DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.386e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.9894	0.0501

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2168 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	10359904	3R_10359904_SNP [dm3] 3R_14534182_SNP [dm6]	G	A	5.669e^-7	0.488	INTRON Pde6
3R	25956440	3R_25956440_SNP [dm3] 3R_30130718_SNP [dm6]	A	C	1.475e^-6	0.488	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25953010	3R_25953010_SNP [dm3] 3R_30127288_SNP [dm6]	A	G	1.607e^-6	0.488	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	1.732e^-6	0.488	INTRON sff
3R	25953104	3R_25953104_SNP [dm3] 3R_30127382_SNP [dm6]	A	T	1.993e^-6	0.488	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11217493	3R_11217493_SNP [dm3] 3R_15391771_SNP [dm6]	C	T	2.811e^-6	0.488	INTRON Rbp	TF binding site mE1_TFBS_cad
3R	25953203	3R_25953203_SNP [dm3] 3R_30127481_SNP [dm6]	A	G	3.468e^-6	0.488	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25952966	3R_25952966_SNP [dm3] 3R_30127244_SNP [dm6]	T	C	4.090e^-6	0.488	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17462108	2R_17462108_SNP [dm3] 2R_21574603_SNP [dm6]	C	T	4.181e^-6	0.488	INTRON CG10440
3R	25952830	3R_25952830_SNP [dm3] 3R_30127108_SNP [dm6]	T	C	4.309e^-6	0.488	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23253202	3R_23253202_SNP [dm3] 3R_27427480_SNP [dm6]	C	T	4.389e^-6	0.488	INTRON side
3L	11357121	3L_11357121_SNP [dm3] 3L_11364021_SNP [dm6]	G	T	4.698e^-6	0.488	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
2R	7497535	2R_7497535_SNP [dm3] 2R_11610030_SNP [dm6]	C	A	4.980e^-6	0.488	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13722301	3R_13722301_SNP [dm3] 3R_17896579_SNP [dm6]	T	A	5.006e^-6	0.488	INTRON Rim
3R	10360251	3R_10360251_SNP [dm3] 3R_14534529_SNP [dm6]	T	C	5.052e^-6	0.488	INTRON Pde6
3R	11323756	3R_11323756_SNP [dm3] 3R_15498034_SNP [dm6]	T	G	5.085e^-6	0.488	INTERGENIC
3L	551351	3L_551351_SNP [dm3] 3L_551351_SNP [dm6]	A	G	5.354e^-6	0.488	INTRON hipk	TF binding site BDTNP1_TFBS_dl
3L	11488657	3L_11488657_SNP [dm3] 3L_11495557_SNP [dm6]	C	A	5.433e^-6	0.488	UTR_3_PRIME chrb	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	25953305	3R_25953305_SNP [dm3] 3R_30127583_SNP [dm6]	A	G	5.935e^-6	0.488	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
2R	18455202	2R_18455202_SNP [dm3] 2R_22567697_SNP [dm6]	C	T	6.223e^-6	0.488	INTRON dnr1
X	5877626	X_5877626_SNP [dm3] X_5983593_SNP [dm6]	C	T	6.310e^-6	0.488	INTRON Grip
3R	22934976	3R_22934976_SNP [dm3] 3R_27109254_SNP [dm6]	A	G	6.598e^-6	0.488	SYNONYMOUS_CODING gb UPSTREAM CR45209
3R	5443035	3R_5443035_SNP [dm3] 3R_9617313_SNP [dm6]	A	G	6.812e^-6	0.488	INTRON CG8312
2L	3271697	2L_3271697_SNP [dm3] 2L_3271697_SNP [dm6]	A	T	7.204e^-6	0.488	UTR_3_PRIME CG3347
3L	941551	3L_941551_SNP [dm3] 3L_941551_SNP [dm6]	A	G	7.281e^-6	0.488	INTRON Glut1
2L	2247949	2L_2247949_DEL [dm3] 2L_2247949_DEL [dm6]	GC	G	7.675e^-6	0.488	DOWNSTREAM CR42859 INTERGENIC
3R	11443794	3R_11443794_INS [dm3] 3R_15618072_INS [dm6]	A	AA	7.695e^-6	0.488	INTERGENIC
3R	9153967	3R_9153967_SNP [dm3] 3R_13328245_SNP [dm6]	A	G	8.300e^-6	0.488	DOWNSTREAM PK2-R2 INTERGENIC
X	19765726	X_19765726_SNP [dm3] X_19871693_SNP [dm6]	G	T	8.381e^-6	0.488	INTRON Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13722160	3R_13722160_SNP [dm3] 3R_17896438_SNP [dm6]	T	A	8.472e^-6	0.488	INTRON Rim
2R	18455229	2R_18455229_SNP [dm3] 2R_22567724_SNP [dm6]	C	A	8.634e^-6	0.488	INTRON dnr1
3L	11191888	3L_11191888_SNP [dm3] 3L_11198788_SNP [dm6]	A	G	8.812e^-6	0.488	SYNONYMOUS_CODING Plod UPSTREAM CG7607	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13232326	2L_13232326_SNP [dm3] 2L_13232326_SNP [dm6]	T	C	8.851e^-6	0.488	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4511204	3L_4511204_SNP [dm3] 3L_4511204_SNP [dm6]	C	T	8.856e^-6	0.488	UTR_3_PRIME Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	14987341	3R_14987341_SNP [dm3] 3R_19161619_SNP [dm6]	G	C	9.276e^-6	0.497	SYNONYMOUS_CODING CG42359 INTRON CG42358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	20931584	3R_20931584_SNP [dm3] 3R_25105862_SNP [dm6]	G	A	1.070e^-5	0.545	SYNONYMOUS_CODING CG34027
3L	8751097	3L_8751097_SNP [dm3] 3L_8757997_SNP [dm6]	G	A	1.077e^-5	0.545	DOWNSTREAM CG6576 INTRON Fhos
3R	11160926	3R_11160926_SNP [dm3] 3R_15335204_SNP [dm6]	C	T	1.139e^-5	0.548	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3R	21341198	3R_21341198_SNP [dm3] 3R_25515476_SNP [dm6]	A	C	1.141e^-5	0.548	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4510238	3L_4510238_SNP [dm3] 3L_4510238_SNP [dm6]	T	A	1.291e^-5	0.605	DOWNSTREAM Tie INTERGENIC
3L	16055724	3L_16055724_SNP [dm3] 3L_16062624_SNP [dm6]	C	T	1.391e^-5	0.621	SYNONYMOUS_CODING Mbs
3R	21341184	3R_21341184_SNP [dm3] 3R_25515462_SNP [dm6]	T	C	1.410e^-5	0.621	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4510231	3L_4510231_SNP [dm3] 3L_4510231_SNP [dm6]	A	G	1.476e^-5	0.621	DOWNSTREAM Tie INTERGENIC
3L	20425634	3L_20425634_SNP [dm3] 3L_20432534_SNP [dm6]	T	A	1.484e^-5	0.621	UTR_5_PRIME Psn UPSTREAM Psn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20425790	3L_20425790_SNP [dm3] 3L_20432690_SNP [dm6]	T	C	1.490e^-5	0.621	UTR_5_PRIME Psn UPSTREAM Las	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7504304	2R_7504304_SNP [dm3] 2R_11616799_SNP [dm6]	C	G	1.549e^-5	0.628	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3R	23268755	3R_23268755_SNP [dm3] 3R_27443033_SNP [dm6]	T	C	1.629e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23252659	3R_23252659_SNP [dm3] 3R_27426937_SNP [dm6]	T	A	1.639e^-5	0.628	INTRON side
3R	5449451	3R_5449451_SNP [dm3] 3R_9623729_SNP [dm6]	T	C	1.678e^-5	0.628	SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23268180	3R_23268180_SNP [dm3] 3R_27442458_SNP [dm6]	T	A	1.690e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	17965732	3R_17965732_SNP [dm3] 3R_22140010_SNP [dm6]	C	A	1.770e^-5	0.628	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4245104	X_4245104_SNP [dm3] X_4351071_SNP [dm6]	A	T	1.773e^-5	0.628	INTRON norpA
3R	16064229	3R_16064229_SNP [dm3] 3R_20238507_SNP [dm6]	A	T	1.794e^-5	0.628	INTRON Nlg4
3L	7865777	3L_7865777_SNP [dm3] 3L_7872677_SNP [dm6]	A	G	1.828e^-5	0.628	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	23252573	3R_23252573_SNP [dm3] 3R_27426851_SNP [dm6]	C	T	1.841e^-5	0.628	INTRON side
3L	3487801	3L_3487801_SNP [dm3] 3L_3487801_SNP [dm6]	C	T	1.936e^-5	0.629	INTRON CG42324
3R	11161151	3R_11161151_SNP [dm3] 3R_15335429_SNP [dm6]	G	A	1.957e^-5	0.629	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_sens
3L	4510259	3L_4510259_SNP [dm3] 3L_4510259_SNP [dm6]	T	C	1.996e^-5	0.629	DOWNSTREAM Tie INTERGENIC
2R	9949237	2R_9949237_SNP [dm3] 2R_14061732_SNP [dm6]	A	T	2.014e^-5	0.629	UTR_3_PRIME Prosap
3L	11357109	3L_11357109_INS [dm3] 3L_11364009_INS [dm6]	A	ACAA	2.014e^-5	0.629	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
2L	3261343	2L_3261343_SNP [dm3] 2L_3261343_SNP [dm6]	C	T	2.197e^-5	0.664	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
X	9791472	X_9791472_DEL [dm3] X_9897439_DEL [dm6]	CAATTGAC	C	2.258e^-5	0.664	INTRON CG15249
3R	22938002	3R_22938002_SNP [dm3] 3R_27112280_SNP [dm6]	G	A	2.295e^-5	0.664	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	25956593	3R_25956593_SNP [dm3] 3R_30130871_SNP [dm6]	G	T	2.328e^-5	0.664	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11519565	2R_11519565_SNP [dm3] 2R_15632060_SNP [dm6]	T	C	2.332e^-5	0.664	INTRON CG42524
3R	14175484	3R_14175484_SNP [dm3] 3R_18349762_SNP [dm6]	T	C	2.389e^-5	0.664	INTRON CG15803
2L	4076112	2L_4076112_SNP [dm3] 2L_4076112_SNP [dm6]	C	G	2.400e^-5	0.664	UPSTREAM CR44984 INTRON ed
3L	6653492	3L_6653492_SNP [dm3] 3L_6660392_SNP [dm6]	A	C	2.429e^-5	0.664	INTERGENIC
3L	15863160	3L_15863160_SNP [dm3] 3L_15870060_SNP [dm6]	C	T	2.444e^-5	0.664	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
3L	941596	3L_941596_SNP [dm3] 3L_941596_SNP [dm6]	T	A	2.486e^-5	0.666	INTRON Glut1
2L	6310982	2L_6310982_SNP [dm3] 2L_6310982_SNP [dm6]	T	C	2.601e^-5	0.687	INTRON Ddr
2L	17519408	2L_17519408_SNP [dm3] 2L_17519408_SNP [dm6]	C	T	2.777e^-5	0.718	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7499416	2R_7499416_INS [dm3] 2R_11611911_INS [dm6]	G	GA	2.796e^-5	0.718	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	15900103	3L_15900103_SNP [dm3] 3L_15907003_SNP [dm6]	T	C	2.987e^-5	0.736	INTRON sff
3R	20314461	3R_20314461_SNP [dm3] 3R_24488739_SNP [dm6]	T	A	3.009e^-5	0.736	DOWNSTREAM mir-1017 INTRON nAChRalpha2
2L	2619347	2L_2619347_SNP [dm3] 2L_2619347_SNP [dm6]	A	T	3.063e^-5	0.736	UPSTREAM CG43403 INTERGENIC
3R	22947316	3R_22947316_SNP [dm3] 3R_27121594_SNP [dm6]	T	C	3.069e^-5	0.736	DOWNSTREAM CG6059 & 1 other INTERGENIC
3L	11357310	3L_11357310_SNP [dm3] 3L_11364210_SNP [dm6]	G	A	3.094e^-5	0.736	UPSTREAM CR45036 INTRON CG6163
3R	13589972	3R_13589972_SNP [dm3] 3R_17764250_SNP [dm6]	C	T	3.138e^-5	0.736	INTERGENIC
3L	15855622	3L_15855622_SNP [dm3] 3L_15862522_SNP [dm6]	G	T	3.173e^-5	0.736	DOWNSTREAM pHCl INTRON pHCl
X	5877684	X_5877684_SNP [dm3] X_5983651_SNP [dm6]	A	T	3.180e^-5	0.736	INTRON Grip
3R	26106219	3R_26106219_SNP [dm3] 3R_30280497_SNP [dm6]	G	A	3.305e^-5	0.745	INTRON hdc
3L	15837750	3L_15837750_SNP [dm3] 3L_15844650_SNP [dm6]	G	T	3.329e^-5	0.745	UPSTREAM CG32150 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6311047	2L_6311047_SNP [dm3] 2L_6311047_SNP [dm6]	G	A	3.339e^-5	0.745	INTRON Ddr
2R	9965586	2R_9965586_SNP [dm3] 2R_14078081_SNP [dm6]	T	C	3.426e^-5	0.753	INTRON Prosap
3L	6652430	3L_6652430_SNP [dm3] 3L_6659330_SNP [dm6]	T	C	3.455e^-5	0.753	INTERGENIC
3R	17924047	3R_17924047_SNP [dm3] 3R_22098325_SNP [dm6]	C	T	3.619e^-5	0.78	INTRON CG5778
X	8415712	X_8415712_SNP [dm3] X_8521679_SNP [dm6]	A	C	3.764e^-5	0.78	INTRON Nrg
3L	15899108	3L_15899108_SNP [dm3] 3L_15906008_SNP [dm6]	T	C	3.852e^-5	0.78	SYNONYMOUS_CODING sff
2L	10185439	2L_10185439_SNP [dm3] 2L_10185439_SNP [dm6]	C	T	3.866e^-5	0.78	INTRON Sur	TF binding site mE1_TFBS_inv
3L	7486056	3L_7486056_SNP [dm3] 3L_7492956_SNP [dm6]	T	G	3.954e^-5	0.78	NON_SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
X	8163625	X_8163625_SNP [dm3] X_8269592_SNP [dm6]	G	A	4.002e^-5	0.78	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
2R	8873309	2R_8873309_SNP [dm3] 2R_12985804_SNP [dm6]	C	A	4.172e^-5	0.78	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21341152	3R_21341152_SNP [dm3] 3R_25515430_SNP [dm6]	A	T	4.189e^-5	0.78	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2510953	3L_2510953_SNP [dm3] 3L_2510953_SNP [dm6]	T	G	4.238e^-5	0.78	INTRON Spn
2R	18704014	2R_18704014_SNP [dm3] 2R_22816509_SNP [dm6]	C	G	4.244e^-5	0.78	UTR_5_PRIME CG30271 UPSTREAM CG30271 DOWNSTREAM stl
3L	6652635	3L_6652635_SNP [dm3] 3L_6659535_SNP [dm6]	G	A	4.277e^-5	0.78	INTERGENIC
2L	2738238	2L_2738238_SNP [dm3] 2L_2738238_SNP [dm6]	G	C	4.295e^-5	0.78	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2738440	2L_2738440_SNP [dm3] 2L_2738440_SNP [dm6]	C	T	4.332e^-5	0.78	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_sens
2L	2738443	2L_2738443_SNP [dm3] 2L_2738443_SNP [dm6]	C	T	4.332e^-5	0.78	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689
3R	23268666	3R_23268666_SNP [dm3] 3R_27442944_SNP [dm6]	C	T	4.333e^-5	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8871353	2R_8871353_SNP [dm3] 2R_12983848_SNP [dm6]	A	T	4.334e^-5	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9732682	2R_9732682_SNP [dm3] 2R_13845177_SNP [dm6]	C	A	4.355e^-5	0.78	INTRON Syngr	TF binding site BDTNP1_TFBS_dl
3L	18090569	3L_18090569_DEL [dm3] 3L_18097469_DEL [dm6]	GCCCCAAAATACCAAAATG...	G	4.380e^-5	0.78	INTRON CG13698
X	8415765	X_8415765_SNP [dm3] X_8521732_SNP [dm6]	T	A	4.483e^-5	0.78	INTRON Nrg
3L	15855616	3L_15855616_SNP [dm3] 3L_15862516_SNP [dm6]	G	A	4.483e^-5	0.78	DOWNSTREAM pHCl INTRON pHCl
3R	10652408	3R_10652408_SNP [dm3] 3R_14826686_SNP [dm6]	C	T	4.498e^-5	0.78	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11357355	3L_11357355_SNP [dm3] 3L_11364255_SNP [dm6]	G	A	4.602e^-5	0.78	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
3R	11160929	3R_11160929_SNP [dm3] 3R_15335207_SNP [dm6]	T	C	4.626e^-5	0.78	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3R	9215634	3R_9215634_SNP [dm3] 3R_13389912_SNP [dm6]	A	C	4.699e^-5	0.78	INTRON CCHa2
X	4242821	X_4242821_SNP [dm3] X_4348788_SNP [dm6]	T	G	4.731e^-5	0.78	INTRON norpA
X	5966984	X_5966984_DEL [dm3] X_6072951_DEL [dm6]	AAATA	A	4.741e^-5	0.78	UTR_5_PRIME Tsp5D INTRON Tsp5D
3R	16794218	3R_16794218_SNP [dm3] 3R_20968496_SNP [dm6]	C	T	4.753e^-5	0.78	INTRON Atpalpha
3R	9154859	3R_9154859_SNP [dm3] 3R_13329137_SNP [dm6]	T	C	4.926e^-5	0.78	UTR_3_PRIME PK2-R2
2R	14575815	2R_14575815_SNP [dm3] 2R_18688310_SNP [dm6]	G	C	4.928e^-5	0.78	UTR_5_PRIME Sik3 UTR_3_PRIME CG42855 UPSTREAM Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6759885	2R_6759885_DEL [dm3] 2R_10872380_DEL [dm6]	GTAAG	A	4.950e^-5	0.78	INTRON CG30015
3L	14501516	3L_14501516_SNP [dm3] 3L_14508416_SNP [dm6]	G	A	5.034e^-5	0.78	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7599415	3L_7599415_SNP [dm3] 3L_7606315_SNP [dm6]	A	T	5.101e^-5	0.78	INTRON CG33275
2L	13232320	2L_13232320_SNP [dm3] 2L_13232320_SNP [dm6]	T	C	5.111e^-5	0.78	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5467399	3R_5467399_SNP [dm3] 3R_9641677_SNP [dm6]	C	T	5.118e^-5	0.78	INTRON Dh44
2L	11609837	2L_11609837_SNP [dm3] 2L_11609837_SNP [dm6]	C	A	5.231e^-5	0.78	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
X	20229578	X_20229578_SNP [dm3] X_20358551_SNP [dm6]	G	A	5.249e^-5	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3012222	2R_3012222_SNP [dm3] 2R_7124717_SNP [dm6]	G	A	5.251e^-5	0.78	INTRON esn	TF binding site mE1_TFBS_chinmo
