DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.124e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06117
In_3R_K	0.07148

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.6782	0.0551
In_2L_t	8.6549	0.0132

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1832 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16904703	3R_16904703_SNP [dm3] 3R_21078981_SNP [dm6]	G	T	7.137e^-7	0.804	INTRON HHEX
3L	18111122	3L_18111122_SNP [dm3] 3L_18118022_SNP [dm6]	C	A	1.557e^-6	0.804	UTR_3_PRIME CG32195 INTRON CG7341
3R	25504118	3R_25504118_SNP [dm3] 3R_29678396_SNP [dm6]	A	C	1.669e^-6	0.804	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4370437	3R_4370437_SNP [dm3] 3R_8544715_SNP [dm6]	T	C	2.050e^-6	0.804	UPSTREAM CR45575 INTERGENIC
X	9689792	X_9689792_SNP [dm3] X_9795759_SNP [dm6]	A	G	2.166e^-6	0.804	INTRON CG32698
3R	4370439	3R_4370439_SNP [dm3] 3R_8544717_SNP [dm6]	T	G	2.731e^-6	0.804	UPSTREAM CR45575 INTERGENIC
X	9689793	X_9689793_SNP [dm3] X_9795760_SNP [dm6]	G	A	3.705e^-6	0.804	INTRON CG32698
2L	3919325	2L_3919325_SNP [dm3] 2L_3919325_SNP [dm6]	A	T	3.814e^-6	0.804	SYNONYMOUS_CODING fred
3R	25445396	3R_25445396_SNP [dm3] 3R_29619674_SNP [dm6]	C	T	4.045e^-6	0.804	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8571273	X_8571273_SNP [dm3] X_8677240_SNP [dm6]	T	C	4.520e^-6	0.804	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3R	25503463	3R_25503463_SNP [dm3] 3R_29677741_SNP [dm6]	A	T	5.325e^-6	0.804	INTRON Cap-D2	TF binding site mE1_TFBS_cad
3R	25504580	3R_25504580_SNP [dm3] 3R_29678858_SNP [dm6]	T	C	5.470e^-6	0.804	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
2R	12861676	2R_12861676_SNP [dm3] 2R_16974171_SNP [dm6]	A	G	5.603e^-6	0.804	INTRON Cbp53E
X	8571326	X_8571326_SNP [dm3] X_8677293_SNP [dm6]	A	C	6.181e^-6	0.804	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	9584906	2L_9584906_SNP [dm3] 2L_9584906_SNP [dm6]	T	G	6.434e^-6	0.804	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	9689759	X_9689759_SNP [dm3] X_9795726_SNP [dm6]	T	A	7.107e^-6	0.829	INTRON CG32698
X	2798928	X_2798928_SNP [dm3] X_2904895_SNP [dm6]	C	A	7.772e^-6	0.829	INTRON kirre
3R	25445395	3R_25445395_SNP [dm3] 3R_29619673_SNP [dm6]	C	T	8.362e^-6	0.829	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8086584	X_8086584_SNP [dm3] X_8192551_SNP [dm6]	C	G	8.848e^-6	0.829	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	9.818e^-6	0.829	INTERGENIC
X	9689938	X_9689938_SNP [dm3] X_9795905_SNP [dm6]	C	A	1.066e^-5	0.829	INTRON CG32698
3L	19067658	3L_19067658_SNP [dm3] 3L_19074558_SNP [dm6]	A	T	1.135e^-5	0.829	INTRON Mkp3
3L	9203516	3L_9203516_SNP [dm3] 3L_9210416_SNP [dm6]	G	A	1.143e^-5	0.829	INTERGENIC
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	1.146e^-5	0.829	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25445399	3R_25445399_SNP [dm3] 3R_29619677_SNP [dm6]	G	T	1.390e^-5	0.829	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
4	498765	4_498765_SNP [dm3] 4_478139_SNP [dm6]	T	G	1.458e^-5	0.829	INTRON Asator
3R	16867461	3R_16867461_SNP [dm3] 3R_21041739_SNP [dm6]	A	G	1.487e^-5	0.829	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11584980	3L_11584980_SNP [dm3] 3L_11591880_SNP [dm6]	G	A	1.549e^-5	0.829	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16869153	3R_16869153_SNP [dm3] 3R_21043431_SNP [dm6]	C	A	1.578e^-5	0.829	UPSTREAM Dhc93AB & 1 other INTERGENIC
3L	7015805	3L_7015805_INS [dm3] 3L_7022705_INS [dm6]	T	TGT	1.588e^-5	0.829	INTRON Mp
2R	9089396	2R_9089396_SNP [dm3] 2R_13201891_SNP [dm6]	A	G	1.604e^-5	0.829	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9130441	3L_9130441_SNP [dm3] 3L_9137341_SNP [dm6]	T	C	1.636e^-5	0.829	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16905820	3R_16905820_SNP [dm3] 3R_21080098_SNP [dm6]	C	A	1.801e^-5	0.829	INTRON HHEX
3L	20965644	3L_20965644_SNP [dm3] 3L_20972544_SNP [dm6]	A	G	1.802e^-5	0.829	SYNONYMOUS_CODING CG33286
3L	2603556	3L_2603556_SNP [dm3] 3L_2603556_SNP [dm6]	G	A	1.839e^-5	0.829	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13982361	3L_13982361_SNP [dm3] 3L_13989261_SNP [dm6]	G	A	1.878e^-5	0.829	DOWNSTREAM CG9040 INTRON CG17364
3L	2604195	3L_2604195_SNP [dm3] 3L_2604195_SNP [dm6]	G	A	1.944e^-5	0.829	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4749454	2L_4749454_SNP [dm3] 2L_4749454_SNP [dm6]	A	G	1.946e^-5	0.829	INTRON CG15630
3L	19070870	3L_19070870_SNP [dm3] 3L_19077770_SNP [dm6]	G	A	1.960e^-5	0.829	INTRON Mkp3
2L	1138074	2L_1138074_SNP [dm3] 2L_1138074_SNP [dm6]	C	T	1.983e^-5	0.829	INTRON CG4577
3L	953049	3L_953049_SNP [dm3] 3L_953049_SNP [dm6]	C	T	2.195e^-5	0.829	INTRON Glut1
3L	953194	3L_953194_SNP [dm3] 3L_953194_SNP [dm6]	C	T	2.195e^-5	0.829	INTRON Glut1
3L	953891	3L_953891_SNP [dm3] 3L_953891_SNP [dm6]	G	T	2.195e^-5	0.829	INTRON Glut1
2L	3922172	2L_3922172_SNP [dm3] 2L_3922172_SNP [dm6]	G	A	2.206e^-5	0.829	INTRON fred
2L	3396644	2L_3396644_SNP [dm3] 2L_3396644_SNP [dm6]	A	G	2.221e^-5	0.829	DOWNSTREAM CR44792 INTERGENIC
X	8571630	X_8571630_SNP [dm3] X_8677597_SNP [dm6]	T	A	2.261e^-5	0.829	INTRON CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	8315103	X_8315103_SNP [dm3] X_8421070_SNP [dm6]	T	C	2.315e^-5	0.829	UPSTREAM Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9089438	2R_9089438_SNP [dm3] 2R_13201933_SNP [dm6]	A	G	2.369e^-5	0.829	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16866242	3R_16866242_SNP [dm3] 3R_21040520_SNP [dm6]	A	G	2.425e^-5	0.829	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20172018	3L_20172018_SNP [dm3] 3L_20178918_SNP [dm6]	C	T	2.460e^-5	0.829	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6618907	X_6618907_SNP [dm3] X_6724874_SNP [dm6]	C	G	2.467e^-5	0.829	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
3L	4186998	3L_4186998_SNP [dm3] 3L_4186998_SNP [dm6]	A	T	2.515e^-5	0.829	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	15404088	2L_15404088_SNP [dm3] 2L_15404088_SNP [dm6]	T	A	2.528e^-5	0.829	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16869106	3R_16869106_SNP [dm3] 3R_21043384_SNP [dm6]	G	A	2.552e^-5	0.829	UPSTREAM Dhc93AB & 1 other INTERGENIC
2L	1184146	2L_1184146_SNP [dm3] 2L_1184146_SNP [dm6]	T	A	2.581e^-5	0.829	UTR_5_PRIME Tgt UPSTREAM CG5126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	16991883	3R_16991883_SNP [dm3] 3R_21166161_SNP [dm6]	T	C	2.615e^-5	0.829	SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
2L	3920738	2L_3920738_SNP [dm3] 2L_3920738_SNP [dm6]	T	G	2.651e^-5	0.829	INTRON fred
X	13795161	X_13795161_SNP [dm3] X_13901128_SNP [dm6]	A	C	2.708e^-5	0.829	INTRON mamo
3R	16864900	3R_16864900_DEL [dm3] 3R_21039178_DEL [dm6]	TGCGA	AT	2.880e^-5	0.829	INTRON Dhc93AB
3R	16870033	3R_16870033_SNP [dm3] 3R_21044311_SNP [dm6]	T	G	2.887e^-5	0.829	NON_SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2R	16767008	2R_16767008_SNP [dm3] 2R_20879503_SNP [dm6]	A	G	2.927e^-5	0.829	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
3L	19072289	3L_19072289_SNP [dm3] 3L_19079189_SNP [dm6]	C	T	2.987e^-5	0.829	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6619085	X_6619085_SNP [dm3] X_6725052_SNP [dm6]	G	A	2.996e^-5	0.829	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	7207001	2L_7207001_SNP [dm3] 2L_7207001_SNP [dm6]	T	G	3.035e^-5	0.829	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3R	25445452	3R_25445452_SNP [dm3] 3R_29619730_SNP [dm6]	C	T	3.066e^-5	0.829	SYNONYMOUS_CODING CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10801416	2L_10801416_SNP [dm3] 2L_10801416_SNP [dm6]	C	A	3.112e^-5	0.829	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
3L	10624348	3L_10624348_SNP [dm3] 3L_10631248_SNP [dm6]	G	T	3.176e^-5	0.829	UPSTREAM hay & 1 other INTRON hay & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11501282	3R_11501282_SNP [dm3] 3R_15675560_SNP [dm6]	T	C	3.184e^-5	0.829	INTRON pxb
3R	16867500	3R_16867500_SNP [dm3] 3R_21041778_SNP [dm6]	T	C	3.254e^-5	0.829	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6618908	X_6618908_SNP [dm3] X_6724875_SNP [dm6]	C	T	3.399e^-5	0.829	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
4	255510	4_255510_SNP [dm3] 4_234884_SNP [dm6]	C	T	3.420e^-5	0.829	SYNONYMOUS_CODING CG1674 INTRON CG1674
2R	12861679	2R_12861679_SNP [dm3] 2R_16974174_SNP [dm6]	C	T	3.423e^-5	0.829	INTRON Cbp53E
X	8315109	X_8315109_SNP [dm3] X_8421076_SNP [dm6]	G	C	3.444e^-5	0.829	UPSTREAM Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5481087	3R_5481087_SNP [dm3] 3R_9655365_SNP [dm6]	A	C	3.487e^-5	0.829	INTRON CG9492	TF binding site mE1_TFBS_chinmo
2L	3051197	2L_3051197_SNP [dm3] 2L_3051197_SNP [dm6]	C	T	3.492e^-5	0.829	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
3L	19072288	3L_19072288_SNP [dm3] 3L_19079188_SNP [dm6]	C	T	3.506e^-5	0.829	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	3.640e^-5	0.829	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
3L	7015803	3L_7015803_SNP [dm3] 3L_7022703_SNP [dm6]	T	G	3.694e^-5	0.829	INTRON Mp
3R	16991762	3R_16991762_SNP [dm3] 3R_21166040_SNP [dm6]	A	C	3.715e^-5	0.829	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	3919358	2L_3919358_SNP [dm3] 2L_3919358_SNP [dm6]	G	A	3.802e^-5	0.829	SYNONYMOUS_CODING fred
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	3.823e^-5	0.829	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
3R	15169461	3R_15169461_SNP [dm3] 3R_19343739_SNP [dm6]	A	T	3.866e^-5	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18916907	3R_18916907_SNP [dm3] 3R_23091185_SNP [dm6]	C	T	3.887e^-5	0.829	UPSTREAM CG6726 & 1 other INTRON CG13830
3L	7411004	3L_7411004_SNP [dm3] 3L_7417904_SNP [dm6]	C	T	3.888e^-5	0.829	INTERGENIC
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	3.934e^-5	0.829	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	3921053	2L_3921053_SNP [dm3] 2L_3921053_SNP [dm6]	C	T	3.953e^-5	0.829	INTRON fred
2L	3922937	2L_3922937_SNP [dm3] 2L_3922937_SNP [dm6]	C	A	4.052e^-5	0.829	INTRON fred
3R	16865891	3R_16865891_SNP [dm3] 3R_21040169_SNP [dm6]	A	G	4.079e^-5	0.829	SYNONYMOUS_CODING Dhc93AB
3L	10626772	3L_10626772_SNP [dm3] 3L_10633672_SNP [dm6]	G	A	4.133e^-5	0.829	SYNONYMOUS_CODING hay DOWNSTREAM E_z_ INTRON CG34001
3R	25503719	3R_25503719_SNP [dm3] 3R_29677997_SNP [dm6]	A	G	4.143e^-5	0.829	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
3L	1235378	3L_1235378_SNP [dm3] 3L_1235378_SNP [dm6]	A	T	4.151e^-5	0.829	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
2L	3923090	2L_3923090_SNP [dm3] 2L_3923090_SNP [dm6]	T	G	4.199e^-5	0.829	INTRON fred
2L	3922923	2L_3922923_MNP [dm3] 2L_3922923_MNP [dm6]	GGGCA	TAATT	4.282e^-5	0.829	INTRON fred
3R	19145269	3R_19145269_SNP [dm3] 3R_23319547_SNP [dm6]	G	T	4.330e^-5	0.829	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25510662	3R_25510662_SNP [dm3] 3R_29684940_SNP [dm6]	T	C	4.353e^-5	0.829	SYNONYMOUS_CODING Gycalpha99B DOWNSTREAM Obp99c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2798897	X_2798897_SNP [dm3] X_2904864_SNP [dm6]	A	G	4.394e^-5	0.829	INTRON kirre
3R	16865119	3R_16865119_SNP [dm3] 3R_21039397_SNP [dm6]	A	G	4.513e^-5	0.829	SYNONYMOUS_CODING Dhc93AB
3R	25445500	3R_25445500_SNP [dm3] 3R_29619778_SNP [dm6]	C	T	4.589e^-5	0.829	SYNONYMOUS_CODING CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	5847501	2L_5847501_SNP [dm3] 2L_5847501_SNP [dm6]	A	C	4.705e^-5	0.829	INTRON TrissinR
X	8044981	X_8044981_SNP [dm3] X_8150948_SNP [dm6]	G	C	4.757e^-5	0.829	UTR_3_PRIME Gbeta5 DOWNSTREAM CG10959	TF binding site mE1_TFBS_cad
X	2995375	X_2995375_SNP [dm3] X_3101342_SNP [dm6]	T	A	4.767e^-5	0.829	INTRON kirre
3R	15873825	3R_15873825_SNP [dm3] 3R_20048103_SNP [dm6]	C	A	4.776e^-5	0.829	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	637767	2L_637767_SNP [dm3] 2L_637767_SNP [dm6]	G	A	4.791e^-5	0.829	INTERGENIC
2L	11014756	2L_11014756_SNP [dm3] 2L_11014756_SNP [dm6]	A	C	4.794e^-5	0.829	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3L	3938803	3L_3938803_SNP [dm3] 3L_3938803_SNP [dm6]	T	C	4.911e^-5	0.829	SYNONYMOUS_CODING CG12766 UPSTREAM CG10866
X	20292273	X_20292273_DEL [dm3] X_20421246_DEL [dm6]	GG	G	4.917e^-5	0.829	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
3L	18111112	3L_18111112_SNP [dm3] 3L_18118012_SNP [dm6]	T	C	5.005e^-5	0.829	UTR_3_PRIME CG32195 INTRON CG7341
3L	3944533	3L_3944533_SNP [dm3] 3L_3944533_SNP [dm6]	C	A	5.021e^-5	0.829	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	10039963	3L_10039963_SNP [dm3] 3L_10046863_SNP [dm6]	T	G	5.082e^-5	0.829	INTRON dpr6
2L	7103126	2L_7103126_SNP [dm3] 2L_7103126_SNP [dm6]	A	G	5.087e^-5	0.829	INTRON Pvf3
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	5.109e^-5	0.829	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	5889400	2L_5889400_SNP [dm3] 2L_5889400_SNP [dm6]	C	T	5.160e^-5	0.829	DOWNSTREAM CR44578 INTERGENIC
X	8088015	X_8088015_SNP [dm3] X_8193982_SNP [dm6]	T	C	5.183e^-5	0.829	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3920739	2L_3920739_SNP [dm3] 2L_3920739_SNP [dm6]	C	T	5.242e^-5	0.829	INTRON fred
2R	9775401	2R_9775401_SNP [dm3] 2R_13887896_SNP [dm6]	A	T	5.336e^-5	0.829	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8754524	2L_8754524_SNP [dm3] 2L_8754524_SNP [dm6]	C	T	5.358e^-5	0.829	INTERGENIC
3R	15138791	3R_15138791_SNP [dm3] 3R_19313069_SNP [dm6]	A	G	5.377e^-5	0.829	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3922929	2L_3922929_DEL [dm3] 2L_3922929_DEL [dm6]	CC	A	5.378e^-5	0.829	INTRON fred
X	9689979	X_9689979_SNP [dm3] X_9795946_SNP [dm6]	T	C	5.388e^-5	0.829	INTRON CG32698
3L	3939295	3L_3939295_SNP [dm3] 3L_3939295_SNP [dm6]	T	A	5.390e^-5	0.829	NON_SYNONYMOUS_CODING CG12766	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13730732	2R_13730732_SNP [dm3] 2R_17843227_SNP [dm6]	T	C	5.400e^-5	0.829	UPSTREAM olf186-F DOWNSTREAM grh INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8300870	3L_8300870_SNP [dm3] 3L_8307770_SNP [dm6]	T	A	5.494e^-5	0.829	UPSTREAM Gr66a INTRON BI-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	2604572	3L_2604572_DEL [dm3] 3L_2604572_DEL [dm6]	GG	G	5.529e^-5	0.829	INTRON Pxn	TF binding site mE1_TFBS_chinmo
