14520480	2R_14520480_SNP [dm3] 2R_18632975_SNP [dm6]	C	T	9.230e^-5	0.902	SYNONYMOUS_CODING CG30122 UPSTREAM CG5482
2R	6127263	2R_6127263_SNP [dm3] 2R_10239758_SNP [dm6]	A	C	9.406e^-5	0.902	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25766778	3R_25766778_SNP [dm3] 3R_29941056_SNP [dm6]	G	C	9.521e^-5	0.902	SYNONYMOUS_CODING CG15523
2R	15228563	2R_15228563_DEL [dm3] 2R_19341058_DEL [dm6]	CGCAGAA	C	9.528e^-5	0.902	UPSTREAM CG9975 INTRON Rgk1
3R	23432412	3R_23432412_SNP [dm3] 3R_27606690_SNP [dm6]	G	C	9.616e^-5	0.902	INTRON dsd
2R	15703742	2R_15703742_SNP [dm3] 2R_19816237_SNP [dm6]	C	T	9.633e^-5	0.902	DOWNSTREAM Obp56h INTERGENIC
2R	6141602	2R_6141602_SNP [dm3] 2R_10254097_SNP [dm6]	T	A	9.644e^-5	0.902	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5279824	2R_5279824_SNP [dm3] 2R_9392319_SNP [dm6]	A	G	9.657e^-5	0.902	NON_SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4824921	X_4824921_SNP [dm3] X_4930888_SNP [dm6]	C	G	9.660e^-5	0.902	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16253813	2R_16253813_INS [dm3] 2R_20366308_INS [dm6]	A	ACA	9.699e^-5	0.902	INTERGENIC
3R	19845153	3R_19845153_SNP [dm3] 3R_24019431_SNP [dm6]	C	T	9.767e^-5	0.902	INTRON KrT95D
3R	24732450	3R_24732450_SNP [dm3] 3R_28906728_SNP [dm6]	A	G	9.791e^-5	0.902	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	11051076	3L_11051076_SNP [dm3] 3L_11057976_SNP [dm6]	G	A	9.909e^-5	0.902	INTRON CG7888	TF binding site mE1_TFBS_cad
3L	10232696	3L_10232696_SNP [dm3] 3L_10239596_SNP [dm6]	T	A	9.920e^-5	0.902	UPSTREAM CR45403 INTERGENIC
3R	20356669	3R_20356669_SNP [dm3] 3R_24530947_SNP [dm6]	G	A	9.943e^-5	0.902	UPSTREAM CG13623 INTRON ana1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2513893	X_2513893_SNP [dm3] X_2619860_SNP [dm6]	A	T	1.002e^-4	0.902	UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	20724947	X_20724947_SNP [dm3] X_20853920_SNP [dm6]	C	T	1.003e^-4	0.902	INTRON shakB
2L	3220647	2L_3220647_SNP [dm3] 2L_3220647_SNP [dm6]	G	A	1.005e^-4	0.902	INTERGENIC
3L	12066166	3L_12066166_SNP [dm3] 3L_12073066_SNP [dm6]	A	G	1.005e^-4	0.902	INTRON Sema-5c
2L	14573363	2L_14573363_SNP [dm3] 2L_14573363_SNP [dm6]	T	A	1.009e^-4	0.902	INTERGENIC
2L	3598036	2L_3598036_SNP [dm3] 2L_3598036_SNP [dm6]	T	A	1.010e^-4	0.902	INTERGENIC
X	19113821	X_19113821_SNP [dm3] X_19219788_SNP [dm6]	A	C	1.011e^-4	0.902	UPSTREAM CG7884 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7934138	2L_7934138_SNP [dm3] 2L_7934138_SNP [dm6]	C	T	1.038e^-4	0.912	INTRON Snoo
2R	9271249	2R_9271249_SNP [dm3] 2R_13383744_SNP [dm6]	G	A	1.038e^-4	0.912	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16884680	X_16884680_SNP [dm3] X_16990647_SNP [dm6]	G	A	1.038e^-4	0.912	INTRON CG45002	TF binding site BDTNP1_TFBS_hb
3R	1722374	3R_1722374_SNP [dm3] 3R_5896652_SNP [dm6]	A	T	1.054e^-4	0.912	INTRON CG34113	TF binding site BDTNP1_TFBS_twi
3L	16808384	3L_16808384_SNP [dm3] 3L_16815284_SNP [dm6]	T	A	1.065e^-4	0.912	INTRON nudC & 1 other
2R	4972853	2R_4972853_SNP [dm3] 2R_9085348_SNP [dm6]	A	G	1.066e^-4	0.912	INTRON CG13742 & 1 other
3R	20355941	3R_20355941_SNP [dm3] 3R_24530219_SNP [dm6]	T	A	1.066e^-4	0.912	UPSTREAM ana1 DOWNSTREAM CG6607 INTRON CG13623	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11003326	3L_11003326_SNP [dm3] 3L_11010226_SNP [dm6]	A	G	1.070e^-4	0.912	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25164012	3R_25164012_SNP [dm3] 3R_29338290_SNP [dm6]	C	T	1.074e^-4	0.912	INTERGENIC
3L	907675	3L_907675_SNP [dm3] 3L_907675_SNP [dm6]	C	T	1.074e^-4	0.912	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13291578	2R_13291578_SNP [dm3] 2R_17404073_SNP [dm6]	G	A	1.076e^-4	0.912	SYNONYMOUS_CODING Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15153386	2L_15153386_SNP [dm3] 2L_15153386_SNP [dm6]	T	A	1.085e^-4	0.912	INTERGENIC
2R	17447576	2R_17447576_SNP [dm3] 2R_21560071_SNP [dm6]	G	T	1.088e^-4	0.912	DOWNSTREAM CG10440 & 1 other INTERGENIC
3L	16045524	3L_16045524_SNP [dm3] 3L_16052424_SNP [dm6]	T	C	1.090e^-4	0.912	INTRON Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5339990	3L_5339990_SNP [dm3] 3L_5346890_SNP [dm6]	A	T	1.101e^-4	0.917	INTRON lama
X	3867012	X_3867012_SNP [dm3] X_3972979_SNP [dm6]	G	C	1.112e^-4	0.922	DOWNSTREAM CR45481 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8223992	2L_8223992_DEL [dm3] 2L_8223992_DEL [dm6]	AA	A	1.122e^-4	0.924	INTRON Pvr
2R	4323474	2R_4323474_SNP [dm3] 2R_8435969_SNP [dm6]	G	A	1.127e^-4	0.924	UTR_3_PRIME Lcp3
X	9321517	X_9321517_SNP [dm3] X_9427484_SNP [dm6]	A	G	1.133e^-4	0.924	INTRON mgl
2R	7388303	2R_7388303_SNP [dm3] 2R_11500798_SNP [dm6]	C	T	1.134e^-4	0.924	INTRON inv
3L	15729036	3L_15729036_SNP [dm3] 3L_15735936_SNP [dm6]	C	T	1.149e^-4	0.927	INTERGENIC
2L	15381370	2L_15381370_SNP [dm3] 2L_15381370_SNP [dm6]	C	A	1.152e^-4	0.927	INTERGENIC
2R	6571089	2R_6571089_SNP [dm3] 2R_10683584_SNP [dm6]	A	G	1.153e^-4	0.927	INTRON stan
X	3797258	X_3797258_SNP [dm3] X_3903225_SNP [dm6]	T	A	1.157e^-4	0.927	INTRON CG42541
X	2573703	X_2573703_SNP [dm3] X_2679670_SNP [dm6]	G	T	1.174e^-4	0.931	DOWNSTREAM HLH3B & 1 other INTERGENIC
2L	3221400	2L_3221400_DEL [dm3] 2L_3221400_DEL [dm6]	TTTGATATTAAT...	T	1.176e^-4	0.931	INTERGENIC
3L	11653929	3L_11653929_SNP [dm3] 3L_11660829_SNP [dm6]	A	G	1.177e^-4	0.931	INTRON CG32085
2L	7606922	2L_7606922_SNP [dm3] 2L_7606922_SNP [dm6]	T	C	1.184e^-4	0.932	SYNONYMOUS_CODING Cyp4d21
X	12057978	X_12057978_SNP [dm3] X_12163945_SNP [dm6]	T	C	1.200e^-4	0.936	INTRON Ten-a
3L	2356891	3L_2356891_SNP [dm3] 3L_2356891_SNP [dm6]	T	A	1.203e^-4	0.936	INTERGENIC
2L	10258725	2L_10258725_SNP [dm3] 2L_10258725_SNP [dm6]	C	T	1.211e^-4	0.936	SPLICE_SITE_REGION Pten INTRON Pten
3R	17180957	3R_17180957_SNP [dm3] 3R_21355235_SNP [dm6]	C	A	1.213e^-4	0.936	SYNONYMOUS_CODING mod_mdg4_ UTR_3_PRIME mod_mdg4_ DOWNSTREAM pre-mod_mdg4_-K & 5 others INTRON mod_mdg4_
3L	910620	3L_910620_SNP [dm3] 3L_910620_SNP [dm6]	C	T	1.228e^-4	0.936	SYNONYMOUS_CODING nerfin-1
2L	3219394	2L_3219394_DEL [dm3] 2L_3219394_DEL [dm6]	ATTG	A	1.229e^-4	0.936	INTERGENIC
2L	10869160	2L_10869160_SNP [dm3] 2L_10869160_SNP [dm6]	A	T	1.230e^-4	0.936	INTERGENIC
2R	15842049	2R_15842049_SNP [dm3] 2R_19954544_SNP [dm6]	C	A	1.244e^-4	0.936	UTR_3_PRIME CG44622
3L	4947709	3L_4947709_SNP [dm3] 3L_4947709_SNP [dm6]	C	T	1.249e^-4	0.936	INTRON Con
X	17212324	X_17212324_SNP [dm3] X_17318291_SNP [dm6]	C	T	1.254e^-4	0.936	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15931321	3R_15931321_SNP [dm3] 3R_20105599_SNP [dm6]	T	C	1.264e^-4	0.936	INTERGENIC
3R	9894750	3R_9894750_SNP [dm3] 3R_14069028_SNP [dm6]	G	A	1.264e^-4	0.936	INTRON foxo
2L	8993501	2L_8993501_SNP [dm3] 2L_8993501_SNP [dm6]	T	A	1.275e^-4	0.936	UTR_3_PRIME CG9555 UPSTREAM CG17906 DOWNSTREAM alien
2L	6186688	2L_6186688_SNP [dm3] 2L_6186688_SNP [dm6]	C	T	1.275e^-4	0.936	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	20781729	3L_20781729_INS [dm3] 3L_20788629_INS [dm6]	A	ATAAAAGCAAA...	1.277e^-4	0.936	UPSTREAM CG11396 DOWNSTREAM Six4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20356642	3R_20356642_SNP [dm3] 3R_24530920_SNP [dm6]	T	G	1.279e^-4	0.936	UPSTREAM CG13623 INTRON ana1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9071959	2L_9071959_SNP [dm3] 2L_9071959_SNP [dm6]	A	C	1.285e^-4	0.936	UPSTREAM CG31708 DOWNSTREAM CR44483 INTERGENIC
3R	11945682	3R_11945682_SNP [dm3] 3R_16119960_SNP [dm6]	C	G	1.286e^-4	0.936	INTRON Sb	TF binding site mE1_TFBS_chinmo
3L	2524080	3L_2524080_SNP [dm3] 3L_2524080_SNP [dm6]	T	A	1.294e^-4	0.936	INTRON Spn	TF binding site mE1_TFBS_inv
2L	3221548	2L_3221548_SNP [dm3] 2L_3221548_SNP [dm6]	G	A	1.296e^-4	0.936	INTERGENIC
2L	9129746	2L_9129746_SNP [dm3] 2L_9129746_SNP [dm6]	A	G	1.307e^-4	0.936	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14491474	2R_14491474_SNP [dm3] 2R_18603969_SNP [dm6]	C	T	1.310e^-4	0.936	INTRON GEFmeso	TF binding site mE1_TFBS_inv
X	2573670	X_2573670_SNP [dm3] X_2679637_SNP [dm6]	T	G	1.332e^-4	0.936	DOWNSTREAM HLH3B & 1 other INTERGENIC
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	1.336e^-4	0.936	INTERGENIC
X	21203948	X_21203948_SNP [dm3] X_21332921_SNP [dm6]	G	A	1.338e^-4	0.936	DOWNSTREAM tty INTRON tty	TF binding site mE1_TFBS_cad
2R	3204195	2R_3204195_SNP [dm3] 2R_7316690_SNP [dm6]	C	G	1.353e^-4	0.936	INTERGENIC
3L	11852108	3L_11852108_SNP [dm3] 3L_11859008_SNP [dm6]	A	T	1.376e^-4	0.936	INTRON CG44837
3L	17924744	3L_17924744_SNP [dm3] 3L_17931644_SNP [dm6]	G	A	1.393e^-4	0.936	INTERGENIC
3L	9872957	3L_9872957_SNP [dm3] 3L_9879857_SNP [dm6]	C	G	1.404e^-4	0.936	INTRON CG34382
3L	3853025	3L_3853025_SNP [dm3] 3L_3853025_SNP [dm6]	A	G	1.411e^-4	0.936	INTRON Awh
3R	25333963	3R_25333963_SNP [dm3] 3R_29508241_SNP [dm6]	G	T	1.414e^-4	0.936	INTERGENIC
3L	14433193	3L_14433193_SNP [dm3] 3L_14440093_SNP [dm6]	C	A	1.426e^-4	0.936	INTRON bbg
2L	9038260	2L_9038260_SNP [dm3] 2L_9038260_SNP [dm6]	G	T	1.428e^-4	0.936	INTERGENIC
3L	8009888	3L_8009888_SNP [dm3] 3L_8016788_SNP [dm6]	T	C	1.429e^-4	0.936	INTRON nmo
3L	5721131	3L_5721131_SNP [dm3] 3L_5728031_SNP [dm6]	T	A	1.432e^-4	0.936	INTRON sif
3R	10901777	3R_10901777_SNP [dm3] 3R_15076055_SNP [dm6]	A	C	1.436e^-4	0.936	INTRON dpr9
3L	12416958	3L_12416958_SNP [dm3] 3L_12423858_SNP [dm6]	G	A	1.440e^-4	0.936	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22195291	3L_22195291_SNP [dm3] 3L_22202191_SNP [dm6]	C	G	1.441e^-4	0.936	INTRON olf413
2R	16558035	2R_16558035_SNP [dm3] 2R_20670530_SNP [dm6]	A	G	1.459e^-4	0.936	UPSTREAM CG30152 & 1 other INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8845437	3L_8845437_SNP [dm3] 3L_8852337_SNP [dm6]	A	T	1.465e^-4	0.936	INTRON dally	TF binding site mE1_TFBS_HSA
3L	12900543	3L_12900543_SNP [dm3] 3L_12907443_SNP [dm6]	C	T	1.466e^-4	0.936	INTERGENIC
3L	3794133	3L_3794133_DEL [dm3] 3L_3794133_DEL [dm6]	CC	C	1.479e^-4	0.936	INTRON CG32264
2R	6126821	2R_6126821_SNP [dm3] 2R_10239316_SNP [dm6]	A	T	1.484e^-4	0.936	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10116355	2R_10116355_SNP [dm3] 2R_14228850_SNP [dm6]	A	G	1.504e^-4	0.936	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25207128	3R_25207128_SNP [dm3] 3R_29381406_SNP [dm6]	A	C	1.512e^-4	0.936	INTRON Ptp99A
2L	20967375	2L_20967375_SNP [dm3] 2L_20967375_SNP [dm6]	A	G	1.549e^-4	0.936	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3R	21713643	3R_21713643_SNP [dm3] 3R_25887921_SNP [dm6]	A	C	1.559e^-4	0.936	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
2L	10497867	2L_10497867_SNP [dm3] 2L_10497867_SNP [dm6]	C	T	1.562e^-4	0.936	SYNONYMOUS_CODING Myo31DF
2L	20422605	2L_20422605_SNP [dm3] 2L_20422605_SNP [dm6]	C	A	1.567e^-4	0.936	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-525i & 3 others	TF binding site mE1_TFBS_kn
2L	18576524	2L_18576524_SNP [dm3] 2L_18576524_SNP [dm6]	C	T	1.585e^-4	0.936	INTRON Pde11
2L	6753546	2L_6753546_SNP [dm3] 2L_6753546_SNP [dm6]	A	C	1.593e^-4	0.936	INTRON CG11221
3L	11184324	3L_11184324_SNP [dm3] 3L_11191224_SNP [dm6]	A	G	1.594e^-4	0.936	INTRON GlcAT-P
X	11940161	X_11940161_DEL [dm3] X_12046128_DEL [dm6]	AA	A	1.611e^-4	0.936	INTRON CR43960 & 1 other
3R	24736125	3R_24736125_SNP [dm3] 3R_28910403_SNP [dm6]	G	A	1.613e^-4	0.936	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17425940	3R_17425940_SNP [dm3] 3R_21600218_SNP [dm6]	C	G	1.616e^-4	0.936	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
