DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.956e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09997
In_2R_NS	0.09765

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.451	0.0655

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2170 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14109774	2L_14109774_SNP [dm3] 2L_14109774_SNP [dm6]	G	T	9.375e^-8	0.176	SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
2L	14111029	2L_14111029_SNP [dm3] 2L_14111029_SNP [dm6]	G	A	1.483e^-6	0.714	UPSTREAM CG31769 INTERGENIC
2L	6605766	2L_6605766_SNP [dm3] 2L_6605766_SNP [dm6]	T	C	2.701e^-6	0.714	INTERGENIC
X	12603563	X_12603563_SNP [dm3] X_12709530_SNP [dm6]	C	T	2.873e^-6	0.714	DOWNSTREAM CG15725 INTRON Smr
3L	5266323	3L_5266323_SNP [dm3] 3L_5273223_SNP [dm6]	T	A	2.885e^-6	0.714	UTR_5_PRIME shep INTRON shep
3L	2552127	3L_2552127_SNP [dm3] 3L_2552127_SNP [dm6]	A	C	4.300e^-6	0.714	INTRON Spn
2R	15064256	2R_15064256_SNP [dm3] 2R_19176751_SNP [dm6]	T	C	4.586e^-6	0.714	SPLICE_SITE_REGION CG10737 INTRON CG10737
3L	10981177	3L_10981177_SNP [dm3] 3L_10988077_SNP [dm6]	A	G	4.712e^-6	0.714	INTRON klu
3R	12371552	3R_12371552_SNP [dm3] 3R_16545830_SNP [dm6]	G	T	5.296e^-6	0.714	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	12721668	X_12721668_SNP [dm3] X_12827635_SNP [dm6]	T	C	5.814e^-6	0.714	INTRON Pde9
2R	6861309	2R_6861309_SNP [dm3] 2R_10973804_SNP [dm6]	G	A	5.969e^-6	0.714	INTERGENIC
X	20361541	X_20361541_SNP [dm3] X_20490514_SNP [dm6]	T	G	6.773e^-6	0.714	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14110235	2L_14110235_SNP [dm3] 2L_14110235_SNP [dm6]	A	G	7.217e^-6	0.714	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	9084737	3L_9084737_DEL [dm3] 3L_9091637_DEL [dm6]	TTAGGCT	T	7.430e^-6	0.714	INTRON Tequila
X	8928028	X_8928028_SNP [dm3] X_9033995_SNP [dm6]	T	A	7.724e^-6	0.714	INTRON CR43836 & 1 other
X	5228646	X_5228646_SNP [dm3] X_5334613_SNP [dm6]	G	A	8.095e^-6	0.714	DOWNSTREAM CanB INTERGENIC
2L	7953695	2L_7953695_SNP [dm3] 2L_7953695_SNP [dm6]	C	T	8.475e^-6	0.714	INTRON Snoo
2R	15064281	2R_15064281_SNP [dm3] 2R_19176776_SNP [dm6]	T	C	8.900e^-6	0.714	INTRON CG10737
3L	17553473	3L_17553473_SNP [dm3] 3L_17560373_SNP [dm6]	A	T	8.960e^-6	0.714	UTR_3_PRIME Eip74EF
2R	19823898	2R_19823898_SNP [dm3] 2R_23936375_SNP [dm6]	A	G	9.299e^-6	0.714	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
X	12603566	X_12603566_SNP [dm3] X_12709533_SNP [dm6]	G	A	9.307e^-6	0.714	DOWNSTREAM CG15725 INTRON Smr
3L	21772932	3L_21772932_SNP [dm3] 3L_21779832_SNP [dm6]	A	G	9.338e^-6	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17533902	3L_17533902_SNP [dm3] 3L_17540802_SNP [dm6]	T	G	9.398e^-6	0.714	SYNONYMOUS_CODING Nedd4
3L	6000523	3L_6000523_SNP [dm3] 3L_6007423_SNP [dm6]	T	C	9.789e^-6	0.714	INTRON PVRAP
X	16523876	X_16523876_SNP [dm3] X_16629843_SNP [dm6]	G	T	1.056e^-5	0.714	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14114851	2L_14114851_SNP [dm3] 2L_14114851_SNP [dm6]	G	A	1.078e^-5	0.714	INTERGENIC
2L	7161861	2L_7161861_SNP [dm3] 2L_7161861_SNP [dm6]	A	C	1.114e^-5	0.714	INTERGENIC
3R	23988616	3R_23988616_SNP [dm3] 3R_28162894_SNP [dm6]	C	A	1.149e^-5	0.714	INTRON CG34354
2R	3197264	2R_3197264_SNP [dm3] 2R_7309759_SNP [dm6]	G	A	1.174e^-5	0.714	INTERGENIC
2L	6604030	2L_6604030_SNP [dm3] 2L_6604030_SNP [dm6]	A	T	1.192e^-5	0.714	INTERGENIC
2R	13526944	2R_13526944_DEL [dm3] 2R_17639439_DEL [dm6]	TGGTTTATTTACATT...	T	1.212e^-5	0.714	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_Trl
X	8928258	X_8928258_SNP [dm3] X_9034225_SNP [dm6]	G	T	1.311e^-5	0.714	INTRON CR43836 & 1 other
2L	14113502	2L_14113502_SNP [dm3] 2L_14113502_SNP [dm6]	A	C	1.357e^-5	0.714	INTERGENIC
X	9689979	X_9689979_SNP [dm3] X_9795946_SNP [dm6]	T	C	1.373e^-5	0.714	INTRON CG32698
3L	12836828	3L_12836828_SNP [dm3] 3L_12843728_SNP [dm6]	T	G	1.400e^-5	0.714	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	20361348	X_20361348_SNP [dm3] X_20490321_SNP [dm6]	T	G	1.420e^-5	0.714	INTRON RhoGAP19D	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	7953836	2L_7953836_SNP [dm3] 2L_7953836_SNP [dm6]	G	T	1.426e^-5	0.714	INTRON Snoo
2L	7160904	2L_7160904_SNP [dm3] 2L_7160904_SNP [dm6]	A	G	1.459e^-5	0.714	INTERGENIC
2L	14226156	2L_14226156_SNP [dm3] 2L_14226156_SNP [dm6]	A	T	1.486e^-5	0.714	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
3L	14660407	3L_14660407_SNP [dm3] 3L_14667307_SNP [dm6]	A	G	1.584e^-5	0.723	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15064258	2R_15064258_SNP [dm3] 2R_19176753_SNP [dm6]	C	T	1.627e^-5	0.723	INTRON CG10737
2R	9601281	2R_9601281_SNP [dm3] 2R_13713776_SNP [dm6]	A	G	1.642e^-5	0.723	SYNONYMOUS_CODING fas
3L	5289878	3L_5289878_SNP [dm3] 3L_5296778_SNP [dm6]	T	C	1.716e^-5	0.723	INTERGENIC
3L	6769271	3L_6769271_SNP [dm3] 3L_6776171_SNP [dm6]	T	C	1.766e^-5	0.723	INTERGENIC
X	8928277	X_8928277_SNP [dm3] X_9034244_SNP [dm6]	A	G	1.766e^-5	0.723	INTRON CR43836 & 1 other
3L	1454382	3L_1454382_INS [dm3] 3L_1454382_INS [dm6]	T	TT	1.785e^-5	0.723	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	19505733	3R_19505733_SNP [dm3] 3R_23680011_SNP [dm6]	G	A	1.814e^-5	0.723	UPSTREAM eIF-3p66 DOWNSTREAM CG10157 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	17533878	3L_17533878_SNP [dm3] 3L_17540778_SNP [dm6]	T	C	1.988e^-5	0.73	SYNONYMOUS_CODING Nedd4
X	8928257	X_8928257_SNP [dm3] X_9034224_SNP [dm6]	T	A	1.994e^-5	0.73	INTRON CR43836 & 1 other
3R	12859312	3R_12859312_SNP [dm3] 3R_17033590_SNP [dm6]	A	G	2.122e^-5	0.73	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
3L	5245238	3L_5245238_SNP [dm3] 3L_5252138_SNP [dm6]	A	C	2.195e^-5	0.73	INTRON shep
3R	12859328	3R_12859328_SNP [dm3] 3R_17033606_SNP [dm6]	T	A	2.253e^-5	0.73	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
3L	5245239	3L_5245239_SNP [dm3] 3L_5252139_SNP [dm6]	T	A	2.278e^-5	0.73	INTRON shep
2L	14116203	2L_14116203_SNP [dm3] 2L_14116203_SNP [dm6]	A	T	2.356e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14723070	2L_14723070_SNP [dm3] 2L_14723070_SNP [dm6]	T	G	2.364e^-5	0.73	INTERGENIC
X	20361327	X_20361327_SNP [dm3] X_20490300_SNP [dm6]	C	A	2.414e^-5	0.73	INTRON RhoGAP19D	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	14139082	2L_14139082_SNP [dm3] 2L_14139082_SNP [dm6]	T	C	2.448e^-5	0.73	INTRON CG17341
X	4788228	X_4788228_SNP [dm3] X_4894195_SNP [dm6]	C	A	2.458e^-5	0.73	INTRON CG42594
X	9689759	X_9689759_SNP [dm3] X_9795726_SNP [dm6]	T	A	2.510e^-5	0.73	INTRON CG32698
3L	4410480	3L_4410480_SNP [dm3] 3L_4410480_SNP [dm6]	C	T	2.536e^-5	0.73	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	8928049	X_8928049_SNP [dm3] X_9034016_SNP [dm6]	T	G	2.557e^-5	0.73	INTRON CR43836 & 1 other
X	8928195	X_8928195_SNP [dm3] X_9034162_SNP [dm6]	C	T	2.557e^-5	0.73	INTRON CR43836 & 1 other
2L	14101553	2L_14101553_SNP [dm3] 2L_14101553_SNP [dm6]	A	T	2.633e^-5	0.73	INTERGENIC
3L	1673372	3L_1673372_SNP [dm3] 3L_1673372_SNP [dm6]	A	T	2.707e^-5	0.73	UPSTREAM CG13930 INTERGENIC
3L	19497545	3L_19497545_SNP [dm3] 3L_19504445_SNP [dm6]	C	T	2.804e^-5	0.73	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3L	1454379	3L_1454379_SNP [dm3] 3L_1454379_SNP [dm6]	T	A	2.826e^-5	0.73	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
2L	14226191	2L_14226191_DEL [dm3] 2L_14226191_DEL [dm6]	TT	T	2.871e^-5	0.73	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
X	5287638	X_5287638_SNP [dm3] X_5393605_SNP [dm6]	A	T	2.919e^-5	0.73	INTRON SK
3R	13738705	3R_13738705_SNP [dm3] 3R_17912983_SNP [dm6]	G	C	2.959e^-5	0.73	DOWNSTREAM CG43445 INTRON Rim
X	15452793	X_15452793_SNP [dm3] X_15558760_SNP [dm6]	C	A	2.994e^-5	0.73	INTERGENIC
2L	9553752	2L_9553752_SNP [dm3] 2L_9553752_SNP [dm6]	C	A	2.994e^-5	0.73	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9649237	2L_9649237_SNP [dm3] 2L_9649237_SNP [dm6]	T	G	2.997e^-5	0.73	SYNONYMOUS_CODING Apoltp
X	21861771	X_21861771_SNP [dm3] X_22459935_SNP [dm6]	G	A	3.027e^-5	0.73	INTRON CG14619	transposable element FlyBase
X	12174953	X_12174953_SNP [dm3] X_12280920_SNP [dm6]	C	G	3.051e^-5	0.73	INTRON Ten-a
3L	5245142	3L_5245142_SNP [dm3] 3L_5252042_SNP [dm6]	A	T	3.135e^-5	0.73	INTRON shep
2R	15064270	2R_15064270_SNP [dm3] 2R_19176765_SNP [dm6]	T	C	3.148e^-5	0.73	INTRON CG10737
3L	2595088	3L_2595088_SNP [dm3] 3L_2595088_SNP [dm6]	C	T	3.151e^-5	0.73	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
2R	19914154	2R_19914154_SNP [dm3] 2R_24026631_SNP [dm6]	C	A	3.242e^-5	0.73	UPSTREAM PebIII & 1 other DOWNSTREAM Adk2 INTRON PebIII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15210888	3L_15210888_SNP [dm3] 3L_15217788_SNP [dm6]	C	T	3.312e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12975855	2L_12975855_SNP [dm3] 2L_12975855_SNP [dm6]	T	A	3.321e^-5	0.73	INTRON Vha68-2
2L	5890101	2L_5890101_SNP [dm3] 2L_5890101_SNP [dm6]	G	A	3.367e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5890104	2L_5890104_SNP [dm3] 2L_5890104_SNP [dm6]	T	C	3.367e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3477973	2L_3477973_SNP [dm3] 2L_3477973_SNP [dm6]	A	C	3.457e^-5	0.73	UPSTREAM Thor DOWNSTREAM CR43928 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9649280	2L_9649280_SNP [dm3] 2L_9649280_SNP [dm6]	T	C	3.475e^-5	0.73	SYNONYMOUS_CODING Apoltp
2L	7161881	2L_7161881_SNP [dm3] 2L_7161881_SNP [dm6]	C	A	3.520e^-5	0.73	INTERGENIC
3L	11255359	3L_11255359_SNP [dm3] 3L_11262259_SNP [dm6]	T	G	3.538e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7328385	2R_7328385_SNP [dm3] 2R_11440880_SNP [dm6]	C	A	3.551e^-5	0.73	INTRON CG7777
X	20402304	X_20402304_SNP [dm3] X_20531277_SNP [dm6]	T	A	3.568e^-5	0.73	INTERGENIC
2R	18859948	2R_18859948_SNP [dm3] 2R_22972425_SNP [dm6]	A	T	3.579e^-5	0.73	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17366929	X_17366929_SNP [dm3] X_17472896_SNP [dm6]	G	A	3.641e^-5	0.73	INTRON CG43658	TF binding site mE1_TFBS_cad
X	16377217	X_16377217_INS [dm3] X_16483184_INS [dm6]	T	TGTT	3.704e^-5	0.73	INTRON para
X	21832019	X_21832019_SNP [dm3] X_22430184_SNP [dm6]	A	G	3.882e^-5	0.73	INTERGENIC	transposable element FlyBase
2L	5630378	2L_5630378_DEL [dm3] 2L_5630378_DEL [dm6]	CCTTTAAGCATCTGAGT...	A	3.920e^-5	0.73	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	12859346	3R_12859346_SNP [dm3] 3R_17033624_SNP [dm6]	C	T	3.940e^-5	0.73	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
2L	14133695	2L_14133695_SNP [dm3] 2L_14133695_SNP [dm6]	A	T	3.947e^-5	0.73	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11308832	3L_11308832_SNP [dm3] 3L_11315732_SNP [dm6]	T	A	3.952e^-5	0.73	EXON CR44361
3L	1282259	3L_1282259_SNP [dm3] 3L_1282259_SNP [dm6]	G	A	3.960e^-5	0.73	INTRON CG32333
3L	6769300	3L_6769300_SNP [dm3] 3L_6776200_SNP [dm6]	T	C	4.014e^-5	0.73	INTERGENIC
X	16136625	X_16136625_SNP [dm3] X_16242592_SNP [dm6]	T	A	4.056e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7874948	3R_7874948_SNP [dm3] 3R_12049226_SNP [dm6]	G	T	4.086e^-5	0.73	UPSTREAM CG14739 INTERGENIC
2R	19912412	2R_19912412_SNP [dm3] 2R_24024889_SNP [dm6]	G	C	4.106e^-5	0.73	DOWNSTREAM CG11388 INTRON Adk2 EXON CR45350	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20234290	3R_20234290_SNP [dm3] 3R_24408568_SNP [dm6]	C	G	4.129e^-5	0.73	INTRON nAChRalpha1
2L	14124555	2L_14124555_SNP [dm3] 2L_14124555_SNP [dm6]	C	T	4.163e^-5	0.73	INTERGENIC
2L	14101457	2L_14101457_SNP [dm3] 2L_14101457_SNP [dm6]	C	T	4.237e^-5	0.73	INTERGENIC
3R	13738704	3R_13738704_SNP [dm3] 3R_17912982_SNP [dm6]	A	G	4.380e^-5	0.73	DOWNSTREAM CG43445 INTRON Rim
2L	7161715	2L_7161715_INS [dm3] 2L_7161715_INS [dm6]	G	GG	4.393e^-5	0.73	INTERGENIC
X	3211415	X_3211415_SNP [dm3] X_3317382_SNP [dm6]	A	G	4.428e^-5	0.73	UPSTREAM CG10793 INTRON dnc & 1 other
X	3425115	X_3425115_SNP [dm3] X_3531082_SNP [dm6]	T	C	4.442e^-5	0.73	UPSTREAM CG32791 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13738701	3R_13738701_SNP [dm3] 3R_17912979_SNP [dm6]	T	G	4.465e^-5	0.73	DOWNSTREAM CG43445 INTRON Rim
X	15361498	X_15361498_SNP [dm3] X_15467465_SNP [dm6]	G	A	4.471e^-5	0.73	NON_SYNONYMOUS_CODING CG15642 UPSTREAM CG15641 DOWNSTREAM CG6299 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	14361837	2L_14361837_SNP [dm3] 2L_14361837_SNP [dm6]	T	C	4.472e^-5	0.73	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11402002	2L_11402002_SNP [dm3] 2L_11402002_SNP [dm6]	C	T	4.573e^-5	0.73	INTERGENIC	regulatory region REDfly_CRMs
2L	5890114	2L_5890114_SNP [dm3] 2L_5890114_SNP [dm6]	C	T	4.610e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7615201	2L_7615201_SNP [dm3] 2L_7615201_SNP [dm6]	C	T	4.633e^-5	0.73	SYNONYMOUS_CODING CG6739
X	14484514	X_14484514_SNP [dm3] X_14590481_SNP [dm6]	A	C	4.649e^-5	0.73	INTRON CG9413
2L	14127772	2L_14127772_SNP [dm3] 2L_14127772_SNP [dm6]	T	C	4.664e^-5	0.73	INTERGENIC
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	4.675e^-5	0.73	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3R	6794288	3R_6794288_SNP [dm3] 3R_10968566_SNP [dm6]	T	A	4.692e^-5	0.73	INTERGENIC
2L	7479052	2L_7479052_SNP [dm3] 2L_7479052_SNP [dm6]	C	A	4.724e^-5	0.73	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13526990	2R_13526990_SNP [dm3] 2R_17639485_SNP [dm6]	A	G	4.790e^-5	0.73	UPSTREAM CG10936 INTERGENIC
2L	14110445	2L_14110445_SNP [dm3] 2L_14110445_SNP [dm6]	T	C	4.801e^-5	0.73	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
2L	7478481	2L_7478481_SNP [dm3] 2L_7478481_SNP [dm6]	T	G	4.812e^-5	0.73	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1824292	3L_1824292_SNP [dm3] 3L_1824292_SNP [dm6]	T	C	4.847e^-5	0.73	UTR_3_PRIME Cpr62Ba
3L	11062076	3L_11062076_SNP [dm3] 3L_11068976_SNP [dm6]	G	A	4.917e^-5	0.73	UTR_3_PRIME CG45101 & 1 other DOWNSTREAM CG6310
3R	26922304	3R_26922304_SNP [dm3] 3R_31096582_SNP [dm6]	A	G	4.943e^-5	0.73	INTRON CG11317