X	17304939	X_17304939_INS [dm3] X_17410906_INS [dm6]	C	CACTC	5.539e^-5	0.829	INTERGENIC
X	8088192	X_8088192_SNP [dm3] X_8194159_SNP [dm6]	T	A	5.626e^-5	0.829	INTRON sdt	TF binding site mE1_TFBS_bab1
2L	9236455	2L_9236455_SNP [dm3] 2L_9236455_SNP [dm6]	A	G	5.675e^-5	0.829	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	3922934	2L_3922934_SNP [dm3] 2L_3922934_SNP [dm6]	G	A	5.719e^-5	0.829	INTRON fred
X	4859941	X_4859941_SNP [dm3] X_4965908_SNP [dm6]	G	T	5.726e^-5	0.829	INTRON CR44833	regulatory region REDfly_CRMs
3R	20844671	3R_20844671_SNP [dm3] 3R_25018949_SNP [dm6]	T	A	5.764e^-5	0.829	SYNONYMOUS_CODING tnc
3R	16991750	3R_16991750_DEL [dm3] 3R_21166028_DEL [dm6]	AA	A	5.792e^-5	0.829	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	3922849	2L_3922849_SNP [dm3] 2L_3922849_SNP [dm6]	T	G	5.824e^-5	0.829	INTRON fred
2L	10801420	2L_10801420_SNP [dm3] 2L_10801420_SNP [dm6]	T	A	5.900e^-5	0.829	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	15270655	2L_15270655_SNP [dm3] 2L_15270655_SNP [dm6]	T	A	5.936e^-5	0.829	UPSTREAM Cul3 INTRON Cul3	TF binding site BDTNP1_TFBS_dl
2L	7103099	2L_7103099_SNP [dm3] 2L_7103099_SNP [dm6]	T	C	6.006e^-5	0.829	INTRON Pvf3
3R	16866270	3R_16866270_SNP [dm3] 3R_21040548_SNP [dm6]	C	T	6.031e^-5	0.829	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9775407	2R_9775407_SNP [dm3] 2R_13887902_SNP [dm6]	T	C	6.053e^-5	0.829	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8087797	X_8087797_SNP [dm3] X_8193764_SNP [dm6]	C	A	6.057e^-5	0.829	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	3938432	X_3938432_SNP [dm3] X_4044399_SNP [dm6]	C	T	6.149e^-5	0.831	INTERGENIC
2L	7192249	2L_7192249_SNP [dm3] 2L_7192249_SNP [dm6]	C	T	6.162e^-5	0.831	INTRON CG4497	TF binding site mE1_TFBS_inv
2R	10326051	2R_10326051_SNP [dm3] 2R_14438546_SNP [dm6]	C	G	6.249e^-5	0.837	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2615029	3L_2615029_SNP [dm3] 3L_2615029_SNP [dm6]	C	G	6.348e^-5	0.842	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	2070648	2L_2070648_SNP [dm3] 2L_2070648_SNP [dm6]	C	T	6.378e^-5	0.842	INTRON dpr3
2L	5666632	2L_5666632_SNP [dm3] 2L_5666632_SNP [dm6]	A	G	6.425e^-5	0.842	INTRON Hsp60C
3R	19160091	3R_19160091_SNP [dm3] 3R_23334369_SNP [dm6]	C	T	6.589e^-5	0.855	INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6780385	3L_6780385_SNP [dm3] 3L_6787285_SNP [dm6]	C	T	6.612e^-5	0.855	UPSTREAM CR45759 INTERGENIC
X	2671058	X_2671058_SNP [dm3] X_2777025_SNP [dm6]	G	T	6.732e^-5	0.864	INTRON kirre
3L	3936778	3L_3936778_SNP [dm3] 3L_3936778_SNP [dm6]	G	A	7.065e^-5	0.897	UTR_3_PRIME CG10866 DOWNSTREAM Eip63F-2	TF binding site mE1_TFBS_cad
2L	3287165	2L_3287165_SNP [dm3] 2L_3287165_SNP [dm6]	A	C	7.134e^-5	0.897	UPSTREAM CR44485 INTERGENIC
4	247268	4_247268_SNP [dm3] 4_226642_SNP [dm6]	C	T	7.202e^-5	0.897	UPSTREAM CG31999 INTRON CG31999	transposable element FlyBase
2L	3922940	2L_3922940_DEL [dm3] 2L_3922940_DEL [dm6]	TTTTAGAAATGC...	T	7.357e^-5	0.897	INTRON fred
2L	3922953	2L_3922953_SNP [dm3] 2L_3922953_SNP [dm6]	C	A	7.357e^-5	0.897	INTRON fred
2L	3922979	2L_3922979_SNP [dm3] 2L_3922979_SNP [dm6]	C	T	7.357e^-5	0.897	INTRON fred
2L	7192878	2L_7192878_SNP [dm3] 2L_7192878_SNP [dm6]	T	C	7.393e^-5	0.897	SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9498532	2L_9498532_SNP [dm3] 2L_9498532_SNP [dm6]	C	G	7.452e^-5	0.897	INTRON CG33298	TF binding site BDTNP1_TFBS_twi
3L	951541	3L_951541_SNP [dm3] 3L_951541_SNP [dm6]	C	A	7.459e^-5	0.897	INTRON Glut1
X	4651773	X_4651773_SNP [dm3] X_4757740_SNP [dm6]	T	C	7.462e^-5	0.897	INTERGENIC
2L	6663773	2L_6663773_SNP [dm3] 2L_6663773_SNP [dm6]	G	T	7.613e^-5	0.902	UTR_5_PRIME cup & 1 other UPSTREAM cup & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14312303	2L_14312303_SNP [dm3] 2L_14312303_SNP [dm6]	A	C	7.629e^-5	0.902	INTRON wb
X	13619935	X_13619935_SNP [dm3] X_13725902_SNP [dm6]	C	A	7.689e^-5	0.902	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20993397	3L_20993397_SNP [dm3] 3L_21000297_SNP [dm6]	A	T	7.701e^-5	0.902	SYNONYMOUS_CODING skd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10377754	2L_10377754_SNP [dm3] 2L_10377754_SNP [dm6]	T	A	7.817e^-5	0.91	INTRON dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25245740	3R_25245740_SNP [dm3] 3R_29420018_SNP [dm6]	G	T	7.883e^-5	0.912	INTRON Ptp99A
3R	15277887	3R_15277887_SNP [dm3] 3R_19452165_SNP [dm6]	A	G	7.966e^-5	0.916	INTRON CG31221
2L	1740552	2L_1740552_INS [dm3] 2L_1740552_INS [dm6]	C	CAC	8.122e^-5	0.923	INTRON CG17646
2R	8486985	2R_8486985_SNP [dm3] 2R_12599480_SNP [dm6]	G	A	8.124e^-5	0.923	INTRON Amph
X	8416522	X_8416522_SNP [dm3] X_8522489_SNP [dm6]	A	T	8.209e^-5	0.927	INTRON Nrg
3L	5446215	3L_5446215_SNP [dm3] 3L_5453115_SNP [dm6]	T	A	8.377e^-5	0.94	INTERGENIC
3L	2603720	3L_2603720_SNP [dm3] 3L_2603720_SNP [dm6]	G	T	8.457e^-5	0.943	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11477480	2L_11477480_SNP [dm3] 2L_11477480_SNP [dm6]	G	A	8.507e^-5	0.943	INTERGENIC
X	13512346	X_13512346_SNP [dm3] X_13618313_SNP [dm6]	C	T	8.663e^-5	0.955	SYNONYMOUS_CODING Tango2 DOWNSTREAM CG2691
2L	9175907	2L_9175907_INS [dm3] 2L_9175907_INS [dm6]	A	AATCTAATAT	8.907e^-5	0.976	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	4085254	X_4085254_SNP [dm3] X_4191221_SNP [dm6]	G	A	9.149e^-5	0.979	INTRON Fas2	TF binding site BDTNP1_TFBS_twi
2L	3921198	2L_3921198_SNP [dm3] 2L_3921198_SNP [dm6]	G	A	9.159e^-5	0.979	INTRON fred
X	10969273	X_10969273_SNP [dm3] X_11075240_SNP [dm6]	T	C	9.165e^-5	0.979	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
3R	15604520	3R_15604520_SNP [dm3] 3R_19778798_SNP [dm6]	C	T	9.171e^-5	0.979	SYNONYMOUS_CODING CG11391
3R	23623772	3R_23623772_SNP [dm3] 3R_27798050_SNP [dm6]	A	G	9.256e^-5	0.979	INTRON CG34353
2L	963997	2L_963997_SNP [dm3] 2L_963997_SNP [dm6]	C	A	9.444e^-5	0.979	INTERGENIC
X	3193907	X_3193907_SNP [dm3] X_3299874_SNP [dm6]	C	A	9.456e^-5	0.979	INTRON dnc
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	9.487e^-5	0.979	INTRON Dys
2L	1181612	2L_1181612_SNP [dm3] 2L_1181612_SNP [dm6]	G	A	9.536e^-5	0.979	NON_SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896 DOWNSTREAM CG5126
3R	19379351	3R_19379351_SNP [dm3] 3R_23553629_SNP [dm6]	A	C	9.600e^-5	0.979	DOWNSTREAM CG10164 INTERGENIC
3R	25360567	3R_25360567_SNP [dm3] 3R_29534845_SNP [dm6]	G	T	9.672e^-5	0.979	EXON CR43613	TF binding site mE1_TFBS_chinmo
X	8087807	X_8087807_SNP [dm3] X_8193774_SNP [dm6]	C	A	9.703e^-5	0.979	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11432458	2R_11432458_SNP [dm3] 2R_15544953_SNP [dm6]	T	C	9.761e^-5	0.979	SYNONYMOUS_CODING CG8192 DOWNSTREAM eIF2B-gamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1782683	2L_1782683_SNP [dm3] 2L_1782683_SNP [dm6]	G	T	9.811e^-5	0.979	INTERGENIC	regulatory region REDfly_CRMs
2L	4247839	2L_4247839_SNP [dm3] 2L_4247839_SNP [dm6]	A	G	9.856e^-5	0.979	INTRON CR44059
X	2995406	X_2995406_SNP [dm3] X_3101373_SNP [dm6]	T	G	9.954e^-5	0.979	INTRON kirre
X	9735242	X_9735242_INS [dm3] X_9841209_INS [dm6]	G	GAATTTAG	9.961e^-5	0.979	INTRON CG32698
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	1.005e^-4	0.979	INTRON dpr3
3R	26914309	3R_26914309_SNP [dm3] 3R_31088587_SNP [dm6]	T	A	1.008e^-4	0.979	INTERGENIC
3L	911735	3L_911735_SNP [dm3] 3L_911735_SNP [dm6]	A	T	1.020e^-4	0.979	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
2R	7293754	2R_7293754_SNP [dm3] 2R_11406249_SNP [dm6]	A	T	1.024e^-4	0.979	SYNONYMOUS_CODING CG7759 UPSTREAM tRNA:CR45107
X	8315036	X_8315036_INS [dm3] X_8421003_INS [dm6]	G	GCG	1.026e^-4	0.979	UPSTREAM Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7015740	3L_7015740_SNP [dm3] 3L_7022640_SNP [dm6]	T	C	1.028e^-4	0.979	INTRON Mp
2L	7926834	2L_7926834_SNP [dm3] 2L_7926834_SNP [dm6]	G	A	1.031e^-4	0.979	INTRON Snoo
4	436870	4_436870_SNP [dm3] 4_416244_SNP [dm6]	G	T	1.033e^-4	0.979	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	1182782	2L_1182782_SNP [dm3] 2L_1182782_SNP [dm6]	A	G	1.041e^-4	0.979	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25504847	3R_25504847_SNP [dm3] 3R_29679125_SNP [dm6]	G	A	1.043e^-4	0.979	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
2R	15696311	2R_15696311_SNP [dm3] 2R_19808806_SNP [dm6]	T	A	1.052e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15696327	2R_15696327_SNP [dm3] 2R_19808822_SNP [dm6]	T	A	1.052e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10377596	2L_10377596_SNP [dm3] 2L_10377596_SNP [dm6]	A	T	1.054e^-4	0.979	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4455511	3R_4455511_SNP [dm3] 3R_8629789_SNP [dm6]	C	A	1.055e^-4	0.979	UTR_3_PRIME 5-HT2B
3L	4187113	3L_4187113_SNP [dm3] 3L_4187113_SNP [dm6]	T	G	1.085e^-4	0.981	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1308483	2L_1308483_SNP [dm3] 2L_1308483_SNP [dm6]	A	T	1.086e^-4	0.981	INTERGENIC
2L	9175899	2L_9175899_SNP [dm3] 2L_9175899_SNP [dm6]	G	T	1.091e^-4	0.981	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3487575	2L_3487575_SNP [dm3] 2L_3487575_SNP [dm6]	T	C	1.103e^-4	0.981	INTRON CG15414
2L	7103097	2L_7103097_SNP [dm3] 2L_7103097_SNP [dm6]	T	A	1.108e^-4	0.981	INTRON Pvf3
3L	9130394	3L_9130394_SNP [dm3] 3L_9137294_SNP [dm6]	A	G	1.109e^-4	0.981	UPSTREAM nwk & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	607339	3L_607339_SNP [dm3] 3L_607339_SNP [dm6]	A	G	1.111e^-4	0.981	UPSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15696305	2R_15696305_SNP [dm3] 2R_19808800_SNP [dm6]	A	G	1.118e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10613674	X_10613674_SNP [dm3] X_10719641_SNP [dm6]	G	A	1.126e^-4	0.981	INTRON CG32676
3L	9202024	3L_9202024_SNP [dm3] 3L_9208924_SNP [dm6]	C	T	1.127e^-4	0.981	UPSTREAM Slc45-1 INTERGENIC
2L	8999766	2L_8999766_INS [dm3] 2L_8999766_INS [dm6]	A	AGA	1.129e^-4	0.981	UTR_3_PRIME Try29F DOWNSTREAM Try29F
3L	681212	3L_681212_SNP [dm3] 3L_681212_SNP [dm6]	G	A	1.132e^-4	0.981	SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3487582	2L_3487582_SNP [dm3] 2L_3487582_SNP [dm6]	T	C	1.138e^-4	0.981	INTRON CG15414
3L	3313139	3L_3313139_SNP [dm3] 3L_3313139_SNP [dm6]	C	A	1.147e^-4	0.981	NON_SYNONYMOUS_CODING ZnT63C UTR_3_PRIME ZnT63C	TF binding site mE1_TFBS_cad
3L	15481365	3L_15481365_SNP [dm3] 3L_15488265_SNP [dm6]	C	T	1.150e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14155677	3L_14155677_SNP [dm3] 3L_14162577_SNP [dm6]	T	A	1.154e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3569836	3L_3569836_DEL [dm3] 3L_3569836_DEL [dm6]	TT	T	1.154e^-4	0.981	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20555319	X_20555319_SNP [dm3] X_20684292_SNP [dm6]	T	C	1.160e^-4	0.981	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3R	18164516	3R_18164516_INS [dm3] 3R_22338794_INS [dm6]	A	AC	1.161e^-4	0.981	INTRON CG5388	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	964001	2L_964001_SNP [dm3] 2L_964001_SNP [dm6]	C	T	1.162e^-4	0.981	INTERGENIC
3R	4400901	3R_4400901_SNP [dm3] 3R_8575179_SNP [dm6]	A	C	1.173e^-4	0.985	INTERGENIC
3L	16489032	3L_16489032_SNP [dm3] 3L_16495932_SNP [dm6]	T	G	1.186e^-4	0.985	UPSTREAM CG42514 INTRON CG33158 & 2 others
4	452157	4_452157_SNP [dm3] 4_431531_SNP [dm6]	G	A	1.199e^-4	0.985	EXON CR44024
2R	9775801	2R_9775801_SNP [dm3] 2R_13888296_SNP [dm6]	G	T	1.201e^-4	0.985	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	5623896	2R_5623896_SNP [dm3] 2R_9736391_SNP [dm6]	T	C	1.202e^-4	0.985	INTRON sqa
3L	5835546	3L_5835546_SNP [dm3] 3L_5842446_SNP [dm6]	C	A	1.203e^-4	0.985	SYNONYMOUS_CODING vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3903139	2L_3903139_SNP [dm3] 2L_3903139_SNP [dm6]	T	C	1.207e^-4	0.985	UTR_3_PRIME fred UPSTREAM capu
4	281725	4_281725_SNP [dm3] 4_261099_SNP [dm6]	T	A	1.217e^-4	0.985	INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl
3R	23781813	3R_23781813_SNP [dm3] 3R_27956091_SNP [dm6]	G	C	1.224e^-4	0.985	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1533101	3L_1533101_SNP [dm3] 3L_1533101_SNP [dm6]	G	A	1.229e^-4	0.985	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7096948	2L_7096948_SNP [dm3] 2L_7096948_SNP [dm6]	G	T	1.242e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20673583	X_20673583_SNP [dm3] X_20802556_SNP [dm6]	A	T	1.258e^-4	0.985	INTRON shakB
2L	3396507	2L_3396507_SNP [dm3] 2L_3396507_SNP [dm6]	A	T	1.265e^-4	0.985	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20992627	3L_20992627_SNP [dm3] 3L_20999527_SNP [dm6]	A	G	1.272e^-4	0.985	NON_SYNONYMOUS_CODING skd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3403019	2L_3403019_SNP [dm3] 2L_3403019_SNP [dm6]	T	G	1.279e^-4	0.985	INTERGENIC
X	8761517	X_8761517_SNP [dm3] X_8867484_SNP [dm6]	T	A	1.282e^-4	0.985	INTRON CG12075
X	3451167	X_3451167_SNP [dm3] X_3557134_SNP [dm6]	C	A	1.295e^-4	0.985	UPSTREAM ppk8 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	995204	3L_995204_SNP [dm3] 3L_995204_SNP [dm6]	C	A	1.298e^-4	0.985	NON_SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	18574299	2R_18574299_SNP [dm3] 2R_22686794_SNP [dm6]	A	T	1.298e^-4	0.985	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1316505	2L_1316505_SNP [dm3] 2L_1316505_SNP [dm6]	A	T	1.300e^-4	0.985	INTERGENIC
2L	613718	2L_613718_SNP [dm3] 2L_613718_SNP [dm6]	G	A	1.302e^-4	0.985	INTERGENIC
3L	19287487	3L_19287487_SNP [dm3] 3L_19294387_SNP [dm6]	A	G	1.308e^-4	0.985	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13682234	2R_13682234_SNP [dm3] 2R_17794729_SNP [dm6]	A	T	1.321e^-4	0.985	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3856838	2L_3856838_SNP [dm3] 2L_3856838_SNP [dm6]	G	A	1.323e^-4	0.985	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	3922170	2L_3922170_SNP [dm3] 2L_3922170_SNP [dm6]	C	A	1.328e^-4	0.985	INTRON fred
3R	25469979	3R_25469979_SNP [dm3] 3R_29644257_SNP [dm6]	C	A	1.333e^-4	0.985	INTRON Dop1R2
3L	11657655	3L_11657655_SNP [dm3] 3L_11664555_SNP [dm6]	C	A	1.339e^-4	0.985	INTRON CG32085
X	8416441	X_8416441_SNP [dm3] X_8522408_SNP [dm6]	T	C	1.343e^-4	0.985	INTRON Nrg