X	20024770	X_20024770_SNP [dm3] X_20130737_SNP [dm6]	C	T	5.259e^-5	0.78	UTR_3_PRIME CG42582
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	5.264e^-5	0.78	UPSTREAM Cbp53E INTERGENIC
2L	17697510	2L_17697510_SNP [dm3] 2L_17697510_SNP [dm6]	A	T	5.290e^-5	0.78	INTRON CadN
3R	21056028	3R_21056028_SNP [dm3] 3R_25230306_SNP [dm6]	G	T	5.420e^-5	0.78	INTRON Cad96Cb
2R	10867728	2R_10867728_SNP [dm3] 2R_14980223_SNP [dm6]	T	A	5.440e^-5	0.78	UTR_3_PRIME ckn
X	7883004	X_7883004_SNP [dm3] X_7988971_SNP [dm6]	T	G	5.485e^-5	0.78	INTERGENIC
3L	9465775	3L_9465775_SNP [dm3] 3L_9472675_SNP [dm6]	G	T	5.501e^-5	0.78	DOWNSTREAM CG44838 INTRON CG44838
X	16220389	X_16220389_SNP [dm3] X_16326356_SNP [dm6]	A	G	5.507e^-5	0.78	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17318802	2R_17318802_SNP [dm3] 2R_21431297_SNP [dm6]	C	T	5.537e^-5	0.78	INTRON Sdc
2L	12580828	2L_12580828_DEL [dm3] 2L_12580828_DEL [dm6]	CC	C	5.615e^-5	0.78	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	16837858	2R_16837858_SNP [dm3] 2R_20950353_SNP [dm6]	A	T	5.695e^-5	0.78	INTRON CG33704	TF binding site BDTNP1_TFBS_da
2R	16837860	2R_16837860_DEL [dm3] 2R_20950355_DEL [dm6]	GTGATATCATTAATCAC...	G	5.695e^-5	0.78	INTRON CG33704	TF binding site BDTNP1_TFBS_da
3L	7864031	3L_7864031_INS [dm3] 3L_7870931_INS [dm6]	A	TTTATG	5.715e^-5	0.78	INTRON CG32365
2R	11686509	2R_11686509_SNP [dm3] 2R_15799004_SNP [dm6]	C	T	5.819e^-5	0.78	INTRON Zasp52 & 1 other
3R	25956467	3R_25956467_SNP [dm3] 3R_30130745_SNP [dm6]	C	T	5.917e^-5	0.78	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13541073	2L_13541073_SNP [dm3] 2L_13541073_SNP [dm6]	A	T	6.071e^-5	0.78	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
2R	11688936	2R_11688936_SNP [dm3] 2R_15801431_SNP [dm6]	C	A	6.189e^-5	0.78	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
X	5877627	X_5877627_SNP [dm3] X_5983594_SNP [dm6]	G	A	6.217e^-5	0.78	INTRON Grip
3L	12102598	3L_12102598_SNP [dm3] 3L_12109498_SNP [dm6]	A	T	6.263e^-5	0.78	INTERGENIC
3R	15165466	3R_15165466_SNP [dm3] 3R_19339744_SNP [dm6]	G	C	6.409e^-5	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	4242823	X_4242823_SNP [dm3] X_4348790_SNP [dm6]	C	A	6.425e^-5	0.78	INTRON norpA
3R	23269692	3R_23269692_SNP [dm3] 3R_27443970_SNP [dm6]	C	T	6.507e^-5	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17832214	3L_17832214_SNP [dm3] 3L_17839114_SNP [dm6]	G	T	6.532e^-5	0.78	UTR_3_PRIME Grd DOWNSTREAM CG5577
3L	14371783	3L_14371783_SNP [dm3] 3L_14378683_SNP [dm6]	G	A	6.564e^-5	0.78	INTERGENIC
3R	5467401	3R_5467401_SNP [dm3] 3R_9641679_SNP [dm6]	A	C	6.565e^-5	0.78	INTRON Dh44
2R	8873076	2R_8873076_SNP [dm3] 2R_12985571_SNP [dm6]	G	T	6.613e^-5	0.78	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18122208	2L_18122208_SNP [dm3] 2L_18122208_SNP [dm6]	A	G	6.707e^-5	0.78	UPSTREAM CG5758 INTRON CG5758
3R	5449631	3R_5449631_SNP [dm3] 3R_9623909_SNP [dm6]	A	G	6.761e^-5	0.78	SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20800563	3R_20800563_SNP [dm3] 3R_24974841_SNP [dm6]	C	T	6.826e^-5	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4708152	3R_4708152_SNP [dm3] 3R_8882430_SNP [dm6]	C	T	6.868e^-5	0.78	INTRON pyd
2R	9837619	2R_9837619_SNP [dm3] 2R_13950114_SNP [dm6]	A	G	6.883e^-5	0.78	INTRON AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7745153	3L_7745153_SNP [dm3] 3L_7752053_SNP [dm6]	C	A	7.018e^-5	0.78	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25948812	3R_25948812_SNP [dm3] 3R_30123090_SNP [dm6]	G	A	7.027e^-5	0.78	UTR_5_PRIME CG45072 DOWNSTREAM CG45073
2R	18598851	2R_18598851_SNP [dm3] 2R_22711346_SNP [dm6]	A	T	7.028e^-5	0.78	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2L	2263007	2L_2263007_SNP [dm3] 2L_2263007_SNP [dm6]	T	A	7.032e^-5	0.78	UPSTREAM CG4270 INTERGENIC
3L	8719565	3L_8719565_SNP [dm3] 3L_8726465_SNP [dm6]	C	T	7.057e^-5	0.78	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17534329	3L_17534329_SNP [dm3] 3L_17541229_SNP [dm6]	A	T	7.067e^-5	0.78	INTRON Nedd4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10621287	2R_10621287_SNP [dm3] 2R_14733782_SNP [dm6]	T	G	7.122e^-5	0.78	INTERGENIC
3R	11160827	3R_11160827_SNP [dm3] 3R_15335105_SNP [dm6]	T	C	7.128e^-5	0.78	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
X	5877660	X_5877660_SNP [dm3] X_5983627_SNP [dm6]	C	A	7.146e^-5	0.78	INTRON Grip
3L	10214114	3L_10214114_SNP [dm3] 3L_10221014_SNP [dm6]	A	G	7.236e^-5	0.78	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
3R	25948794	3R_25948794_SNP [dm3] 3R_30123072_SNP [dm6]	T	G	7.237e^-5	0.78	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3L	4899410	3L_4899410_SNP [dm3] 3L_4899410_SNP [dm6]	T	C	7.276e^-5	0.78	DOWNSTREAM CG13705 INTRON CG13704
3L	4899437	3L_4899437_DEL [dm3] 3L_4899437_DEL [dm6]	AGG	A	7.276e^-5	0.78	DOWNSTREAM CG13705 INTRON CG13704
X	19206708	X_19206708_SNP [dm3] X_19312675_SNP [dm6]	C	A	7.296e^-5	0.78	NON_SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
3R	25953098	3R_25953098_SNP [dm3] 3R_30127376_SNP [dm6]	C	T	7.525e^-5	0.78	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19221538	3R_19221538_SNP [dm3] 3R_23395816_SNP [dm6]	A	G	7.531e^-5	0.78	INTERGENIC
3R	22871913	3R_22871913_SNP [dm3] 3R_27046191_SNP [dm6]	T	A	7.538e^-5	0.78	INTRON RYa-R
2R	18738060	2R_18738060_SNP [dm3] 2R_22850537_SNP [dm6]	A	G	7.538e^-5	0.78	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
2R	19096951	2R_19096951_SNP [dm3] 2R_23209428_SNP [dm6]	T	C	7.575e^-5	0.78	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
2R	18737643	2R_18737643_SNP [dm3] 2R_22850120_SNP [dm6]	A	T	7.638e^-5	0.78	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3L	6650211	3L_6650211_SNP [dm3] 3L_6657111_SNP [dm6]	C	A	7.659e^-5	0.78	INTERGENIC
3R	22939719	3R_22939719_SNP [dm3] 3R_27113997_SNP [dm6]	G	A	7.664e^-5	0.78	SYNONYMOUS_CODING CG5815
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	7.668e^-5	0.78	INTRON dpr4
X	3124560	X_3124560_SNP [dm3] X_3230527_SNP [dm6]	A	G	7.681e^-5	0.78	INTRON dnc
2R	15141525	2R_15141525_SNP [dm3] 2R_19254020_SNP [dm6]	T	C	7.691e^-5	0.78	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14501521	3L_14501521_INS [dm3] 3L_14508421_INS [dm6]	C	CACC	7.693e^-5	0.78	CODON_INSERTION bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9023100	2R_9023100_SNP [dm3] 2R_13135595_SNP [dm6]	T	C	7.695e^-5	0.78	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3L	941524	3L_941524_SNP [dm3] 3L_941524_SNP [dm6]	G	T	7.711e^-5	0.78	INTRON Glut1
3R	25806545	3R_25806545_SNP [dm3] 3R_29980823_SNP [dm6]	A	G	7.753e^-5	0.78	INTERGENIC
2R	19967446	2R_19967446_DEL [dm3] 2R_24079923_DEL [dm6]	AACCATGATAACCAAACTCT...	A	7.766e^-5	0.78	UPSTREAM CG13564 INTRON CG10339
3L	3927541	3L_3927541_SNP [dm3] 3L_3927541_SNP [dm6]	T	A	7.789e^-5	0.78	INTRON Eip63F-1
3R	10896892	3R_10896892_SNP [dm3] 3R_15071170_SNP [dm6]	T	C	7.808e^-5	0.78	INTRON dpr9
3R	11160977	3R_11160977_SNP [dm3] 3R_15335255_SNP [dm6]	C	T	7.816e^-5	0.78	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3L	15893319	3L_15893319_SNP [dm3] 3L_15900219_SNP [dm6]	G	C	7.822e^-5	0.78	UTR_3_PRIME sff
2R	2790728	2R_2790728_SNP [dm3] 2R_6903223_SNP [dm6]	T	C	7.910e^-5	0.784	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21892908	X_21892908_SNP [dm3] X_22491072_SNP [dm6]	C	G	7.944e^-5	0.784	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
3R	11709513	3R_11709513_SNP [dm3] 3R_15883791_SNP [dm6]	T	C	8.090e^-5	0.785	INTERGENIC
X	8163844	X_8163844_SNP [dm3] X_8269811_SNP [dm6]	C	G	8.234e^-5	0.785	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3L	18949536	3L_18949536_SNP [dm3] 3L_18956436_SNP [dm6]	A	C	8.239e^-5	0.785	INTERGENIC
3L	3163641	3L_3163641_SNP [dm3] 3L_3163641_SNP [dm6]	T	C	8.303e^-5	0.785	SYNONYMOUS_CODING rasp DOWNSTREAM Asciz
3L	3165167	3L_3165167_SNP [dm3] 3L_3165167_SNP [dm6]	G	A	8.303e^-5	0.785	START_GAINED Asciz UTR_5_PRIME Asciz UPSTREAM CG32280 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	8.318e^-5	0.785	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14983084	3R_14983084_SNP [dm3] 3R_19157362_SNP [dm6]	G	A	8.320e^-5	0.785	UTR_5_PRIME nos UPSTREAM CG11779 INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	14478697	2L_14478697_SNP [dm3] 2L_14478697_SNP [dm6]	G	A	8.329e^-5	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10217592	3L_10217592_SNP [dm3] 3L_10224492_SNP [dm6]	G	T	8.332e^-5	0.785	INTRON scramb1
X	20024782	X_20024782_SNP [dm3] X_20130749_SNP [dm6]	A	G	8.399e^-5	0.786	UTR_3_PRIME CG42582
2L	6820740	2L_6820740_DEL [dm3] 2L_6820740_DEL [dm6]	AA	T	8.426e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18743069	3L_18743069_SNP [dm3] 3L_18749969_SNP [dm6]	C	T	8.485e^-5	0.787	SYNONYMOUS_CODING Atg3 DOWNSTREAM ftz-f1
3R	22935006	3R_22935006_SNP [dm3] 3R_27109284_SNP [dm6]	G	T	8.521e^-5	0.787	SYNONYMOUS_CODING gb UPSTREAM CR45209
3L	19226387	3L_19226387_SNP [dm3] 3L_19233287_SNP [dm6]	A	G	8.743e^-5	0.795	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10858171	2R_10858171_SNP [dm3] 2R_14970666_SNP [dm6]	T	A	8.765e^-5	0.795	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	11991507	2R_11991507_SNP [dm3] 2R_16104002_SNP [dm6]	G	T	8.817e^-5	0.795	INTRON Rho1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3284659	2L_3284659_SNP [dm3] 2L_3284659_SNP [dm6]	A	T	8.820e^-5	0.795	INTERGENIC
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	8.822e^-5	0.795	INTERGENIC
3L	13116135	3L_13116135_SNP [dm3] 3L_13123035_SNP [dm6]	T	G	8.931e^-5	0.797	INTERGENIC
3R	9154848	3R_9154848_SNP [dm3] 3R_13329126_SNP [dm6]	G	A	8.974e^-5	0.797	UTR_3_PRIME PK2-R2
X	5967063	X_5967063_SNP [dm3] X_6073030_SNP [dm6]	G	T	8.975e^-5	0.797	UPSTREAM Tsp5D INTRON Tsp5D
3R	5467411	3R_5467411_SNP [dm3] 3R_9641689_SNP [dm6]	C	A	9.149e^-5	0.809	INTRON Dh44
2R	11624707	2R_11624707_SNP [dm3] 2R_15737202_SNP [dm6]	C	G	9.198e^-5	0.809	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12594308	3L_12594308_SNP [dm3] 3L_12601208_SNP [dm6]	G	A	9.315e^-5	0.816	INTERGENIC
3L	10566031	3L_10566031_SNP [dm3] 3L_10572931_SNP [dm6]	T	A	9.431e^-5	0.822	INTRON A2bp1
3R	12970599	3R_12970599_SNP [dm3] 3R_17144877_SNP [dm6]	G	T	9.558e^-5	0.825	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	11159801	3R_11159801_SNP [dm3] 3R_15334079_SNP [dm6]	G	C	9.607e^-5	0.825	SYNONYMOUS_CODING Sra-1 UPSTREAM FK506-bp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4510272	3L_4510272_SNP [dm3] 3L_4510272_SNP [dm6]	A	G	9.637e^-5	0.825	DOWNSTREAM Tie INTERGENIC
2R	436154	2R_436154_SNP [dm3] 2R_4548649_SNP [dm6]	G	A	9.644e^-5	0.825	INTRON Stlk	transposable element FlyBase
3R	22937998	3R_22937998_SNP [dm3] 3R_27112276_SNP [dm6]	G	A	9.768e^-5	0.83	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	6790331	X_6790331_SNP [dm3] X_6896298_SNP [dm6]	C	T	9.787e^-5	0.83	INTERGENIC
3L	18741728	3L_18741728_SNP [dm3] 3L_18748628_SNP [dm6]	C	G	9.850e^-5	0.831	UPSTREAM Atg3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2738432	2L_2738432_SNP [dm3] 2L_2738432_SNP [dm6]	C	A	9.969e^-5	0.831	DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19096950	2R_19096950_SNP [dm3] 2R_23209427_SNP [dm6]	G	A	1.000e^-4	0.831	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3R	9417903	3R_9417903_SNP [dm3] 3R_13592181_SNP [dm6]	C	T	1.000e^-4	0.831	UTR_3_PRIME CG14369
3L	4692539	3L_4692539_SNP [dm3] 3L_4692539_SNP [dm6]	T	C	1.007e^-4	0.831	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11443123	3R_11443123_SNP [dm3] 3R_15617401_SNP [dm6]	G	A	1.009e^-4	0.831	INTERGENIC
X	5877675	X_5877675_INS [dm3] X_5983642_INS [dm6]	T	TCTTGGTCTG	1.012e^-4	0.831	INTRON Grip
3R	23251036	3R_23251036_SNP [dm3] 3R_27425314_SNP [dm6]	T	C	1.019e^-4	0.831	INTRON side
2R	9733009	2R_9733009_SNP [dm3] 2R_13845504_SNP [dm6]	T	A	1.023e^-4	0.831	UPSTREAM CG30484 INTRON Syngr	TF binding site BDTNP1_TFBS_dl
3L	2725843	3L_2725843_SNP [dm3] 3L_2725843_SNP [dm6]	G	A	1.028e^-4	0.831	INTRON Mrtf
3R	22018973	3R_22018973_SNP [dm3] 3R_26193251_SNP [dm6]	G	T	1.036e^-4	0.831	INTERGENIC
X	19715076	X_19715076_SNP [dm3] X_19821043_SNP [dm6]	C	A	1.043e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16064167	3R_16064167_SNP [dm3] 3R_20238445_SNP [dm6]	G	T	1.050e^-4	0.831	INTRON Nlg4
3L	18250817	3L_18250817_SNP [dm3] 3L_18257717_SNP [dm6]	T	G	1.053e^-4	0.831	INTERGENIC
2L	9552272	2L_9552272_SNP [dm3] 2L_9552272_SNP [dm6]	A	G	1.068e^-4	0.831	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1034032	2L_1034032_SNP [dm3] 2L_1034032_SNP [dm6]	A	G	1.069e^-4	0.831	NON_SYNONYMOUS_CODING IA-2
2R	16875177	2R_16875177_SNP [dm3] 2R_20987672_SNP [dm6]	A	G	1.070e^-4	0.831	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10010850	2R_10010850_SNP [dm3] 2R_14123345_SNP [dm6]	C	T	1.070e^-4	0.831	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	3163695	3L_3163695_SNP [dm3] 3L_3163695_SNP [dm6]	T	A	1.074e^-4	0.831	SYNONYMOUS_CODING rasp DOWNSTREAM Asciz	TF binding site BDTNP1_TFBS_twi
2L	5256132	2L_5256132_SNP [dm3] 2L_5256132_SNP [dm6]	A	T	1.077e^-4	0.831	INTRON tkv	TF binding site mE1_TFBS_cad
3L	15899451	3L_15899451_SNP [dm3] 3L_15906351_SNP [dm6]	G	T	1.081e^-4	0.831	INTRON sff
3L	7486035	3L_7486035_SNP [dm3] 3L_7492935_SNP [dm6]	G	T	1.082e^-4	0.831	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
3L	7486119	3L_7486119_SNP [dm3] 3L_7493019_SNP [dm6]	T	A	1.090e^-4	0.831	NON_SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
