DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.433e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1927 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	4692539	3L_4692539_SNP [dm3] 3L_4692539_SNP [dm6]	T	C	1.152e^-6	0.921	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4692512	3L_4692512_SNP [dm3] 3L_4692512_SNP [dm6]	T	C	1.522e^-6	0.921	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18117607	3L_18117607_SNP [dm3] 3L_18124507_SNP [dm6]	G	A	1.674e^-6	0.921	INTERGENIC
3L	4692547	3L_4692547_INS [dm3] 3L_4692547_INS [dm6]	G	GC	3.513e^-6	0.921	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13418710	3R_13418710_SNP [dm3] 3R_17592988_SNP [dm6]	C	T	3.638e^-6	0.921	INTERGENIC
3L	1139881	3L_1139881_SNP [dm3] 3L_1139881_SNP [dm6]	G	C	4.041e^-6	0.921	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10652408	3R_10652408_SNP [dm3] 3R_14826686_SNP [dm6]	C	T	4.386e^-6	0.921	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1139878	3L_1139878_SNP [dm3] 3L_1139878_SNP [dm6]	T	G	5.261e^-6	0.921	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11217493	3R_11217493_SNP [dm3] 3R_15391771_SNP [dm6]	C	T	5.281e^-6	0.921	INTRON Rbp	TF binding site mE1_TFBS_cad
X	16220389	X_16220389_SNP [dm3] X_16326356_SNP [dm6]	A	G	5.924e^-6	0.921	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17086505	3R_17086505_SNP [dm3] 3R_21260783_SNP [dm6]	C	T	6.097e^-6	0.921	INTRON ETHR
2L	316928	2L_316928_SNP [dm3] 2L_316928_SNP [dm6]	G	T	7.753e^-6	0.921	INTRON Plc21C
3R	17683579	3R_17683579_SNP [dm3] 3R_21857857_SNP [dm6]	A	G	8.753e^-6	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	20995071	3L_20995071_DEL [dm3] 3L_21001971_DEL [dm6]	GACTTGGGG	G	8.938e^-6	0.921	INTRON skd	TF binding site mE1_TFBS_cad
X	5877626	X_5877626_SNP [dm3] X_5983593_SNP [dm6]	C	T	9.572e^-6	0.921	INTRON Grip
3L	2866986	3L_2866986_SNP [dm3] 3L_2866986_SNP [dm6]	C	T	1.000e^-5	0.921	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7043637	2R_7043637_SNP [dm3] 2R_11156132_SNP [dm6]	C	T	1.001e^-5	0.921	DOWNSTREAM CG13230 INTRON CG13229	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	17209052	2R_17209052_SNP [dm3] 2R_21321547_SNP [dm6]	A	G	1.015e^-5	0.921	SYNONYMOUS_CODING CG30394
3L	3834874	3L_3834874_SNP [dm3] 3L_3834874_SNP [dm6]	A	T	1.059e^-5	0.921	INTRON enc
2R	14092184	2R_14092184_SNP [dm3] 2R_18204679_SNP [dm6]	A	C	1.117e^-5	0.921	INTERGENIC
2R	15588170	2R_15588170_SNP [dm3] 2R_19700665_SNP [dm6]	G	T	1.169e^-5	0.921	SYNONYMOUS_CODING Obp56c	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	23993445	3L_23993445_SNP [dm3] 3L_24000345_SNP [dm6]	T	C	1.171e^-5	0.921	INTERGENIC
3L	6678422	3L_6678422_SNP [dm3] 3L_6685322_SNP [dm6]	G	A	1.195e^-5	0.921	INTERGENIC
3R	23522340	3R_23522340_SNP [dm3] 3R_27696618_SNP [dm6]	C	T	1.275e^-5	0.921	UTR_3_PRIME ALiX DOWNSTREAM CG43320
3L	3834899	3L_3834899_SNP [dm3] 3L_3834899_SNP [dm6]	C	A	1.276e^-5	0.921	INTRON enc
2L	13768026	2L_13768026_SNP [dm3] 2L_13768026_SNP [dm6]	G	T	1.300e^-5	0.921	INTRON TM9SF4
2L	7127119	2L_7127119_SNP [dm3] 2L_7127119_SNP [dm6]	G	T	1.327e^-5	0.921	INTRON Pvf3
3R	17785992	3R_17785992_SNP [dm3] 3R_21960270_SNP [dm6]	A	T	1.392e^-5	0.926	INTRON Eip93F
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.442e^-5	0.926	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	8196704	3L_8196704_DEL [dm3] 3L_8203604_DEL [dm6]	GTCATCGGGACGACG...	G	1.526e^-5	0.926	DOWNSTREAM CG13679 INTERGENIC
2R	7043680	2R_7043680_SNP [dm3] 2R_11156175_SNP [dm6]	T	C	1.531e^-5	0.926	DOWNSTREAM CG13230 INTRON CG13229	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	9551925	2R_9551925_SNP [dm3] 2R_13664420_SNP [dm6]	T	G	1.734e^-5	0.931	UPSTREAM CG6209 & 1 other INTRON fas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12980352	3R_12980352_SNP [dm3] 3R_17154630_SNP [dm6]	G	A	1.781e^-5	0.931	NON_SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15889492	2R_15889492_SNP [dm3] 2R_20001987_SNP [dm6]	A	T	1.819e^-5	0.931	INTERGENIC
2R	15064063	2R_15064063_SNP [dm3] 2R_19176558_SNP [dm6]	A	T	1.962e^-5	0.931	INTRON CG10737
2L	9028967	2L_9028967_SNP [dm3] 2L_9028967_SNP [dm6]	A	G	1.979e^-5	0.931	INTRON CG9582 & 1 other
3R	13180985	3R_13180985_DEL [dm3] 3R_17355263_DEL [dm6]	TTGT	T	2.164e^-5	0.931	INTRON beat-IIa	TF binding site mE1_TFBS_inv
X	16220521	X_16220521_SNP [dm3] X_16326488_SNP [dm6]	C	T	2.211e^-5	0.931	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	803903	2L_803903_SNP [dm3] 2L_803903_SNP [dm6]	G	A	2.295e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13768040	2L_13768040_SNP [dm3] 2L_13768040_SNP [dm6]	T	A	2.363e^-5	0.931	INTRON TM9SF4
2R	17526011	2R_17526011_SNP [dm3] 2R_21638506_SNP [dm6]	A	G	2.391e^-5	0.931	DOWNSTREAM CG10321 INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	2.405e^-5	0.931	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8752031	3L_8752031_DEL [dm3] 3L_8758931_DEL [dm6]	AA	A	2.460e^-5	0.931	INTRON Fhos
X	3904226	X_3904226_SNP [dm3] X_4010193_SNP [dm6]	T	G	2.505e^-5	0.931	INTERGENIC
2R	15268200	2R_15268200_SNP [dm3] 2R_19380695_SNP [dm6]	C	A	2.527e^-5	0.931	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
3R	13415548	3R_13415548_SNP [dm3] 3R_17589826_SNP [dm6]	G	A	2.545e^-5	0.931	INTERGENIC
3R	19532893	3R_19532893_SNP [dm3] 3R_23707171_SNP [dm6]	A	G	2.834e^-5	0.931	UPSTREAM CR44052 INTRON CG31414
2L	13768024	2L_13768024_SNP [dm3] 2L_13768024_SNP [dm6]	C	G	2.850e^-5	0.931	INTRON TM9SF4
3R	13187998	3R_13187998_SNP [dm3] 3R_17362276_SNP [dm6]	A	C	2.859e^-5	0.931	INTRON beat-IIa
X	10186300	X_10186300_SNP [dm3] X_10292267_SNP [dm6]	G	T	2.864e^-5	0.931	INTRON alpha-Man-I	TF binding site mE1_TFBS_inv
2L	316991	2L_316991_SNP [dm3] 2L_316991_SNP [dm6]	T	A	2.874e^-5	0.931	INTRON Plc21C
2R	17208956	2R_17208956_SNP [dm3] 2R_21321451_SNP [dm6]	C	T	2.875e^-5	0.931	SYNONYMOUS_CODING CG30394
3R	11210531	3R_11210531_SNP [dm3] 3R_15384809_SNP [dm6]	G	C	2.884e^-5	0.931	INTRON Rbp
2R	15064051	2R_15064051_SNP [dm3] 2R_19176546_SNP [dm6]	T	G	2.996e^-5	0.931	INTRON CG10737
3R	20848802	3R_20848802_SNP [dm3] 3R_25023080_SNP [dm6]	T	A	3.003e^-5	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2R	9965586	2R_9965586_SNP [dm3] 2R_14078081_SNP [dm6]	T	C	3.014e^-5	0.931	INTRON Prosap
3L	18115777	3L_18115777_SNP [dm3] 3L_18122677_SNP [dm6]	A	T	3.031e^-5	0.931	UPSTREAM CG42853 INTERGENIC
3L	16738356	3L_16738356_SNP [dm3] 3L_16745256_SNP [dm6]	G	A	3.033e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	5284038	3L_5284038_INS [dm3] 3L_5290938_INS [dm6]	A	AGCCAGAAAAGAAGATTTTC...	3.108e^-5	0.931	INTERGENIC
X	5064259	X_5064259_SNP [dm3] X_5170226_SNP [dm6]	T	A	3.220e^-5	0.931	INTRON rg & 1 other
2R	16313474	2R_16313474_SNP [dm3] 2R_20425969_SNP [dm6]	G	T	3.232e^-5	0.931	INTRON CG12484
2R	18336298	2R_18336298_SNP [dm3] 2R_22448793_SNP [dm6]	G	A	3.372e^-5	0.931	INTERGENIC
2R	18598788	2R_18598788_SNP [dm3] 2R_22711283_SNP [dm6]	G	C	3.513e^-5	0.931	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3L	1921363	3L_1921363_SNP [dm3] 3L_1921363_SNP [dm6]	T	G	3.583e^-5	0.931	UTR_5_PRIME Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	18116153	3L_18116153_SNP [dm3] 3L_18123053_SNP [dm6]	G	A	3.646e^-5	0.931	INTERGENIC
3R	1611375	3R_1611375_SNP [dm3] 3R_5785653_SNP [dm6]	T	C	3.735e^-5	0.931	SYNONYMOUS_CODING kat-60L1	TF binding site mE1_TFBS_chinmo
3L	3834872	3L_3834872_SNP [dm3] 3L_3834872_SNP [dm6]	T	G	3.844e^-5	0.931	INTRON enc
3R	10576324	3R_10576324_SNP [dm3] 3R_14750602_SNP [dm6]	C	T	3.880e^-5	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	16714297	2L_16714297_SNP [dm3] 2L_16714297_SNP [dm6]	T	A	3.924e^-5	0.931	INTRON CG31808
3R	18470693	3R_18470693_SNP [dm3] 3R_22644971_SNP [dm6]	G	A	4.019e^-5	0.931	INTRON CG45058
3R	10576766	3R_10576766_SNP [dm3] 3R_14751044_SNP [dm6]	C	T	4.054e^-5	0.931	DOWNSTREAM CG7362 INTRON jvl & 1 other
3L	10925882	3L_10925882_SNP [dm3] 3L_10932782_SNP [dm6]	C	T	4.054e^-5	0.931	INTERGENIC
3R	11465272	3R_11465272_SNP [dm3] 3R_15639550_SNP [dm6]	C	T	4.056e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13413829	2L_13413829_SNP [dm3] 2L_13413829_SNP [dm6]	A	G	4.080e^-5	0.931	UTR_3_PRIME CG16956 DOWNSTREAM CG16848
2R	16563536	2R_16563536_SNP [dm3] 2R_20676031_SNP [dm6]	G	A	4.084e^-5	0.931	INTERGENIC
3L	21216701	3L_21216701_SNP [dm3] 3L_21223601_SNP [dm6]	C	A	4.212e^-5	0.931	DOWNSTREAM CG43219 INTERGENIC
X	5673877	X_5673877_SNP [dm3] X_5779844_SNP [dm6]	G	A	4.380e^-5	0.931	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
2R	18717698	2R_18717698_SNP [dm3] 2R_22830175_SNP [dm6]	C	T	4.406e^-5	0.931	SYNONYMOUS_CODING CG30272
3L	1139879	3L_1139879_SNP [dm3] 3L_1139879_SNP [dm6]	C	G	4.497e^-5	0.931	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12464260	2R_12464260_SNP [dm3] 2R_16576755_SNP [dm6]	A	T	4.525e^-5	0.931	UPSTREAM CG8317 INTERGENIC
3L	1139200	3L_1139200_SNP [dm3] 3L_1139200_SNP [dm6]	C	T	4.565e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3927541	3L_3927541_SNP [dm3] 3L_3927541_SNP [dm6]	T	A	4.569e^-5	0.931	INTRON Eip63F-1
3L	18116289	3L_18116289_SNP [dm3] 3L_18123189_SNP [dm6]	A	T	4.683e^-5	0.931	INTERGENIC
X	15818762	X_15818762_SNP [dm3] X_15924729_SNP [dm6]	A	G	4.771e^-5	0.931	UPSTREAM Lcch3 DOWNSTREAM CG8916 INTERGENIC
2R	14645198	2R_14645198_SNP [dm3] 2R_18757693_SNP [dm6]	T	C	4.835e^-5	0.931	SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2R	14645244	2R_14645244_SNP [dm3] 2R_18757739_SNP [dm6]	G	A	4.835e^-5	0.931	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2L	5994222	2L_5994222_SNP [dm3] 2L_5994222_SNP [dm6]	G	T	4.852e^-5	0.931	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5877627	X_5877627_SNP [dm3] X_5983594_SNP [dm6]	G	A	4.865e^-5	0.931	INTRON Grip
3L	4692562	3L_4692562_SNP [dm3] 3L_4692562_SNP [dm6]	T	G	4.948e^-5	0.931	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13413672	2L_13413672_SNP [dm3] 2L_13413672_SNP [dm6]	T	G	5.043e^-5	0.931	UTR_3_PRIME CG16848 DOWNSTREAM CG16956