2L	3903744	2L_3903744_SNP [dm3] 2L_3903744_SNP [dm6]	A	G	1.619e^-4	0.936	UTR_3_PRIME fred UPSTREAM capu
2L	5945189	2L_5945189_SNP [dm3] 2L_5945189_SNP [dm6]	C	G	1.621e^-4	0.936	INTRON Gpdh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14566336	2L_14566336_SNP [dm3] 2L_14566336_SNP [dm6]	C	G	1.623e^-4	0.936	INTERGENIC
2L	6569047	2L_6569047_SNP [dm3] 2L_6569047_SNP [dm6]	G	A	1.630e^-4	0.936	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	1.632e^-4	0.936	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	1.632e^-4	0.936	INTERGENIC
X	14399033	X_14399033_SNP [dm3] X_14505000_SNP [dm6]	T	G	1.635e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6687361	2L_6687361_SNP [dm3] 2L_6687361_SNP [dm6]	A	G	1.640e^-4	0.936	SYNONYMOUS_CODING Tsp UPSTREAM CG11327	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18651486	3R_18651486_SNP [dm3] 3R_22825764_SNP [dm6]	T	A	1.641e^-4	0.936	EXON CR44350
2R	13783231	2R_13783231_SNP [dm3] 2R_17895726_SNP [dm6]	G	T	1.643e^-4	0.936	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
2L	14330558	2L_14330558_SNP [dm3] 2L_14330558_SNP [dm6]	G	T	1.657e^-4	0.936	NON_SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
2L	14593285	2L_14593285_SNP [dm3] 2L_14593285_SNP [dm6]	C	G	1.658e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19462101	2R_19462101_SNP [dm3] 2R_23574578_SNP [dm6]	A	T	1.659e^-4	0.936	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18857052	3L_18857052_INS [dm3] 3L_18863952_INS [dm6]	G	GG	1.659e^-4	0.936	UPSTREAM CG6865 INTRON CG6865
2L	10912351	2L_10912351_SNP [dm3] 2L_10912351_SNP [dm6]	A	G	1.663e^-4	0.936	INTERGENIC
2R	19676949	2R_19676949_SNP [dm3] 2R_23789426_SNP [dm6]	A	T	1.671e^-4	0.936	INTRON CG9850
X	5902225	X_5902225_DEL [dm3] X_6008192_DEL [dm6]	AA	A	1.671e^-4	0.936	UTR_3_PRIME mab-21
2R	15228583	2R_15228583_SNP [dm3] 2R_19341078_SNP [dm6]	G	A	1.677e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
X	21465868	X_21465868_SNP [dm3] X_21594841_SNP [dm6]	A	T	1.681e^-4	0.936	INTERGENIC
X	4831509	X_4831509_SNP [dm3] X_4937476_SNP [dm6]	G	A	1.682e^-4	0.936	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18098561	2R_18098561_SNP [dm3] 2R_22211056_SNP [dm6]	T	G	1.697e^-4	0.936	UPSTREAM CG11291 & 1 other INTERGENIC
2L	12512068	2L_12512068_SNP [dm3] 2L_12512068_SNP [dm6]	T	C	1.698e^-4	0.936	INTRON bun
2L	17318873	2L_17318873_SNP [dm3] 2L_17318873_SNP [dm6]	C	T	1.705e^-4	0.936	DOWNSTREAM CR45696 INTERGENIC
3L	17127973	3L_17127973_SNP [dm3] 3L_17134873_SNP [dm6]	G	A	1.706e^-4	0.936	INTRON Rbp6
3R	10202118	3R_10202118_SNP [dm3] 3R_14376396_SNP [dm6]	G	A	1.706e^-4	0.936	EXON CR44943
3R	14812698	3R_14812698_SNP [dm3] 3R_18986976_SNP [dm6]	T	C	1.708e^-4	0.936	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20815058	2L_20815058_SNP [dm3] 2L_20815058_SNP [dm6]	T	C	1.708e^-4	0.936	SYNONYMOUS_CODING CG33322 DOWNSTREAM CG9328	TF binding site mE1_TFBS_sens
2R	6965048	2R_6965048_SNP [dm3] 2R_11077543_SNP [dm6]	G	A	1.715e^-4	0.936	INTRON luna	TF binding site mE1_TFBS_HSA
3L	16043930	3L_16043930_INS [dm3] 3L_16050830_INS [dm6]	T	TT	1.718e^-4	0.936	UTR_5_PRIME th UPSTREAM th DOWNSTREAM CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	12057984	X_12057984_SNP [dm3] X_12163951_SNP [dm6]	A	T	1.719e^-4	0.936	INTRON Ten-a
3L	1641302	3L_1641302_SNP [dm3] 3L_1641302_SNP [dm6]	G	A	1.722e^-4	0.936	SYNONYMOUS_CODING alphaCOP DOWNSTREAM Bgb	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20227204	2L_20227204_SNP [dm3] 2L_20227204_SNP [dm6]	A	C	1.722e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7932211	2L_7932211_SNP [dm3] 2L_7932211_SNP [dm6]	G	A	1.724e^-4	0.936	INTRON Snoo
2L	15268792	2L_15268792_SNP [dm3] 2L_15268792_SNP [dm6]	C	G	1.724e^-4	0.936	INTRON Cul3
X	4198767	X_4198767_SNP [dm3] X_4304734_SNP [dm6]	T	A	1.727e^-4	0.936	INTERGENIC
3R	7053757	3R_7053757_SNP [dm3] 3R_11228035_SNP [dm6]	C	T	1.739e^-4	0.936	SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11301330	2R_11301330_SNP [dm3] 2R_15413825_SNP [dm6]	G	A	1.746e^-4	0.936	INTRON CG43729
2R	12613067	2R_12613067_SNP [dm3] 2R_16725562_SNP [dm6]	G	T	1.750e^-4	0.936	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14788110	2L_14788110_SNP [dm3] 2L_14788110_SNP [dm6]	G	A	1.751e^-4	0.936	INTERGENIC
3L	4026215	3L_4026215_SNP [dm3] 3L_4026215_SNP [dm6]	G	T	1.754e^-4	0.936	UPSTREAM CG11594 & 1 other INTERGENIC
2L	14549589	2L_14549589_SNP [dm3] 2L_14549589_SNP [dm6]	A	G	1.761e^-4	0.936	UPSTREAM CG4218 DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
X	14046420	X_14046420_INS [dm3] X_14152387_INS [dm6]	A	AT	1.766e^-4	0.936	UPSTREAM CG12479 INTERGENIC
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	1.766e^-4	0.936	INTRON sfl
3R	18579996	3R_18579996_SNP [dm3] 3R_22754274_SNP [dm6]	G	A	1.772e^-4	0.936	UPSTREAM CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17535104	2L_17535104_SNP [dm3] 2L_17535104_SNP [dm6]	T	C	1.785e^-4	0.936	INTERGENIC
X	13695931	X_13695931_SNP [dm3] X_13801898_SNP [dm6]	A	G	1.785e^-4	0.936	SPLICE_SITE_REGION inaE INTRON inaE
3R	23432339	3R_23432339_SNP [dm3] 3R_27606617_SNP [dm6]	A	G	1.793e^-4	0.936	INTRON dsd
2R	14489231	2R_14489231_DEL [dm3] 2R_18601726_DEL [dm6]	TCCCGCATT	T	1.798e^-4	0.936	INTRON GEFmeso
X	2629679	X_2629679_SNP [dm3] X_2735646_SNP [dm6]	C	T	1.799e^-4	0.936	SYNONYMOUS_CODING crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2426390	3L_2426390_SNP [dm3] 3L_2426390_SNP [dm6]	C	T	1.802e^-4	0.936	INTRON CG45186	TF binding site mE1_TFBS_bab1
3R	14805453	3R_14805453_SNP [dm3] 3R_18979731_SNP [dm6]	C	T	1.807e^-4	0.936	SYNONYMOUS_CODING Smu1 UPSTREAM CG12269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20225494	X_20225494_SNP [dm3] X_20354467_SNP [dm6]	C	G	1.809e^-4	0.936	INTERGENIC
3L	1643318	3L_1643318_SNP [dm3] 3L_1643318_SNP [dm6]	G	A	1.810e^-4	0.936	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9526636	2R_9526636_SNP [dm3] 2R_13639131_SNP [dm6]	A	C	1.811e^-4	0.936	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1652309	3L_1652309_SNP [dm3] 3L_1652309_SNP [dm6]	G	C	1.814e^-4	0.936	UPSTREAM CG7970 DOWNSTREAM CG13920 INTRON CG7967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5487171	3L_5487171_SNP [dm3] 3L_5494071_SNP [dm6]	T	A	1.817e^-4	0.936	EXON CR44520
3L	20037722	3L_20037722_SNP [dm3] 3L_20044622_SNP [dm6]	G	A	1.819e^-4	0.936	INTERGENIC
3L	20037747	3L_20037747_SNP [dm3] 3L_20044647_SNP [dm6]	G	T	1.819e^-4	0.936	INTERGENIC
3L	8827008	3L_8827008_SNP [dm3] 3L_8833908_SNP [dm6]	T	C	1.819e^-4	0.936	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10901781	3R_10901781_SNP [dm3] 3R_15076059_SNP [dm6]	A	T	1.823e^-4	0.936	INTRON dpr9
2R	6127523	2R_6127523_SNP [dm3] 2R_10240018_SNP [dm6]	A	T	1.824e^-4	0.936	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21465858	X_21465858_SNP [dm3] X_21594831_SNP [dm6]	C	A	1.830e^-4	0.936	INTERGENIC
3L	13855284	3L_13855284_SNP [dm3] 3L_13862184_SNP [dm6]	T	A	1.836e^-4	0.936	INTRON CG8745
2R	18088078	2R_18088078_SNP [dm3] 2R_22200573_SNP [dm6]	A	G	1.841e^-4	0.936	UPSTREAM CR45376 INTRON Swim
3L	5487514	3L_5487514_SNP [dm3] 3L_5494414_SNP [dm6]	C	A	1.866e^-4	0.936	EXON CR44520
2R	7056928	2R_7056928_SNP [dm3] 2R_11169423_SNP [dm6]	G	A	1.870e^-4	0.936	INTRON shn & 1 other
2L	10349212	2L_10349212_SNP [dm3] 2L_10349212_SNP [dm6]	G	T	1.872e^-4	0.936	INTRON CG34367
3R	24996369	3R_24996369_INS [dm3] 3R_29170647_INS [dm6]	A	AGG	1.873e^-4	0.936	DOWNSTREAM CG14509 INTRON CG11898
2L	6620195	2L_6620195_SNP [dm3] 2L_6620195_SNP [dm6]	T	C	1.878e^-4	0.936	DOWNSTREAM CR44913 INTRON CG11320
2R	6863920	2R_6863920_DEL [dm3] 2R_10976415_DEL [dm6]	GCCGGGAACACAAATGATGA...	A	1.883e^-4	0.936	INTERGENIC
X	15718168	X_15718168_SNP [dm3] X_15824135_SNP [dm6]	T	C	1.884e^-4	0.936	SYNONYMOUS_CODING sd	TF binding site mE1_TFBS_sens
3R	26494722	3R_26494722_SNP [dm3] 3R_30669000_SNP [dm6]	A	T	1.887e^-4	0.936	INTERGENIC
2L	17535142	2L_17535142_SNP [dm3] 2L_17535142_SNP [dm6]	G	C	1.890e^-4	0.936	INTERGENIC
2L	14573313	2L_14573313_SNP [dm3] 2L_14573313_SNP [dm6]	C	T	1.890e^-4	0.936	INTERGENIC
3R	26737586	3R_26737586_SNP [dm3] 3R_30911864_SNP [dm6]	A	C	1.898e^-4	0.936	UPSTREAM Ptx1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9995297	2L_9995297_SNP [dm3] 2L_9995297_SNP [dm6]	C	A	1.898e^-4	0.936	UTR_3_PRIME bib DOWNSTREAM CG31875
2L	14573367	2L_14573367_SNP [dm3] 2L_14573367_SNP [dm6]	G	A	1.909e^-4	0.936	INTERGENIC
3R	14618842	3R_14618842_SNP [dm3] 3R_18793120_SNP [dm6]	A	G	1.913e^-4	0.936	UPSTREAM CG7720 INTRON CG7720
3L	7439071	3L_7439071_SNP [dm3] 3L_7445971_SNP [dm6]	C	T	1.919e^-4	0.936	INTRON CG42458
3L	12066162	3L_12066162_SNP [dm3] 3L_12073062_SNP [dm6]	T	G	1.930e^-4	0.936	INTRON Sema-5c
3R	20393361	3R_20393361_SNP [dm3] 3R_24567639_SNP [dm6]	T	A	1.930e^-4	0.936	INTRON CG13624	TF binding site mE1_TFBS_cnc
3R	21585006	3R_21585006_SNP [dm3] 3R_25759284_SNP [dm6]	C	A	1.933e^-4	0.936	SPLICE_SITE_REGION LpR1 UTR_5_PRIME LpR1 INTRON LpR1
3R	20356323	3R_20356323_SNP [dm3] 3R_24530601_SNP [dm6]	C	T	1.935e^-4	0.936	UTR_5_PRIME ana1 UPSTREAM ana1 & 1 other DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	911357	3L_911357_SNP [dm3] 3L_911357_SNP [dm6]	A	G	1.941e^-4	0.936	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
2L	1851011	2L_1851011_SNP [dm3] 2L_1851011_SNP [dm6]	G	C	1.947e^-4	0.936	INTRON wry
2R	17055993	2R_17055993_SNP [dm3] 2R_21168488_SNP [dm6]	A	G	1.950e^-4	0.936	UTR_5_PRIME CG4266 UPSTREAM hng1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	19753845	X_19753845_SNP [dm3] X_19859812_SNP [dm6]	C	T	1.954e^-4	0.936	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad
2R	8370865	2R_8370865_SNP [dm3] 2R_12483360_SNP [dm6]	A	T	1.962e^-4	0.936	INTRON Dh44-R2
2L	14566335	2L_14566335_SNP [dm3] 2L_14566335_SNP [dm6]	A	G	1.969e^-4	0.936	INTERGENIC
2L	16844558	2L_16844558_SNP [dm3] 2L_16844558_SNP [dm6]	C	A	1.971e^-4	0.936	SYNONYMOUS_CODING CG13284
3L	13870082	3L_13870082_SNP [dm3] 3L_13876982_SNP [dm6]	A	C	1.971e^-4	0.936	INTRON dysc
3R	12924337	3R_12924337_INS [dm3] 3R_17098615_INS [dm6]	G	GTACGATCTTG...	1.977e^-4	0.936	UTR_5_PRIME cher INTRON cher
3R	21067160	3R_21067160_SNP [dm3] 3R_25241438_SNP [dm6]	T	C	1.985e^-4	0.936	UTR_3_PRIME to UPSTREAM CG11854	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7243399	X_7243399_SNP [dm3] X_7349366_SNP [dm6]	A	T	1.990e^-4	0.936	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8489998	2R_8489998_SNP [dm3] 2R_12602493_SNP [dm6]	A	G	1.993e^-4	0.936	INTRON Amph
2L	8999866	2L_8999866_DEL [dm3] 2L_8999866_DEL [dm6]	AG	T	1.997e^-4	0.936	DOWNSTREAM Try29F INTERGENIC
2R	21010463	2R_21010463_SNP [dm3] 2R_25122940_SNP [dm6]	A	G	2.001e^-4	0.936	INTRON lov
3R	8136307	3R_8136307_SNP [dm3] 3R_12310585_SNP [dm6]	C	A	2.011e^-4	0.936	UPSTREAM CG4066 INTERGENIC
2R	15703750	2R_15703750_SNP [dm3] 2R_19816245_SNP [dm6]	C	T	2.032e^-4	0.936	DOWNSTREAM Obp56h INTERGENIC
3R	26722952	3R_26722952_SNP [dm3] 3R_30897230_SNP [dm6]	G	C	2.034e^-4	0.936	INTRON Cyp4c3
X	21121052	X_21121052_INS [dm3] X_21250025_INS [dm6]	T	TAT	2.035e^-4	0.936	UTR_3_PRIME CG1722 INTRON CG32521