3R	27099000	3R_27099000_DEL [dm3] 3R_31273278_DEL [dm6]	AC	A	1.345e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3712427	2L_3712427_SNP [dm3] 2L_3712427_SNP [dm6]	C	T	1.350e^-4	0.985	NON_SYNONYMOUS_CODING CG31955 UPSTREAM cutlet & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	14703807	2R_14703807_SNP [dm3] 2R_18816302_SNP [dm6]	A	T	1.354e^-4	0.985	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
3R	25492170	3R_25492170_SNP [dm3] 3R_29666448_SNP [dm6]	A	C	1.377e^-4	0.985	SYNONYMOUS_CODING ppk21 DOWNSTREAM ppk20	TF binding site mE1_TFBS_HSA
3R	25027815	3R_25027815_SNP [dm3] 3R_29202093_SNP [dm6]	C	A	1.379e^-4	0.985	NON_SYNONYMOUS_CODING Mesh1 DOWNSTREAM CG14508 & 1 other	TF binding site mE1_TFBS_cad
2L	3921833	2L_3921833_SNP [dm3] 2L_3921833_SNP [dm6]	A	G	1.382e^-4	0.985	INTRON fred
X	4916374	X_4916374_SNP [dm3] X_5022341_SNP [dm6]	T	A	1.386e^-4	0.985	INTRON CR44833	regulatory region REDfly_CRMs
3L	7411093	3L_7411093_SNP [dm3] 3L_7417993_SNP [dm6]	T	G	1.398e^-4	0.985	INTERGENIC
3L	16887269	3L_16887269_INS [dm3] 3L_16894169_INS [dm6]	T	TT	1.405e^-4	0.985	INTRON Lmpt
2L	21687820	2L_21687820_DEL [dm3] 2L_21687820_DEL [dm6]	CGTAC	C	1.415e^-4	0.985	INTRON CG31619
3R	25269632	3R_25269632_SNP [dm3] 3R_29443910_SNP [dm6]	T	C	1.418e^-4	0.985	INTRON Ptp99A
3L	2603493	3L_2603493_SNP [dm3] 3L_2603493_SNP [dm6]	G	C	1.420e^-4	0.985	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2604518	3L_2604518_SNP [dm3] 3L_2604518_SNP [dm6]	G	A	1.425e^-4	0.985	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3L	4382190	3L_4382190_SNP [dm3] 3L_4382190_SNP [dm6]	G	C	1.425e^-4	0.985	UPSTREAM CG32240 INTERGENIC
3L	681857	3L_681857_SNP [dm3] 3L_681857_SNP [dm6]	T	C	1.431e^-4	0.985	SPLICE_SITE_REGION CG3386 UTR_5_PRIME CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5843558	2L_5843558_SNP [dm3] 2L_5843558_SNP [dm6]	A	G	1.431e^-4	0.985	INTRON TrissinR
3R	25347047	3R_25347047_SNP [dm3] 3R_29521325_SNP [dm6]	G	T	1.432e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11014811	2L_11014811_SNP [dm3] 2L_11014811_SNP [dm6]	A	T	1.439e^-4	0.985	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
4	261520	4_261520_SNP [dm3] 4_240894_SNP [dm6]	C	T	1.453e^-4	0.985	UTR_3_PRIME CG1674 INTRON CG1674
3R	7731488	3R_7731488_SNP [dm3] 3R_11905766_SNP [dm6]	C	T	1.454e^-4	0.985	INTRON Cad87A
3R	25504850	3R_25504850_SNP [dm3] 3R_29679128_SNP [dm6]	C	G	1.458e^-4	0.985	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
2L	3037368	2L_3037368_SNP [dm3] 2L_3037368_SNP [dm6]	A	T	1.464e^-4	0.985	UTR_5_PRIME CG17259 UPSTREAM CG17260 & 1 other INTRON CG17260	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20393336	3R_20393336_SNP [dm3] 3R_24567614_SNP [dm6]	G	A	1.466e^-4	0.985	INTRON CG13624	TF binding site mE1_TFBS_cnc
2L	987166	2L_987166_SNP [dm3] 2L_987166_SNP [dm6]	T	A	1.469e^-4	0.985	DOWNSTREAM CR44801 INTERGENIC
2L	987170	2L_987170_SNP [dm3] 2L_987170_SNP [dm6]	G	A	1.469e^-4	0.985	DOWNSTREAM CR44801 INTERGENIC
3R	16867719	3R_16867719_SNP [dm3] 3R_21041997_SNP [dm6]	A	G	1.473e^-4	0.985	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1849337	2L_1849337_SNP [dm3] 2L_1849337_SNP [dm6]	G	C	1.482e^-4	0.985	INTRON wry
3R	9138520	3R_9138520_SNP [dm3] 3R_13312798_SNP [dm6]	C	T	1.483e^-4	0.985	DOWNSTREAM CG44142 & 1 other INTERGENIC
2L	4718623	2L_4718623_SNP [dm3] 2L_4718623_SNP [dm6]	A	G	1.494e^-4	0.985	INTRON CG34351
3L	22579008	3L_22579008_SNP [dm3] 3L_22585908_SNP [dm6]	G	T	1.511e^-4	0.985	INTRON CG14459
X	13681525	X_13681525_SNP [dm3] X_13787492_SNP [dm6]	A	T	1.518e^-4	0.985	INTRON inaE	TF binding site mE1_TFBS_kn
2L	9175911	2L_9175911_SNP [dm3] 2L_9175911_SNP [dm6]	T	C	1.523e^-4	0.985	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17006277	3R_17006277_SNP [dm3] 3R_21180555_SNP [dm6]	A	C	1.524e^-4	0.985	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14154838	3L_14154838_SNP [dm3] 3L_14161738_SNP [dm6]	C	T	1.528e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs
X	20673576	X_20673576_SNP [dm3] X_20802549_SNP [dm6]	T	G	1.530e^-4	0.985	INTRON shakB
X	20453149	X_20453149_SNP [dm3] X_20582122_SNP [dm6]	A	G	1.531e^-4	0.985	INTERGENIC
3R	16869791	3R_16869791_SNP [dm3] 3R_21044069_SNP [dm6]	C	G	1.534e^-4	0.985	UPSTREAM CG12278 DOWNSTREAM CG31189 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9739036	2R_9739036_SNP [dm3] 2R_13851531_SNP [dm6]	C	A	1.536e^-4	0.985	SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3923085	2L_3923085_SNP [dm3] 2L_3923085_SNP [dm6]	G	A	1.541e^-4	0.985	INTRON fred
3L	7889737	3L_7889737_SNP [dm3] 3L_7896637_SNP [dm6]	G	T	1.542e^-4	0.985	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3R	26448868	3R_26448868_SNP [dm3] 3R_30623146_SNP [dm6]	G	T	1.545e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9130308	3L_9130308_SNP [dm3] 3L_9137208_SNP [dm6]	T	C	1.561e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9130429	3L_9130429_SNP [dm3] 3L_9137329_SNP [dm6]	T	G	1.565e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3937663	3L_3937663_SNP [dm3] 3L_3937663_SNP [dm6]	A	G	1.569e^-4	0.985	SYNONYMOUS_CODING CG10866 DOWNSTREAM CG12766	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7042262	2L_7042262_SNP [dm3] 2L_7042262_SNP [dm6]	A	C	1.575e^-4	0.985	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16946056	3R_16946056_DEL [dm3] 3R_21120334_DEL [dm6]	GTGTG	G	1.576e^-4	0.985	UTR_3_PRIME slmb
X	18223565	X_18223565_SNP [dm3] X_18329532_SNP [dm6]	G	A	1.577e^-4	0.985	INTRON CG6123
3L	13982644	3L_13982644_SNP [dm3] 3L_13989544_SNP [dm6]	G	T	1.582e^-4	0.985	DOWNSTREAM CG9040 INTRON CG17364
3L	9176151	3L_9176151_SNP [dm3] 3L_9183051_SNP [dm6]	G	A	1.584e^-4	0.985	UPSTREAM Rdl INTERGENIC
2L	1597623	2L_1597623_SNP [dm3] 2L_1597623_SNP [dm6]	A	C	1.600e^-4	0.985	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
3L	9176143	3L_9176143_SNP [dm3] 3L_9183043_SNP [dm6]	A	C	1.601e^-4	0.985	UPSTREAM Rdl INTERGENIC
X	3466042	X_3466042_SNP [dm3] X_3572009_SNP [dm6]	T	C	1.608e^-4	0.985	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8
2R	4547424	2R_4547424_DEL [dm3] 2R_8659919_DEL [dm6]	ACG	A	1.612e^-4	0.985	INTRON ptc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
4	281724	4_281724_SNP [dm3] 4_261098_SNP [dm6]	T	C	1.613e^-4	0.985	INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl
3R	14470081	3R_14470081_SNP [dm3] 3R_18644359_SNP [dm6]	G	C	1.614e^-4	0.985	INTRON qin
2L	4307720	2L_4307720_SNP [dm3] 2L_4307720_SNP [dm6]	G	A	1.632e^-4	0.985	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	10791531	3L_10791531_SNP [dm3] 3L_10798431_SNP [dm6]	A	C	1.636e^-4	0.985	INTERGENIC
3L	6378995	3L_6378995_SNP [dm3] 3L_6385895_SNP [dm6]	C	T	1.642e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	1.648e^-4	0.985	DOWNSTREAM CG42322 INTRON CG42322
3R	16580300	3R_16580300_SNP [dm3] 3R_20754578_SNP [dm6]	C	T	1.656e^-4	0.985	DOWNSTREAM CG42322 INTRON CG42322
2R	14663907	2R_14663907_SNP [dm3] 2R_18776402_SNP [dm6]	A	G	1.672e^-4	0.985	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8034996	2L_8034996_SNP [dm3] 2L_8034996_SNP [dm6]	T	G	1.678e^-4	0.985	INTRON CG7367 & 1 other
2R	7421056	2R_7421056_SNP [dm3] 2R_11533551_SNP [dm6]	T	C	1.684e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	15291282	2L_15291282_SNP [dm3] 2L_15291282_SNP [dm6]	A	C	1.693e^-4	0.985	DOWNSTREAM CG15260 INTERGENIC
4	295164	4_295164_SNP [dm3] 4_274538_SNP [dm6]	T	A	1.695e^-4	0.985	INTRON NfI
2R	20030344	2R_20030344_SNP [dm3] 2R_24142821_SNP [dm6]	T	A	1.705e^-4	0.985	INTRON Dat
X	14012303	X_14012303_SNP [dm3] X_14118270_SNP [dm6]	G	A	1.714e^-4	0.985	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1015286	2L_1015286_SNP [dm3] 2L_1015286_SNP [dm6]	G	A	1.714e^-4	0.985	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9007982	2L_9007982_SNP [dm3] 2L_9007982_SNP [dm6]	G	A	1.724e^-4	0.985	INTERGENIC
3R	15771872	3R_15771872_SNP [dm3] 3R_19946150_SNP [dm6]	T	G	1.728e^-4	0.985	INTRON Hs6st
3R	4690105	3R_4690105_SNP [dm3] 3R_8864383_SNP [dm6]	A	C	1.734e^-4	0.985	UPSTREAM pyd INTRON pyd
X	5872293	X_5872293_SNP [dm3] X_5978260_SNP [dm6]	C	T	1.741e^-4	0.985	INTRON Grip
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	1.741e^-4	0.985	INTRON CG42747
3R	17006271	3R_17006271_SNP [dm3] 3R_21180549_SNP [dm6]	A	T	1.751e^-4	0.985	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13183909	3L_13183909_SNP [dm3] 3L_13190809_SNP [dm6]	T	G	1.753e^-4	0.985	INTERGENIC
2L	1627022	2L_1627022_INS [dm3] 2L_1627022_INS [dm6]	T	TTT	1.754e^-4	0.985	INTERGENIC
2L	3914079	2L_3914079_SNP [dm3] 2L_3914079_SNP [dm6]	G	A	1.760e^-4	0.985	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl
2L	17478384	2L_17478384_SNP [dm3] 2L_17478384_SNP [dm6]	A	T	1.761e^-4	0.985	UPSTREAM Aac11 DOWNSTREAM fws INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25245921	3R_25245921_SNP [dm3] 3R_29420199_SNP [dm6]	T	G	1.779e^-4	0.985	INTRON Ptp99A
X	20555307	X_20555307_SNP [dm3] X_20684280_SNP [dm6]	T	A	1.780e^-4	0.985	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	3856590	2L_3856590_SNP [dm3] 2L_3856590_SNP [dm6]	C	T	1.780e^-4	0.985	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16864734	3R_16864734_SNP [dm3] 3R_21039012_SNP [dm6]	T	G	1.791e^-4	0.985	SYNONYMOUS_CODING Dhc93AB
2L	1947380	2L_1947380_SNP [dm3] 2L_1947380_SNP [dm6]	C	G	1.793e^-4	0.985	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5445409	X_5445409_SNP [dm3] X_5551376_SNP [dm6]	C	T	1.808e^-4	0.985	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	12124938	3L_12124938_SNP [dm3] 3L_12131838_SNP [dm6]	G	A	1.809e^-4	0.985	UTR_3_PRIME Lsp2 UPSTREAM CG11534 DOWNSTREAM Lsp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12243443	2L_12243443_SNP [dm3] 2L_12243443_SNP [dm6]	C	T	1.810e^-4	0.985	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9585281	2L_9585281_SNP [dm3] 2L_9585281_SNP [dm6]	T	G	1.820e^-4	0.985	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	5751643	2L_5751643_SNP [dm3] 2L_5751643_SNP [dm6]	A	T	1.823e^-4	0.985	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4201652	2L_4201652_SNP [dm3] 2L_4201652_SNP [dm6]	G	A	1.855e^-4	0.985	SYNONYMOUS_CODING ft
3R	16864617	3R_16864617_SNP [dm3] 3R_21038895_SNP [dm6]	A	G	1.864e^-4	0.985	SYNONYMOUS_CODING Dhc93AB
2R	11772530	2R_11772530_SNP [dm3] 2R_15885025_SNP [dm6]	C	G	1.871e^-4	0.985	INTRON sli
3L	16488997	3L_16488997_SNP [dm3] 3L_16495897_SNP [dm6]	A	G	1.872e^-4	0.985	UPSTREAM CG42514 INTRON CG33158 & 2 others
3L	10363738	3L_10363738_SNP [dm3] 3L_10370638_SNP [dm6]	A	T	1.872e^-4	0.985	INTERGENIC
3L	3935695	3L_3935695_SNP [dm3] 3L_3935695_SNP [dm6]	G	C	1.876e^-4	0.985	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	1.878e^-4	0.985	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3R	16873087	3R_16873087_INS [dm3] 3R_21047365_INS [dm6]	AAACA	TGTTCTGTTTGG...	1.883e^-4	0.985	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
2L	729323	2L_729323_SNP [dm3] 2L_729323_SNP [dm6]	C	T	1.890e^-4	0.985	SYNONYMOUS_CODING Hsp60B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15261768	3R_15261768_SNP [dm3] 3R_19436046_SNP [dm6]	T	C	1.903e^-4	0.985	INTRON CG31221
X	6618940	X_6618940_SNP [dm3] X_6724907_SNP [dm6]	A	G	1.912e^-4	0.985	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	15278153	3R_15278153_SNP [dm3] 3R_19452431_SNP [dm6]	G	A	1.918e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	20912966	3R_20912966_SNP [dm3] 3R_25087244_SNP [dm6]	C	T	1.919e^-4	0.985	INTERGENIC
2L	3914076	2L_3914076_SNP [dm3] 2L_3914076_SNP [dm6]	T	C	1.920e^-4	0.985	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl
3L	8721216	3L_8721216_SNP [dm3] 3L_8728116_SNP [dm6]	G	A	1.927e^-4	0.985	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3L	8721217	3L_8721217_SNP [dm3] 3L_8728117_SNP [dm6]	A	G	1.927e^-4	0.985	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	25504219	3R_25504219_SNP [dm3] 3R_29678497_SNP [dm6]	G	A	1.937e^-4	0.985	NON_SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16560340	3R_16560340_SNP [dm3] 3R_20734618_SNP [dm6]	C	A	1.944e^-4	0.985	UPSTREAM CR42786 INTERGENIC
3R	6838380	3R_6838380_SNP [dm3] 3R_11012658_SNP [dm6]	A	T	1.961e^-4	0.985	INTRON CG34114
3R	25502965	3R_25502965_SNP [dm3] 3R_29677243_SNP [dm6]	A	C	1.970e^-4	0.985	SYNONYMOUS_CODING Cap-D2
3R	3895547	3R_3895547_SNP [dm3] 3R_8069825_SNP [dm6]	G	A	1.971e^-4	0.985	INTRON mAChR-B
3R	15278004	3R_15278004_SNP [dm3] 3R_19452282_SNP [dm6]	G	T	1.972e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	12141596	2L_12141596_SNP [dm3] 2L_12141596_SNP [dm6]	C	T	1.979e^-4	0.985	INTERGENIC
4	195457	4_195457_DEL [dm3] 4_174831_DEL [dm6]	GGTA	G	1.987e^-4	0.985	UPSTREAM CR45198
2R	15776358	2R_15776358_SNP [dm3] 2R_19888853_SNP [dm6]	G	A	1.989e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12687300	2R_12687300_SNP [dm3] 2R_16799795_SNP [dm6]	G	A	2.003e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12672454	3L_12672454_SNP [dm3] 3L_12679354_SNP [dm6]	T	G	2.011e^-4	0.985	INTERGENIC
X	3465719	X_3465719_SNP [dm3] X_3571686_SNP [dm6]	C	T	2.012e^-4	0.985	SYNONYMOUS_CODING ppk8 UTR_3_PRIME CG2875 UPSTREAM CG32791 DOWNSTREAM CG2875	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8088120	X_8088120_INS [dm3] X_8194087_INS [dm6]	T	TTTT	2.017e^-4	0.985	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7421083	2R_7421083_SNP [dm3] 2R_11533578_SNP [dm6]	A	T	2.024e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	1197440	2L_1197440_SNP [dm3] 2L_1197440_SNP [dm6]	C	T	2.030e^-4	0.985	DOWNSTREAM CG5001 INTERGENIC
3L	6118282	3L_6118282_SNP [dm3] 3L_6125182_SNP [dm6]	A	G	2.039e^-4	0.985	SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	10613681	X_10613681_SNP [dm3] X_10719648_SNP [dm6]	C	G	2.044e^-4	0.985	INTRON CG32676
2L	8776894	2L_8776894_SNP [dm3] 2L_8776894_SNP [dm6]	A	C	2.049e^-4	0.985	UPSTREAM CG9466 DOWNSTREAM CG9468 INTERGENIC	transposable element FlyBase
3L	733608	3L_733608_SNP [dm3] 3L_733608_SNP [dm6]	T	C	2.049e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	13527193	2R_13527193_SNP [dm3] 2R_17639688_SNP [dm6]	T	C	2.052e^-4	0.985	UPSTREAM CG10936 INTERGENIC