3R	10517603	3R_10517603_SNP [dm3] 3R_14691881_SNP [dm6]	C	T	5.257e^-5	0.931	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	10576767	3R_10576767_SNP [dm3] 3R_14751045_SNP [dm6]	C	T	5.321e^-5	0.931	DOWNSTREAM CG7362 INTRON jvl & 1 other
2L	13992088	2L_13992088_SNP [dm3] 2L_13992088_SNP [dm6]	G	A	5.347e^-5	0.931	INTRON rk
3R	27227237	3R_27227237_SNP [dm3] 3R_31401515_SNP [dm6]	T	G	5.437e^-5	0.931	UTR_3_PRIME Gcn2 DOWNSTREAM CG11337
3R	13415765	3R_13415765_SNP [dm3] 3R_17590043_SNP [dm6]	T	C	5.449e^-5	0.931	INTERGENIC
2L	13915865	2L_13915865_SNP [dm3] 2L_13915865_SNP [dm6]	A	G	5.674e^-5	0.931	NON_SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
3R	18664977	3R_18664977_SNP [dm3] 3R_22839255_SNP [dm6]	T	C	5.676e^-5	0.931	INTERGENIC
3R	7096706	3R_7096706_SNP [dm3] 3R_11270984_SNP [dm6]	G	A	5.693e^-5	0.931	EXON CR31386
3R	7096741	3R_7096741_SNP [dm3] 3R_11271019_SNP [dm6]	C	G	5.693e^-5	0.931	EXON CR31386
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	5.695e^-5	0.931	INTRON kibra
X	20943354	X_20943354_SNP [dm3] X_21072327_SNP [dm6]	C	T	5.696e^-5	0.931	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18435193	3R_18435193_SNP [dm3] 3R_22609471_SNP [dm6]	C	T	5.747e^-5	0.931	NON_SYNONYMOUS_CODING CG31156 UPSTREAM CG13843 DOWNSTREAM Efa6	TF binding site mE1_TFBS_inv
3R	19224102	3R_19224102_SNP [dm3] 3R_23398380_SNP [dm6]	G	A	5.788e^-5	0.931	DOWNSTREAM CR44323 INTERGENIC
3L	4167295	3L_4167295_SNP [dm3] 3L_4167295_SNP [dm6]	C	T	5.799e^-5	0.931	DOWNSTREAM CR44529 INTRON mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	13181560	3R_13181560_SNP [dm3] 3R_17355838_SNP [dm6]	A	T	5.902e^-5	0.931	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2L	2859534	2L_2859534_SNP [dm3] 2L_2859534_SNP [dm6]	A	T	5.965e^-5	0.931	INTRON CG2991
3L	12240354	3L_12240354_SNP [dm3] 3L_12247254_SNP [dm6]	A	G	6.016e^-5	0.931	INTRON app
2L	8243582	2L_8243582_SNP [dm3] 2L_8243582_SNP [dm6]	A	C	6.051e^-5	0.931	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
3L	4166735	3L_4166735_SNP [dm3] 3L_4166735_SNP [dm6]	G	C	6.091e^-5	0.931	INTRON mas	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	9934199	2R_9934199_SNP [dm3] 2R_14046694_SNP [dm6]	G	T	6.183e^-5	0.931	INTRON mam
2L	17015579	2L_17015579_SNP [dm3] 2L_17015579_SNP [dm6]	A	C	6.269e^-5	0.931	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
X	5673884	X_5673884_SNP [dm3] X_5779851_SNP [dm6]	C	G	6.328e^-5	0.931	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
2R	7056322	2R_7056322_SNP [dm3] 2R_11168817_SNP [dm6]	A	G	6.412e^-5	0.931	INTRON shn & 1 other
3L	14951276	3L_14951276_SNP [dm3] 3L_14958176_SNP [dm6]	T	A	6.448e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	3834937	3L_3834937_SNP [dm3] 3L_3834937_SNP [dm6]	T	C	6.460e^-5	0.931	INTRON enc
2R	9972907	2R_9972907_SNP [dm3] 2R_14085402_SNP [dm6]	G	A	6.541e^-5	0.931	INTRON Prosap
2R	15343035	2R_15343035_SNP [dm3] 2R_19455530_SNP [dm6]	G	A	6.664e^-5	0.931	UPSTREAM par-1 & 1 other DOWNSTREAM CG7744 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14454533	X_14454533_SNP [dm3] X_14560500_SNP [dm6]	C	G	6.672e^-5	0.931	INTERGENIC
3R	13525892	3R_13525892_SNP [dm3] 3R_17700170_SNP [dm6]	C	T	6.753e^-5	0.931	INTRON osa	TF binding site BDTNP1_TFBS_dl
X	2670559	X_2670559_SNP [dm3] X_2776526_SNP [dm6]	C	T	6.760e^-5	0.931	INTRON kirre
2R	7015774	2R_7015774_DEL [dm3] 2R_11128269_DEL [dm6]	CCTTTGGC	C	6.789e^-5	0.931	INTERGENIC
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	6.866e^-5	0.931	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16563527	2R_16563527_SNP [dm3] 2R_20676022_SNP [dm6]	T	A	6.882e^-5	0.931	INTERGENIC
3L	10818751	3L_10818751_SNP [dm3] 3L_10825651_SNP [dm6]	G	T	6.937e^-5	0.931	DOWNSTREAM CR45246 INTERGENIC
2L	9028931	2L_9028931_SNP [dm3] 2L_9028931_SNP [dm6]	T	C	7.021e^-5	0.931	INTRON CG9582 & 1 other
2L	7755051	2L_7755051_SNP [dm3] 2L_7755051_SNP [dm6]	A	T	7.095e^-5	0.931	INTRON CG7196
X	15058552	X_15058552_SNP [dm3] X_15164519_SNP [dm6]	C	T	7.216e^-5	0.931	INTERGENIC
3R	17683671	3R_17683671_SNP [dm3] 3R_21857949_SNP [dm6]	T	C	7.257e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19881715	2R_19881715_SNP [dm3] 2R_23994192_SNP [dm6]	G	A	7.281e^-5	0.931	INTRON CG3860
X	15818793	X_15818793_SNP [dm3] X_15924760_SNP [dm6]	G	A	7.283e^-5	0.931	UPSTREAM Lcch3 DOWNSTREAM CG8916 INTERGENIC
2R	7834197	2R_7834197_SNP [dm3] 2R_11946692_SNP [dm6]	T	C	7.313e^-5	0.931	INTRON CG13188
X	14454530	X_14454530_SNP [dm3] X_14560497_SNP [dm6]	T	C	7.320e^-5	0.931	INTERGENIC
3L	673723	3L_673723_SNP [dm3] 3L_673723_SNP [dm6]	A	G	7.504e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	810336	3L_810336_SNP [dm3] 3L_810336_SNP [dm6]	G	T	7.540e^-5	0.931	INTERGENIC
2R	7444493	2R_7444493_SNP [dm3] 2R_11556988_SNP [dm6]	C	G	7.542e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5592377	X_5592377_SNP [dm3] X_5698344_SNP [dm6]	A	G	7.606e^-5	0.931	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15372458	3R_15372458_SNP [dm3] 3R_19546736_SNP [dm6]	A	T	7.730e^-5	0.931	INTRON Dys
X	8163844	X_8163844_SNP [dm3] X_8269811_SNP [dm6]	C	G	7.779e^-5	0.931	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	12978516	3R_12978516_SNP [dm3] 3R_17152794_SNP [dm6]	C	A	7.911e^-5	0.931	UTR_3_PRIME CG5292 DOWNSTREAM Mur89F
2R	15321160	2R_15321160_SNP [dm3] 2R_19433655_SNP [dm6]	A	G	7.920e^-5	0.931	INTRON Fak	TF binding site mE1_TFBS_inv
3R	17965732	3R_17965732_SNP [dm3] 3R_22140010_SNP [dm6]	C	A	7.972e^-5	0.931	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5215112	3R_5215112_SNP [dm3] 3R_9389390_SNP [dm6]	G	T	8.130e^-5	0.931	INTRON FER
2L	16436820	2L_16436820_SNP [dm3] 2L_16436820_SNP [dm6]	G	C	8.182e^-5	0.931	INTRON CG5888
3L	13116080	3L_13116080_SNP [dm3] 3L_13122980_SNP [dm6]	A	T	8.236e^-5	0.931	INTERGENIC
X	15810773	X_15810773_SNP [dm3] X_15916740_SNP [dm6]	A	G	8.281e^-5	0.931	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
3L	14233069	3L_14233069_SNP [dm3] 3L_14239969_SNP [dm6]	A	G	8.425e^-5	0.931	UPSTREAM CR45399 INTERGENIC
3R	18620889	3R_18620889_SNP [dm3] 3R_22795167_SNP [dm6]	C	A	8.460e^-5	0.931	INTERGENIC
2L	22608971	2L_22608971_SNP [dm3] 2L_22716239_SNP [dm6]	G	T	8.509e^-5	0.931	INTRON CG40006
X	15057431	X_15057431_SNP [dm3] X_15163398_SNP [dm6]	T	C	8.523e^-5	0.931	UPSTREAM CG9095 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3871948	2L_3871948_SNP [dm3] 2L_3871948_SNP [dm6]	T	C	8.533e^-5	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12021551	2L_12021551_DEL [dm3] 2L_12021551_DEL [dm6]	ATT	A	8.547e^-5	0.931	UPSTREAM CG6734 INTERGENIC
2L	5239391	2L_5239391_SNP [dm3] 2L_5239391_SNP [dm6]	A	T	8.627e^-5	0.931	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	15565541	2R_15565541_DEL [dm3] 2R_19678036_DEL [dm6]	CGAC	C	8.698e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18591924	2R_18591924_SNP [dm3] 2R_22704419_SNP [dm6]	C	T	8.699e^-5	0.931	UTR_5_PRIME CG30259 UPSTREAM Obp58b DOWNSTREAM Obp59a
3L	4167270	3L_4167270_SNP [dm3] 3L_4167270_SNP [dm6]	A	G	8.703e^-5	0.931	DOWNSTREAM CR44529 INTRON mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7227674	2R_7227674_SNP [dm3] 2R_11340169_SNP [dm6]	T	G	8.719e^-5	0.931	UPSTREAM zetaTry DOWNSTREAM etaTry INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4172716	3L_4172716_SNP [dm3] 3L_4172716_SNP [dm6]	A	G	8.741e^-5	0.931	SYNONYMOUS_CODING Ero1L
3R	22235978	3R_22235978_SNP [dm3] 3R_26410256_SNP [dm6]	C	T	8.813e^-5	0.931	INTERGENIC
2R	9934198	2R_9934198_SNP [dm3] 2R_14046693_SNP [dm6]	T	G	8.912e^-5	0.931	INTRON mam
2R	17950659	2R_17950659_SNP [dm3] 2R_22063154_SNP [dm6]	C	A	8.913e^-5	0.931	INTRON Snp
3R	18620899	3R_18620899_SNP [dm3] 3R_22795177_SNP [dm6]	T	A	9.113e^-5	0.931	INTERGENIC
3R	20848791	3R_20848791_INS [dm3] 3R_25023069_INS [dm6]	T	TC	9.146e^-5	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
X	16289127	X_16289127_SNP [dm3] X_16395094_SNP [dm6]	T	G	9.197e^-5	0.931	SYNONYMOUS_CODING mei-41
2R	7428309	2R_7428309_SNP [dm3] 2R_11540804_SNP [dm6]	C	T	9.412e^-5	0.931	INTERGENIC
3L	17403244	3L_17403244_SNP [dm3] 3L_17410144_SNP [dm6]	A	T	9.521e^-5	0.931	INTRON blot
3R	20848783	3R_20848783_SNP [dm3] 3R_25023061_SNP [dm6]	A	T	9.565e^-5	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2R	18911751	2R_18911751_SNP [dm3] 2R_23024228_SNP [dm6]	T	A	9.584e^-5	0.931	INTRON twi & 1 other
3R	19815257	3R_19815257_SNP [dm3] 3R_23989535_SNP [dm6]	T	C	9.654e^-5	0.931	SYNONYMOUS_CODING CG13604 DOWNSTREAM CG5902
3R	10658898	3R_10658898_SNP [dm3] 3R_14833176_SNP [dm6]	C	T	9.682e^-5	0.931	INTRON btsz
3R	15176629	3R_15176629_SNP [dm3] 3R_19350907_SNP [dm6]	C	T	9.721e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7043676	2R_7043676_SNP [dm3] 2R_11156171_SNP [dm6]	T	C	9.763e^-5	0.931	DOWNSTREAM CG13230 INTRON CG13229	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	5297312	2R_5297312_SNP [dm3] 2R_9409807_SNP [dm6]	T	C	9.772e^-5	0.931	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14951280	3L_14951280_SNP [dm3] 3L_14958180_SNP [dm6]	C	T	9.774e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	18203589	2R_18203589_SNP [dm3] 2R_22316084_SNP [dm6]	A	T	9.981e^-5	0.931	INTRON CR44758
2L	1128114	2L_1128114_DEL [dm3] 2L_1128114_DEL [dm6]	CTATGGCGC	C	9.996e^-5	0.931	SPLICE_SITE_REGION Pino INTRON Pino	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5877665	X_5877665_SNP [dm3] X_5983632_SNP [dm6]	C	A	1.000e^-4	0.931	INTRON Grip
X	11005611	X_11005611_SNP [dm3] X_11111578_SNP [dm6]	A	C	1.016e^-4	0.931	NON_SYNONYMOUS_CODING Hsp60 DOWNSTREAM CG11122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21219314	3L_21219314_SNP [dm3] 3L_21226214_SNP [dm6]	G	A	1.021e^-4	0.931	UPSTREAM Eip78C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11645293	3L_11645293_SNP [dm3] 3L_11652193_SNP [dm6]	C	A	1.024e^-4	0.931	INTRON CG32085