X	7434902	X_7434902_SNP [dm3] X_7540869_SNP [dm6]	T	A	2.052e^-4	0.936	INTRON CG32719
3R	17728516	3R_17728516_SNP [dm3] 3R_21902794_SNP [dm6]	C	A	2.052e^-4	0.936	INTRON CG6678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19569890	2R_19569890_SNP [dm3] 2R_23682367_SNP [dm6]	G	C	2.057e^-4	0.936	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11792394	2R_11792394_SNP [dm3] 2R_15904889_SNP [dm6]	C	T	2.073e^-4	0.936	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	10865353	2L_10865353_SNP [dm3] 2L_10865353_SNP [dm6]	G	A	2.083e^-4	0.936	UPSTREAM CR43807 INTERGENIC
3L	1652287	3L_1652287_SNP [dm3] 3L_1652287_SNP [dm6]	G	A	2.091e^-4	0.936	UPSTREAM CG7970 DOWNSTREAM CG13920 INTRON CG7967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3303568	X_3303568_SNP [dm3] X_3409535_SNP [dm6]	T	C	2.092e^-4	0.936	INTRON CR44999 & 1 other
3R	22687667	3R_22687667_SNP [dm3] 3R_26861945_SNP [dm6]	A	T	2.097e^-4	0.936	UPSTREAM mir-1012 INTRON Lerp
2L	20379992	2L_20379992_INS [dm3] 2L_20379992_INS [dm6]	G	GG	2.116e^-4	0.936	INTRON CG16798
2L	9015021	2L_9015021_SNP [dm3] 2L_9015021_SNP [dm6]	C	G	2.126e^-4	0.936	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1651694	3L_1651694_SNP [dm3] 3L_1651694_SNP [dm6]	C	T	2.133e^-4	0.936	SYNONYMOUS_CODING CG7967 DOWNSTREAM CG13920	TF binding site mE1_TFBS_cad
2R	5682095	2R_5682095_SNP [dm3] 2R_9794590_SNP [dm6]	C	T	2.145e^-4	0.936	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
X	21465783	X_21465783_SNP [dm3] X_21594756_SNP [dm6]	G	C	2.146e^-4	0.936	INTERGENIC
3L	20690760	3L_20690760_SNP [dm3] 3L_20697660_SNP [dm6]	G	A	2.153e^-4	0.936	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20010036	2R_20010036_SNP [dm3] 2R_24122513_SNP [dm6]	G	C	2.155e^-4	0.936	UTR_3_PRIME CG3257 DOWNSTREAM CG43775 & 2 others
3R	11905128	3R_11905128_SNP [dm3] 3R_16079406_SNP [dm6]	C	T	2.156e^-4	0.936	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	2785945	2R_2785945_SNP [dm3] 2R_6898440_SNP [dm6]	A	G	2.159e^-4	0.936	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3R	12275481	3R_12275481_SNP [dm3] 3R_16449759_SNP [dm6]	A	G	2.159e^-4	0.936	INTRON Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1067896	2R_1067896_SNP [dm3] 2R_5180391_SNP [dm6]	C	T	2.161e^-4	0.936	INTRON Nipped-A
2L	20942194	2L_20942194_SNP [dm3] 2L_20942194_SNP [dm6]	C	A	2.164e^-4	0.936	INTERGENIC
X	11175691	X_11175691_SNP [dm3] X_11281658_SNP [dm6]	G	A	2.166e^-4	0.936	INTRON CG44422
2L	15493295	2L_15493295_INS [dm3] 2L_15493295_INS [dm6]	T	TTCCC	2.169e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	4831102	X_4831102_MNP [dm3] X_4937069_MNP [dm6]	CACACA	TGTGTG	2.183e^-4	0.936	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20707700	X_20707700_SNP [dm3] X_20836673_SNP [dm6]	T	C	2.183e^-4	0.936	INTRON shakB
2L	6030714	2L_6030714_SNP [dm3] 2L_6030714_SNP [dm6]	T	C	2.183e^-4	0.936	INTRON CG9109
X	4822230	X_4822230_SNP [dm3] X_4928197_SNP [dm6]	A	T	2.185e^-4	0.936	INTRON CG44774	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7105763	X_7105763_SNP [dm3] X_7211730_SNP [dm6]	T	A	2.190e^-4	0.936	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
X	21077037	X_21077037_SNP [dm3] X_21206010_SNP [dm6]	T	C	2.191e^-4	0.936	SYNONYMOUS_CODING CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14616644	3L_14616644_SNP [dm3] 3L_14623544_SNP [dm6]	T	C	2.199e^-4	0.936	INTRON CG9628	TF binding site mE1_TFBS_Trl
2L	15142269	2L_15142269_SNP [dm3] 2L_15142269_SNP [dm6]	T	A	2.204e^-4	0.936	INTERGENIC
3L	12070018	3L_12070018_SNP [dm3] 3L_12076918_SNP [dm6]	A	T	2.213e^-4	0.936	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
2L	20293866	2L_20293866_SNP [dm3] 2L_20293866_SNP [dm6]	T	G	2.214e^-4	0.936	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21585668	3R_21585668_SNP [dm3] 3R_25759946_SNP [dm6]	A	C	2.219e^-4	0.936	INTRON LpR1
3R	1392417	3R_1392417_SNP [dm3] 3R_5566695_SNP [dm6]	A	G	2.220e^-4	0.936	SYNONYMOUS_CODING CG12746 DOWNSTREAM CG2931
3R	4772808	3R_4772808_SNP [dm3] 3R_8947086_SNP [dm6]	G	C	2.221e^-4	0.936	INTERGENIC
2L	17535548	2L_17535548_SNP [dm3] 2L_17535548_SNP [dm6]	C	A	2.225e^-4	0.936	INTERGENIC
2R	15228599	2R_15228599_SNP [dm3] 2R_19341094_SNP [dm6]	T	A	2.226e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
2R	15228602	2R_15228602_SNP [dm3] 2R_19341097_SNP [dm6]	A	T	2.226e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
2L	13053922	2L_13053922_SNP [dm3] 2L_13053922_SNP [dm6]	G	A	2.227e^-4	0.936	INTRON CG9932
3L	10554221	3L_10554221_SNP [dm3] 3L_10561121_SNP [dm6]	T	C	2.229e^-4	0.936	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9046130	2L_9046130_SNP [dm3] 2L_9046130_SNP [dm6]	G	T	2.230e^-4	0.936	INTERGENIC
2L	3221706	2L_3221706_SNP [dm3] 2L_3221706_SNP [dm6]	C	G	2.232e^-4	0.936	INTERGENIC
3R	20355675	3R_20355675_SNP [dm3] 3R_24529953_SNP [dm6]	G	A	2.238e^-4	0.936	SYNONYMOUS_CODING CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	4958864	3R_4958864_SNP [dm3] 3R_9133142_SNP [dm6]	T	A	2.244e^-4	0.936	INTRON pum
3L	11007098	3L_11007098_SNP [dm3] 3L_11013998_SNP [dm6]	G	T	2.245e^-4	0.936	INTERGENIC
2R	14462902	2R_14462902_SNP [dm3] 2R_18575397_SNP [dm6]	C	T	2.247e^-4	0.936	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7105768	X_7105768_SNP [dm3] X_7211735_SNP [dm6]	C	T	2.253e^-4	0.936	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	17279330	2R_17279330_SNP [dm3] 2R_21391825_SNP [dm6]	G	T	2.253e^-4	0.936	DOWNSTREAM Sdc INTRON Acox57D-d	TF binding site mE1_TFBS_cad
2L	7166644	2L_7166644_SNP [dm3] 2L_7166644_SNP [dm6]	A	G	2.254e^-4	0.936	INTERGENIC
3L	18626414	3L_18626414_SNP [dm3] 3L_18633314_SNP [dm6]	C	T	2.256e^-4	0.936	INTRON MYPT-75D
3R	24487240	3R_24487240_SNP [dm3] 3R_28661518_SNP [dm6]	C	T	2.273e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6878261	2R_6878261_SNP [dm3] 2R_10990756_SNP [dm6]	G	A	2.274e^-4	0.936	SYNONYMOUS_CODING luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14173555	3R_14173555_SNP [dm3] 3R_18347833_SNP [dm6]	G	A	2.275e^-4	0.936	INTRON CG15803
3R	14173558	3R_14173558_SNP [dm3] 3R_18347836_SNP [dm6]	T	A	2.275e^-4	0.936	INTRON CG15803
3R	21583687	3R_21583687_SNP [dm3] 3R_25757965_SNP [dm6]	G	A	2.276e^-4	0.936	INTRON LpR1
3L	5787450	3L_5787450_SNP [dm3] 3L_5794350_SNP [dm6]	T	G	2.293e^-4	0.936	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18576554	2L_18576554_SNP [dm3] 2L_18576554_SNP [dm6]	C	A	2.308e^-4	0.936	INTRON Pde11
2L	17638986	2L_17638986_SNP [dm3] 2L_17638986_SNP [dm6]	A	T	2.309e^-4	0.936	INTERGENIC
2L	15174604	2L_15174604_SNP [dm3] 2L_15174604_SNP [dm6]	T	A	2.322e^-4	0.936	INTRON CG4168
2L	5259248	2L_5259248_SNP [dm3] 2L_5259248_SNP [dm6]	G	A	2.323e^-4	0.936	INTRON tkv EXON CR44744	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17770484	2L_17770484_SNP [dm3] 2L_17770484_SNP [dm6]	C	T	2.326e^-4	0.936	INTRON CadN
3R	5750491	3R_5750491_SNP [dm3] 3R_9924769_SNP [dm6]	G	A	2.327e^-4	0.936	INTRON Glut4EF
X	21464643	X_21464643_SNP [dm3] X_21593616_SNP [dm6]	G	C	2.328e^-4	0.936	INTERGENIC
2R	2877700	2R_2877700_SNP [dm3] 2R_6990195_SNP [dm6]	T	A	2.331e^-4	0.936	INTERGENIC	transposable element FlyBase
3R	2800936	3R_2800936_INS [dm3] 3R_6975214_INS [dm6]	G	GAAT	2.335e^-4	0.936	INTRON Antp
X	19166960	X_19166960_INS [dm3] X_19272927_INS [dm6]	T	TTCG	2.339e^-4	0.936	UTR_3_PRIME Vav DOWNSTREAM Vav & 1 other	TF binding site mE1_TFBS_zfh1
3R	21577562	3R_21577562_SNP [dm3] 3R_25751840_SNP [dm6]	C	A	2.339e^-4	0.936	INTRON LpR1
2L	15505776	2L_15505776_SNP [dm3] 2L_15505776_SNP [dm6]	G	C	2.342e^-4	0.936	DOWNSTREAM lace INTERGENIC
3L	11998979	3L_11998979_SNP [dm3] 3L_12005879_SNP [dm6]	C	A	2.343e^-4	0.936	INTRON CG6928
3R	13382708	3R_13382708_SNP [dm3] 3R_17556986_SNP [dm6]	G	A	2.347e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11900467	3R_11900467_SNP [dm3] 3R_16074745_SNP [dm6]	G	A	2.351e^-4	0.936	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14573372	2L_14573372_MNP [dm3] 2L_14573372_MNP [dm6]	TGT	ATG	2.351e^-4	0.936	INTERGENIC
2L	6804472	2L_6804472_SNP [dm3] 2L_6804472_SNP [dm6]	G	A	2.354e^-4	0.936	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25759391	3R_25759391_SNP [dm3] 3R_29933669_SNP [dm6]	A	C	2.356e^-4	0.936	NON_SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18019832	2R_18019832_DEL [dm3] 2R_22132327_DEL [dm6]	TGTGGACTTTACATAACTTT...	T	2.370e^-4	0.936	INTERGENIC
2L	9080426	2L_9080426_SNP [dm3] 2L_9080426_SNP [dm6]	C	T	2.383e^-4	0.936	INTERGENIC
2R	8921860	2R_8921860_SNP [dm3] 2R_13034355_SNP [dm6]	A	T	2.398e^-4	0.936	INTERGENIC
3R	14134094	3R_14134094_SNP [dm3] 3R_18308372_SNP [dm6]	G	A	2.401e^-4	0.936	INTRON PKD
2R	2786668	2R_2786668_SNP [dm3] 2R_6899163_SNP [dm6]	T	A	2.407e^-4	0.936	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3L	2377912	3L_2377912_SNP [dm3] 3L_2377912_SNP [dm6]	C	T	2.413e^-4	0.936	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17657438	2R_17657438_SNP [dm3] 2R_21769933_SNP [dm6]	A	T	2.434e^-4	0.936	INTRON CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14004043	2L_14004043_SNP [dm3] 2L_14004043_SNP [dm6]	A	T	2.436e^-4	0.936	INTERGENIC
2L	13104688	2L_13104688_SNP [dm3] 2L_13104688_SNP [dm6]	T	C	2.440e^-4	0.936	EXON CR45461
2R	8934022	2R_8934022_SNP [dm3] 2R_13046517_SNP [dm6]	A	T	2.449e^-4	0.936	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
X	7105769	X_7105769_SNP [dm3] X_7211736_SNP [dm6]	A	C	2.449e^-4	0.936	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	13831933	2R_13831933_SNP [dm3] 2R_17944428_SNP [dm6]	T	C	2.454e^-4	0.936	INTERGENIC
2L	20293863	2L_20293863_SNP [dm3] 2L_20293863_SNP [dm6]	T	A	2.457e^-4	0.936	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18101800	2R_18101800_SNP [dm3] 2R_22214295_SNP [dm6]	T	C	2.460e^-4	0.936	INTRON ari-2	TF binding site BDTNP1_TFBS_dl
2R	18019864	2R_18019864_DEL [dm3] 2R_22132359_DEL [dm6]	GGTAGTCC	G	2.461e^-4	0.936	INTERGENIC
3L	11007191	3L_11007191_SNP [dm3] 3L_11014091_SNP [dm6]	T	C	2.466e^-4	0.936	INTERGENIC
X	21495236	X_21495236_SNP [dm3] X_21624209_SNP [dm6]	G	A	2.468e^-4	0.936	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	19717236	X_19717236_SNP [dm3] X_19823203_SNP [dm6]	C	A	2.472e^-4	0.936	DOWNSTREAM skpE INTERGENIC
2L	8999857	2L_8999857_SNP [dm3] 2L_8999857_SNP [dm6]	A	C	2.486e^-4	0.936	DOWNSTREAM Try29F INTERGENIC
3R	14059264	3R_14059264_SNP [dm3] 3R_18233542_SNP [dm6]	A	G	2.487e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs
3R	20358922	3R_20358922_SNP [dm3] 3R_24533200_SNP [dm6]	G	A	2.501e^-4	0.936	SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_cad
3L	4141546	3L_4141546_SNP [dm3] 3L_4141546_SNP [dm6]	A	T	2.502e^-4	0.936	UTR_5_PRIME Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
2R	7986868	2R_7986868_INS [dm3] 2R_12099363_INS [dm6]	G	GAGAGAG	2.511e^-4	0.936	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2377474	3L_2377474_SNP [dm3] 3L_2377474_SNP [dm6]	G	A	2.513e^-4	0.936	UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2377487	3L_2377487_INS [dm3] 3L_2377487_INS [dm6]	A	TC	2.513e^-4	0.936	UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10258700	2L_10258700_SNP [dm3] 2L_10258700_SNP [dm6]	A	T	2.517e^-4	0.936	INTRON Pten
2R	17279307	2R_17279307_SNP [dm3] 2R_21391802_SNP [dm6]	A	G	2.536e^-4	0.936	DOWNSTREAM Sdc INTRON Acox57D-d	TF binding site mE1_TFBS_cad