2L	14087112	2L_14087112_SNP [dm3] 2L_14087112_SNP [dm6]	G	A	5.125e^-5	0.73	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9553683	2L_9553683_SNP [dm3] 2L_9553683_SNP [dm6]	T	C	5.147e^-5	0.73	SYNONYMOUS_CODING jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4371506	2L_4371506_SNP [dm3] 2L_4371506_SNP [dm6]	G	T	5.168e^-5	0.73	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	13992486	3L_13992486_SNP [dm3] 3L_13999386_SNP [dm6]	T	A	5.180e^-5	0.73	UTR_3_PRIME CG8783 UPSTREAM CG17359
X	12404466	X_12404466_SNP [dm3] X_12510433_SNP [dm6]	C	G	5.182e^-5	0.73	INTRON CG2556
2L	14101634	2L_14101634_SNP [dm3] 2L_14101634_SNP [dm6]	T	C	5.197e^-5	0.73	INTERGENIC
2L	9649270	2L_9649270_SNP [dm3] 2L_9649270_SNP [dm6]	G	A	5.208e^-5	0.73	SYNONYMOUS_CODING Apoltp
3R	23947778	3R_23947778_SNP [dm3] 3R_28122056_SNP [dm6]	T	G	5.294e^-5	0.73	INTERGENIC
X	14777445	X_14777445_SNP [dm3] X_14883412_SNP [dm6]	T	G	5.315e^-5	0.73	UPSTREAM CG45065 & 1 other INTRON Flo2
X	12404467	X_12404467_SNP [dm3] X_12510434_SNP [dm6]	T	C	5.402e^-5	0.73	INTRON CG2556
2R	5597307	2R_5597307_SNP [dm3] 2R_9709802_SNP [dm6]	C	T	5.446e^-5	0.73	INTRON CR44292	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	14124447	2L_14124447_SNP [dm3] 2L_14124447_SNP [dm6]	G	A	5.486e^-5	0.73	INTERGENIC
3R	6800022	3R_6800022_SNP [dm3] 3R_10974300_SNP [dm6]	T	C	5.639e^-5	0.73	INTRON CG34114
2L	14109728	2L_14109728_SNP [dm3] 2L_14109728_SNP [dm6]	C	T	5.641e^-5	0.73	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	3727532	3L_3727532_SNP [dm3] 3L_3727532_SNP [dm6]	G	C	5.645e^-5	0.73	INTRON CG32264
2L	8519208	2L_8519208_SNP [dm3] 2L_8519208_SNP [dm6]	A	C	5.652e^-5	0.73	UPSTREAM CG13091 DOWNSTREAM CG13090 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5471598	3R_5471598_SNP [dm3] 3R_9645876_SNP [dm6]	G	T	5.666e^-5	0.73	SYNONYMOUS_CODING Fst INTRON Dh44	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14880494	3L_14880494_SNP [dm3] 3L_14887394_SNP [dm6]	C	A	5.737e^-5	0.73	INTERGENIC
X	16615285	X_16615285_SNP [dm3] X_16721252_SNP [dm6]	C	T	5.809e^-5	0.73	UTR_5_PRIME CG32572 & 1 other
2L	7161020	2L_7161020_SNP [dm3] 2L_7161020_SNP [dm6]	G	A	5.955e^-5	0.73	INTERGENIC
3L	1473125	3L_1473125_DEL [dm3] 3L_1473125_DEL [dm6]	TT	T	5.989e^-5	0.73	UTR_5_PRIME Ptp61F
3L	4776832	3L_4776832_SNP [dm3] 3L_4776832_SNP [dm6]	A	T	5.990e^-5	0.73	INTRON RhoGEF64C
2L	6291531	2L_6291531_SNP [dm3] 2L_6291531_SNP [dm6]	A	G	6.031e^-5	0.73	UTR_3_PRIME Ddr INTRON Ddr	TF binding site mE1_TFBS_cad
X	5430082	X_5430082_SNP [dm3] X_5536049_SNP [dm6]	A	G	6.045e^-5	0.73	INTRON Vsx2
3R	24245721	3R_24245721_SNP [dm3] 3R_28419999_SNP [dm6]	T	A	6.082e^-5	0.73	INTRON beat-VI
2L	12415229	2L_12415229_SNP [dm3] 2L_12415229_SNP [dm6]	T	A	6.084e^-5	0.73	INTRON vir-1
X	9287938	X_9287938_SNP [dm3] X_9393905_SNP [dm6]	C	T	6.107e^-5	0.73	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6563495	3L_6563495_SNP [dm3] 3L_6570395_SNP [dm6]	C	T	6.153e^-5	0.73	INTRON CG18769 & 1 other
X	21861772	X_21861772_SNP [dm3] X_22459936_SNP [dm6]	T	G	6.165e^-5	0.73	INTRON CG14619	transposable element FlyBase
2R	16808259	2R_16808259_SNP [dm3] 2R_20920754_SNP [dm6]	A	G	6.166e^-5	0.73	INTRON Rx	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14122312	2L_14122312_SNP [dm3] 2L_14122312_SNP [dm6]	A	G	6.226e^-5	0.73	INTERGENIC
2L	5562880	2L_5562880_SNP [dm3] 2L_5562880_SNP [dm6]	T	A	6.263e^-5	0.73	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	14101584	2L_14101584_INS [dm3] 2L_14101584_INS [dm6]	T	ATTAA	6.285e^-5	0.73	INTERGENIC
2L	14101593	2L_14101593_DEL [dm3] 2L_14101593_DEL [dm6]	TT	C	6.285e^-5	0.73	INTERGENIC
2L	5890117	2L_5890117_INS [dm3] 2L_5890117_INS [dm6]	A	AA	6.296e^-5	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6574469	3L_6574469_SNP [dm3] 3L_6581369_SNP [dm6]	C	T	6.356e^-5	0.73	INTRON CG18769 & 1 other
2L	14723026	2L_14723026_SNP [dm3] 2L_14723026_SNP [dm6]	C	A	6.411e^-5	0.73	INTERGENIC
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	6.413e^-5	0.73	DOWNSTREAM CanB INTERGENIC
3L	17533985	3L_17533985_DEL [dm3] 3L_17540885_DEL [dm6]	TGC	A	6.425e^-5	0.73	INTRON Nedd4
X	12404475	X_12404475_MNP [dm3] X_12510442_MNP [dm6]	TTT	AAC	6.431e^-5	0.73	INTRON CG2556
2R	7692540	2R_7692540_SNP [dm3] 2R_11805035_SNP [dm6]	T	G	6.572e^-5	0.741	INTRON ths
2R	7328378	2R_7328378_SNP [dm3] 2R_11440873_SNP [dm6]	A	G	6.615e^-5	0.741	INTRON CG7777
2L	7481224	2L_7481224_SNP [dm3] 2L_7481224_SNP [dm6]	G	A	6.689e^-5	0.741	SYNONYMOUS_CODING Ziz
2L	7160968	2L_7160968_SNP [dm3] 2L_7160968_SNP [dm6]	A	G	6.705e^-5	0.741	INTERGENIC
2R	19254003	2R_19254003_SNP [dm3] 2R_23366480_SNP [dm6]	A	G	6.793e^-5	0.741	UPSTREAM Ice1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	20242515	X_20242515_SNP [dm3] X_20371488_SNP [dm6]	G	A	6.840e^-5	0.741	INTERGENIC
X	14482805	X_14482805_SNP [dm3] X_14588772_SNP [dm6]	T	C	6.852e^-5	0.741	INTRON CG9413
X	5223481	X_5223481_DEL [dm3] X_5329448_DEL [dm6]	CA	C	6.947e^-5	0.741	UPSTREAM XRCC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21838904	X_21838904_SNP [dm3] X_22437069_SNP [dm6]	T	A	6.947e^-5	0.741	INTERGENIC
2L	7158322	2L_7158322_SNP [dm3] 2L_7158322_SNP [dm6]	G	A	6.952e^-5	0.741	UPSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7477611	2L_7477611_SNP [dm3] 2L_7477611_SNP [dm6]	C	T	6.989e^-5	0.741	SYNONYMOUS_CODING Ziz DOWNSTREAM CG6441	TF binding site mE1_TFBS_cad
2R	14966104	2R_14966104_SNP [dm3] 2R_19078599_SNP [dm6]	A	G	7.032e^-5	0.741	INTRON 5-HT1A
2R	18623361	2R_18623361_DEL [dm3] 2R_22735856_DEL [dm6]	TT	T	7.033e^-5	0.741	INTRON jbug
2L	11358411	2L_11358411_SNP [dm3] 2L_11358411_SNP [dm6]	A	T	7.219e^-5	0.749	UPSTREAM salr INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21835789	X_21835789_SNP [dm3] X_22433954_SNP [dm6]	G	A	7.268e^-5	0.749	INTERGENIC	transposable element FlyBase
2R	4225068	2R_4225068_SNP [dm3] 2R_8337563_SNP [dm6]	G	A	7.336e^-5	0.749	INTRON pdm3
2L	9836840	2L_9836840_SNP [dm3] 2L_9836840_SNP [dm6]	A	T	7.419e^-5	0.749	INTRON nAChRalpha6
2L	14101618	2L_14101618_SNP [dm3] 2L_14101618_SNP [dm6]	T	A	7.459e^-5	0.749	INTERGENIC
3L	17533992	3L_17533992_SNP [dm3] 3L_17540892_SNP [dm6]	T	C	7.491e^-5	0.749	INTRON Nedd4
2L	14123432	2L_14123432_SNP [dm3] 2L_14123432_SNP [dm6]	G	A	7.560e^-5	0.749	INTERGENIC
2L	14134227	2L_14134227_SNP [dm3] 2L_14134227_SNP [dm6]	G	C	7.623e^-5	0.749	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14031855	2L_14031855_SNP [dm3] 2L_14031855_SNP [dm6]	T	A	7.660e^-5	0.749	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
X	17071853	X_17071853_SNP [dm3] X_17177820_SNP [dm6]	C	T	7.727e^-5	0.749	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	14217478	2L_14217478_SNP [dm3] 2L_14217478_SNP [dm6]	G	A	7.730e^-5	0.749	INTRON Dyrk2
2L	7615282	2L_7615282_SNP [dm3] 2L_7615282_SNP [dm6]	A	G	7.766e^-5	0.749	SYNONYMOUS_CODING CG6739
3L	5282838	3L_5282838_SNP [dm3] 3L_5289738_SNP [dm6]	G	C	7.790e^-5	0.749	INTERGENIC
3R	14309049	3R_14309049_SNP [dm3] 3R_18483327_SNP [dm6]	C	T	7.849e^-5	0.749	INTRON fru
3R	6812843	3R_6812843_SNP [dm3] 3R_10987121_SNP [dm6]	A	T	7.866e^-5	0.749	INTRON CG34114
2L	11398129	2L_11398129_SNP [dm3] 2L_11398129_SNP [dm6]	A	G	7.905e^-5	0.749	INTERGENIC	regulatory region REDfly_CRMs
2R	19455239	2R_19455239_SNP [dm3] 2R_23567716_SNP [dm6]	C	T	7.906e^-5	0.749	UPSTREAM apt INTRON apt
3R	21847633	3R_21847633_SNP [dm3] 3R_26021911_SNP [dm6]	T	A	7.929e^-5	0.749	UTR_5_PRIME E_spl_m3-HLH UPSTREAM CR43644	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18917273	3R_18917273_SNP [dm3] 3R_23091551_SNP [dm6]	G	T	7.979e^-5	0.749	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
X	8928322	X_8928322_SNP [dm3] X_9034289_SNP [dm6]	T	A	7.999e^-5	0.749	INTRON CR43836 & 1 other
2L	7042405	2L_7042405_SNP [dm3] 2L_7042405_SNP [dm6]	A	C	8.014e^-5	0.749	UTR_5_PRIME milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15789961	3R_15789961_SNP [dm3] 3R_19964239_SNP [dm6]	G	A	8.074e^-5	0.749	INTRON Hs6st
2L	7489320	2L_7489320_SNP [dm3] 2L_7489320_SNP [dm6]	G	A	8.336e^-5	0.749	INTRON Ziz
3L	5156871	3L_5156871_SNP [dm3] 3L_5163771_SNP [dm6]	G	T	8.344e^-5	0.749	INTRON shep
2L	1381281	2L_1381281_SNP [dm3] 2L_1381281_SNP [dm6]	T	C	8.351e^-5	0.749	UTR_3_PRIME lea EXON CR44898 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19252234	2R_19252234_SNP [dm3] 2R_23364711_SNP [dm6]	T	G	8.400e^-5	0.749	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1381304	2L_1381304_SNP [dm3] 2L_1381304_SNP [dm6]	A	T	8.428e^-5	0.749	UTR_3_PRIME lea EXON CR44898 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	14110442	2L_14110442_SNP [dm3] 2L_14110442_SNP [dm6]	T	C	8.544e^-5	0.749	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
2L	11463764	2L_11463764_INS [dm3] 2L_11463764_INS [dm6]	T	TCATGT	8.606e^-5	0.749	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14295365	2R_14295365_INS [dm3] 2R_18407860_INS [dm6]	A	AAAA	8.608e^-5	0.749	DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
3L	5282659	3L_5282659_SNP [dm3] 3L_5289559_SNP [dm6]	C	T	8.610e^-5	0.749	INTERGENIC
2L	10170245	2L_10170245_SNP [dm3] 2L_10170245_SNP [dm6]	T	C	8.625e^-5	0.749	INTRON CG44153
X	17625773	X_17625773_SNP [dm3] X_17731740_SNP [dm6]	A	G	8.635e^-5	0.749	INTRON CG42684
X	13467312	X_13467312_SNP [dm3] X_13573279_SNP [dm6]	A	G	8.671e^-5	0.749	INTRON Tango13
3R	19756057	3R_19756057_SNP [dm3] 3R_23930335_SNP [dm6]	A	G	8.692e^-5	0.749	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14453381	2R_14453381_SNP [dm3] 2R_18565876_SNP [dm6]	T	C	8.762e^-5	0.749	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3L	2673574	3L_2673574_SNP [dm3] 3L_2673574_SNP [dm6]	C	G	8.764e^-5	0.749	INTRON Fife
X	12410948	X_12410948_SNP [dm3] X_12516915_SNP [dm6]	G	T	8.805e^-5	0.749	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	2673568	3L_2673568_SNP [dm3] 3L_2673568_SNP [dm6]	C	A	8.856e^-5	0.749	INTRON Fife
X	16050821	X_16050821_SNP [dm3] X_16156788_SNP [dm6]	T	A	8.858e^-5	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19860919	2R_19860919_SNP [dm3] 2R_23973396_SNP [dm6]	T	C	8.870e^-5	0.749	SYNONYMOUS_CODING mr	TF binding site mE1_TFBS_sens
2R	10816594	2R_10816594_SNP [dm3] 2R_14929089_SNP [dm6]	T	A	8.896e^-5	0.749	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3727526	3L_3727526_SNP [dm3] 3L_3727526_SNP [dm6]	C	T	8.922e^-5	0.749	INTRON CG32264
2R	14936325	2R_14936325_SNP [dm3] 2R_19048820_SNP [dm6]	C	G	8.963e^-5	0.749	INTERGENIC
3L	5441905	3L_5441905_SNP [dm3] 3L_5448805_SNP [dm6]	G	C	9.046e^-5	0.749	INTERGENIC
2R	14391734	2R_14391734_SNP [dm3] 2R_18504229_SNP [dm6]	T	C	9.062e^-5	0.749	INTRON GstE11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14110177	2L_14110177_SNP [dm3] 2L_14110177_SNP [dm6]	T	C	9.065e^-5	0.749	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
2R	19909181	2R_19909181_SNP [dm3] 2R_24021658_SNP [dm6]	T	C	9.065e^-5	0.749	UPSTREAM CG11388 INTRON CG3907	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13896198	2R_13896198_SNP [dm3] 2R_18008693_SNP [dm6]	T	C	9.073e^-5	0.749	UPSTREAM dpr13 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12174420	X_12174420_SNP [dm3] X_12280387_SNP [dm6]	C	A	9.139e^-5	0.75	INTRON Ten-a
X	17366932	X_17366932_SNP [dm3] X_17472899_SNP [dm6]	T	C	9.159e^-5	0.75	INTRON CG43658	TF binding site mE1_TFBS_cad
3R	12859387	3R_12859387_SNP [dm3] 3R_17033665_SNP [dm6]	G	T	9.266e^-5	0.755	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
X	21909380	X_21909380_SNP [dm3] X_22507544_SNP [dm6]	G	A	9.334e^-5	0.755	UTR_3_PRIME l_1_G0196
X	13467727	X_13467727_SNP [dm3] X_13573694_SNP [dm6]	A	G	9.351e^-5	0.755	INTRON Tango13
3L	14498016	3L_14498016_SNP [dm3] 3L_14504916_SNP [dm6]	T	A	9.509e^-5	0.765	INTRON bbg
2L	16750980	2L_16750980_SNP [dm3] 2L_16750980_SNP [dm6]	C	T	9.597e^-5	0.767	UTR_3_PRIME CG17912	TF binding site mE1_TFBS_HSA
2L	4371522	2L_4371522_SNP [dm3] 2L_4371522_SNP [dm6]	T	A	9.620e^-5	0.767	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	21837768	X_21837768_SNP [dm3] X_22435933_SNP [dm6]	G	A	9.654e^-5	0.767	INTERGENIC	transposable element FlyBase
3R	13738688	3R_13738688_SNP [dm3] 3R_17912966_SNP [dm6]	T	G	9.760e^-5	0.768	DOWNSTREAM CG43445 INTRON Rim
3L	17051763	3L_17051763_SNP [dm3] 3L_17058663_SNP [dm6]	C	A	9.805e^-5	0.768	DOWNSTREAM Rbp6 & 1 other INTERGENIC
2R	18941580	2R_18941580_SNP [dm3] 2R_23054057_SNP [dm6]	G	C	9.852e^-5	0.768	INTERGENIC
2L	14101608	2L_14101608_SNP [dm3] 2L_14101608_SNP [dm6]	G	C	9.876e^-5	0.768	INTERGENIC
2L	14087096	2L_14087096_SNP [dm3] 2L_14087096_SNP [dm6]	G	A	1.000e^-4	0.768	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19823896	2R_19823896_SNP [dm3] 2R_23936373_SNP [dm6]	C	T	1.009e^-4	0.768	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
X	18841588	X_18841588_DEL [dm3] X_18947555_DEL [dm6]	GCCACATGGCCCTGTAATCA...	G	1.015e^-4	0.768	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	21771994	3L_21771994_SNP [dm3] 3L_21778894_SNP [dm6]	C	G	1.018e^-4	0.768	DOWNSTREAM CG42552 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14295348	2R_14295348_SNP [dm3] 2R_18407843_SNP [dm6]	C	T	1.020e^-4	0.768	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	14295361	2R_14295361_SNP [dm3] 2R_18407856_SNP [dm6]	C	A	1.020e^-4	0.768	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2L	14073295	2L_14073295_SNP [dm3] 2L_14073295_SNP [dm6]	A	G	1.020e^-4	0.768	INTRON nAChRalpha5
2R	9103793	2R_9103793_SNP [dm3] 2R_13216288_SNP [dm6]	G	A	1.026e^-4	0.768	DOWNSTREAM CG4627 INTRON CG4630
2L	16885767	2L_16885767_SNP [dm3] 2L_16885767_SNP [dm6]	A	G	1.032e^-4	0.768	INTRON CG31743 & 1 other
3R	19501421	3R_19501421_SNP [dm3] 3R_23675699_SNP [dm6]	C	T	1.043e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4371368	2L_4371368_SNP [dm3] 2L_4371368_SNP [dm6]	A	G	1.045e^-4	0.768	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	2992275	X_2992275_SNP [dm3] X_3098242_SNP [dm6]	G	A	1.051e^-4	0.768	INTRON kirre	regulatory region REDfly_CRMs