3L	7230907	3L_7230907_SNP [dm3] 3L_7237807_SNP [dm6]	C	A	1.027e^-4	0.931	NON_SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21788045	2L_21788045_SNP [dm3] 2L_21788045_SNP [dm6]	C	A	1.027e^-4	0.931	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	9941320	2R_9941320_SNP [dm3] 2R_14053815_SNP [dm6]	A	G	1.027e^-4	0.931	INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22319227	2L_22319227_SNP [dm3] 2L_22319227_SNP [dm6]	G	A	1.034e^-4	0.931	INTRON CG17018
3R	9134505	3R_9134505_SNP [dm3] 3R_13308783_SNP [dm6]	G	T	1.036e^-4	0.931	NON_SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
X	3053094	X_3053094_SNP [dm3] X_3159061_SNP [dm6]	G	A	1.037e^-4	0.931	INTRON N
3R	27236716	3R_27236716_SNP [dm3] 3R_31410994_SNP [dm6]	G	T	1.038e^-4	0.931	INTRON Gprk2
3R	19727883	3R_19727883_SNP [dm3] 3R_23902161_SNP [dm6]	T	A	1.038e^-4	0.931	INTRON sba
3R	26558047	3R_26558047_SNP [dm3] 3R_30732325_SNP [dm6]	G	A	1.038e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1040873	2L_1040873_SNP [dm3] 2L_1040873_SNP [dm6]	A	C	1.043e^-4	0.931	INTRON IA-2
3R	13636459	3R_13636459_SNP [dm3] 3R_17810737_SNP [dm6]	G	A	1.044e^-4	0.931	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012 UPSTREAM tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4448621	2L_4448621_SNP [dm3] 2L_4448621_SNP [dm6]	A	T	1.046e^-4	0.931	UTR_5_PRIME MFS18 DOWNSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	21813493	2L_21813493_SNP [dm3] 2L_21813493_SNP [dm6]	C	A	1.047e^-4	0.931	INTERGENIC
2R	15588044	2R_15588044_SNP [dm3] 2R_19700539_SNP [dm6]	T	G	1.050e^-4	0.931	SYNONYMOUS_CODING Obp56c	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9251363	3L_9251363_SNP [dm3] 3L_9258263_SNP [dm6]	T	A	1.059e^-4	0.931	INTRON GluRIB
2L	7749132	2L_7749132_SNP [dm3] 2L_7749132_SNP [dm6]	T	A	1.059e^-4	0.931	INTERGENIC
2L	2328995	2L_2328995_SNP [dm3] 2L_2328995_SNP [dm6]	G	A	1.061e^-4	0.931	INTRON CG9967 & 1 other
3L	8080844	3L_8080844_SNP [dm3] 3L_8087744_SNP [dm6]	C	T	1.064e^-4	0.931	UTR_3_PRIME CG7565 INTRON Ect4
3R	23766383	3R_23766383_SNP [dm3] 3R_27940661_SNP [dm6]	C	G	1.066e^-4	0.931	NON_SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	673662	3L_673662_SNP [dm3] 3L_673662_SNP [dm6]	A	G	1.066e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	673697	3L_673697_DEL [dm3] 3L_673697_DEL [dm6]	AACGAAA	A	1.066e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	673707	3L_673707_INS [dm3] 3L_673707_INS [dm6]	A	AAGGA	1.066e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	673855	3L_673855_SNP [dm3] 3L_673855_SNP [dm6]	T	C	1.067e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	673859	3L_673859_SNP [dm3] 3L_673859_SNP [dm6]	A	T	1.067e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	23853026	3R_23853026_SNP [dm3] 3R_28027304_SNP [dm6]	C	T	1.071e^-4	0.931	INTRON CG34362
3R	13026932	3R_13026932_SNP [dm3] 3R_17201210_SNP [dm6]	A	C	1.074e^-4	0.931	INTRON Mur89F
2L	3547607	2L_3547607_SNP [dm3] 2L_3547607_SNP [dm6]	A	G	1.074e^-4	0.931	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5282780	3L_5282780_SNP [dm3] 3L_5289680_SNP [dm6]	T	A	1.075e^-4	0.931	INTERGENIC
3R	23326896	3R_23326896_SNP [dm3] 3R_27501174_SNP [dm6]	C	T	1.081e^-4	0.931	DOWNSTREAM CG43139 & 1 other INTERGENIC
3L	15130032	3L_15130032_SNP [dm3] 3L_15136932_SNP [dm6]	T	G	1.110e^-4	0.931	UTR_5_PRIME CG12316 UPSTREAM CG12316 DOWNSTREAM Pdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	4167929	3L_4167929_SNP [dm3] 3L_4167929_SNP [dm6]	C	A	1.119e^-4	0.931	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19364625	2R_19364625_SNP [dm3] 2R_23477102_SNP [dm6]	C	G	1.119e^-4	0.931	UPSTREAM CG13557 DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
3L	904355	3L_904355_SNP [dm3] 3L_904355_SNP [dm6]	T	C	1.126e^-4	0.931	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	16216615	X_16216615_SNP [dm3] X_16322582_SNP [dm6]	A	G	1.140e^-4	0.931	SYNONYMOUS_CODING CG9917 UPSTREAM CG32579	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19728100	3R_19728100_SNP [dm3] 3R_23902378_SNP [dm6]	A	G	1.144e^-4	0.931	INTRON sba
3R	13026887	3R_13026887_SNP [dm3] 3R_17201165_SNP [dm6]	C	T	1.145e^-4	0.931	INTRON Mur89F
3L	4166370	3L_4166370_SNP [dm3] 3L_4166370_SNP [dm6]	C	T	1.149e^-4	0.931	INTRON mas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	4166377	3L_4166377_SNP [dm3] 3L_4166377_SNP [dm6]	T	C	1.149e^-4	0.931	INTRON mas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	19322763	3R_19322763_SNP [dm3] 3R_23497041_SNP [dm6]	T	A	1.154e^-4	0.931	INTERGENIC
3R	13575759	3R_13575759_SNP [dm3] 3R_17750037_SNP [dm6]	T	G	1.161e^-4	0.931	DOWNSTREAM TyrR INTERGENIC
2R	10856609	2R_10856609_SNP [dm3] 2R_14969104_SNP [dm6]	C	T	1.166e^-4	0.931	INTRON ckn	TF binding site BDTNP1_TFBS_dl
3R	10576273	3R_10576273_SNP [dm3] 3R_14750551_SNP [dm6]	G	A	1.167e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
X	6409814	X_6409814_DEL [dm3] X_6515781_DEL [dm6]	AGAAACTTAATTC...	A	1.177e^-4	0.931	INTRON CG42340
2L	18622786	2L_18622786_SNP [dm3] 2L_18622786_SNP [dm6]	T	G	1.180e^-4	0.931	INTRON MESR3
X	14730695	X_14730695_SNP [dm3] X_14836662_SNP [dm6]	T	A	1.191e^-4	0.931	UPSTREAM CG14410 DOWNSTREAM CG14411 & 1 other INTERGENIC
3R	20630835	3R_20630835_SNP [dm3] 3R_24805113_SNP [dm6]	C	T	1.192e^-4	0.931	SYNONYMOUS_CODING polybromo DOWNSTREAM CG5807	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	1.208e^-4	0.931	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7637507	2L_7637507_SNP [dm3] 2L_7637507_SNP [dm6]	C	T	1.208e^-4	0.931	DOWNSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19036615	2R_19036615_SNP [dm3] 2R_23149092_SNP [dm6]	A	G	1.220e^-4	0.931	INTERGENIC
X	9909583	X_9909583_SNP [dm3] X_10015550_SNP [dm6]	T	C	1.222e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	13204206	3R_13204206_SNP [dm3] 3R_17378484_SNP [dm6]	G	A	1.224e^-4	0.931	INTRON Brf
3R	18620835	3R_18620835_SNP [dm3] 3R_22795113_SNP [dm6]	A	T	1.230e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	673820	3L_673820_SNP [dm3] 3L_673820_SNP [dm6]	C	A	1.232e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	22223921	3R_22223921_SNP [dm3] 3R_26398199_SNP [dm6]	G	T	1.235e^-4	0.931	INTERGENIC
X	5877675	X_5877675_INS [dm3] X_5983642_INS [dm6]	T	TCTTGGTCTG	1.239e^-4	0.931	INTRON Grip
3R	23268536	3R_23268536_SNP [dm3] 3R_27442814_SNP [dm6]	C	T	1.242e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	11005612	X_11005612_SNP [dm3] X_11111579_SNP [dm6]	T	C	1.244e^-4	0.931	SYNONYMOUS_CODING Hsp60 DOWNSTREAM CG11122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17394700	3L_17394700_SNP [dm3] 3L_17401600_SNP [dm6]	T	A	1.268e^-4	0.931	UPSTREAM noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6202477	2R_6202477_SNP [dm3] 2R_10314972_SNP [dm6]	G	T	1.273e^-4	0.931	INTRON Ndg	TF binding site BDTNP1_TFBS_twi
3L	18008970	3L_18008970_INS [dm3] 3L_18015870_INS [dm6]	T	TGTGT	1.275e^-4	0.931	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18769097	3R_18769097_SNP [dm3] 3R_22943375_SNP [dm6]	A	G	1.283e^-4	0.931	INTRON klg
2R	7051054	2R_7051054_SNP [dm3] 2R_11163549_SNP [dm6]	T	C	1.289e^-4	0.931	INTRON shn & 1 other
2L	6015395	2L_6015395_SNP [dm3] 2L_6015395_SNP [dm6]	C	A	1.290e^-4	0.931	INTRON H2.0
2L	21371023	2L_21371023_SNP [dm3] 2L_21371023_SNP [dm6]	A	G	1.295e^-4	0.931	UPSTREAM CG8665 INTERGENIC
2R	18734341	2R_18734341_SNP [dm3] 2R_22846818_SNP [dm6]	A	T	1.298e^-4	0.931	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17401332	3L_17401332_SNP [dm3] 3L_17408232_SNP [dm6]	A	C	1.306e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	3326514	2L_3326514_SNP [dm3] 2L_3326514_SNP [dm6]	C	T	1.315e^-4	0.931	SYNONYMOUS_CODING CG33281
2R	9937201	2R_9937201_SNP [dm3] 2R_14049696_SNP [dm6]	A	G	1.319e^-4	0.931	INTRON mam	TF binding site BDTNP1_TFBS_prd
3R	11460974	3R_11460974_SNP [dm3] 3R_15635252_SNP [dm6]	A	G	1.325e^-4	0.931	UPSTREAM CG43335 INTERGENIC
2R	7516785	2R_7516785_SNP [dm3] 2R_11629280_SNP [dm6]	T	G	1.325e^-4	0.931	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14413193	2L_14413193_SNP [dm3] 2L_14413193_SNP [dm6]	T	C	1.327e^-4	0.931	INTERGENIC
2R	18734347	2R_18734347_SNP [dm3] 2R_22846824_SNP [dm6]	T	C	1.333e^-4	0.931	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5717811	2R_5717811_SNP [dm3] 2R_9830306_SNP [dm6]	G	A	1.339e^-4	0.931	INTRON hebe
3L	8825785	3L_8825785_SNP [dm3] 3L_8832685_SNP [dm6]	G	A	1.347e^-4	0.931	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11442981	2R_11442981_SNP [dm3] 2R_15555476_SNP [dm6]	G	A	1.351e^-4	0.931	UTR_5_PRIME CG12963 UPSTREAM CG12963
3L	21222200	3L_21222200_SNP [dm3] 3L_21229100_SNP [dm6]	A	T	1.352e^-4	0.931	INTRON Eip78C
2L	3326511	2L_3326511_SNP [dm3] 2L_3326511_SNP [dm6]	T	A	1.353e^-4	0.931	SYNONYMOUS_CODING CG33281
2L	3326526	2L_3326526_SNP [dm3] 2L_3326526_SNP [dm6]	C	T	1.353e^-4	0.931	SYNONYMOUS_CODING CG33281
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.354e^-4	0.931	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	7978486	X_7978486_SNP [dm3] X_8084453_SNP [dm6]	G	A	1.360e^-4	0.931	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
3R	10572536	3R_10572536_SNP [dm3] 3R_14746814_SNP [dm6]	G	A	1.370e^-4	0.931	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	5282779	3L_5282779_SNP [dm3] 3L_5289679_SNP [dm6]	A	C	1.371e^-4	0.931	INTERGENIC
2R	9940130	2R_9940130_SNP [dm3] 2R_14052625_SNP [dm6]	G	C	1.372e^-4	0.931	INTRON mam
2R	9940099	2R_9940099_SNP [dm3] 2R_14052594_SNP [dm6]	G	A	1.373e^-4	0.931	INTRON mam
2L	8066813	2L_8066813_SNP [dm3] 2L_8066813_SNP [dm6]	A	G	1.382e^-4	0.931	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	10856610	2R_10856610_SNP [dm3] 2R_14969105_SNP [dm6]	C	A	1.384e^-4	0.931	INTRON ckn	TF binding site BDTNP1_TFBS_dl
X	12891081	X_12891081_SNP [dm3] X_12997048_SNP [dm6]	T	G	1.384e^-4	0.931	INTRON rad
3L	2726300	3L_2726300_SNP [dm3] 3L_2726300_SNP [dm6]	T	C	1.392e^-4	0.931	INTRON Mrtf
2R	16022708	2R_16022708_SNP [dm3] 2R_20135203_SNP [dm6]	C	T	1.419e^-4	0.931	INTERGENIC