X	9292062	X_9292062_SNP [dm3] X_9398029_SNP [dm6]	A	T	2.056e^-4	0.985	INTRON mgl
2R	10310673	2R_10310673_SNP [dm3] 2R_14423168_SNP [dm6]	T	C	2.068e^-4	0.985	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7815361	2L_7815361_SNP [dm3] 2L_7815361_SNP [dm6]	T	C	2.084e^-4	0.985	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8761491	X_8761491_SNP [dm3] X_8867458_SNP [dm6]	C	T	2.086e^-4	0.985	INTRON CG12075
3L	8721053	3L_8721053_SNP [dm3] 3L_8727953_SNP [dm6]	A	T	2.088e^-4	0.985	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	6435193	3R_6435193_SNP [dm3] 3R_10609471_SNP [dm6]	G	A	2.101e^-4	0.985	INTRON hth
3L	733544	3L_733544_SNP [dm3] 3L_733544_SNP [dm6]	G	A	2.109e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	16489046	3L_16489046_SNP [dm3] 3L_16495946_SNP [dm6]	T	A	2.110e^-4	0.985	UPSTREAM CG42514 INTRON CG33158 & 2 others
2L	9585192	2L_9585192_SNP [dm3] 2L_9585192_SNP [dm6]	A	G	2.122e^-4	0.985	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	19157388	3R_19157388_SNP [dm3] 3R_23331666_SNP [dm6]	A	C	2.132e^-4	0.985	INTRON pnt
2L	13913137	2L_13913137_SNP [dm3] 2L_13913137_SNP [dm6]	A	T	2.145e^-4	0.985	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3L	3937666	3L_3937666_SNP [dm3] 3L_3937666_SNP [dm6]	G	A	2.148e^-4	0.985	SYNONYMOUS_CODING CG10866 DOWNSTREAM CG12766	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11014710	2L_11014710_SNP [dm3] 2L_11014710_SNP [dm6]	T	C	2.149e^-4	0.985	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3L	20898485	3L_20898485_SNP [dm3] 3L_20905385_SNP [dm6]	A	C	2.157e^-4	0.985	UPSTREAM CG11458 INTERGENIC
2R	13690345	2R_13690345_SNP [dm3] 2R_17802840_SNP [dm6]	C	A	2.158e^-4	0.985	UTR_5_PRIME grh UPSTREAM grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8088138	X_8088138_SNP [dm3] X_8194105_SNP [dm6]	A	T	2.173e^-4	0.985	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15785599	3R_15785599_SNP [dm3] 3R_19959877_SNP [dm6]	G	A	2.174e^-4	0.985	INTRON Hs6st
X	20555326	X_20555326_SNP [dm3] X_20684299_SNP [dm6]	G	A	2.180e^-4	0.985	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	12942277	3L_12942277_SNP [dm3] 3L_12949177_SNP [dm6]	A	T	2.182e^-4	0.985	INTERGENIC
X	4785687	X_4785687_SNP [dm3] X_4891654_SNP [dm6]	G	A	2.187e^-4	0.985	INTRON CG42594
3L	3824698	3L_3824698_SNP [dm3] 3L_3824698_SNP [dm6]	T	A	2.189e^-4	0.985	UPSTREAM Rdh INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15278065	3R_15278065_SNP [dm3] 3R_19452343_SNP [dm6]	A	G	2.190e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	25363857	3R_25363857_SNP [dm3] 3R_29538135_SNP [dm6]	G	T	2.195e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8087755	X_8087755_SNP [dm3] X_8193722_SNP [dm6]	G	A	2.196e^-4	0.985	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8272182	3L_8272182_SNP [dm3] 3L_8279082_SNP [dm6]	G	C	2.197e^-4	0.985	SYNONYMOUS_CODING Dscam4
3L	12162331	3L_12162331_SNP [dm3] 3L_12169231_SNP [dm6]	G	A	2.203e^-4	0.985	INTRON Rh7
2L	16551240	2L_16551240_SNP [dm3] 2L_16551240_SNP [dm6]	T	C	2.205e^-4	0.985	INTRON CG42389
2R	3552794	2R_3552794_SNP [dm3] 2R_7665289_SNP [dm6]	T	A	2.208e^-4	0.985	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	22423162	3L_22423162_SNP [dm3] 3L_22430062_SNP [dm6]	G	A	2.217e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1597630	2L_1597630_SNP [dm3] 2L_1597630_SNP [dm6]	A	T	2.222e^-4	0.985	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
3R	15277932	3R_15277932_SNP [dm3] 3R_19452210_SNP [dm6]	A	T	2.225e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	2468529	3L_2468529_SNP [dm3] 3L_2468529_SNP [dm6]	G	C	2.227e^-4	0.985	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
X	8761509	X_8761509_SNP [dm3] X_8867476_SNP [dm6]	T	A	2.227e^-4	0.985	INTRON CG12075
3L	13982386	3L_13982386_SNP [dm3] 3L_13989286_SNP [dm6]	A	C	2.232e^-4	0.985	DOWNSTREAM CG9040 INTRON CG17364
4	424813	4_424813_SNP [dm3] 4_404187_SNP [dm6]	C	A	2.247e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7324072	3L_7324072_SNP [dm3] 3L_7330972_SNP [dm6]	A	C	2.252e^-4	0.985	SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307	TF binding site mE1_TFBS_cad
3L	5277180	3L_5277180_DEL [dm3] 3L_5284080_DEL [dm6]	AA	T	2.258e^-4	0.985	INTERGENIC
3L	10363732	3L_10363732_SNP [dm3] 3L_10370632_SNP [dm6]	T	C	2.260e^-4	0.985	INTERGENIC
2L	10836830	2L_10836830_SNP [dm3] 2L_10836830_SNP [dm6]	A	G	2.286e^-4	0.985	DOWNSTREAM CG6700 INTRON Nos
3L	8721219	3L_8721219_SNP [dm3] 3L_8728119_SNP [dm6]	A	C	2.287e^-4	0.985	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	13058575	3R_13058575_SNP [dm3] 3R_17232853_SNP [dm6]	A	G	2.295e^-4	0.985	SYNONYMOUS_CODING beat-IIb
3L	9130266	3L_9130266_SNP [dm3] 3L_9137166_SNP [dm6]	A	C	2.299e^-4	0.985	UTR_5_PRIME Use1 UPSTREAM nwk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2074315	3L_2074315_SNP [dm3] 3L_2074315_SNP [dm6]	A	T	2.301e^-4	0.985	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	613728	2L_613728_SNP [dm3] 2L_613728_SNP [dm6]	G	A	2.302e^-4	0.985	INTERGENIC
2L	3922971	2L_3922971_SNP [dm3] 2L_3922971_SNP [dm6]	T	A	2.307e^-4	0.985	INTRON fred
X	7001469	X_7001469_SNP [dm3] X_7107436_SNP [dm6]	T	A	2.320e^-4	0.985	NON_SYNONYMOUS_CODING fz4
3R	9301075	3R_9301075_SNP [dm3] 3R_13475353_SNP [dm6]	C	A	2.325e^-4	0.985	INTERGENIC
3L	3938252	3L_3938252_DEL [dm3] 3L_3938252_DEL [dm6]	AA	A	2.332e^-4	0.985	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
3L	10633450	3L_10633450_SNP [dm3] 3L_10640350_SNP [dm6]	T	C	2.335e^-4	0.985	UTR_3_PRIME CG32066 DOWNSTREAM CG32066 & 2 others
3R	13892195	3R_13892195_SNP [dm3] 3R_18066473_SNP [dm6]	T	A	2.340e^-4	0.985	INTERGENIC
3R	18258618	3R_18258618_DEL [dm3] 3R_22432896_DEL [dm6]	CC	C	2.342e^-4	0.985	INTRON CG13847	TF binding site BDTNP1_TFBS_twi
X	2995862	X_2995862_INS [dm3] X_3101829_INS [dm6]	T	TT	2.349e^-4	0.985	INTRON kirre
2R	12861667	2R_12861667_SNP [dm3] 2R_16974162_SNP [dm6]	A	G	2.359e^-4	0.985	INTRON Cbp53E
3L	19182375	3L_19182375_SNP [dm3] 3L_19189275_SNP [dm6]	T	A	2.363e^-4	0.985	INTRON fz2
2L	10836828	2L_10836828_SNP [dm3] 2L_10836828_SNP [dm6]	T	A	2.365e^-4	0.985	DOWNSTREAM CG6700 INTRON Nos
2L	3396532	2L_3396532_SNP [dm3] 2L_3396532_SNP [dm6]	G	A	2.366e^-4	0.985	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9333525	3R_9333525_SNP [dm3] 3R_13507803_SNP [dm6]	G	A	2.368e^-4	0.985	INTERGENIC
X	5445429	X_5445429_SNP [dm3] X_5551396_SNP [dm6]	C	T	2.370e^-4	0.985	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	4807392	X_4807392_SNP [dm3] X_4913359_SNP [dm6]	G	A	2.379e^-4	0.985	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3938250	3L_3938250_SNP [dm3] 3L_3938250_SNP [dm6]	A	C	2.387e^-4	0.985	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
3L	10791534	3L_10791534_SNP [dm3] 3L_10798434_SNP [dm6]	G	A	2.389e^-4	0.985	INTERGENIC
3R	19144420	3R_19144420_SNP [dm3] 3R_23318698_SNP [dm6]	C	T	2.393e^-4	0.985	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8034959	2L_8034959_SNP [dm3] 2L_8034959_SNP [dm6]	T	C	2.398e^-4	0.985	INTRON CG7367 & 1 other
3L	2073492	3L_2073492_SNP [dm3] 3L_2073492_SNP [dm6]	T	C	2.402e^-4	0.985	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9130487	3L_9130487_SNP [dm3] 3L_9137387_SNP [dm6]	T	C	2.402e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2604517	3L_2604517_SNP [dm3] 3L_2604517_SNP [dm6]	A	T	2.409e^-4	0.985	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3R	16871775	3R_16871775_SNP [dm3] 3R_21046053_SNP [dm6]	T	C	2.420e^-4	0.985	NON_SYNONYMOUS_CODING CG31207 UPSTREAM CG31189
3R	17006280	3R_17006280_SNP [dm3] 3R_21180558_SNP [dm6]	A	T	2.425e^-4	0.985	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3588136	2L_3588136_SNP [dm3] 2L_3588136_SNP [dm6]	G	T	2.426e^-4	0.985	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	13647016	3L_13647016_SNP [dm3] 3L_13653916_SNP [dm6]	T	C	2.434e^-4	0.985	INTRON bru-3
3R	19157354	3R_19157354_SNP [dm3] 3R_23331632_SNP [dm6]	C	T	2.440e^-4	0.985	INTRON pnt
X	6209761	X_6209761_SNP [dm3] X_6315728_SNP [dm6]	A	G	2.443e^-4	0.985	INTRON CG15894
2L	1430193	2L_1430193_SNP [dm3] 2L_1430193_SNP [dm6]	A	G	2.457e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13005944	X_13005944_DEL [dm3] X_13111911_DEL [dm6]	CCTGTTC	C	2.459e^-4	0.985	UTR_5_PRIME CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9691060	X_9691060_SNP [dm3] X_9797027_SNP [dm6]	A	G	2.459e^-4	0.985	INTRON CG32698
2R	9376700	2R_9376700_SNP [dm3] 2R_13489195_SNP [dm6]	T	C	2.465e^-4	0.985	INTRON bbc	TF binding site BDTNP1_TFBS_twi
3R	17209493	3R_17209493_SNP [dm3] 3R_21383771_SNP [dm6]	G	A	2.465e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs
3L	21032521	3L_21032521_SNP [dm3] 3L_21039421_SNP [dm6]	G	T	2.466e^-4	0.985	INTRON siz
3R	15785639	3R_15785639_SNP [dm3] 3R_19959917_SNP [dm6]	C	A	2.471e^-4	0.985	INTRON Hs6st
2L	6678989	2L_6678989_SNP [dm3] 2L_6678989_SNP [dm6]	A	G	2.471e^-4	0.985	UTR_3_PRIME Nhe3 DOWNSTREAM Nhe3 INTRON Nhe3	TF binding site mE1_TFBS_zfh1
2L	4207185	2L_4207185_SNP [dm3] 2L_4207185_SNP [dm6]	T	C	2.483e^-4	0.985	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19224910	X_19224910_SNP [dm3] X_19330877_SNP [dm6]	T	G	2.485e^-4	0.985	INTRON nAChRalpha7
2L	9642906	2L_9642906_SNP [dm3] 2L_9642906_SNP [dm6]	A	C	2.486e^-4	0.985	INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3R	16871685	3R_16871685_SNP [dm3] 3R_21045963_SNP [dm6]	T	A	2.495e^-4	0.985	UPSTREAM CG31189 DOWNSTREAM CG31207 INTERGENIC
2L	8777599	2L_8777599_SNP [dm3] 2L_8777599_SNP [dm6]	A	G	2.497e^-4	0.985	DOWNSTREAM CG9468 INTERGENIC
3L	9130533	3L_9130533_SNP [dm3] 3L_9137433_SNP [dm6]	T	A	2.506e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3821818	3L_3821818_SNP [dm3] 3L_3821818_SNP [dm6]	G	A	2.518e^-4	0.985	INTRON enc
3L	2615904	3L_2615904_SNP [dm3] 3L_2615904_SNP [dm6]	T	C	2.521e^-4	0.985	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	9236341	2L_9236341_SNP [dm3] 2L_9236341_SNP [dm6]	C	T	2.522e^-4	0.985	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	2566006	3L_2566006_SNP [dm3] 3L_2566006_SNP [dm6]	A	G	2.522e^-4	0.985	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2933166	2L_2933166_SNP [dm3] 2L_2933166_SNP [dm6]	C	G	2.524e^-4	0.985	INTRON lilli
3R	19157315	3R_19157315_INS [dm3] 3R_23331593_INS [dm6]	A	AA	2.525e^-4	0.985	INTRON pnt
2L	1782704	2L_1782704_SNP [dm3] 2L_1782704_SNP [dm6]	G	A	2.534e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs
X	6618975	X_6618975_SNP [dm3] X_6724942_SNP [dm6]	A	G	2.540e^-4	0.985	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	6381450	3L_6381450_SNP [dm3] 3L_6388350_SNP [dm6]	T	G	2.541e^-4	0.985	INTERGENIC
X	4231109	X_4231109_SNP [dm3] X_4337076_SNP [dm6]	C	G	2.543e^-4	0.985	INTRON norpA
2L	8622199	2L_8622199_SNP [dm3] 2L_8622199_SNP [dm6]	C	T	2.549e^-4	0.985	INTRON Sema-1a
3R	25491244	3R_25491244_SNP [dm3] 3R_29665522_SNP [dm6]	T	C	2.551e^-4	0.985	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
2L	4718056	2L_4718056_SNP [dm3] 2L_4718056_SNP [dm6]	T	C	2.553e^-4	0.985	INTRON CG34351
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	2.554e^-4	0.985	INTERGENIC
X	6209763	X_6209763_SNP [dm3] X_6315730_SNP [dm6]	T	C	2.566e^-4	0.985	INTRON CG15894
2L	8777614	2L_8777614_SNP [dm3] 2L_8777614_SNP [dm6]	C	A	2.570e^-4	0.985	DOWNSTREAM CG9468 INTERGENIC
X	8761498	X_8761498_SNP [dm3] X_8867465_SNP [dm6]	A	C	2.571e^-4	0.985	INTRON CG12075
2L	15738086	2L_15738086_SNP [dm3] 2L_15738086_SNP [dm6]	C	A	2.575e^-4	0.985	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4928832	2L_4928832_SNP [dm3] 2L_4928832_SNP [dm6]	C	T	2.577e^-4	0.985	UPSTREAM hoe1 INTRON hoe1
2L	8055771	2L_8055771_SNP [dm3] 2L_8055771_SNP [dm6]	T	G	2.591e^-4	0.985	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9176139	3L_9176139_SNP [dm3] 3L_9183039_SNP [dm6]	C	A	2.598e^-4	0.985	UPSTREAM Rdl INTERGENIC
2L	14285892	2L_14285892_SNP [dm3] 2L_14285892_SNP [dm6]	T	A	2.603e^-4	0.985	INTRON wb
2L	5844403	2L_5844403_SNP [dm3] 2L_5844403_SNP [dm6]	C	A	2.606e^-4	0.985	INTRON TrissinR
2L	3119493	2L_3119493_SNP [dm3] 2L_3119493_SNP [dm6]	A	C	2.611e^-4	0.985	INTRON toc
3L	1832557	3L_1832557_SNP [dm3] 3L_1832557_SNP [dm6]	T	G	2.614e^-4	0.985	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
3L	952444	3L_952444_SNP [dm3] 3L_952444_SNP [dm6]	T	A	2.619e^-4	0.985	INTRON Glut1
3R	23872749	3R_23872749_SNP [dm3] 3R_28047027_SNP [dm6]	G	A	2.619e^-4	0.985	UPSTREAM CG34362 INTRON CG34362
3R	19148393	3R_19148393_SNP [dm3] 3R_23322671_SNP [dm6]	A	C	2.628e^-4	0.985	INTRON pnt
X	6209850	X_6209850_SNP [dm3] X_6315817_SNP [dm6]	C	A	2.634e^-4	0.985	INTRON CG15894
3R	14469820	3R_14469820_SNP [dm3] 3R_18644098_SNP [dm6]	T	C	2.638e^-4	0.985	INTRON qin
2R	8694656	2R_8694656_INS [dm3] 2R_12807151_INS [dm6]	A	TG	2.643e^-4	0.985	UTR_3_PRIME CG17580
X	5245617	X_5245617_SNP [dm3] X_5351584_SNP [dm6]	T	G	2.647e^-4	0.985	INTRON SK
2R	17909628	2R_17909628_SNP [dm3] 2R_22022123_SNP [dm6]	A	G	2.649e^-4	0.985	INTRON CG34370
3R	15278006	3R_15278006_SNP [dm3] 3R_19452284_SNP [dm6]	C	T	2.655e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	16887286	3L_16887286_SNP [dm3] 3L_16894186_SNP [dm6]	C	T	2.665e^-4	0.985	INTRON Lmpt
2R	14366119	2R_14366119_SNP [dm3] 2R_18478614_SNP [dm6]	C	T	2.672e^-4	0.985	INTRON CG30116
3L	3936530	3L_3936530_SNP [dm3] 3L_3936530_SNP [dm6]	A	G	2.672e^-4	0.985	UTR_3_PRIME CG10866 UPSTREAM Eip63F-1 DOWNSTREAM CG10866 & 1 other
2L	5053704	2L_5053704_SNP [dm3] 2L_5053704_SNP [dm6]	G	A	2.672e^-4	0.985	NON_SYNONYMOUS_CODING CG14040 UPSTREAM eIF-3p40 DOWNSTREAM CG14036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5843698	2L_5843698_SNP [dm3] 2L_5843698_SNP [dm6]	G	T	2.708e^-4	0.985	INTRON TrissinR
3L	7875926	3L_7875926_SNP [dm3] 3L_7882826_SNP [dm6]	G	C	2.709e^-4	0.985	INTRON CG32365