2R	18495783	2R_18495783_SNP [dm3] 2R_22608278_SNP [dm6]	A	T	1.098e^-4	0.831	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21341135	3R_21341135_SNP [dm3] 3R_25515413_SNP [dm6]	A	T	1.103e^-4	0.831	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22946481	3R_22946481_SNP [dm3] 3R_27120759_SNP [dm6]	T	C	1.104e^-4	0.831	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2793912	2R_2793912_SNP [dm3] 2R_6906407_SNP [dm6]	A	G	1.114e^-4	0.831	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2R	7504178	2R_7504178_SNP [dm3] 2R_11616673_SNP [dm6]	G	C	1.117e^-4	0.831	UPSTREAM tou DOWNSTREAM Egm EXON CR43907	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10029525	3L_10029525_SNP [dm3] 3L_10036425_SNP [dm6]	A	G	1.129e^-4	0.831	INTRON dpr6
2L	3271683	2L_3271683_SNP [dm3] 2L_3271683_SNP [dm6]	C	A	1.131e^-4	0.831	UTR_3_PRIME CG3347
3L	15751338	3L_15751338_SNP [dm3] 3L_15758238_SNP [dm6]	T	A	1.134e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19964907	2R_19964907_SNP [dm3] 2R_24077384_SNP [dm6]	T	C	1.139e^-4	0.831	SPLICE_SITE_REGION Mlp60A DOWNSTREAM CG10339 INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25953482	3R_25953482_SNP [dm3] 3R_30127760_SNP [dm6]	G	A	1.149e^-4	0.831	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	13696298	3R_13696298_SNP [dm3] 3R_17870576_SNP [dm6]	T	C	1.155e^-4	0.831	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	17965772	3R_17965772_SNP [dm3] 3R_22140050_SNP [dm6]	G	C	1.162e^-4	0.831	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25099647	3R_25099647_SNP [dm3] 3R_29273925_SNP [dm6]	C	T	1.164e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22517821	3R_22517821_SNP [dm3] 3R_26692099_SNP [dm6]	T	C	1.165e^-4	0.831	DOWNSTREAM TwdlQ INTERGENIC
3R	15372458	3R_15372458_SNP [dm3] 3R_19546736_SNP [dm6]	A	T	1.170e^-4	0.831	INTRON Dys
3L	15231152	3L_15231152_SNP [dm3] 3L_15238052_SNP [dm6]	G	A	1.173e^-4	0.831	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3068917	X_3068917_SNP [dm3] X_3174884_SNP [dm6]	G	T	1.174e^-4	0.831	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	1722650	2L_1722650_SNP [dm3] 2L_1722650_SNP [dm6]	C	T	1.185e^-4	0.831	INTRON Rim2
3L	550946	3L_550946_SNP [dm3] 3L_550946_SNP [dm6]	C	A	1.185e^-4	0.831	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4936744	2L_4936744_SNP [dm3] 2L_4936744_SNP [dm6]	G	A	1.189e^-4	0.831	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	26106216	3R_26106216_SNP [dm3] 3R_30280494_SNP [dm6]	T	A	1.197e^-4	0.831	INTRON hdc
3R	9135713	3R_9135713_INS [dm3] 3R_13309991_INS [dm6]	C	CATGCTTC	1.199e^-4	0.831	INTRON CG32473
2L	8984990	2L_8984990_SNP [dm3] 2L_8984990_SNP [dm6]	C	G	1.201e^-4	0.831	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11356879	3L_11356879_SNP [dm3] 3L_11363779_SNP [dm6]	T	A	1.215e^-4	0.831	SYNONYMOUS_CODING CG6163 UPSTREAM CR45036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11349715	3L_11349715_SNP [dm3] 3L_11356615_SNP [dm6]	T	C	1.225e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10050126	2R_10050126_SNP [dm3] 2R_14162621_SNP [dm6]	G	T	1.227e^-4	0.831	SYNONYMOUS_CODING O-fut1 DOWNSTREAM Tango7	TF binding site mE1_TFBS_cad
2R	9830742	2R_9830742_SNP [dm3] 2R_13943237_SNP [dm6]	C	A	1.228e^-4	0.831	SYNONYMOUS_CODING DJ-1alpha DOWNSTREAM AGO1	TF binding site mE1_TFBS_inv
3R	16064163	3R_16064163_SNP [dm3] 3R_20238441_SNP [dm6]	G	A	1.232e^-4	0.831	INTRON Nlg4
3L	8750828	3L_8750828_SNP [dm3] 3L_8757728_SNP [dm6]	C	T	1.236e^-4	0.831	DOWNSTREAM CG6576 INTRON Fhos
2R	19096909	2R_19096909_SNP [dm3] 2R_23209386_SNP [dm6]	C	T	1.238e^-4	0.831	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3R	14175470	3R_14175470_SNP [dm3] 3R_18349748_SNP [dm6]	C	T	1.247e^-4	0.831	INTRON CG15803
3L	6653488	3L_6653488_SNP [dm3] 3L_6660388_SNP [dm6]	C	A	1.251e^-4	0.831	INTERGENIC
3R	22938720	3R_22938720_SNP [dm3] 3R_27112998_SNP [dm6]	A	G	1.255e^-4	0.831	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4899378	3L_4899378_SNP [dm3] 3L_4899378_SNP [dm6]	T	C	1.258e^-4	0.831	DOWNSTREAM CG13705 INTRON CG13704
3L	21854585	3L_21854585_SNP [dm3] 3L_21861485_SNP [dm6]	A	C	1.259e^-4	0.831	INTRON mub
3L	10824746	3L_10824746_SNP [dm3] 3L_10831646_SNP [dm6]	C	A	1.270e^-4	0.831	INTERGENIC
2R	4630532	2R_4630532_SNP [dm3] 2R_8743027_SNP [dm6]	A	G	1.274e^-4	0.831	INTRON CG8740
3L	2483401	3L_2483401_SNP [dm3] 3L_2483401_SNP [dm6]	T	A	1.278e^-4	0.831	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21971987	3R_21971987_SNP [dm3] 3R_26146265_SNP [dm6]	T	A	1.284e^-4	0.831	INTERGENIC
3R	14993307	3R_14993307_SNP [dm3] 3R_19167585_SNP [dm6]	C	G	1.301e^-4	0.831	INTRON sqz
3R	14993376	3R_14993376_SNP [dm3] 3R_19167654_SNP [dm6]	C	T	1.301e^-4	0.831	INTRON sqz	TF binding site mE1_TFBS_cad
3L	15837789	3L_15837789_SNP [dm3] 3L_15844689_SNP [dm6]	T	C	1.308e^-4	0.831	UPSTREAM CG32150 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8366817	3L_8366817_SNP [dm3] 3L_8373717_SNP [dm6]	C	T	1.312e^-4	0.831	INTRON ImpE1
X	19357909	X_19357909_SNP [dm3] X_19463876_SNP [dm6]	T	C	1.313e^-4	0.831	INTRON kek5
3L	18250798	3L_18250798_SNP [dm3] 3L_18257698_SNP [dm6]	A	G	1.314e^-4	0.831	INTERGENIC
3L	17980444	3L_17980444_INS [dm3] 3L_17987344_INS [dm6]	A	AC	1.317e^-4	0.831	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5729458	X_5729458_SNP [dm3] X_5835425_SNP [dm6]	T	A	1.339e^-4	0.831	INTRON CG15765
3R	13931628	3R_13931628_SNP [dm3] 3R_18105906_SNP [dm6]	C	T	1.341e^-4	0.831	INTRON sr
3R	11355721	3R_11355721_SNP [dm3] 3R_15529999_SNP [dm6]	A	G	1.343e^-4	0.831	DOWNSTREAM CG31296 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9146112	3R_9146112_SNP [dm3] 3R_13320390_SNP [dm6]	A	G	1.348e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7277676	2L_7277676_SNP [dm3] 2L_7277676_SNP [dm6]	A	G	1.353e^-4	0.831	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3L	2726104	3L_2726104_SNP [dm3] 3L_2726104_SNP [dm6]	G	T	1.354e^-4	0.831	INTRON Mrtf
3L	18244748	3L_18244748_SNP [dm3] 3L_18251648_SNP [dm6]	G	A	1.355e^-4	0.831	UPSTREAM CheA75a INTERGENIC
3R	11120988	3R_11120988_SNP [dm3] 3R_15295266_SNP [dm6]	C	A	1.366e^-4	0.831	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1
3R	11120990	3R_11120990_SNP [dm3] 3R_15295268_SNP [dm6]	A	T	1.366e^-4	0.831	SYNONYMOUS_CODING Tm1 INTRON Tm1
X	7685937	X_7685937_SNP [dm3] X_7791904_SNP [dm6]	A	C	1.367e^-4	0.831	INTERGENIC
3L	8158134	3L_8158134_SNP [dm3] 3L_8165034_SNP [dm6]	A	T	1.369e^-4	0.831	UPSTREAM CG13675 INTRON CG13675
3R	25958233	3R_25958233_SNP [dm3] 3R_30132511_SNP [dm6]	A	T	1.377e^-4	0.831	UPSTREAM CG31029 DOWNSTREAM Tpi INTERGENIC
2R	18481060	2R_18481060_SNP [dm3] 2R_22593555_SNP [dm6]	T	C	1.384e^-4	0.831	UPSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13000119	2R_13000119_SNP [dm3] 2R_17112614_SNP [dm6]	T	A	1.394e^-4	0.831	INTRON CG15611
3R	11017845	3R_11017845_SNP [dm3] 3R_15192123_SNP [dm6]	G	T	1.395e^-4	0.831	SYNONYMOUS_CODING CG6752 DOWNSTREAM Gyc88E & 1 other
2R	12464260	2R_12464260_SNP [dm3] 2R_16576755_SNP [dm6]	A	T	1.399e^-4	0.831	UPSTREAM CG8317 INTERGENIC
3R	13725225	3R_13725225_SNP [dm3] 3R_17899503_SNP [dm6]	T	G	1.407e^-4	0.831	INTRON Rim
3R	17110321	3R_17110321_SNP [dm3] 3R_21284599_SNP [dm6]	T	C	1.409e^-4	0.831	DOWNSTREAM CG17298 INTRON SIFaR
X	14217825	X_14217825_SNP [dm3] X_14323792_SNP [dm6]	C	T	1.414e^-4	0.831	INTRON dpr8
3L	9602246	3L_9602246_SNP [dm3] 3L_9609146_SNP [dm6]	T	C	1.417e^-4	0.831	SYNONYMOUS_CODING CG3280
X	8074514	X_8074514_SNP [dm3] X_8180481_SNP [dm6]	C	G	1.426e^-4	0.831	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	10029527	3L_10029527_SNP [dm3] 3L_10036427_SNP [dm6]	A	C	1.431e^-4	0.831	INTRON dpr6
3R	25219435	3R_25219435_SNP [dm3] 3R_29393713_SNP [dm6]	C	T	1.438e^-4	0.831	INTRON Ptp99A
3R	11160875	3R_11160875_SNP [dm3] 3R_15335153_SNP [dm6]	T	C	1.441e^-4	0.831	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3L	9358083	3L_9358083_SNP [dm3] 3L_9364983_SNP [dm6]	C	T	1.442e^-4	0.831	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22938239	3R_22938239_SNP [dm3] 3R_27112517_SNP [dm6]	G	A	1.446e^-4	0.831	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	19415477	3L_19415477_INS [dm3] 3L_19422377_INS [dm6]	A	AAACTA	1.447e^-4	0.831	DOWNSTREAM CR32205 INTERGENIC	transposable element FlyBase
2L	8564099	2L_8564099_SNP [dm3] 2L_8564099_SNP [dm6]	C	T	1.448e^-4	0.831	NON_SYNONYMOUS_CODING Sema-1a
2L	2272037	2L_2272037_SNP [dm3] 2L_2272037_SNP [dm6]	G	C	1.456e^-4	0.831	EXON CR43753
3L	9464992	3L_9464992_SNP [dm3] 3L_9471892_SNP [dm6]	T	A	1.456e^-4	0.831	SYNONYMOUS_CODING CG44838 INTRON CG44838	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	1.459e^-4	0.831	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	16910041	3R_16910041_SNP [dm3] 3R_21084319_SNP [dm6]	C	T	1.463e^-4	0.831	INTRON RhoGAP93B
2R	11181136	2R_11181136_SNP [dm3] 2R_15293631_SNP [dm6]	A	T	1.470e^-4	0.831	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
X	5729438	X_5729438_SNP [dm3] X_5835405_SNP [dm6]	A	T	1.478e^-4	0.831	INTRON CG15765
3R	22939417	3R_22939417_SNP [dm3] 3R_27113695_SNP [dm6]	G	C	1.500e^-4	0.831	NON_SYNONYMOUS_CODING CG5815	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	17683579	3R_17683579_SNP [dm3] 3R_21857857_SNP [dm6]	A	G	1.501e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14575696	2R_14575696_SNP [dm3] 2R_18688191_SNP [dm6]	A	C	1.513e^-4	0.831	UTR_5_PRIME Sik3 UTR_3_PRIME CG42855 UPSTREAM Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	16597223	X_16597223_SNP [dm3] X_16703190_SNP [dm6]	C	G	1.514e^-4	0.831	SYNONYMOUS_CODING CG9673 UPSTREAM CG4653 INTRON CG4678	TF binding site mE1_TFBS_chinmo
X	19765772	X_19765772_INS [dm3] X_19871739_INS [dm6]	T	TCAAT	1.516e^-4	0.831	INTRON Hers	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12822371	3L_12822371_SNP [dm3] 3L_12829271_SNP [dm6]	G	A	1.518e^-4	0.831	INTRON CG10960
2R	10897837	2R_10897837_SNP [dm3] 2R_15010332_SNP [dm6]	T	G	1.520e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
3R	11159813	3R_11159813_SNP [dm3] 3R_15334091_SNP [dm6]	C	T	1.524e^-4	0.831	SYNONYMOUS_CODING Sra-1 UPSTREAM FK506-bp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13682429	3R_13682429_SNP [dm3] 3R_17856707_SNP [dm6]	A	C	1.529e^-4	0.831	INTRON tinc
2L	2250009	2L_2250009_DEL [dm3] 2L_2250009_DEL [dm6]	CT	C	1.535e^-4	0.831	DOWNSTREAM Ser12 INTERGENIC
3R	9178770	3R_9178770_SNP [dm3] 3R_13353048_SNP [dm6]	G	T	1.535e^-4	0.831	UPSTREAM mthl12 INTERGENIC
2L	13280339	2L_13280339_SNP [dm3] 2L_13280339_SNP [dm6]	G	A	1.538e^-4	0.831	SYNONYMOUS_CODING CG44085 INTRON CG44085
3L	3162277	3L_3162277_SNP [dm3] 3L_3162277_SNP [dm6]	G	A	1.550e^-4	0.831	NON_SYNONYMOUS_CODING rasp DOWNSTREAM pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18694749	3L_18694749_SNP [dm3] 3L_18701649_SNP [dm6]	T	A	1.552e^-4	0.831	INTERGENIC
2L	11609879	2L_11609879_SNP [dm3] 2L_11609879_SNP [dm6]	A	G	1.552e^-4	0.831	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
2R	8668755	2R_8668755_SNP [dm3] 2R_12781250_SNP [dm6]	T	C	1.556e^-4	0.831	SYNONYMOUS_CODING sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6254783	2R_6254783_SNP [dm3] 2R_10367278_SNP [dm6]	G	A	1.558e^-4	0.831	INTRON CG42732
2L	2094283	2L_2094283_SNP [dm3] 2L_2094283_SNP [dm6]	T	A	1.566e^-4	0.831	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
3R	10649336	3R_10649336_SNP [dm3] 3R_14823614_SNP [dm6]	G	T	1.568e^-4	0.831	INTRON btsz	TF binding site mE1_TFBS_bab1
3L	7864352	3L_7864352_SNP [dm3] 3L_7871252_SNP [dm6]	C	T	1.569e^-4	0.831	INTRON CG32365
3L	17832437	3L_17832437_SNP [dm3] 3L_17839337_SNP [dm6]	C	A	1.574e^-4	0.831	UTR_3_PRIME Grd DOWNSTREAM CG5577
3R	13180985	3R_13180985_DEL [dm3] 3R_17355263_DEL [dm6]	TTGT	T	1.580e^-4	0.831	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2R	13644091	2R_13644091_SNP [dm3] 2R_17756586_SNP [dm6]	G	T	1.591e^-4	0.831	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21971876	3R_21971876_SNP [dm3] 3R_26146154_SNP [dm6]	A	G	1.592e^-4	0.831	INTERGENIC
3L	20425715	3L_20425715_SNP [dm3] 3L_20432615_SNP [dm6]	C	G	1.592e^-4	0.831	START_GAINED Psn UTR_5_PRIME Psn UPSTREAM Psn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21966116	3R_21966116_SNP [dm3] 3R_26140394_SNP [dm6]	A	G	1.599e^-4	0.831	INTERGENIC
3L	15770811	3L_15770811_SNP [dm3] 3L_15777711_SNP [dm6]	T	C	1.609e^-4	0.831	INTERGENIC
3R	15123870	3R_15123870_SNP [dm3] 3R_19298148_SNP [dm6]	A	T	1.612e^-4	0.831	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4245239	X_4245239_DEL [dm3] X_4351206_DEL [dm6]	GCATTG	G	1.612e^-4	0.831	INTRON norpA
2R	14099970	2R_14099970_SNP [dm3] 2R_18212465_SNP [dm6]	T	A	1.614e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11532843	2R_11532843_SNP [dm3] 2R_15645338_SNP [dm6]	G	C	1.615e^-4	0.831	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11148782	3L_11148782_SNP [dm3] 3L_11155682_SNP [dm6]	G	A	1.617e^-4	0.831	INTRON CG32082
X	4245255	X_4245255_SNP [dm3] X_4351222_SNP [dm6]	G	A	1.623e^-4	0.831	INTRON norpA
3R	10765745	3R_10765745_SNP [dm3] 3R_14940023_SNP [dm6]	C	T	1.624e^-4	0.831	INTERGENIC
3L	18051773	3L_18051773_SNP [dm3] 3L_18058673_SNP [dm6]	C	T	1.639e^-4	0.831	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8163430	X_8163430_SNP [dm3] X_8269397_SNP [dm6]	A	G	1.641e^-4	0.831	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3L	3022584	3L_3022584_SNP [dm3] 3L_3022584_SNP [dm6]	G	A	1.647e^-4	0.831	INTERGENIC
3R	22936571	3R_22936571_SNP [dm3] 3R_27110849_SNP [dm6]	G	A	1.657e^-4	0.831	INTRON gb EXON CR45209	TF binding site BDTNP1_TFBS_dl
3L	14046963	3L_14046963_SNP [dm3] 3L_14053863_SNP [dm6]	G	C	1.659e^-4	0.831	UTR_5_PRIME CG32138 UPSTREAM CG13484 DOWNSTREAM CG43986	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	16055552	3L_16055552_SNP [dm3] 3L_16062452_SNP [dm6]	G	A	1.660e^-4	0.831	SYNONYMOUS_CODING Mbs
3L	2726106	3L_2726106_SNP [dm3] 3L_2726106_SNP [dm6]	T	G	1.665e^-4	0.831	INTRON Mrtf
3R	22947189	3R_22947189_SNP [dm3] 3R_27121467_SNP [dm6]	G	A	1.667e^-4	0.831	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059