2L	21187671	2L_21187671_SNP [dm3] 2L_21187671_SNP [dm6]	G	T	2.539e^-4	0.936	INTRON Ret
2L	3222769	2L_3222769_SNP [dm3] 2L_3222769_SNP [dm6]	T	A	2.551e^-4	0.936	INTERGENIC
X	2626808	X_2626808_SNP [dm3] X_2732775_SNP [dm6]	G	T	2.555e^-4	0.936	NON_SYNONYMOUS_CODING CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5720313	3L_5720313_SNP [dm3] 3L_5727213_SNP [dm6]	T	A	2.571e^-4	0.936	INTRON sif
3R	9185490	3R_9185490_SNP [dm3] 3R_13359768_SNP [dm6]	A	G	2.572e^-4	0.936	INTERGENIC
3L	14069358	3L_14069358_SNP [dm3] 3L_14076258_SNP [dm6]	A	G	2.572e^-4	0.936	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8999883	2L_8999883_SNP [dm3] 2L_8999883_SNP [dm6]	T	G	2.574e^-4	0.936	DOWNSTREAM Try29F INTERGENIC
2L	6579130	2L_6579130_SNP [dm3] 2L_6579130_SNP [dm6]	A	C	2.583e^-4	0.936	INTRON CG11319
2R	16104653	2R_16104653_SNP [dm3] 2R_20217148_SNP [dm6]	C	A	2.601e^-4	0.936	INTERGENIC
2L	20931497	2L_20931497_SNP [dm3] 2L_20931497_SNP [dm6]	G	C	2.601e^-4	0.936	SYNONYMOUS_CODING CG9270	TF binding site mE1_TFBS_sens
3L	11998978	3L_11998978_SNP [dm3] 3L_12005878_SNP [dm6]	C	G	2.602e^-4	0.936	INTRON CG6928
2L	14573412	2L_14573412_SNP [dm3] 2L_14573412_SNP [dm6]	A	T	2.607e^-4	0.936	INTERGENIC
3L	8083922	3L_8083922_SNP [dm3] 3L_8090822_SNP [dm6]	A	G	2.610e^-4	0.936	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13754341	2L_13754341_SNP [dm3] 2L_13754341_SNP [dm6]	C	T	2.625e^-4	0.936	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3R	20393804	3R_20393804_SNP [dm3] 3R_24568082_SNP [dm6]	T	C	2.629e^-4	0.936	INTRON CG13624	TF binding site BDTNP1_TFBS_da
X	3017970	X_3017970_INS [dm3] X_3123937_INS [dm6]	C	CTC	2.629e^-4	0.936	INTRON kirre
3R	20356767	3R_20356767_SNP [dm3] 3R_24531045_SNP [dm6]	C	A	2.629e^-4	0.936	SYNONYMOUS_CODING ana1 UPSTREAM CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26490414	3R_26490414_DEL [dm3] 3R_30664692_DEL [dm6]	TT	T	2.650e^-4	0.936	UPSTREAM CR45191 INTERGENIC
3R	6002005	3R_6002005_SNP [dm3] 3R_10176283_SNP [dm6]	T	G	2.655e^-4	0.936	INTRON CG12814
3R	1816312	3R_1816312_SNP [dm3] 3R_5990590_SNP [dm6]	G	A	2.655e^-4	0.936	DOWNSTREAM CR44927 INTERGENIC
X	14540997	X_14540997_SNP [dm3] X_14646964_SNP [dm6]	C	G	2.659e^-4	0.936	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	8176268	X_8176268_DEL [dm3] X_8282235_DEL [dm6]	ACA	A	2.662e^-4	0.936	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
3R	15487243	3R_15487243_DEL [dm3] 3R_19661521_DEL [dm6]	TATACCT	T	2.670e^-4	0.936	INTRON ort
X	15408090	X_15408090_SNP [dm3] X_15514057_SNP [dm6]	A	G	2.671e^-4	0.936	SYNONYMOUS_CODING Ac13E
2L	1161426	2L_1161426_SNP [dm3] 2L_1161426_SNP [dm6]	T	C	2.672e^-4	0.936	SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8470769	X_8470769_SNP [dm3] X_8576736_SNP [dm6]	T	C	2.678e^-4	0.936	INTRON CG12065
3R	21569409	3R_21569409_SNP [dm3] 3R_25743687_SNP [dm6]	C	G	2.680e^-4	0.936	INTRON LpR1
2L	5625070	2L_5625070_SNP [dm3] 2L_5625070_SNP [dm6]	G	A	2.681e^-4	0.936	INTERGENIC
X	14544333	X_14544333_INS [dm3] X_14650300_INS [dm6]	T	TTAT	2.683e^-4	0.936	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5260047	2L_5260047_SNP [dm3] 2L_5260047_SNP [dm6]	T	A	2.685e^-4	0.936	DOWNSTREAM CR44744 INTRON tkv
2R	18101608	2R_18101608_SNP [dm3] 2R_22214103_SNP [dm6]	A	T	2.686e^-4	0.936	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15867598	2L_15867598_INS [dm3] 2L_15867598_INS [dm6]	A	ACA	2.688e^-4	0.936	INTERGENIC
2R	12302081	2R_12302081_SNP [dm3] 2R_16414576_SNP [dm6]	A	T	2.689e^-4	0.936	DOWNSTREAM Menl-2 & 1 other INTRON Sema-2b
2L	20293828	2L_20293828_INS [dm3] 2L_20293828_INS [dm6]	A	ATG	2.695e^-4	0.936	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9664637	2L_9664637_SNP [dm3] 2L_9664637_SNP [dm6]	G	T	2.700e^-4	0.936	INTERGENIC
2R	4004644	2R_4004644_DEL [dm3] 2R_8117139_DEL [dm6]	TT	T	2.701e^-4	0.936	INTRON Asap	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14037324	2L_14037324_SNP [dm3] 2L_14037324_SNP [dm6]	A	G	2.704e^-4	0.936	EXON CR45284
2R	18991404	2R_18991404_SNP [dm3] 2R_23103881_SNP [dm6]	T	A	2.716e^-4	0.936	UPSTREAM Gr59c DOWNSTREAM Gr59d INTERGENIC
3R	13580640	3R_13580640_SNP [dm3] 3R_17754918_SNP [dm6]	C	T	2.722e^-4	0.936	INTRON TyrR
2L	9008594	2L_9008594_SNP [dm3] 2L_9008594_SNP [dm6]	T	A	2.722e^-4	0.936	INTERGENIC
3L	6797148	3L_6797148_SNP [dm3] 3L_6804048_SNP [dm6]	G	A	2.722e^-4	0.936	INTERGENIC
2R	3556879	2R_3556879_SNP [dm3] 2R_7669374_SNP [dm6]	G	T	2.726e^-4	0.936	UPSTREAM CG12042 DOWNSTREAM CG12826 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	11296872	2L_11296872_SNP [dm3] 2L_11296872_SNP [dm6]	T	A	2.741e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	8283013	X_8283013_SNP [dm3] X_8388980_SNP [dm6]	C	T	2.742e^-4	0.936	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11063218	2L_11063218_SNP [dm3] 2L_11063218_SNP [dm6]	T	A	2.744e^-4	0.936	INTRON Samuel
3R	18001659	3R_18001659_SNP [dm3] 3R_22175937_SNP [dm6]	G	T	2.745e^-4	0.936	INTRON SKIP
2R	15228594	2R_15228594_SNP [dm3] 2R_19341089_SNP [dm6]	A	G	2.759e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
3R	23854251	3R_23854251_SNP [dm3] 3R_28028529_SNP [dm6]	C	G	2.761e^-4	0.936	INTRON CG34362
2R	17922215	2R_17922215_DEL [dm3] 2R_22034710_DEL [dm6]	GG	G	2.770e^-4	0.936	UPSTREAM CG9308 INTRON CG34370
3R	20566636	3R_20566636_SNP [dm3] 3R_24740914_SNP [dm6]	G	A	2.782e^-4	0.936	INTRON tok
2R	15228592	2R_15228592_SNP [dm3] 2R_19341087_SNP [dm6]	T	A	2.783e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
3L	10897830	3L_10897830_SNP [dm3] 3L_10904730_SNP [dm6]	C	G	2.790e^-4	0.936	INTERGENIC
3R	26635546	3R_26635546_SNP [dm3] 3R_30809824_SNP [dm6]	T	C	2.797e^-4	0.936	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7434891	X_7434891_SNP [dm3] X_7540858_SNP [dm6]	T	C	2.799e^-4	0.936	INTRON CG32719
3L	16183571	3L_16183571_SNP [dm3] 3L_16190471_SNP [dm6]	T	C	2.799e^-4	0.936	INTERGENIC
X	16988627	X_16988627_SNP [dm3] X_17094594_SNP [dm6]	T	C	2.815e^-4	0.936	INTRON CG16700 & 1 other
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	2.817e^-4	0.936	INTERGENIC
3L	9693719	3L_9693719_SNP [dm3] 3L_9700619_SNP [dm6]	T	G	2.819e^-4	0.936	UTR_3_PRIME CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
3L	9693728	3L_9693728_SNP [dm3] 3L_9700628_SNP [dm6]	A	C	2.819e^-4	0.936	UTR_3_PRIME CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
3R	15644589	3R_15644589_SNP [dm3] 3R_19818867_SNP [dm6]	C	T	2.821e^-4	0.936	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21015431	2L_21015431_INS [dm3] 2L_21015431_INS [dm6]	C	CGAGC	2.823e^-4	0.936	INTRON CG42238
X	20721444	X_20721444_SNP [dm3] X_20850417_SNP [dm6]	C	T	2.828e^-4	0.936	INTRON shakB
2L	4682025	2L_4682025_SNP [dm3] 2L_4682025_SNP [dm6]	C	G	2.834e^-4	0.936	UPSTREAM CG11929 INTERGENIC
3L	2378224	3L_2378224_SNP [dm3] 3L_2378224_SNP [dm6]	C	T	2.836e^-4	0.936	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10232702	3L_10232702_SNP [dm3] 3L_10239602_SNP [dm6]	C	A	2.838e^-4	0.936	UPSTREAM CR45403 INTERGENIC
2L	2791428	2L_2791428_SNP [dm3] 2L_2791428_SNP [dm6]	T	A	2.859e^-4	0.936	INTRON Syt1
3R	23854240	3R_23854240_SNP [dm3] 3R_28028518_SNP [dm6]	C	A	2.859e^-4	0.936	INTRON CG34362
3R	8452205	3R_8452205_SNP [dm3] 3R_12626483_SNP [dm6]	T	A	2.863e^-4	0.936	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	14760397	2R_14760397_SNP [dm3] 2R_18872892_SNP [dm6]	C	A	2.865e^-4	0.936	INTERGENIC
2R	8651435	2R_8651435_SNP [dm3] 2R_12763930_SNP [dm6]	A	T	2.871e^-4	0.936	DOWNSTREAM CG12374 INTERGENIC
2L	7242617	2L_7242617_SNP [dm3] 2L_7242617_SNP [dm6]	C	T	2.880e^-4	0.936	INTRON Ndae1
3R	12275376	3R_12275376_SNP [dm3] 3R_16449654_SNP [dm6]	A	G	2.892e^-4	0.936	INTRON Pak3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3669033	2L_3669033_INS [dm3] 2L_3669033_INS [dm6]	A	AAAAAT	2.899e^-4	0.936	UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340 & 1 other
2L	3840629	2L_3840629_SNP [dm3] 2L_3840629_SNP [dm6]	A	C	2.910e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	2.918e^-4	0.936	INTERGENIC
3L	12200364	3L_12200364_SNP [dm3] 3L_12207264_SNP [dm6]	C	G	2.941e^-4	0.936	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	706430	3L_706430_SNP [dm3] 3L_706430_SNP [dm6]	C	T	2.949e^-4	0.936	NON_SYNONYMOUS_CODING CG13895 DOWNSTREAM CR44514
3R	4958861	3R_4958861_SNP [dm3] 3R_9133139_SNP [dm6]	T	A	2.952e^-4	0.936	INTRON pum
X	21469661	X_21469661_SNP [dm3] X_21598634_SNP [dm6]	G	A	2.952e^-4	0.936	INTERGENIC	transposable element FlyBase
3L	12721080	3L_12721080_SNP [dm3] 3L_12727980_SNP [dm6]	T	G	2.954e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13379634	3R_13379634_SNP [dm3] 3R_17553912_SNP [dm6]	C	T	2.955e^-4	0.936	INTERGENIC
2L	20425624	2L_20425624_SNP [dm3] 2L_20425624_SNP [dm6]	T	A	2.967e^-4	0.936	UPSTREAM CG15130 & 1 other INTERGENIC
2R	10096469	2R_10096469_INS [dm3] 2R_14208964_INS [dm6]	T	TTTCT	2.967e^-4	0.936	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12403146	3L_12403146_SNP [dm3] 3L_12410046_SNP [dm6]	C	A	2.988e^-4	0.936	INTRON CG32103
X	14398783	X_14398783_SNP [dm3] X_14504750_SNP [dm6]	A	T	2.995e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3221563	2L_3221563_SNP [dm3] 2L_3221563_SNP [dm6]	G	T	2.997e^-4	0.936	INTERGENIC
3L	2157404	3L_2157404_SNP [dm3] 3L_2157404_SNP [dm6]	A	G	2.997e^-4	0.936	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12626365	3L_12626365_SNP [dm3] 3L_12633265_SNP [dm6]	C	T	3.005e^-4	0.936	INTRON CR32111	TF binding site mE1_TFBS_cad
2R	7986600	2R_7986600_SNP [dm3] 2R_12099095_SNP [dm6]	C	A	3.023e^-4	0.936	INTRON jeb
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	3.025e^-4	0.936	INTERGENIC
X	12057970	X_12057970_SNP [dm3] X_12163937_SNP [dm6]	T	A	3.025e^-4	0.936	INTRON Ten-a
3R	12275507	3R_12275507_SNP [dm3] 3R_16449785_SNP [dm6]	G	A	3.028e^-4	0.936	INTRON Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12645150	2L_12645150_SNP [dm3] 2L_12645150_SNP [dm6]	A	C	3.032e^-4	0.936	INTRON Ref2
2L	3219386	2L_3219386_SNP [dm3] 2L_3219386_SNP [dm6]	C	G	3.033e^-4	0.936	INTERGENIC
3L	4031904	3L_4031904_SNP [dm3] 3L_4031904_SNP [dm6]	G	C	3.037e^-4	0.936	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d & 1 other
3R	11897232	3R_11897232_SNP [dm3] 3R_16071510_SNP [dm6]	G	A	3.041e^-4	0.936	SPLICE_SITE_REGION Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10705015	2L_10705015_SNP [dm3] 2L_10705015_SNP [dm6]	T	G	3.042e^-4	0.936	DOWNSTREAM CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2R	10967629	2R_10967629_SNP [dm3] 2R_15080124_SNP [dm6]	A	C	3.044e^-4	0.936	INTERGENIC
X	9321711	X_9321711_SNP [dm3] X_9427678_SNP [dm6]	A	G	3.050e^-4	0.936	INTRON mgl
3R	12273459	3R_12273459_SNP [dm3] 3R_16447737_SNP [dm6]	T	G	3.050e^-4	0.936	INTRON Pak3
3R	20393294	3R_20393294_DEL [dm3] 3R_24567572_DEL [dm6]	AA	A	3.052e^-4	0.936	INTRON CG13624	TF binding site mE1_TFBS_cnc
3L	13855283	3L_13855283_SNP [dm3] 3L_13862183_SNP [dm6]	A	T	3.065e^-4	0.936	INTRON CG8745
3R	4742323	3R_4742323_SNP [dm3] 3R_8916601_SNP [dm6]	T	G	3.065e^-4	0.936	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	12658060	3L_12658060_SNP [dm3] 3L_12664960_SNP [dm6]	G	A	3.077e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8999898	2L_8999898_SNP [dm3] 2L_8999898_SNP [dm6]	C	A	3.084e^-4	0.936	DOWNSTREAM Try29F INTERGENIC