2R	10889139	2R_10889139_SNP [dm3] 2R_15001634_SNP [dm6]	A	C	2.710e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	11014771	2L_11014771_SNP [dm3] 2L_11014771_SNP [dm6]	C	A	2.716e^-4	0.985	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3R	23781753	3R_23781753_SNP [dm3] 3R_27956031_SNP [dm6]	T	C	2.718e^-4	0.985	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20713868	3R_20713868_SNP [dm3] 3R_24888146_SNP [dm6]	T	G	2.722e^-4	0.985	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15278032	3R_15278032_SNP [dm3] 3R_19452310_SNP [dm6]	T	A	2.739e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	20651692	3R_20651692_SNP [dm3] 3R_24825970_SNP [dm6]	G	T	2.741e^-4	0.985	UPSTREAM niki DOWNSTREAM RabX4 INTRON CG43166
X	9903587	X_9903587_DEL [dm3] X_10009554_DEL [dm6]	TT	T	2.751e^-4	0.985	UPSTREAM CG2990 INTRON CG33557	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9737288	2R_9737288_SNP [dm3] 2R_13849783_SNP [dm6]	T	C	2.753e^-4	0.985	UTR_3_PRIME CG30484 UPSTREAM CG30485
3R	20424686	3R_20424686_SNP [dm3] 3R_24598964_SNP [dm6]	T	G	2.764e^-4	0.985	INTRON mld
X	12401193	X_12401193_SNP [dm3] X_12507160_SNP [dm6]	A	G	2.765e^-4	0.985	INTRON CG2556
3R	13682046	3R_13682046_SNP [dm3] 3R_17856324_SNP [dm6]	C	G	2.768e^-4	0.985	INTRON tinc
X	2680534	X_2680534_SNP [dm3] X_2786501_SNP [dm6]	C	T	2.770e^-4	0.985	INTRON kirre & 1 other
2L	11694723	2L_11694723_SNP [dm3] 2L_11694723_SNP [dm6]	A	T	2.805e^-4	0.985	UPSTREAM CG4988 INTERGENIC
3R	13682028	3R_13682028_SNP [dm3] 3R_17856306_SNP [dm6]	T	G	2.805e^-4	0.985	INTRON tinc
2R	10889145	2R_10889145_SNP [dm3] 2R_15001640_SNP [dm6]	T	C	2.819e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	6177754	2R_6177754_SNP [dm3] 2R_10290249_SNP [dm6]	A	C	2.826e^-4	0.985	UPSTREAM CAP INTRON CAP
X	4859959	X_4859959_SNP [dm3] X_4965926_SNP [dm6]	G	T	2.828e^-4	0.985	INTRON CR44833	regulatory region REDfly_CRMs
3L	2707754	3L_2707754_SNP [dm3] 3L_2707754_SNP [dm6]	T	C	2.832e^-4	0.985	INTRON Fife
3L	18953224	3L_18953224_SNP [dm3] 3L_18960124_SNP [dm6]	A	G	2.836e^-4	0.985	INTERGENIC
2L	19410858	2L_19410858_SNP [dm3] 2L_19410858_SNP [dm6]	G	A	2.850e^-4	0.985	SYNONYMOUS_CODING Pax INTRON Pax
3L	5669327	3L_5669327_SNP [dm3] 3L_5676227_SNP [dm6]	A	G	2.860e^-4	0.985	INTRON sif
2L	10296125	2L_10296125_SNP [dm3] 2L_10296125_SNP [dm6]	G	A	2.868e^-4	0.985	UPSTREAM Hand INTRON CYLD	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3R	26338750	3R_26338750_SNP [dm3] 3R_30513028_SNP [dm6]	A	G	2.869e^-4	0.985	SYNONYMOUS_CODING CG31524 UPSTREAM PH4alphaNE2	TF binding site mE1_TFBS_HSA
3R	26338762	3R_26338762_SNP [dm3] 3R_30513040_SNP [dm6]	A	G	2.869e^-4	0.985	SYNONYMOUS_CODING CG31524 UPSTREAM PH4alphaNE2	TF binding site mE1_TFBS_HSA
2R	9089426	2R_9089426_SNP [dm3] 2R_13201921_SNP [dm6]	T	C	2.880e^-4	0.985	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7786361	3L_7786361_SNP [dm3] 3L_7793261_SNP [dm6]	C	T	2.881e^-4	0.985	INTRON CG32369
3R	6546067	3R_6546067_SNP [dm3] 3R_10720345_SNP [dm6]	A	C	2.884e^-4	0.985	INTERGENIC
2R	2983388	2R_2983388_SNP [dm3] 2R_7095883_SNP [dm6]	G	T	2.885e^-4	0.985	INTRON esn
2L	1185751	2L_1185751_SNP [dm3] 2L_1185751_SNP [dm6]	A	G	2.890e^-4	0.985	UPSTREAM CG5001 DOWNSTREAM Tgt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	7042260	2L_7042260_SNP [dm3] 2L_7042260_SNP [dm6]	C	T	2.899e^-4	0.985	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10313508	2R_10313508_SNP [dm3] 2R_14426003_SNP [dm6]	G	A	2.907e^-4	0.985	INTERGENIC
2L	3292772	2L_3292772_SNP [dm3] 2L_3292772_SNP [dm6]	C	T	2.914e^-4	0.985	SYNONYMOUS_CODING CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2602458	3L_2602458_SNP [dm3] 3L_2602458_SNP [dm6]	C	G	2.918e^-4	0.985	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2074381	3L_2074381_SNP [dm3] 3L_2074381_SNP [dm6]	C	T	2.927e^-4	0.985	SYNONYMOUS_CODING sls INTRON sls
2L	19806819	2L_19806819_SNP [dm3] 2L_19806819_SNP [dm6]	G	C	2.927e^-4	0.985	INTRON sick
3R	20387341	3R_20387341_SNP [dm3] 3R_24561619_SNP [dm6]	C	T	2.930e^-4	0.985	SYNONYMOUS_CODING CG13624	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12910221	X_12910221_SNP [dm3] X_13016188_SNP [dm6]	G	A	2.931e^-4	0.985	INTRON rad
3L	3937822	3L_3937822_SNP [dm3] 3L_3937822_SNP [dm6]	C	G	2.935e^-4	0.985	UTR_5_PRIME CG10866 DOWNSTREAM CG12766	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25270095	3R_25270095_DEL [dm3] 3R_29444373_DEL [dm6]	CCC	C	2.940e^-4	0.985	INTRON Ptp99A
3R	25504928	3R_25504928_SNP [dm3] 3R_29679206_SNP [dm6]	T	G	2.941e^-4	0.985	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5625952	2R_5625952_SNP [dm3] 2R_9738447_SNP [dm6]	G	T	2.956e^-4	0.985	INTRON sqa
2R	11241912	2R_11241912_SNP [dm3] 2R_15354407_SNP [dm6]	C	T	2.960e^-4	0.985	INTRON unc-5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	13549598	X_13549598_SNP [dm3] X_13655565_SNP [dm6]	C	A	2.971e^-4	0.985	SYNONYMOUS_CODING NFAT
2R	14222128	2R_14222128_SNP [dm3] 2R_18334623_SNP [dm6]	T	A	2.990e^-4	0.985	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
4	321140	4_321140_INS [dm3] 4_300514_INS [dm6]	T	TT	3.003e^-4	0.985	INTRON Syt7
2R	15696298	2R_15696298_SNP [dm3] 2R_19808793_SNP [dm6]	A	G	3.003e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12047488	X_12047488_SNP [dm3] X_12153455_SNP [dm6]	A	T	3.003e^-4	0.985	INTRON Ten-a
2L	16366433	2L_16366433_SNP [dm3] 2L_16366433_SNP [dm6]	A	G	3.012e^-4	0.985	NON_SYNONYMOUS_CODING jhamt
X	15722546	X_15722546_SNP [dm3] X_15828513_SNP [dm6]	T	A	3.017e^-4	0.985	DOWNSTREAM sd INTRON Chc
X	8571608	X_8571608_SNP [dm3] X_8677575_SNP [dm6]	C	T	3.018e^-4	0.985	INTRON CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	7589095	2L_7589095_SNP [dm3] 2L_7589095_SNP [dm6]	C	G	3.021e^-4	0.985	INTERGENIC
3L	9192834	3L_9192834_SNP [dm3] 3L_9199734_SNP [dm6]	T	C	3.022e^-4	0.985	INTERGENIC
X	4859927	X_4859927_SNP [dm3] X_4965894_SNP [dm6]	C	T	3.033e^-4	0.985	INTRON CR44833	regulatory region REDfly_CRMs
2L	4307732	2L_4307732_SNP [dm3] 2L_4307732_SNP [dm6]	C	T	3.039e^-4	0.985	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15144004	2R_15144004_SNP [dm3] 2R_19256499_SNP [dm6]	G	T	3.040e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16633530	3R_16633530_DEL [dm3] 3R_20807808_DEL [dm6]	CTAAAAAAT	C	3.041e^-4	0.985	UTR_3_PRIME Syp
2L	3046748	2L_3046748_SNP [dm3] 2L_3046748_SNP [dm6]	G	C	3.043e^-4	0.985	INTRON v_2_k05816 EXON CR43708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13892188	3R_13892188_SNP [dm3] 3R_18066466_SNP [dm6]	G	T	3.046e^-4	0.985	INTERGENIC
3L	8305431	3L_8305431_SNP [dm3] 3L_8312331_SNP [dm6]	C	T	3.048e^-4	0.985	SYNONYMOUS_CODING CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3978780	2R_3978780_SNP [dm3] 2R_8091275_SNP [dm6]	T	C	3.057e^-4	0.985	UTR_3_PRIME sut3 UPSTREAM CG8713
2R	13682704	2R_13682704_SNP [dm3] 2R_17795199_SNP [dm6]	G	A	3.065e^-4	0.985	NON_SYNONYMOUS_CODING Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	22068485	3R_22068485_SNP [dm3] 3R_26242763_SNP [dm6]	A	G	3.072e^-4	0.985	INTRON CR42745
2L	12243451	2L_12243451_SNP [dm3] 2L_12243451_SNP [dm6]	A	T	3.077e^-4	0.985	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13609693	3L_13609693_SNP [dm3] 3L_13616593_SNP [dm6]	T	C	3.080e^-4	0.985	INTRON bru-3
2R	12687287	2R_12687287_SNP [dm3] 2R_16799782_SNP [dm6]	A	G	3.085e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4718167	2L_4718167_SNP [dm3] 2L_4718167_SNP [dm6]	A	G	3.086e^-4	0.985	INTRON CG34351
3R	14469755	3R_14469755_SNP [dm3] 3R_18644033_SNP [dm6]	A	T	3.088e^-4	0.985	INTRON qin
3R	25498205	3R_25498205_SNP [dm3] 3R_29672483_SNP [dm6]	A	G	3.092e^-4	0.985	NON_SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a	TF binding site mE1_TFBS_sens
3R	25498206	3R_25498206_SNP [dm3] 3R_29672484_SNP [dm6]	T	C	3.092e^-4	0.985	NON_SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a	TF binding site mE1_TFBS_sens
2L	3040303	2L_3040303_SNP [dm3] 2L_3040303_SNP [dm6]	C	T	3.099e^-4	0.985	NON_SYNONYMOUS_CODING CG17221 UTR_5_PRIME CG17221 UPSTREAM cnir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7815571	2L_7815571_SNP [dm3] 2L_7815571_SNP [dm6]	C	A	3.101e^-4	0.985	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	619562	2L_619562_SNP [dm3] 2L_619562_SNP [dm6]	A	C	3.116e^-4	0.985	DOWNSTREAM lectin-21Cb INTERGENIC
3L	819413	3L_819413_SNP [dm3] 3L_819413_SNP [dm6]	C	A	3.117e^-4	0.985	INTERGENIC
2R	18466843	2R_18466843_SNP [dm3] 2R_22579338_SNP [dm6]	T	A	3.122e^-4	0.985	INTRON dnr1
X	5872308	X_5872308_SNP [dm3] X_5978275_SNP [dm6]	T	A	3.129e^-4	0.985	INTRON Grip
3R	11516106	3R_11516106_SNP [dm3] 3R_15690384_SNP [dm6]	A	C	3.129e^-4	0.985	UTR_3_PRIME pxb	TF binding site mE1_TFBS_HSA
3R	15277947	3R_15277947_SNP [dm3] 3R_19452225_SNP [dm6]	G	A	3.134e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	11014882	2L_11014882_SNP [dm3] 2L_11014882_SNP [dm6]	G	A	3.135e^-4	0.985	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9084704	2R_9084704_SNP [dm3] 2R_13197199_SNP [dm6]	C	A	3.138e^-4	0.985	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10969309	X_10969309_SNP [dm3] X_11075276_SNP [dm6]	G	A	3.147e^-4	0.985	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2L	11014762	2L_11014762_SNP [dm3] 2L_11014762_SNP [dm6]	A	G	3.149e^-4	0.985	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3R	6069674	3R_6069674_SNP [dm3] 3R_10243952_SNP [dm6]	G	A	3.150e^-4	0.985	NON_SYNONYMOUS_CODING CG42795
2L	5848141	2L_5848141_SNP [dm3] 2L_5848141_SNP [dm6]	A	T	3.164e^-4	0.985	INTRON TrissinR
3R	19143288	3R_19143288_SNP [dm3] 3R_23317566_SNP [dm6]	T	G	3.168e^-4	0.985	INTRON pnt
3L	7875903	3L_7875903_SNP [dm3] 3L_7882803_SNP [dm6]	C	T	3.170e^-4	0.985	INTRON CG32365
2L	7484422	2L_7484422_SNP [dm3] 2L_7484422_SNP [dm6]	C	T	3.177e^-4	0.985	INTRON Ziz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15351987	3R_15351987_SNP [dm3] 3R_19526265_SNP [dm6]	C	A	3.178e^-4	0.985	SYNONYMOUS_CODING Dys INTRON Dys
3R	16802369	3R_16802369_SNP [dm3] 3R_20976647_SNP [dm6]	G	T	3.181e^-4	0.985	DOWNSTREAM Atpalpha INTERGENIC
2L	10870411	2L_10870411_SNP [dm3] 2L_10870411_SNP [dm6]	C	T	3.186e^-4	0.985	SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
3L	5758116	3L_5758116_SNP [dm3] 3L_5765016_SNP [dm6]	C	A	3.187e^-4	0.985	UPSTREAM snoRNA:Psi28S-1837c & 3 others INTRON CG10576 EXON unsRNA:CG10576-a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9775828	2R_9775828_SNP [dm3] 2R_13888323_SNP [dm6]	G	T	3.188e^-4	0.985	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	14359962	2L_14359962_SNP [dm3] 2L_14359962_SNP [dm6]	T	C	3.214e^-4	0.985	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
4	364387	4_364387_DEL [dm3] 4_343761_DEL [dm6]	AGAGCCA	A	3.221e^-4	0.985	INTRON PMCA
X	9732526	X_9732526_DEL [dm3] X_9838493_DEL [dm6]	ATGG	A	3.224e^-4	0.985	INTRON CG32698
X	13549607	X_13549607_SNP [dm3] X_13655574_SNP [dm6]	A	C	3.228e^-4	0.985	SYNONYMOUS_CODING NFAT
3L	14337316	3L_14337316_SNP [dm3] 3L_14344216_SNP [dm6]	T	C	3.234e^-4	0.985	INTRON fz
2L	3182869	2L_3182869_SNP [dm3] 2L_3182869_SNP [dm6]	T	A	3.247e^-4	0.985	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5843555	2L_5843555_SNP [dm3] 2L_5843555_SNP [dm6]	G	A	3.249e^-4	0.985	INTRON TrissinR
X	6209815	X_6209815_SNP [dm3] X_6315782_SNP [dm6]	T	G	3.282e^-4	0.985	INTRON CG15894
2L	7103019	2L_7103019_SNP [dm3] 2L_7103019_SNP [dm6]	A	G	3.284e^-4	0.985	INTRON Pvf3
3L	19052126	3L_19052126_SNP [dm3] 3L_19059026_SNP [dm6]	A	C	3.289e^-4	0.985	DOWNSTREAM CG3797 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1235464	3L_1235464_SNP [dm3] 3L_1235464_SNP [dm6]	G	A	3.292e^-4	0.985	UPSTREAM CR45747 & 1 other DOWNSTREAM CG33966 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13582263	3L_13582263_SNP [dm3] 3L_13589163_SNP [dm6]	G	C	3.299e^-4	0.985	INTRON bru-3
2L	5848310	2L_5848310_SNP [dm3] 2L_5848310_SNP [dm6]	G	T	3.300e^-4	0.985	INTRON TrissinR
2L	7013674	2L_7013674_SNP [dm3] 2L_7013674_SNP [dm6]	G	A	3.301e^-4	0.985	NON_SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
2L	7013682	2L_7013682_SNP [dm3] 2L_7013682_SNP [dm6]	A	G	3.301e^-4	0.985	SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	19346823	3R_19346823_SNP [dm3] 3R_23521101_SNP [dm6]	G	T	3.304e^-4	0.985	SYNONYMOUS_CODING CG10177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4236171	2L_4236171_SNP [dm3] 2L_4236171_SNP [dm6]	T	C	3.307e^-4	0.985	INTERGENIC
3L	18113257	3L_18113257_SNP [dm3] 3L_18120157_SNP [dm6]	G	A	3.319e^-4	0.985	NON_SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9502771	2R_9502771_SNP [dm3] 2R_13615266_SNP [dm6]	T	A	3.320e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20251252	3R_20251252_SNP [dm3] 3R_24425530_SNP [dm6]	T	C	3.332e^-4	0.985	INTRON nAChRalpha1
2L	3922933	2L_3922933_SNP [dm3] 2L_3922933_SNP [dm6]	C	A	3.341e^-4	0.985	INTRON fred
X	8087327	X_8087327_SNP [dm3] X_8193294_SNP [dm6]	C	T	3.343e^-4	0.985	START_GAINED sdt UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	6619053	X_6619053_SNP [dm3] X_6725020_SNP [dm6]	T	A	3.347e^-4	0.985	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	20896245	3L_20896245_SNP [dm3] 3L_20903145_SNP [dm6]	G	A	3.350e^-4	0.985	DOWNSTREAM CR45383 INTERGENIC
2L	7074669	2L_7074669_DEL [dm3] 2L_7074669_DEL [dm6]	CGTGGCGGCC	AA	3.360e^-4	0.985	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7290758	2R_7290758_SNP [dm3] 2R_11403253_SNP [dm6]	T	G	3.360e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5648458	2L_5648458_INS [dm3] 2L_5648458_INS [dm6]	A	ATA	3.369e^-4	0.985	INTRON CG31646
3L	7292232	3L_7292232_SNP [dm3] 3L_7299132_SNP [dm6]	C	A	3.369e^-4	0.985	INTRON unc-13-4A
3R	24757184	3R_24757184_SNP [dm3] 3R_28931462_SNP [dm6]	A	G	3.374e^-4	0.985	INTRON CG14521
2L	2486998	2L_2486998_SNP [dm3] 2L_2486998_SNP [dm6]	A	G	3.377e^-4	0.985	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	9239791	3R_9239791_SNP [dm3] 3R_13414069_SNP [dm6]	T	A	3.383e^-4	0.985	INTRON yellow-e
X	3407950	X_3407950_SNP [dm3] X_3513917_SNP [dm6]	A	T	3.387e^-4	0.985	UPSTREAM CG13021 INTRON CR44999 & 1 other
3L	9174610	3L_9174610_SNP [dm3] 3L_9181510_SNP [dm6]	G	A	3.391e^-4	0.985	INTRON Rdl
2L	3400204	2L_3400204_SNP [dm3] 2L_3400204_SNP [dm6]	C	G	3.392e^-4	0.985	INTERGENIC
3L	8215966	3L_8215966_SNP [dm3] 3L_8222866_SNP [dm6]	A	T	3.400e^-4	0.985	UTR_3_PRIME CG13678	TF binding site mE1_TFBS_cad