2L	6144696	2L_6144696_SNP [dm3] 2L_6144696_SNP [dm6]	C	T	1.686e^-4	0.831	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
2R	6239955	2R_6239955_SNP [dm3] 2R_10352450_SNP [dm6]	A	C	1.689e^-4	0.831	UPSTREAM CG43172 & 2 others DOWNSTREAM CG43171 & 2 others INTRON CG42732
2L	13146120	2L_13146120_SNP [dm3] 2L_13146120_SNP [dm6]	G	A	1.690e^-4	0.831	UPSTREAM CR44199 INTERGENIC
2L	9179752	2L_9179752_SNP [dm3] 2L_9179752_SNP [dm6]	C	G	1.704e^-4	0.831	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10255623	X_10255623_SNP [dm3] X_10361590_SNP [dm6]	G	A	1.704e^-4	0.831	INTRON l_1_G0289
3L	18250803	3L_18250803_SNP [dm3] 3L_18257703_SNP [dm6]	G	A	1.706e^-4	0.831	INTERGENIC
2L	8788312	2L_8788312_SNP [dm3] 2L_8788312_SNP [dm6]	G	C	1.709e^-4	0.831	INTERGENIC
3L	820189	3L_820189_SNP [dm3] 3L_820189_SNP [dm6]	C	A	1.712e^-4	0.831	UPSTREAM CR43883 INTERGENIC
3R	19510419	3R_19510419_SNP [dm3] 3R_23684697_SNP [dm6]	A	C	1.728e^-4	0.831	SYNONYMOUS_CODING CG18754 DOWNSTREAM CG16710
3R	26075786	3R_26075786_SNP [dm3] 3R_30250064_SNP [dm6]	T	C	1.739e^-4	0.831	UPSTREAM CG9682 DOWNSTREAM CG34299 INTRON CG34299	TF binding site mE1_TFBS_inv
3L	9890502	3L_9890502_SNP [dm3] 3L_9897402_SNP [dm6]	T	A	1.739e^-4	0.831	UPSTREAM CG6707 INTRON CG6707	TF binding site mE1_TFBS_cad
3R	10649932	3R_10649932_SNP [dm3] 3R_14824210_SNP [dm6]	G	T	1.740e^-4	0.831	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz INTRON btsz
3L	14214837	3L_14214837_SNP [dm3] 3L_14221737_SNP [dm6]	T	G	1.744e^-4	0.831	INTRON nuf
3L	9896874	3L_9896874_SNP [dm3] 3L_9903774_SNP [dm6]	A	T	1.753e^-4	0.831	DOWNSTREAM nudE INTERGENIC
3R	5467420	3R_5467420_SNP [dm3] 3R_9641698_SNP [dm6]	G	T	1.758e^-4	0.831	INTRON Dh44
3R	20526972	3R_20526972_SNP [dm3] 3R_24701250_SNP [dm6]	G	T	1.761e^-4	0.831	INTRON slo
3L	19221110	3L_19221110_SNP [dm3] 3L_19228010_SNP [dm6]	C	T	1.763e^-4	0.831	INTRON fz2
3R	5449512	3R_5449512_SNP [dm3] 3R_9623790_SNP [dm6]	A	G	1.765e^-4	0.831	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10214083	3L_10214083_SNP [dm3] 3L_10220983_SNP [dm6]	A	G	1.765e^-4	0.831	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
2L	11925517	2L_11925517_SNP [dm3] 2L_11925517_SNP [dm6]	A	G	1.768e^-4	0.831	INTRON Pde1c
2R	10621306	2R_10621306_SNP [dm3] 2R_14733801_SNP [dm6]	A	G	1.770e^-4	0.831	INTERGENIC
3R	7964094	3R_7964094_SNP [dm3] 3R_12138372_SNP [dm6]	G	C	1.776e^-4	0.831	DOWNSTREAM dpr15 INTERGENIC
3L	9900731	3L_9900731_SNP [dm3] 3L_9907631_SNP [dm6]	A	G	1.784e^-4	0.831	UPSTREAM CG34356 INTERGENIC
3L	15667876	3L_15667876_DEL [dm3] 3L_15674776_DEL [dm6]	ACTCACCCCATTCACTTT...	A	1.784e^-4	0.831	INTERGENIC	silencer mE1_HDAC_PRE
3R	10650757	3R_10650757_SNP [dm3] 3R_14825035_SNP [dm6]	A	G	1.786e^-4	0.831	SPLICE_SITE_DONOR btsz INTRON btsz
3L	13840950	3L_13840950_SNP [dm3] 3L_13847850_SNP [dm6]	C	A	1.787e^-4	0.831	INTRON Hml
3R	26036299	3R_26036299_SNP [dm3] 3R_30210577_SNP [dm6]	T	C	1.797e^-4	0.831	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	7102226	2L_7102226_SNP [dm3] 2L_7102226_SNP [dm6]	T	C	1.801e^-4	0.831	INTRON Pvf3
2R	16875166	2R_16875166_SNP [dm3] 2R_20987661_SNP [dm6]	G	A	1.803e^-4	0.831	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20202883	2R_20202883_SNP [dm3] 2R_24315360_SNP [dm6]	C	T	1.804e^-4	0.831	INTERGENIC
3L	18696466	3L_18696466_SNP [dm3] 3L_18703366_SNP [dm6]	C	T	1.811e^-4	0.831	INTERGENIC
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	1.814e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	5064904	2R_5064904_SNP [dm3] 2R_9177399_SNP [dm6]	A	T	1.825e^-4	0.831	UPSTREAM Rme-8 DOWNSTREAM ltd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22939305	3R_22939305_SNP [dm3] 3R_27113583_SNP [dm6]	A	G	1.825e^-4	0.831	SYNONYMOUS_CODING CG5815	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	6807583	2L_6807583_SNP [dm3] 2L_6807583_SNP [dm6]	T	C	1.828e^-4	0.831	INTERGENIC
3R	22947338	3R_22947338_SNP [dm3] 3R_27121616_SNP [dm6]	G	A	1.828e^-4	0.831	DOWNSTREAM CG6059 & 1 other INTERGENIC
2R	17588907	2R_17588907_SNP [dm3] 2R_21701402_SNP [dm6]	G	T	1.828e^-4	0.831	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	8163742	X_8163742_SNP [dm3] X_8269709_SNP [dm6]	T	C	1.839e^-4	0.831	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
2R	10678608	2R_10678608_SNP [dm3] 2R_14791103_SNP [dm6]	C	T	1.841e^-4	0.831	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23365162	3R_23365162_SNP [dm3] 3R_27539440_SNP [dm6]	T	G	1.844e^-4	0.831	DOWNSTREAM CR44288 INTERGENIC
2L	14432674	2L_14432674_SNP [dm3] 2L_14432674_SNP [dm6]	G	A	1.844e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
X	14217821	X_14217821_SNP [dm3] X_14323788_SNP [dm6]	G	C	1.849e^-4	0.831	INTRON dpr8
2L	13541077	2L_13541077_SNP [dm3] 2L_13541077_SNP [dm6]	T	C	1.853e^-4	0.831	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
3L	18250795	3L_18250795_SNP [dm3] 3L_18257695_SNP [dm6]	A	G	1.856e^-4	0.831	INTERGENIC
3R	17458006	3R_17458006_SNP [dm3] 3R_21632284_SNP [dm6]	T	C	1.860e^-4	0.831	UTR_5_PRIME E2f INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	18620835	3R_18620835_SNP [dm3] 3R_22795113_SNP [dm6]	A	T	1.865e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17965541	3R_17965541_SNP [dm3] 3R_22139819_SNP [dm6]	G	A	1.866e^-4	0.831	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12546817	3R_12546817_SNP [dm3] 3R_16721095_SNP [dm6]	A	G	1.868e^-4	0.831	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	18746890	3L_18746890_DEL [dm3] 3L_18753790_DEL [dm6]	TCAG	T	1.877e^-4	0.831	INTRON ftz-f1
3L	18696490	3L_18696490_SNP [dm3] 3L_18703390_SNP [dm6]	A	G	1.878e^-4	0.831	INTERGENIC
3R	17965461	3R_17965461_SNP [dm3] 3R_22139739_SNP [dm6]	G	A	1.881e^-4	0.831	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17965564	3R_17965564_SNP [dm3] 3R_22139842_SNP [dm6]	C	G	1.881e^-4	0.831	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12804628	3L_12804628_SNP [dm3] 3L_12811528_SNP [dm6]	G	A	1.881e^-4	0.831	SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13116080	3L_13116080_SNP [dm3] 3L_13122980_SNP [dm6]	A	T	1.885e^-4	0.831	INTERGENIC
3L	16355282	3L_16355282_SNP [dm3] 3L_16362182_SNP [dm6]	G	T	1.889e^-4	0.831	UPSTREAM Cpr72Ea & 1 other INTERGENIC
3L	11645293	3L_11645293_SNP [dm3] 3L_11652193_SNP [dm6]	C	A	1.895e^-4	0.831	INTRON CG32085
2R	6676960	2R_6676960_SNP [dm3] 2R_10789455_SNP [dm6]	A	C	1.903e^-4	0.831	INTRON CG33144
2R	17789901	2R_17789901_SNP [dm3] 2R_21902396_SNP [dm6]	A	G	1.928e^-4	0.831	INTRON Fili
3R	22939086	3R_22939086_SNP [dm3] 3R_27113364_SNP [dm6]	G	A	1.939e^-4	0.831	SYNONYMOUS_CODING CG5815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9597038	2R_9597038_SNP [dm3] 2R_13709533_SNP [dm6]	C	A	1.939e^-4	0.831	INTRON fas
3L	18921428	3L_18921428_SNP [dm3] 3L_18928328_SNP [dm6]	A	G	1.941e^-4	0.831	INTRON CG32204	TF binding site mE1_TFBS_run
3L	18949584	3L_18949584_SNP [dm3] 3L_18956484_SNP [dm6]	A	G	1.946e^-4	0.831	INTERGENIC
3R	22952661	3R_22952661_SNP [dm3] 3R_27126939_SNP [dm6]	T	G	1.952e^-4	0.831	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21971923	3R_21971923_SNP [dm3] 3R_26146201_SNP [dm6]	A	G	1.960e^-4	0.831	INTERGENIC
3L	18004130	3L_18004130_SNP [dm3] 3L_18011030_SNP [dm6]	G	T	1.960e^-4	0.831	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	18746804	3L_18746804_SNP [dm3] 3L_18753704_SNP [dm6]	C	T	1.962e^-4	0.831	INTRON ftz-f1
3L	1124326	3L_1124326_SNP [dm3] 3L_1124326_SNP [dm6]	A	T	1.964e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs
2L	10545169	2L_10545169_SNP [dm3] 2L_10545169_SNP [dm6]	C	T	1.966e^-4	0.831	UTR_5_PRIME Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5690305	2L_5690305_SNP [dm3] 2L_5690305_SNP [dm6]	G	C	1.986e^-4	0.831	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2R	7498343	2R_7498343_SNP [dm3] 2R_11610838_SNP [dm6]	A	G	1.986e^-4	0.831	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13302442	X_13302442_SNP [dm3] X_13408409_SNP [dm6]	A	G	1.988e^-4	0.831	SYNONYMOUS_CODING GstT4 DOWNSTREAM CG1998
2R	18738991	2R_18738991_SNP [dm3] 2R_22851468_SNP [dm6]	A	T	1.992e^-4	0.831	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
3R	12987003	3R_12987003_SNP [dm3] 3R_17161281_SNP [dm6]	A	T	1.993e^-4	0.831	INTRON Mur89F
X	13228317	X_13228317_SNP [dm3] X_13334284_SNP [dm6]	A	C	1.998e^-4	0.831	INTERGENIC
3L	18949543	3L_18949543_SNP [dm3] 3L_18956443_SNP [dm6]	C	T	2.001e^-4	0.831	INTERGENIC
3L	15679082	3L_15679082_SNP [dm3] 3L_15685982_SNP [dm6]	T	C	2.005e^-4	0.831	SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452
2R	18752535	2R_18752535_DEL [dm3] 2R_22865012_DEL [dm6]	ATATTTCGATATATACAG...	A	2.007e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4342612	3L_4342612_SNP [dm3] 3L_4342612_SNP [dm6]	A	G	2.010e^-4	0.831	INTRON Cip4
2L	4821018	2L_4821018_SNP [dm3] 2L_4821018_SNP [dm6]	T	C	2.011e^-4	0.831	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	2.012e^-4	0.831	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
2L	5062641	2L_5062641_SNP [dm3] 2L_5062641_SNP [dm6]	T	C	2.012e^-4	0.831	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_HSA
2R	14364231	2R_14364231_SNP [dm3] 2R_18476726_SNP [dm6]	C	T	2.012e^-4	0.831	UTR_5_PRIME CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18746882	3L_18746882_SNP [dm3] 3L_18753782_SNP [dm6]	G	T	2.018e^-4	0.831	INTRON ftz-f1
3R	18435193	3R_18435193_SNP [dm3] 3R_22609471_SNP [dm6]	C	T	2.018e^-4	0.831	NON_SYNONYMOUS_CODING CG31156 UPSTREAM CG13843 DOWNSTREAM Efa6	TF binding site mE1_TFBS_inv
2L	6154646	2L_6154646_SNP [dm3] 2L_6154646_SNP [dm6]	G	T	2.019e^-4	0.831	SPLICE_SITE_REGION CG31639 UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_chinmo
3R	22947306	3R_22947306_SNP [dm3] 3R_27121584_SNP [dm6]	A	G	2.030e^-4	0.831	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059
3R	13725553	3R_13725553_SNP [dm3] 3R_17899831_SNP [dm6]	T	G	2.033e^-4	0.831	INTRON Rim
3R	23519908	3R_23519908_SNP [dm3] 3R_27694186_SNP [dm6]	G	A	2.034e^-4	0.831	UPSTREAM CG43319 & 1 other INTERGENIC
3R	22949117	3R_22949117_SNP [dm3] 3R_27123395_SNP [dm6]	C	T	2.042e^-4	0.831	SYNONYMOUS_CODING CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14458616	X_14458616_SNP [dm3] X_14564583_SNP [dm6]	C	T	2.044e^-4	0.831	INTERGENIC
3R	5192592	3R_5192592_SNP [dm3] 3R_9366870_SNP [dm6]	A	T	2.044e^-4	0.831	DOWNSTREAM FER INTRON CG8129
2R	13000034	2R_13000034_SNP [dm3] 2R_17112529_SNP [dm6]	C	T	2.050e^-4	0.831	INTRON CG15611
3L	10214103	3L_10214103_SNP [dm3] 3L_10221003_SNP [dm6]	A	C	2.055e^-4	0.831	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
3L	8160222	3L_8160222_SNP [dm3] 3L_8167122_SNP [dm6]	T	G	2.062e^-4	0.831	INTERGENIC
2L	3271765	2L_3271765_SNP [dm3] 2L_3271765_SNP [dm6]	C	A	2.063e^-4	0.831	UTR_3_PRIME CG3347
2R	20863791	2R_20863791_SNP [dm3] 2R_24976268_SNP [dm6]	C	T	2.065e^-4	0.831	UPSTREAM CG2736 DOWNSTREAM emp & 1 other INTERGENIC
3R	15380611	3R_15380611_SNP [dm3] 3R_19554889_SNP [dm6]	G	A	2.070e^-4	0.831	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10712140	3L_10712140_INS [dm3] 3L_10719040_INS [dm6]	A	ATAAATAATAAATAA...	2.071e^-4	0.831	INTERGENIC
2R	5065913	2R_5065913_SNP [dm3] 2R_9178408_SNP [dm6]	A	T	2.074e^-4	0.831	UTR_3_PRIME ltd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	12822965	3L_12822965_SNP [dm3] 3L_12829865_SNP [dm6]	C	T	2.078e^-4	0.831	INTRON CG10960
2R	7498383	2R_7498383_SNP [dm3] 2R_11610878_SNP [dm6]	G	T	2.079e^-4	0.831	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18949513	3L_18949513_DEL [dm3] 3L_18956413_DEL [dm6]	AACGG	TT	2.082e^-4	0.831	INTERGENIC
2R	5092197	2R_5092197_SNP [dm3] 2R_9204692_SNP [dm6]	C	A	2.084e^-4	0.831	UTR_3_PRIME CG8027
3R	14141699	3R_14141699_SNP [dm3] 3R_18315977_SNP [dm6]	G	A	2.088e^-4	0.831	DOWNSTREAM CG31235 INTERGENIC
3L	9896834	3L_9896834_SNP [dm3] 3L_9903734_SNP [dm6]	A	C	2.091e^-4	0.831	DOWNSTREAM nudE INTERGENIC
3R	12986961	3R_12986961_SNP [dm3] 3R_17161239_SNP [dm6]	T	A	2.092e^-4	0.831	INTRON Mur89F
3L	10217573	3L_10217573_SNP [dm3] 3L_10224473_SNP [dm6]	G	A	2.102e^-4	0.833	INTRON scramb1
3R	22931131	3R_22931131_SNP [dm3] 3R_27105409_SNP [dm6]	T	A	2.106e^-4	0.833	INTRON CG6074
3R	15244233	3R_15244233_SNP [dm3] 3R_19418511_SNP [dm6]	A	G	2.114e^-4	0.834	INTRON CG31221
2L	902175	2L_902175_SNP [dm3] 2L_902175_SNP [dm6]	G	A	2.127e^-4	0.834	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17965505	3R_17965505_DEL [dm3] 3R_22139783_DEL [dm6]	TTTAGCA	T	2.128e^-4	0.834	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17965542	3R_17965542_SNP [dm3] 3R_22139820_SNP [dm6]	A	T	2.128e^-4	0.834	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8834518	2R_8834518_SNP [dm3] 2R_12947013_SNP [dm6]	T	C	2.137e^-4	0.834	UPSTREAM Mdr49 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4261032	2L_4261032_SNP [dm3] 2L_4261032_SNP [dm6]	G	T	2.139e^-4	0.834	EXON CR44080
2R	8870482	2R_8870482_SNP [dm3] 2R_12982977_SNP [dm6]	G	T	2.145e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15863286	3L_15863286_SNP [dm3] 3L_15870186_SNP [dm6]	T	G	2.145e^-4	0.834	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3271644	2L_3271644_SNP [dm3] 2L_3271644_SNP [dm6]	C	A	2.150e^-4	0.834	UTR_3_PRIME CG3347
3L	4899505	3L_4899505_SNP [dm3] 3L_4899505_SNP [dm6]	A	C	2.165e^-4	0.835	INTRON CG13704
3R	13592323	3R_13592323_SNP [dm3] 3R_17766601_SNP [dm6]	C	A	2.175e^-4	0.835	INTERGENIC
3R	21971958	3R_21971958_INS [dm3] 3R_26146236_INS [dm6]	T	TATACA	2.183e^-4	0.835	INTERGENIC
3L	15891515	3L_15891515_SNP [dm3] 3L_15898415_SNP [dm6]	T	C	2.198e^-4	0.835	INTRON pHCl
3R	19900440	3R_19900440_SNP [dm3] 3R_24074718_SNP [dm6]	G	T	2.198e^-4	0.835	INTRON 4EHP	insulator Insulator_Class_II.mE01
3R	26132922	3R_26132922_SNP [dm3] 3R_30307200_SNP [dm6]	G	A	2.201e^-4	0.835	UPSTREAM CG34300 INTRON hdc