3L	16808001	3L_16808001_INS [dm3] 3L_16814901_INS [dm6]	G	GG	3.089e^-4	0.936	INTRON nudC & 1 other
2L	3220646	2L_3220646_SNP [dm3] 2L_3220646_SNP [dm6]	T	G	3.090e^-4	0.936	INTERGENIC
X	4326020	X_4326020_SNP [dm3] X_4431987_SNP [dm6]	A	G	3.090e^-4	0.936	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	7799849	3L_7799849_SNP [dm3] 3L_7806749_SNP [dm6]	C	T	3.091e^-4	0.936	INTRON CG32369
3R	26119509	3R_26119509_SNP [dm3] 3R_30293787_SNP [dm6]	A	T	3.114e^-4	0.936	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15669865	3R_15669865_SNP [dm3] 3R_19844143_SNP [dm6]	A	G	3.124e^-4	0.936	INTERGENIC
3R	19231381	3R_19231381_SNP [dm3] 3R_23405659_SNP [dm6]	C	A	3.125e^-4	0.936	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	12196523	3L_12196523_SNP [dm3] 3L_12203423_SNP [dm6]	A	G	3.127e^-4	0.936	DOWNSTREAM CG5626 INTRON Adk1	TF binding site mE1_TFBS_inv
2R	20339117	2R_20339117_SNP [dm3] 2R_24451594_SNP [dm6]	G	A	3.129e^-4	0.936	SYNONYMOUS_CODING CG4563	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	17008887	3R_17008887_SNP [dm3] 3R_21183165_SNP [dm6]	T	G	3.130e^-4	0.936	INTRON SNF4Agamma
3L	2356889	3L_2356889_SNP [dm3] 3L_2356889_SNP [dm6]	T	A	3.131e^-4	0.936	INTERGENIC
X	21466655	X_21466655_SNP [dm3] X_21595628_SNP [dm6]	C	T	3.133e^-4	0.936	INTERGENIC
2L	6815601	2L_6815601_SNP [dm3] 2L_6815601_SNP [dm6]	A	T	3.137e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12890231	X_12890231_SNP [dm3] X_12996198_SNP [dm6]	A	T	3.139e^-4	0.936	INTRON rad	TF binding site BDTNP1_TFBS_twi
2L	7938254	2L_7938254_SNP [dm3] 2L_7938254_SNP [dm6]	G	A	3.145e^-4	0.936	INTRON Snoo
2L	8995102	2L_8995102_SNP [dm3] 2L_8995102_SNP [dm6]	G	T	3.146e^-4	0.936	SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien	TF binding site mE1_TFBS_sens
3R	14134091	3R_14134091_SNP [dm3] 3R_18308369_SNP [dm6]	C	G	3.149e^-4	0.936	INTRON PKD
X	21076677	X_21076677_SNP [dm3] X_21205650_SNP [dm6]	G	A	3.150e^-4	0.936	UTR_3_PRIME CG32521
2L	17360272	2L_17360272_SNP [dm3] 2L_17360272_SNP [dm6]	G	A	3.161e^-4	0.936	UPSTREAM CR44346 INTERGENIC
2L	6901064	2L_6901064_SNP [dm3] 2L_6901064_SNP [dm6]	C	G	3.166e^-4	0.936	UPSTREAM mir-932 INTRON Nlg2
2L	8999547	2L_8999547_SNP [dm3] 2L_8999547_SNP [dm6]	T	G	3.174e^-4	0.936	UTR_3_PRIME Try29F DOWNSTREAM Try29F	TF binding site mE1_TFBS_cad
3L	5151615	3L_5151615_SNP [dm3] 3L_5158515_SNP [dm6]	G	A	3.184e^-4	0.936	UTR_3_PRIME shep DOWNSTREAM shep
2L	8071735	2L_8071735_SNP [dm3] 2L_8071735_SNP [dm6]	A	C	3.186e^-4	0.936	UPSTREAM poe DOWNSTREAM MED20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20817255	2L_20817255_SNP [dm3] 2L_20817255_SNP [dm6]	C	T	3.188e^-4	0.936	NON_SYNONYMOUS_CODING CheB38b DOWNSTREAM CheB38a
3R	13384423	3R_13384423_DEL [dm3] 3R_17558701_DEL [dm6]	CG	C	3.188e^-4	0.936	UPSTREAM Hmx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	7424690	3L_7424690_SNP [dm3] 3L_7431590_SNP [dm6]	G	A	3.190e^-4	0.936	INTRON CG42458
3L	7424696	3L_7424696_SNP [dm3] 3L_7431596_SNP [dm6]	G	A	3.190e^-4	0.936	INTRON CG42458
3L	9899863	3L_9899863_SNP [dm3] 3L_9906763_SNP [dm6]	A	C	3.192e^-4	0.936	INTERGENIC
3R	12277696	3R_12277696_SNP [dm3] 3R_16451974_SNP [dm6]	A	G	3.201e^-4	0.936	SYNONYMOUS_CODING Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3220805	2L_3220805_SNP [dm3] 2L_3220805_SNP [dm6]	C	A	3.205e^-4	0.936	INTERGENIC
2R	17447642	2R_17447642_SNP [dm3] 2R_21560137_SNP [dm6]	G	C	3.215e^-4	0.936	DOWNSTREAM CG10440 & 1 other INTERGENIC
X	5495266	X_5495266_SNP [dm3] X_5601233_SNP [dm6]	A	G	3.216e^-4	0.936	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12334462	X_12334462_DEL [dm3] X_12440429_DEL [dm6]	GCAGTCTTTTATTTTTGTTA...	G	3.218e^-4	0.936	INTRON Pkcdelta
2R	18088506	2R_18088506_SNP [dm3] 2R_22201001_SNP [dm6]	A	G	3.221e^-4	0.936	UPSTREAM CR45376 INTRON Swim	TF binding site mE1_TFBS_HSA
2R	21020619	2R_21020619_SNP [dm3] 2R_25133096_SNP [dm6]	C	T	3.227e^-4	0.936	INTRON lov	transposable element FlyBase
2L	6795008	2L_6795008_SNP [dm3] 2L_6795008_SNP [dm6]	A	G	3.231e^-4	0.936	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	5252513	2R_5252513_SNP [dm3] 2R_9365008_SNP [dm6]	G	A	3.232e^-4	0.936	INTRON CG13954
3L	12048670	3L_12048670_SNP [dm3] 3L_12055570_SNP [dm6]	G	A	3.234e^-4	0.936	UTR_5_PRIME rols INTRON rols
2L	10760678	2L_10760678_SNP [dm3] 2L_10760678_SNP [dm6]	G	A	3.243e^-4	0.936	UPSTREAM CG6495 INTERGENIC
3L	1730411	3L_1730411_SNP [dm3] 3L_1730411_SNP [dm6]	G	A	3.247e^-4	0.936	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	20293896	2L_20293896_DEL [dm3] 2L_20293896_DEL [dm6]	TAGATTTTTACTAAT...	T	3.248e^-4	0.936	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21655654	3R_21655654_SNP [dm3] 3R_25829932_SNP [dm6]	G	A	3.249e^-4	0.936	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3R	26495557	3R_26495557_SNP [dm3] 3R_30669835_SNP [dm6]	C	T	3.254e^-4	0.936	INTERGENIC
2L	1608336	2L_1608336_SNP [dm3] 2L_1608336_SNP [dm6]	G	A	3.261e^-4	0.936	UTR_3_PRIME haf INTRON CG31935
3L	12105538	3L_12105538_SNP [dm3] 3L_12112438_SNP [dm6]	C	G	3.265e^-4	0.936	INTERGENIC
3R	12924194	3R_12924194_SNP [dm3] 3R_17098472_SNP [dm6]	C	T	3.273e^-4	0.936	INTRON cher
3R	12924322	3R_12924322_SNP [dm3] 3R_17098600_SNP [dm6]	A	T	3.273e^-4	0.936	UTR_5_PRIME cher INTRON cher
3R	26731994	3R_26731994_SNP [dm3] 3R_30906272_SNP [dm6]	C	A	3.274e^-4	0.936	INTERGENIC
3L	2513159	3L_2513159_SNP [dm3] 3L_2513159_SNP [dm6]	G	A	3.280e^-4	0.936	INTRON Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10929544	3L_10929544_SNP [dm3] 3L_10936444_SNP [dm6]	G	T	3.298e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12025387	2L_12025387_SNP [dm3] 2L_12025387_SNP [dm6]	A	C	3.300e^-4	0.936	UPSTREAM CR44587 INTERGENIC
2L	10369270	2L_10369270_SNP [dm3] 2L_10369270_SNP [dm6]	A	T	3.304e^-4	0.936	SPLICE_SITE_REGION rho-5 INTRON rho-5	TF binding site mE1_TFBS_cad
3L	826239	3L_826239_SNP [dm3] 3L_826239_SNP [dm6]	A	T	3.314e^-4	0.936	DOWNSTREAM CG13900 & 2 others INTERGENIC
2L	17331787	2L_17331787_SNP [dm3] 2L_17331787_SNP [dm6]	C	T	3.315e^-4	0.936	INTERGENIC
3R	19651802	3R_19651802_SNP [dm3] 3R_23826080_SNP [dm6]	T	C	3.319e^-4	0.936	UPSTREAM snRNA:U1:95Cc & 1 other INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4824932	X_4824932_DEL [dm3] X_4930899_DEL [dm6]	TT	T	3.322e^-4	0.936	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3797243	X_3797243_SNP [dm3] X_3903210_SNP [dm6]	A	T	3.330e^-4	0.936	INTRON CG42541
2L	5748561	2L_5748561_SNP [dm3] 2L_5748561_SNP [dm6]	T	G	3.336e^-4	0.936	DOWNSTREAM CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2R	11389100	2R_11389100_SNP [dm3] 2R_15501595_SNP [dm6]	C	T	3.347e^-4	0.936	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
2L	16844564	2L_16844564_SNP [dm3] 2L_16844564_SNP [dm6]	A	G	3.351e^-4	0.936	SYNONYMOUS_CODING CG13284
3R	20397408	3R_20397408_SNP [dm3] 3R_24571686_SNP [dm6]	G	A	3.353e^-4	0.936	UTR_5_PRIME CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15228641	2R_15228641_SNP [dm3] 2R_19341136_SNP [dm6]	G	C	3.354e^-4	0.936	UPSTREAM CG9975 INTRON Rgk1
3R	10198552	3R_10198552_SNP [dm3] 3R_14372830_SNP [dm6]	G	T	3.354e^-4	0.936	UTR_5_PRIME NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5151457	3L_5151457_SNP [dm3] 3L_5158357_SNP [dm6]	A	C	3.360e^-4	0.936	UTR_3_PRIME shep DOWNSTREAM shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25207116	3R_25207116_SNP [dm3] 3R_29381394_SNP [dm6]	T	A	3.365e^-4	0.936	INTRON Ptp99A
3L	11852114	3L_11852114_SNP [dm3] 3L_11859014_SNP [dm6]	C	T	3.375e^-4	0.936	INTRON CG44837
2L	20882797	2L_20882797_SNP [dm3] 2L_20882797_SNP [dm6]	G	A	3.380e^-4	0.936	INTRON sky & 1 other
3L	16186554	3L_16186554_SNP [dm3] 3L_16193454_SNP [dm6]	G	A	3.383e^-4	0.936	INTERGENIC
3L	10733866	3L_10733866_SNP [dm3] 3L_10740766_SNP [dm6]	G	A	3.389e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5625077	2L_5625077_SNP [dm3] 2L_5625077_SNP [dm6]	T	C	3.390e^-4	0.936	INTERGENIC
3R	21581164	3R_21581164_SNP [dm3] 3R_25755442_SNP [dm6]	A	G	3.391e^-4	0.936	INTRON LpR1
3R	22685573	3R_22685573_SNP [dm3] 3R_26859851_SNP [dm6]	G	A	3.393e^-4	0.936	INTRON Lerp
X	2151827	X_2151827_SNP [dm3] X_2257794_SNP [dm6]	C	T	3.401e^-4	0.936	INTRON CG3078	TF binding site mE1_TFBS_chinmo
2L	3217864	2L_3217864_SNP [dm3] 2L_3217864_SNP [dm6]	G	C	3.407e^-4	0.936	INTERGENIC
2L	14330513	2L_14330513_SNP [dm3] 2L_14330513_SNP [dm6]	G	A	3.408e^-4	0.936	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
3L	11012436	3L_11012436_SNP [dm3] 3L_11019336_SNP [dm6]	T	A	3.408e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10409291	2R_10409291_SNP [dm3] 2R_14521786_SNP [dm6]	T	C	3.412e^-4	0.936	INTERGENIC
2R	10409297	2R_10409297_SNP [dm3] 2R_14521792_SNP [dm6]	A	T	3.412e^-4	0.936	INTERGENIC
2L	9380731	2L_9380731_SNP [dm3] 2L_9380731_SNP [dm6]	G	A	3.414e^-4	0.936	INTRON Shawl
2R	11846146	2R_11846146_SNP [dm3] 2R_15958641_SNP [dm6]	T	C	3.418e^-4	0.936	SYNONYMOUS_CODING Strn-Mlck DOWNSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9054405	2R_9054405_SNP [dm3] 2R_13166900_SNP [dm6]	G	T	3.427e^-4	0.936	INTRON GLaz
X	6944764	X_6944764_SNP [dm3] X_7050731_SNP [dm6]	C	T	3.431e^-4	0.936	DOWNSTREAM nullo INTRON CG12541
2L	10709795	2L_10709795_SNP [dm3] 2L_10709795_SNP [dm6]	A	G	3.432e^-4	0.936	UPSTREAM CR44407 & 1 other INTERGENIC
3R	26634571	3R_26634571_SNP [dm3] 3R_30808849_SNP [dm6]	C	A	3.443e^-4	0.936	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3L	18133248	3L_18133248_DEL [dm3] 3L_18140148_DEL [dm6]	TTA	T	3.444e^-4	0.936	INTRON gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	4520493	X_4520493_SNP [dm3] X_4626460_SNP [dm6]	A	G	3.454e^-4	0.936	UTR_3_PRIME peb DOWNSTREAM peb & 1 other
X	4833031	X_4833031_SNP [dm3] X_4938998_SNP [dm6]	T	G	3.457e^-4	0.936	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6687976	2L_6687976_SNP [dm3] 2L_6687976_SNP [dm6]	C	T	3.470e^-4	0.936	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13855346	3L_13855346_SNP [dm3] 3L_13862246_SNP [dm6]	T	A	3.471e^-4	0.936	INTRON CG8745
3L	12105551	3L_12105551_SNP [dm3] 3L_12112451_SNP [dm6]	G	T	3.482e^-4	0.936	INTERGENIC
X	2626383	X_2626383_SNP [dm3] X_2732350_SNP [dm6]	A	T	3.494e^-4	0.936	UPSTREAM CG2712 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14491125	2R_14491125_SNP [dm3] 2R_18603620_SNP [dm6]	G	C	3.496e^-4	0.936	INTRON GEFmeso
2L	14860441	2L_14860441_SNP [dm3] 2L_14860441_SNP [dm6]	C	T	3.507e^-4	0.936	INTERGENIC
2L	11057625	2L_11057625_INS [dm3] 2L_11057625_INS [dm6]	T	TAA	3.509e^-4	0.936	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11057634	2L_11057634_INS [dm3] 2L_11057634_INS [dm6]	T	TCACAAAAT	3.509e^-4	0.936	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17360276	2L_17360276_SNP [dm3] 2L_17360276_SNP [dm6]	G	T	3.509e^-4	0.936	UPSTREAM CR44346 INTERGENIC
X	20046576	X_20046576_SNP [dm3] X_20152543_SNP [dm6]	T	A	3.516e^-4	0.936	INTRON CG9572	TF binding site mE1_TFBS_inv
3R	14059231	3R_14059231_SNP [dm3] 3R_18233509_SNP [dm6]	A	G	3.523e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs
3L	3794137	3L_3794137_SNP [dm3] 3L_3794137_SNP [dm6]	T	A	3.542e^-4	0.936	INTRON CG32264
2R	20014685	2R_20014685_SNP [dm3] 2R_24127162_SNP [dm6]	G	T	3.548e^-4	0.936	UTR_3_PRIME tamo UPSTREAM CG43775 & 2 others