2L	21786581	2L_21786581_SNP [dm3] 2L_21786581_SNP [dm6]	A	T	3.409e^-4	0.985	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7192827	2L_7192827_SNP [dm3] 2L_7192827_SNP [dm6]	A	G	3.414e^-4	0.985	SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19224920	X_19224920_SNP [dm3] X_19330887_SNP [dm6]	C	G	3.429e^-4	0.985	INTRON nAChRalpha7
2L	8002953	2L_8002953_SNP [dm3] 2L_8002953_SNP [dm6]	C	T	3.440e^-4	0.985	INTRON Wwox
3R	19450173	3R_19450173_SNP [dm3] 3R_23624451_SNP [dm6]	G	T	3.443e^-4	0.985	INTRON CG31145	TF binding site BDTNP1_TFBS_sna
X	2687225	X_2687225_DEL [dm3] X_2793192_DEL [dm6]	AAGTACCC	A	3.444e^-4	0.985	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10644244	3L_10644244_SNP [dm3] 3L_10651144_SNP [dm6]	A	C	3.457e^-4	0.985	INTRON CG32066
X	9739639	X_9739639_SNP [dm3] X_9845606_SNP [dm6]	C	T	3.462e^-4	0.985	INTRON CG32698
3R	15895062	3R_15895062_SNP [dm3] 3R_20069340_SNP [dm6]	C	T	3.463e^-4	0.985	INTERGENIC
3R	13058614	3R_13058614_SNP [dm3] 3R_17232892_SNP [dm6]	T	C	3.467e^-4	0.985	SYNONYMOUS_CODING beat-IIb
3L	2615881	3L_2615881_SNP [dm3] 3L_2615881_SNP [dm6]	A	T	3.471e^-4	0.985	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	12243400	2L_12243400_SNP [dm3] 2L_12243400_SNP [dm6]	A	C	3.487e^-4	0.985	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3940103	3L_3940103_SNP [dm3] 3L_3940103_SNP [dm6]	G	A	3.491e^-4	0.985	UTR_5_PRIME CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
X	12039591	X_12039591_SNP [dm3] X_12145558_SNP [dm6]	A	T	3.506e^-4	0.985	INTRON Ten-a
3R	15890246	3R_15890246_DEL [dm3] 3R_20064524_DEL [dm6]	TCTTT	T	3.507e^-4	0.985	INTERGENIC
2L	1187069	2L_1187069_SNP [dm3] 2L_1187069_SNP [dm6]	G	C	3.514e^-4	0.985	INTRON CG5001	TF binding site mE1_TFBS_HSA
3L	6975649	3L_6975649_SNP [dm3] 3L_6982549_SNP [dm6]	A	C	3.517e^-4	0.985	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15277865	3R_15277865_DEL [dm3] 3R_19452143_DEL [dm6]	TT	T	3.519e^-4	0.985	INTRON CG31221
X	4809195	X_4809195_SNP [dm3] X_4915162_SNP [dm6]	A	T	3.519e^-4	0.985	DOWNSTREAM CG4041 & 1 other INTERGENIC
3L	1066488	3L_1066488_SNP [dm3] 3L_1066488_SNP [dm6]	A	T	3.527e^-4	0.985	INTRON bab1
X	19689638	X_19689638_SNP [dm3] X_19795605_SNP [dm6]	T	C	3.531e^-4	0.985	INTERGENIC
2L	3851925	2L_3851925_SNP [dm3] 2L_3851925_SNP [dm6]	A	G	3.532e^-4	0.985	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	2486992	2L_2486992_SNP [dm3] 2L_2486992_SNP [dm6]	G	T	3.536e^-4	0.985	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	20372029	3R_20372029_SNP [dm3] 3R_24546307_SNP [dm6]	T	G	3.542e^-4	0.985	INTRON Esyt2
3L	3020027	3L_3020027_SNP [dm3] 3L_3020027_SNP [dm6]	C	A	3.546e^-4	0.985	INTERGENIC
X	10011247	X_10011247_SNP [dm3] X_10117214_SNP [dm6]	G	A	3.549e^-4	0.985	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19178467	3L_19178467_SNP [dm3] 3L_19185367_SNP [dm6]	A	G	3.554e^-4	0.985	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7528957	3L_7528957_SNP [dm3] 3L_7535857_SNP [dm6]	C	T	3.555e^-4	0.985	INTRON lqf
3R	16143535	3R_16143535_SNP [dm3] 3R_20317813_SNP [dm6]	T	A	3.556e^-4	0.985	UPSTREAM CG42668 INTRON CG42668
2L	10836834	2L_10836834_DEL [dm3] 2L_10836834_DEL [dm6]	TCGGG	CT	3.558e^-4	0.985	DOWNSTREAM CG6700 INTRON Nos
2L	4725746	2L_4725746_SNP [dm3] 2L_4725746_SNP [dm6]	C	A	3.562e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26038470	3R_26038470_SNP [dm3] 3R_30212748_SNP [dm6]	G	T	3.564e^-4	0.985	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 2 others INTERGENIC
3R	25148579	3R_25148579_SNP [dm3] 3R_29322857_SNP [dm6]	T	A	3.573e^-4	0.985	INTERGENIC
2L	8837095	2L_8837095_SNP [dm3] 2L_8837095_SNP [dm6]	G	A	3.576e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25489211	3R_25489211_SNP [dm3] 3R_29663489_SNP [dm6]	A	C	3.577e^-4	0.985	INTERGENIC
2L	4144494	2L_4144494_DEL [dm3] 2L_4144494_DEL [dm6]	AGTTACA	A	3.589e^-4	0.985	INTERGENIC
2L	2639383	2L_2639383_SNP [dm3] 2L_2639383_SNP [dm6]	T	C	3.595e^-4	0.985	INTERGENIC
X	10722734	X_10722734_SNP [dm3] X_10828701_SNP [dm6]	C	A	3.598e^-4	0.985	INTERGENIC
X	12910078	X_12910078_SNP [dm3] X_13016045_SNP [dm6]	T	C	3.600e^-4	0.985	INTRON rad
3R	13892190	3R_13892190_SNP [dm3] 3R_18066468_SNP [dm6]	A	C	3.600e^-4	0.985	INTERGENIC
3L	4187021	3L_4187021_SNP [dm3] 3L_4187021_SNP [dm6]	A	C	3.603e^-4	0.985	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3047995	X_3047995_SNP [dm3] X_3153962_SNP [dm6]	C	T	3.606e^-4	0.985	INTRON N	TF binding site BDTNP1_TFBS_da
3R	19144377	3R_19144377_SNP [dm3] 3R_23318655_SNP [dm6]	C	A	3.609e^-4	0.985	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5843568	2L_5843568_SNP [dm3] 2L_5843568_SNP [dm6]	G	T	3.613e^-4	0.985	INTRON TrissinR
X	9042223	X_9042223_SNP [dm3] X_9148190_SNP [dm6]	A	G	3.614e^-4	0.985	UTR_3_PRIME fh DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13682205	2R_13682205_SNP [dm3] 2R_17794700_SNP [dm6]	T	C	3.629e^-4	0.985	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	973502	3L_973502_SNP [dm3] 3L_973502_SNP [dm6]	C	A	3.644e^-4	0.985	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6018560	2R_6018560_SNP [dm3] 2R_10131055_SNP [dm6]	A	G	3.647e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8643419	3L_8643419_SNP [dm3] 3L_8650319_SNP [dm6]	T	C	3.657e^-4	0.985	SYNONYMOUS_CODING Pex7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6064270	2L_6064270_SNP [dm3] 2L_6064270_SNP [dm6]	G	C	3.660e^-4	0.985	SYNONYMOUS_CODING Fbw5 DOWNSTREAM CG13994	TF binding site mE1_TFBS_sens
3R	6538198	3R_6538198_SNP [dm3] 3R_10712476_SNP [dm6]	A	G	3.663e^-4	0.985	INTERGENIC
2R	7381794	2R_7381794_SNP [dm3] 2R_11494289_SNP [dm6]	A	C	3.672e^-4	0.985	INTRON inv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18541902	3R_18541902_SNP [dm3] 3R_22716180_SNP [dm6]	A	G	3.673e^-4	0.985	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1584150	3L_1584150_SNP [dm3] 3L_1584150_SNP [dm6]	A	T	3.678e^-4	0.985	INTRON CG13917	TF binding site mE1_TFBS_HSA
3L	12705305	3L_12705305_INS [dm3] 3L_12712205_INS [dm6]	T	TT	3.680e^-4	0.985	INTERGENIC
3R	4380072	3R_4380072_SNP [dm3] 3R_8554350_SNP [dm6]	G	A	3.681e^-4	0.985	DOWNSTREAM Or85d INTERGENIC
3R	13932954	3R_13932954_SNP [dm3] 3R_18107232_SNP [dm6]	T	G	3.682e^-4	0.985	INTRON sr
3R	23780229	3R_23780229_SNP [dm3] 3R_27954507_SNP [dm6]	T	A	3.687e^-4	0.985	UPSTREAM CG5527 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	613574	2L_613574_SNP [dm3] 2L_613574_SNP [dm6]	G	A	3.691e^-4	0.985	INTERGENIC
X	16429995	X_16429995_SNP [dm3] X_16535962_SNP [dm6]	G	A	3.693e^-4	0.985	INTERGENIC
3R	26038349	3R_26038349_SNP [dm3] 3R_30212627_SNP [dm6]	T	A	3.694e^-4	0.985	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 2 others INTERGENIC
3R	15955493	3R_15955493_DEL [dm3] 3R_20129771_DEL [dm6]	AA	A	3.694e^-4	0.985	INTERGENIC
X	16576903	X_16576903_SNP [dm3] X_16682870_SNP [dm6]	G	A	3.709e^-4	0.985	INTRON Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4543775	2R_4543775_SNP [dm3] 2R_8656270_SNP [dm6]	T	C	3.714e^-4	0.985	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25498216	3R_25498216_SNP [dm3] 3R_29672494_SNP [dm6]	G	A	3.715e^-4	0.985	SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a	TF binding site mE1_TFBS_sens
X	20673596	X_20673596_SNP [dm3] X_20802569_SNP [dm6]	A	T	3.717e^-4	0.985	INTRON shakB
3L	6131752	3L_6131752_SNP [dm3] 3L_6138652_SNP [dm6]	A	G	3.719e^-4	0.985	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
2L	11754177	2L_11754177_SNP [dm3] 2L_11754177_SNP [dm6]	T	G	3.728e^-4	0.985	NON_SYNONYMOUS_CODING Sfp33A1 UPSTREAM CG42470 & 1 other
2R	11772441	2R_11772441_SNP [dm3] 2R_15884936_SNP [dm6]	A	C	3.732e^-4	0.985	INTRON sli
3R	17295421	3R_17295421_SNP [dm3] 3R_21469699_SNP [dm6]	T	A	3.734e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_D
X	2688827	X_2688827_SNP [dm3] X_2794794_SNP [dm6]	A	C	3.736e^-4	0.985	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3R	6838451	3R_6838451_SNP [dm3] 3R_11012729_SNP [dm6]	C	G	3.739e^-4	0.985	INTRON CG34114
3L	9176158	3L_9176158_SNP [dm3] 3L_9183058_SNP [dm6]	C	A	3.740e^-4	0.985	UPSTREAM Rdl INTERGENIC
2L	10801415	2L_10801415_SNP [dm3] 2L_10801415_SNP [dm6]	T	G	3.741e^-4	0.985	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2R	18452765	2R_18452765_SNP [dm3] 2R_22565260_SNP [dm6]	G	A	3.742e^-4	0.985	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	19135494	3R_19135494_SNP [dm3] 3R_23309772_SNP [dm6]	G	C	3.760e^-4	0.985	INTRON pnt	TF binding site mE1_TFBS_Trl
2R	7290849	2R_7290849_SNP [dm3] 2R_11403344_SNP [dm6]	A	C	3.761e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9355287	2R_9355287_SNP [dm3] 2R_13467782_SNP [dm6]	A	G	3.764e^-4	0.985	INTRON arr
X	12958133	X_12958133_SNP [dm3] X_13064100_SNP [dm6]	A	G	3.767e^-4	0.985	INTRON rad
2L	3923082	2L_3923082_INS [dm3] 2L_3923082_INS [dm6]	T	TAA	3.769e^-4	0.985	INTRON fred
3R	25492285	3R_25492285_SNP [dm3] 3R_29666563_SNP [dm6]	A	C	3.769e^-4	0.985	DOWNSTREAM ppk20 INTRON ppk21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19681565	X_19681565_SNP [dm3] X_19787532_SNP [dm6]	T	C	3.771e^-4	0.985	INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8300665	3L_8300665_SNP [dm3] 3L_8307565_SNP [dm6]	C	T	3.779e^-4	0.985	UPSTREAM Gr66a INTRON BI-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	4231099	X_4231099_SNP [dm3] X_4337066_SNP [dm6]	A	T	3.785e^-4	0.985	INTRON norpA
X	19874916	X_19874916_SNP [dm3] X_19980883_SNP [dm6]	T	C	3.795e^-4	0.985	INTERGENIC
3L	3020028	3L_3020028_SNP [dm3] 3L_3020028_SNP [dm6]	C	T	3.801e^-4	0.985	INTERGENIC
X	18068828	X_18068828_SNP [dm3] X_18174795_SNP [dm6]	T	C	3.802e^-4	0.985	DOWNSTREAM Frq1 INTERGENIC
3L	1584115	3L_1584115_SNP [dm3] 3L_1584115_SNP [dm6]	C	T	3.810e^-4	0.985	INTRON CG13917	TF binding site mE1_TFBS_HSA
3R	19584858	3R_19584858_SNP [dm3] 3R_23759136_SNP [dm6]	C	T	3.811e^-4	0.985	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1185493	2L_1185493_SNP [dm3] 2L_1185493_SNP [dm6]	G	A	3.816e^-4	0.985	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13646936	3L_13646936_SNP [dm3] 3L_13653836_SNP [dm6]	T	C	3.819e^-4	0.985	INTRON bru-3
3R	17887951	3R_17887951_SNP [dm3] 3R_22062229_SNP [dm6]	A	T	3.821e^-4	0.985	INTRON how
2L	10478309	2L_10478309_SNP [dm3] 2L_10478309_SNP [dm6]	C	A	3.826e^-4	0.985	INTRON RluA-2
3L	16481626	3L_16481626_SNP [dm3] 3L_16488526_SNP [dm6]	T	C	3.841e^-4	0.985	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2R	9089495	2R_9089495_SNP [dm3] 2R_13201990_SNP [dm6]	A	G	3.841e^-4	0.985	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13982695	3L_13982695_INS [dm3] 3L_13989595_INS [dm6]	T	TGATTTGATT	3.847e^-4	0.985	DOWNSTREAM CG9040 INTRON CG17364
3L	9130419	3L_9130419_SNP [dm3] 3L_9137319_SNP [dm6]	C	A	3.853e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3917657	2L_3917657_SNP [dm3] 2L_3917657_SNP [dm6]	C	G	3.854e^-4	0.985	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_cad
2L	4027394	2L_4027394_SNP [dm3] 2L_4027394_SNP [dm6]	C	T	3.855e^-4	0.985	INTERGENIC
2R	6100402	2R_6100402_SNP [dm3] 2R_10212897_SNP [dm6]	C	T	3.859e^-4	0.985	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
X	4231108	X_4231108_SNP [dm3] X_4337075_SNP [dm6]	G	A	3.860e^-4	0.985	INTRON norpA
3L	7015713	3L_7015713_SNP [dm3] 3L_7022613_SNP [dm6]	G	A	3.866e^-4	0.985	INTRON Mp
3L	20996884	3L_20996884_SNP [dm3] 3L_21003784_SNP [dm6]	G	C	3.867e^-4	0.985	NON_SYNONYMOUS_CODING skd INTRON skd
3R	4383673	3R_4383673_SNP [dm3] 3R_8557951_SNP [dm6]	C	A	3.870e^-4	0.985	INTERGENIC
3L	20172161	3L_20172161_SNP [dm3] 3L_20179061_SNP [dm6]	A	G	3.875e^-4	0.985	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13982524	3L_13982524_SNP [dm3] 3L_13989424_SNP [dm6]	T	A	3.895e^-4	0.985	DOWNSTREAM CG9040 INTRON CG17364
2L	12086489	2L_12086489_SNP [dm3] 2L_12086489_SNP [dm6]	T	A	3.911e^-4	0.985	UPSTREAM CR44593 & 1 other DOWNSTREAM CR44592 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26897769	3R_26897769_DEL [dm3] 3R_31072047_DEL [dm6]	TGATAATATAT...	A	3.913e^-4	0.985	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22019037	3R_22019037_INS [dm3] 3R_26193315_INS [dm6]	T	TT	3.914e^-4	0.985	INTERGENIC
3R	15277967	3R_15277967_SNP [dm3] 3R_19452245_SNP [dm6]	G	C	3.919e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	7215504	3R_7215504_DEL [dm3] 3R_11389782_DEL [dm6]	GAGTG	G	3.921e^-4	0.985	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	20251254	3R_20251254_SNP [dm3] 3R_24425532_SNP [dm6]	T	C	3.931e^-4	0.985	INTRON nAChRalpha1
3L	12125108	3L_12125108_SNP [dm3] 3L_12132008_SNP [dm6]	A	T	3.933e^-4	0.985	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13556279	2R_13556279_SNP [dm3] 2R_17668774_SNP [dm6]	G	C	3.948e^-4	0.985	SYNONYMOUS_CODING eIF3-S8 UPSTREAM CG30108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	743122	2L_743122_SNP [dm3] 2L_743122_SNP [dm6]	G	A	3.956e^-4	0.985	INTRON Eaat2
2L	4144243	2L_4144243_DEL [dm3] 2L_4144243_DEL [dm6]	GG	G	3.957e^-4	0.985	INTERGENIC
3L	19052769	3L_19052769_SNP [dm3] 3L_19059669_SNP [dm6]	A	T	3.964e^-4	0.985	UTR_3_PRIME CG3797 DOWNSTREAM CG3797	TF binding site BDTNP1_TFBS_dl
2L	1847923	2L_1847923_SNP [dm3] 2L_1847923_SNP [dm6]	T	A	3.965e^-4	0.985	INTRON wry
4	451888	4_451888_DEL [dm3] 4_431262_DEL [dm6]	TTAGAAATATTTGGT...	T	3.975e^-4	0.985	EXON CR44024	transposable element FlyBase
3R	15277738	3R_15277738_SNP [dm3] 3R_19452016_SNP [dm6]	T	C	3.985e^-4	0.985	INTRON CG31221
3R	26032662	3R_26032662_SNP [dm3] 3R_30206940_SNP [dm6]	G	A	3.987e^-4	0.985	UPSTREAM snoRNA:Psi28S-2149 DOWNSTREAM snoRNA:Psi18S-1377e & 5 others INTRON RpS7
3L	6398605	3L_6398605_SNP [dm3] 3L_6405505_SNP [dm6]	A	C	3.992e^-4	0.985	INTRON CG42747
3R	25237569	3R_25237569_SNP [dm3] 3R_29411847_SNP [dm6]	C	T	3.999e^-4	0.985	INTRON Ptp99A
3L	10644091	3L_10644091_SNP [dm3] 3L_10650991_SNP [dm6]	C	A	4.000e^-4	0.985	INTRON CG32066
2L	4201679	2L_4201679_SNP [dm3] 2L_4201679_SNP [dm6]	A	G	4.002e^-4	0.985	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
X	4859928	X_4859928_SNP [dm3] X_4965895_SNP [dm6]	A	G	4.015e^-4	0.985	INTRON CR44833	regulatory region REDfly_CRMs