X	8415682	X_8415682_SNP [dm3] X_8521649_SNP [dm6]	G	A	2.204e^-4	0.835	INTRON Nrg
3L	18741417	3L_18741417_INS [dm3] 3L_18748317_INS [dm6]	G	GA	2.212e^-4	0.835	UTR_5_PRIME Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3022593	3L_3022593_SNP [dm3] 3L_3022593_SNP [dm6]	A	T	2.213e^-4	0.835	INTERGENIC
3L	10566678	3L_10566678_SNP [dm3] 3L_10573578_SNP [dm6]	C	A	2.214e^-4	0.835	SYNONYMOUS_CODING A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	18135359	3L_18135359_SNP [dm3] 3L_18142259_SNP [dm6]	T	C	2.218e^-4	0.835	INTRON gk
2L	2738397	2L_2738397_SNP [dm3] 2L_2738397_SNP [dm6]	A	C	2.219e^-4	0.835	DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16603835	3L_16603835_SNP [dm3] 3L_16610735_SNP [dm6]	G	T	2.221e^-4	0.835	UTR_3_PRIME Su_P_ UPSTREAM Prosbeta6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	19221092	3L_19221092_SNP [dm3] 3L_19227992_SNP [dm6]	A	G	2.227e^-4	0.835	INTRON fz2
2L	1033631	2L_1033631_SNP [dm3] 2L_1033631_SNP [dm6]	G	C	2.227e^-4	0.835	INTRON IA-2
2R	9915605	2R_9915605_SNP [dm3] 2R_14028100_SNP [dm6]	G	T	2.227e^-4	0.835	UPSTREAM CG18371 INTRON mam
2L	4821494	2L_4821494_SNP [dm3] 2L_4821494_SNP [dm6]	A	G	2.231e^-4	0.835	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18949572	3L_18949572_SNP [dm3] 3L_18956472_SNP [dm6]	A	T	2.231e^-4	0.835	INTERGENIC
3R	19901331	3R_19901331_SNP [dm3] 3R_24075609_SNP [dm6]	A	T	2.239e^-4	0.836	INTRON 4EHP
3R	25956507	3R_25956507_SNP [dm3] 3R_30130785_SNP [dm6]	G	T	2.274e^-4	0.839	NON_SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5877665	X_5877665_SNP [dm3] X_5983632_SNP [dm6]	C	A	2.278e^-4	0.839	INTRON Grip
3L	3525165	3L_3525165_SNP [dm3] 3L_3525165_SNP [dm6]	G	T	2.282e^-4	0.839	INTRON Eip63E
3R	23268339	3R_23268339_SNP [dm3] 3R_27442617_SNP [dm6]	G	A	2.284e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22932364	3R_22932364_SNP [dm3] 3R_27106642_SNP [dm6]	C	T	2.284e^-4	0.839	UPSTREAM CG6074 INTERGENIC
3R	15014212	3R_15014212_INS [dm3] 3R_19188490_INS [dm6]	G	GCCTTCAGCTG...	2.289e^-4	0.839	INTRON CG31475
3L	18742113	3L_18742113_SNP [dm3] 3L_18749013_SNP [dm6]	T	A	2.296e^-4	0.839	UPSTREAM Nufip INTRON Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	21964308	3R_21964308_SNP [dm3] 3R_26138586_SNP [dm6]	C	A	2.296e^-4	0.839	INTERGENIC
3R	5866100	3R_5866100_SNP [dm3] 3R_10040378_SNP [dm6]	G	A	2.299e^-4	0.839	INTRON Mical
3L	3431578	3L_3431578_SNP [dm3] 3L_3431578_SNP [dm6]	A	C	2.299e^-4	0.839	INTRON eIF5B
3R	22947285	3R_22947285_SNP [dm3] 3R_27121563_SNP [dm6]	T	C	2.317e^-4	0.839	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059
3L	2727551	3L_2727551_SNP [dm3] 3L_2727551_SNP [dm6]	A	T	2.320e^-4	0.839	INTRON Mrtf
2R	15141490	2R_15141490_SNP [dm3] 2R_19253985_SNP [dm6]	A	T	2.324e^-4	0.839	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	4692512	3L_4692512_SNP [dm3] 3L_4692512_SNP [dm6]	T	C	2.328e^-4	0.839	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	17685188	2L_17685188_SNP [dm3] 2L_17685188_SNP [dm6]	A	G	2.328e^-4	0.839	INTRON CadN
X	4234532	X_4234532_INS [dm3] X_4340499_INS [dm6]	T	TT	2.333e^-4	0.839	INTRON norpA
3R	19735111	3R_19735111_SNP [dm3] 3R_23909389_SNP [dm6]	A	G	2.344e^-4	0.839	INTRON sba
X	15094721	X_15094721_SNP [dm3] X_15200688_SNP [dm6]	G	A	2.349e^-4	0.839	INTERGENIC
3L	10954655	3L_10954655_SNP [dm3] 3L_10961555_SNP [dm6]	G	T	2.355e^-4	0.839	EXON CR45249
3L	15866312	3L_15866312_SNP [dm3] 3L_15873212_SNP [dm6]	C	A	2.358e^-4	0.839	INTRON pHCl
3L	15866422	3L_15866422_SNP [dm3] 3L_15873322_SNP [dm6]	C	T	2.358e^-4	0.839	INTRON pHCl
3L	7864482	3L_7864482_SNP [dm3] 3L_7871382_SNP [dm6]	A	C	2.358e^-4	0.839	INTRON CG32365
X	2313400	X_2313400_SNP [dm3] X_2419367_SNP [dm6]	T	C	2.362e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3L	12928241	3L_12928241_SNP [dm3] 3L_12935141_SNP [dm6]	C	T	2.362e^-4	0.839	INTERGENIC
3L	15420237	3L_15420237_SNP [dm3] 3L_15427137_SNP [dm6]	T	A	2.375e^-4	0.839	INTERGENIC
3L	6652195	3L_6652195_SNP [dm3] 3L_6659095_SNP [dm6]	T	A	2.386e^-4	0.839	INTERGENIC
3L	9897277	3L_9897277_SNP [dm3] 3L_9904177_SNP [dm6]	C	T	2.390e^-4	0.839	INTERGENIC
2R	11624575	2R_11624575_SNP [dm3] 2R_15737070_SNP [dm6]	C	G	2.396e^-4	0.839	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	398847	2R_398847_DEL [dm3] 2R_4511342_DEL [dm6]	AACAA	A	2.397e^-4	0.839	INTERGENIC
X	5226771	X_5226771_SNP [dm3] X_5332738_SNP [dm6]	C	T	2.398e^-4	0.839	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14100005	2R_14100005_SNP [dm3] 2R_18212500_SNP [dm6]	A	T	2.401e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22311997	3R_22311997_SNP [dm3] 3R_26486275_SNP [dm6]	T	A	2.401e^-4	0.839	INTRON plum
3R	22947476	3R_22947476_SNP [dm3] 3R_27121754_SNP [dm6]	A	T	2.403e^-4	0.839	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882
3R	14980554	3R_14980554_SNP [dm3] 3R_19154832_SNP [dm6]	T	C	2.407e^-4	0.839	UTR_3_PRIME CG11779
3R	25948765	3R_25948765_SNP [dm3] 3R_30123043_SNP [dm6]	A	G	2.408e^-4	0.839	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	5449864	3R_5449864_SNP [dm3] 3R_9624142_SNP [dm6]	T	A	2.411e^-4	0.839	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10140019	3L_10140019_SNP [dm3] 3L_10146919_SNP [dm6]	G	T	2.414e^-4	0.839	DOWNSTREAM dpr10 INTERGENIC
3R	26036448	3R_26036448_SNP [dm3] 3R_30210726_SNP [dm6]	C	T	2.423e^-4	0.841	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	13589843	3R_13589843_SNP [dm3] 3R_17764121_SNP [dm6]	A	G	2.443e^-4	0.841	UPSTREAM TyrR INTERGENIC
X	18227247	X_18227247_SNP [dm3] X_18333214_SNP [dm6]	C	T	2.450e^-4	0.841	INTRON CG6123
3R	11356433	3R_11356433_SNP [dm3] 3R_15530711_SNP [dm6]	G	T	2.454e^-4	0.841	NON_SYNONYMOUS_CODING CG31296
3L	18949544	3L_18949544_SNP [dm3] 3L_18956444_SNP [dm6]	T	G	2.459e^-4	0.841	INTERGENIC
3R	23269775	3R_23269775_SNP [dm3] 3R_27444053_SNP [dm6]	G	A	2.463e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6927456	2R_6927456_SNP [dm3] 2R_11039951_SNP [dm6]	T	A	2.476e^-4	0.841	INTRON luna
3R	15163984	3R_15163984_SNP [dm3] 3R_19338262_SNP [dm6]	C	T	2.477e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10899102	2R_10899102_DEL [dm3] 2R_15011597_DEL [dm6]	AA	A	2.477e^-4	0.841	UTR_5_PRIME hbs	TF binding site mE1_TFBS_bab1
3R	13725229	3R_13725229_SNP [dm3] 3R_17899507_SNP [dm6]	A	G	2.479e^-4	0.841	INTRON Rim
X	8415694	X_8415694_SNP [dm3] X_8521661_SNP [dm6]	T	C	2.480e^-4	0.841	INTRON Nrg
3R	12978516	3R_12978516_SNP [dm3] 3R_17152794_SNP [dm6]	C	A	2.490e^-4	0.841	UTR_3_PRIME CG5292 DOWNSTREAM Mur89F
2L	2263004	2L_2263004_SNP [dm3] 2L_2263004_SNP [dm6]	A	C	2.493e^-4	0.841	UPSTREAM CG4270 INTERGENIC
3R	11257351	3R_11257351_SNP [dm3] 3R_15431629_SNP [dm6]	A	T	2.497e^-4	0.841	INTRON CG6118
3L	10029593	3L_10029593_SNP [dm3] 3L_10036493_SNP [dm6]	C	T	2.503e^-4	0.841	INTRON dpr6
2R	7516785	2R_7516785_SNP [dm3] 2R_11629280_SNP [dm6]	T	G	2.512e^-4	0.841	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14485476	2L_14485476_SNP [dm3] 2L_14485476_SNP [dm6]	C	G	2.513e^-4	0.841	UPSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	17965502	3R_17965502_SNP [dm3] 3R_22139780_SNP [dm6]	T	A	2.513e^-4	0.841	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13589990	3R_13589990_SNP [dm3] 3R_17764268_SNP [dm6]	T	C	2.517e^-4	0.841	INTERGENIC
X	21881446	X_21881446_SNP [dm3] X_22479610_SNP [dm6]	A	T	2.519e^-4	0.841	INTRON CG12576
3L	14556133	3L_14556133_SNP [dm3] 3L_14563033_SNP [dm6]	T	A	2.521e^-4	0.841	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	9146097	3R_9146097_SNP [dm3] 3R_13320375_SNP [dm6]	G	C	2.522e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18111295	2L_18111295_DEL [dm3] 2L_18111295_DEL [dm6]	CCCAAAATTAAAGCGCTAAA...	C	2.526e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9876533	2L_9876533_SNP [dm3] 2L_9876533_SNP [dm6]	A	T	2.537e^-4	0.841	INTRON nAChRalpha6
2R	2790720	2R_2790720_SNP [dm3] 2R_6903215_SNP [dm6]	T	A	2.544e^-4	0.841	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14190270	3R_14190270_SNP [dm3] 3R_18364548_SNP [dm6]	G	A	2.547e^-4	0.841	UTR_3_PRIME WRNexo DOWNSTREAM CG7669
X	20315904	X_20315904_SNP [dm3] X_20444877_SNP [dm6]	A	C	2.555e^-4	0.841	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14233069	3L_14233069_SNP [dm3] 3L_14239969_SNP [dm6]	A	G	2.555e^-4	0.841	UPSTREAM CR45399 INTERGENIC
3L	18949570	3L_18949570_SNP [dm3] 3L_18956470_SNP [dm6]	A	T	2.562e^-4	0.841	INTERGENIC
3L	9470689	3L_9470689_SNP [dm3] 3L_9477589_SNP [dm6]	G	A	2.566e^-4	0.841	NON_SYNONYMOUS_CODING Jarid2 UPSTREAM Uch-L5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15322942	2R_15322942_SNP [dm3] 2R_19435437_SNP [dm6]	C	G	2.570e^-4	0.841	SYNONYMOUS_CODING Fak
3R	17316534	3R_17316534_SNP [dm3] 3R_21490812_SNP [dm6]	A	C	2.571e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15094692	X_15094692_DEL [dm3] X_15200659_DEL [dm6]	TTAATTGGTT	T	2.578e^-4	0.841	INTERGENIC
3L	18949552	3L_18949552_MNP [dm3] 3L_18956452_MNP [dm6]	TGT	GCG	2.581e^-4	0.841	INTERGENIC
3R	9215569	3R_9215569_SNP [dm3] 3R_13389847_SNP [dm6]	C	T	2.590e^-4	0.841	INTRON CCHa2
2L	7274687	2L_7274687_SNP [dm3] 2L_7274687_SNP [dm6]	T	G	2.595e^-4	0.841	INTRON Wnt4
X	8163698	X_8163698_SNP [dm3] X_8269665_SNP [dm6]	A	G	2.597e^-4	0.841	NON_SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
2R	7504235	2R_7504235_SNP [dm3] 2R_11616730_SNP [dm6]	T	C	2.598e^-4	0.841	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3L	2143455	3L_2143455_SNP [dm3] 3L_2143455_SNP [dm6]	C	A	2.609e^-4	0.841	INTRON zormin
3L	18949535	3L_18949535_SNP [dm3] 3L_18956435_SNP [dm6]	T	C	2.616e^-4	0.841	INTERGENIC
X	19205605	X_19205605_SNP [dm3] X_19311572_SNP [dm6]	G	A	2.619e^-4	0.841	SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
3L	19221081	3L_19221081_SNP [dm3] 3L_19227981_SNP [dm6]	A	T	2.622e^-4	0.841	INTRON fz2
3R	18496052	3R_18496052_SNP [dm3] 3R_22670330_SNP [dm6]	C	T	2.627e^-4	0.841	INTRON CG45058
3L	15231197	3L_15231197_SNP [dm3] 3L_15238097_SNP [dm6]	C	T	2.639e^-4	0.841	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	2.639e^-4	0.841	UPSTREAM CR45745 INTERGENIC
3L	14556164	3L_14556164_SNP [dm3] 3L_14563064_SNP [dm6]	T	G	2.651e^-4	0.841	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14556145	3L_14556145_SNP [dm3] 3L_14563045_SNP [dm6]	A	G	2.653e^-4	0.841	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	4109437	2L_4109437_SNP [dm3] 2L_4109437_SNP [dm6]	C	T	2.657e^-4	0.841	INTRON ed
3R	13589593	3R_13589593_SNP [dm3] 3R_17763871_SNP [dm6]	G	C	2.659e^-4	0.841	UPSTREAM TyrR INTERGENIC
3L	13320542	3L_13320542_SNP [dm3] 3L_13327442_SNP [dm6]	T	A	2.664e^-4	0.841	INTERGENIC
3L	15936921	3L_15936921_SNP [dm3] 3L_15943821_SNP [dm6]	C	T	2.669e^-4	0.841	INTRON Pka-C3
2R	11687790	2R_11687790_SNP [dm3] 2R_15800285_SNP [dm6]	T	A	2.674e^-4	0.841	INTRON Zasp52 & 1 other
X	6481308	X_6481308_SNP [dm3] X_6587275_SNP [dm6]	A	G	2.692e^-4	0.841	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10667162	2R_10667162_SNP [dm3] 2R_14779657_SNP [dm6]	G	A	2.698e^-4	0.841	INTRON kn	TF binding site BDTNP1_TFBS_z
3R	10099893	3R_10099893_SNP [dm3] 3R_14274171_SNP [dm6]	G	T	2.705e^-4	0.841	INTRON trx
X	7086316	X_7086316_SNP [dm3] X_7192283_SNP [dm6]	G	A	2.711e^-4	0.841	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	2.717e^-4	0.841	UTR_3_PRIME CG31759 INTRON aret
3L	12102603	3L_12102603_SNP [dm3] 3L_12109503_SNP [dm6]	A	T	2.726e^-4	0.841	INTERGENIC
3R	26036322	3R_26036322_SNP [dm3] 3R_30210600_SNP [dm6]	T	C	2.729e^-4	0.841	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	3271738	2L_3271738_SNP [dm3] 2L_3271738_SNP [dm6]	T	C	2.731e^-4	0.841	UTR_3_PRIME CG3347
2L	1722635	2L_1722635_SNP [dm3] 2L_1722635_SNP [dm6]	G	C	2.757e^-4	0.841	INTRON Rim2
X	10092688	X_10092688_SNP [dm3] X_10198655_SNP [dm6]	G	A	2.758e^-4	0.841	INTRON CR44894
3R	10657083	3R_10657083_SNP [dm3] 3R_14831361_SNP [dm6]	G	T	2.764e^-4	0.841	INTRON btsz
3L	18746817	3L_18746817_SNP [dm3] 3L_18753717_SNP [dm6]	G	C	2.767e^-4	0.841	INTRON ftz-f1
2R	456518	2R_456518_SNP [dm3] 2R_4569013_SNP [dm6]	A	G	2.768e^-4	0.841	INTERGENIC	transposable element FlyBase
3R	17109595	3R_17109595_SNP [dm3] 3R_21283873_SNP [dm6]	A	C	2.769e^-4	0.841	SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22312685	3R_22312685_SNP [dm3] 3R_26486963_SNP [dm6]	G	A	2.770e^-4	0.841	INTRON plum
2R	8655904	2R_8655904_SNP [dm3] 2R_12768399_SNP [dm6]	C	T	2.770e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12308720	2R_12308720_SNP [dm3] 2R_16421215_SNP [dm6]	A	G	2.776e^-4	0.841	INTRON Sema-2b
3R	19741723	3R_19741723_SNP [dm3] 3R_23916001_SNP [dm6]	T	G	2.784e^-4	0.841	INTRON sba
3R	11160836	3R_11160836_SNP [dm3] 3R_15335114_SNP [dm6]	T	C	2.797e^-4	0.841	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
X	12657020	X_12657020_SNP [dm3] X_12762987_SNP [dm6]	A	G	2.800e^-4	0.841	SYNONYMOUS_CODING CG12717	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6792694	2L_6792694_SNP [dm3] 2L_6792694_SNP [dm6]	T	G	2.803e^-4	0.841	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8179360	2L_8179360_SNP [dm3] 2L_8179360_SNP [dm6]	C	A	2.810e^-4	0.841	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18194580	3L_18194580_SNP [dm3] 3L_18201480_SNP [dm6]	G	T	2.813e^-4	0.841	UPSTREAM CG7320 INTERGENIC
3L	18746879	3L_18746879_SNP [dm3] 3L_18753779_SNP [dm6]	T	A	2.813e^-4	0.841	INTRON ftz-f1
3R	23510785	3R_23510785_SNP [dm3] 3R_27685063_SNP [dm6]	G	T	2.817e^-4	0.841	UPSTREAM CG12880 DOWNSTREAM CG31055 INTERGENIC
X	6392706	X_6392706_SNP [dm3] X_6498673_SNP [dm6]	A	T	2.817e^-4	0.841	INTRON CG42340