X	17212234	X_17212234_SNP [dm3] X_17318201_SNP [dm6]	T	C	3.558e^-4	0.936	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6419958	2L_6419958_SNP [dm3] 2L_6419958_SNP [dm6]	G	A	3.561e^-4	0.936	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18484226	3R_18484226_SNP [dm3] 3R_22658504_SNP [dm6]	A	G	3.566e^-4	0.936	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17325856	2L_17325856_SNP [dm3] 2L_17325856_SNP [dm6]	C	A	3.566e^-4	0.936	INTERGENIC
3L	13199023	3L_13199023_SNP [dm3] 3L_13205923_SNP [dm6]	G	A	3.570e^-4	0.936	INTERGENIC
X	11940670	X_11940670_SNP [dm3] X_12046637_SNP [dm6]	T	A	3.572e^-4	0.936	INTRON CR43960 & 1 other
3L	2378082	3L_2378082_SNP [dm3] 3L_2378082_SNP [dm6]	G	A	3.574e^-4	0.936	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2378107	3L_2378107_SNP [dm3] 3L_2378107_SNP [dm6]	A	T	3.574e^-4	0.936	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20865045	2L_20865045_SNP [dm3] 2L_20865045_SNP [dm6]	T	A	3.575e^-4	0.936	UPSTREAM CG9338 INTERGENIC
2R	3520938	2R_3520938_SNP [dm3] 2R_7633433_SNP [dm6]	A	T	3.576e^-4	0.936	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_chinmo
2L	17318793	2L_17318793_SNP [dm3] 2L_17318793_SNP [dm6]	G	A	3.580e^-4	0.936	DOWNSTREAM CR45696 INTERGENIC
2L	17318794	2L_17318794_SNP [dm3] 2L_17318794_SNP [dm6]	T	A	3.580e^-4	0.936	DOWNSTREAM CR45696 INTERGENIC
3R	21713687	3R_21713687_SNP [dm3] 3R_25887965_SNP [dm6]	T	C	3.580e^-4	0.936	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
3R	21861561	3R_21861561_SNP [dm3] 3R_26035839_SNP [dm6]	C	T	3.581e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5303289	X_5303289_SNP [dm3] X_5409256_SNP [dm6]	T	C	3.584e^-4	0.936	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2R	10525578	2R_10525578_SNP [dm3] 2R_14638073_SNP [dm6]	A	G	3.591e^-4	0.936	UPSTREAM CG43236 INTERGENIC
X	4103712	X_4103712_SNP [dm3] X_4209679_SNP [dm6]	G	A	3.591e^-4	0.936	INTERGENIC
2R	10407773	2R_10407773_SNP [dm3] 2R_14520268_SNP [dm6]	T	A	3.592e^-4	0.936	INTERGENIC
2L	18601704	2L_18601704_SNP [dm3] 2L_18601704_SNP [dm6]	C	T	3.602e^-4	0.936	SYNONYMOUS_CODING CG10413
2L	9039973	2L_9039973_SNP [dm3] 2L_9039973_SNP [dm6]	A	G	3.604e^-4	0.936	INTERGENIC
3R	24731841	3R_24731841_SNP [dm3] 3R_28906119_SNP [dm6]	G	A	3.605e^-4	0.936	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20402845	X_20402845_DEL [dm3] X_20531818_DEL [dm6]	CTGTTCGCATGAACCTTTTC...	C	3.613e^-4	0.936	INTERGENIC
2L	7932208	2L_7932208_SNP [dm3] 2L_7932208_SNP [dm6]	A	G	3.619e^-4	0.936	INTRON Snoo
3L	11852039	3L_11852039_SNP [dm3] 3L_11858939_SNP [dm6]	C	G	3.619e^-4	0.936	INTRON CG44837
3R	14863501	3R_14863501_SNP [dm3] 3R_19037779_SNP [dm6]	C	G	3.622e^-4	0.936	INTRON CG6026
2L	3220626	2L_3220626_DEL [dm3] 2L_3220626_DEL [dm6]	TCAAT	T	3.643e^-4	0.938	INTERGENIC
2R	14675812	2R_14675812_SNP [dm3] 2R_18788307_SNP [dm6]	G	C	3.645e^-4	0.938	INTRON CG15080
3R	19852993	3R_19852993_SNP [dm3] 3R_24027271_SNP [dm6]	G	A	3.676e^-4	0.938	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22687616	3R_22687616_SNP [dm3] 3R_26861894_SNP [dm6]	A	T	3.684e^-4	0.938	NON_SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
2L	17503308	2L_17503308_INS [dm3] 2L_17503308_INS [dm6]	A	AA	3.687e^-4	0.938	INTRON Dhc36C
2R	18815810	2R_18815810_SNP [dm3] 2R_22928287_SNP [dm6]	C	G	3.691e^-4	0.938	UPSTREAM CG42678 DOWNSTREAM CG42678 INTRON CG42678
3L	20549471	3L_20549471_SNP [dm3] 3L_20556371_SNP [dm6]	G	T	3.699e^-4	0.938	INTERGENIC
3R	18001680	3R_18001680_SNP [dm3] 3R_22175958_SNP [dm6]	C	G	3.701e^-4	0.938	INTRON SKIP
3R	22749295	3R_22749295_SNP [dm3] 3R_26923573_SNP [dm6]	G	T	3.717e^-4	0.938	INTRON sda
3R	24844172	3R_24844172_SNP [dm3] 3R_29018450_SNP [dm6]	C	A	3.720e^-4	0.938	INTRON wat
X	7434962	X_7434962_INS [dm3] X_7540929_INS [dm6]	T	TT	3.724e^-4	0.938	INTRON CG32719
2L	8995902	2L_8995902_SNP [dm3] 2L_8995902_SNP [dm6]	G	A	3.725e^-4	0.938	SYNONYMOUS_CODING alien DOWNSTREAM CG17906	TF binding site mE1_TFBS_sens
2R	16648130	2R_16648130_SNP [dm3] 2R_20760625_SNP [dm6]	C	T	3.743e^-4	0.938	INTERGENIC
2L	14843811	2L_14843811_SNP [dm3] 2L_14843811_SNP [dm6]	G	A	3.745e^-4	0.938	DOWNSTREAM CG42682 INTERGENIC
X	3970612	X_3970612_SNP [dm3] X_4076579_SNP [dm6]	C	T	3.746e^-4	0.938	INTRON CG43689
X	5303281	X_5303281_INS [dm3] X_5409248_INS [dm6]	G	GCCAAAG	3.749e^-4	0.938	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	6815263	2L_6815263_SNP [dm3] 2L_6815263_SNP [dm6]	G	C	3.752e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv mE1_TFBS_Kr
X	6054061	X_6054061_SNP [dm3] X_6160028_SNP [dm6]	A	G	3.755e^-4	0.938	INTRON Ca-alpha1T
3R	20393748	3R_20393748_SNP [dm3] 3R_24568026_SNP [dm6]	T	C	3.759e^-4	0.938	INTRON CG13624
2R	7988903	2R_7988903_INS [dm3] 2R_12101398_INS [dm6]	C	CCTTGATG	3.769e^-4	0.938	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13378084	3R_13378084_SNP [dm3] 3R_17552362_SNP [dm6]	G	A	3.779e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21581180	3R_21581180_SNP [dm3] 3R_25755458_SNP [dm6]	A	G	3.779e^-4	0.938	INTRON LpR1
2L	4028929	2L_4028929_SNP [dm3] 2L_4028929_SNP [dm6]	G	A	3.789e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8071721	2L_8071721_SNP [dm3] 2L_8071721_SNP [dm6]	A	T	3.805e^-4	0.938	UPSTREAM poe DOWNSTREAM MED20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3791554	3L_3791554_SNP [dm3] 3L_3791554_SNP [dm6]	A	T	3.810e^-4	0.938	UTR_3_PRIME CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20931455	2L_20931455_SNP [dm3] 2L_20931455_SNP [dm6]	C	T	3.811e^-4	0.938	SYNONYMOUS_CODING CG9270	TF binding site mE1_TFBS_sens
3L	3524204	3L_3524204_SNP [dm3] 3L_3524204_SNP [dm6]	C	G	3.814e^-4	0.938	UPSTREAM CR45043 INTRON Eip63E
3R	22164183	3R_22164183_SNP [dm3] 3R_26338461_SNP [dm6]	G	A	3.818e^-4	0.938	INTRON CG33970
3R	669657	3R_669657_SNP [dm3] 3R_4843935_SNP [dm6]	A	T	3.820e^-4	0.938	INTERGENIC
3L	12900364	3L_12900364_SNP [dm3] 3L_12907264_SNP [dm6]	A	G	3.822e^-4	0.938	INTERGENIC
X	10023515	X_10023515_SNP [dm3] X_10129482_SNP [dm6]	T	A	3.828e^-4	0.938	INTRON CR44894 & 1 other
3R	7846600	3R_7846600_SNP [dm3] 3R_12020878_SNP [dm6]	T	A	3.829e^-4	0.938	INTERGENIC
2L	20865046	2L_20865046_SNP [dm3] 2L_20865046_SNP [dm6]	A	T	3.835e^-4	0.938	UPSTREAM CG9338 INTERGENIC
X	22335115	X_22335115_SNP [dm3] X_22933279_SNP [dm6]	T	G	3.836e^-4	0.938	INTERGENIC	transposable element FlyBase
2L	5037209	2L_5037209_SNP [dm3] 2L_5037209_SNP [dm6]	G	A	3.836e^-4	0.938	UTR_3_PRIME Cg25C UPSTREAM SP555 & 1 other DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3R	26633750	3R_26633750_SNP [dm3] 3R_30808028_SNP [dm6]	G	T	3.838e^-4	0.938	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14294814	2L_14294814_INS [dm3] 2L_14294814_INS [dm6]	A	TTGTCAGGTGTATTGTAAGA...	3.838e^-4	0.938	INTRON wb & 1 other
3L	16806555	3L_16806555_SNP [dm3] 3L_16813455_SNP [dm6]	A	G	3.845e^-4	0.938	INTRON nudC & 1 other
3L	3754742	3L_3754742_SNP [dm3] 3L_3754742_SNP [dm6]	G	A	3.845e^-4	0.938	SYNONYMOUS_CODING ppk27 INTRON CG32264
X	13456606	X_13456606_SNP [dm3] X_13562573_SNP [dm6]	C	T	3.848e^-4	0.938	SYNONYMOUS_CODING CG32633	TF binding site mE1_TFBS_chinmo
3L	1748672	3L_1748672_SNP [dm3] 3L_1748672_SNP [dm6]	G	A	3.853e^-4	0.938	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3750357	3L_3750357_SNP [dm3] 3L_3750357_SNP [dm6]	G	A	3.855e^-4	0.938	INTRON CG32264
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	3.855e^-4	0.938	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13229436	2R_13229436_SNP [dm3] 2R_17341931_SNP [dm6]	G	T	3.859e^-4	0.938	INTRON mbl
3R	17453223	3R_17453223_SNP [dm3] 3R_21627501_SNP [dm6]	G	C	3.863e^-4	0.938	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22113221	3L_22113221_SNP [dm3] 3L_22120121_SNP [dm6]	G	T	3.864e^-4	0.938	INTERGENIC
X	12058043	X_12058043_SNP [dm3] X_12164010_SNP [dm6]	G	A	3.867e^-4	0.938	INTRON Ten-a
2R	16647380	2R_16647380_SNP [dm3] 2R_20759875_SNP [dm6]	G	T	3.867e^-4	0.938	INTERGENIC
2L	15523412	2L_15523412_SNP [dm3] 2L_15523412_SNP [dm6]	C	A	3.882e^-4	0.94	INTRON CR43761 EXON CR43761
3L	1747910	3L_1747910_SNP [dm3] 3L_1747910_SNP [dm6]	C	T	3.891e^-4	0.941	NON_SYNONYMOUS_CODING CG13921 UTR_5_PRIME CG13921 UPSTREAM CG13921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	7015299	2L_7015299_SNP [dm3] 2L_7015299_SNP [dm6]	G	A	3.922e^-4	0.944	SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21690884	3R_21690884_SNP [dm3] 3R_25865162_SNP [dm6]	G	A	3.931e^-4	0.944	INTRON CG5890
2L	15382080	2L_15382080_SNP [dm3] 2L_15382080_SNP [dm6]	C	T	3.934e^-4	0.944	INTERGENIC
X	16550530	X_16550530_SNP [dm3] X_16656497_SNP [dm6]	T	G	3.936e^-4	0.944	NON_SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18177084	3R_18177084_SNP [dm3] 3R_22351362_SNP [dm6]	A	C	3.940e^-4	0.944	UPSTREAM rdhB INTERGENIC
X	20719285	X_20719285_SNP [dm3] X_20848258_SNP [dm6]	G	A	3.941e^-4	0.944	INTRON shakB
3L	18601524	3L_18601524_SNP [dm3] 3L_18608424_SNP [dm6]	A	T	3.953e^-4	0.944	INTRON CG4174 & 2 others
2R	18549365	2R_18549365_SNP [dm3] 2R_22661860_SNP [dm6]	G	A	3.954e^-4	0.944	UPSTREAM CG42566 DOWNSTREAM CG42565 & 2 others INTERGENIC
X	4825018	X_4825018_SNP [dm3] X_4930985_SNP [dm6]	C	A	3.959e^-4	0.944	UTR_5_PRIME CG44774 UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16745181	3L_16745181_SNP [dm3] 3L_16752081_SNP [dm6]	T	G	3.961e^-4	0.944	INTERGENIC
3R	18820891	3R_18820891_SNP [dm3] 3R_22995169_SNP [dm6]	A	G	3.962e^-4	0.944	INTRON Nha2
3L	12076975	3L_12076975_SNP [dm3] 3L_12083875_SNP [dm6]	C	T	3.977e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5259705	3L_5259705_INS [dm3] 3L_5266605_INS [dm6]	C	CTCCCT	3.983e^-4	0.944	INTRON shep
3L	6504671	3L_6504671_SNP [dm3] 3L_6511571_SNP [dm6]	T	A	3.995e^-4	0.944	INTRON sfl
3L	11656849	3L_11656849_SNP [dm3] 3L_11663749_SNP [dm6]	T	C	4.004e^-4	0.944	INTRON CG32085	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20853076	2L_20853076_SNP [dm3] 2L_20853076_SNP [dm6]	C	A	4.004e^-4	0.944	INTRON twit
X	8888122	X_8888122_SNP [dm3] X_8994089_SNP [dm6]	A	G	4.012e^-4	0.944	UPSTREAM mir-31b INTRON rdgA & 1 other
2R	3221676	2R_3221676_SNP [dm3] 2R_7334171_SNP [dm6]	A	T	4.013e^-4	0.944	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
3L	21105894	3L_21105894_SNP [dm3] 3L_21112794_SNP [dm6]	T	C	4.013e^-4	0.944	INTRON ko	regulatory region REDfly_CRMs
2R	15703752	2R_15703752_SNP [dm3] 2R_19816247_SNP [dm6]	T	A	4.019e^-4	0.944	DOWNSTREAM Obp56h INTERGENIC
3R	18001693	3R_18001693_SNP [dm3] 3R_22175971_SNP [dm6]	T	G	4.029e^-4	0.944	INTRON SKIP
2R	5488782	2R_5488782_SNP [dm3] 2R_9601277_SNP [dm6]	G	A	4.040e^-4	0.944	UPSTREAM CG30340 DOWNSTREAM CG30339 INTRON CG1902	TF binding site mE1_TFBS_sens
3R	18681217	3R_18681217_SNP [dm3] 3R_22855495_SNP [dm6]	C	A	4.043e^-4	0.944	INTERGENIC
2L	9149834	2L_9149834_SNP [dm3] 2L_9149834_SNP [dm6]	G	T	4.050e^-4	0.944	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11388786	2R_11388786_SNP [dm3] 2R_15501281_SNP [dm6]	G	A	4.057e^-4	0.944	SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
3R	1425926	3R_1425926_SNP [dm3] 3R_5600204_SNP [dm6]	C	T	4.060e^-4	0.944	UTR_5_PRIME kra UPSTREAM kra INTRON kra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26635396	3R_26635396_INS [dm3] 3R_30809674_INS [dm6]	T	TCT	4.064e^-4	0.944	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3795981	X_3795981_SNP [dm3] X_3901948_SNP [dm6]	A	G	4.066e^-4	0.944	SYNONYMOUS_CODING CG42541