X	14604860	X_14604860_SNP [dm3] X_14710827_SNP [dm6]	A	T	1.051e^-4	0.768	INTRON NetB
3L	2673575	3L_2673575_SNP [dm3] 3L_2673575_SNP [dm6]	A	C	1.052e^-4	0.768	INTRON Fife
X	8737215	X_8737215_SNP [dm3] X_8843182_SNP [dm6]	A	G	1.056e^-4	0.768	INTRON CG12075
3L	2439169	3L_2439169_SNP [dm3] 3L_2439169_SNP [dm6]	T	C	1.057e^-4	0.768	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18917512	3R_18917512_SNP [dm3] 3R_23091790_SNP [dm6]	G	C	1.057e^-4	0.768	START_GAINED CG6726 UTR_5_PRIME CG6726 INTRON CG13830 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14087024	2L_14087024_SNP [dm3] 2L_14087024_SNP [dm6]	C	T	1.059e^-4	0.768	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14295343	2R_14295343_SNP [dm3] 2R_18407838_SNP [dm6]	C	A	1.064e^-4	0.768	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
X	18832249	X_18832249_SNP [dm3] X_18938216_SNP [dm6]	T	C	1.076e^-4	0.768	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	12806609	3L_12806609_SNP [dm3] 3L_12813509_SNP [dm6]	C	T	1.076e^-4	0.768	SYNONYMOUS_CODING CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13738644	3R_13738644_SNP [dm3] 3R_17912922_SNP [dm6]	T	A	1.077e^-4	0.768	DOWNSTREAM CG43445 INTRON Rim
3R	13805434	3R_13805434_SNP [dm3] 3R_17979712_SNP [dm6]	C	G	1.078e^-4	0.768	INTRON cpo
2L	7158440	2L_7158440_SNP [dm3] 2L_7158440_SNP [dm6]	T	A	1.097e^-4	0.779	UPSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8729176	3L_8729176_SNP [dm3] 3L_8736076_SNP [dm6]	G	T	1.110e^-4	0.78	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3R	20234283	3R_20234283_SNP [dm3] 3R_24408561_SNP [dm6]	G	C	1.113e^-4	0.78	INTRON nAChRalpha1
X	14776562	X_14776562_SNP [dm3] X_14882529_SNP [dm6]	A	T	1.115e^-4	0.78	UTR_5_PRIME CG45064 & 1 other INTRON Flo2
3L	18068131	3L_18068131_DEL [dm3] 3L_18075031_DEL [dm6]	ATT	A	1.118e^-4	0.78	EXON CR45391
2L	3966119	2L_3966119_SNP [dm3] 2L_3966119_SNP [dm6]	T	C	1.129e^-4	0.78	INTRON fred
2L	8077153	2L_8077153_SNP [dm3] 2L_8077153_SNP [dm6]	C	G	1.131e^-4	0.78	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20337096	3R_20337096_SNP [dm3] 3R_24511374_SNP [dm6]	A	G	1.131e^-4	0.78	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11219331	3L_11219331_SNP [dm3] 3L_11226231_SNP [dm6]	T	C	1.136e^-4	0.78	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12716730	3L_12716730_SNP [dm3] 3L_12723630_SNP [dm6]	T	C	1.137e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9949069	2L_9949069_SNP [dm3] 2L_9949069_SNP [dm6]	G	A	1.144e^-4	0.781	INTERGENIC
2L	9553409	2L_9553409_SNP [dm3] 2L_9553409_SNP [dm6]	C	T	1.148e^-4	0.781	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	22581133	3R_22581133_SNP [dm3] 3R_26755411_SNP [dm6]	T	A	1.155e^-4	0.781	INTERGENIC
3R	11221720	3R_11221720_SNP [dm3] 3R_15395998_SNP [dm6]	T	C	1.164e^-4	0.781	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
X	2992232	X_2992232_SNP [dm3] X_3098199_SNP [dm6]	C	A	1.166e^-4	0.781	INTRON kirre	regulatory region REDfly_CRMs
X	18817763	X_18817763_SNP [dm3] X_18923730_SNP [dm6]	T	G	1.173e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3727528	3L_3727528_SNP [dm3] 3L_3727528_SNP [dm6]	C	T	1.176e^-4	0.781	INTRON CG32264
X	16318865	X_16318865_SNP [dm3] X_16424832_SNP [dm6]	A	G	1.179e^-4	0.781	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5822080	3R_5822080_SNP [dm3] 3R_9996358_SNP [dm6]	C	A	1.187e^-4	0.781	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18923253	3R_18923253_SNP [dm3] 3R_23097531_SNP [dm6]	G	T	1.189e^-4	0.781	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10907845	3L_10907845_SNP [dm3] 3L_10914745_SNP [dm6]	C	A	1.196e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18942026	2R_18942026_SNP [dm3] 2R_23054503_SNP [dm6]	C	A	1.196e^-4	0.781	UPSTREAM CG44252 INTERGENIC
3R	6796074	3R_6796074_DEL [dm3] 3R_10970352_DEL [dm6]	AAAC	A	1.202e^-4	0.781	DOWNSTREAM CR45561 INTERGENIC
3L	21999673	3L_21999673_SNP [dm3] 3L_22006573_SNP [dm6]	T	C	1.203e^-4	0.781	INTERGENIC
X	15535114	X_15535114_SNP [dm3] X_15641081_SNP [dm6]	T	A	1.204e^-4	0.781	DOWNSTREAM CR44893 INTERGENIC
3L	5045253	3L_5045253_SNP [dm3] 3L_5045253_SNP [dm6]	G	C	1.212e^-4	0.781	INTRON Con
2R	9207102	2R_9207102_SNP [dm3] 2R_13319597_SNP [dm6]	A	T	1.212e^-4	0.781	INTERGENIC
2L	19112178	2L_19112178_SNP [dm3] 2L_19112178_SNP [dm6]	A	G	1.213e^-4	0.781	NON_SYNONYMOUS_CODING amd INTRON amd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6621238	2L_6621238_SNP [dm3] 2L_6621238_SNP [dm6]	A	T	1.220e^-4	0.783	INTRON CG11320
2L	10318673	2L_10318673_SNP [dm3] 2L_10318673_SNP [dm6]	C	G	1.235e^-4	0.783	NON_SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
3L	21770424	3L_21770424_SNP [dm3] 3L_21777324_SNP [dm6]	C	A	1.236e^-4	0.783	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6276524	3L_6276524_SNP [dm3] 3L_6283424_SNP [dm6]	C	A	1.242e^-4	0.783	INTERGENIC
3L	4410777	3L_4410777_SNP [dm3] 3L_4410777_SNP [dm6]	A	G	1.246e^-4	0.783	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	12173798	X_12173798_SNP [dm3] X_12279765_SNP [dm6]	G	A	1.251e^-4	0.783	INTRON Ten-a
X	5602824	X_5602824_SNP [dm3] X_5708791_SNP [dm6]	A	C	1.257e^-4	0.783	UTR_3_PRIME CG33080 DOWNSTREAM CG4096
3L	7034568	3L_7034568_SNP [dm3] 3L_7041468_SNP [dm6]	G	C	1.261e^-4	0.783	INTRON Mp	TF binding site mE1_TFBS_inv
2L	7615294	2L_7615294_SNP [dm3] 2L_7615294_SNP [dm6]	G	T	1.261e^-4	0.783	SYNONYMOUS_CODING CG6739
3R	24245640	3R_24245640_SNP [dm3] 3R_28419918_SNP [dm6]	A	T	1.266e^-4	0.783	INTRON beat-VI
X	18832323	X_18832323_SNP [dm3] X_18938290_SNP [dm6]	T	C	1.272e^-4	0.783	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	20257910	X_20257910_SNP [dm3] X_20386883_SNP [dm6]	T	C	1.277e^-4	0.783	INTERGENIC
2L	1075549	2L_1075549_SNP [dm3] 2L_1075549_SNP [dm6]	G	T	1.277e^-4	0.783	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	1075578	2L_1075578_SNP [dm3] 2L_1075578_SNP [dm6]	G	A	1.277e^-4	0.783	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	8777757	2R_8777757_SNP [dm3] 2R_12890252_SNP [dm6]	C	T	1.279e^-4	0.783	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	7875359	3R_7875359_SNP [dm3] 3R_12049637_SNP [dm6]	T	C	1.292e^-4	0.784	UPSTREAM CG14739 INTERGENIC
3L	6911873	3L_6911873_SNP [dm3] 3L_6918773_SNP [dm6]	T	C	1.298e^-4	0.784	INTERGENIC
3L	21986560	3L_21986560_SNP [dm3] 3L_21993460_SNP [dm6]	C	A	1.304e^-4	0.784	INTERGENIC
X	16136700	X_16136700_SNP [dm3] X_16242667_SNP [dm6]	G	A	1.305e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17533983	3L_17533983_SNP [dm3] 3L_17540883_SNP [dm6]	C	G	1.308e^-4	0.784	INTRON Nedd4
2L	14127771	2L_14127771_SNP [dm3] 2L_14127771_SNP [dm6]	C	A	1.308e^-4	0.784	INTERGENIC
2L	7954428	2L_7954428_SNP [dm3] 2L_7954428_SNP [dm6]	T	G	1.312e^-4	0.784	INTRON Snoo
2R	14966106	2R_14966106_SNP [dm3] 2R_19078601_SNP [dm6]	A	C	1.318e^-4	0.784	INTRON 5-HT1A
2L	15277770	2L_15277770_SNP [dm3] 2L_15277770_SNP [dm6]	A	T	1.318e^-4	0.784	UPSTREAM CR43682 INTERGENIC
X	21861669	X_21861669_SNP [dm3] X_22459833_SNP [dm6]	G	A	1.335e^-4	0.786	INTRON CG14619	transposable element FlyBase
3L	7835891	3L_7835891_SNP [dm3] 3L_7842791_SNP [dm6]	G	C	1.338e^-4	0.786	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7835893	3L_7835893_SNP [dm3] 3L_7842793_SNP [dm6]	G	A	1.338e^-4	0.786	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7835894	3L_7835894_SNP [dm3] 3L_7842794_SNP [dm6]	T	A	1.338e^-4	0.786	INTRON Pdp1	regulatory region REDfly_CRMs
3R	13738850	3R_13738850_SNP [dm3] 3R_17913128_SNP [dm6]	A	G	1.359e^-4	0.791	INTRON Rim
X	14484927	X_14484927_SNP [dm3] X_14590894_SNP [dm6]	T	G	1.367e^-4	0.791	INTRON CG9413
X	15971301	X_15971301_SNP [dm3] X_16077268_SNP [dm6]	G	A	1.375e^-4	0.791	UTR_3_PRIME Tob DOWNSTREAM Tob
X	7989124	X_7989124_SNP [dm3] X_8095091_SNP [dm6]	C	T	1.377e^-4	0.791	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2R	19814348	2R_19814348_SNP [dm3] 2R_23926825_SNP [dm6]	A	T	1.378e^-4	0.791	UTR_3_PRIME Ca-P60A & 1 other DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad
2R	17758504	2R_17758504_DEL [dm3] 2R_21870999_DEL [dm6]	CTTAACATAAGTATTGTTGT...	C	1.385e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	16485978	3L_16485978_SNP [dm3] 3L_16492878_SNP [dm6]	A	T	1.386e^-4	0.791	SYNONYMOUS_CODING CG42514 UTR_3_PRIME CG43373 INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18941959	2R_18941959_SNP [dm3] 2R_23054436_SNP [dm6]	C	T	1.393e^-4	0.791	INTERGENIC
2R	6892504	2R_6892504_SNP [dm3] 2R_11004999_SNP [dm6]	C	T	1.400e^-4	0.791	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	19456538	2R_19456538_SNP [dm3] 2R_23569015_SNP [dm6]	C	A	1.404e^-4	0.791	INTRON apt
2R	670259	2R_670259_SNP [dm3] 2R_4782754_SNP [dm6]	G	T	1.406e^-4	0.791	INTRON CR43281
2R	4045790	2R_4045790_DEL [dm3] 2R_8158285_DEL [dm6]	TTCAC	T	1.408e^-4	0.791	UPSTREAM tRNA:CR30297 & 1 other DOWNSTREAM CR44068 INTERGENIC
3R	12859142	3R_12859142_SNP [dm3] 3R_17033420_SNP [dm6]	A	C	1.414e^-4	0.791	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
3L	1414308	3L_1414308_SNP [dm3] 3L_1414308_SNP [dm6]	G	A	1.416e^-4	0.791	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	14124445	2L_14124445_SNP [dm3] 2L_14124445_SNP [dm6]	T	G	1.424e^-4	0.791	INTERGENIC
2L	7615273	2L_7615273_SNP [dm3] 2L_7615273_SNP [dm6]	T	C	1.424e^-4	0.791	SYNONYMOUS_CODING CG6739
X	8832434	X_8832434_SNP [dm3] X_8938401_SNP [dm6]	A	C	1.426e^-4	0.791	INTRON rdgA
2L	7950983	2L_7950983_SNP [dm3] 2L_7950983_SNP [dm6]	T	C	1.429e^-4	0.791	INTRON Snoo
2L	5742810	2L_5742810_SNP [dm3] 2L_5742810_SNP [dm6]	T	A	1.435e^-4	0.791	INTRON CG11030
3R	18923251	3R_18923251_SNP [dm3] 3R_23097529_SNP [dm6]	G	C	1.435e^-4	0.791	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19077625	X_19077625_SNP [dm3] X_19183592_SNP [dm6]	A	C	1.439e^-4	0.791	SYNONYMOUS_CODING CG33253 UPSTREAM CG33253	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23947681	3R_23947681_SNP [dm3] 3R_28121959_SNP [dm6]	G	A	1.446e^-4	0.791	INTERGENIC
3R	15656881	3R_15656881_SNP [dm3] 3R_19831159_SNP [dm6]	C	A	1.455e^-4	0.791	INTRON bnl
2L	14237785	2L_14237785_SNP [dm3] 2L_14237785_SNP [dm6]	T	C	1.456e^-4	0.791	INTERGENIC
2L	9313451	2L_9313451_SNP [dm3] 2L_9313451_SNP [dm6]	G	C	1.459e^-4	0.791	INTERGENIC
X	17309813	X_17309813_SNP [dm3] X_17415780_SNP [dm6]	T	C	1.464e^-4	0.791	UTR_3_PRIME CG8611 INTRON CG8611
X	12411371	X_12411371_SNP [dm3] X_12517338_SNP [dm6]	T	A	1.467e^-4	0.791	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7482042	2L_7482042_SNP [dm3] 2L_7482042_SNP [dm6]	C	T	1.468e^-4	0.791	SYNONYMOUS_CODING Ziz
3L	17914917	3L_17914917_SNP [dm3] 3L_17921817_SNP [dm6]	G	A	1.469e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25419633	3R_25419633_SNP [dm3] 3R_29593911_SNP [dm6]	G	A	1.493e^-4	0.799	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25323016	3R_25323016_SNP [dm3] 3R_29497294_SNP [dm6]	T	C	1.501e^-4	0.799	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10906795	2L_10906795_SNP [dm3] 2L_10906795_SNP [dm6]	G	T	1.503e^-4	0.799	INTRON CG7309
X	8826524	X_8826524_SNP [dm3] X_8932491_SNP [dm6]	T	G	1.519e^-4	0.799	INTRON rdgA
3L	5950770	3L_5950770_SNP [dm3] 3L_5957670_SNP [dm6]	G	T	1.519e^-4	0.799	INTERGENIC
2L	10459121	2L_10459121_SNP [dm3] 2L_10459121_SNP [dm6]	T	A	1.526e^-4	0.799	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15540589	2L_15540589_SNP [dm3] 2L_15540589_SNP [dm6]	C	T	1.528e^-4	0.799	INTERGENIC
X	17367015	X_17367015_SNP [dm3] X_17472982_SNP [dm6]	G	T	1.532e^-4	0.799	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	18684318	3R_18684318_SNP [dm3] 3R_22858596_SNP [dm6]	G	A	1.535e^-4	0.799	INTERGENIC
X	12177529	X_12177529_SNP [dm3] X_12283496_SNP [dm6]	C	A	1.538e^-4	0.799	INTRON Ten-a
3R	25985023	3R_25985023_SNP [dm3] 3R_30159301_SNP [dm6]	A	G	1.539e^-4	0.799	INTRON CG11498
3L	492813	3L_492813_SNP [dm3] 3L_492813_SNP [dm6]	T	G	1.546e^-4	0.799	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12859493	3R_12859493_SNP [dm3] 3R_17033771_SNP [dm6]	A	C	1.556e^-4	0.799	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	1.556e^-4	0.799	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
X	15969804	X_15969804_SNP [dm3] X_16075771_SNP [dm6]	T	C	1.560e^-4	0.799	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	14524950	3L_14524950_SNP [dm3] 3L_14531850_SNP [dm6]	C	A	1.564e^-4	0.799	INTRON bbg
3R	13738724	3R_13738724_SNP [dm3] 3R_17913002_SNP [dm6]	A	G	1.569e^-4	0.799	DOWNSTREAM CG43445 INTRON Rim
2L	10132747	2L_10132747_SNP [dm3] 2L_10132747_SNP [dm6]	T	A	1.571e^-4	0.799	INTRON CG44153
3R	25984057	3R_25984057_SNP [dm3] 3R_30158335_SNP [dm6]	C	A	1.573e^-4	0.799	INTRON CG11498	TF binding site BDTNP1_TFBS_twi
2L	9948927	2L_9948927_SNP [dm3] 2L_9948927_SNP [dm6]	C	A	1.594e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_inv
X	14711652	X_14711652_INS [dm3] X_14817619_INS [dm6]	G	TA	1.595e^-4	0.799	INTRON rut
X	12411135	X_12411135_SNP [dm3] X_12517102_SNP [dm6]	A	C	1.600e^-4	0.799	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	8688726	3L_8688726_SNP [dm3] 3L_8695626_SNP [dm6]	T	C	1.601e^-4	0.799	INTERGENIC
X	17625756	X_17625756_SNP [dm3] X_17731723_SNP [dm6]	C	T	1.605e^-4	0.799	INTRON CG42684
2R	13625242	2R_13625242_SNP [dm3] 2R_17737737_SNP [dm6]	G	A	1.607e^-4	0.799	UTR_3_PRIME CG6401 UPSTREAM CG6406 DOWNSTREAM CG6401
3R	15657960	3R_15657960_SNP [dm3] 3R_19832238_SNP [dm6]	C	A	1.607e^-4	0.799	INTRON bnl
2L	14723282	2L_14723282_SNP [dm3] 2L_14723282_SNP [dm6]	A	C	1.608e^-4	0.799	INTERGENIC
3R	20337098	3R_20337098_SNP [dm3] 3R_24511376_SNP [dm6]	T	A	1.608e^-4	0.799	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10461413	2L_10461413_SNP [dm3] 2L_10461413_SNP [dm6]	T	C	1.613e^-4	0.799	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
2L	7954041	2L_7954041_SNP [dm3] 2L_7954041_SNP [dm6]	A	G	1.614e^-4	0.799	INTRON Snoo