3R	17965475	3R_17965475_DEL [dm3] 3R_22139753_DEL [dm6]	TAGTTGGGC	T	2.821e^-4	0.841	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18741327	3L_18741327_SNP [dm3] 3L_18748227_SNP [dm6]	G	A	2.830e^-4	0.841	NON_SYNONYMOUS_CODING Nufip UPSTREAM Atg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	9590144	X_9590144_SNP [dm3] X_9696111_SNP [dm6]	T	C	2.833e^-4	0.841	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17605275	2R_17605275_SNP [dm3] 2R_21717770_SNP [dm6]	G	A	2.835e^-4	0.841	UTR_5_PRIME Tango11 UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22948445	3R_22948445_SNP [dm3] 3R_27122723_SNP [dm6]	C	T	2.839e^-4	0.841	SYNONYMOUS_CODING CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	409527	2R_409527_SNP [dm3] 2R_4522022_SNP [dm6]	G	T	2.840e^-4	0.841	INTERGENIC
3L	12102745	3L_12102745_DEL [dm3] 3L_12109645_DEL [dm6]	AC	A	2.843e^-4	0.841	INTERGENIC
2L	17685167	2L_17685167_SNP [dm3] 2L_17685167_SNP [dm6]	A	T	2.844e^-4	0.841	INTRON CadN
3R	15003212	3R_15003212_SNP [dm3] 3R_19177490_SNP [dm6]	G	A	2.849e^-4	0.841	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	567487	3L_567487_SNP [dm3] 3L_567487_SNP [dm6]	G	T	2.851e^-4	0.841	INTRON hipk
2L	2739055	2L_2739055_SNP [dm3] 2L_2739055_SNP [dm6]	G	A	2.851e^-4	0.841	UPSTREAM Hrs INTRON CG31689
3R	11709496	3R_11709496_SNP [dm3] 3R_15883774_SNP [dm6]	G	C	2.855e^-4	0.841	INTERGENIC
3R	13589571	3R_13589571_SNP [dm3] 3R_17763849_SNP [dm6]	C	G	2.862e^-4	0.841	UPSTREAM TyrR INTERGENIC
2R	1098616	2R_1098616_SNP [dm3] 2R_5211111_SNP [dm6]	A	G	2.862e^-4	0.841	INTRON Nipped-A
3R	22864604	3R_22864604_SNP [dm3] 3R_27038882_SNP [dm6]	G	A	2.866e^-4	0.841	INTRON RYa-R
3L	11746941	3L_11746941_INS [dm3] 3L_11753841_INS [dm6]	G	GAAAAGAAGGCTTAAAGGCG...	2.866e^-4	0.841	INTRON CG6024
3R	9215655	3R_9215655_SNP [dm3] 3R_13389933_SNP [dm6]	A	C	2.868e^-4	0.841	INTRON CCHa2
3R	14141709	3R_14141709_SNP [dm3] 3R_18315987_SNP [dm6]	A	C	2.872e^-4	0.841	DOWNSTREAM CG31235 INTERGENIC
2L	4044015	2L_4044015_SNP [dm3] 2L_4044015_SNP [dm6]	C	G	2.876e^-4	0.841	INTRON ed
2L	10171211	2L_10171211_SNP [dm3] 2L_10171211_SNP [dm6]	G	A	2.880e^-4	0.841	INTRON CG44153
3L	17689196	3L_17689196_SNP [dm3] 3L_17696096_SNP [dm6]	T	G	2.890e^-4	0.841	INTRON Ccn
3L	17689203	3L_17689203_SNP [dm3] 3L_17696103_SNP [dm6]	A	G	2.890e^-4	0.841	INTRON Ccn
3L	17689215	3L_17689215_SNP [dm3] 3L_17696115_SNP [dm6]	A	T	2.890e^-4	0.841	INTRON Ccn
X	12675908	X_12675908_SNP [dm3] X_12781875_SNP [dm6]	A	G	2.891e^-4	0.841	INTRON CG32647
3L	18250821	3L_18250821_SNP [dm3] 3L_18257721_SNP [dm6]	T	A	2.898e^-4	0.841	INTERGENIC
3R	22262051	3R_22262051_INS [dm3] 3R_26436329_INS [dm6]	A	AATTATTA	2.901e^-4	0.841	INTERGENIC
2R	13657903	2R_13657903_SNP [dm3] 2R_17770398_SNP [dm6]	C	A	2.904e^-4	0.841	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6653953	3L_6653953_SNP [dm3] 3L_6660853_SNP [dm6]	G	C	2.904e^-4	0.841	INTERGENIC
2L	2077693	2L_2077693_SNP [dm3] 2L_2077693_SNP [dm6]	A	T	2.907e^-4	0.841	INTRON dpr3
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	2.908e^-4	0.841	INTRON haf & 1 other
2R	18496656	2R_18496656_SNP [dm3] 2R_22609151_SNP [dm6]	T	C	2.914e^-4	0.841	SYNONYMOUS_CODING Vps20 DOWNSTREAM CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10353546	2R_10353546_SNP [dm3] 2R_14466041_SNP [dm6]	G	A	2.915e^-4	0.841	DOWNSTREAM Oaz INTERGENIC
3L	7486080	3L_7486080_SNP [dm3] 3L_7492980_SNP [dm6]	A	G	2.917e^-4	0.841	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
3L	9359550	3L_9359550_SNP [dm3] 3L_9366450_SNP [dm6]	T	A	2.921e^-4	0.841	UPSTREAM CG4452 INTRON Klp67A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12877714	2R_12877714_SNP [dm3] 2R_16990209_SNP [dm6]	T	C	2.955e^-4	0.847	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6414560	X_6414560_SNP [dm3] X_6520527_SNP [dm6]	T	C	2.955e^-4	0.847	INTRON CG42340
2R	16657131	2R_16657131_SNP [dm3] 2R_20769626_SNP [dm6]	T	G	2.960e^-4	0.847	INTERGENIC
2R	13658257	2R_13658257_SNP [dm3] 2R_17770752_SNP [dm6]	T	A	2.962e^-4	0.847	NON_SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26036301	3R_26036301_SNP [dm3] 3R_30210579_SNP [dm6]	T	A	2.964e^-4	0.847	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2R	10914484	2R_10914484_SNP [dm3] 2R_15026979_SNP [dm6]	G	A	2.972e^-4	0.848	INTRON hbs	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	11342382	3R_11342382_SNP [dm3] 3R_15516660_SNP [dm6]	C	T	2.990e^-4	0.849	INTERGENIC
3L	15899956	3L_15899956_SNP [dm3] 3L_15906856_SNP [dm6]	G	A	3.004e^-4	0.849	SPLICE_SITE_REGION sff INTRON sff
2L	6410991	2L_6410991_SNP [dm3] 2L_6410991_SNP [dm6]	C	T	3.012e^-4	0.849	START_GAINED CG42368 UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1435021	2L_1435021_DEL [dm3] 2L_1435021_DEL [dm6]	CTC	G	3.018e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	15420567	3L_15420567_SNP [dm3] 3L_15427467_SNP [dm6]	C	T	3.026e^-4	0.849	INTERGENIC
3L	17937119	3L_17937119_SNP [dm3] 3L_17944019_SNP [dm6]	C	G	3.029e^-4	0.849	INTRON CG43174
X	13228302	X_13228302_SNP [dm3] X_13334269_SNP [dm6]	G	T	3.032e^-4	0.849	INTERGENIC
3L	14608279	3L_14608279_DEL [dm3] 3L_14615179_DEL [dm6]	TATTTAC	T	3.033e^-4	0.849	INTRON shd
3L	7505846	3L_7505846_SNP [dm3] 3L_7512746_SNP [dm6]	G	C	3.037e^-4	0.849	INTRON CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13180364	X_13180364_DEL [dm3] X_13286331_DEL [dm6]	TAT	T	3.051e^-4	0.849	UTR_5_PRIME CG15743 UPSTREAM HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	15862042	3L_15862042_MNP [dm3] 3L_15868942_MNP [dm6]	TTA	CAG	3.056e^-4	0.849	INTRON pHCl
3R	13597497	3R_13597497_SNP [dm3] 3R_17771775_SNP [dm6]	C	A	3.060e^-4	0.849	NON_SYNONYMOUS_CODING CG43102
2L	14629893	2L_14629893_SNP [dm3] 2L_14629893_SNP [dm6]	G	A	3.073e^-4	0.849	INTRON osp
X	8163466	X_8163466_SNP [dm3] X_8269433_SNP [dm6]	A	G	3.084e^-4	0.849	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
2R	10474595	2R_10474595_SNP [dm3] 2R_14587090_SNP [dm6]	G	A	3.090e^-4	0.849	UTR_3_PRIME ttv	TF binding site mE1_TFBS_zfh1
3L	9357333	3L_9357333_SNP [dm3] 3L_9364233_SNP [dm6]	C	A	3.095e^-4	0.849	UPSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_HSA
X	3124378	X_3124378_INS [dm3] X_3230345_INS [dm6]	G	GGGTATGGGGATGGGGATG...	3.096e^-4	0.849	INTRON dnc
2L	12176186	2L_12176186_SNP [dm3] 2L_12176186_SNP [dm6]	C	T	3.097e^-4	0.849	INTRON aret & 1 other
2L	2738399	2L_2738399_SNP [dm3] 2L_2738399_SNP [dm6]	C	T	3.099e^-4	0.849	DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5674668	2R_5674668_SNP [dm3] 2R_9787163_SNP [dm6]	T	C	3.102e^-4	0.849	INTRON CG1688
2L	10510597	2L_10510597_SNP [dm3] 2L_10510597_SNP [dm6]	C	T	3.112e^-4	0.849	UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	3525176	3L_3525176_SNP [dm3] 3L_3525176_SNP [dm6]	C	A	3.115e^-4	0.849	INTRON Eip63E
3L	3525181	3L_3525181_SNP [dm3] 3L_3525181_SNP [dm6]	T	G	3.115e^-4	0.849	INTRON Eip63E
3L	3525187	3L_3525187_SNP [dm3] 3L_3525187_SNP [dm6]	T	C	3.115e^-4	0.849	INTRON Eip63E
2L	444596	2L_444596_SNP [dm3] 2L_444596_SNP [dm6]	C	T	3.115e^-4	0.849	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_sens
3R	18609496	3R_18609496_SNP [dm3] 3R_22783774_SNP [dm6]	A	T	3.119e^-4	0.849	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5226885	X_5226885_SNP [dm3] X_5332852_SNP [dm6]	C	T	3.123e^-4	0.849	DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3642145	3L_3642145_SNP [dm3] 3L_3642145_SNP [dm6]	G	A	3.134e^-4	0.849	INTRON dar1
3L	3525186	3L_3525186_SNP [dm3] 3L_3525186_SNP [dm6]	C	A	3.136e^-4	0.849	INTRON Eip63E
3R	25948732	3R_25948732_SNP [dm3] 3R_30123010_SNP [dm6]	T	C	3.142e^-4	0.849	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
X	9113122	X_9113122_SNP [dm3] X_9219089_SNP [dm6]	G	A	3.155e^-4	0.849	SYNONYMOUS_CODING t
3R	21973177	3R_21973177_SNP [dm3] 3R_26147455_SNP [dm6]	A	T	3.162e^-4	0.849	INTERGENIC
3L	10616407	3L_10616407_SNP [dm3] 3L_10623307_SNP [dm6]	C	T	3.165e^-4	0.849	NON_SYNONYMOUS_CODING CG42521
2R	18889247	2R_18889247_SNP [dm3] 2R_23001724_SNP [dm6]	T	C	3.167e^-4	0.849	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	22211288	3R_22211288_SNP [dm3] 3R_26385566_SNP [dm6]	C	T	3.182e^-4	0.849	INTERGENIC
2L	2111794	2L_2111794_SNP [dm3] 2L_2111794_SNP [dm6]	T	C	3.188e^-4	0.849	INTERGENIC
3R	11709410	3R_11709410_SNP [dm3] 3R_15883688_SNP [dm6]	G	A	3.194e^-4	0.849	INTERGENIC
3L	7603947	3L_7603947_SNP [dm3] 3L_7610847_SNP [dm6]	A	G	3.196e^-4	0.849	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13253822	3R_13253822_SNP [dm3] 3R_17428100_SNP [dm6]	G	A	3.201e^-4	0.849	INTRON CG5873	TF binding site BDTNP1_TFBS_twi
3L	3429153	3L_3429153_SNP [dm3] 3L_3429153_SNP [dm6]	T	A	3.211e^-4	0.849	INTRON eIF5B
3L	15507712	3L_15507712_SNP [dm3] 3L_15514612_SNP [dm6]	C	T	3.218e^-4	0.849	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14092184	2R_14092184_SNP [dm3] 2R_18204679_SNP [dm6]	A	C	3.225e^-4	0.849	INTERGENIC
3L	12103556	3L_12103556_SNP [dm3] 3L_12110456_SNP [dm6]	C	T	3.225e^-4	0.849	INTERGENIC
3L	15899276	3L_15899276_SNP [dm3] 3L_15906176_SNP [dm6]	C	G	3.232e^-4	0.849	SYNONYMOUS_CODING sff
X	3895591	X_3895591_SNP [dm3] X_4001558_SNP [dm6]	C	T	3.235e^-4	0.849	EXON CR43298
2R	11181149	2R_11181149_SNP [dm3] 2R_15293644_SNP [dm6]	A	C	3.247e^-4	0.849	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
2R	13824988	2R_13824988_SNP [dm3] 2R_17937483_SNP [dm6]	T	C	3.256e^-4	0.849	INTERGENIC
3R	4707339	3R_4707339_SNP [dm3] 3R_8881617_SNP [dm6]	A	G	3.260e^-4	0.849	INTRON pyd
3R	12986962	3R_12986962_SNP [dm3] 3R_17161240_SNP [dm6]	A	T	3.267e^-4	0.849	INTRON Mur89F
3L	10232137	3L_10232137_SNP [dm3] 3L_10239037_SNP [dm6]	C	T	3.269e^-4	0.849	INTERGENIC
3L	6191560	3L_6191560_SNP [dm3] 3L_6198460_SNP [dm6]	G	A	3.278e^-4	0.849	UTR_3_PRIME Trn
2L	444671	2L_444671_SNP [dm3] 2L_444671_SNP [dm6]	A	T	3.283e^-4	0.849	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5715586	X_5715586_SNP [dm3] X_5821553_SNP [dm6]	C	T	3.302e^-4	0.849	INTRON CG15765
3R	14989624	3R_14989624_SNP [dm3] 3R_19163902_SNP [dm6]	C	T	3.304e^-4	0.849	UPSTREAM sqz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6154653	2L_6154653_SNP [dm3] 2L_6154653_SNP [dm6]	A	C	3.315e^-4	0.849	UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_chinmo
3R	23248863	3R_23248863_SNP [dm3] 3R_27423141_SNP [dm6]	T	C	3.321e^-4	0.849	INTRON side
X	6815306	X_6815306_SNP [dm3] X_6921273_SNP [dm6]	A	C	3.327e^-4	0.849	INTRON CG14431
2L	2094277	2L_2094277_SNP [dm3] 2L_2094277_SNP [dm6]	T	C	3.330e^-4	0.849	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
2R	19937479	2R_19937479_SNP [dm3] 2R_24049956_SNP [dm6]	G	T	3.334e^-4	0.849	NON_SYNONYMOUS_CODING sei
2L	16879762	2L_16879762_SNP [dm3] 2L_16879762_SNP [dm6]	T	G	3.336e^-4	0.849	NON_SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG32832	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14043039	3L_14043039_SNP [dm3] 3L_14049939_SNP [dm6]	G	A	3.342e^-4	0.849	UPSTREAM blue INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3271417	2L_3271417_SNP [dm3] 2L_3271417_SNP [dm6]	A	G	3.347e^-4	0.849	NON_SYNONYMOUS_CODING CG3347
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	3.355e^-4	0.849	INTRON CG18769 & 1 other
2L	6337725	2L_6337725_SNP [dm3] 2L_6337725_SNP [dm6]	T	G	3.357e^-4	0.849	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13658159	2R_13658159_SNP [dm3] 2R_17770654_SNP [dm6]	T	C	3.360e^-4	0.849	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17697496	2L_17697496_SNP [dm3] 2L_17697496_SNP [dm6]	G	T	3.363e^-4	0.849	INTRON CadN
2R	18752556	2R_18752556_DEL [dm3] 2R_22865033_DEL [dm6]	ATG	A	3.366e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18365825	3L_18365825_DEL [dm3] 3L_18372725_DEL [dm6]	AGGC	T	3.369e^-4	0.849	INTERGENIC
2R	10387920	2R_10387920_SNP [dm3] 2R_14500415_SNP [dm6]	C	T	3.373e^-4	0.849	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23255165	3R_23255165_SNP [dm3] 3R_27429443_SNP [dm6]	C	T	3.376e^-4	0.849	INTRON side
3L	17488602	3L_17488602_SNP [dm3] 3L_17495502_SNP [dm6]	G	A	3.381e^-4	0.849	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	6918060	3R_6918060_SNP [dm3] 3R_11092338_SNP [dm6]	A	T	3.382e^-4	0.849	INTERGENIC
3R	14141794	3R_14141794_SNP [dm3] 3R_18316072_SNP [dm6]	T	C	3.395e^-4	0.849	DOWNSTREAM CG31235 INTERGENIC
3L	3027748	3L_3027748_SNP [dm3] 3L_3027748_SNP [dm6]	T	G	3.397e^-4	0.849	INTERGENIC
3R	18749072	3R_18749072_SNP [dm3] 3R_22923350_SNP [dm6]	T	C	3.398e^-4	0.849	UPSTREAM CG6660 INTRON klg
3L	15863153	3L_15863153_SNP [dm3] 3L_15870053_SNP [dm6]	T	G	3.400e^-4	0.849	NON_SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
2L	11311075	2L_11311075_SNP [dm3] 2L_11311075_SNP [dm6]	C	G	3.406e^-4	0.849	INTERGENIC
3R	20148966	3R_20148966_SNP [dm3] 3R_24323244_SNP [dm6]	G	C	3.407e^-4	0.849	NON_SYNONYMOUS_CODING BRWD3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16711976	2L_16711976_DEL [dm3] 2L_16711976_DEL [dm6]	CGGT	C	3.408e^-4	0.849	INTRON CG31808
3L	1424212	3L_1424212_SNP [dm3] 3L_1424212_SNP [dm6]	C	T	3.410e^-4	0.849	UPSTREAM CG9173 INTRON Ptp61F
2L	16595250	2L_16595250_SNP [dm3] 2L_16595250_SNP [dm6]	A	T	3.411e^-4	0.849	INTRON CG42389
2R	4418370	2R_4418370_SNP [dm3] 2R_8530865_SNP [dm6]	C	T	3.414e^-4	0.849	INTRON mtt
3R	22939740	3R_22939740_SNP [dm3] 3R_27114018_SNP [dm6]	C	A	3.417e^-4	0.849	SYNONYMOUS_CODING CG5815
X	15406383	X_15406383_SNP [dm3] X_15512350_SNP [dm6]	G	A	3.419e^-4	0.849	UTR_3_PRIME Ac13E
3R	22935032	3R_22935032_SNP [dm3] 3R_27109310_SNP [dm6]	C	A	3.420e^-4	0.849	SPLICE_SITE_REGION gb UPSTREAM CR45209 INTRON gb
2L	14478561	2L_14478561_SNP [dm3] 2L_14478561_SNP [dm6]	T	A	3.424e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10901885	3L_10901885_SNP [dm3] 3L_10908785_SNP [dm6]	G	A	3.434e^-4	0.849	INTERGENIC
3L	17978870	3L_17978870_SNP [dm3] 3L_17985770_SNP [dm6]	G	A	3.435e^-4	0.849	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	14003595	2R_14003595_SNP [dm3] 2R_18116090_SNP [dm6]	C	A	3.453e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10621277	2R_10621277_SNP [dm3] 2R_14733772_SNP [dm6]	G	C	3.464e^-4	0.849	INTERGENIC