2R	11048163	2R_11048163_SNP [dm3] 2R_15160658_SNP [dm6]	G	T	4.068e^-4	0.944	INTRON igl
2R	11388834	2R_11388834_SNP [dm3] 2R_15501329_SNP [dm6]	A	T	4.082e^-4	0.944	SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
3R	21021456	3R_21021456_SNP [dm3] 3R_25195734_SNP [dm6]	A	T	4.085e^-4	0.944	INTRON CG13653	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18579976	3R_18579976_SNP [dm3] 3R_22754254_SNP [dm6]	A	G	4.112e^-4	0.944	UPSTREAM CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18101400	2R_18101400_SNP [dm3] 2R_22213895_SNP [dm6]	C	T	4.112e^-4	0.944	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16647292	2R_16647292_SNP [dm3] 2R_20759787_SNP [dm6]	G	T	4.118e^-4	0.944	INTERGENIC
3R	20182790	3R_20182790_SNP [dm3] 3R_24357068_SNP [dm6]	T	C	4.126e^-4	0.944	NON_SYNONYMOUS_CODING Golgin84 DOWNSTREAM CG6454	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6591874	2R_6591874_SNP [dm3] 2R_10704369_SNP [dm6]	G	A	4.127e^-4	0.944	INTRON stan
3R	21579387	3R_21579387_SNP [dm3] 3R_25753665_SNP [dm6]	A	T	4.127e^-4	0.944	UPSTREAM LpR1 INTRON LpR1
3R	19517983	3R_19517983_SNP [dm3] 3R_23692261_SNP [dm6]	C	T	4.127e^-4	0.944	NON_SYNONYMOUS_CODING CG10254
2R	18845321	2R_18845321_SNP [dm3] 2R_22957798_SNP [dm6]	T	A	4.130e^-4	0.944	UPSTREAM CR44780 INTERGENIC
3L	6114523	3L_6114523_DEL [dm3] 3L_6121423_DEL [dm6]	AA	T	4.136e^-4	0.944	INTRON Ets65A
3L	2377472	3L_2377472_INS [dm3] 3L_2377472_INS [dm6]	A	AAA	4.137e^-4	0.944	UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12666753	X_12666753_SNP [dm3] X_12772720_SNP [dm6]	A	G	4.141e^-4	0.944	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG32647
3R	10168582	3R_10168582_DEL [dm3] 3R_14342860_DEL [dm6]	GGCCAG	G	4.146e^-4	0.944	INTRON NK7.1
3L	8435548	3L_8435548_SNP [dm3] 3L_8442448_SNP [dm6]	A	G	4.151e^-4	0.944	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7799563	3L_7799563_SNP [dm3] 3L_7806463_SNP [dm6]	C	T	4.152e^-4	0.944	INTRON CG32369	TF binding site mE1_TFBS_Trl
X	7105783	X_7105783_SNP [dm3] X_7211750_SNP [dm6]	A	T	4.156e^-4	0.944	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	17182757	3R_17182757_SNP [dm3] 3R_21357035_SNP [dm6]	G	A	4.162e^-4	0.944	UTR_5_PRIME pre-mod_mdg4_-I UTR_3_PRIME pre-mod_mdg4_-J & 3 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	18678896	3R_18678896_SNP [dm3] 3R_22853174_SNP [dm6]	C	A	4.164e^-4	0.944	INTERGENIC
X	11285535	X_11285535_SNP [dm3] X_11391502_SNP [dm6]	G	T	4.165e^-4	0.944	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2R	13776815	2R_13776815_SNP [dm3] 2R_17889310_SNP [dm6]	T	G	4.176e^-4	0.944	INTRON Elk & 1 other	TF binding site mE1_TFBS_cad
2R	3165301	2R_3165301_SNP [dm3] 2R_7277796_SNP [dm6]	G	A	4.179e^-4	0.944	SYNONYMOUS_CODING Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16808137	3L_16808137_SNP [dm3] 3L_16815037_SNP [dm6]	T	A	4.179e^-4	0.944	INTRON nudC & 1 other
3L	10654507	3L_10654507_SNP [dm3] 3L_10661407_SNP [dm6]	G	T	4.183e^-4	0.944	UPSTREAM CG8003 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	8292008	2R_8292008_SNP [dm3] 2R_12404503_SNP [dm6]	C	A	4.190e^-4	0.944	UTR_3_PRIME Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14810449	3R_14810449_SNP [dm3] 3R_18984727_SNP [dm6]	A	G	4.195e^-4	0.944	SYNONYMOUS_CODING gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	13572709	X_13572709_SNP [dm3] X_13678676_SNP [dm6]	T	C	4.197e^-4	0.944	SYNONYMOUS_CODING CG12177 DOWNSTREAM CG11162
3R	27005723	3R_27005723_SNP [dm3] 3R_31180001_SNP [dm6]	G	A	4.200e^-4	0.944	SYNONYMOUS_CODING mesh INTRON mesh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	806875	2R_806875_SNP [dm3] 2R_4919370_SNP [dm6]	A	G	4.208e^-4	0.944	INTRON Ir41a	transposable element FlyBase
2L	7475925	2L_7475925_SNP [dm3] 2L_7475925_SNP [dm6]	T	A	4.210e^-4	0.944	SPLICE_SITE_REGION CG6441 INTRON Ziz & 1 other
X	16631258	X_16631258_SNP [dm3] X_16737225_SNP [dm6]	A	T	4.214e^-4	0.944	UPSTREAM TwdlZ INTRON CG9634
X	12328801	X_12328801_SNP [dm3] X_12434768_SNP [dm6]	C	T	4.215e^-4	0.944	INTRON Pkcdelta
2L	8995547	2L_8995547_SNP [dm3] 2L_8995547_SNP [dm6]	G	T	4.220e^-4	0.944	UTR_3_PRIME alien & 1 other INTRON alien
2L	3222081	2L_3222081_SNP [dm3] 2L_3222081_SNP [dm6]	C	T	4.224e^-4	0.944	INTERGENIC
2L	14676989	2L_14676989_SNP [dm3] 2L_14676989_SNP [dm6]	C	G	4.232e^-4	0.944	INTRON osp
3L	2509671	3L_2509671_SNP [dm3] 3L_2509671_SNP [dm6]	C	A	4.237e^-4	0.944	INTRON Spn
3L	17924556	3L_17924556_SNP [dm3] 3L_17931456_SNP [dm6]	C	T	4.240e^-4	0.944	INTERGENIC
3L	16806982	3L_16806982_SNP [dm3] 3L_16813882_SNP [dm6]	G	A	4.243e^-4	0.944	INTRON nudC & 1 other
3R	25769405	3R_25769405_SNP [dm3] 3R_29943683_SNP [dm6]	C	T	4.249e^-4	0.944	SYNONYMOUS_CODING CG15523
X	4207747	X_4207747_SNP [dm3] X_4313714_SNP [dm6]	T	G	4.260e^-4	0.944	DOWNSTREAM mei-9 INTRON CR44957
2L	13867717	2L_13867717_SNP [dm3] 2L_13867717_SNP [dm6]	C	G	4.262e^-4	0.944	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8833004	3L_8833004_SNP [dm3] 3L_8839904_SNP [dm6]	A	G	4.268e^-4	0.944	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4141827	3L_4141827_SNP [dm3] 3L_4141827_SNP [dm6]	G	T	4.269e^-4	0.944	SYNONYMOUS_CODING Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
3L	6560969	3L_6560969_SNP [dm3] 3L_6567869_SNP [dm6]	A	C	4.280e^-4	0.944	NON_SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_HSA
2L	3222013	2L_3222013_SNP [dm3] 2L_3222013_SNP [dm6]	A	C	4.286e^-4	0.944	INTERGENIC
3L	22312869	3L_22312869_SNP [dm3] 3L_22319769_SNP [dm6]	C	G	4.292e^-4	0.944	INTRON Ten-m	TF binding site mE1_TFBS_inv
2L	4491127	2L_4491127_SNP [dm3] 2L_4491127_SNP [dm6]	C	T	4.293e^-4	0.944	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	3227988	2R_3227988_SNP [dm3] 2R_7340483_SNP [dm6]	G	T	4.307e^-4	0.944	INTRON Dscam1
2R	17057084	2R_17057084_SNP [dm3] 2R_21169579_SNP [dm6]	G	A	4.310e^-4	0.944	NON_SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7701439	X_7701439_INS [dm3] X_7807406_INS [dm6]	A	ATAAAAA	4.313e^-4	0.944	INTERGENIC
3R	10218184	3R_10218184_SNP [dm3] 3R_14392462_SNP [dm6]	T	A	4.316e^-4	0.944	UTR_3_PRIME cv-c
2R	17286948	2R_17286948_SNP [dm3] 2R_21399443_SNP [dm6]	G	C	4.321e^-4	0.944	INTRON Sdc
2L	3838584	2L_3838584_DEL [dm3] 2L_3838584_DEL [dm6]	TT	T	4.328e^-4	0.944	UTR_3_PRIME slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13842413	2R_13842413_SNP [dm3] 2R_17954908_SNP [dm6]	C	T	4.337e^-4	0.944	DOWNSTREAM PpY-55A EXON CR44418
2L	10802204	2L_10802204_SNP [dm3] 2L_10802204_SNP [dm6]	G	T	4.337e^-4	0.944	EXON CR44581
X	3822312	X_3822312_SNP [dm3] X_3928279_SNP [dm6]	T	G	4.339e^-4	0.944	INTRON CG42541
3R	10902079	3R_10902079_DEL [dm3] 3R_15076357_DEL [dm6]	CC	C	4.340e^-4	0.944	INTRON dpr9
3L	10629196	3L_10629196_SNP [dm3] 3L_10636096_SNP [dm6]	G	A	4.340e^-4	0.944	SPLICE_SITE_REGION E_z_ INTRON E_z_
2L	6186654	2L_6186654_SNP [dm3] 2L_6186654_SNP [dm6]	C	G	4.345e^-4	0.944	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18354513	3R_18354513_SNP [dm3] 3R_22528791_SNP [dm6]	A	T	4.364e^-4	0.944	UPSTREAM CG5346 DOWNSTREAM CG33099 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1651497	3L_1651497_DEL [dm3] 3L_1651497_DEL [dm6]	CAGTC	C	4.365e^-4	0.944	UTR_3_PRIME CG13920 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3L	11999000	3L_11999000_SNP [dm3] 3L_12005900_SNP [dm6]	C	T	4.370e^-4	0.944	INTRON CG6928
2R	19561173	2R_19561173_SNP [dm3] 2R_23673650_SNP [dm6]	C	T	4.370e^-4	0.944	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3578134	3R_3578134_SNP [dm3] 3R_7752412_SNP [dm6]	G	A	4.374e^-4	0.944	INTERGENIC
3R	22146235	3R_22146235_SNP [dm3] 3R_26320513_SNP [dm6]	C	G	4.404e^-4	0.95	INTRON CG33970
2R	16647383	2R_16647383_SNP [dm3] 2R_20759878_SNP [dm6]	A	G	4.412e^-4	0.95	INTERGENIC
3R	26493896	3R_26493896_DEL [dm3] 3R_30668174_DEL [dm6]	GCACAG	G	4.413e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15523396	2L_15523396_SNP [dm3] 2L_15523396_SNP [dm6]	C	T	4.418e^-4	0.95	INTRON CR43761 EXON CR43761
X	12760840	X_12760840_SNP [dm3] X_12866807_SNP [dm6]	G	C	4.435e^-4	0.952	INTRON Pde9
2L	15142510	2L_15142510_SNP [dm3] 2L_15142510_SNP [dm6]	C	T	4.439e^-4	0.952	INTERGENIC
2L	12333294	2L_12333294_SNP [dm3] 2L_12333294_SNP [dm6]	C	G	4.454e^-4	0.953	INTERGENIC
3L	4957071	3L_4957071_SNP [dm3] 3L_4957071_SNP [dm6]	A	G	4.456e^-4	0.953	INTRON Con
3R	11903736	3R_11903736_SNP [dm3] 3R_16078014_SNP [dm6]	A	T	4.463e^-4	0.953	DOWNSTREAM CG32855 INTRON Mhcl
X	17212310	X_17212310_SNP [dm3] X_17318277_SNP [dm6]	G	C	4.464e^-4	0.953	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14592015	2L_14592015_SNP [dm3] 2L_14592015_SNP [dm6]	C	G	4.479e^-4	0.953	INTERGENIC
2L	8996260	2L_8996260_SNP [dm3] 2L_8996260_SNP [dm6]	G	A	4.482e^-4	0.953	SYNONYMOUS_CODING alien DOWNSTREAM CG17906	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8249492	X_8249492_SNP [dm3] X_8355459_SNP [dm6]	A	G	4.491e^-4	0.953	INTRON nAChRalpha3
2R	15962656	2R_15962656_SNP [dm3] 2R_20075151_SNP [dm6]	C	T	4.495e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1002715	X_1002715_SNP [dm3] X_1108682_SNP [dm6]	G	A	4.505e^-4	0.953	INTRON CG3655
X	15836670	X_15836670_SNP [dm3] X_15942637_SNP [dm6]	A	G	4.509e^-4	0.953	SYNONYMOUS_CODING CG8924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20399199	3R_20399199_SNP [dm3] 3R_24573477_SNP [dm6]	A	C	4.510e^-4	0.953	UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14064784	3R_14064784_SNP [dm3] 3R_18239062_SNP [dm6]	C	G	4.513e^-4	0.953	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
2L	11057636	2L_11057636_INS [dm3] 2L_11057636_INS [dm6]	G	GGTTCCAA	4.516e^-4	0.953	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9663094	2L_9663094_SNP [dm3] 2L_9663094_SNP [dm6]	T	G	4.516e^-4	0.953	INTERGENIC
2L	10912352	2L_10912352_SNP [dm3] 2L_10912352_SNP [dm6]	A	C	4.526e^-4	0.953	INTERGENIC
2L	13545348	2L_13545348_SNP [dm3] 2L_13545348_SNP [dm6]	A	G	4.529e^-4	0.953	INTRON B4
3R	11000777	3R_11000777_SNP [dm3] 3R_15175055_SNP [dm6]	T	G	4.531e^-4	0.953	DOWNSTREAM Mf INTRON Mf & 1 other
3L	15594297	3L_15594297_INS [dm3] 3L_15601197_INS [dm6]	C	CTATTC	4.536e^-4	0.953	INTRON RhoGAP71E
2L	11057614	2L_11057614_SNP [dm3] 2L_11057614_SNP [dm6]	A	C	4.563e^-4	0.955	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14331703	2L_14331703_SNP [dm3] 2L_14331703_SNP [dm6]	G	A	4.575e^-4	0.955	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2151052	X_2151052_SNP [dm3] X_2257019_SNP [dm6]	C	T	4.576e^-4	0.955	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5682386	2R_5682386_SNP [dm3] 2R_9794881_SNP [dm6]	C	T	4.576e^-4	0.955	START_GAINED CG1698 UTR_5_PRIME CG1698 INTRON CG1688 & 1 other	TF binding site mE1_TFBS_cad
X	3797241	X_3797241_SNP [dm3] X_3903208_SNP [dm6]	G	C	4.580e^-4	0.955	INTRON CG42541
3R	26494627	3R_26494627_SNP [dm3] 3R_30668905_SNP [dm6]	C	T	4.581e^-4	0.955	INTERGENIC
3R	20355834	3R_20355834_SNP [dm3] 3R_24530112_SNP [dm6]	T	C	4.584e^-4	0.955	SYNONYMOUS_CODING CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20775705	3L_20775705_SNP [dm3] 3L_20782605_SNP [dm6]	C	T	4.589e^-4	0.955	SYNONYMOUS_CODING CG11399	TF binding site mE1_TFBS_cad