3R	1623440	3R_1623440_SNP [dm3] 3R_5797718_SNP [dm6]	C	T	1.434e^-4	0.931	NON_SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da
3R	15177194	3R_15177194_SNP [dm3] 3R_19351472_SNP [dm6]	C	T	1.451e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	17387733	3L_17387733_SNP [dm3] 3L_17394633_SNP [dm6]	A	T	1.467e^-4	0.931	INTERGENIC
3L	8772937	3L_8772937_SNP [dm3] 3L_8779837_SNP [dm6]	C	A	1.467e^-4	0.931	INTRON Fhos
2L	7762175	2L_7762175_SNP [dm3] 2L_7762175_SNP [dm6]	A	T	1.467e^-4	0.931	INTRON CG7196
2R	14356573	2R_14356573_SNP [dm3] 2R_18469068_SNP [dm6]	T	A	1.481e^-4	0.931	INTRON CG30116
3R	10576277	3R_10576277_SNP [dm3] 3R_14750555_SNP [dm6]	C	A	1.486e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2R	5717703	2R_5717703_SNP [dm3] 2R_9830198_SNP [dm6]	A	T	1.488e^-4	0.931	INTRON hebe
2R	5714451	2R_5714451_SNP [dm3] 2R_9826946_SNP [dm6]	T	C	1.490e^-4	0.931	SYNONYMOUS_CODING dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10914484	2R_10914484_SNP [dm3] 2R_15026979_SNP [dm6]	G	A	1.492e^-4	0.931	INTRON hbs	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	3835002	3L_3835002_SNP [dm3] 3L_3835002_SNP [dm6]	C	T	1.493e^-4	0.931	INTRON enc
2L	7762170	2L_7762170_SNP [dm3] 2L_7762170_SNP [dm6]	A	G	1.493e^-4	0.931	INTRON CG7196
2L	7749126	2L_7749126_SNP [dm3] 2L_7749126_SNP [dm6]	T	C	1.494e^-4	0.931	INTERGENIC
3R	10544242	3R_10544242_SNP [dm3] 3R_14718520_SNP [dm6]	C	A	1.496e^-4	0.931	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15049345	X_15049345_INS [dm3] X_15155312_INS [dm6]	T	TAT	1.498e^-4	0.931	INTRON CG9095
X	15055547	X_15055547_SNP [dm3] X_15161514_SNP [dm6]	G	A	1.500e^-4	0.931	INTRON CG9095
X	15056725	X_15056725_SNP [dm3] X_15162692_SNP [dm6]	T	C	1.500e^-4	0.931	UTR_5_PRIME CG9095	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.501e^-4	0.931	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5064243	X_5064243_SNP [dm3] X_5170210_SNP [dm6]	C	A	1.505e^-4	0.931	INTRON rg & 1 other
2R	18717670	2R_18717670_SNP [dm3] 2R_22830147_SNP [dm6]	A	G	1.506e^-4	0.931	SYNONYMOUS_CODING CG30272
2R	15476367	2R_15476367_SNP [dm3] 2R_19588862_SNP [dm6]	T	A	1.508e^-4	0.931	INTRON sm
2R	7018071	2R_7018071_SNP [dm3] 2R_11130566_SNP [dm6]	G	A	1.510e^-4	0.931	INTERGENIC
3L	4422023	3L_4422023_SNP [dm3] 3L_4422023_SNP [dm6]	G	A	1.519e^-4	0.931	UTR_5_PRIME CG15020
3R	11366703	3R_11366703_SNP [dm3] 3R_15540981_SNP [dm6]	G	A	1.524e^-4	0.931	INTRON CG18519	TF binding site mE1_TFBS_chinmo
3R	22950471	3R_22950471_SNP [dm3] 3R_27124749_SNP [dm6]	G	T	1.539e^-4	0.931	UPSTREAM CG6059 DOWNSTREAM CG6051 INTERGENIC
2L	9029008	2L_9029008_SNP [dm3] 2L_9029008_SNP [dm6]	A	C	1.541e^-4	0.931	INTRON CG9582 & 1 other
X	15054997	X_15054997_SNP [dm3] X_15160964_SNP [dm6]	G	T	1.552e^-4	0.931	INTRON CG9095
3R	24250637	3R_24250637_SNP [dm3] 3R_28424915_SNP [dm6]	C	T	1.556e^-4	0.931	INTRON beat-VI
3R	18664895	3R_18664895_SNP [dm3] 3R_22839173_SNP [dm6]	C	G	1.558e^-4	0.931	INTERGENIC
X	15055494	X_15055494_SNP [dm3] X_15161461_SNP [dm6]	C	T	1.559e^-4	0.931	INTRON CG9095
3L	17401316	3L_17401316_SNP [dm3] 3L_17408216_SNP [dm6]	T	A	1.574e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	7014069	2L_7014069_SNP [dm3] 2L_7014069_SNP [dm6]	G	C	1.583e^-4	0.931	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
X	16289076	X_16289076_SNP [dm3] X_16395043_SNP [dm6]	G	A	1.588e^-4	0.931	SYNONYMOUS_CODING mei-41
3R	18496052	3R_18496052_SNP [dm3] 3R_22670330_SNP [dm6]	C	T	1.588e^-4	0.931	INTRON CG45058
2R	10216966	2R_10216966_SNP [dm3] 2R_14329461_SNP [dm6]	T	A	1.589e^-4	0.931	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2R	15322942	2R_15322942_SNP [dm3] 2R_19435437_SNP [dm6]	C	G	1.602e^-4	0.931	SYNONYMOUS_CODING Fak
2R	18914524	2R_18914524_SNP [dm3] 2R_23027001_SNP [dm6]	C	T	1.613e^-4	0.931	INTRON twi & 1 other
2L	1291343	2L_1291343_SNP [dm3] 2L_1291343_SNP [dm6]	A	C	1.624e^-4	0.931	INTRON robo3
2L	9771048	2L_9771048_SNP [dm3] 2L_9771048_SNP [dm6]	T	C	1.628e^-4	0.931	UPSTREAM ppk18 DOWNSTREAM ppk16 & 1 other INTERGENIC
2R	15465369	2R_15465369_SNP [dm3] 2R_19577864_SNP [dm6]	A	T	1.632e^-4	0.931	INTRON sm
2R	12051227	2R_12051227_SNP [dm3] 2R_16163722_SNP [dm6]	G	T	1.639e^-4	0.931	INTRON lbk	TF binding site BDTNP1_TFBS_dl
X	15818773	X_15818773_SNP [dm3] X_15924740_SNP [dm6]	G	A	1.657e^-4	0.931	UPSTREAM Lcch3 DOWNSTREAM CG8916 INTERGENIC
3L	3834947	3L_3834947_SNP [dm3] 3L_3834947_SNP [dm6]	T	A	1.658e^-4	0.931	INTRON enc
3R	10544231	3R_10544231_SNP [dm3] 3R_14718509_SNP [dm6]	A	G	1.660e^-4	0.931	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15995307	2R_15995307_DEL [dm3] 2R_20107802_DEL [dm6]	GG	G	1.665e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9029011	2L_9029011_SNP [dm3] 2L_9029011_SNP [dm6]	A	G	1.670e^-4	0.931	INTRON CG9582 & 1 other
2R	18202901	2R_18202901_SNP [dm3] 2R_22315396_SNP [dm6]	C	T	1.670e^-4	0.931	INTRON CR44758
2L	13874312	2L_13874312_SNP [dm3] 2L_13874312_SNP [dm6]	C	T	1.691e^-4	0.931	INTRON CenG1A
3R	10534968	3R_10534968_SNP [dm3] 3R_14709246_SNP [dm6]	C	A	1.702e^-4	0.931	INTRON kibra
3R	18434890	3R_18434890_SNP [dm3] 3R_22609168_SNP [dm6]	A	G	1.702e^-4	0.931	SYNONYMOUS_CODING CG31156 UPSTREAM CG13843 DOWNSTREAM Efa6
3L	4545191	3L_4545191_SNP [dm3] 3L_4545191_SNP [dm6]	T	A	1.706e^-4	0.931	INTRON CG11357	TF binding site BDTNP1_TFBS_twi
3R	19224169	3R_19224169_SNP [dm3] 3R_23398447_SNP [dm6]	G	T	1.708e^-4	0.931	DOWNSTREAM CR44323 INTERGENIC
X	15056278	X_15056278_SNP [dm3] X_15162245_SNP [dm6]	A	T	1.708e^-4	0.931	INTRON CG9095	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15056279	X_15056279_SNP [dm3] X_15162246_SNP [dm6]	C	T	1.708e^-4	0.931	INTRON CG9095	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18202915	2R_18202915_SNP [dm3] 2R_22315410_SNP [dm6]	G	C	1.714e^-4	0.931	INTRON CR44758
3L	17689196	3L_17689196_SNP [dm3] 3L_17696096_SNP [dm6]	T	G	1.724e^-4	0.931	INTRON Ccn
3L	17689203	3L_17689203_SNP [dm3] 3L_17696103_SNP [dm6]	A	G	1.724e^-4	0.931	INTRON Ccn
3L	17689215	3L_17689215_SNP [dm3] 3L_17696115_SNP [dm6]	A	T	1.724e^-4	0.931	INTRON Ccn
3L	24302079	3L_24302079_SNP [dm3] 3L_24308979_SNP [dm6]	C	T	1.726e^-4	0.931	INTERGENIC
2L	14413190	2L_14413190_SNP [dm3] 2L_14413190_SNP [dm6]	C	A	1.731e^-4	0.931	INTERGENIC
2L	13971804	2L_13971804_SNP [dm3] 2L_13971804_SNP [dm6]	C	T	1.734e^-4	0.931	SYNONYMOUS_CODING NimB5 DOWNSTREAM He	TF binding site mE1_TFBS_cad
3L	7099023	3L_7099023_SNP [dm3] 3L_7105923_SNP [dm6]	A	G	1.735e^-4	0.931	INTRON form3
2R	6182334	2R_6182334_DEL [dm3] 2R_10294829_DEL [dm6]	TGCCT	T	1.741e^-4	0.931	INTRON CAP	TF binding site mE1_TFBS_sens
3L	6929906	3L_6929906_SNP [dm3] 3L_6936806_SNP [dm6]	C	T	1.750e^-4	0.931	UPSTREAM CR45415 EXON CR45414	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14413263	2L_14413263_SNP [dm3] 2L_14413263_SNP [dm6]	C	G	1.760e^-4	0.931	INTERGENIC
3R	9134529	3R_9134529_SNP [dm3] 3R_13308807_SNP [dm6]	G	A	1.765e^-4	0.931	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
2R	16308296	2R_16308296_SNP [dm3] 2R_20420791_SNP [dm6]	T	A	1.766e^-4	0.931	INTERGENIC
3R	24967311	3R_24967311_SNP [dm3] 3R_29141589_SNP [dm6]	A	C	1.772e^-4	0.931	INTRON CG14516
2L	3871890	2L_3871890_SNP [dm3] 2L_3871890_SNP [dm6]	C	A	1.782e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	1.797e^-4	0.931	INTRON Eip93F
2R	6418832	2R_6418832_INS [dm3] 2R_10531327_INS [dm6]	A	AA	1.805e^-4	0.931	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl
X	15810740	X_15810740_DEL [dm3] X_15916707_DEL [dm6]	AT	A	1.814e^-4	0.931	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
3L	1145625	3L_1145625_SNP [dm3] 3L_1145625_SNP [dm6]	A	G	1.818e^-4	0.931	INTRON bab2
3R	10576200	3R_10576200_DEL [dm3] 3R_14750478_DEL [dm6]	ATAA	A	1.833e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	16432173	2L_16432173_SNP [dm3] 2L_16432173_SNP [dm6]	A	T	1.846e^-4	0.931	INTRON CG5888
X	8222317	X_8222317_SNP [dm3] X_8328284_SNP [dm6]	T	A	1.859e^-4	0.931	INTRON nAChRalpha3
2R	16180844	2R_16180844_DEL [dm3] 2R_20293339_DEL [dm6]	TT	T	1.865e^-4	0.931	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
3R	26605267	3R_26605267_SNP [dm3] 3R_30779545_SNP [dm6]	T	C	1.866e^-4	0.931	INTRON zfh1
2R	18704014	2R_18704014_SNP [dm3] 2R_22816509_SNP [dm6]	C	G	1.888e^-4	0.931	UTR_5_PRIME CG30271 UPSTREAM CG30271 DOWNSTREAM stl
2L	7437118	2L_7437118_INS [dm3] 2L_7437118_INS [dm6]	T	TAAT	1.889e^-4	0.931	UPSTREAM CG5973 INTERGENIC
2R	7018284	2R_7018284_SNP [dm3] 2R_11130779_SNP [dm6]	A	C	1.912e^-4	0.931	INTERGENIC
2R	10630882	2R_10630882_SNP [dm3] 2R_14743377_SNP [dm6]	G	A	1.913e^-4	0.931	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14971647	2L_14971647_SNP [dm3] 2L_14971647_SNP [dm6]	C	T	1.916e^-4	0.931	UTR_5_PRIME CG42313
X	8222286	X_8222286_SNP [dm3] X_8328253_SNP [dm6]	A	C	1.920e^-4	0.931	INTRON nAChRalpha3
2R	14620203	2R_14620203_SNP [dm3] 2R_18732698_SNP [dm6]	C	G	1.923e^-4	0.931	INTRON Hs3st-A
2L	6757115	2L_6757115_SNP [dm3] 2L_6757115_SNP [dm6]	T	G	1.933e^-4	0.931	DOWNSTREAM CG11221 & 1 other INTERGENIC
X	18227247	X_18227247_SNP [dm3] X_18333214_SNP [dm6]	C	T	1.937e^-4	0.931	INTRON CG6123
2L	7102226	2L_7102226_SNP [dm3] 2L_7102226_SNP [dm6]	T	C	1.938e^-4	0.931	INTRON Pvf3
3L	19229719	3L_19229719_SNP [dm3] 3L_19236619_SNP [dm6]	C	T	1.939e^-4	0.931	SYNONYMOUS_CODING CG33647
3L	4692674	3L_4692674_SNP [dm3] 3L_4692674_SNP [dm6]	A	G	1.956e^-4	0.931	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19206708	X_19206708_SNP [dm3] X_19312675_SNP [dm6]	C	A	1.969e^-4	0.931	NON_SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
2R	8891386	2R_8891386_SNP [dm3] 2R_13003881_SNP [dm6]	C	T	1.979e^-4	0.931	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15565577	2R_15565577_SNP [dm3] 2R_19678072_SNP [dm6]	T	C	1.981e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17480673	2R_17480673_SNP [dm3] 2R_21593168_SNP [dm6]	T	C	1.992e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7749128	2L_7749128_SNP [dm3] 2L_7749128_SNP [dm6]	G	A	1.998e^-4	0.931	INTERGENIC