X	12404479	X_12404479_SNP [dm3] X_12510446_SNP [dm6]	T	C	1.616e^-4	0.799	INTRON CG2556
X	16290996	X_16290996_SNP [dm3] X_16396963_SNP [dm6]	G	C	1.620e^-4	0.799	NON_SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2R	14295358	2R_14295358_SNP [dm3] 2R_18407853_SNP [dm6]	A	T	1.624e^-4	0.799	START_GAINED GstE8 UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
X	12174952	X_12174952_SNP [dm3] X_12280919_SNP [dm6]	G	C	1.633e^-4	0.8	INTRON Ten-a
X	14482801	X_14482801_DEL [dm3] X_14588768_DEL [dm6]	AA	A	1.635e^-4	0.8	INTRON CG9413
3R	22399453	3R_22399453_SNP [dm3] 3R_26573731_SNP [dm6]	C	G	1.648e^-4	0.803	NON_SYNONYMOUS_CODING scrib INTRON scrib
2R	19253865	2R_19253865_SNP [dm3] 2R_23366342_SNP [dm6]	T	G	1.659e^-4	0.803	UTR_5_PRIME vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12881131	3R_12881131_INS [dm3] 3R_17055409_INS [dm6]	A	ATT	1.663e^-4	0.803	INTRON Dad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	16996757	3L_16996757_SNP [dm3] 3L_17003657_SNP [dm6]	G	A	1.673e^-4	0.803	INTRON CG3764
2R	4077344	2R_4077344_SNP [dm3] 2R_8189839_SNP [dm6]	C	T	1.678e^-4	0.803	INTRON LRP1
X	13467738	X_13467738_SNP [dm3] X_13573705_SNP [dm6]	A	T	1.683e^-4	0.803	INTRON Tango13
3R	11221716	3R_11221716_SNP [dm3] 3R_15395994_SNP [dm6]	A	T	1.696e^-4	0.803	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
3L	17437247	3L_17437247_SNP [dm3] 3L_17444147_SNP [dm6]	A	G	1.696e^-4	0.803	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9553496	2L_9553496_SNP [dm3] 2L_9553496_SNP [dm6]	C	T	1.705e^-4	0.803	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14237659	3R_14237659_SNP [dm3] 3R_18411937_SNP [dm6]	T	G	1.708e^-4	0.803	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26010502	3R_26010502_INS [dm3] 3R_30184780_INS [dm6]	T	TAT	1.728e^-4	0.803	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
X	8894216	X_8894216_SNP [dm3] X_9000183_SNP [dm6]	A	C	1.729e^-4	0.803	SYNONYMOUS_CODING rdgA INTRON rdgA & 1 other
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	1.732e^-4	0.803	DOWNSTREAM TkR86C INTERGENIC
X	5769622	X_5769622_SNP [dm3] X_5875589_SNP [dm6]	C	T	1.736e^-4	0.803	SYNONYMOUS_CODING mof	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4706946	3R_4706946_SNP [dm3] 3R_8881224_SNP [dm6]	A	C	1.744e^-4	0.803	INTRON pyd
3R	25984058	3R_25984058_SNP [dm3] 3R_30158336_SNP [dm6]	T	A	1.755e^-4	0.803	INTRON CG11498	TF binding site BDTNP1_TFBS_twi
2R	11740361	2R_11740361_DEL [dm3] 2R_15852856_DEL [dm6]	ATCA	A	1.756e^-4	0.803	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10832672	2L_10832672_SNP [dm3] 2L_10832672_SNP [dm6]	T	C	1.770e^-4	0.803	INTRON Nos
3R	13738775	3R_13738775_SNP [dm3] 3R_17913053_SNP [dm6]	T	G	1.782e^-4	0.803	INTRON Rim
3L	18312375	3L_18312375_SNP [dm3] 3L_18319275_SNP [dm6]	G	T	1.792e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18063493	X_18063493_SNP [dm3] X_18169460_SNP [dm6]	C	A	1.793e^-4	0.803	INTRON Frq1
3R	14130612	3R_14130612_SNP [dm3] 3R_18304890_SNP [dm6]	G	C	1.804e^-4	0.803	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12409843	X_12409843_SNP [dm3] X_12515810_SNP [dm6]	T	G	1.805e^-4	0.803	DOWNSTREAM CG43921 INTRON CG2556
2L	3672196	2L_3672196_SNP [dm3] 2L_3672196_SNP [dm6]	G	A	1.812e^-4	0.803	INTRON CG34340
3L	9314975	3L_9314975_SNP [dm3] 3L_9321875_SNP [dm6]	T	C	1.819e^-4	0.803	INTERGENIC
3R	19340319	3R_19340319_SNP [dm3] 3R_23514597_SNP [dm6]	C	A	1.824e^-4	0.803	SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7989658	X_7989658_SNP [dm3] X_8095625_SNP [dm6]	T	A	1.827e^-4	0.803	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2R	907417	2R_907417_SNP [dm3] 2R_5019912_SNP [dm6]	A	T	1.836e^-4	0.803	INTRON Ir41a	transposable element FlyBase
3L	492808	3L_492808_SNP [dm3] 3L_492808_SNP [dm6]	A	G	1.858e^-4	0.803	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14226132	2L_14226132_SNP [dm3] 2L_14226132_SNP [dm6]	T	A	1.874e^-4	0.803	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
3R	25349039	3R_25349039_DEL [dm3] 3R_29523317_DEL [dm6]	TT	T	1.876e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19911251	2R_19911251_SNP [dm3] 2R_24023728_SNP [dm6]	C	T	1.879e^-4	0.803	SYNONYMOUS_CODING CG11388 UPSTREAM Adk2 DOWNSTREAM CR45350	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20322829	X_20322829_SNP [dm3] X_20451802_SNP [dm6]	C	T	1.888e^-4	0.803	INTRON CG32506
3R	12858973	3R_12858973_SNP [dm3] 3R_17033251_SNP [dm6]	T	C	1.888e^-4	0.803	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
3L	16956903	3L_16956903_SNP [dm3] 3L_16963803_SNP [dm6]	G	T	1.894e^-4	0.803	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9689792	X_9689792_SNP [dm3] X_9795759_SNP [dm6]	A	G	1.895e^-4	0.803	INTRON CG32698
2R	18360008	2R_18360008_SNP [dm3] 2R_22472503_SNP [dm6]	C	T	1.903e^-4	0.803	UTR_3_PRIME CG10384 DOWNSTREAM CG10384 & 1 other
2L	14129757	2L_14129757_SNP [dm3] 2L_14129757_SNP [dm6]	G	A	1.908e^-4	0.803	INTERGENIC
3R	23987023	3R_23987023_SNP [dm3] 3R_28161301_SNP [dm6]	C	G	1.909e^-4	0.803	INTRON CG34354
3L	10944054	3L_10944054_DEL [dm3] 3L_10950954_DEL [dm6]	AA	A	1.909e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5957715	3L_5957715_SNP [dm3] 3L_5964615_SNP [dm6]	A	G	1.924e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10461407	2L_10461407_SNP [dm3] 2L_10461407_SNP [dm6]	C	A	1.932e^-4	0.803	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3L	4410384	3L_4410384_SNP [dm3] 3L_4410384_SNP [dm6]	A	G	1.932e^-4	0.803	INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	20361294	X_20361294_DEL [dm3] X_20490267_DEL [dm6]	TT	T	1.944e^-4	0.803	INTRON RhoGAP19D	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	19911614	2R_19911614_SNP [dm3] 2R_24024091_SNP [dm6]	G	A	1.945e^-4	0.803	UPSTREAM Adk2 DOWNSTREAM CR45350 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5441884	3L_5441884_SNP [dm3] 3L_5448784_SNP [dm6]	C	A	1.946e^-4	0.803	INTERGENIC
2L	10832977	2L_10832977_SNP [dm3] 2L_10832977_SNP [dm6]	G	T	1.954e^-4	0.803	INTRON Nos
2L	14125155	2L_14125155_SNP [dm3] 2L_14125155_SNP [dm6]	G	A	1.954e^-4	0.803	INTERGENIC
2L	14722985	2L_14722985_SNP [dm3] 2L_14722985_SNP [dm6]	C	T	1.954e^-4	0.803	INTERGENIC
2L	5966446	2L_5966446_SNP [dm3] 2L_5966446_SNP [dm6]	G	T	1.957e^-4	0.803	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2783220	3L_2783220_SNP [dm3] 3L_2783220_SNP [dm6]	A	G	1.959e^-4	0.803	NON_SYNONYMOUS_CODING pgant6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15966089	X_15966089_SNP [dm3] X_16072056_SNP [dm6]	C	T	1.967e^-4	0.803	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
X	9287927	X_9287927_SNP [dm3] X_9393894_SNP [dm6]	T	C	1.969e^-4	0.803	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16761998	X_16761998_SNP [dm3] X_16867965_SNP [dm6]	T	A	1.970e^-4	0.803	INTRON CG13003
2L	7614463	2L_7614463_SNP [dm3] 2L_7614463_SNP [dm6]	C	T	1.984e^-4	0.803	SYNONYMOUS_CODING CG6739
2R	15571819	2R_15571819_SNP [dm3] 2R_19684314_SNP [dm6]	T	C	1.985e^-4	0.803	UPSTREAM CR44505 INTERGENIC
X	12411706	X_12411706_SNP [dm3] X_12517673_SNP [dm6]	A	G	1.985e^-4	0.803	UTR_3_PRIME CG43921
3R	17465924	3R_17465924_SNP [dm3] 3R_21640202_SNP [dm6]	T	A	1.990e^-4	0.803	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	10840320	2R_10840320_SNP [dm3] 2R_14952815_SNP [dm6]	C	T	1.992e^-4	0.803	INTRON aPKC
3L	16477943	3L_16477943_DEL [dm3] 3L_16484843_DEL [dm6]	TAC	T	1.998e^-4	0.803	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2552107	3L_2552107_SNP [dm3] 3L_2552107_SNP [dm6]	G	A	1.998e^-4	0.803	INTRON Spn
3L	12836844	3L_12836844_SNP [dm3] 3L_12843744_SNP [dm6]	A	G	2.002e^-4	0.803	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	2725514	2L_2725514_SNP [dm3] 2L_2725514_SNP [dm6]	G	A	2.006e^-4	0.803	UPSTREAM CG31689 INTERGENIC
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	2.009e^-4	0.803	DOWNSTREAM CanB INTERGENIC
2L	16401263	2L_16401263_SNP [dm3] 2L_16401263_SNP [dm6]	A	G	2.013e^-4	0.803	INTRON CG5888
X	12184484	X_12184484_SNP [dm3] X_12290451_SNP [dm6]	C	T	2.015e^-4	0.803	INTRON Ten-a
2R	19131615	2R_19131615_SNP [dm3] 2R_23244092_SNP [dm6]	A	G	2.017e^-4	0.803	UTR_3_PRIME yip3
X	18817759	X_18817759_SNP [dm3] X_18923726_SNP [dm6]	T	A	2.023e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10658910	2L_10658910_SNP [dm3] 2L_10658910_SNP [dm6]	T	C	2.023e^-4	0.803	DOWNSTREAM CR45692 & 1 other INTERGENIC
2L	14114908	2L_14114908_SNP [dm3] 2L_14114908_SNP [dm6]	C	T	2.025e^-4	0.803	INTERGENIC
X	6990376	X_6990376_SNP [dm3] X_7096343_SNP [dm6]	T	G	2.027e^-4	0.803	INTRON Sxl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6990403	X_6990403_SNP [dm3] X_7096370_SNP [dm6]	C	A	2.027e^-4	0.803	INTRON Sxl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6990477	X_6990477_SNP [dm3] X_7096444_SNP [dm6]	A	G	2.027e^-4	0.803	INTRON Sxl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6999220	X_6999220_SNP [dm3] X_7105187_SNP [dm6]	T	C	2.027e^-4	0.803	NON_SYNONYMOUS_CODING CG8300 UPSTREAM CG4617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24358236	3R_24358236_SNP [dm3] 3R_28532514_SNP [dm6]	G	T	2.045e^-4	0.803	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	12859448	3R_12859448_INS [dm3] 3R_17033726_INS [dm6]	T	TGTGTAAATTAATGAATG...	2.046e^-4	0.803	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
3R	13653065	3R_13653065_DEL [dm3] 3R_17827343_DEL [dm6]	ACTGA	A	2.056e^-4	0.803	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6797736	2L_6797736_SNP [dm3] 2L_6797736_SNP [dm6]	T	G	2.059e^-4	0.803	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7959025	2L_7959025_SNP [dm3] 2L_7959025_SNP [dm6]	T	C	2.065e^-4	0.803	INTRON Snoo
X	8928211	X_8928211_SNP [dm3] X_9034178_SNP [dm6]	G	A	2.080e^-4	0.803	INTRON CR43836 & 1 other
2R	10256520	2R_10256520_SNP [dm3] 2R_14369015_SNP [dm6]	A	T	2.082e^-4	0.803	NON_SYNONYMOUS_CODING CG34443 UPSTREAM CG34444
2R	10367971	2R_10367971_DEL [dm3] 2R_14480466_DEL [dm6]	AA	A	2.083e^-4	0.803	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14826164	2R_14826164_SNP [dm3] 2R_18938659_SNP [dm6]	A	C	2.090e^-4	0.803	INTRON sano
3R	17417032	3R_17417032_SNP [dm3] 3R_21591310_SNP [dm6]	C	T	2.091e^-4	0.803	INTRON InR	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	12185496	X_12185496_SNP [dm3] X_12291463_SNP [dm6]	G	A	2.098e^-4	0.803	INTRON Ten-a
2L	6807583	2L_6807583_SNP [dm3] 2L_6807583_SNP [dm6]	T	C	2.100e^-4	0.803	INTERGENIC
X	8529167	X_8529167_SNP [dm3] X_8635134_SNP [dm6]	G	A	2.106e^-4	0.803	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	13467712	X_13467712_SNP [dm3] X_13573679_SNP [dm6]	A	G	2.113e^-4	0.803	INTRON Tango13
X	21861149	X_21861149_DEL [dm3] X_22459313_DEL [dm6]	CCTACTTAGTC...	C	2.115e^-4	0.803	INTRON CG14619	transposable element FlyBase
2R	758867	2R_758867_SNP [dm3] 2R_4871362_SNP [dm6]	A	G	2.115e^-4	0.803	INTERGENIC
3L	4969765	3L_4969765_SNP [dm3] 3L_4969765_SNP [dm6]	A	T	2.118e^-4	0.803	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19813257	2R_19813257_SNP [dm3] 2R_23925734_SNP [dm6]	G	A	2.131e^-4	0.803	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13290788	2L_13290788_SNP [dm3] 2L_13290788_SNP [dm6]	G	A	2.137e^-4	0.803	SYNONYMOUS_CODING CG31729 UPSTREAM CG31729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2320369	X_2320369_SNP [dm3] X_2426336_SNP [dm6]	T	G	2.141e^-4	0.803	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC	transposable element FlyBase
2L	14063846	2L_14063846_SNP [dm3] 2L_14063846_SNP [dm6]	T	A	2.147e^-4	0.803	INTRON nAChRalpha5
2L	6741322	2L_6741322_SNP [dm3] 2L_6741322_SNP [dm6]	T	C	2.150e^-4	0.803	INTERGENIC
3L	18841148	3L_18841148_SNP [dm3] 3L_18848048_SNP [dm6]	C	T	2.155e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_bab1
X	15669805	X_15669805_SNP [dm3] X_15775772_SNP [dm6]	G	A	2.159e^-4	0.803	SYNONYMOUS_CODING CG43672
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	2.160e^-4	0.803	UPSTREAM Mlp60A INTERGENIC
2L	14723114	2L_14723114_SNP [dm3] 2L_14723114_SNP [dm6]	C	T	2.169e^-4	0.803	INTERGENIC
X	12603552	X_12603552_SNP [dm3] X_12709519_SNP [dm6]	G	T	2.172e^-4	0.803	DOWNSTREAM CG15725 INTRON Smr
3L	19177967	3L_19177967_SNP [dm3] 3L_19184867_SNP [dm6]	C	A	2.178e^-4	0.803	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16599868	2L_16599868_SNP [dm3] 2L_16599868_SNP [dm6]	A	G	2.182e^-4	0.803	INTRON CG42389
X	14889693	X_14889693_SNP [dm3] X_14995660_SNP [dm6]	A	G	2.182e^-4	0.803	INTRON eag
X	9638767	X_9638767_SNP [dm3] X_9744734_SNP [dm6]	C	A	2.187e^-4	0.803	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	12410950	X_12410950_SNP [dm3] X_12516917_SNP [dm6]	T	A	2.188e^-4	0.803	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2L	14469561	2L_14469561_SNP [dm3] 2L_14469561_SNP [dm6]	A	C	2.189e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10097780	2R_10097780_SNP [dm3] 2R_14210275_SNP [dm6]	C	G	2.192e^-4	0.803	INTRON Sox15	regulatory region REDfly_CRMs
2L	14086812	2L_14086812_SNP [dm3] 2L_14086812_SNP [dm6]	C	A	2.195e^-4	0.803	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi
2R	19772157	2R_19772157_SNP [dm3] 2R_23884634_SNP [dm6]	T	A	2.197e^-4	0.803	UPSTREAM PHDP INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9766029	3L_9766029_SNP [dm3] 3L_9772929_SNP [dm6]	A	G	2.198e^-4	0.803	INTRON CG8177
2L	7477674	2L_7477674_SNP [dm3] 2L_7477674_SNP [dm6]	C	T	2.207e^-4	0.803	SYNONYMOUS_CODING Ziz DOWNSTREAM CG6441	TF binding site mE1_TFBS_cad
X	6992289	X_6992289_SNP [dm3] X_7098256_SNP [dm6]	A	C	2.208e^-4	0.803	UPSTREAM Sxl DOWNSTREAM CG4615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14458441	2R_14458441_SNP [dm3] 2R_18570936_SNP [dm6]	G	A	2.209e^-4	0.803	INTRON GEFmeso
X	18832306	X_18832306_DEL [dm3] X_18938273_DEL [dm6]	AATA	A	2.212e^-4	0.803	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	7990085	X_7990085_INS [dm3] X_8096052_INS [dm6]	T	TTCCTT	2.214e^-4	0.803	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