2L	20866397	2L_20866397_SNP [dm3] 2L_20866397_SNP [dm6]	C	A	4.603e^-4	0.955	INTRON CG9338
3L	20778313	3L_20778313_SNP [dm3] 3L_20785213_SNP [dm6]	A	G	4.604e^-4	0.955	INTRON CG11399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6944752	X_6944752_SNP [dm3] X_7050719_SNP [dm6]	G	A	4.606e^-4	0.955	DOWNSTREAM nullo INTRON CG12541
2L	21075621	2L_21075621_SNP [dm3] 2L_21075621_SNP [dm6]	G	A	4.608e^-4	0.955	UTR_5_PRIME tadr
2R	6097209	2R_6097209_DEL [dm3] 2R_10209704_DEL [dm6]	TGACT	A	4.612e^-4	0.955	INTRON Hr46 & 1 other
3L	14065276	3L_14065276_SNP [dm3] 3L_14072176_SNP [dm6]	T	C	4.618e^-4	0.955	SYNONYMOUS_CODING Pex1 DOWNSTREAM CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	21067166	3R_21067166_SNP [dm3] 3R_25241444_SNP [dm6]	A	T	4.623e^-4	0.955	UTR_3_PRIME to UPSTREAM CG11854	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6560436	3L_6560436_SNP [dm3] 3L_6567336_SNP [dm6]	T	A	4.633e^-4	0.955	NON_SYNONYMOUS_CODING jv INTRON CG18769
2R	8453000	2R_8453000_SNP [dm3] 2R_12565495_SNP [dm6]	G	A	4.635e^-4	0.955	UPSTREAM CG33775 & 1 other INTERGENIC
2L	9380765	2L_9380765_SNP [dm3] 2L_9380765_SNP [dm6]	G	A	4.636e^-4	0.955	INTRON Shawl
3L	5340071	3L_5340071_SNP [dm3] 3L_5346971_SNP [dm6]	C	G	4.645e^-4	0.955	INTRON lama
2R	5290874	2R_5290874_SNP [dm3] 2R_9403369_SNP [dm6]	A	C	4.658e^-4	0.955	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26747945	3R_26747945_SNP [dm3] 3R_30922223_SNP [dm6]	G	A	4.664e^-4	0.955	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4372485	3L_4372485_DEL [dm3] 3L_4372485_DEL [dm6]	TT	T	4.676e^-4	0.955	INTRON DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11945903	3R_11945903_SNP [dm3] 3R_16120181_SNP [dm6]	C	G	4.692e^-4	0.955	INTRON Sb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12273376	3R_12273376_SNP [dm3] 3R_16447654_SNP [dm6]	T	C	4.698e^-4	0.955	INTRON Pak3
2L	13867677	2L_13867677_SNP [dm3] 2L_13867677_SNP [dm6]	G	T	4.699e^-4	0.955	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7801514	3L_7801514_SNP [dm3] 3L_7808414_SNP [dm6]	T	A	4.702e^-4	0.955	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18001386	3R_18001386_SNP [dm3] 3R_22175664_SNP [dm6]	C	T	4.705e^-4	0.955	DOWNSTREAM SKIP INTRON SKIP
2L	13893764	2L_13893764_SNP [dm3] 2L_13893764_SNP [dm6]	T	C	4.710e^-4	0.955	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	19935177	3R_19935177_SNP [dm3] 3R_24109455_SNP [dm6]	G	A	4.722e^-4	0.955	SYNONYMOUS_CODING CG18428 UPSTREAM CG18428 & 1 other DOWNSTREAM CG13605	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14472649	2R_14472649_SNP [dm3] 2R_18585144_SNP [dm6]	T	A	4.734e^-4	0.955	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	18236487	2R_18236487_SNP [dm3] 2R_22348982_SNP [dm6]	G	T	4.743e^-4	0.955	DOWNSTREAM CG11298 INTRON Liprin-gamma
2R	14492261	2R_14492261_SNP [dm3] 2R_18604756_SNP [dm6]	C	T	4.752e^-4	0.955	INTRON GEFmeso	TF binding site mE1_TFBS_inv
2R	20011248	2R_20011248_SNP [dm3] 2R_24123725_SNP [dm6]	T	A	4.754e^-4	0.955	DOWNSTREAM CG3257 INTRON CG43775 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9045586	2L_9045586_SNP [dm3] 2L_9045586_SNP [dm6]	T	A	4.757e^-4	0.955	INTERGENIC
3L	14431791	3L_14431791_SNP [dm3] 3L_14438691_SNP [dm6]	C	T	4.758e^-4	0.955	INTRON bbg	TF binding site mE1_TFBS_inv
3R	12924328	3R_12924328_SNP [dm3] 3R_17098606_SNP [dm6]	C	T	4.758e^-4	0.955	UTR_5_PRIME cher INTRON cher
3R	21570320	3R_21570320_SNP [dm3] 3R_25744598_SNP [dm6]	G	T	4.768e^-4	0.955	INTRON LpR1
2R	13226097	2R_13226097_SNP [dm3] 2R_17338592_SNP [dm6]	G	A	4.768e^-4	0.955	INTRON mbl
3L	10091543	3L_10091543_SNP [dm3] 3L_10098443_SNP [dm6]	T	C	4.770e^-4	0.955	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	10064884	3L_10064884_DEL [dm3] 3L_10071784_DEL [dm6]	GCGTCATTAACAT...	G	4.777e^-4	0.955	CODON_DELETION dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA
3R	1443656	3R_1443656_SNP [dm3] 3R_5617934_SNP [dm6]	T	A	4.793e^-4	0.955	INTRON Spec2
3L	12418657	3L_12418657_SNP [dm3] 3L_12425557_SNP [dm6]	T	C	4.805e^-4	0.955	INTRON toe	TF binding site mE1_TFBS_cad
X	8328135	X_8328135_SNP [dm3] X_8434102_SNP [dm6]	G	C	4.808e^-4	0.955	UTR_3_PRIME CG12125 UPSTREAM CG32712 DOWNSTREAM CG12125
2L	14676981	2L_14676981_SNP [dm3] 2L_14676981_SNP [dm6]	C	T	4.814e^-4	0.955	INTRON osp
3L	24153466	3L_24153466_SNP [dm3] 3L_24160366_SNP [dm6]	C	T	4.815e^-4	0.955	INTRON Snap25
3L	4793782	3L_4793782_INS [dm3] 3L_4793782_INS [dm6]	T	TT	4.815e^-4	0.955	INTRON RhoGEF64C
3L	6376896	3L_6376896_SNP [dm3] 3L_6383796_SNP [dm6]	G	A	4.816e^-4	0.955	INTERGENIC
2L	3903543	2L_3903543_SNP [dm3] 2L_3903543_SNP [dm6]	T	A	4.835e^-4	0.955	UTR_3_PRIME fred UPSTREAM capu
X	11940135	X_11940135_INS [dm3] X_12046102_INS [dm6]	A	AA	4.841e^-4	0.955	INTRON CR43960 & 1 other
2L	20938639	2L_20938639_SNP [dm3] 2L_20938639_SNP [dm6]	G	T	4.845e^-4	0.955	INTERGENIC
3R	14858192	3R_14858192_SNP [dm3] 3R_19032470_SNP [dm6]	G	A	4.852e^-4	0.955	DOWNSTREAM CG6013 INTERGENIC
2L	20943713	2L_20943713_SNP [dm3] 2L_20943713_SNP [dm6]	T	C	4.858e^-4	0.955	INTERGENIC
2R	16732061	2R_16732061_SNP [dm3] 2R_20844556_SNP [dm6]	A	C	4.860e^-4	0.955	INTERGENIC
2R	16419944	2R_16419944_SNP [dm3] 2R_20532439_SNP [dm6]	C	A	4.872e^-4	0.955	UPSTREAM CG30154 EXON CR44651
2R	17935340	2R_17935340_SNP [dm3] 2R_22047835_SNP [dm6]	A	G	4.881e^-4	0.955	INTERGENIC
3R	26464113	3R_26464113_SNP [dm3] 3R_30638391_SNP [dm6]	G	A	4.887e^-4	0.955	INTERGENIC
2R	18101569	2R_18101569_SNP [dm3] 2R_22214064_SNP [dm6]	A	T	4.888e^-4	0.955	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9995294	2L_9995294_SNP [dm3] 2L_9995294_SNP [dm6]	C	T	4.888e^-4	0.955	UTR_3_PRIME bib DOWNSTREAM CG31875
3R	7846343	3R_7846343_SNP [dm3] 3R_12020621_SNP [dm6]	A	T	4.889e^-4	0.955	INTERGENIC
2R	10121149	2R_10121149_SNP [dm3] 2R_14233644_SNP [dm6]	A	G	4.894e^-4	0.955	SYNONYMOUS_CODING Opa1 UPSTREAM mir-1016	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5446029	2L_5446029_SNP [dm3] 2L_5446029_SNP [dm6]	T	A	4.900e^-4	0.955	INTERGENIC
2R	5487627	2R_5487627_SNP [dm3] 2R_9600122_SNP [dm6]	G	A	4.902e^-4	0.955	SYNONYMOUS_CODING CG30340 UPSTREAM clos DOWNSTREAM CG30338 INTRON CG1902
2R	5487630	2R_5487630_SNP [dm3] 2R_9600125_SNP [dm6]	G	A	4.902e^-4	0.955	SYNONYMOUS_CODING CG30340 UPSTREAM clos DOWNSTREAM CG30338 INTRON CG1902
2L	17547963	2L_17547963_SNP [dm3] 2L_17547963_SNP [dm6]	T	C	4.905e^-4	0.955	DOWNSTREAM CR45697 INTERGENIC
3L	1570483	3L_1570483_DEL [dm3] 3L_1570483_DEL [dm6]	AA	A	4.907e^-4	0.955	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21469854	X_21469854_SNP [dm3] X_21598827_SNP [dm6]	T	G	4.914e^-4	0.955	INTERGENIC
2R	11388270	2R_11388270_SNP [dm3] 2R_15500765_SNP [dm6]	T	A	4.937e^-4	0.955	SYNONYMOUS_CODING Ir52a
3R	15829628	3R_15829628_SNP [dm3] 3R_20003906_SNP [dm6]	T	C	4.940e^-4	0.955	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3L	7843556	3L_7843556_SNP [dm3] 3L_7850456_SNP [dm6]	A	T	4.941e^-4	0.955	INTRON Pdp1	regulatory region REDfly_CRMs
3R	13391194	3R_13391194_SNP [dm3] 3R_17565472_SNP [dm6]	G	A	4.950e^-4	0.955	SYNONYMOUS_CODING Hmx
2L	17723044	2L_17723044_SNP [dm3] 2L_17723044_SNP [dm6]	A	G	4.983e^-4	0.955	INTRON CadN	TF binding site BDTNP1_TFBS_dl
3L	6505688	3L_6505688_SNP [dm3] 3L_6512588_SNP [dm6]	A	G	4.986e^-4	0.955	INTRON sfl
2L	5973705	2L_5973705_INS [dm3] 2L_5973705_INS [dm6]	AGG	GTAT	4.992e^-4	0.955	INTRON chic
3L	11043639	3L_11043639_SNP [dm3] 3L_11050539_SNP [dm6]	G	C	4.997e^-4	0.955	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
X	19113826	X_19113826_SNP [dm3] X_19219793_SNP [dm6]	A	G	4.998e^-4	0.955	UPSTREAM CG7884 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18784732	2R_18784732_SNP [dm3] 2R_22897209_SNP [dm6]	A	T	5.005e^-4	0.955	INTRON nahoda
2L	14325491	2L_14325491_SNP [dm3] 2L_14325491_SNP [dm6]	C	T	5.015e^-4	0.955	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	2605328	3L_2605328_SNP [dm3] 3L_2605328_SNP [dm6]	G	T	5.020e^-4	0.955	INTRON Pxn
3L	22198129	3L_22198129_SNP [dm3] 3L_22205029_SNP [dm6]	C	T	5.024e^-4	0.955	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18965806	3R_18965806_SNP [dm3] 3R_23140084_SNP [dm6]	C	T	5.030e^-4	0.955	INTRON hh	TF binding site mE1_TFBS_cad
3R	4770973	3R_4770973_SNP [dm3] 3R_8945251_SNP [dm6]	C	T	5.032e^-4	0.955	UPSTREAM CG11964 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	17243704	2L_17243704_SNP [dm3] 2L_17243704_SNP [dm6]	T	G	5.037e^-4	0.955	INTRON beat-IIIc
3R	18481991	3R_18481991_SNP [dm3] 3R_22656269_SNP [dm6]	T	A	5.040e^-4	0.955	INTRON CG45058
X	12760722	X_12760722_SNP [dm3] X_12866689_SNP [dm6]	A	G	5.047e^-4	0.955	INTRON Pde9
3R	19322434	3R_19322434_SNP [dm3] 3R_23496712_SNP [dm6]	A	C	5.052e^-4	0.955	INTERGENIC
2L	8999531	2L_8999531_SNP [dm3] 2L_8999531_SNP [dm6]	A	T	5.066e^-4	0.955	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2L	8999543	2L_8999543_SNP [dm3] 2L_8999543_SNP [dm6]	G	A	5.066e^-4	0.955	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2L	8999508	2L_8999508_SNP [dm3] 2L_8999508_SNP [dm6]	C	T	5.067e^-4	0.955	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2R	12356377	2R_12356377_SNP [dm3] 2R_16468872_SNP [dm6]	G	A	5.074e^-4	0.955	NON_SYNONYMOUS_CODING CheB53b
2L	14677168	2L_14677168_SNP [dm3] 2L_14677168_SNP [dm6]	G	A	5.080e^-4	0.955	INTRON osp
2L	7088362	2L_7088362_INS [dm3] 2L_7088362_INS [dm6]	A	AATTCA	5.088e^-4	0.955	INTERGENIC
3R	26493917	3R_26493917_SNP [dm3] 3R_30668195_SNP [dm6]	G	T	5.091e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
X	2514438	X_2514438_SNP [dm3] X_2620405_SNP [dm6]	T	C	5.094e^-4	0.955	SYNONYMOUS_CODING Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3517387	2R_3517387_SNP [dm3] 2R_7629882_SNP [dm6]	C	T	5.100e^-4	0.955	INTRON CG43340
2L	8235888	2L_8235888_SNP [dm3] 2L_8235888_SNP [dm6]	A	C	5.102e^-4	0.955	INTRON Pvr
X	13460706	X_13460706_SNP [dm3] X_13566673_SNP [dm6]	C	T	5.107e^-4	0.955	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
2L	3598033	2L_3598033_INS [dm3] 2L_3598033_INS [dm6]	T	TCG	5.107e^-4	0.955	INTERGENIC
2L	3598040	2L_3598040_SNP [dm3] 2L_3598040_SNP [dm6]	G	A	5.107e^-4	0.955	INTERGENIC
2L	3598043	2L_3598043_SNP [dm3] 2L_3598043_SNP [dm6]	T	A	5.107e^-4	0.955	INTERGENIC
2L	3598046	2L_3598046_SNP [dm3] 2L_3598046_SNP [dm6]	T	C	5.107e^-4	0.955	INTERGENIC
2L	3598051	2L_3598051_SNP [dm3] 2L_3598051_SNP [dm6]	C	G	5.107e^-4	0.955	INTERGENIC
2R	20010042	2R_20010042_SNP [dm3] 2R_24122519_SNP [dm6]	G	A	5.107e^-4	0.955	UTR_3_PRIME CG3257 DOWNSTREAM CG43775 & 2 others
3L	10803715	3L_10803715_SNP [dm3] 3L_10810615_SNP [dm6]	C	A	5.108e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22208020	X_22208020_SNP [dm3] X_22806184_SNP [dm6]	A	T	5.116e^-4	0.955	DOWNSTREAM CR45464 INTERGENIC
2L	14687968	2L_14687968_SNP [dm3] 2L_14687968_SNP [dm6]	T	A	5.125e^-4	0.955	INTRON osp	TF binding site mE1_TFBS_Ubx
3R	23130947	3R_23130947_SNP [dm3] 3R_27305225_SNP [dm6]	A	T	5.128e^-4	0.955	INTRON CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7801511	3L_7801511_INS [dm3] 3L_7808411_INS [dm6]	T	TAAGCAAA	5.136e^-4	0.955	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7801521	3L_7801521_SNP [dm3] 3L_7808421_SNP [dm6]	T	C	5.136e^-4	0.955	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

PC4_Nutri_Score_Low phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results