2L	5489708	2L_5489708_SNP [dm3] 2L_5489708_SNP [dm6]	C	G	1.998e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5302080	2L_5302080_INS [dm3] 2L_5302080_INS [dm6]	T	TGAAGCCTGACGTGTTTAAG...	1.999e^-4	0.931	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7899603	3L_7899603_SNP [dm3] 3L_7906503_SNP [dm6]	A	C	2.001e^-4	0.931	INTRON pbl
3L	9066451	3L_9066451_SNP [dm3] 3L_9073351_SNP [dm6]	C	T	2.006e^-4	0.931	SYNONYMOUS_CODING CG4942 UPSTREAM CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14885651	3R_14885651_SNP [dm3] 3R_19059929_SNP [dm6]	G	C	2.013e^-4	0.931	INTRON cdi	TF binding site BDTNP1_TFBS_dl
3L	17401310	3L_17401310_SNP [dm3] 3L_17408210_SNP [dm6]	C	A	2.020e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	8346066	2L_8346066_SNP [dm3] 2L_8346066_SNP [dm6]	C	A	2.031e^-4	0.931	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3872031	2L_3872031_SNP [dm3] 2L_3872031_SNP [dm6]	T	G	2.034e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	13091481	3L_13091481_INS [dm3] 3L_13098381_INS [dm6]	C	CGC	2.036e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	10576268	3R_10576268_INS [dm3] 3R_14750546_INS [dm6]	T	TT	2.047e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
X	4655848	X_4655848_SNP [dm3] X_4761815_SNP [dm6]	A	T	2.048e^-4	0.931	INTERGENIC
X	19973765	X_19973765_SNP [dm3] X_20079732_SNP [dm6]	C	T	2.052e^-4	0.931	INTERGENIC
2L	16069101	2L_16069101_SNP [dm3] 2L_16069101_SNP [dm6]	C	G	2.057e^-4	0.931	INTRON beat-Ia
3L	9900731	3L_9900731_SNP [dm3] 3L_9907631_SNP [dm6]	A	G	2.063e^-4	0.931	UPSTREAM CG34356 INTERGENIC
2L	3492145	2L_3492145_SNP [dm3] 2L_3492145_SNP [dm6]	G	A	2.063e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16574938	3R_16574938_DEL [dm3] 3R_20749216_DEL [dm6]	AAAACTCCCCA...	A	2.065e^-4	0.931	UPSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2726324	3L_2726324_SNP [dm3] 3L_2726324_SNP [dm6]	A	C	2.071e^-4	0.931	INTRON Mrtf
2R	15078069	2R_15078069_SNP [dm3] 2R_19190564_SNP [dm6]	T	C	2.073e^-4	0.931	INTRON hppy
2L	9666532	2L_9666532_SNP [dm3] 2L_9666532_SNP [dm6]	C	T	2.073e^-4	0.931	INTERGENIC
X	15810734	X_15810734_SNP [dm3] X_15916701_SNP [dm6]	C	G	2.086e^-4	0.931	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
3R	15176947	3R_15176947_SNP [dm3] 3R_19351225_SNP [dm6]	A	G	2.094e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15437245	X_15437245_INS [dm3] X_15543212_INS [dm6]	T	TGT	2.104e^-4	0.931	INTRON Ac13E
2L	9028998	2L_9028998_SNP [dm3] 2L_9028998_SNP [dm6]	G	T	2.109e^-4	0.931	INTRON CG9582 & 1 other
X	2670549	X_2670549_SNP [dm3] X_2776516_SNP [dm6]	T	A	2.114e^-4	0.931	INTRON kirre
3L	8160222	3L_8160222_SNP [dm3] 3L_8167122_SNP [dm6]	T	G	2.116e^-4	0.931	INTERGENIC
3L	20877492	3L_20877492_SNP [dm3] 3L_20884392_SNP [dm6]	T	A	2.128e^-4	0.931	INTRON CG32432
2R	11467089	2R_11467089_SNP [dm3] 2R_15579584_SNP [dm6]	A	G	2.146e^-4	0.931	INTERGENIC
2R	10345215	2R_10345215_SNP [dm3] 2R_14457710_SNP [dm6]	T	C	2.147e^-4	0.931	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16345308	2R_16345308_SNP [dm3] 2R_20457803_SNP [dm6]	C	T	2.150e^-4	0.931	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	17984333	3L_17984333_SNP [dm3] 3L_17991233_SNP [dm6]	G	T	2.155e^-4	0.931	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5714073	2R_5714073_SNP [dm3] 2R_9826568_SNP [dm6]	A	G	2.160e^-4	0.931	NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2773614	2R_2773614_SNP [dm3] 2R_6886109_SNP [dm6]	C	T	2.162e^-4	0.931	UPSTREAM Spn42De INTRON Spn42De	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13574479	3R_13574479_SNP [dm3] 3R_17748757_SNP [dm6]	T	C	2.167e^-4	0.931	INTERGENIC
2L	5903477	2L_5903477_SNP [dm3] 2L_5903477_SNP [dm6]	A	G	2.168e^-4	0.931	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15747308	3L_15747308_SNP [dm3] 3L_15754208_SNP [dm6]	T	A	2.182e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3835010	3L_3835010_SNP [dm3] 3L_3835010_SNP [dm6]	A	G	2.186e^-4	0.931	INTRON enc
2L	8448217	2L_8448217_SNP [dm3] 2L_8448217_SNP [dm6]	T	C	2.191e^-4	0.931	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
3R	23767035	3R_23767035_SNP [dm3] 3R_27941313_SNP [dm6]	T	C	2.192e^-4	0.931	SYNONYMOUS_CODING CG5514
2L	3871939	2L_3871939_SNP [dm3] 2L_3871939_SNP [dm6]	C	A	2.197e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6156598	2R_6156598_SNP [dm3] 2R_10269093_SNP [dm6]	G	A	2.199e^-4	0.931	NON_SYNONYMOUS_CODING CAP UTR_3_PRIME CG12910	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6110226	2R_6110226_SNP [dm3] 2R_10222721_SNP [dm6]	T	C	2.200e^-4	0.931	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	18203442	2R_18203442_SNP [dm3] 2R_22315937_SNP [dm6]	A	G	2.201e^-4	0.931	INTRON CR44758
2R	7020297	2R_7020297_SNP [dm3] 2R_11132792_SNP [dm6]	T	C	2.203e^-4	0.931	INTERGENIC
3L	10925923	3L_10925923_SNP [dm3] 3L_10932823_SNP [dm6]	G	A	2.206e^-4	0.931	INTERGENIC
3L	19232894	3L_19232894_SNP [dm3] 3L_19239794_SNP [dm6]	C	T	2.217e^-4	0.931	DOWNSTREAM CR43892 INTERGENIC
3R	10360604	3R_10360604_SNP [dm3] 3R_14534882_SNP [dm6]	G	A	2.218e^-4	0.931	INTRON Pde6
2R	12125675	2R_12125675_SNP [dm3] 2R_16238170_SNP [dm6]	A	T	2.220e^-4	0.931	UTR_3_PRIME krimp DOWNSTREAM CG3687
3R	16457949	3R_16457949_SNP [dm3] 3R_20632227_SNP [dm6]	C	T	2.222e^-4	0.931	SYNONYMOUS_CODING Pi3K92E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18263424	3R_18263424_SNP [dm3] 3R_22437702_SNP [dm6]	A	G	2.223e^-4	0.931	INTERGENIC
3R	18434847	3R_18434847_SNP [dm3] 3R_22609125_SNP [dm6]	A	G	2.223e^-4	0.931	UPSTREAM CG13843 DOWNSTREAM Efa6 INTRON CG31156
3L	5890366	3L_5890366_SNP [dm3] 3L_5897266_SNP [dm6]	A	G	2.226e^-4	0.931	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14478561	2L_14478561_SNP [dm3] 2L_14478561_SNP [dm6]	T	A	2.232e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18479510	3R_18479510_SNP [dm3] 3R_22653788_SNP [dm6]	T	C	2.232e^-4	0.931	INTRON CG45058
2R	18598851	2R_18598851_SNP [dm3] 2R_22711346_SNP [dm6]	A	T	2.236e^-4	0.931	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	25286011	3R_25286011_SNP [dm3] 3R_29460289_SNP [dm6]	A	C	2.250e^-4	0.931	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5714087	2R_5714087_SNP [dm3] 2R_9826582_SNP [dm6]	A	C	2.258e^-4	0.931	SPLICE_SITE_DONOR dila NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26134439	3R_26134439_SNP [dm3] 3R_30308717_SNP [dm6]	T	C	2.259e^-4	0.931	INTRON hdc
3L	8034676	3L_8034676_SNP [dm3] 3L_8041576_SNP [dm6]	T	C	2.260e^-4	0.931	INTRON nmo
3L	11357121	3L_11357121_SNP [dm3] 3L_11364021_SNP [dm6]	G	T	2.268e^-4	0.931	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
2L	10746584	2L_10746584_SNP [dm3] 2L_10746584_SNP [dm6]	G	A	2.272e^-4	0.931	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
3R	20949949	3R_20949949_INS [dm3] 3R_25124227_INS [dm6]	A	ATA	2.278e^-4	0.931	INTRON vig2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3708890	2L_3708890_SNP [dm3] 2L_3708890_SNP [dm6]	T	A	2.282e^-4	0.931	INTRON cutlet	TF binding site mE1_TFBS_cad
3R	22004843	3R_22004843_SNP [dm3] 3R_26179121_SNP [dm6]	T	C	2.288e^-4	0.931	INTRON CG31323
3L	11872038	3L_11872038_SNP [dm3] 3L_11878938_SNP [dm6]	A	G	2.303e^-4	0.931	UPSTREAM CG14128 INTRON CG44837
3R	10582377	3R_10582377_SNP [dm3] 3R_14756655_SNP [dm6]	C	T	2.307e^-4	0.931	INTRON jvl
3L	18008953	3L_18008953_MNP [dm3] 3L_18015853_MNP [dm6]	TTC	GGT	2.315e^-4	0.931	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2670556	X_2670556_SNP [dm3] X_2776523_SNP [dm6]	C	T	2.316e^-4	0.931	INTRON kirre
3R	24631301	3R_24631301_SNP [dm3] 3R_28805579_SNP [dm6]	A	T	2.324e^-4	0.931	INTERGENIC
3L	23585316	3L_23585316_SNP [dm3] 3L_23592216_SNP [dm6]	G	C	2.324e^-4	0.931	INTRON AGO3
3R	14175484	3R_14175484_SNP [dm3] 3R_18349762_SNP [dm6]	T	C	2.329e^-4	0.931	INTRON CG15803
2R	15468812	2R_15468812_INS [dm3] 2R_19581307_INS [dm6]	T	TCTT	2.332e^-4	0.931	INTRON sm
3L	23489054	3L_23489054_SNP [dm3] 3L_23495954_SNP [dm6]	T	C	2.333e^-4	0.931	INTERGENIC	transposable element FlyBase
2R	17208687	2R_17208687_SNP [dm3] 2R_21321182_SNP [dm6]	A	T	2.358e^-4	0.931	NON_SYNONYMOUS_CODING CG30394
2L	16995770	2L_16995770_SNP [dm3] 2L_16995770_SNP [dm6]	C	G	2.358e^-4	0.931	INTERGENIC
3L	10856640	3L_10856640_SNP [dm3] 3L_10863540_SNP [dm6]	T	C	2.366e^-4	0.931	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	8660932	3L_8660932_SNP [dm3] 3L_8667832_SNP [dm6]	T	A	2.382e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve
3L	903133	3L_903133_SNP [dm3] 3L_903133_SNP [dm6]	C	G	2.384e^-4	0.931	NON_SYNONYMOUS_CODING CG13905	TF binding site mE1_TFBS_sens
X	15060010	X_15060010_SNP [dm3] X_15165977_SNP [dm6]	T	A	2.390e^-4	0.931	INTERGENIC
2L	11191110	2L_11191110_SNP [dm3] 2L_11191110_SNP [dm6]	C	T	2.391e^-4	0.931	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11961642	2R_11961642_SNP [dm3] 2R_16074137_SNP [dm6]	T	C	2.396e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11951534	X_11951534_SNP [dm3] X_12057501_SNP [dm6]	C	G	2.400e^-4	0.931	UPSTREAM Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11246038	2L_11246038_SNP [dm3] 2L_11246038_SNP [dm6]	A	T	2.403e^-4	0.931	INTRON ab	TF binding site mE1_TFBS_chinmo
2L	10621974	2L_10621974_SNP [dm3] 2L_10621974_SNP [dm6]	C	T	2.408e^-4	0.931	INTRON Trim9
3R	25512143	3R_25512143_SNP [dm3] 3R_29686421_SNP [dm6]	T	C	2.413e^-4	0.931	DOWNSTREAM Gycalpha99B INTRON Obp99c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	521494	3L_521494_SNP [dm3] 3L_521494_SNP [dm6]	C	G	2.421e^-4	0.931	INTRON klar
2L	10621991	2L_10621991_SNP [dm3] 2L_10621991_SNP [dm6]	G	A	2.422e^-4	0.931	INTRON Trim9
3L	1424212	3L_1424212_SNP [dm3] 3L_1424212_SNP [dm6]	C	T	2.430e^-4	0.931	UPSTREAM CG9173 INTRON Ptp61F
X	5844122	X_5844122_SNP [dm3] X_5950089_SNP [dm6]	C	A	2.433e^-4	0.931	NON_SYNONYMOUS_CODING CG6041 UPSTREAM CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	22308835	2L_22308835_SNP [dm3] 2L_22308835_SNP [dm6]	G	T	2.440e^-4	0.931	START_GAINED CG17018 UTR_5_PRIME CG17018	transposable element FlyBase