2R	17760339	2R_17760339_SNP [dm3] 2R_21872834_SNP [dm6]	A	G	3.474e^-4	0.849	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	6254797	2R_6254797_SNP [dm3] 2R_10367292_SNP [dm6]	A	T	3.481e^-4	0.849	INTRON CG42732
3R	13571654	3R_13571654_SNP [dm3] 3R_17745932_SNP [dm6]	A	T	3.484e^-4	0.849	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8562943	3R_8562943_DEL [dm3] 3R_12737221_DEL [dm6]	AACCACA	A	3.484e^-4	0.849	INTERGENIC
3L	15772958	3L_15772958_SNP [dm3] 3L_15779858_SNP [dm6]	A	C	3.486e^-4	0.849	INTERGENIC
3L	18746849	3L_18746849_SNP [dm3] 3L_18753749_SNP [dm6]	T	G	3.486e^-4	0.849	INTRON ftz-f1
2R	7504263	2R_7504263_SNP [dm3] 2R_11616758_SNP [dm6]	A	G	3.488e^-4	0.849	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3R	21971962	3R_21971962_SNP [dm3] 3R_26146240_SNP [dm6]	T	C	3.489e^-4	0.849	INTERGENIC
2L	17723903	2L_17723903_SNP [dm3] 2L_17723903_SNP [dm6]	C	A	3.489e^-4	0.849	INTRON CadN
3L	7602189	3L_7602189_SNP [dm3] 3L_7609089_SNP [dm6]	A	G	3.496e^-4	0.849	INTRON CG33275
2R	439683	2R_439683_SNP [dm3] 2R_4552178_SNP [dm6]	T	G	3.496e^-4	0.849	INTRON Stlk	transposable element FlyBase
3R	15672564	3R_15672564_SNP [dm3] 3R_19846842_SNP [dm6]	T	C	3.499e^-4	0.849	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3R	13724732	3R_13724732_SNP [dm3] 3R_17899010_SNP [dm6]	T	A	3.501e^-4	0.849	INTRON Rim
3R	23252725	3R_23252725_SNP [dm3] 3R_27427003_SNP [dm6]	T	G	3.502e^-4	0.849	INTRON side
2L	3124677	2L_3124677_SNP [dm3] 2L_3124677_SNP [dm6]	G	C	3.514e^-4	0.849	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	399804	2R_399804_DEL [dm3] 2R_4512299_DEL [dm6]	TCGTTTTTAACGTATGTAGT...	T	3.518e^-4	0.849	INTERGENIC	transposable element FlyBase
3L	7744773	3L_7744773_SNP [dm3] 3L_7751673_SNP [dm6]	C	T	3.531e^-4	0.849	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
3R	9215614	3R_9215614_SNP [dm3] 3R_13389892_SNP [dm6]	A	G	3.533e^-4	0.849	INTRON CCHa2
3R	9215649	3R_9215649_SNP [dm3] 3R_13389927_SNP [dm6]	G	A	3.533e^-4	0.849	INTRON CCHa2
3R	9215652	3R_9215652_SNP [dm3] 3R_13389930_SNP [dm6]	T	G	3.533e^-4	0.849	INTRON CCHa2
2R	12798916	2R_12798916_SNP [dm3] 2R_16911411_SNP [dm6]	C	A	3.535e^-4	0.849	INTERGENIC
X	22245097	X_22245097_SNP [dm3] X_22843261_SNP [dm6]	T	C	3.540e^-4	0.849	INTRON fog & 1 other	transposable element FlyBase
3L	15863067	3L_15863067_SNP [dm3] 3L_15869967_SNP [dm6]	G	C	3.541e^-4	0.849	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	3.541e^-4	0.849	INTRON Fife
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	3.541e^-4	0.849	INTERGENIC
3R	22864150	3R_22864150_SNP [dm3] 3R_27038428_SNP [dm6]	C	T	3.552e^-4	0.849	INTRON RYa-R
3R	10649910	3R_10649910_SNP [dm3] 3R_14824188_SNP [dm6]	C	T	3.554e^-4	0.849	NON_SYNONYMOUS_CODING btsz
3L	18949547	3L_18949547_SNP [dm3] 3L_18956447_SNP [dm6]	T	C	3.555e^-4	0.849	INTERGENIC
2R	13644175	2R_13644175_SNP [dm3] 2R_17756670_SNP [dm6]	C	A	3.562e^-4	0.849	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8434174	X_8434174_SNP [dm3] X_8540141_SNP [dm6]	G	A	3.571e^-4	0.849	INTRON Nrg
3R	9215626	3R_9215626_SNP [dm3] 3R_13389904_SNP [dm6]	A	G	3.571e^-4	0.849	INTRON CCHa2
3L	5787450	3L_5787450_SNP [dm3] 3L_5794350_SNP [dm6]	T	G	3.590e^-4	0.849	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	1720661	2L_1720661_INS [dm3] 2L_1720661_INS [dm6]	T	TATACCAT	3.601e^-4	0.849	INTRON Rim2
X	19661393	X_19661393_SNP [dm3] X_19767360_SNP [dm6]	C	T	3.603e^-4	0.849	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25525099	3R_25525099_SNP [dm3] 3R_29699377_SNP [dm6]	A	G	3.605e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22946478	3R_22946478_SNP [dm3] 3R_27120756_SNP [dm6]	G	A	3.611e^-4	0.849	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15969064	2R_15969064_SNP [dm3] 2R_20081559_SNP [dm6]	A	C	3.619e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20338347	3L_20338347_SNP [dm3] 3L_20345247_SNP [dm6]	T	C	3.624e^-4	0.849	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
3L	5623788	3L_5623788_SNP [dm3] 3L_5630688_SNP [dm6]	G	A	3.626e^-4	0.849	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	10762752	3L_10762752_SNP [dm3] 3L_10769652_SNP [dm6]	C	G	3.626e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	16612505	2L_16612505_SNP [dm3] 2L_16612505_SNP [dm6]	C	G	3.630e^-4	0.849	INTRON CG42389
2L	5256189	2L_5256189_INS [dm3] 2L_5256189_INS [dm6]	T	TG	3.631e^-4	0.849	INTRON tkv	TF binding site mE1_TFBS_cad
3R	23248864	3R_23248864_SNP [dm3] 3R_27423142_SNP [dm6]	C	T	3.633e^-4	0.849	INTRON side
2L	14629859	2L_14629859_SNP [dm3] 2L_14629859_SNP [dm6]	T	C	3.634e^-4	0.849	INTRON osp
3R	21455243	3R_21455243_SNP [dm3] 3R_25629521_SNP [dm6]	G	T	3.637e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10901899	3L_10901899_SNP [dm3] 3L_10908799_SNP [dm6]	G	C	3.639e^-4	0.849	INTERGENIC
2R	18752569	2R_18752569_SNP [dm3] 2R_22865046_SNP [dm6]	T	C	3.651e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16706705	3L_16706705_SNP [dm3] 3L_16713605_SNP [dm6]	C	T	3.653e^-4	0.849	UPSTREAM Dab INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	6173897	2L_6173897_SNP [dm3] 2L_6173897_SNP [dm6]	A	G	3.654e^-4	0.849	INTERGENIC
X	18643405	X_18643405_SNP [dm3] X_18749372_SNP [dm6]	G	A	3.664e^-4	0.849	INTERGENIC
3R	11157417	3R_11157417_SNP [dm3] 3R_15331695_SNP [dm6]	T	A	3.664e^-4	0.849	UTR_3_PRIME FK506-bp1 DOWNSTREAM mRpL9	TF binding site mE1_TFBS_sens
3L	18120557	3L_18120557_DEL [dm3] 3L_18127457_DEL [dm6]	AAATGGGCA	A	3.669e^-4	0.849	INTERGENIC	insulator Insulator_Class_II.mE01
2R	11761550	2R_11761550_SNP [dm3] 2R_15874045_SNP [dm6]	G	T	3.674e^-4	0.849	INTRON sli	TF binding site BDTNP1_TFBS_sna
2R	7156596	2R_7156596_SNP [dm3] 2R_11269091_SNP [dm6]	C	T	3.677e^-4	0.849	INTRON Cpr47Ef
3L	2487549	3L_2487549_SNP [dm3] 3L_2487549_SNP [dm6]	G	A	3.679e^-4	0.849	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	12986990	3R_12986990_SNP [dm3] 3R_17161268_SNP [dm6]	G	C	3.680e^-4	0.849	INTRON Mur89F
2L	12553088	2L_12553088_SNP [dm3] 2L_12553088_SNP [dm6]	C	G	3.687e^-4	0.849	INTERGENIC
2L	14629812	2L_14629812_SNP [dm3] 2L_14629812_SNP [dm6]	A	T	3.688e^-4	0.849	INTRON osp
3R	23251596	3R_23251596_SNP [dm3] 3R_27425874_SNP [dm6]	A	T	3.691e^-4	0.849	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3656240	3L_3656240_SNP [dm3] 3L_3656240_SNP [dm6]	A	C	3.692e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	414921	2R_414921_SNP [dm3] 2R_4527416_SNP [dm6]	A	T	3.697e^-4	0.849	INTERGENIC	transposable element FlyBase
2L	17518730	2L_17518730_SNP [dm3] 2L_17518730_SNP [dm6]	C	T	3.705e^-4	0.849	SYNONYMOUS_CODING Dhc36C
X	5236950	X_5236950_SNP [dm3] X_5342917_SNP [dm6]	A	G	3.707e^-4	0.849	INTRON SK
3L	10217543	3L_10217543_SNP [dm3] 3L_10224443_SNP [dm6]	C	A	3.712e^-4	0.849	INTRON scramb1
2L	18111828	2L_18111828_SNP [dm3] 2L_18111828_SNP [dm6]	G	T	3.713e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3174718	3L_3174718_SNP [dm3] 3L_3174718_SNP [dm6]	G	A	3.714e^-4	0.849	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15123806	3R_15123806_SNP [dm3] 3R_19298084_SNP [dm6]	C	G	3.720e^-4	0.849	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23249022	3R_23249022_SNP [dm3] 3R_27423300_SNP [dm6]	A	T	3.721e^-4	0.849	INTRON side
X	5226733	X_5226733_SNP [dm3] X_5332700_SNP [dm6]	C	A	3.721e^-4	0.849	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22935334	3R_22935334_SNP [dm3] 3R_27109612_SNP [dm6]	G	C	3.723e^-4	0.849	INTRON gb EXON CR45209
2R	7499428	2R_7499428_SNP [dm3] 2R_11611923_SNP [dm6]	C	A	3.725e^-4	0.849	INTRON tou	TF binding site BDTNP1_TFBS_dl
2L	8984412	2L_8984412_SNP [dm3] 2L_8984412_SNP [dm6]	C	T	3.728e^-4	0.849	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20078818	3L_20078818_SNP [dm3] 3L_20085718_SNP [dm6]	G	T	3.731e^-4	0.849	INTRON sNPF-R
3L	10818513	3L_10818513_SNP [dm3] 3L_10825413_SNP [dm6]	T	C	3.732e^-4	0.849	EXON CR45246
X	7086276	X_7086276_SNP [dm3] X_7192243_SNP [dm6]	A	G	3.735e^-4	0.849	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
2L	14629824	2L_14629824_SNP [dm3] 2L_14629824_SNP [dm6]	C	T	3.743e^-4	0.849	INTRON osp
3R	14179528	3R_14179528_SNP [dm3] 3R_18353806_SNP [dm6]	A	G	3.745e^-4	0.849	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6624158	2L_6624158_SNP [dm3] 2L_6624158_SNP [dm6]	C	T	3.748e^-4	0.849	SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
3R	23269721	3R_23269721_SNP [dm3] 3R_27443999_SNP [dm6]	A	T	3.748e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22312347	3R_22312347_SNP [dm3] 3R_26486625_SNP [dm6]	T	C	3.750e^-4	0.849	INTRON plum
3L	4692547	3L_4692547_INS [dm3] 3L_4692547_INS [dm6]	G	GC	3.750e^-4	0.849	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4821048	2L_4821048_SNP [dm3] 2L_4821048_SNP [dm6]	C	A	3.759e^-4	0.849	UPSTREAM CG15628 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3770251	2R_3770251_SNP [dm3] 2R_7882746_SNP [dm6]	A	C	3.765e^-4	0.849	INTRON Dgk
3L	18360345	3L_18360345_SNP [dm3] 3L_18367245_SNP [dm6]	C	T	3.766e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7185666	2L_7185666_SNP [dm3] 2L_7185666_SNP [dm6]	C	T	3.773e^-4	0.849	UTR_3_PRIME CG4496 DOWNSTREAM CG4495
3R	13580404	3R_13580404_SNP [dm3] 3R_17754682_SNP [dm6]	G	A	3.775e^-4	0.849	INTRON TyrR
3L	4692530	3L_4692530_SNP [dm3] 3L_4692530_SNP [dm6]	T	C	3.785e^-4	0.849	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10678603	2R_10678603_DEL [dm3] 2R_14791098_DEL [dm6]	TAGT	T	3.796e^-4	0.849	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13228307	X_13228307_INS [dm3] X_13334274_INS [dm6]	A	AG	3.798e^-4	0.849	INTERGENIC
X	5293295	X_5293295_SNP [dm3] X_5399262_SNP [dm6]	G	T	3.802e^-4	0.849	INTRON SK
2R	11680605	2R_11680605_SNP [dm3] 2R_15793100_SNP [dm6]	G	T	3.804e^-4	0.849	UPSTREAM tun INTRON Zasp52
3R	10765723	3R_10765723_SNP [dm3] 3R_14940001_SNP [dm6]	G	C	3.816e^-4	0.849	INTERGENIC
2R	17209052	2R_17209052_SNP [dm3] 2R_21321547_SNP [dm6]	A	G	3.823e^-4	0.849	SYNONYMOUS_CODING CG30394
3R	23250529	3R_23250529_SNP [dm3] 3R_27424807_SNP [dm6]	A	C	3.834e^-4	0.849	INTRON side
3L	12821358	3L_12821358_SNP [dm3] 3L_12828258_SNP [dm6]	G	A	3.840e^-4	0.849	UPSTREAM CG10960 INTRON CG10960
3R	5955901	3R_5955901_SNP [dm3] 3R_10130179_SNP [dm6]	G	A	3.849e^-4	0.849	INTRON tws	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22208558	2L_22208558_SNP [dm3] 2L_22208558_SNP [dm6]	C	T	3.851e^-4	0.849	INTRON Ir40a	transposable element FlyBase
3R	22938494	3R_22938494_SNP [dm3] 3R_27112772_SNP [dm6]	G	A	3.856e^-4	0.849	UPSTREAM gb INTRON CG5815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10648165	3R_10648165_SNP [dm3] 3R_14822443_SNP [dm6]	G	A	3.859e^-4	0.849	INTRON btsz
2L	6135583	2L_6135583_SNP [dm3] 2L_6135583_SNP [dm6]	C	T	3.862e^-4	0.849	INTERGENIC
3L	1566393	3L_1566393_SNP [dm3] 3L_1566393_SNP [dm6]	G	A	3.870e^-4	0.849	SYNONYMOUS_CODING CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	16582366	3L_16582366_SNP [dm3] 3L_16589266_SNP [dm6]	G	A	3.875e^-4	0.849	SYNONYMOUS_CODING l_3_73Ah DOWNSTREAM tra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3437771	2L_3437771_SNP [dm3] 2L_3437771_SNP [dm6]	T	G	3.877e^-4	0.849	INTERGENIC
2L	17881180	2L_17881180_SNP [dm3] 2L_17881180_SNP [dm6]	G	A	3.898e^-4	0.849	INTERGENIC
3R	9215715	3R_9215715_SNP [dm3] 3R_13389993_SNP [dm6]	C	A	3.899e^-4	0.849	INTRON CCHa2
2L	2325690	2L_2325690_SNP [dm3] 2L_2325690_SNP [dm6]	G	C	3.900e^-4	0.849	INTRON CG9967 & 1 other
3L	15890493	3L_15890493_SNP [dm3] 3L_15897393_SNP [dm6]	G	A	3.902e^-4	0.849	INTRON pHCl
2L	11925524	2L_11925524_SNP [dm3] 2L_11925524_SNP [dm6]	C	T	3.903e^-4	0.849	INTRON Pde1c
3L	12102610	3L_12102610_SNP [dm3] 3L_12109510_SNP [dm6]	A	C	3.916e^-4	0.849	INTERGENIC
3R	19210639	3R_19210639_SNP [dm3] 3R_23384917_SNP [dm6]	C	A	3.919e^-4	0.849	UPSTREAM CG4393 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17839136	3R_17839136_SNP [dm3] 3R_22013414_SNP [dm6]	A	G	3.942e^-4	0.849	UTR_3_PRIME Eip93F
3L	20567121	3L_20567121_SNP [dm3] 3L_20574021_SNP [dm6]	T	C	3.943e^-4	0.849	INTERGENIC
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	3.944e^-4	0.849	SYNONYMOUS_CODING btv
2R	11687638	2R_11687638_SNP [dm3] 2R_15800133_SNP [dm6]	C	T	3.944e^-4	0.849	INTRON Zasp52 & 1 other
3R	22485416	3R_22485416_SNP [dm3] 3R_26659694_SNP [dm6]	T	G	3.949e^-4	0.849	INTRON beat-VII
X	9637933	X_9637933_SNP [dm3] X_9743900_SNP [dm6]	C	T	3.950e^-4	0.849	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	8686797	X_8686797_SNP [dm3] X_8792764_SNP [dm6]	T	A	3.951e^-4	0.849	INTRON Lim1
2L	6154575	2L_6154575_SNP [dm3] 2L_6154575_SNP [dm6]	A	T	3.957e^-4	0.849	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_chinmo
3R	3754594	3R_3754594_SNP [dm3] 3R_7928872_SNP [dm6]	C	T	3.965e^-4	0.849	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7523908	2L_7523908_SNP [dm3] 2L_7523908_SNP [dm6]	C	T	3.966e^-4	0.849	INTRON RapGAP1
3L	14108711	3L_14108711_SNP [dm3] 3L_14115611_SNP [dm6]	G	A	3.972e^-4	0.849	INTRON Sox21b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2123124	3L_2123124_SNP [dm3] 3L_2123124_SNP [dm6]	A	T	3.973e^-4	0.849	INTRON zormin
3R	9867233	3R_9867233_SNP [dm3] 3R_14041511_SNP [dm6]	T	C	3.983e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8163514	X_8163514_SNP [dm3] X_8269481_SNP [dm6]	G	A	3.985e^-4	0.849	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3L	2630465	3L_2630465_SNP [dm3] 3L_2630465_SNP [dm6]	G	A	3.986e^-4	0.849	UPSTREAM Pxn EXON CR45660
X	7086324	X_7086324_SNP [dm3] X_7192291_SNP [dm6]	T	A	3.990e^-4	0.849	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3L	17834954	3L_17834954_SNP [dm3] 3L_17841854_SNP [dm6]	T	A	3.996e^-4	0.849	SYNONYMOUS_CODING CG5567 UPSTREAM CG5577 EXON CR45175	TF binding site mE1_TFBS_sens
3R	10649931	3R_10649931_SNP [dm3] 3R_14824209_SNP [dm6]	A	G	3.996e^-4	0.849	NON_SYNONYMOUS_CODING btsz SPLICE_SITE_REGION btsz INTRON btsz