3L	7835883	3L_7835883_SNP [dm3] 3L_7842783_SNP [dm6]	T	G	2.215e^-4	0.803	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7835885	3L_7835885_SNP [dm3] 3L_7842785_SNP [dm6]	C	A	2.215e^-4	0.803	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7835889	3L_7835889_SNP [dm3] 3L_7842789_SNP [dm6]	C	T	2.215e^-4	0.803	INTRON Pdp1	regulatory region REDfly_CRMs
2R	15228679	2R_15228679_SNP [dm3] 2R_19341174_SNP [dm6]	T	C	2.218e^-4	0.803	UPSTREAM CG9975 INTRON Rgk1
4	339227	4_339227_DEL [dm3] 4_318601_DEL [dm6]	AA	A	2.225e^-4	0.803	INTRON CG32850	transposable element FlyBase
3L	7592913	3L_7592913_SNP [dm3] 3L_7599813_SNP [dm6]	C	T	2.229e^-4	0.803	INTRON CG33275
3L	17915006	3L_17915006_SNP [dm3] 3L_17921906_SNP [dm6]	A	C	2.231e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6848413	2R_6848413_SNP [dm3] 2R_10960908_SNP [dm6]	G	C	2.232e^-4	0.803	INTERGENIC
3R	19505755	3R_19505755_SNP [dm3] 3R_23680033_SNP [dm6]	T	G	2.234e^-4	0.803	UPSTREAM eIF-3p66 DOWNSTREAM CG10157 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	14173584	3R_14173584_SNP [dm3] 3R_18347862_SNP [dm6]	A	T	2.236e^-4	0.803	INTRON CG15803
X	21203843	X_21203843_SNP [dm3] X_21332816_SNP [dm6]	G	A	2.236e^-4	0.803	DOWNSTREAM tty INTRON tty
2R	16620410	2R_16620410_SNP [dm3] 2R_20732905_SNP [dm6]	T	A	2.238e^-4	0.803	INTRON dpr
2R	10103293	2R_10103293_SNP [dm3] 2R_14215788_SNP [dm6]	G	T	2.244e^-4	0.803	DOWNSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16755576	2L_16755576_INS [dm3] 2L_16755576_INS [dm6]	T	TT	2.248e^-4	0.803	INTRON yellow-b
X	8928274	X_8928274_SNP [dm3] X_9034241_SNP [dm6]	G	A	2.248e^-4	0.803	INTRON CR43836 & 1 other
X	20452179	X_20452179_DEL [dm3] X_20581152_DEL [dm6]	TTTCGGC	T	2.259e^-4	0.803	INTERGENIC
3R	26922126	3R_26922126_SNP [dm3] 3R_31096404_SNP [dm6]	C	T	2.273e^-4	0.803	INTRON CG11317
X	15250034	X_15250034_SNP [dm3] X_15356001_SNP [dm6]	A	T	2.273e^-4	0.803	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3436285	3L_3436285_SNP [dm3] 3L_3436285_SNP [dm6]	T	A	2.273e^-4	0.803	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
3R	10574277	3R_10574277_SNP [dm3] 3R_14748555_SNP [dm6]	C	A	2.276e^-4	0.803	UPSTREAM jvl INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	2.280e^-4	0.803	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4969604	3L_4969604_SNP [dm3] 3L_4969604_SNP [dm6]	T	A	2.283e^-4	0.803	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6902193	3R_6902193_SNP [dm3] 3R_11076471_SNP [dm6]	A	G	2.290e^-4	0.803	INTERGENIC
3L	10144553	3L_10144553_SNP [dm3] 3L_10151453_SNP [dm6]	G	T	2.293e^-4	0.803	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	18917168	3R_18917168_DEL [dm3] 3R_23091446_DEL [dm6]	TTTTT	T	2.308e^-4	0.803	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	14541882	2L_14541882_SNP [dm3] 2L_14541882_SNP [dm6]	C	T	2.310e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12859812	3R_12859812_SNP [dm3] 3R_17034090_SNP [dm6]	A	T	2.314e^-4	0.803	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2R	10847234	2R_10847234_SNP [dm3] 2R_14959729_SNP [dm6]	C	A	2.315e^-4	0.803	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6356666	2L_6356666_SNP [dm3] 2L_6356666_SNP [dm6]	C	T	2.320e^-4	0.803	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	11766600	X_11766600_SNP [dm3] X_11872567_SNP [dm6]	G	A	2.321e^-4	0.803	START_GAINED CG11802 UTR_5_PRIME CG11802 UPSTREAM CG15739	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3678772	3L_3678772_SNP [dm3] 3L_3678772_SNP [dm6]	A	G	2.324e^-4	0.803	INTERGENIC
2R	7692580	2R_7692580_SNP [dm3] 2R_11805075_SNP [dm6]	C	T	2.325e^-4	0.803	INTRON ths
2L	14469401	2L_14469401_INS [dm3] 2L_14469401_INS [dm6]	T	TGCCT	2.327e^-4	0.803	INTERGENIC
X	20840098	X_20840098_SNP [dm3] X_20969071_SNP [dm6]	C	T	2.344e^-4	0.803	INTERGENIC
3R	23987194	3R_23987194_SNP [dm3] 3R_28161472_SNP [dm6]	T	C	2.344e^-4	0.803	INTRON CG34354
X	12175129	X_12175129_INS [dm3] X_12281096_INS [dm6]	A	ATTGAGTGCCA...	2.344e^-4	0.803	INTRON Ten-a
3R	22580630	3R_22580630_SNP [dm3] 3R_26754908_SNP [dm6]	C	T	2.346e^-4	0.803	INTERGENIC
3L	3670900	3L_3670900_SNP [dm3] 3L_3670900_SNP [dm6]	A	G	2.348e^-4	0.803	INTERGENIC
X	12174421	X_12174421_DEL [dm3] X_12280388_DEL [dm6]	ATTTGCGTATGAGGCACA...	A	2.354e^-4	0.803	INTRON Ten-a
X	12239640	X_12239640_SNP [dm3] X_12345607_SNP [dm6]	A	G	2.359e^-4	0.803	INTERGENIC
2L	10462544	2L_10462544_SNP [dm3] 2L_10462544_SNP [dm6]	G	C	2.360e^-4	0.803	DOWNSTREAM RluA-1 & 1 other INTERGENIC
3L	7034702	3L_7034702_SNP [dm3] 3L_7041602_SNP [dm6]	G	T	2.366e^-4	0.803	INTRON Mp	TF binding site mE1_TFBS_inv
2L	7161839	2L_7161839_SNP [dm3] 2L_7161839_SNP [dm6]	A	T	2.376e^-4	0.803	INTERGENIC
2R	16033669	2R_16033669_SNP [dm3] 2R_20146164_SNP [dm6]	G	A	2.379e^-4	0.803	INTRON CG11041
3L	3678776	3L_3678776_SNP [dm3] 3L_3678776_SNP [dm6]	C	G	2.380e^-4	0.803	INTERGENIC
X	12318022	X_12318022_SNP [dm3] X_12423989_SNP [dm6]	G	A	2.384e^-4	0.803	INTERGENIC
2R	4637431	2R_4637431_SNP [dm3] 2R_8749926_SNP [dm6]	C	T	2.386e^-4	0.803	INTRON CG8740
2R	14611743	2R_14611743_INS [dm3] 2R_18724238_INS [dm6]	T	TAGTGA	2.388e^-4	0.803	INTRON Hs3st-A
3L	6769450	3L_6769450_SNP [dm3] 3L_6776350_SNP [dm6]	A	G	2.389e^-4	0.803	INTERGENIC
3L	5648677	3L_5648677_SNP [dm3] 3L_5655577_SNP [dm6]	A	G	2.389e^-4	0.803	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7873315	3R_7873315_SNP [dm3] 3R_12047593_SNP [dm6]	G	A	2.389e^-4	0.803	DOWNSTREAM CG14739 INTERGENIC
3R	18506956	3R_18506956_SNP [dm3] 3R_22681234_SNP [dm6]	G	A	2.389e^-4	0.803	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17813965	2R_17813965_SNP [dm3] 2R_21926460_SNP [dm6]	T	C	2.398e^-4	0.803	INTRON Fili
3R	25419621	3R_25419621_SNP [dm3] 3R_29593899_SNP [dm6]	T	C	2.403e^-4	0.803	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15488973	2R_15488973_SNP [dm3] 2R_19601468_SNP [dm6]	G	C	2.415e^-4	0.803	INTRON sm
3L	10886032	3L_10886032_SNP [dm3] 3L_10892932_SNP [dm6]	T	A	2.417e^-4	0.803	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	20827337	X_20827337_SNP [dm3] X_20956310_SNP [dm6]	A	T	2.430e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18880017	2R_18880017_SNP [dm3] 2R_22992494_SNP [dm6]	G	C	2.433e^-4	0.803	INTRON twi
2L	7491544	2L_7491544_SNP [dm3] 2L_7491544_SNP [dm6]	G	A	2.440e^-4	0.803	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10614986	3L_10614986_SNP [dm3] 3L_10621886_SNP [dm6]	A	T	2.445e^-4	0.803	INTERGENIC
3R	15653288	3R_15653288_SNP [dm3] 3R_19827566_SNP [dm6]	G	A	2.446e^-4	0.803	INTRON bnl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19348235	3R_19348235_SNP [dm3] 3R_23522513_SNP [dm6]	T	C	2.448e^-4	0.803	UTR_3_PRIME CG10175 UPSTREAM CG10177 DOWNSTREAM CG10175	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3L	3907704	3L_3907704_SNP [dm3] 3L_3907704_SNP [dm6]	C	A	2.452e^-4	0.803	SYNONYMOUS_CODING ida DOWNSTREAM mge
X	7992274	X_7992274_SNP [dm3] X_8098241_SNP [dm6]	G	A	2.452e^-4	0.803	SYNONYMOUS_CODING CG2258	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	18934476	3R_18934476_SNP [dm3] 3R_23108754_SNP [dm6]	C	G	2.462e^-4	0.803	INTRON CG13830
2R	17759878	2R_17759878_SNP [dm3] 2R_21872373_SNP [dm6]	G	A	2.462e^-4	0.803	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14300293	3R_14300293_SNP [dm3] 3R_18474571_SNP [dm6]	A	C	2.463e^-4	0.803	INTRON fru	TF binding site BDTNP1_TFBS_dl
3R	18917202	3R_18917202_DEL [dm3] 3R_23091480_DEL [dm6]	GTTTCTCATATAGAAATG...	G	2.464e^-4	0.803	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	7954433	2L_7954433_SNP [dm3] 2L_7954433_SNP [dm6]	T	C	2.466e^-4	0.803	INTRON Snoo
X	15972090	X_15972090_SNP [dm3] X_16078057_SNP [dm6]	C	T	2.470e^-4	0.803	UTR_3_PRIME Tob DOWNSTREAM Tob
2R	18941980	2R_18941980_SNP [dm3] 2R_23054457_SNP [dm6]	T	G	2.475e^-4	0.803	INTERGENIC
X	12398612	X_12398612_SNP [dm3] X_12504579_SNP [dm6]	T	C	2.475e^-4	0.803	INTRON CG2556
X	14712091	X_14712091_SNP [dm3] X_14818058_SNP [dm6]	A	C	2.479e^-4	0.803	INTRON rut
3L	10585891	3L_10585891_INS [dm3] 3L_10592791_INS [dm6]	A	AC	2.488e^-4	0.803	UTR_3_PRIME A2bp1
3L	5045247	3L_5045247_SNP [dm3] 3L_5045247_SNP [dm6]	T	A	2.495e^-4	0.803	INTRON Con
2R	19232260	2R_19232260_SNP [dm3] 2R_23344737_SNP [dm6]	T	C	2.496e^-4	0.803	SYNONYMOUS_CODING CG3502
X	12174031	X_12174031_SNP [dm3] X_12279998_SNP [dm6]	T	C	2.497e^-4	0.803	INTRON Ten-a
2R	19253675	2R_19253675_SNP [dm3] 2R_23366152_SNP [dm6]	G	T	2.513e^-4	0.803	UPSTREAM Ice1 INTRON vir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13894021	2R_13894021_SNP [dm3] 2R_18006516_SNP [dm6]	T	G	2.514e^-4	0.803	DOWNSTREAM CR44419 INTRON dpr13
2R	19253963	2R_19253963_SNP [dm3] 2R_23366440_SNP [dm6]	A	T	2.516e^-4	0.803	UPSTREAM Ice1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1381396	2L_1381396_SNP [dm3] 2L_1381396_SNP [dm6]	A	C	2.526e^-4	0.803	UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9246684	3L_9246684_SNP [dm3] 3L_9253584_SNP [dm6]	C	T	2.539e^-4	0.803	INTRON GluRIB
2L	17461190	2L_17461190_DEL [dm3] 2L_17461190_DEL [dm6]	CC	C	2.540e^-4	0.803	UTR_3_PRIME BicD DOWNSTREAM BicD
3R	25419669	3R_25419669_SNP [dm3] 3R_29593947_SNP [dm6]	C	T	2.546e^-4	0.803	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3727536	3L_3727536_SNP [dm3] 3L_3727536_SNP [dm6]	A	G	2.547e^-4	0.803	INTRON CG32264
3R	17515588	3R_17515588_SNP [dm3] 3R_21689866_SNP [dm6]	G	T	2.549e^-4	0.803	INTRON CG31176
3R	15025207	3R_15025207_SNP [dm3] 3R_19199485_SNP [dm6]	G	A	2.553e^-4	0.803	INTRON CG31475
2R	14296227	2R_14296227_SNP [dm3] 2R_18408722_SNP [dm6]	C	T	2.554e^-4	0.803	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE8
3R	13026585	3R_13026585_SNP [dm3] 3R_17200863_SNP [dm6]	T	A	2.566e^-4	0.803	INTRON Mur89F
X	20361309	X_20361309_INS [dm3] X_20490282_INS [dm6]	T	TGTAT	2.567e^-4	0.803	INTRON RhoGAP19D	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3L	6276507	3L_6276507_SNP [dm3] 3L_6283407_SNP [dm6]	C	G	2.573e^-4	0.803	INTERGENIC
3L	1673375	3L_1673375_SNP [dm3] 3L_1673375_SNP [dm6]	G	C	2.573e^-4	0.803	UPSTREAM CG13930 INTERGENIC
3R	13738334	3R_13738334_SNP [dm3] 3R_17912612_SNP [dm6]	G	T	2.579e^-4	0.803	DOWNSTREAM CG43445 INTRON Rim
3L	21963214	3L_21963214_SNP [dm3] 3L_21970114_SNP [dm6]	C	T	2.585e^-4	0.803	DOWNSTREAM CS-2 INTERGENIC
3R	25419630	3R_25419630_SNP [dm3] 3R_29593908_SNP [dm6]	A	C	2.591e^-4	0.803	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7328291	2R_7328291_SNP [dm3] 2R_11440786_SNP [dm6]	C	T	2.594e^-4	0.803	INTRON CG7777
3R	15660924	3R_15660924_SNP [dm3] 3R_19835202_SNP [dm6]	A	G	2.594e^-4	0.803	INTRON bnl	TF binding site BDTNP1_TFBS_dl
3L	3012061	3L_3012061_SNP [dm3] 3L_3012061_SNP [dm6]	A	G	2.599e^-4	0.803	DOWNSTREAM FMRFaR INTERGENIC
2L	19915232	2L_19915232_SNP [dm3] 2L_19915232_SNP [dm6]	T	A	2.600e^-4	0.803	INTRON sick	TF binding site mE1_TFBS_bab1
3L	10144859	3L_10144859_SNP [dm3] 3L_10151759_SNP [dm6]	T	C	2.611e^-4	0.803	UPSTREAM CG8072 & 1 other INTRON dpr10
3L	949775	3L_949775_SNP [dm3] 3L_949775_SNP [dm6]	G	A	2.613e^-4	0.803	INTRON Glut1	TF binding site BDTNP1_TFBS_dl
2R	9703186	2R_9703186_SNP [dm3] 2R_13815681_SNP [dm6]	T	C	2.614e^-4	0.803	INTRON stj
2R	19915814	2R_19915814_SNP [dm3] 2R_24028291_SNP [dm6]	A	G	2.617e^-4	0.803	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8376371	3R_8376371_SNP [dm3] 3R_12550649_SNP [dm6]	C	T	2.619e^-4	0.803	UTR_3_PRIME Octbeta2R DOWNSTREAM mir-284
2L	11230176	2L_11230176_SNP [dm3] 2L_11230176_SNP [dm6]	A	T	2.622e^-4	0.803	INTRON ab
2R	6892709	2R_6892709_SNP [dm3] 2R_11005204_SNP [dm6]	G	T	2.627e^-4	0.803	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12371272	3R_12371272_SNP [dm3] 3R_16545550_SNP [dm6]	C	A	2.632e^-4	0.803	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	19914765	2R_19914765_SNP [dm3] 2R_24027242_SNP [dm6]	C	T	2.635e^-4	0.803	SYNONYMOUS_CODING PebIII DOWNSTREAM HSPC300
2R	6892569	2R_6892569_SNP [dm3] 2R_11005064_SNP [dm6]	A	G	2.652e^-4	0.803	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25419624	3R_25419624_SNP [dm3] 3R_29593902_SNP [dm6]	C	T	2.654e^-4	0.803	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3626516	X_3626516_SNP [dm3] X_3732483_SNP [dm6]	C	T	2.658e^-4	0.803	INTRON tlk
2L	16366410	2L_16366410_SNP [dm3] 2L_16366410_SNP [dm6]	G	A	2.659e^-4	0.803	SYNONYMOUS_CODING jhamt
X	9689938	X_9689938_SNP [dm3] X_9795905_SNP [dm6]	C	A	2.661e^-4	0.803	INTRON CG32698
2L	13889034	2L_13889034_SNP [dm3] 2L_13889034_SNP [dm6]	T	A	2.665e^-4	0.803	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14226233	2L_14226233_SNP [dm3] 2L_14226233_SNP [dm6]	T	C	2.665e^-4	0.803	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
2R	4431679	2R_4431679_SNP [dm3] 2R_8544174_SNP [dm6]	A	G	2.667e^-4	0.803	UPSTREAM CR44279 INTERGENIC
2L	9313500	2L_9313500_SNP [dm3] 2L_9313500_SNP [dm6]	G	A	2.671e^-4	0.803	INTERGENIC
2L	8052493	2L_8052493_SNP [dm3] 2L_8052493_SNP [dm6]	T	C	2.672e^-4	0.803	SYNONYMOUS_CODING CG7466
X	9701879	X_9701879_DEL [dm3] X_9807846_DEL [dm6]	CGT	C	2.685e^-4	0.803	INTRON CG32698
2L	7485073	2L_7485073_SNP [dm3] 2L_7485073_SNP [dm6]	G	A	2.690e^-4	0.803	INTRON Ziz
3R	18756147	3R_18756147_SNP [dm3] 3R_22930425_SNP [dm6]	C	T	2.690e^-4	0.803	INTRON klg
3R	20337066	3R_20337066_SNP [dm3] 3R_24511344_SNP [dm6]	T	A	2.693e^-4	0.803	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4969939	3L_4969939_SNP [dm3] 3L_4969939_SNP [dm6]	C	T	2.699e^-4	0.803	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9576530	X_9576530_SNP [dm3] X_9682497_SNP [dm6]	A	G	2.700e^-4	0.803	INTRON nej
2L	15277769	2L_15277769_SNP [dm3] 2L_15277769_SNP [dm6]	C	T	2.707e^-4	0.803	UPSTREAM CR43682 INTERGENIC
2L	8072114	2L_8072114_SNP [dm3] 2L_8072114_SNP [dm6]	G	A	2.708e^-4	0.803	SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16007549	X_16007549_SNP [dm3] X_16113516_SNP [dm6]	A	T	2.709e^-4	0.803	INTERGENIC