3L	17401290	3L_17401290_SNP [dm3] 3L_17408190_SNP [dm6]	G	A	2.448e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10461622	2R_10461622_SNP [dm3] 2R_14574117_SNP [dm6]	G	T	2.449e^-4	0.931	INTRON ttv & 1 other
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.457e^-4	0.931	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11306897	X_11306897_SNP [dm3] X_11412864_SNP [dm6]	C	T	2.462e^-4	0.931	SYNONYMOUS_CODING Gr10b DOWNSTREAM Gr10a
3R	11465516	3R_11465516_SNP [dm3] 3R_15639794_SNP [dm6]	C	T	2.466e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14763096	3L_14763096_SNP [dm3] 3L_14769996_SNP [dm6]	A	G	2.478e^-4	0.931	UPSTREAM CG17173 INTRON mop
X	16216534	X_16216534_SNP [dm3] X_16322501_SNP [dm6]	G	A	2.486e^-4	0.931	SYNONYMOUS_CODING CG9917 UPSTREAM CG32579	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	6593824	2R_6593824_SNP [dm3] 2R_10706319_SNP [dm6]	T	C	2.500e^-4	0.931	UTR_5_PRIME stan	TF binding site mE1_TFBS_cad
2R	10461628	2R_10461628_SNP [dm3] 2R_14574123_SNP [dm6]	C	T	2.502e^-4	0.931	INTRON ttv & 1 other
3R	18664962	3R_18664962_SNP [dm3] 3R_22839240_SNP [dm6]	T	G	2.514e^-4	0.931	INTERGENIC
2R	14492538	2R_14492538_SNP [dm3] 2R_18605033_SNP [dm6]	G	T	2.529e^-4	0.931	INTRON GEFmeso
3R	13794928	3R_13794928_SNP [dm3] 3R_17969206_SNP [dm6]	T	A	2.529e^-4	0.931	INTRON cpo
X	6409832	X_6409832_SNP [dm3] X_6515799_SNP [dm6]	G	C	2.537e^-4	0.931	INTRON CG42340
3R	14175470	3R_14175470_SNP [dm3] 3R_18349748_SNP [dm6]	C	T	2.537e^-4	0.931	INTRON CG15803
3R	25953010	3R_25953010_SNP [dm3] 3R_30127288_SNP [dm6]	A	G	2.543e^-4	0.931	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9168808	3R_9168808_SNP [dm3] 3R_13343086_SNP [dm6]	G	C	2.543e^-4	0.931	INTRON PK2-R1
2R	17456080	2R_17456080_SNP [dm3] 2R_21568575_SNP [dm6]	C	T	2.544e^-4	0.931	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8160357	3L_8160357_SNP [dm3] 3L_8167257_SNP [dm6]	A	G	2.544e^-4	0.931	INTERGENIC
2L	13938461	2L_13938461_SNP [dm3] 2L_13938461_SNP [dm6]	C	G	2.548e^-4	0.931	INTRON Ance-3
2R	10856613	2R_10856613_SNP [dm3] 2R_14969108_SNP [dm6]	G	A	2.550e^-4	0.931	INTRON ckn	TF binding site BDTNP1_TFBS_dl
2R	9123016	2R_9123016_SNP [dm3] 2R_13235511_SNP [dm6]	T	G	2.565e^-4	0.931	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15738208	2R_15738208_SNP [dm3] 2R_19850703_SNP [dm6]	G	A	2.566e^-4	0.931	INTERGENIC
3R	17689509	3R_17689509_SNP [dm3] 3R_21863787_SNP [dm6]	G	T	2.569e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6198827	2R_6198827_SNP [dm3] 2R_10311322_SNP [dm6]	G	A	2.569e^-4	0.931	SYNONYMOUS_CODING Obp46a DOWNSTREAM CG12909	TF binding site mE1_TFBS_sens
2L	9191890	2L_9191890_SNP [dm3] 2L_9191890_SNP [dm6]	C	G	2.584e^-4	0.931	INTRON tai
3R	18743550	3R_18743550_SNP [dm3] 3R_22917828_SNP [dm6]	A	C	2.593e^-4	0.931	INTRON klg
3L	17574797	3L_17574797_SNP [dm3] 3L_17581697_SNP [dm6]	A	C	2.602e^-4	0.931	INTRON Eip74EF
2R	15321170	2R_15321170_SNP [dm3] 2R_19433665_SNP [dm6]	A	T	2.602e^-4	0.931	INTRON Fak	TF binding site mE1_TFBS_inv
2L	22608881	2L_22608881_SNP [dm3] 2L_22716149_SNP [dm6]	G	T	2.605e^-4	0.931	INTRON CG40006
3L	3834993	3L_3834993_SNP [dm3] 3L_3834993_SNP [dm6]	T	G	2.606e^-4	0.931	INTRON enc
3R	10651991	3R_10651991_SNP [dm3] 3R_14826269_SNP [dm6]	C	A	2.615e^-4	0.931	SYNONYMOUS_CODING btsz
2R	18383370	2R_18383370_SNP [dm3] 2R_22495865_SNP [dm6]	A	G	2.625e^-4	0.931	UTR_3_PRIME px DOWNSTREAM px
X	3904039	X_3904039_SNP [dm3] X_4010006_SNP [dm6]	A	G	2.629e^-4	0.931	INTERGENIC
3R	16241759	3R_16241759_SNP [dm3] 3R_20416037_SNP [dm6]	A	G	2.647e^-4	0.931	INTRON Gfrl
3R	15098952	3R_15098952_SNP [dm3] 3R_19273230_SNP [dm6]	C	T	2.649e^-4	0.931	INTERGENIC
2L	5686305	2L_5686305_SNP [dm3] 2L_5686305_SNP [dm6]	C	T	2.653e^-4	0.931	INTERGENIC
X	19430452	X_19430452_SNP [dm3] X_19536419_SNP [dm6]	T	C	2.659e^-4	0.931	INTRON CG32532
3R	17662696	3R_17662696_SNP [dm3] 3R_21836974_SNP [dm6]	A	T	2.661e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18680270	3R_18680270_SNP [dm3] 3R_22854548_SNP [dm6]	C	G	2.670e^-4	0.931	INTERGENIC
X	16362529	X_16362529_DEL [dm3] X_16468496_DEL [dm6]	TTGT	T	2.674e^-4	0.931	INTRON para
3R	17250662	3R_17250662_SNP [dm3] 3R_21424940_SNP [dm6]	A	T	2.676e^-4	0.931	INTRON lbl
3L	5238072	3L_5238072_SNP [dm3] 3L_5244972_SNP [dm6]	G	A	2.680e^-4	0.931	INTRON shep
3L	673681	3L_673681_SNP [dm3] 3L_673681_SNP [dm6]	A	G	2.688e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	9898232	3L_9898232_SNP [dm3] 3L_9905132_SNP [dm6]	C	G	2.688e^-4	0.931	INTERGENIC
X	7897432	X_7897432_SNP [dm3] X_8003399_SNP [dm6]	T	C	2.689e^-4	0.931	INTRON Tbh
X	12094660	X_12094660_DEL [dm3] X_12200627_DEL [dm6]	GG	G	2.700e^-4	0.931	INTRON Ten-a
2L	3872032	2L_3872032_SNP [dm3] 2L_3872032_SNP [dm6]	T	A	2.701e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	3872044	2L_3872044_SNP [dm3] 2L_3872044_SNP [dm6]	A	T	2.701e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	18514636	2R_18514636_SNP [dm3] 2R_22627131_SNP [dm6]	T	C	2.702e^-4	0.931	INTRON CG33143
2R	7022038	2R_7022038_SNP [dm3] 2R_11134533_SNP [dm6]	A	G	2.702e^-4	0.931	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18019339	3L_18019339_SNP [dm3] 3L_18026239_SNP [dm6]	C	T	2.704e^-4	0.931	INTRON Eip75B
2L	7749271	2L_7749271_SNP [dm3] 2L_7749271_SNP [dm6]	T	A	2.709e^-4	0.931	INTERGENIC
2L	4109437	2L_4109437_SNP [dm3] 2L_4109437_SNP [dm6]	C	T	2.711e^-4	0.931	INTRON ed
2R	11747478	2R_11747478_SNP [dm3] 2R_15859973_SNP [dm6]	C	A	2.714e^-4	0.931	INTRON Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14909745	2R_14909745_SNP [dm3] 2R_19022240_SNP [dm6]	T	C	2.720e^-4	0.931	DOWNSTREAM 5-HT1B INTERGENIC
3L	17401372	3L_17401372_SNP [dm3] 3L_17408272_SNP [dm6]	C	T	2.730e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	21754653	2L_21754653_SNP [dm3] 2L_21754653_SNP [dm6]	A	G	2.737e^-4	0.931	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19736342	3R_19736342_SNP [dm3] 3R_23910620_SNP [dm6]	T	C	2.738e^-4	0.931	INTRON sba
2L	3638607	2L_3638607_SNP [dm3] 2L_3638607_SNP [dm6]	A	G	2.741e^-4	0.931	INTRON for
3R	7096851	3R_7096851_SNP [dm3] 3R_11271129_SNP [dm6]	G	A	2.742e^-4	0.931	EXON CR31386
2L	14478391	2L_14478391_SNP [dm3] 2L_14478391_SNP [dm6]	C	T	2.748e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	2.750e^-4	0.931	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	7901186	2R_7901186_SNP [dm3] 2R_12013681_SNP [dm6]	G	A	2.757e^-4	0.931	INTRON otk
3L	5695701	3L_5695701_SNP [dm3] 3L_5702601_SNP [dm6]	G	T	2.771e^-4	0.931	INTRON sif
2R	16697464	2R_16697464_SNP [dm3] 2R_20809959_SNP [dm6]	T	A	2.772e^-4	0.931	INTERGENIC
2L	10940654	2L_10940654_SNP [dm3] 2L_10940654_SNP [dm6]	T	A	2.784e^-4	0.931	INTRON dpr2
3L	6440945	3L_6440945_SNP [dm3] 3L_6447845_SNP [dm6]	C	A	2.786e^-4	0.931	INTRON CG42747
2R	16657029	2R_16657029_SNP [dm3] 2R_20769524_SNP [dm6]	T	G	2.791e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22718540	3R_22718540_SNP [dm3] 3R_26892818_SNP [dm6]	C	T	2.795e^-4	0.931	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	2.797e^-4	0.931	INTERGENIC
3R	14141762	3R_14141762_SNP [dm3] 3R_18316040_SNP [dm6]	G	A	2.799e^-4	0.931	DOWNSTREAM CG31235 INTERGENIC
2L	11037976	2L_11037976_SNP [dm3] 2L_11037976_SNP [dm6]	A	T	2.808e^-4	0.931	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	19111585	X_19111585_SNP [dm3] X_19217552_SNP [dm6]	C	A	2.809e^-4	0.931	DOWNSTREAM Muc18B INTERGENIC
3R	20115169	3R_20115169_SNP [dm3] 3R_24289447_SNP [dm6]	A	T	2.816e^-4	0.931	SPLICE_SITE_REGION CG34290 UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site mE1_TFBS_HSA
3R	7096882	3R_7096882_SNP [dm3] 3R_11271160_SNP [dm6]	C	A	2.825e^-4	0.931	EXON CR31386
X	5592398	X_5592398_SNP [dm3] X_5698365_SNP [dm6]	G	C	2.828e^-4	0.931	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7096859	3R_7096859_SNP [dm3] 3R_11271137_SNP [dm6]	A	G	2.834e^-4	0.931	EXON CR31386
3R	15895297	3R_15895297_SNP [dm3] 3R_20069575_SNP [dm6]	T	C	2.848e^-4	0.931	INTERGENIC
3R	26558207	3R_26558207_SNP [dm3] 3R_30732485_SNP [dm6]	T	A	2.857e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14763087	3L_14763087_INS [dm3] 3L_14769987_INS [dm6]	T	TTTTAATTTA	2.865e^-4	0.931	UPSTREAM CG17173 INTRON mop
X	16650891	X_16650891_SNP [dm3] X_16756858_SNP [dm6]	A	G	2.875e^-4	0.931	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7096881	3R_7096881_SNP [dm3] 3R_11271159_SNP [dm6]	A	T	2.876e^-4	0.931	EXON CR31386
3R	7096991	3R_7096991_SNP [dm3] 3R_11271269_SNP [dm6]	C	T	2.876e^-4	0.931	EXON CR31386
X	15049370	X_15049370_SNP [dm3] X_15155337_SNP [dm6]	C	A	2.883e^-4	0.931	INTRON CG9095
X	15050744	X_15050744_SNP [dm3] X_15156711_SNP [dm6]	A	G	2.883e^-4	0.931	INTRON CG9095	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15053475	X_15053475_SNP [dm3] X_15159442_SNP [dm6]	C	G	2.883e^-4	0.931	INTRON CG9095
X	15053952	X_15053952_SNP [dm3] X_15159919_SNP [dm6]	T	C	2.883e^-4	0.931	INTRON CG9095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19732793	3R_19732793_DEL [dm3] 3R_23907071_DEL [dm6]	TGCAACGTCGGTGT...	T	2.891e^-4	0.931	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16738382	3L_16738382_SNP [dm3] 3L_16745282_SNP [dm6]	G	C	2.893e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	10461710	2R_10461710_SNP [dm3] 2R_14574205_SNP [dm6]	C	T	2.894e^-4	0.931	INTRON ttv & 1 other
2L	13946646	2L_13946646_SNP [dm3] 2L_13946646_SNP [dm6]	G	T	2.900e^-4	0.931	INTRON Ance-3 & 1 other
2L	13946647	2L_13946647_SNP [dm3] 2L_13946647_SNP [dm6]	T	C	2.900e^-4	0.931	INTRON Ance-3 & 1 other
2L	8172377	2L_8172377_SNP [dm3] 2L_8172377_SNP [dm6]	C	T	2.900e^-4	0.931	INTRON Piezo
2R	15182434	2R_15182434_SNP [dm3] 2R_19294929_SNP [dm6]	C	G	2.905e^-4	0.931	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5150131	3R_5150131_SNP [dm3] 3R_9324409_SNP [dm6]	G	C	2.911e^-4	0.931	INTRON CG8861