2R	18496705	2R_18496705_SNP [dm3] 2R_22609200_SNP [dm6]	C	T	3.999e^-4	0.849	NON_SYNONYMOUS_CODING Vps20 DOWNSTREAM CG4329	TF binding site mE1_TFBS_sens
3L	10217615	3L_10217615_SNP [dm3] 3L_10224515_SNP [dm6]	A	G	4.007e^-4	0.849	INTRON scramb1
2R	18892885	2R_18892885_SNP [dm3] 2R_23005362_SNP [dm6]	C	T	4.009e^-4	0.849	INTRON twi
2L	799626	2L_799626_SNP [dm3] 2L_799626_SNP [dm6]	T	A	4.010e^-4	0.849	UPSTREAM CR45259 INTERGENIC
X	9755715	X_9755715_SNP [dm3] X_9861682_SNP [dm6]	T	C	4.011e^-4	0.849	INTERGENIC
X	9113092	X_9113092_SNP [dm3] X_9219059_SNP [dm6]	G	A	4.013e^-4	0.849	SYNONYMOUS_CODING t	TF binding site mE1_TFBS_chinmo
X	7328648	X_7328648_SNP [dm3] X_7434615_SNP [dm6]	G	A	4.016e^-4	0.849	INTERGENIC
3R	3408231	3R_3408231_SNP [dm3] 3R_7582509_SNP [dm6]	C	A	4.023e^-4	0.849	INTRON CG34127
2L	8511093	2L_8511093_SNP [dm3] 2L_8511093_SNP [dm6]	C	G	4.029e^-4	0.849	NON_SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8987524	2R_8987524_SNP [dm3] 2R_13100019_SNP [dm6]	A	G	4.031e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7361015	2L_7361015_SNP [dm3] 2L_7361015_SNP [dm6]	G	T	4.037e^-4	0.849	INTERGENIC
3R	12970527	3R_12970527_SNP [dm3] 3R_17144805_SNP [dm6]	T	G	4.037e^-4	0.849	UTR_3_PRIME m-cup DOWNSTREAM m-cup
X	7086275	X_7086275_SNP [dm3] X_7192242_SNP [dm6]	G	A	4.042e^-4	0.849	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3L	4692524	3L_4692524_SNP [dm3] 3L_4692524_SNP [dm6]	T	C	4.042e^-4	0.849	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12580827	2L_12580827_SNP [dm3] 2L_12580827_SNP [dm6]	C	T	4.056e^-4	0.849	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12821515	3L_12821515_SNP [dm3] 3L_12828415_SNP [dm6]	C	T	4.058e^-4	0.849	UPSTREAM CG10960 INTRON CG10960
3L	15117444	3L_15117444_SNP [dm3] 3L_15124344_SNP [dm6]	T	A	4.065e^-4	0.849	INTRON Cep135 & 1 other
3L	13320607	3L_13320607_SNP [dm3] 3L_13327507_SNP [dm6]	G	C	4.069e^-4	0.849	INTERGENIC
3L	14281204	3L_14281204_SNP [dm3] 3L_14288104_SNP [dm6]	T	A	4.082e^-4	0.849	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
2L	18622039	2L_18622039_SNP [dm3] 2L_18622039_SNP [dm6]	G	A	4.084e^-4	0.849	INTRON MESR3
3L	9857197	3L_9857197_SNP [dm3] 3L_9864097_SNP [dm6]	T	A	4.087e^-4	0.849	SPLICE_SITE_REGION iPLA2-VIA UTR_5_PRIME iPLA2-VIA UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2726322	3L_2726322_SNP [dm3] 3L_2726322_SNP [dm6]	A	G	4.089e^-4	0.849	INTRON Mrtf
2L	1033626	2L_1033626_SNP [dm3] 2L_1033626_SNP [dm6]	C	A	4.094e^-4	0.849	INTRON IA-2
3R	22928844	3R_22928844_SNP [dm3] 3R_27103122_SNP [dm6]	C	T	4.103e^-4	0.849	SYNONYMOUS_STOP CG6074 DOWNSTREAM CG17189
3L	7864437	3L_7864437_SNP [dm3] 3L_7871337_SNP [dm6]	C	T	4.106e^-4	0.849	INTRON CG32365
3R	21795467	3R_21795467_SNP [dm3] 3R_25969745_SNP [dm6]	A	C	4.107e^-4	0.849	UPSTREAM CG42261 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	6999930	3L_6999930_SNP [dm3] 3L_7006830_SNP [dm6]	A	G	4.109e^-4	0.849	INTRON Mp
3L	1266638	3L_1266638_DEL [dm3] 3L_1266638_DEL [dm6]	AAAAGG	A	4.116e^-4	0.849	INTRON CG9134
3L	16061056	3L_16061056_SNP [dm3] 3L_16067956_SNP [dm6]	A	C	4.120e^-4	0.849	INTRON Mbs	TF binding site mE1_TFBS_cad
3L	5681304	3L_5681304_SNP [dm3] 3L_5688204_SNP [dm6]	C	T	4.126e^-4	0.849	INTRON sif
2L	4981873	2L_4981873_DEL [dm3] 2L_4981873_DEL [dm6]	TGAATT	T	4.127e^-4	0.849	UTR_5_PRIME CG34126 UPSTREAM CG8892	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23754316	3R_23754316_SNP [dm3] 3R_27928594_SNP [dm6]	A	T	4.128e^-4	0.849	UPSTREAM CG31053 INTRON mino
2R	19040725	2R_19040725_SNP [dm3] 2R_23153202_SNP [dm6]	A	G	4.135e^-4	0.849	UTR_3_PRIME CG43207 UPSTREAM CG9899
3L	11538711	3L_11538711_SNP [dm3] 3L_11545611_SNP [dm6]	T	C	4.135e^-4	0.849	INTRON Mob2
3L	13840941	3L_13840941_SNP [dm3] 3L_13847841_SNP [dm6]	A	T	4.148e^-4	0.849	INTRON Hml
3L	7085199	3L_7085199_SNP [dm3] 3L_7092099_SNP [dm6]	T	A	4.155e^-4	0.849	INTERGENIC
2R	18752563	2R_18752563_SNP [dm3] 2R_22865040_SNP [dm6]	T	A	4.161e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23128112	3R_23128112_SNP [dm3] 3R_27302390_SNP [dm6]	A	G	4.172e^-4	0.849	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	550921	3L_550921_SNP [dm3] 3L_550921_SNP [dm6]	A	G	4.172e^-4	0.849	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13725546	3R_13725546_SNP [dm3] 3R_17899824_SNP [dm6]	A	T	4.175e^-4	0.849	INTRON Rim
3L	17832463	3L_17832463_SNP [dm3] 3L_17839363_SNP [dm6]	C	A	4.177e^-4	0.849	UTR_3_PRIME Grd DOWNSTREAM CG5577
2L	13724824	2L_13724824_SNP [dm3] 2L_13724824_SNP [dm6]	C	A	4.178e^-4	0.849	INTERGENIC
3L	10158776	3L_10158776_SNP [dm3] 3L_10165676_SNP [dm6]	C	T	4.180e^-4	0.849	DOWNSTREAM CG6628 INTRON dpr10
X	4473796	X_4473796_SNP [dm3] X_4579763_SNP [dm6]	G	A	4.184e^-4	0.849	INTRON CR32773
3L	13320524	3L_13320524_SNP [dm3] 3L_13327424_SNP [dm6]	G	T	4.194e^-4	0.849	INTERGENIC
2L	14478426	2L_14478426_SNP [dm3] 2L_14478426_SNP [dm6]	T	A	4.200e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19765644	X_19765644_SNP [dm3] X_19871611_SNP [dm6]	T	G	4.207e^-4	0.849	INTRON Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21879916	X_21879916_SNP [dm3] X_22478080_SNP [dm6]	A	G	4.212e^-4	0.849	UPSTREAM CG12576 INTRON CG12576
2R	2442436	2R_2442436_SNP [dm3] 2R_6554931_SNP [dm6]	C	T	4.215e^-4	0.849	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22950693	3R_22950693_SNP [dm3] 3R_27124971_SNP [dm6]	G	A	4.216e^-4	0.849	UTR_3_PRIME CG6051 UPSTREAM CG6059 DOWNSTREAM CG6051
3L	13114792	3L_13114792_INS [dm3] 3L_13121692_INS [dm6]	A	ACAAAATA	4.221e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15123799	3R_15123799_SNP [dm3] 3R_19298077_SNP [dm6]	C	A	4.222e^-4	0.849	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	557219	3L_557219_SNP [dm3] 3L_557219_SNP [dm6]	A	G	4.225e^-4	0.849	INTRON hipk
2L	17723978	2L_17723978_SNP [dm3] 2L_17723978_SNP [dm6]	A	T	4.233e^-4	0.849	INTRON CadN
2L	5055849	2L_5055849_SNP [dm3] 2L_5055849_SNP [dm6]	A	G	4.235e^-4	0.849	UTR_3_PRIME His3.3A UPSTREAM CG14036 DOWNSTREAM CG31918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11360118	3L_11360118_SNP [dm3] 3L_11367018_SNP [dm6]	C	T	4.243e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11681156	2R_11681156_SNP [dm3] 2R_15793651_SNP [dm6]	C	T	4.256e^-4	0.849	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7156618	2R_7156618_SNP [dm3] 2R_11269113_SNP [dm6]	T	A	4.257e^-4	0.849	SPLICE_SITE_REGION Cpr47Ef INTRON Cpr47Ef
3R	14179542	3R_14179542_SNP [dm3] 3R_18353820_SNP [dm6]	T	C	4.269e^-4	0.849	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14062118	2L_14062118_SNP [dm3] 2L_14062118_SNP [dm6]	T	G	4.281e^-4	0.849	INTRON nAChRalpha5
2R	13335028	2R_13335028_SNP [dm3] 2R_17447523_SNP [dm6]	G	A	4.286e^-4	0.849	UPSTREAM mthl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2794058	2R_2794058_SNP [dm3] 2R_6906553_SNP [dm6]	T	A	4.286e^-4	0.849	INTRON CG30158
3R	22947716	3R_22947716_SNP [dm3] 3R_27121994_SNP [dm6]	C	T	4.293e^-4	0.849	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22195377	2L_22195377_INS [dm3] 2L_22195377_INS [dm6]	A	AA	4.298e^-4	0.849	INTRON Ir40a
X	7905008	X_7905008_SNP [dm3] X_8010975_SNP [dm6]	C	T	4.305e^-4	0.849	INTRON Tbh
2R	8869268	2R_8869268_SNP [dm3] 2R_12981763_SNP [dm6]	T	C	4.309e^-4	0.849	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	5141351	2L_5141351_SNP [dm3] 2L_5141351_SNP [dm6]	G	A	4.315e^-4	0.849	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23253480	3R_23253480_SNP [dm3] 3R_27427758_SNP [dm6]	A	G	4.317e^-4	0.849	INTRON side
X	15357177	X_15357177_SNP [dm3] X_15463144_SNP [dm6]	G	A	4.320e^-4	0.849	NON_SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16062298	3L_16062298_SNP [dm3] 3L_16069198_SNP [dm6]	A	G	4.323e^-4	0.849	INTRON Mbs
2R	10803561	2R_10803561_SNP [dm3] 2R_14916056_SNP [dm6]	T	A	4.326e^-4	0.849	INTRON CG10249
2R	7499568	2R_7499568_SNP [dm3] 2R_11612063_SNP [dm6]	G	T	4.330e^-4	0.849	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	4123267	3L_4123267_SNP [dm3] 3L_4123267_SNP [dm6]	T	A	4.331e^-4	0.849	UTR_3_PRIME ens UPSTREAM Chd64 DOWNSTREAM ens	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9150090	3R_9150090_SNP [dm3] 3R_13324368_SNP [dm6]	T	A	4.335e^-4	0.849	INTERGENIC
3R	22279585	3R_22279585_SNP [dm3] 3R_26453863_SNP [dm6]	A	C	4.342e^-4	0.849	UTR_3_PRIME CG5447 UPSTREAM CG43117
3R	22950471	3R_22950471_SNP [dm3] 3R_27124749_SNP [dm6]	G	T	4.342e^-4	0.849	UPSTREAM CG6059 DOWNSTREAM CG6051 INTERGENIC
3R	22947171	3R_22947171_SNP [dm3] 3R_27121449_SNP [dm6]	C	A	4.343e^-4	0.849	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059
X	18643407	X_18643407_SNP [dm3] X_18749374_SNP [dm6]	A	T	4.362e^-4	0.849	INTERGENIC
X	10092607	X_10092607_SNP [dm3] X_10198574_SNP [dm6]	G	T	4.375e^-4	0.849	INTRON CR44894
3R	10878024	3R_10878024_SNP [dm3] 3R_15052302_SNP [dm6]	T	G	4.380e^-4	0.849	INTERGENIC
X	16426471	X_16426471_SNP [dm3] X_16532438_SNP [dm6]	T	C	4.383e^-4	0.849	INTRON para
3R	15003576	3R_15003576_SNP [dm3] 3R_19177854_SNP [dm6]	A	C	4.403e^-4	0.849	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
2R	5065251	2R_5065251_SNP [dm3] 2R_9177746_SNP [dm6]	C	G	4.415e^-4	0.849	UPSTREAM Rme-8 DOWNSTREAM ltd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	15736484	3L_15736484_SNP [dm3] 3L_15743384_SNP [dm6]	A	T	4.416e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17937117	3L_17937117_SNP [dm3] 3L_17944017_SNP [dm6]	A	T	4.423e^-4	0.849	INTRON CG43174
3R	21964331	3R_21964331_INS [dm3] 3R_26138609_INS [dm6]	T	TT	4.430e^-4	0.849	INTERGENIC
2R	6564120	2R_6564120_SNP [dm3] 2R_10676615_SNP [dm6]	C	T	4.438e^-4	0.849	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16059707	3L_16059707_SNP [dm3] 3L_16066607_SNP [dm6]	G	C	4.439e^-4	0.849	SPLICE_SITE_REGION Mbs INTRON Mbs
3L	9321863	3L_9321863_SNP [dm3] 3L_9328763_SNP [dm6]	G	C	4.440e^-4	0.849	INTERGENIC
3R	22934920	3R_22934920_SNP [dm3] 3R_27109198_SNP [dm6]	A	G	4.441e^-4	0.849	NON_SYNONYMOUS_CODING gb UPSTREAM CR45209
3L	10027242	3L_10027242_SNP [dm3] 3L_10034142_SNP [dm6]	T	C	4.446e^-4	0.849	INTRON dpr6
2L	17505440	2L_17505440_SNP [dm3] 2L_17505440_SNP [dm6]	G	A	4.447e^-4	0.849	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22867477	3R_22867477_SNP [dm3] 3R_27041755_SNP [dm6]	C	T	4.447e^-4	0.849	INTRON RYa-R
3R	12419878	3R_12419878_DEL [dm3] 3R_16594156_DEL [dm6]	TT	T	4.448e^-4	0.849	UPSTREAM CG14892 INTERGENIC
2R	12476585	2R_12476585_SNP [dm3] 2R_16589080_SNP [dm6]	G	T	4.452e^-4	0.849	UTR_5_PRIME CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22072683	3R_22072683_SNP [dm3] 3R_26246961_SNP [dm6]	C	A	4.459e^-4	0.849	INTRON CR42745
3R	13363058	3R_13363058_SNP [dm3] 3R_17537336_SNP [dm6]	A	C	4.464e^-4	0.849	DOWNSTREAM P5cr-2 INTRON l_3_07882
3L	17485861	3L_17485861_SNP [dm3] 3L_17492761_SNP [dm6]	C	T	4.465e^-4	0.849	INTRON Oatp74D
X	4473915	X_4473915_SNP [dm3] X_4579882_SNP [dm6]	C	A	4.468e^-4	0.849	INTRON CR32773
3L	15768282	3L_15768282_SNP [dm3] 3L_15775182_SNP [dm6]	T	C	4.476e^-4	0.849	INTERGENIC
2L	7126984	2L_7126984_SNP [dm3] 2L_7126984_SNP [dm6]	T	G	4.479e^-4	0.849	INTRON Pvf3
3R	22075304	3R_22075304_SNP [dm3] 3R_26249582_SNP [dm6]	G	C	4.482e^-4	0.849	INTRON CR42745
3L	16762714	3L_16762714_INS [dm3] 3L_16769614_INS [dm6]	A	AG	4.489e^-4	0.849	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10074652	3L_10074652_SNP [dm3] 3L_10081552_SNP [dm6]	T	C	4.492e^-4	0.849	INTRON dpr6
2R	16871614	2R_16871614_SNP [dm3] 2R_20984109_SNP [dm6]	A	T	4.493e^-4	0.849	UTR_3_PRIME CG15651 DOWNSTREAM CG9313
3R	11715538	3R_11715538_SNP [dm3] 3R_15889816_SNP [dm6]	A	G	4.494e^-4	0.849	SYNONYMOUS_CODING CG14877
3L	18696682	3L_18696682_SNP [dm3] 3L_18703582_SNP [dm6]	G	T	4.496e^-4	0.849	INTERGENIC
3L	6953517	3L_6953517_SNP [dm3] 3L_6960417_SNP [dm6]	G	A	4.497e^-4	0.849	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo
3L	8752031	3L_8752031_DEL [dm3] 3L_8758931_DEL [dm6]	AA	A	4.508e^-4	0.849	INTRON Fhos
2R	18031975	2R_18031975_SNP [dm3] 2R_22144470_SNP [dm6]	G	A	4.522e^-4	0.849	INTRON a
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	4.527e^-4	0.849	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
3R	19736342	3R_19736342_SNP [dm3] 3R_23910620_SNP [dm6]	T	C	4.528e^-4	0.849	INTRON sba
3R	13467438	3R_13467438_SNP [dm3] 3R_17641716_SNP [dm6]	T	C	4.532e^-4	0.849	INTRON CG43175
2L	17892904	2L_17892904_SNP [dm3] 2L_17892904_SNP [dm6]	G	A	4.537e^-4	0.849	UPSTREAM CR43420 INTERGENIC
X	8163805	X_8163805_SNP [dm3] X_8269772_SNP [dm6]	T	C	4.541e^-4	0.849	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	22211298	3R_22211298_SNP [dm3] 3R_26385576_SNP [dm6]	T	C	4.543e^-4	0.849	INTERGENIC
X	5226612	X_5226612_SNP [dm3] X_5332579_SNP [dm6]	A	G	4.546e^-4	0.849	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14979855	3R_14979855_SNP [dm3] 3R_19154133_SNP [dm6]	T	C	4.550e^-4	0.849	UTR_3_PRIME CG11779 UPSTREAM CG5835 DOWNSTREAM CG11779
3R	24122028	3R_24122028_SNP [dm3] 3R_28296306_SNP [dm6]	C	G	4.558e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15772899	3L_15772899_SNP [dm3] 3L_15779799_SNP [dm6]	C	T	4.559e^-4	0.849	INTERGENIC
2R	12999948	2R_12999948_SNP [dm3] 2R_17112443_SNP [dm6]	T	G	4.568e^-4	0.849	INTRON CG15611
3L	15667875	3L_15667875_INS [dm3] 3L_15674775_INS [dm6]	T	TGGGGGTGAGT...	4.574e^-4	0.849	INTERGENIC	silencer mE1_HDAC_PRE
3L	5681090	3L_5681090_SNP [dm3] 3L_5687990_SNP [dm6]	T	C	4.584e^-4	0.849	INTRON sif
X	7086317	X_7086317_SNP [dm3] X_7192284_SNP [dm6]	C	A	4.587e^-4	0.849	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
2L	12281930	2L_12281930_SNP [dm3] 2L_12281930_SNP [dm6]	T	C	4.588e^-4	0.849	INTRON aret

By genomic position
Variant impact
Gene name

mn_Weight_LowDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results