3R	17515783	3R_17515783_SNP [dm3] 3R_21690061_SNP [dm6]	T	A	2.711e^-4	0.803	INTRON CG31176	TF binding site mE1_TFBS_chinmo
3L	10275603	3L_10275603_SNP [dm3] 3L_10282503_SNP [dm6]	A	T	2.720e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	969120	3L_969120_SNP [dm3] 3L_969120_SNP [dm6]	G	T	2.724e^-4	0.803	INTRON Glut1
3L	969124	3L_969124_SNP [dm3] 3L_969124_SNP [dm6]	A	T	2.724e^-4	0.803	INTRON Glut1
2L	7160962	2L_7160962_SNP [dm3] 2L_7160962_SNP [dm6]	C	T	2.735e^-4	0.803	INTERGENIC
3L	2718259	3L_2718259_SNP [dm3] 3L_2718259_SNP [dm6]	T	G	2.738e^-4	0.803	UTR_3_PRIME Mrtf
X	14306227	X_14306227_SNP [dm3] X_14412194_SNP [dm6]	C	A	2.741e^-4	0.803	INTRON dpr8
3R	24030135	3R_24030135_SNP [dm3] 3R_28204413_SNP [dm6]	G	A	2.746e^-4	0.803	INTRON CG34354
X	5287758	X_5287758_SNP [dm3] X_5393725_SNP [dm6]	T	C	2.747e^-4	0.803	INTRON SK
X	20385721	X_20385721_SNP [dm3] X_20514694_SNP [dm6]	A	G	2.748e^-4	0.803	SYNONYMOUS_CODING CG1812	TF binding site mE1_TFBS_cad
X	5538556	X_5538556_SNP [dm3] X_5644523_SNP [dm6]	A	C	2.748e^-4	0.803	INTRON CG42492
2L	15549775	2L_15549775_SNP [dm3] 2L_15549775_SNP [dm6]	T	C	2.749e^-4	0.803	UPSTREAM CR45728 & 1 other INTERGENIC
3L	2498085	3L_2498085_SNP [dm3] 3L_2498085_SNP [dm6]	T	C	2.758e^-4	0.803	INTRON CG45186
3L	22190290	3L_22190290_SNP [dm3] 3L_22197190_SNP [dm6]	A	C	2.758e^-4	0.803	INTRON olf413
3L	2552346	3L_2552346_SNP [dm3] 3L_2552346_SNP [dm6]	G	C	2.759e^-4	0.803	INTRON Spn	TF binding site BDTNP1_TFBS_dl
2L	10026651	2L_10026651_SNP [dm3] 2L_10026651_SNP [dm6]	C	A	2.764e^-4	0.803	UPSTREAM CG13127 INTERGENIC
2L	14219149	2L_14219149_SNP [dm3] 2L_14219149_SNP [dm6]	T	C	2.764e^-4	0.803	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4969951	3L_4969951_DEL [dm3] 3L_4969951_DEL [dm6]	TTTCGCCT	T	2.767e^-4	0.803	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20833496	X_20833496_SNP [dm3] X_20962469_SNP [dm6]	T	C	2.774e^-4	0.803	DOWNSTREAM Ser6 INTERGENIC
2R	7984848	2R_7984848_SNP [dm3] 2R_12097343_SNP [dm6]	C	T	2.776e^-4	0.803	INTRON jeb
2L	14126620	2L_14126620_SNP [dm3] 2L_14126620_SNP [dm6]	A	G	2.777e^-4	0.803	INTERGENIC
2L	14363202	2L_14363202_SNP [dm3] 2L_14363202_SNP [dm6]	G	C	2.777e^-4	0.803	SPLICE_SITE_REGION spel1 INTRON spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19818506	2R_19818506_SNP [dm3] 2R_23930983_SNP [dm6]	T	C	2.783e^-4	0.803	SYNONYMOUS_CODING Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3317712	2L_3317712_SNP [dm3] 2L_3317712_SNP [dm6]	C	T	2.786e^-4	0.803	DOWNSTREAM CG3277 INTRON CG3326
2L	3966127	2L_3966127_SNP [dm3] 2L_3966127_SNP [dm6]	G	A	2.794e^-4	0.804	INTRON fred
2L	7463674	2L_7463674_SNP [dm3] 2L_7463674_SNP [dm6]	A	T	2.799e^-4	0.804	INTERGENIC
3R	19501397	3R_19501397_SNP [dm3] 3R_23675675_SNP [dm6]	A	G	2.802e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	11397732	2L_11397732_SNP [dm3] 2L_11397732_SNP [dm6]	A	T	2.817e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs
X	19446760	X_19446760_SNP [dm3] X_19552727_SNP [dm6]	C	T	2.823e^-4	0.808	DOWNSTREAM mir-974 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14127743	2L_14127743_SNP [dm3] 2L_14127743_SNP [dm6]	C	T	2.835e^-4	0.81	INTERGENIC
2R	761239	2R_761239_SNP [dm3] 2R_4873734_SNP [dm6]	A	G	2.841e^-4	0.81	INTERGENIC	transposable element FlyBase
3R	10394124	3R_10394124_SNP [dm3] 3R_14568402_SNP [dm6]	A	G	2.849e^-4	0.81	UTR_3_PRIME CG8066 UPSTREAM CG31313 & 1 other DOWNSTREAM Cys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	21843280	X_21843280_SNP [dm3] X_22441444_SNP [dm6]	A	T	2.853e^-4	0.81	INTERGENIC	transposable element FlyBase
3R	6803894	3R_6803894_SNP [dm3] 3R_10978172_SNP [dm6]	C	T	2.855e^-4	0.81	INTRON CG34114
2L	14127652	2L_14127652_SNP [dm3] 2L_14127652_SNP [dm6]	A	T	2.859e^-4	0.81	INTERGENIC
3L	20844872	3L_20844872_SNP [dm3] 3L_20851772_SNP [dm6]	G	A	2.860e^-4	0.81	INTRON CG32432
3L	5690969	3L_5690969_SNP [dm3] 3L_5697869_SNP [dm6]	A	G	2.868e^-4	0.81	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11741376	2R_11741376_SNP [dm3] 2R_15853871_SNP [dm6]	G	T	2.877e^-4	0.81	UTR_3_PRIME tun DOWNSTREAM tun	TF binding site mE1_TFBS_HSA
3R	14453825	3R_14453825_SNP [dm3] 3R_18628103_SNP [dm6]	A	C	2.880e^-4	0.81	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
3L	3132291	3L_3132291_SNP [dm3] 3L_3132291_SNP [dm6]	G	A	2.885e^-4	0.81	INTRON CG11537
2L	7486285	2L_7486285_DEL [dm3] 2L_7486285_DEL [dm6]	TGCTACAATTTCGTTCGGAA...	T	2.887e^-4	0.81	INTRON Ziz
X	10095665	X_10095665_SNP [dm3] X_10201632_SNP [dm6]	T	C	2.895e^-4	0.81	INTRON CR44894
2R	10881993	2R_10881993_SNP [dm3] 2R_14994488_SNP [dm6]	C	G	2.896e^-4	0.81	UPSTREAM CR43830 & 1 other INTERGENIC
2R	14458440	2R_14458440_SNP [dm3] 2R_18570935_SNP [dm6]	G	A	2.899e^-4	0.81	INTRON GEFmeso
2L	5825859	2L_5825859_INS [dm3] 2L_5825859_INS [dm6]	C	CC	2.901e^-4	0.81	INTRON TrissinR
3L	9210895	3L_9210895_SNP [dm3] 3L_9217795_SNP [dm6]	C	T	2.904e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15656910	3R_15656910_SNP [dm3] 3R_19831188_SNP [dm6]	G	T	2.908e^-4	0.81	INTRON bnl
X	9287963	X_9287963_SNP [dm3] X_9393930_SNP [dm6]	A	C	2.917e^-4	0.811	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6839832	2L_6839832_SNP [dm3] 2L_6839832_SNP [dm6]	A	C	2.929e^-4	0.813	DOWNSTREAM sens-2 INTERGENIC
2R	10881436	2R_10881436_SNP [dm3] 2R_14993931_SNP [dm6]	A	T	2.934e^-4	0.813	UPSTREAM CR43830 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18622497	3R_18622497_SNP [dm3] 3R_22796775_SNP [dm6]	A	G	2.943e^-4	0.813	INTERGENIC
X	12654077	X_12654077_SNP [dm3] X_12760044_SNP [dm6]	A	T	2.952e^-4	0.813	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6089723	2L_6089723_SNP [dm3] 2L_6089723_SNP [dm6]	T	G	2.955e^-4	0.813	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	907416	2R_907416_SNP [dm3] 2R_5019911_SNP [dm6]	G	C	2.957e^-4	0.813	INTRON Ir41a	transposable element FlyBase
X	20287613	X_20287613_SNP [dm3] X_20416586_SNP [dm6]	T	C	2.966e^-4	0.813	UPSTREAM Obp19b DOWNSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	5263268	2L_5263268_SNP [dm3] 2L_5263268_SNP [dm6]	T	A	2.973e^-4	0.813	UPSTREAM Cyp4ac1 INTRON tkv
X	16912858	X_16912858_SNP [dm3] X_17018825_SNP [dm6]	T	C	2.976e^-4	0.813	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9803741	2R_9803741_SNP [dm3] 2R_13916236_SNP [dm6]	T	C	2.979e^-4	0.813	INTRON shot
X	11548547	X_11548547_SNP [dm3] X_11654514_SNP [dm6]	A	G	2.979e^-4	0.813	INTRON Ptp10D
3L	11226775	3L_11226775_SNP [dm3] 3L_11233675_SNP [dm6]	G	A	2.985e^-4	0.813	INTRON Ir68a
2L	14723113	2L_14723113_SNP [dm3] 2L_14723113_SNP [dm6]	G	A	2.988e^-4	0.813	INTERGENIC
X	3626515	X_3626515_SNP [dm3] X_3732482_SNP [dm6]	A	T	2.990e^-4	0.813	INTRON tlk
3L	2595302	3L_2595302_SNP [dm3] 3L_2595302_SNP [dm6]	G	A	2.991e^-4	0.813	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
3R	17661543	3R_17661543_SNP [dm3] 3R_21835821_SNP [dm6]	C	T	2.995e^-4	0.813	INTERGENIC
3R	16773530	3R_16773530_INS [dm3] 3R_20947808_INS [dm6]	A	AA	3.001e^-4	0.814	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	20836998	X_20836998_SNP [dm3] X_20965971_SNP [dm6]	G	A	3.006e^-4	0.814	UPSTREAM CG1304 INTERGENIC
2L	12352977	2L_12352977_SNP [dm3] 2L_12352977_SNP [dm6]	C	A	3.011e^-4	0.814	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
X	18236473	X_18236473_SNP [dm3] X_18342440_SNP [dm6]	A	G	3.020e^-4	0.814	INTRON CG6123
3R	23224405	3R_23224405_SNP [dm3] 3R_27398683_SNP [dm6]	T	C	3.020e^-4	0.814	INTRON side
2R	17758464	2R_17758464_SNP [dm3] 2R_21870959_SNP [dm6]	T	A	3.037e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	14482783	X_14482783_SNP [dm3] X_14588750_SNP [dm6]	G	A	3.044e^-4	0.816	INTRON CG9413
2L	10028615	2L_10028615_SNP [dm3] 2L_10028615_SNP [dm6]	G	A	3.045e^-4	0.816	SYNONYMOUS_CODING CG13127
3L	11312417	3L_11312417_SNP [dm3] 3L_11319317_SNP [dm6]	G	T	3.053e^-4	0.816	DOWNSTREAM CG6168 INTERGENIC	TF binding site mE1_TFBS_Kr
X	12603553	X_12603553_SNP [dm3] X_12709520_SNP [dm6]	T	C	3.056e^-4	0.816	DOWNSTREAM CG15725 INTRON Smr
3R	7041175	3R_7041175_SNP [dm3] 3R_11215453_SNP [dm6]	A	T	3.075e^-4	0.816	UTR_3_PRIME RpS25 UPSTREAM ZnT86D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	3626479	X_3626479_SNP [dm3] X_3732446_SNP [dm6]	C	T	3.078e^-4	0.816	INTRON tlk
2R	10881434	2R_10881434_SNP [dm3] 2R_14993929_SNP [dm6]	C	T	3.080e^-4	0.816	UPSTREAM CR43830 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16649929	X_16649929_SNP [dm3] X_16755896_SNP [dm6]	G	A	3.085e^-4	0.816	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7299180	3R_7299180_SNP [dm3] 3R_11473458_SNP [dm6]	G	T	3.090e^-4	0.816	INTERGENIC
2L	9431134	2L_9431134_INS [dm3] 2L_9431134_INS [dm6]	A	AT	3.096e^-4	0.816	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8911114	2R_8911114_SNP [dm3] 2R_13023609_SNP [dm6]	C	G	3.099e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1452660	3L_1452660_SNP [dm3] 3L_1452660_SNP [dm6]	G	T	3.111e^-4	0.816	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	6224410	2L_6224410_SNP [dm3] 2L_6224410_SNP [dm6]	A	T	3.114e^-4	0.816	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5207164	3L_5207164_SNP [dm3] 3L_5214064_SNP [dm6]	C	T	3.118e^-4	0.816	INTRON shep
3L	17437293	3L_17437293_SNP [dm3] 3L_17444193_SNP [dm6]	C	G	3.123e^-4	0.816	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1826698	2L_1826698_SNP [dm3] 2L_1826698_SNP [dm6]	A	T	3.124e^-4	0.816	UPSTREAM CG31664 INTERGENIC
2L	11559619	2L_11559619_SNP [dm3] 2L_11559619_SNP [dm6]	T	G	3.134e^-4	0.816	INTERGENIC
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	3.136e^-4	0.816	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19910192	2R_19910192_SNP [dm3] 2R_24022669_SNP [dm6]	G	A	3.152e^-4	0.816	SYNONYMOUS_CODING CG11388 UPSTREAM CG3907	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18684321	3R_18684321_SNP [dm3] 3R_22858599_SNP [dm6]	C	G	3.154e^-4	0.816	INTERGENIC
3R	13058700	3R_13058700_SNP [dm3] 3R_17232978_SNP [dm6]	T	C	3.158e^-4	0.816	INTRON beat-IIb
2R	18584065	2R_18584065_SNP [dm3] 2R_22696560_SNP [dm6]	A	C	3.159e^-4	0.816	SYNONYMOUS_CODING robo
2R	9263559	2R_9263559_SNP [dm3] 2R_13376054_SNP [dm6]	T	G	3.166e^-4	0.816	UTR_3_PRIME CG10814
3R	18156391	3R_18156391_SNP [dm3] 3R_22330669_SNP [dm6]	G	A	3.172e^-4	0.816	UPSTREAM CG33721 DOWNSTREAM CG7080 INTERGENIC
2R	14458084	2R_14458084_DEL [dm3] 2R_18570579_DEL [dm6]	ATTGT	A	3.174e^-4	0.816	INTRON GEFmeso
2L	14101610	2L_14101610_DEL [dm3] 2L_14101610_DEL [dm6]	AA	G	3.187e^-4	0.816	INTERGENIC
X	6990050	X_6990050_SNP [dm3] X_7096017_SNP [dm6]	A	T	3.192e^-4	0.816	INTRON Sxl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	6993841	X_6993841_SNP [dm3] X_7099808_SNP [dm6]	C	T	3.192e^-4	0.816	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6995888	X_6995888_SNP [dm3] X_7101855_SNP [dm6]	T	C	3.192e^-4	0.816	DOWNSTREAM CG4617 INTRON CG4615	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24247335	3R_24247335_SNP [dm3] 3R_28421613_SNP [dm6]	C	A	3.193e^-4	0.816	INTRON beat-VI
2R	10103244	2R_10103244_SNP [dm3] 2R_14215739_SNP [dm6]	T	C	3.193e^-4	0.816	DOWNSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14295347	2R_14295347_SNP [dm3] 2R_18407842_SNP [dm6]	G	T	3.205e^-4	0.816	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2L	5333111	2L_5333111_SNP [dm3] 2L_5333111_SNP [dm6]	C	T	3.206e^-4	0.816	INTRON fusl	TF binding site mE1_TFBS_cad
3L	21761546	3L_21761546_SNP [dm3] 3L_21768446_SNP [dm6]	C	T	3.213e^-4	0.816	INTRON Syn1 & 1 other
2L	12981323	2L_12981323_SNP [dm3] 2L_12981323_SNP [dm6]	A	T	3.213e^-4	0.816	DOWNSTREAM Vha68-3 INTERGENIC
2R	9067313	2R_9067313_SNP [dm3] 2R_13179808_SNP [dm6]	T	A	3.217e^-4	0.816	UTR_5_PRIME CG17724 UTR_3_PRIME Kdm4B & 1 other INTRON CG17724 & 1 other
3R	6719369	3R_6719369_SNP [dm3] 3R_10893647_SNP [dm6]	A	G	3.221e^-4	0.816	UPSTREAM CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	1079681	2L_1079681_SNP [dm3] 2L_1079681_SNP [dm6]	G	A	3.224e^-4	0.816	SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
X	20242633	X_20242633_SNP [dm3] X_20371606_SNP [dm6]	C	A	3.224e^-4	0.816	INTERGENIC
X	19231123	X_19231123_DEL [dm3] X_19337090_DEL [dm6]	AG	A	3.226e^-4	0.816	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
X	14776558	X_14776558_INS [dm3] X_14882525_INS [dm6]	T	TAT	3.228e^-4	0.816	UTR_5_PRIME CG45064 & 1 other INTRON Flo2
2R	18880009	2R_18880009_SNP [dm3] 2R_22992486_SNP [dm6]	T	A	3.238e^-4	0.816	INTRON twi
X	6990608	X_6990608_DEL [dm3] X_7096575_DEL [dm6]	TC	T	3.252e^-4	0.816	INTRON Sxl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13505254	2R_13505254_SNP [dm3] 2R_17617749_SNP [dm6]	G	C	3.262e^-4	0.816	UTR_5_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936
2R	19818104	2R_19818104_SNP [dm3] 2R_23930581_SNP [dm6]	A	G	3.262e^-4	0.816	SYNONYMOUS_CODING Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13738780	3R_13738780_SNP [dm3] 3R_17913058_SNP [dm6]	G	A	3.277e^-4	0.816	INTRON Rim
2R	19911634	2R_19911634_SNP [dm3] 2R_24024111_SNP [dm6]	A	G	3.282e^-4	0.816	UPSTREAM Adk2 DOWNSTREAM CG11388 EXON CR45350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	16148931	X_16148931_SNP [dm3] X_16254898_SNP [dm6]	G	C	3.283e^-4	0.816	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15081132	3L_15081132_INS [dm3] 3L_15088032_INS [dm6]	T	TTATTTGATTT...	3.292e^-4	0.816	INTRON cp309
2L	6673349	2L_6673349_SNP [dm3] 2L_6673349_SNP [dm6]	C	A	3.295e^-4	0.816	UPSTREAM CG34310 & 1 other INTRON cup & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	8928275	X_8928275_SNP [dm3] X_9034242_SNP [dm6]	C	T	3.299e^-4	0.816	INTRON CR43836 & 1 other
2L	10459113	2L_10459113_SNP [dm3] 2L_10459113_SNP [dm6]	C	T	3.300e^-4	0.816	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8933037	2L_8933037_SNP [dm3] 2L_8933037_SNP [dm6]	G	A	3.305e^-4	0.816	NON_SYNONYMOUS_CODING CG34398 UTR_3_PRIME CG34398 UPSTREAM Tsp29Fa DOWNSTREAM CG34398