3R	18263313	3R_18263313_SNP [dm3] 3R_22437591_SNP [dm6]	T	A	2.915e^-4	0.931	INTERGENIC
3L	7937836	3L_7937836_SNP [dm3] 3L_7944736_SNP [dm6]	A	C	2.930e^-4	0.931	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	14055123	3R_14055123_SNP [dm3] 3R_18229401_SNP [dm6]	A	C	2.933e^-4	0.931	DOWNSTREAM Mdh2 INTERGENIC
3L	9244469	3L_9244469_SNP [dm3] 3L_9251369_SNP [dm6]	A	G	2.935e^-4	0.931	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13956214	3R_13956214_SNP [dm3] 3R_18130492_SNP [dm6]	C	T	2.936e^-4	0.931	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14492528	2R_14492528_DEL [dm3] 2R_18605023_DEL [dm6]	ATATGGGGT	A	2.947e^-4	0.931	INTRON GEFmeso
2L	8788867	2L_8788867_SNP [dm3] 2L_8788867_SNP [dm6]	G	T	2.951e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16145129	2R_16145129_SNP [dm3] 2R_20257624_SNP [dm6]	C	T	2.952e^-4	0.931	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10818739	3L_10818739_SNP [dm3] 3L_10825639_SNP [dm6]	T	G	2.957e^-4	0.931	DOWNSTREAM CR45246 INTERGENIC
X	2669154	X_2669154_INS [dm3] X_2775121_INS [dm6]	A	AGA	2.960e^-4	0.931	INTRON kirre
3R	10360606	3R_10360606_SNP [dm3] 3R_14534884_SNP [dm6]	C	A	2.960e^-4	0.931	INTRON Pde6
2R	19964907	2R_19964907_SNP [dm3] 2R_24077384_SNP [dm6]	T	C	2.961e^-4	0.931	SPLICE_SITE_REGION Mlp60A DOWNSTREAM CG10339 INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25514542	3R_25514542_SNP [dm3] 3R_29688820_SNP [dm6]	A	G	2.964e^-4	0.931	INTRON Obp99c
3L	4169927	3L_4169927_SNP [dm3] 3L_4169927_SNP [dm6]	C	T	2.969e^-4	0.931	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5716268	2R_5716268_SNP [dm3] 2R_9828763_SNP [dm6]	A	G	2.969e^-4	0.931	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad
3R	19067176	3R_19067176_SNP [dm3] 3R_23241454_SNP [dm6]	A	G	2.983e^-4	0.931	INTRON CG4467
3R	20848790	3R_20848790_SNP [dm3] 3R_25023068_SNP [dm6]	G	T	2.984e^-4	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2L	15410965	2L_15410965_SNP [dm3] 2L_15410965_SNP [dm6]	T	A	2.996e^-4	0.931	INTERGENIC
X	15068270	X_15068270_SNP [dm3] X_15174237_SNP [dm6]	G	A	3.000e^-4	0.931	INTERGENIC
2L	10622072	2L_10622072_SNP [dm3] 2L_10622072_SNP [dm6]	C	A	3.005e^-4	0.931	INTRON Trim9
2L	7748986	2L_7748986_SNP [dm3] 2L_7748986_SNP [dm6]	A	G	3.006e^-4	0.931	INTERGENIC
2L	4448783	2L_4448783_SNP [dm3] 2L_4448783_SNP [dm6]	G	A	3.007e^-4	0.931	UPSTREAM MFS18 DOWNSTREAM CG15439 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3R	19727880	3R_19727880_SNP [dm3] 3R_23902158_SNP [dm6]	C	T	3.019e^-4	0.931	INTRON sba
2L	7491734	2L_7491734_SNP [dm3] 2L_7491734_SNP [dm6]	A	T	3.021e^-4	0.931	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7491786	2L_7491786_INS [dm3] 2L_7491786_INS [dm6]	C	CAA	3.021e^-4	0.931	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	20851428	3L_20851428_SNP [dm3] 3L_20858328_SNP [dm6]	C	T	3.034e^-4	0.931	INTRON CG32432
3L	1085457	3L_1085457_SNP [dm3] 3L_1085457_SNP [dm6]	C	G	3.037e^-4	0.931	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	7794089	2L_7794089_SNP [dm3] 2L_7794089_SNP [dm6]	G	A	3.038e^-4	0.931	SPLICE_SITE_REGION LKR INTRON LKR	TF binding site mE1_TFBS_cad
3R	19487893	3R_19487893_SNP [dm3] 3R_23662171_SNP [dm6]	T	C	3.041e^-4	0.931	INTRON CG31145
2R	15738451	2R_15738451_SNP [dm3] 2R_19850946_SNP [dm6]	T	C	3.054e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6185093	2R_6185093_SNP [dm3] 2R_10297588_SNP [dm6]	C	T	3.054e^-4	0.931	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	15052958	X_15052958_SNP [dm3] X_15158925_SNP [dm6]	G	T	3.054e^-4	0.931	INTRON CG9095
3R	25219435	3R_25219435_SNP [dm3] 3R_29393713_SNP [dm6]	C	T	3.059e^-4	0.931	INTRON Ptp99A
X	15052216	X_15052216_SNP [dm3] X_15158183_SNP [dm6]	G	A	3.090e^-4	0.931	INTRON CG9095
2L	14416814	2L_14416814_SNP [dm3] 2L_14416814_SNP [dm6]	A	G	3.095e^-4	0.931	UTR_3_PRIME Pburs
2L	14416818	2L_14416818_SNP [dm3] 2L_14416818_SNP [dm6]	T	C	3.095e^-4	0.931	UTR_3_PRIME Pburs
2R	17209151	2R_17209151_SNP [dm3] 2R_21321646_SNP [dm6]	A	C	3.099e^-4	0.931	SYNONYMOUS_CODING CG30394
3R	20115270	3R_20115270_SNP [dm3] 3R_24289548_SNP [dm6]	T	C	3.115e^-4	0.931	NON_SYNONYMOUS_CODING CG34290 UPSTREAM CG6364 DOWNSTREAM CG6356	TF binding site mE1_TFBS_HSA
2R	19364505	2R_19364505_SNP [dm3] 2R_23476982_SNP [dm6]	G	C	3.116e^-4	0.931	UPSTREAM CG13557 DOWNSTREAM CR43793 INTRON CG43795 EXON CR43792
2L	7748958	2L_7748958_SNP [dm3] 2L_7748958_SNP [dm6]	T	G	3.122e^-4	0.931	INTERGENIC
2L	22567482	2L_22567482_SNP [dm3] 2L_22674750_SNP [dm6]	A	T	3.139e^-4	0.931	INTRON CG40006
X	15049518	X_15049518_SNP [dm3] X_15155485_SNP [dm6]	G	A	3.145e^-4	0.931	INTRON CG9095
2R	19407188	2R_19407188_SNP [dm3] 2R_23519665_SNP [dm6]	G	A	3.157e^-4	0.931	DOWNSTREAM RabX1 INTERGENIC
3R	15177029	3R_15177029_SNP [dm3] 3R_19351307_SNP [dm6]	A	G	3.166e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17403208	3L_17403208_SNP [dm3] 3L_17410108_SNP [dm6]	A	G	3.181e^-4	0.931	INTRON blot
2L	2266818	2L_2266818_SNP [dm3] 2L_2266818_SNP [dm6]	A	G	3.196e^-4	0.931	INTERGENIC
3L	13320702	3L_13320702_SNP [dm3] 3L_13327602_SNP [dm6]	C	T	3.200e^-4	0.931	INTERGENIC
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	3.205e^-4	0.931	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16139287	3R_16139287_SNP [dm3] 3R_20313565_SNP [dm6]	A	T	3.218e^-4	0.931	INTRON CG42668
3L	23995369	3L_23995369_SNP [dm3] 3L_24002269_SNP [dm6]	T	A	3.220e^-4	0.931	INTERGENIC
3R	11097012	3R_11097012_SNP [dm3] 3R_15271290_SNP [dm6]	G	A	3.223e^-4	0.931	NON_SYNONYMOUS_CODING Cp190 DOWNSTREAM Zip88E	TF binding site mE1_TFBS_sens
2R	399831	2R_399831_INS [dm3] 2R_4512326_INS [dm6]	T	TATAGGTATAT...	3.233e^-4	0.931	INTERGENIC	transposable element FlyBase
2L	16471757	2L_16471757_SNP [dm3] 2L_16471757_SNP [dm6]	G	A	3.235e^-4	0.931	INTRON dac
3L	21143634	3L_21143634_SNP [dm3] 3L_21150534_SNP [dm6]	T	C	3.242e^-4	0.931	UTR_5_PRIME Ac78C INTRON Ac78C
X	19984750	X_19984750_SNP [dm3] X_20090717_SNP [dm6]	T	C	3.243e^-4	0.931	DOWNSTREAM fd19B EXON CR45628
2R	15965136	2R_15965136_SNP [dm3] 2R_20077631_SNP [dm6]	T	C	3.247e^-4	0.931	INTERGENIC
3L	6457509	3L_6457509_SNP [dm3] 3L_6464409_SNP [dm6]	T	C	3.257e^-4	0.931	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	13411570	3R_13411570_SNP [dm3] 3R_17585848_SNP [dm6]	C	T	3.260e^-4	0.931	INTERGENIC
3L	5237996	3L_5237996_SNP [dm3] 3L_5244896_SNP [dm6]	C	A	3.264e^-4	0.931	INTRON shep
2L	12209853	2L_12209853_SNP [dm3] 2L_12209853_SNP [dm6]	T	A	3.272e^-4	0.931	SYNONYMOUS_CODING CG31759 INTRON aret
2R	11362284	2R_11362284_SNP [dm3] 2R_15474779_SNP [dm6]	G	T	3.277e^-4	0.931	INTRON CG8180
3R	11501129	3R_11501129_SNP [dm3] 3R_15675407_SNP [dm6]	T	C	3.280e^-4	0.931	INTRON pxb
3L	17689210	3L_17689210_SNP [dm3] 3L_17696110_SNP [dm6]	G	T	3.292e^-4	0.931	INTRON Ccn
2L	4599176	2L_4599176_SNP [dm3] 2L_4599176_SNP [dm6]	G	T	3.295e^-4	0.931	INTRON dp	TF binding site mE1_TFBS_sbb
3L	10925904	3L_10925904_SNP [dm3] 3L_10932804_SNP [dm6]	G	C	3.298e^-4	0.931	INTERGENIC
2R	398847	2R_398847_DEL [dm3] 2R_4511342_DEL [dm6]	AACAA	A	3.300e^-4	0.931	INTERGENIC
3R	10544290	3R_10544290_SNP [dm3] 3R_14718568_SNP [dm6]	A	T	3.305e^-4	0.931	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21917574	2L_21917574_SNP [dm3] 2L_21917574_SNP [dm6]	A	T	3.308e^-4	0.931	DOWNSTREAM CG11634 INTRON CG11634
2L	6863560	2L_6863560_SNP [dm3] 2L_6863560_SNP [dm6]	G	C	3.322e^-4	0.931	INTRON Nha1
3L	18008941	3L_18008941_SNP [dm3] 3L_18015841_SNP [dm6]	T	A	3.322e^-4	0.931	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18008945	3L_18008945_DEL [dm3] 3L_18015845_DEL [dm6]	TGTAT	T	3.322e^-4	0.931	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17175292	2L_17175292_SNP [dm3] 2L_17175292_SNP [dm6]	A	T	3.324e^-4	0.931	UPSTREAM CR44394 INTERGENIC
2L	19688810	2L_19688810_SNP [dm3] 2L_19688810_SNP [dm6]	G	A	3.328e^-4	0.931	INTRON Lar	TF binding site BDTNP1_TFBS_twi
3L	5282775	3L_5282775_SNP [dm3] 3L_5289675_SNP [dm6]	A	G	3.336e^-4	0.931	INTERGENIC
3L	12820038	3L_12820038_SNP [dm3] 3L_12826938_SNP [dm6]	G	A	3.347e^-4	0.931	INTRON CG10960	TF binding site mE1_TFBS_cad
2L	13755069	2L_13755069_SNP [dm3] 2L_13755069_SNP [dm6]	G	A	3.356e^-4	0.931	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3L	5282807	3L_5282807_SNP [dm3] 3L_5289707_SNP [dm6]	C	T	3.357e^-4	0.931	INTERGENIC
3R	7096940	3R_7096940_INS [dm3] 3R_11271218_INS [dm6]	T	TGAACTTT	3.358e^-4	0.931	EXON CR31386
3L	4165191	3L_4165191_SNP [dm3] 3L_4165191_SNP [dm6]	A	T	3.363e^-4	0.931	INTRON mas
X	5702035	X_5702035_SNP [dm3] X_5808002_SNP [dm6]	A	T	3.363e^-4	0.931	UPSTREAM Prosbeta2R1 INTERGENIC
2L	10832550	2L_10832550_SNP [dm3] 2L_10832550_SNP [dm6]	A	G	3.398e^-4	0.931	INTRON Nos
3L	2824213	3L_2824213_SNP [dm3] 3L_2824213_SNP [dm6]	C	T	3.399e^-4	0.931	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12091373	X_12091373_DEL [dm3] X_12197340_DEL [dm6]	TT	G	3.407e^-4	0.931	INTRON Ten-a
3L	20566999	3L_20566999_SNP [dm3] 3L_20573899_SNP [dm6]	A	G	3.417e^-4	0.931	INTERGENIC
2R	19964927	2R_19964927_SNP [dm3] 2R_24077404_SNP [dm6]	G	T	3.430e^-4	0.931	DOWNSTREAM CG10339 INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5592751	2L_5592751_SNP [dm3] 2L_5592751_SNP [dm6]	C	T	3.436e^-4	0.931	INTERGENIC
2R	20843333	2R_20843333_SNP [dm3] 2R_24955810_SNP [dm6]	A	T	3.437e^-4	0.931	DOWNSTREAM CG12851 EXON CR44830	TF binding site mE1_TFBS_cad
3R	18856069	3R_18856069_SNP [dm3] 3R_23030347_SNP [dm6]	G	A	3.439e^-4	0.931	INTERGENIC
3R	13894369	3R_13894369_SNP [dm3] 3R_18068647_SNP [dm6]	C	G	3.442e^-4	0.931	INTERGENIC
2L	1130509	2L_1130509_SNP [dm3] 2L_1130509_SNP [dm6]	G	A	3.456e^-4	0.931	SYNONYMOUS_CODING CG4552	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5878622	X_5878622_SNP [dm3] X_5984589_SNP [dm6]	T	C	3.461e^-4	0.931	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
3R	10571659	3R_10571659_SNP [dm3] 3R_14745937_SNP [dm6]	A	G	3.464e^-4	0.931	UTR_3_PRIME smp-30 DOWNSTREAM smp-30 INTRON jvl