3L	6379452	3L_6379452_SNP [dm3] 3L_6386352_SNP [dm6]	G	A	4.022e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15651797	3R_15651797_SNP [dm3] 3R_19826075_SNP [dm6]	T	A	4.027e^-4	0.985	INTRON bnl
2L	5844431	2L_5844431_SNP [dm3] 2L_5844431_SNP [dm6]	C	G	4.030e^-4	0.985	INTRON TrissinR
2R	7888199	2R_7888199_DEL [dm3] 2R_12000694_DEL [dm6]	GAGCCTTTG	G	4.031e^-4	0.985	DOWNSTREAM otk INTERGENIC
2L	3922168	2L_3922168_INS [dm3] 2L_3922168_INS [dm6]	C	CC	4.039e^-4	0.985	INTRON fred
3L	5969196	3L_5969196_DEL [dm3] 3L_5976096_DEL [dm6]	AAGA	A	4.050e^-4	0.985	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	613585	2L_613585_SNP [dm3] 2L_613585_SNP [dm6]	C	T	4.053e^-4	0.985	INTERGENIC
X	2167777	X_2167777_SNP [dm3] X_2273744_SNP [dm6]	T	C	4.054e^-4	0.985	SYNONYMOUS_CODING CG2918	TF binding site mE1_TFBS_sens
3L	11572087	3L_11572087_SNP [dm3] 3L_11578987_SNP [dm6]	C	A	4.064e^-4	0.985	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
2L	3177921	2L_3177921_SNP [dm3] 2L_3177921_SNP [dm6]	C	T	4.075e^-4	0.985	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26334168	3R_26334168_SNP [dm3] 3R_30508446_SNP [dm6]	A	C	4.083e^-4	0.985	SPLICE_SITE_REGION CG34041 DOWNSTREAM CG15539 INTRON CG34041
2R	703977	2R_703977_SNP [dm3] 2R_4816472_SNP [dm6]	A	T	4.085e^-4	0.985	UTR_3_PRIME CG17528 DOWNSTREAM CG17528	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4325198	2L_4325198_SNP [dm3] 2L_4325198_SNP [dm6]	C	A	4.093e^-4	0.985	INTRON CG16857
2L	3920301	2L_3920301_SNP [dm3] 2L_3920301_SNP [dm6]	G	C	4.094e^-4	0.985	INTRON fred
3R	15277872	3R_15277872_SNP [dm3] 3R_19452150_SNP [dm6]	A	G	4.094e^-4	0.985	INTRON CG31221
3R	19157156	3R_19157156_SNP [dm3] 3R_23331434_SNP [dm6]	T	G	4.105e^-4	0.985	INTRON pnt
3R	9330749	3R_9330749_SNP [dm3] 3R_13505027_SNP [dm6]	G	A	4.113e^-4	0.985	INTERGENIC
2L	5672756	2L_5672756_SNP [dm3] 2L_5672756_SNP [dm6]	C	G	4.117e^-4	0.985	INTERGENIC
3L	19328469	3L_19328469_SNP [dm3] 3L_19335369_SNP [dm6]	G	C	4.125e^-4	0.985	INTRON pip
2L	5107266	2L_5107266_SNP [dm3] 2L_5107266_SNP [dm6]	G	C	4.127e^-4	0.985	INTRON Msp300	TF binding site mE1_TFBS_Trl
2L	2132705	2L_2132705_SNP [dm3] 2L_2132705_SNP [dm6]	A	G	4.127e^-4	0.985	INTRON GlyP
3R	15528845	3R_15528845_DEL [dm3] 3R_19703123_DEL [dm6]	GCTTAAATGTCACTG...	G	4.137e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9829670	3R_9829670_SNP [dm3] 3R_14003948_SNP [dm6]	T	C	4.150e^-4	0.985	INTRON rdx
X	16429554	X_16429554_SNP [dm3] X_16535521_SNP [dm6]	C	A	4.156e^-4	0.985	INTERGENIC
3L	918845	3L_918845_SNP [dm3] 3L_918845_SNP [dm6]	C	A	4.164e^-4	0.985	INTRON Glut1
3R	25493941	3R_25493941_SNP [dm3] 3R_29668219_SNP [dm6]	G	A	4.187e^-4	0.985	NON_SYNONYMOUS_CODING ppk20 UPSTREAM ppk30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4144854	2L_4144854_SNP [dm3] 2L_4144854_SNP [dm6]	A	G	4.194e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9130329	3L_9130329_SNP [dm3] 3L_9137229_SNP [dm6]	T	C	4.200e^-4	0.985	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17187288	3L_17187288_DEL [dm3] 3L_17194188_DEL [dm6]	CC	C	4.201e^-4	0.985	INTRON Rbp6
2L	1037326	2L_1037326_SNP [dm3] 2L_1037326_SNP [dm6]	T	A	4.210e^-4	0.985	UTR_5_PRIME CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10796114	2L_10796114_INS [dm3] 2L_10796114_INS [dm6]	TTTTTTG	CCAGCTCGAA	4.211e^-4	0.985	INTRON CG31869
3R	7352330	3R_7352330_SNP [dm3] 3R_11526608_SNP [dm6]	T	C	4.218e^-4	0.985	INTERGENIC
3R	19144473	3R_19144473_SNP [dm3] 3R_23318751_SNP [dm6]	G	T	4.231e^-4	0.985	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15785381	3R_15785381_SNP [dm3] 3R_19959659_SNP [dm6]	G	C	4.235e^-4	0.985	INTRON Hs6st
3R	19586632	3R_19586632_SNP [dm3] 3R_23760910_SNP [dm6]	G	C	4.238e^-4	0.985	UTR_3_PRIME CG10217 UPSTREAM CG10219	TF binding site BDTNP1_TFBS_dl
3L	10223760	3L_10223760_SNP [dm3] 3L_10230660_SNP [dm6]	C	A	4.252e^-4	0.985	INTERGENIC
X	8553578	X_8553578_SNP [dm3] X_8659545_SNP [dm6]	G	A	4.259e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	4723123	2L_4723123_SNP [dm3] 2L_4723123_SNP [dm6]	T	C	4.262e^-4	0.985	DOWNSTREAM CG34351 INTERGENIC
4	333939	4_333939_SNP [dm3] 4_313313_SNP [dm6]	C	T	4.264e^-4	0.985	INTRON Zip102B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	18470208	X_18470208_SNP [dm3] X_18576175_SNP [dm6]	A	G	4.272e^-4	0.985	INTERGENIC
X	18470210	X_18470210_SNP [dm3] X_18576177_SNP [dm6]	T	A	4.272e^-4	0.985	INTERGENIC
3L	18111197	3L_18111197_SNP [dm3] 3L_18118097_SNP [dm6]	A	C	4.277e^-4	0.985	UTR_3_PRIME CG32195 INTRON CG7341
3L	17978870	3L_17978870_SNP [dm3] 3L_17985770_SNP [dm6]	G	A	4.279e^-4	0.985	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	4063015	3L_4063015_SNP [dm3] 3L_4063015_SNP [dm6]	T	C	4.281e^-4	0.985	INTRON dib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3922139	2L_3922139_SNP [dm3] 2L_3922139_SNP [dm6]	T	G	4.283e^-4	0.985	INTRON fred
3L	2583132	3L_2583132_SNP [dm3] 3L_2583132_SNP [dm6]	A	C	4.285e^-4	0.985	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12319367	3L_12319367_SNP [dm3] 3L_12326267_SNP [dm6]	C	T	4.286e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3851912	2L_3851912_INS [dm3] 2L_3851912_INS [dm6]	T	TGTACAC	4.288e^-4	0.985	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12586596	2L_12586596_SNP [dm3] 2L_12586596_SNP [dm6]	C	T	4.288e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	23839227	3R_23839227_SNP [dm3] 3R_28013505_SNP [dm6]	C	T	4.319e^-4	0.985	INTERGENIC
2L	9499356	2L_9499356_INS [dm3] 2L_9499356_INS [dm6]	T	TGTTT	4.329e^-4	0.985	INTRON CG33298	TF binding site BDTNP1_TFBS_twi
2L	11422763	2L_11422763_INS [dm3] 2L_11422763_INS [dm6]	G	GCT	4.332e^-4	0.985	INTERGENIC
2L	3923075	2L_3923075_SNP [dm3] 2L_3923075_SNP [dm6]	G	A	4.342e^-4	0.985	INTRON fred
3R	15785368	3R_15785368_SNP [dm3] 3R_19959646_SNP [dm6]	C	T	4.343e^-4	0.985	INTRON Hs6st
3R	5087636	3R_5087636_SNP [dm3] 3R_9261914_SNP [dm6]	G	T	4.345e^-4	0.985	SYNONYMOUS_CODING VhaM8.9 DOWNSTREAM sage
X	9930463	X_9930463_SNP [dm3] X_10036430_SNP [dm6]	A	T	4.346e^-4	0.985	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	13733768	2L_13733768_SNP [dm3] 2L_13733768_SNP [dm6]	C	T	4.367e^-4	0.985	INTERGENIC
3R	20485222	3R_20485222_SNP [dm3] 3R_24659500_SNP [dm6]	A	T	4.378e^-4	0.985	UPSTREAM CG31126 DOWNSTREAM mir-1003 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16149214	2L_16149214_SNP [dm3] 2L_16149214_SNP [dm6]	T	G	4.383e^-4	0.985	INTERGENIC
2L	4340720	2L_4340720_SNP [dm3] 2L_4340720_SNP [dm6]	A	G	4.389e^-4	0.985	INTRON Atet
2L	9705054	2L_9705054_SNP [dm3] 2L_9705054_SNP [dm6]	T	A	4.392e^-4	0.985	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16869565	3R_16869565_DEL [dm3] 3R_21043843_DEL [dm6]	ATGTA	A	4.402e^-4	0.985	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11422846	2L_11422846_SNP [dm3] 2L_11422846_SNP [dm6]	T	A	4.407e^-4	0.985	INTERGENIC
3L	13982526	3L_13982526_SNP [dm3] 3L_13989426_SNP [dm6]	T	G	4.417e^-4	0.985	DOWNSTREAM CG9040 INTRON CG17364
3L	12335447	3L_12335447_SNP [dm3] 3L_12342347_SNP [dm6]	G	A	4.422e^-4	0.985	SYNONYMOUS_CODING CrzR
3L	2514778	3L_2514778_SNP [dm3] 3L_2514778_SNP [dm6]	G	C	4.424e^-4	0.985	INTRON Spn
2R	12420240	2R_12420240_SNP [dm3] 2R_16532735_SNP [dm6]	C	G	4.424e^-4	0.985	UTR_3_PRIME Sema-2a
2L	10210622	2L_10210622_SNP [dm3] 2L_10210622_SNP [dm6]	A	G	4.425e^-4	0.985	UTR_5_PRIME CG5727 UPSTREAM CG5731 & 1 other DOWNSTREAM CR44845	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	8963150	2L_8963150_SNP [dm3] 2L_8963150_SNP [dm6]	T	A	4.427e^-4	0.985	NON_SYNONYMOUS_CODING CG32985 UPSTREAM CG9525
3R	15277924	3R_15277924_SNP [dm3] 3R_19452202_SNP [dm6]	G	A	4.431e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
2R	6018553	2R_6018553_DEL [dm3] 2R_10131048_DEL [dm6]	ACA	T	4.435e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10836826	2L_10836826_SNP [dm3] 2L_10836826_SNP [dm6]	A	C	4.437e^-4	0.985	DOWNSTREAM CG6700 INTRON Nos
2L	5843670	2L_5843670_SNP [dm3] 2L_5843670_SNP [dm6]	A	C	4.460e^-4	0.985	INTRON TrissinR
3R	26898269	3R_26898269_SNP [dm3] 3R_31072547_SNP [dm6]	G	A	4.472e^-4	0.985	INTRON Sox100B
X	2713719	X_2713719_SNP [dm3] X_2819686_SNP [dm6]	G	A	4.475e^-4	0.985	INTRON kirre
4	292616	4_292616_SNP [dm3] 4_271990_SNP [dm6]	A	C	4.480e^-4	0.985	NON_SYNONYMOUS_CODING NfI
4	304113	4_304113_SNP [dm3] 4_283487_SNP [dm6]	T	G	4.480e^-4	0.985	INTRON Syt7	transposable element FlyBase
2R	6018557	2R_6018557_SNP [dm3] 2R_10131052_SNP [dm6]	A	G	4.481e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6018558	2R_6018558_SNP [dm3] 2R_10131053_SNP [dm6]	T	G	4.481e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6018562	2R_6018562_SNP [dm3] 2R_10131057_SNP [dm6]	G	A	4.481e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6018564	2R_6018564_INS [dm3] 2R_10131059_INS [dm6]	C	CA	4.481e^-4	0.985	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2713762	X_2713762_SNP [dm3] X_2819729_SNP [dm6]	A	C	4.487e^-4	0.985	INTRON kirre
3L	11144633	3L_11144633_SNP [dm3] 3L_11151533_SNP [dm6]	A	C	4.491e^-4	0.985	SYNONYMOUS_CODING CG32082 UPSTREAM CG6216
3L	6389829	3L_6389829_SNP [dm3] 3L_6396729_SNP [dm6]	A	T	4.502e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2193746	X_2193746_SNP [dm3] X_2299713_SNP [dm6]	T	C	4.510e^-4	0.985	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14969127	2R_14969127_SNP [dm3] 2R_19081622_SNP [dm6]	T	G	4.511e^-4	0.985	INTRON 5-HT1A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19157283	3R_19157283_SNP [dm3] 3R_23331561_SNP [dm6]	G	A	4.511e^-4	0.985	INTRON pnt
2L	2565301	2L_2565301_SNP [dm3] 2L_2565301_SNP [dm6]	T	C	4.512e^-4	0.985	SPLICE_SITE_REGION Cyp309a2 UPSTREAM Cyp309a1 INTRON Cyp309a2
2R	6282512	2R_6282512_SNP [dm3] 2R_10395007_SNP [dm6]	G	A	4.517e^-4	0.985	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3L	9633721	3L_9633721_SNP [dm3] 3L_9640621_SNP [dm6]	C	A	4.521e^-4	0.985	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry
2R	11207459	2R_11207459_SNP [dm3] 2R_15319954_SNP [dm6]	C	T	4.528e^-4	0.985	SYNONYMOUS_CODING CG8155
3R	25503614	3R_25503614_SNP [dm3] 3R_29677892_SNP [dm6]	T	C	4.531e^-4	0.985	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
3L	8722424	3L_8722424_SNP [dm3] 3L_8729324_SNP [dm6]	C	T	4.536e^-4	0.985	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2L	14285889	2L_14285889_SNP [dm3] 2L_14285889_SNP [dm6]	G	A	4.537e^-4	0.985	INTRON wb
X	17196910	X_17196910_SNP [dm3] X_17302877_SNP [dm6]	T	A	4.542e^-4	0.985	UTR_5_PRIME CG5445 UPSTREAM Fim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	11754400	2L_11754400_SNP [dm3] 2L_11754400_SNP [dm6]	C	A	4.546e^-4	0.985	UPSTREAM CG42470 & 1 other INTRON Sfp33A1
3R	22051807	3R_22051807_DEL [dm3] 3R_26226085_DEL [dm6]	CTAAAGCAT	C	4.554e^-4	0.985	INTERGENIC
2L	21827408	2L_21827408_SNP [dm3] 2L_21827408_SNP [dm6]	T	A	4.564e^-4	0.985	INTERGENIC	transposable element FlyBase
2L	3921182	2L_3921182_SNP [dm3] 2L_3921182_SNP [dm6]	G	C	4.571e^-4	0.985	INTRON fred
2L	3048133	2L_3048133_SNP [dm3] 2L_3048133_SNP [dm6]	C	T	4.574e^-4	0.985	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7791880	2L_7791880_SNP [dm3] 2L_7791880_SNP [dm6]	A	G	4.586e^-4	0.985	INTRON LKR
3L	12859693	3L_12859693_DEL [dm3] 3L_12866593_DEL [dm6]	TCCC	T	4.589e^-4	0.985	INTERGENIC
3L	2073447	3L_2073447_SNP [dm3] 3L_2073447_SNP [dm6]	G	A	4.591e^-4	0.985	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16516145	X_16516145_SNP [dm3] X_16622112_SNP [dm6]	T	A	4.593e^-4	0.985	UPSTREAM CG9782 INTERGENIC
3R	14151915	3R_14151915_SNP [dm3] 3R_18326193_SNP [dm6]	G	A	4.594e^-4	0.985	SYNONYMOUS_CODING CG31235	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7292234	3L_7292234_SNP [dm3] 3L_7299134_SNP [dm6]	G	A	4.596e^-4	0.985	INTRON unc-13-4A
3R	25497424	3R_25497424_SNP [dm3] 3R_29671702_SNP [dm6]	G	T	4.616e^-4	0.985	UTR_5_PRIME Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14359958	2L_14359958_SNP [dm3] 2L_14359958_SNP [dm6]	A	C	4.624e^-4	0.985	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10836801	2L_10836801_DEL [dm3] 2L_10836801_DEL [dm6]	ATAATGGGATTGTCGGGATA...	A	4.624e^-4	0.985	DOWNSTREAM CG6700 INTRON Nos
3L	8577193	3L_8577193_SNP [dm3] 3L_8584093_SNP [dm6]	A	T	4.636e^-4	0.985	INTRON CG43078
3R	23781774	3R_23781774_SNP [dm3] 3R_27956052_SNP [dm6]	C	A	4.647e^-4	0.985	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2555746	2L_2555746_SNP [dm3] 2L_2555746_SNP [dm6]	C	T	4.651e^-4	0.985	UPSTREAM CR44113 INTERGENIC
2L	18887499	2L_18887499_SNP [dm3] 2L_18887499_SNP [dm6]	T	A	4.659e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10326057	2R_10326057_SNP [dm3] 2R_14438552_SNP [dm6]	T	C	4.660e^-4	0.985	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9903501	X_9903501_SNP [dm3] X_10009468_SNP [dm6]	A	G	4.667e^-4	0.985	INTRON CG33557	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6451792	3R_6451792_SNP [dm3] 3R_10626070_SNP [dm6]	G	T	4.669e^-4	0.985	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9217415	2R_9217415_SNP [dm3] 2R_13329910_SNP [dm6]	T	A	4.671e^-4	0.985	UPSTREAM mir-184 EXON CR44206
3R	15278062	3R_15278062_SNP [dm3] 3R_19452340_SNP [dm6]	T	A	4.676e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	1463302	3L_1463302_SNP [dm3] 3L_1463302_SNP [dm6]	A	G	4.686e^-4	0.985	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13892300	3R_13892300_DEL [dm3] 3R_18066578_DEL [dm6]	CA	C	4.696e^-4	0.985	INTERGENIC
3R	16871267	3R_16871267_SNP [dm3] 3R_21045545_SNP [dm6]	A	G	4.697e^-4	0.985	SYNONYMOUS_CODING CG31189 DOWNSTREAM CG12278 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4715495	2L_4715495_SNP [dm3] 2L_4715495_SNP [dm6]	T	C	4.697e^-4	0.985	INTRON CG34351
3L	1022581	3L_1022581_SNP [dm3] 3L_1022581_SNP [dm6]	T	C	4.706e^-4	0.985	INTRON trio
3R	26896439	3R_26896439_SNP [dm3] 3R_31070717_SNP [dm6]	C	T	4.712e^-4	0.985	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7103106	2L_7103106_SNP [dm3] 2L_7103106_SNP [dm6]	G	A	4.724e^-4	0.985	INTRON Pvf3
3R	15277884	3R_15277884_SNP [dm3] 3R_19452162_SNP [dm6]	A	T	4.741e^-4	0.985	INTRON CG31221