X	21837442	X_21837442_SNP [dm3] X_22435607_SNP [dm6]	G	A	3.308e^-4	0.816	INTERGENIC	transposable element FlyBase
2R	9707915	2R_9707915_SNP [dm3] 2R_13820410_SNP [dm6]	T	G	3.317e^-4	0.816	SYNONYMOUS_CODING fl_2_d DOWNSTREAM stj	TF binding site mE1_TFBS_sens
2R	4887256	2R_4887256_SNP [dm3] 2R_8999751_SNP [dm6]	A	G	3.320e^-4	0.816	INTRON Np
2R	13521000	2R_13521000_SNP [dm3] 2R_17633495_SNP [dm6]	A	G	3.321e^-4	0.816	UTR_5_PRIME rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site BDTNP1_TFBS_dl
2L	15137830	2L_15137830_DEL [dm3] 2L_15137830_DEL [dm6]	ATAACAATTTGATGATTTAG...	A	3.322e^-4	0.816	INTERGENIC
3L	6519841	3L_6519841_SNP [dm3] 3L_6526741_SNP [dm6]	G	A	3.325e^-4	0.816	INTRON sfl
2R	18942475	2R_18942475_SNP [dm3] 2R_23054952_SNP [dm6]	C	G	3.329e^-4	0.816	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7041001	3R_7041001_DEL [dm3] 3R_11215279_DEL [dm6]	ACAA	A	3.342e^-4	0.816	UTR_3_PRIME RpS25 UPSTREAM ZnT86D DOWNSTREAM RpS25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8842794	3L_8842794_SNP [dm3] 3L_8849694_SNP [dm6]	T	C	3.345e^-4	0.816	INTRON dally
3R	15656902	3R_15656902_SNP [dm3] 3R_19831180_SNP [dm6]	T	G	3.346e^-4	0.816	INTRON bnl
2L	9948726	2L_9948726_SNP [dm3] 2L_9948726_SNP [dm6]	G	T	3.347e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7351803	2L_7351803_SNP [dm3] 2L_7351803_SNP [dm6]	T	C	3.348e^-4	0.816	INTRON Wnt6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	12175664	X_12175664_SNP [dm3] X_12281631_SNP [dm6]	T	C	3.348e^-4	0.816	INTRON Ten-a
3R	16773596	3R_16773596_SNP [dm3] 3R_20947874_SNP [dm6]	T	C	3.350e^-4	0.816	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3L	6770171	3L_6770171_SNP [dm3] 3L_6777071_SNP [dm6]	C	T	3.356e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20343564	2L_20343564_SNP [dm3] 2L_20343564_SNP [dm6]	G	T	3.357e^-4	0.816	INTRON spir
X	11548552	X_11548552_DEL [dm3] X_11654519_DEL [dm6]	CGCCAAGTTC	C	3.371e^-4	0.816	INTRON Ptp10D
X	20905050	X_20905050_SNP [dm3] X_21034023_SNP [dm6]	C	T	3.374e^-4	0.816	INTERGENIC	transposable element FlyBase
2R	19912148	2R_19912148_SNP [dm3] 2R_24024625_SNP [dm6]	G	A	3.375e^-4	0.816	DOWNSTREAM CG11388 INTRON Adk2 EXON CR45350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3070963	X_3070963_DEL [dm3] X_3176930_DEL [dm6]	AA	A	3.376e^-4	0.816	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	16912816	X_16912816_SNP [dm3] X_17018783_SNP [dm6]	A	T	3.380e^-4	0.816	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21835795	X_21835795_SNP [dm3] X_22433960_SNP [dm6]	A	G	3.387e^-4	0.816	INTERGENIC	transposable element FlyBase
X	12175358	X_12175358_SNP [dm3] X_12281325_SNP [dm6]	G	A	3.388e^-4	0.816	INTRON Ten-a
X	12654217	X_12654217_SNP [dm3] X_12760184_SNP [dm6]	A	T	3.391e^-4	0.816	DOWNSTREAM CG12717 INTRON ade5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1544601	2L_1544601_SNP [dm3] 2L_1544601_SNP [dm6]	G	A	3.398e^-4	0.816	INTERGENIC
3R	18618863	3R_18618863_SNP [dm3] 3R_22793141_SNP [dm6]	T	G	3.401e^-4	0.816	UTR_3_PRIME CG7029
X	4200808	X_4200808_SNP [dm3] X_4306775_SNP [dm6]	T	A	3.411e^-4	0.816	INTERGENIC
2L	1078770	2L_1078770_SNP [dm3] 2L_1078770_SNP [dm6]	G	C	3.415e^-4	0.816	NON_SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	3.415e^-4	0.816	INTRON salr	regulatory region REDfly_CRMs
3R	26922357	3R_26922357_SNP [dm3] 3R_31096635_SNP [dm6]	G	C	3.421e^-4	0.816	INTRON CG11317
3R	10224650	3R_10224650_SNP [dm3] 3R_14398928_SNP [dm6]	A	C	3.425e^-4	0.816	INTRON cv-c
3R	18993436	3R_18993436_SNP [dm3] 3R_23167714_SNP [dm6]	A	T	3.427e^-4	0.816	UPSTREAM Irk1 INTERGENIC
3R	18993437	3R_18993437_SNP [dm3] 3R_23167715_SNP [dm6]	A	G	3.427e^-4	0.816	UPSTREAM Irk1 INTERGENIC
3R	18993445	3R_18993445_SNP [dm3] 3R_23167723_SNP [dm6]	A	T	3.427e^-4	0.816	UPSTREAM Irk1 INTERGENIC
2L	10459116	2L_10459116_SNP [dm3] 2L_10459116_SNP [dm6]	T	A	3.431e^-4	0.816	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18721607	X_18721607_SNP [dm3] X_18827574_SNP [dm6]	C	T	3.433e^-4	0.816	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
X	12173316	X_12173316_SNP [dm3] X_12279283_SNP [dm6]	G	A	3.439e^-4	0.816	INTRON Ten-a
X	6988533	X_6988533_SNP [dm3] X_7094500_SNP [dm6]	T	C	3.440e^-4	0.816	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1824306	3L_1824306_SNP [dm3] 3L_1824306_SNP [dm6]	G	A	3.447e^-4	0.816	UTR_3_PRIME Cpr62Ba
2L	9948919	2L_9948919_INS [dm3] 2L_9948919_INS [dm6]	G	TA	3.448e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_inv
X	20683862	X_20683862_SNP [dm3] X_20812835_SNP [dm6]	T	G	3.455e^-4	0.816	INTRON shakB
3R	17516148	3R_17516148_INS [dm3] 3R_21690426_INS [dm6]	G	GG	3.466e^-4	0.816	INTRON CG31176	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19441113	2R_19441113_SNP [dm3] 2R_23553590_SNP [dm6]	A	G	3.466e^-4	0.816	DOWNSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	9287926	X_9287926_SNP [dm3] X_9393893_SNP [dm6]	G	A	3.471e^-4	0.816	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11490132	2R_11490132_SNP [dm3] 2R_15602627_SNP [dm6]	C	A	3.475e^-4	0.816	INTERGENIC
2R	8550336	2R_8550336_SNP [dm3] 2R_12662831_SNP [dm6]	A	G	3.475e^-4	0.816	UPSTREAM nemy INTRON nemy
3R	12383622	3R_12383622_SNP [dm3] 3R_16557900_SNP [dm6]	G	A	3.479e^-4	0.816	INTRON CG42342
X	9021514	X_9021514_SNP [dm3] X_9127481_SNP [dm6]	G	A	3.485e^-4	0.816	INTRON fend	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	3479768	3L_3479768_SNP [dm3] 3L_3479768_SNP [dm6]	G	A	3.487e^-4	0.816	INTRON CG42324
3R	18154392	3R_18154392_SNP [dm3] 3R_22328670_SNP [dm6]	G	A	3.488e^-4	0.816	UPSTREAM CG7080 INTERGENIC
3R	11483576	3R_11483576_SNP [dm3] 3R_15657854_SNP [dm6]	C	A	3.492e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	949780	3L_949780_SNP [dm3] 3L_949780_SNP [dm6]	A	G	3.494e^-4	0.816	INTRON Glut1	TF binding site BDTNP1_TFBS_dl
2L	14221957	2L_14221957_SNP [dm3] 2L_14221957_SNP [dm6]	A	C	3.509e^-4	0.816	INTRON Dyrk2
2L	7472223	2L_7472223_SNP [dm3] 2L_7472223_SNP [dm6]	C	A	3.515e^-4	0.816	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
2R	18587646	2R_18587646_SNP [dm3] 2R_22700141_SNP [dm6]	T	G	3.525e^-4	0.816	INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	18916561	3R_18916561_SNP [dm3] 3R_23090839_SNP [dm6]	G	C	3.526e^-4	0.816	UPSTREAM CG6726 & 1 other INTRON CG13830
3L	4776977	3L_4776977_INS [dm3] 3L_4776977_INS [dm6]	A	AA	3.526e^-4	0.816	INTRON RhoGEF64C
3L	2498081	3L_2498081_SNP [dm3] 3L_2498081_SNP [dm6]	T	A	3.547e^-4	0.816	INTRON CG45186
2R	7461583	2R_7461583_SNP [dm3] 2R_11574078_SNP [dm6]	C	A	3.549e^-4	0.816	INTERGENIC
X	16523825	X_16523825_SNP [dm3] X_16629792_SNP [dm6]	A	G	3.552e^-4	0.816	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14810618	X_14810618_SNP [dm3] X_14916585_SNP [dm6]	T	A	3.554e^-4	0.816	DOWNSTREAM Eo INTRON Flo2
3R	18993423	3R_18993423_SNP [dm3] 3R_23167701_SNP [dm6]	G	T	3.554e^-4	0.816	UPSTREAM Irk1 INTERGENIC
3L	1453513	3L_1453513_DEL [dm3] 3L_1453513_DEL [dm6]	GACCA	G	3.562e^-4	0.816	INTRON Ptp61F
3L	7838718	3L_7838718_SNP [dm3] 3L_7845618_SNP [dm6]	C	T	3.564e^-4	0.816	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	21454512	X_21454512_SNP [dm3] X_21583485_SNP [dm6]	A	G	3.568e^-4	0.816	UPSTREAM CR44711 INTERGENIC
X	19663412	X_19663412_SNP [dm3] X_19769379_SNP [dm6]	C	G	3.569e^-4	0.816	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7034596	3L_7034596_SNP [dm3] 3L_7041496_SNP [dm6]	C	T	3.577e^-4	0.816	INTRON Mp	TF binding site mE1_TFBS_inv
2L	12491913	2L_12491913_SNP [dm3] 2L_12491913_SNP [dm6]	A	C	3.580e^-4	0.816	UTR_5_PRIME bun INTRON bun
X	3847329	X_3847329_SNP [dm3] X_3953296_SNP [dm6]	G	A	3.586e^-4	0.816	UTR_3_PRIME Vap-33A
2L	7135395	2L_7135395_SNP [dm3] 2L_7135395_SNP [dm6]	G	C	3.592e^-4	0.816	INTRON Pvf3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18917134	3R_18917134_SNP [dm3] 3R_23091412_SNP [dm6]	C	T	3.592e^-4	0.816	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
3L	16645422	3L_16645422_SNP [dm3] 3L_16652322_SNP [dm6]	C	T	3.594e^-4	0.816	INTRON Baldspot	TF binding site mE1_TFBS_sens
X	19020676	X_19020676_DEL [dm3] X_19126643_DEL [dm6]	ACATATATACATA...	A	3.596e^-4	0.816	INTRON tgy
X	3852710	X_3852710_SNP [dm3] X_3958677_SNP [dm6]	C	T	3.610e^-4	0.816	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo
3R	25519120	3R_25519120_SNP [dm3] 3R_29693398_SNP [dm6]	C	T	3.612e^-4	0.816	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4969716	3L_4969716_SNP [dm3] 3L_4969716_SNP [dm6]	G	T	3.614e^-4	0.816	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25983968	3R_25983968_SNP [dm3] 3R_30158246_SNP [dm6]	C	A	3.618e^-4	0.816	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	14237800	2L_14237800_SNP [dm3] 2L_14237800_SNP [dm6]	G	A	3.618e^-4	0.816	INTERGENIC
X	3210998	X_3210998_SNP [dm3] X_3316965_SNP [dm6]	A	G	3.621e^-4	0.816	UPSTREAM CG10793 INTRON dnc & 1 other
2L	9304583	2L_9304583_SNP [dm3] 2L_9304583_SNP [dm6]	T	C	3.625e^-4	0.816	EXON CR42844
3R	18971322	3R_18971322_SNP [dm3] 3R_23145600_SNP [dm6]	G	T	3.630e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	17437290	3L_17437290_SNP [dm3] 3L_17444190_SNP [dm6]	C	T	3.630e^-4	0.816	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17437292	3L_17437292_SNP [dm3] 3L_17444192_SNP [dm6]	T	C	3.630e^-4	0.816	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14101587	2L_14101587_SNP [dm3] 2L_14101587_SNP [dm6]	C	T	3.645e^-4	0.816	INTERGENIC
2L	7614008	2L_7614008_SNP [dm3] 2L_7614008_SNP [dm6]	G	A	3.649e^-4	0.816	NON_SYNONYMOUS_CODING CG6739
2L	9580774	2L_9580774_SNP [dm3] 2L_9580774_SNP [dm6]	C	T	3.654e^-4	0.816	SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	12992776	X_12992776_SNP [dm3] X_13098743_SNP [dm6]	A	G	3.656e^-4	0.816	INTRON CG43313
X	21889661	X_21889661_SNP [dm3] X_22487825_SNP [dm6]	G	C	3.661e^-4	0.816	DOWNSTREAM CR43493 & 1 other INTRON l_1_G0196
2L	3481716	2L_3481716_SNP [dm3] 2L_3481716_SNP [dm6]	A	G	3.663e^-4	0.816	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16793253	3R_16793253_SNP [dm3] 3R_20967531_SNP [dm6]	T	A	3.669e^-4	0.816	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	3.669e^-4	0.816	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13773724	2L_13773724_SNP [dm3] 2L_13773724_SNP [dm6]	G	A	3.670e^-4	0.816	UTR_3_PRIME TM9SF4 UPSTREAM CG43376 DOWNSTREAM CG9008
3R	7646980	3R_7646980_SNP [dm3] 3R_11821258_SNP [dm6]	T	A	3.672e^-4	0.816	DOWNSTREAM CoVa INTRON CG6950	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17050544	3L_17050544_SNP [dm3] 3L_17057444_SNP [dm6]	A	T	3.672e^-4	0.816	INTRON CG7724	TF binding site mE1_TFBS_cad
2L	13310504	2L_13310504_SNP [dm3] 2L_13310504_SNP [dm6]	A	G	3.680e^-4	0.816	INTRON CG43778
2R	6894688	2R_6894688_SNP [dm3] 2R_11007183_SNP [dm6]	A	G	3.685e^-4	0.816	INTRON luna
2R	9503175	2R_9503175_SNP [dm3] 2R_13615670_SNP [dm6]	G	A	3.691e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4066395	X_4066395_SNP [dm3] X_4172362_SNP [dm6]	C	A	3.694e^-4	0.816	INTRON Fas2
X	12722108	X_12722108_SNP [dm3] X_12828075_SNP [dm6]	A	T	3.701e^-4	0.816	INTRON Pde9
3L	16648929	3L_16648929_SNP [dm3] 3L_16655829_SNP [dm6]	A	G	3.707e^-4	0.816	INTRON Baldspot
2L	9649310	2L_9649310_SNP [dm3] 2L_9649310_SNP [dm6]	C	T	3.708e^-4	0.816	SYNONYMOUS_CODING Apoltp
2L	13960682	2L_13960682_SNP [dm3] 2L_13960682_SNP [dm6]	T	A	3.711e^-4	0.816	INTRON NimA
3R	18917438	3R_18917438_SNP [dm3] 3R_23091716_SNP [dm6]	T	A	3.715e^-4	0.816	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17453456	2R_17453456_SNP [dm3] 2R_21565951_SNP [dm6]	A	T	3.716e^-4	0.816	INTRON CG10440
3L	6574851	3L_6574851_SNP [dm3] 3L_6581751_SNP [dm6]	G	A	3.725e^-4	0.816	INTRON CG18769 & 1 other
3L	2440110	3L_2440110_SNP [dm3] 3L_2440110_SNP [dm6]	A	T	3.727e^-4	0.816	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10694896	2R_10694896_SNP [dm3] 2R_14807391_SNP [dm6]	T	A	3.733e^-4	0.816	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
3L	3607491	3L_3607491_SNP [dm3] 3L_3607491_SNP [dm6]	C	T	3.738e^-4	0.816	INTRON Eip63E
3R	18993424	3R_18993424_SNP [dm3] 3R_23167702_SNP [dm6]	G	A	3.751e^-4	0.816	UPSTREAM Irk1 INTERGENIC
2L	14723143	2L_14723143_SNP [dm3] 2L_14723143_SNP [dm6]	T	C	3.758e^-4	0.816	INTERGENIC
3R	18793430	3R_18793430_SNP [dm3] 3R_22967708_SNP [dm6]	A	C	3.761e^-4	0.816	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13520326	2R_13520326_SNP [dm3] 2R_17632821_SNP [dm6]	A	G	3.771e^-4	0.816	NON_SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18917160	3R_18917160_DEL [dm3] 3R_23091438_DEL [dm6]	CAA	GT	3.771e^-4	0.816	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	5022356	2L_5022356_SNP [dm3] 2L_5022356_SNP [dm6]	G	C	3.779e^-4	0.816	INTRON vkg
2L	13966844	2L_13966844_SNP [dm3] 2L_13966844_SNP [dm6]	C	T	3.784e^-4	0.816	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26456909	3R_26456909_SNP [dm3] 3R_30631187_SNP [dm6]	G	T	3.788e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12370844	3R_12370844_SNP [dm3] 3R_16545122_SNP [dm6]	G	A	3.790e^-4	0.816	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12398587	X_12398587_SNP [dm3] X_12504554_SNP [dm6]	C	T	3.795e^-4	0.816	INTRON CG2556
2R	18356876	2R_18356876_SNP [dm3] 2R_22469371_SNP [dm6]	G	A	3.796e^-4	0.816	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4045765	2R_4045765_SNP [dm3] 2R_8158260_SNP [dm6]	T	C	3.804e^-4	0.816	UPSTREAM tRNA:CR30297 & 1 other EXON CR44068
X	9027004	X_9027004_SNP [dm3] X_9132971_SNP [dm6]	C	A	3.804e^-4	0.816	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13478989	3R_13478989_SNP [dm3] 3R_17653267_SNP [dm6]	T	C	3.805e^-4	0.816	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14723084	2L_14723084_SNP [dm3] 2L_14723084_SNP [dm6]	C	T	3.805e^-4	0.816	INTERGENIC
3L	2743681	3L_2743681_SNP [dm3] 3L_2743681_SNP [dm6]	G	C	3.810e^-4	0.816	INTRON Mrtf