2L	3048105	2L_3048105_SNP [dm3] 2L_3048105_SNP [dm6]	A	C	4.742e^-4	0.985	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21268126	3R_21268126_SNP [dm3] 3R_25442404_SNP [dm6]	G	A	4.757e^-4	0.985	INTRON Fur1	TF binding site mE1_TFBS_Kr
2R	11241847	2R_11241847_SNP [dm3] 2R_15354342_SNP [dm6]	G	A	4.770e^-4	0.985	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	3570920	3R_3570920_SNP [dm3] 3R_7745198_SNP [dm6]	T	G	4.771e^-4	0.985	INTERGENIC
3R	11422299	3R_11422299_SNP [dm3] 3R_15596577_SNP [dm6]	T	A	4.779e^-4	0.985	INTERGENIC
X	4615852	X_4615852_SNP [dm3] X_4721819_SNP [dm6]	T	C	4.791e^-4	0.985	INTRON Proc-R
3R	7179369	3R_7179369_SNP [dm3] 3R_11353647_SNP [dm6]	G	T	4.799e^-4	0.985	UPSTREAM KP78a & 1 other INTRON pros	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5374503	2L_5374503_SNP [dm3] 2L_5374503_SNP [dm6]	T	C	4.800e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8721051	3L_8721051_SNP [dm3] 3L_8727951_SNP [dm6]	T	A	4.804e^-4	0.985	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
X	8087745	X_8087745_DEL [dm3] X_8193712_DEL [dm6]	TTA	T	4.804e^-4	0.985	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10210620	2L_10210620_SNP [dm3] 2L_10210620_SNP [dm6]	C	A	4.805e^-4	0.985	UTR_5_PRIME CG5727 UPSTREAM CG5731 & 1 other DOWNSTREAM CR44845	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	9502794	2R_9502794_SNP [dm3] 2R_13615289_SNP [dm6]	A	G	4.807e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9689712	X_9689712_SNP [dm3] X_9795679_SNP [dm6]	T	A	4.808e^-4	0.985	INTRON CG32698
3R	4400908	3R_4400908_SNP [dm3] 3R_8575186_SNP [dm6]	G	C	4.813e^-4	0.985	INTERGENIC
X	19664623	X_19664623_SNP [dm3] X_19770590_SNP [dm6]	C	T	4.815e^-4	0.985	INTRON vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4863066	X_4863066_SNP [dm3] X_4969033_SNP [dm6]	T	G	4.815e^-4	0.985	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7552537	2L_7552537_DEL [dm3] 2L_7552537_DEL [dm6]	TT	T	4.816e^-4	0.985	INTRON RapGAP1
3R	16869437	3R_16869437_SNP [dm3] 3R_21043715_SNP [dm6]	A	C	4.824e^-4	0.985	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	2946917	3L_2946917_SNP [dm3] 3L_2946917_SNP [dm6]	T	C	4.836e^-4	0.985	DOWNSTREAM Shab INTRON Shab
3R	26893170	3R_26893170_SNP [dm3] 3R_31067448_SNP [dm6]	A	T	4.836e^-4	0.985	INTRON Sox100B
2L	5844432	2L_5844432_SNP [dm3] 2L_5844432_SNP [dm6]	T	A	4.842e^-4	0.985	INTRON TrissinR
4	290392	4_290392_DEL [dm3] 4_269766_DEL [dm6]	TA	C	4.852e^-4	0.985	UTR_3_PRIME NfI
2R	18449520	2R_18449520_SNP [dm3] 2R_22562015_SNP [dm6]	T	G	4.858e^-4	0.985	UTR_5_PRIME px UPSTREAM CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10984320	2R_10984320_SNP [dm3] 2R_15096815_SNP [dm6]	T	A	4.861e^-4	0.985	INTERGENIC
2L	4891999	2L_4891999_SNP [dm3] 2L_4891999_SNP [dm6]	T	C	4.883e^-4	0.985	UPSTREAM CG3036 & 1 other DOWNSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3L	606985	3L_606985_SNP [dm3] 3L_606985_SNP [dm6]	A	G	4.886e^-4	0.985	UPSTREAM Reg-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7095768	2L_7095768_SNP [dm3] 2L_7095768_SNP [dm6]	G	A	4.887e^-4	0.985	INTERGENIC
2L	15270563	2L_15270563_SNP [dm3] 2L_15270563_SNP [dm6]	G	T	4.888e^-4	0.985	UPSTREAM Cul3 INTRON Cul3	TF binding site BDTNP1_TFBS_dl
2L	3922141	2L_3922141_SNP [dm3] 2L_3922141_SNP [dm6]	T	G	4.895e^-4	0.985	INTRON fred
2L	1311766	2L_1311766_SNP [dm3] 2L_1311766_SNP [dm6]	G	C	4.903e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	18999178	3R_18999178_SNP [dm3] 3R_23173456_SNP [dm6]	T	C	4.904e^-4	0.985	UPSTREAM Irk1 INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12488121	3L_12488121_SNP [dm3] 3L_12495021_SNP [dm6]	A	T	4.906e^-4	0.985	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15524618	3R_15524618_SNP [dm3] 3R_19698896_SNP [dm6]	G	A	4.911e^-4	0.985	DOWNSTREAM Naam INTERGENIC
X	4085326	X_4085326_SNP [dm3] X_4191293_SNP [dm6]	T	A	4.913e^-4	0.985	INTRON Fas2
2L	1378443	2L_1378443_SNP [dm3] 2L_1378443_SNP [dm6]	A	G	4.931e^-4	0.985	INTERGENIC
X	9041989	X_9041989_DEL [dm3] X_9147956_DEL [dm6]	TC	T	4.932e^-4	0.985	DOWNSTREAM fh & 1 other INTERGENIC
3L	1463268	3L_1463268_SNP [dm3] 3L_1463268_SNP [dm6]	G	A	4.936e^-4	0.985	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3923024	2L_3923024_SNP [dm3] 2L_3923024_SNP [dm6]	T	A	4.941e^-4	0.985	INTRON fred
3L	1889687	3L_1889687_SNP [dm3] 3L_1889687_SNP [dm6]	A	G	4.945e^-4	0.985	UTR_5_PRIME Tmhs INTRON Tmhs
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	4.952e^-4	0.985	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	5481104	3R_5481104_SNP [dm3] 3R_9655382_SNP [dm6]	T	C	4.962e^-4	0.985	INTRON CG9492	TF binding site mE1_TFBS_chinmo
3R	17208056	3R_17208056_SNP [dm3] 3R_21382334_SNP [dm6]	C	T	4.967e^-4	0.985	DOWNSTREAM tin INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22012361	3R_22012361_SNP [dm3] 3R_26186639_SNP [dm6]	G	A	4.972e^-4	0.985	UTR_3_PRIME CG31323 DOWNSTREAM CG6073 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10526396	3L_10526396_SNP [dm3] 3L_10533296_SNP [dm6]	C	A	4.975e^-4	0.985	INTRON A2bp1
2L	4234024	2L_4234024_SNP [dm3] 2L_4234024_SNP [dm6]	G	T	4.977e^-4	0.985	INTERGENIC
2L	12766208	2L_12766208_SNP [dm3] 2L_12766208_SNP [dm6]	C	A	4.984e^-4	0.985	INTERGENIC
4	282765	4_282765_SNP [dm3] 4_262139_SNP [dm6]	A	T	4.994e^-4	0.985	UTR_3_PRIME RhoGAP102A INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19681330	X_19681330_SNP [dm3] X_19787297_SNP [dm6]	T	C	4.999e^-4	0.985	SPLICE_SITE_ACCEPTOR CR44885 INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18835181	3L_18835181_SNP [dm3] 3L_18842081_SNP [dm6]	A	G	5.006e^-4	0.985	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18835182	3L_18835182_SNP [dm3] 3L_18842082_SNP [dm6]	C	G	5.012e^-4	0.985	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5085234	3R_5085234_DEL [dm3] 3R_9259512_DEL [dm6]	ATA	A	5.014e^-4	0.985	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26038799	3R_26038799_SNP [dm3] 3R_30213077_SNP [dm6]	G	C	5.018e^-4	0.985	DOWNSTREAM CecB & 1 other EXON Cec2
2R	13532562	2R_13532562_SNP [dm3] 2R_17645057_SNP [dm6]	G	T	5.022e^-4	0.985	INTERGENIC
X	3522638	X_3522638_SNP [dm3] X_3628605_SNP [dm6]	G	A	5.035e^-4	0.985	INTRON AstA-R1
3L	18152320	3L_18152320_SNP [dm3] 3L_18159220_SNP [dm6]	C	T	5.035e^-4	0.985	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3939472	2L_3939472_SNP [dm3] 2L_3939472_SNP [dm6]	C	T	5.038e^-4	0.985	INTRON fred
3R	25436650	3R_25436650_SNP [dm3] 3R_29610928_SNP [dm6]	C	T	5.038e^-4	0.985	INTRON alph	TF binding site mE1_TFBS_chinmo
X	9777748	X_9777748_SNP [dm3] X_9883715_SNP [dm6]	G	A	5.039e^-4	0.985	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
3L	16801790	3L_16801790_SNP [dm3] 3L_16808690_SNP [dm6]	C	T	5.040e^-4	0.985	SPLICE_SITE_REGION nudC UPSTREAM CG9674 DOWNSTREAM CG13024 INTRON nudC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens
3R	7711727	3R_7711727_SNP [dm3] 3R_11886005_SNP [dm6]	C	T	5.042e^-4	0.985	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	7992298	X_7992298_SNP [dm3] X_8098265_SNP [dm6]	C	T	5.043e^-4	0.985	SYNONYMOUS_CODING CG2258	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	11422772	2L_11422772_SNP [dm3] 2L_11422772_SNP [dm6]	G	A	5.045e^-4	0.985	INTERGENIC
2R	17867160	2R_17867160_SNP [dm3] 2R_21979655_SNP [dm6]	A	C	5.054e^-4	0.985	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16477302	3L_16477302_SNP [dm3] 3L_16484202_SNP [dm6]	G	T	5.059e^-4	0.985	UPSTREAM aos INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	637262	2L_637262_SNP [dm3] 2L_637262_SNP [dm6]	C	A	5.062e^-4	0.985	INTERGENIC
3L	12422408	3L_12422408_DEL [dm3] 3L_12429308_DEL [dm6]	TT	T	5.073e^-4	0.985	INTRON toe
2L	3048130	2L_3048130_SNP [dm3] 2L_3048130_SNP [dm6]	T	C	5.080e^-4	0.985	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16251477	2R_16251477_SNP [dm3] 2R_20363972_SNP [dm6]	A	C	5.080e^-4	0.985	INTERGENIC
3L	3399262	3L_3399262_SNP [dm3] 3L_3399262_SNP [dm6]	C	A	5.086e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13059011	2L_13059011_SNP [dm3] 2L_13059011_SNP [dm6]	G	A	5.086e^-4	0.985	INTRON CG9932
3L	3938131	3L_3938131_SNP [dm3] 3L_3938131_SNP [dm6]	C	A	5.091e^-4	0.985	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
2R	16243359	2R_16243359_SNP [dm3] 2R_20355854_SNP [dm6]	A	G	5.094e^-4	0.985	UPSTREAM CG11192 INTERGENIC
X	4124628	X_4124628_SNP [dm3] X_4230595_SNP [dm6]	C	A	5.115e^-4	0.985	INTERGENIC
3R	20904477	3R_20904477_SNP [dm3] 3R_25078755_SNP [dm6]	A	C	5.123e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	2861654	2L_2861654_SNP [dm3] 2L_2861654_SNP [dm6]	T	C	5.128e^-4	0.985	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	20844545	3R_20844545_SNP [dm3] 3R_25018823_SNP [dm6]	C	T	5.128e^-4	0.985	SYNONYMOUS_CODING tnc
3R	15528882	3R_15528882_SNP [dm3] 3R_19703160_SNP [dm6]	C	T	5.130e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	774722	2L_774722_SNP [dm3] 2L_774722_SNP [dm6]	T	G	5.131e^-4	0.985	DOWNSTREAM CG12506 INTERGENIC
2L	774723	2L_774723_SNP [dm3] 2L_774723_SNP [dm6]	G	A	5.131e^-4	0.985	DOWNSTREAM CG12506 INTERGENIC
2L	774747	2L_774747_SNP [dm3] 2L_774747_SNP [dm6]	T	A	5.131e^-4	0.985	DOWNSTREAM CG12506 INTERGENIC
2L	12243431	2L_12243431_SNP [dm3] 2L_12243431_SNP [dm6]	C	T	5.132e^-4	0.985	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9593733	2R_9593733_SNP [dm3] 2R_13706228_SNP [dm6]	A	G	5.133e^-4	0.985	INTRON fas
3L	8947701	3L_8947701_SNP [dm3] 3L_8954601_SNP [dm6]	G	T	5.133e^-4	0.985	UPSTREAM GNBP3 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20649755	3R_20649755_SNP [dm3] 3R_24824033_SNP [dm6]	C	T	5.141e^-4	0.985	NON_SYNONYMOUS_CODING niki	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8367076	2L_8367076_SNP [dm3] 2L_8367076_SNP [dm6]	A	T	5.155e^-4	0.985	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	3445638	2L_3445638_SNP [dm3] 2L_3445638_SNP [dm6]	T	C	5.164e^-4	0.985	UPSTREAM CG2772 INTERGENIC
2L	8034938	2L_8034938_SNP [dm3] 2L_8034938_SNP [dm6]	G	A	5.165e^-4	0.985	INTRON CG7367 & 1 other
4	442383	4_442383_SNP [dm3] 4_421757_SNP [dm6]	T	G	5.171e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20156980	3L_20156980_SNP [dm3] 3L_20163880_SNP [dm6]	C	T	5.181e^-4	0.985	SYNONYMOUS_CODING CG42674 INTRON CG42674	TF binding site mE1_TFBS_chinmo
2R	7315563	2R_7315563_SNP [dm3] 2R_11428058_SNP [dm6]	A	G	5.188e^-4	0.985	UPSTREAM Drip INTRON Drip
3L	12205823	3L_12205823_SNP [dm3] 3L_12212723_SNP [dm6]	G	T	5.191e^-4	0.985	SYNONYMOUS_CODING app DOWNSTREAM app INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6485600	2L_6485600_SNP [dm3] 2L_6485600_SNP [dm6]	C	A	5.191e^-4	0.985	SYNONYMOUS_CODING DLP
2L	3923069	2L_3923069_SNP [dm3] 2L_3923069_SNP [dm6]	A	T	5.197e^-4	0.985	INTRON fred
2L	613568	2L_613568_SNP [dm3] 2L_613568_SNP [dm6]	G	C	5.214e^-4	0.985	INTERGENIC
3L	14191566	3L_14191566_SNP [dm3] 3L_14198466_SNP [dm6]	T	A	5.214e^-4	0.985	INTRON nuf
3L	953390	3L_953390_SNP [dm3] 3L_953390_SNP [dm6]	T	C	5.220e^-4	0.985	INTRON Glut1
3R	6663531	3R_6663531_SNP [dm3] 3R_10837809_SNP [dm6]	T	G	5.226e^-4	0.985	INTRON Cad86C	TF binding site mE1_TFBS_cad
3L	8305366	3L_8305366_SNP [dm3] 3L_8312266_SNP [dm6]	A	T	5.235e^-4	0.985	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20673572	X_20673572_DEL [dm3] X_20802545_DEL [dm6]	TC	T	5.236e^-4	0.985	INTRON shakB
2L	8510363	2L_8510363_SNP [dm3] 2L_8510363_SNP [dm6]	C	A	5.238e^-4	0.985	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26449997	3R_26449997_SNP [dm3] 3R_30624275_SNP [dm6]	A	G	5.245e^-4	0.985	DOWNSTREAM CR44136 INTERGENIC
3R	15785382	3R_15785382_SNP [dm3] 3R_19959660_SNP [dm6]	T	C	5.247e^-4	0.985	INTRON Hs6st
X	4615836	X_4615836_SNP [dm3] X_4721803_SNP [dm6]	T	C	5.248e^-4	0.985	INTRON Proc-R
X	3407057	X_3407057_SNP [dm3] X_3513024_SNP [dm6]	T	G	5.249e^-4	0.985	SYNONYMOUS_CODING CG32791 INTRON CR44999
3L	9631128	3L_9631128_INS [dm3] 3L_9638028_INS [dm6]	G	TAATAC	5.249e^-4	0.985	UPSTREAM CG8329 INTRON fry	TF binding site mE1_TFBS_cad
3L	9631130	3L_9631130_MNP [dm3] 3L_9638030_MNP [dm6]	TGG	AAT	5.249e^-4	0.985	UPSTREAM CG8329 INTRON fry
3L	9631139	3L_9631139_SNP [dm3] 3L_9638039_SNP [dm6]	G	T	5.249e^-4	0.985	UPSTREAM CG8329 INTRON fry
2L	3292796	2L_3292796_SNP [dm3] 2L_3292796_SNP [dm6]	A	T	5.257e^-4	0.985	SYNONYMOUS_CODING CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6981702	2L_6981702_SNP [dm3] 2L_6981702_SNP [dm6]	A	T	5.260e^-4	0.985	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26448833	3R_26448833_SNP [dm3] 3R_30623111_SNP [dm6]	A	T	5.263e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8034992	2L_8034992_SNP [dm3] 2L_8034992_SNP [dm6]	G	C	5.264e^-4	0.985	INTRON CG7367 & 1 other
3L	22497542	3L_22497542_SNP [dm3] 3L_22504442_SNP [dm6]	C	A	5.264e^-4	0.985	UPSTREAM CG43331 & 1 other DOWNSTREAM CG43329 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11575353	3L_11575353_SNP [dm3] 3L_11582253_SNP [dm6]	T	C	5.269e^-4	0.985	UPSTREAM CG33269 DOWNSTREAM CG32086 INTERGENIC
2R	15942664	2R_15942664_SNP [dm3] 2R_20055159_SNP [dm6]	T	C	5.280e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19155700	3R_19155700_SNP [dm3] 3R_23329978_SNP [dm6]	C	A	5.285e^-4	0.985	INTRON pnt
3L	2468550	3L_2468550_SNP [dm3] 3L_2468550_SNP [dm6]	G	A	5.288e^-4	0.985	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	15277945	3R_15277945_SNP [dm3] 3R_19452223_SNP [dm6]	G	A	5.307e^-4	0.985	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	3241340	2L_3241340_SNP [dm3] 2L_3241340_SNP [dm6]	T	A	5.312e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7323969	3L_7323969_SNP [dm3] 3L_7330869_SNP [dm6]	T	A	5.336e^-4	0.985	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307	TF binding site mE1_TFBS_cad
2L	613871	2L_613871_SNP [dm3] 2L_613871_SNP [dm6]	C	T	5.342e^-4	0.985	INTERGENIC
3L	16489026	3L_16489026_SNP [dm3] 3L_16495926_SNP [dm6]	A	T	5.344e^-4	0.985	UPSTREAM CG42514 INTRON CG33158 & 2 others
3L	12125105	3L_12125105_SNP [dm3] 3L_12132005_SNP [dm6]	C	A	5.350e^-4	0.985	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

PC3_Nutri_Score_Low phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results