2L	7956422	2L_7956422_SNP [dm3] 2L_7956422_SNP [dm6]	T	A	3.813e^-4	0.816	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	18090079	3L_18090079_SNP [dm3] 3L_18096979_SNP [dm6]	A	C	3.817e^-4	0.816	INTRON CG13698
2R	19861028	2R_19861028_SNP [dm3] 2R_23973505_SNP [dm6]	T	A	3.821e^-4	0.816	INTRON mr	TF binding site mE1_TFBS_sens
3R	7875343	3R_7875343_SNP [dm3] 3R_12049621_SNP [dm6]	C	T	3.824e^-4	0.816	UPSTREAM CG14739 INTERGENIC
3L	15845090	3L_15845090_SNP [dm3] 3L_15851990_SNP [dm6]	A	C	3.828e^-4	0.816	INTRON pHCl
3L	21998836	3L_21998836_DEL [dm3] 3L_22005736_DEL [dm6]	CAAAT	C	3.835e^-4	0.816	INTERGENIC
2L	11891073	2L_11891073_SNP [dm3] 2L_11891073_SNP [dm6]	T	A	3.839e^-4	0.816	INTRON Pde1c
X	6386831	X_6386831_SNP [dm3] X_6492798_SNP [dm6]	C	A	3.841e^-4	0.816	INTRON CG42340
2L	7160669	2L_7160669_SNP [dm3] 2L_7160669_SNP [dm6]	T	A	3.843e^-4	0.816	INTERGENIC
2L	18648389	2L_18648389_SNP [dm3] 2L_18648389_SNP [dm6]	T	A	3.846e^-4	0.816	INTRON MESR3
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	3.848e^-4	0.816	INTRON cu
3R	14881456	3R_14881456_SNP [dm3] 3R_19055734_SNP [dm6]	C	T	3.858e^-4	0.816	INTRON cdi
2L	1075417	2L_1075417_SNP [dm3] 2L_1075417_SNP [dm6]	A	C	3.858e^-4	0.816	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	10463274	2L_10463274_SNP [dm3] 2L_10463274_SNP [dm6]	C	G	3.864e^-4	0.816	DOWNSTREAM RluA-1 & 1 other INTERGENIC
X	19109862	X_19109862_SNP [dm3] X_19215829_SNP [dm6]	T	C	3.888e^-4	0.821	SYNONYMOUS_CODING Muc18B DOWNSTREAM Mur18B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16401384	2L_16401384_SNP [dm3] 2L_16401384_SNP [dm6]	C	T	3.914e^-4	0.823	INTRON CG5888
2L	14120972	2L_14120972_SNP [dm3] 2L_14120972_SNP [dm6]	C	G	3.931e^-4	0.823	INTERGENIC
3L	11313894	3L_11313894_SNP [dm3] 3L_11320794_SNP [dm6]	A	C	3.946e^-4	0.823	NON_SYNONYMOUS_CODING CG6168
X	5279495	X_5279495_SNP [dm3] X_5385462_SNP [dm6]	A	T	3.946e^-4	0.823	INTRON SK
2R	13520344	2R_13520344_SNP [dm3] 2R_17632839_SNP [dm6]	G	T	3.949e^-4	0.823	NON_SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13965462	2L_13965462_SNP [dm3] 2L_13965462_SNP [dm6]	A	T	3.952e^-4	0.823	DOWNSTREAM NimB1 INTRON NimB2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4087075	X_4087075_SNP [dm3] X_4193042_SNP [dm6]	C	T	3.963e^-4	0.823	INTRON Fas2
2L	6608789	2L_6608789_SNP [dm3] 2L_6608789_SNP [dm6]	T	G	3.964e^-4	0.823	INTERGENIC
2R	19252414	2R_19252414_SNP [dm3] 2R_23364891_SNP [dm6]	A	T	3.964e^-4	0.823	NON_SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15966408	X_15966408_SNP [dm3] X_16072375_SNP [dm6]	T	C	3.965e^-4	0.823	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13467704	X_13467704_SNP [dm3] X_13573671_SNP [dm6]	G	T	3.970e^-4	0.823	INTRON Tango13
2L	15540906	2L_15540906_SNP [dm3] 2L_15540906_SNP [dm6]	A	G	3.971e^-4	0.823	INTERGENIC
2R	19907749	2R_19907749_SNP [dm3] 2R_24020226_SNP [dm6]	C	A	3.973e^-4	0.823	UTR_3_PRIME CG3907 DOWNSTREAM CG3121
3R	10250977	3R_10250977_SNP [dm3] 3R_14425255_SNP [dm6]	A	G	3.976e^-4	0.823	INTRON cv-c
X	10839241	X_10839241_SNP [dm3] X_10945208_SNP [dm6]	A	G	3.983e^-4	0.823	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	11103927	X_11103927_SNP [dm3] X_11209894_SNP [dm6]	A	C	3.984e^-4	0.823	INTERGENIC
X	6975797	X_6975797_SNP [dm3] X_7081764_SNP [dm6]	T	C	3.984e^-4	0.823	INTRON Sxl
X	12175035	X_12175035_SNP [dm3] X_12281002_SNP [dm6]	G	A	3.989e^-4	0.823	INTRON Ten-a
3R	14700966	3R_14700966_SNP [dm3] 3R_18875244_SNP [dm6]	T	C	3.994e^-4	0.823	UPSTREAM CG14298 INTERGENIC
3R	15561106	3R_15561106_SNP [dm3] 3R_19735384_SNP [dm6]	C	T	3.997e^-4	0.823	INTRON GluClalpha
2L	6291812	2L_6291812_SNP [dm3] 2L_6291812_SNP [dm6]	A	G	4.014e^-4	0.823	DOWNSTREAM Ddr INTRON Ddr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18921410	3R_18921410_SNP [dm3] 3R_23095688_SNP [dm6]	G	C	4.017e^-4	0.823	UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_inv
3R	23985383	3R_23985383_SNP [dm3] 3R_28159661_SNP [dm6]	G	C	4.019e^-4	0.823	INTRON CG34354
3L	15902531	3L_15902531_DEL [dm3] 3L_15909431_DEL [dm6]	TT	T	4.023e^-4	0.823	INTRON sff
3L	20857283	3L_20857283_SNP [dm3] 3L_20864183_SNP [dm6]	G	A	4.025e^-4	0.823	INTRON CG32432
2L	1025021	2L_1025021_SNP [dm3] 2L_1025021_SNP [dm6]	G	A	4.027e^-4	0.823	INTRON IA-2
3R	14173629	3R_14173629_SNP [dm3] 3R_18347907_SNP [dm6]	A	T	4.033e^-4	0.823	INTRON CG15803
X	5121187	X_5121187_SNP [dm3] X_5227154_SNP [dm6]	G	A	4.035e^-4	0.823	INTRON CG15465 & 1 other
X	20356575	X_20356575_SNP [dm3] X_20485548_SNP [dm6]	A	T	4.037e^-4	0.823	UPSTREAM CG15461 INTRON RhoGAP19D
3L	5007029	3L_5007029_SNP [dm3] 3L_5007029_SNP [dm6]	G	C	4.042e^-4	0.823	INTRON Con
3L	492803	3L_492803_SNP [dm3] 3L_492803_SNP [dm6]	C	G	4.047e^-4	0.823	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6621366	2L_6621366_SNP [dm3] 2L_6621366_SNP [dm6]	T	G	4.051e^-4	0.823	INTRON CG11320
2L	7610420	2L_7610420_SNP [dm3] 2L_7610420_SNP [dm6]	C	T	4.054e^-4	0.823	INTRON CG6739
2L	7160958	2L_7160958_SNP [dm3] 2L_7160958_SNP [dm6]	C	T	4.054e^-4	0.823	INTERGENIC
3R	18961657	3R_18961657_SNP [dm3] 3R_23135935_SNP [dm6]	A	C	4.059e^-4	0.823	INTRON hh	regulatory region REDfly_CRMs
3R	12859828	3R_12859828_SNP [dm3] 3R_17034106_SNP [dm6]	T	G	4.059e^-4	0.823	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2L	11569849	2L_11569849_SNP [dm3] 2L_11569849_SNP [dm6]	A	G	4.060e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2290496	X_2290496_SNP [dm3] X_2396463_SNP [dm6]	A	T	4.067e^-4	0.823	INTERGENIC
3L	3727513	3L_3727513_INS [dm3] 3L_3727513_INS [dm6]	A	TCAACTTC	4.076e^-4	0.823	INTRON CG32264
X	19279870	X_19279870_INS [dm3] X_19385837_INS [dm6]	A	AA	4.089e^-4	0.823	INTRON kek5
2R	4565334	2R_4565334_INS [dm3] 2R_8677829_INS [dm6]	T	TCGAATAT	4.094e^-4	0.823	DOWNSTREAM CG30354 INTRON Acsl
2R	16620412	2R_16620412_SNP [dm3] 2R_20732907_SNP [dm6]	T	C	4.112e^-4	0.823	INTRON dpr
3L	4410112	3L_4410112_SNP [dm3] 3L_4410112_SNP [dm6]	C	A	4.112e^-4	0.823	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	7479508	2L_7479508_SNP [dm3] 2L_7479508_SNP [dm6]	A	C	4.114e^-4	0.823	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
3L	3188322	3L_3188322_SNP [dm3] 3L_3188322_SNP [dm6]	G	A	4.115e^-4	0.823	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957
3R	23983206	3R_23983206_SNP [dm3] 3R_28157484_SNP [dm6]	A	T	4.116e^-4	0.823	INTRON CG34354	TF binding site mE1_TFBS_inv
3R	13856596	3R_13856596_DEL [dm3] 3R_18030874_DEL [dm6]	GA	G	4.123e^-4	0.823	INTERGENIC
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	4.128e^-4	0.823	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18832344	X_18832344_SNP [dm3] X_18938311_SNP [dm6]	A	T	4.128e^-4	0.823	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2R	4138994	2R_4138994_SNP [dm3] 2R_8251489_SNP [dm6]	A	T	4.138e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	9857083	2R_9857083_SNP [dm3] 2R_13969578_SNP [dm6]	T	C	4.140e^-4	0.823	SYNONYMOUS_CODING Aats-phe DOWNSTREAM St4	TF binding site mE1_TFBS_HSA
3R	14173543	3R_14173543_SNP [dm3] 3R_18347821_SNP [dm6]	T	A	4.144e^-4	0.823	INTRON CG15803
3L	17437228	3L_17437228_SNP [dm3] 3L_17444128_SNP [dm6]	C	T	4.144e^-4	0.823	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20390310	X_20390310_SNP [dm3] X_20519283_SNP [dm6]	G	A	4.157e^-4	0.823	INTRON Tak1
2R	12670084	2R_12670084_SNP [dm3] 2R_16782579_SNP [dm6]	T	C	4.159e^-4	0.823	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12432365	X_12432365_SNP [dm3] X_12538332_SNP [dm6]	T	A	4.160e^-4	0.823	INTRON CG43921
X	12721646	X_12721646_SNP [dm3] X_12827613_SNP [dm6]	C	T	4.164e^-4	0.823	INTRON Pde9
X	12203001	X_12203001_SNP [dm3] X_12308968_SNP [dm6]	G	C	4.172e^-4	0.823	INTRON Ten-a
3L	4226825	3L_4226825_SNP [dm3] 3L_4226825_SNP [dm6]	T	C	4.173e^-4	0.823	UTR_5_PRIME ImpL2 UPSTREAM ImpL2 INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14792163	X_14792163_SNP [dm3] X_14898130_SNP [dm6]	G	A	4.177e^-4	0.823	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4897079	2L_4897079_SNP [dm3] 2L_4897079_SNP [dm6]	A	G	4.178e^-4	0.823	INTRON CG3036
X	20364785	X_20364785_SNP [dm3] X_20493758_SNP [dm6]	C	T	4.184e^-4	0.823	INTRON RhoGAP19D
2L	7042152	2L_7042152_SNP [dm3] 2L_7042152_SNP [dm6]	T	A	4.205e^-4	0.823	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14129154	2L_14129154_SNP [dm3] 2L_14129154_SNP [dm6]	T	C	4.208e^-4	0.823	INTERGENIC
2R	17354779	2R_17354779_SNP [dm3] 2R_21467274_SNP [dm6]	A	G	4.214e^-4	0.823	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18065958	X_18065958_SNP [dm3] X_18171925_SNP [dm6]	G	A	4.214e^-4	0.823	UTR_3_PRIME Frq1
2R	15287806	2R_15287806_SNP [dm3] 2R_19400301_SNP [dm6]	C	T	4.215e^-4	0.823	SYNONYMOUS_CODING hts INTRON hts EXON CR43430	TF binding site mE1_TFBS_sens
3R	12370860	3R_12370860_SNP [dm3] 3R_16545138_SNP [dm6]	G	T	4.218e^-4	0.823	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2913529	3L_2913529_SNP [dm3] 3L_2913529_SNP [dm6]	C	A	4.221e^-4	0.823	INTRON Shab
2L	9829032	2L_9829032_SNP [dm3] 2L_9829032_SNP [dm6]	C	A	4.237e^-4	0.823	INTRON nAChRalpha6
2L	12227339	2L_12227339_SNP [dm3] 2L_12227339_SNP [dm6]	G	C	4.238e^-4	0.823	INTRON aret
3R	25985102	3R_25985102_SNP [dm3] 3R_30159380_SNP [dm6]	G	C	4.251e^-4	0.823	INTRON CG11498
2R	17157337	2R_17157337_SNP [dm3] 2R_21269832_SNP [dm6]	A	T	4.251e^-4	0.823	INTRON Rgk3
3L	4969760	3L_4969760_DEL [dm3] 3L_4969760_DEL [dm6]	CAC	C	4.265e^-4	0.823	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5825862	2L_5825862_SNP [dm3] 2L_5825862_SNP [dm6]	G	T	4.270e^-4	0.823	INTRON TrissinR
2L	8072102	2L_8072102_SNP [dm3] 2L_8072102_SNP [dm6]	A	C	4.271e^-4	0.823	NON_SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16745352	2R_16745352_SNP [dm3] 2R_20857847_SNP [dm6]	G	T	4.277e^-4	0.823	INTERGENIC
3R	13959413	3R_13959413_SNP [dm3] 3R_18133691_SNP [dm6]	A	T	4.279e^-4	0.823	UTR_3_PRIME sr
2L	9650326	2L_9650326_SNP [dm3] 2L_9650326_SNP [dm6]	C	T	4.281e^-4	0.823	SYNONYMOUS_CODING Apoltp
X	21837539	X_21837539_SNP [dm3] X_22435704_SNP [dm6]	C	A	4.282e^-4	0.823	INTERGENIC
3L	15338090	3L_15338090_SNP [dm3] 3L_15344990_SNP [dm6]	T	C	4.284e^-4	0.823	DOWNSTREAM Toll-6 INTERGENIC
3L	12321038	3L_12321038_SNP [dm3] 3L_12327938_SNP [dm6]	T	G	4.286e^-4	0.823	INTERGENIC
2L	9948925	2L_9948925_INS [dm3] 2L_9948925_INS [dm6]	T	TGT	4.287e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19617885	2R_19617885_SNP [dm3] 2R_23730362_SNP [dm6]	A	G	4.295e^-4	0.823	INTRON Sesn
3L	11137625	3L_11137625_SNP [dm3] 3L_11144525_SNP [dm6]	T	C	4.295e^-4	0.823	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17056543	2R_17056543_SNP [dm3] 2R_21169038_SNP [dm6]	C	T	4.300e^-4	0.823	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15262156	3L_15262156_SNP [dm3] 3L_15269056_SNP [dm6]	A	G	4.311e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13520526	2R_13520526_SNP [dm3] 2R_17633021_SNP [dm6]	G	T	4.314e^-4	0.823	SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_sens
3L	5769704	3L_5769704_SNP [dm3] 3L_5776604_SNP [dm6]	C	A	4.317e^-4	0.823	SYNONYMOUS_CODING vito DOWNSTREAM scny & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14219360	2L_14219360_SNP [dm3] 2L_14219360_SNP [dm6]	G	A	4.319e^-4	0.823	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8577638	2R_8577638_SNP [dm3] 2R_12690133_SNP [dm6]	T	G	4.323e^-4	0.823	UTR_3_PRIME Obp49a UPSTREAM CG30053
2R	8911116	2R_8911116_SNP [dm3] 2R_13023611_SNP [dm6]	G	C	4.327e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12370809	3R_12370809_SNP [dm3] 3R_16545087_SNP [dm6]	G	A	4.336e^-4	0.823	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6892519	2R_6892519_SNP [dm3] 2R_11005014_SNP [dm6]	A	T	4.349e^-4	0.823	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	14139840	2L_14139840_SNP [dm3] 2L_14139840_SNP [dm6]	C	G	4.359e^-4	0.823	INTRON CG17341
3L	10615102	3L_10615102_SNP [dm3] 3L_10622002_SNP [dm6]	C	G	4.361e^-4	0.823	INTERGENIC
X	4444103	X_4444103_SNP [dm3] X_4550070_SNP [dm6]	A	T	4.363e^-4	0.823	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
X	20364780	X_20364780_SNP [dm3] X_20493753_SNP [dm6]	T	G	4.367e^-4	0.823	INTRON RhoGAP19D
2L	18513558	2L_18513558_SNP [dm3] 2L_18513558_SNP [dm6]	T	A	4.376e^-4	0.823	DOWNSTREAM CG10178 INTERGENIC
3R	16869132	3R_16869132_SNP [dm3] 3R_21043410_SNP [dm6]	C	T	4.377e^-4	0.823	UPSTREAM Dhc93AB & 1 other INTERGENIC
2L	6532490	2L_6532490_SNP [dm3] 2L_6532490_SNP [dm6]	G	T	4.385e^-4	0.823	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21220389	3R_21220389_SNP [dm3] 3R_25394667_SNP [dm6]	G	C	4.391e^-4	0.823	INTRON Fur1
X	12174496	X_12174496_SNP [dm3] X_12280463_SNP [dm6]	G	C	4.392e^-4	0.823	INTRON Ten-a
2L	10463098	2L_10463098_SNP [dm3] 2L_10463098_SNP [dm6]	A	G	4.396e^-4	0.823	DOWNSTREAM RluA-1 & 1 other INTERGENIC
3R	21455907	3R_21455907_SNP [dm3] 3R_25630185_SNP [dm6]	T	G	4.402e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9949145	2L_9949145_SNP [dm3] 2L_9949145_SNP [dm6]	G	A	4.404e^-4	0.823	INTERGENIC
2L	7160901	2L_7160901_SNP [dm3] 2L_7160901_SNP [dm6]	T	C	4.405e^-4	0.823	INTERGENIC
3L	5713617	3L_5713617_SNP [dm3] 3L_5720517_SNP [dm6]	T	C	4.429e^-4	0.823	DOWNSTREAM snoRNA:Me18S-A1494 INTRON sif
3R	24358105	3R_24358105_SNP [dm3] 3R_28532383_SNP [dm6]	T	G	4.429e^-4	0.823	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	17047983	3R_17047983_SNP [dm3] 3R_21222261_SNP [dm6]	G	A	4.432e^-4	0.823	SYNONYMOUS_CODING Oga DOWNSTREAM CG3337	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16868534	3R_16868534_SNP [dm3] 3R_21042812_SNP [dm6]	C	A	4.437e^-4	0.823	UPSTREAM Dhc93AB INTERGENIC
3R	24358040	3R_24358040_SNP [dm3] 3R_28532318_SNP [dm6]	T	C	4.453e^-4	0.823	INTRON Ppn	TF binding site mE1_TFBS_chinmo

By genomic position
Variant impact
Gene name

PC2_Nutri_Score_Low phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results