3R	26580440	3R_26580440_INS [dm3] 3R_30754718_INS [dm6]	C	ATAG	3.465e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	5071091	2L_5071091_SNP [dm3] 2L_5071091_SNP [dm6]	T	C	3.486e^-4	0.931	UTR_5_PRIME RpL37A DOWNSTREAM qtc INTRON RpL37A EXON CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	7761162	2R_7761162_SNP [dm3] 2R_11873657_SNP [dm6]	A	T	3.501e^-4	0.931	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_cad
2R	20158548	2R_20158548_SNP [dm3] 2R_24271025_SNP [dm6]	T	G	3.504e^-4	0.931	INTERGENIC
3R	22023053	3R_22023053_SNP [dm3] 3R_26197331_SNP [dm6]	A	C	3.507e^-4	0.931	INTRON CR44320
3R	26134311	3R_26134311_SNP [dm3] 3R_30308589_SNP [dm6]	A	T	3.509e^-4	0.931	INTRON hdc
3R	21023250	3R_21023250_SNP [dm3] 3R_25197528_SNP [dm6]	G	A	3.509e^-4	0.931	DOWNSTREAM CG13653 & 1 other INTERGENIC
2L	22523977	2L_22523977_SNP [dm3] 2L_22631245_SNP [dm6]	T	C	3.519e^-4	0.931	INTRON CG40006	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	15324877	3L_15324877_SNP [dm3] 3L_15331777_SNP [dm6]	T	C	3.520e^-4	0.931	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7018000	2R_7018000_SNP [dm3] 2R_11130495_SNP [dm6]	C	T	3.527e^-4	0.931	INTERGENIC
X	20208002	X_20208002_SNP [dm3] X_20336975_SNP [dm6]	A	G	3.532e^-4	0.931	INTERGENIC
2L	18766042	2L_18766042_SNP [dm3] 2L_18766042_SNP [dm6]	G	T	3.533e^-4	0.931	INTRON ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3638631	2L_3638631_SNP [dm3] 2L_3638631_SNP [dm6]	C	T	3.536e^-4	0.931	INTRON for
2L	7278863	2L_7278863_SNP [dm3] 2L_7278863_SNP [dm6]	T	A	3.539e^-4	0.931	INTERGENIC
2L	2067070	2L_2067070_SNP [dm3] 2L_2067070_SNP [dm6]	T	A	3.546e^-4	0.931	NON_SYNONYMOUS_CODING dpr3
3L	4233392	3L_4233392_SNP [dm3] 3L_4233392_SNP [dm6]	G	A	3.550e^-4	0.931	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8021372	3L_8021372_SNP [dm3] 3L_8028272_SNP [dm6]	G	A	3.558e^-4	0.931	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2L	7694673	2L_7694673_SNP [dm3] 2L_7694673_SNP [dm6]	C	T	3.562e^-4	0.931	SYNONYMOUS_CODING Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9943851	2R_9943851_SNP [dm3] 2R_14056346_SNP [dm6]	C	A	3.565e^-4	0.931	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14394602	3L_14394602_SNP [dm3] 3L_14401502_SNP [dm6]	G	T	3.579e^-4	0.931	SYNONYMOUS_CODING CG3868
2L	6757522	2L_6757522_SNP [dm3] 2L_6757522_SNP [dm6]	G	C	3.581e^-4	0.931	DOWNSTREAM CG11322 INTERGENIC
2L	3674447	2L_3674447_SNP [dm3] 2L_3674447_SNP [dm6]	G	T	3.584e^-4	0.931	INTRON CG34340
X	4972311	X_4972311_SNP [dm3] X_5078278_SNP [dm6]	G	A	3.593e^-4	0.931	SYNONYMOUS_CODING CG32767
3R	6461518	3R_6461518_SNP [dm3] 3R_10635796_SNP [dm6]	C	A	3.604e^-4	0.931	INTRON hth
2L	3872017	2L_3872017_DEL [dm3] 2L_3872017_DEL [dm6]	GGA	G	3.609e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10345529	2R_10345529_SNP [dm3] 2R_14458024_SNP [dm6]	G	A	3.617e^-4	0.931	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10795858	2R_10795858_SNP [dm3] 2R_14908353_SNP [dm6]	A	C	3.626e^-4	0.931	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	399804	2R_399804_DEL [dm3] 2R_4512299_DEL [dm6]	TCGTTTTTAACGTATGTAGT...	T	3.626e^-4	0.931	INTERGENIC	transposable element FlyBase
2L	19316364	2L_19316364_SNP [dm3] 2L_19316364_SNP [dm6]	A	C	3.628e^-4	0.931	INTERGENIC
X	3683316	X_3683316_SNP [dm3] X_3789283_SNP [dm6]	A	G	3.629e^-4	0.931	UTR_3_PRIME tlk UPSTREAM HIP-R DOWNSTREAM tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	13972140	2L_13972140_SNP [dm3] 2L_13972140_SNP [dm6]	C	A	3.636e^-4	0.931	UTR_3_PRIME NimB5 & 1 other DOWNSTREAM He & 1 other
3R	12910269	3R_12910269_SNP [dm3] 3R_17084547_SNP [dm6]	G	C	3.641e^-4	0.931	UTR_3_PRIME kuk UPSTREAM GckIII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14913768	2R_14913768_SNP [dm3] 2R_19026263_SNP [dm6]	T	C	3.641e^-4	0.931	INTRON 5-HT1B
X	3000151	X_3000151_SNP [dm3] X_3106118_SNP [dm6]	T	C	3.643e^-4	0.931	INTRON kirre
2R	15182423	2R_15182423_SNP [dm3] 2R_19294918_SNP [dm6]	G	C	3.653e^-4	0.931	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14492514	2R_14492514_DEL [dm3] 2R_18605009_DEL [dm6]	AA	G	3.654e^-4	0.931	INTRON GEFmeso
3R	13026845	3R_13026845_SNP [dm3] 3R_17201123_SNP [dm6]	G	C	3.654e^-4	0.931	INTRON Mur89F
3L	10974183	3L_10974183_SNP [dm3] 3L_10981083_SNP [dm6]	C	T	3.659e^-4	0.931	DOWNSTREAM klu INTERGENIC
2L	3236598	2L_3236598_SNP [dm3] 2L_3236598_SNP [dm6]	C	A	3.661e^-4	0.931	INTERGENIC
2L	2266830	2L_2266830_SNP [dm3] 2L_2266830_SNP [dm6]	T	C	3.663e^-4	0.931	INTERGENIC
3L	21618137	3L_21618137_SNP [dm3] 3L_21625037_SNP [dm6]	C	A	3.671e^-4	0.931	UPSTREAM CG11306 INTRON CG7166
3L	15131474	3L_15131474_SNP [dm3] 3L_15138374_SNP [dm6]	A	G	3.677e^-4	0.931	SYNONYMOUS_CODING Pdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15327224	2L_15327224_SNP [dm3] 2L_15327224_SNP [dm6]	T	A	3.683e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	19919808	3L_19919808_SNP [dm3] 3L_19926708_SNP [dm6]	G	A	3.686e^-4	0.931	SYNONYMOUS_CODING Grasp65 DOWNSTREAM CG8004	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18758942	3R_18758942_SNP [dm3] 3R_22933220_SNP [dm6]	T	A	3.694e^-4	0.931	INTRON klg
3R	18607517	3R_18607517_DEL [dm3] 3R_22781795_DEL [dm6]	ATA	A	3.700e^-4	0.931	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4119176	2L_4119176_SNP [dm3] 2L_4119176_SNP [dm6]	G	C	3.706e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8163625	X_8163625_SNP [dm3] X_8269592_SNP [dm6]	G	A	3.717e^-4	0.931	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
2R	19145987	2R_19145987_SNP [dm3] 2R_23258464_SNP [dm6]	G	A	3.724e^-4	0.931	INTERGENIC
3L	9219978	3L_9219978_SNP [dm3] 3L_9226878_SNP [dm6]	G	A	3.725e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11890341	X_11890341_SNP [dm3] X_11996308_SNP [dm6]	A	T	3.739e^-4	0.931	INTRON fw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18665040	3R_18665040_INS [dm3] 3R_22839318_INS [dm6]	G	TTAATAA	3.759e^-4	0.931	INTERGENIC
2R	9935382	2R_9935382_SNP [dm3] 2R_14047877_SNP [dm6]	C	T	3.759e^-4	0.931	INTRON mam
3L	12609065	3L_12609065_SNP [dm3] 3L_12615965_SNP [dm6]	A	G	3.762e^-4	0.931	INTRON caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7426261	2R_7426261_INS [dm3] 2R_11538756_INS [dm6]	T	TGGT	3.767e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4587468	X_4587468_SNP [dm3] X_4693435_SNP [dm6]	G	A	3.768e^-4	0.931	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	902429	3L_902429_SNP [dm3] 3L_902429_SNP [dm6]	A	T	3.769e^-4	0.931	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	15113995	X_15113995_SNP [dm3] X_15219962_SNP [dm6]	A	C	3.770e^-4	0.931	DOWNSTREAM CG43075 INTERGENIC
3R	18664693	3R_18664693_SNP [dm3] 3R_22838971_SNP [dm6]	A	G	3.771e^-4	0.931	INTERGENIC
X	8902867	X_8902867_SNP [dm3] X_9008834_SNP [dm6]	T	C	3.771e^-4	0.931	INTRON rdgA & 1 other
2L	22407613	2L_22407613_SNP [dm3] 2L_22407613_SNP [dm6]	T	G	3.775e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15026002	2L_15026002_SNP [dm3] 2L_15026002_SNP [dm6]	G	A	3.782e^-4	0.931	SYNONYMOUS_CODING GABA-B-R1 UPSTREAM CG33310	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16580622	2R_16580622_SNP [dm3] 2R_20693117_SNP [dm6]	G	T	3.789e^-4	0.931	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
2R	9547736	2R_9547736_SNP [dm3] 2R_13660231_SNP [dm6]	A	G	3.793e^-4	0.931	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	25640045	3R_25640045_SNP [dm3] 3R_29814323_SNP [dm6]	C	T	3.808e^-4	0.931	SYNONYMOUS_CODING ca DOWNSTREAM Vps16B	TF binding site mE1_TFBS_chinmo
3L	12039926	3L_12039926_SNP [dm3] 3L_12046826_SNP [dm6]	T	A	3.810e^-4	0.931	INTRON rols
2L	3872339	2L_3872339_SNP [dm3] 2L_3872339_SNP [dm6]	G	T	3.811e^-4	0.931	UTR_5_PRIME CG31957 DOWNSTREAM Cep97 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16886731	3L_16886731_SNP [dm3] 3L_16893631_SNP [dm6]	A	G	3.812e^-4	0.931	INTRON Lmpt
2L	10715248	2L_10715248_SNP [dm3] 2L_10715248_SNP [dm6]	T	C	3.812e^-4	0.931	INTERGENIC
3L	14951226	3L_14951226_SNP [dm3] 3L_14958126_SNP [dm6]	G	A	3.814e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	20863791	2R_20863791_SNP [dm3] 2R_24976268_SNP [dm6]	C	T	3.816e^-4	0.931	UPSTREAM CG2736 DOWNSTREAM emp & 1 other INTERGENIC
3L	5162056	3L_5162056_SNP [dm3] 3L_5168956_SNP [dm6]	A	T	3.827e^-4	0.931	INTRON shep	TF binding site mE1_TFBS_Kr
3R	20848788	3R_20848788_SNP [dm3] 3R_25023066_SNP [dm6]	G	T	3.836e^-4	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2R	12125705	2R_12125705_SNP [dm3] 2R_16238200_SNP [dm6]	T	C	3.854e^-4	0.931	UTR_3_PRIME krimp DOWNSTREAM CG3687
3R	10576319	3R_10576319_SNP [dm3] 3R_14750597_SNP [dm6]	C	A	3.861e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
X	2339192	X_2339192_SNP [dm3] X_2445159_SNP [dm6]	A	G	3.863e^-4	0.931	SYNONYMOUS_CODING boi
3L	23635423	3L_23635423_SNP [dm3] 3L_23642323_SNP [dm6]	T	A	3.867e^-4	0.931	INTRON AGO3	transposable element FlyBase
3L	23634613	3L_23634613_SNP [dm3] 3L_23641513_SNP [dm6]	A	T	3.867e^-4	0.931	INTRON AGO3	transposable element FlyBase
3R	26580432	3R_26580432_SNP [dm3] 3R_30754710_SNP [dm6]	T	C	3.894e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	9754921	X_9754921_SNP [dm3] X_9860888_SNP [dm6]	T	C	3.896e^-4	0.931	INTERGENIC
3L	4168097	3L_4168097_SNP [dm3] 3L_4168097_SNP [dm6]	G	A	3.899e^-4	0.931	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18715316	2R_18715316_SNP [dm3] 2R_22827793_SNP [dm6]	G	T	3.913e^-4	0.931	NON_SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2L	2275435	2L_2275435_SNP [dm3] 2L_2275435_SNP [dm6]	A	C	3.920e^-4	0.931	DOWNSTREAM CR43753 INTRON CR43753
X	8532863	X_8532863_SNP [dm3] X_8638830_SNP [dm6]	G	C	3.921e^-4	0.931	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3950761	X_3950761_SNP [dm3] X_4056728_SNP [dm6]	A	C	3.927e^-4	0.931	INTERGENIC
3R	9134147	3R_9134147_SNP [dm3] 3R_13308425_SNP [dm6]	C	T	3.935e^-4	0.931	UPSTREAM CG32473 INTRON CG32473
3R	9134149	3R_9134149_DEL [dm3] 3R_13308427_DEL [dm6]	CA	T	3.935e^-4	0.931	UPSTREAM CG32473 INTRON CG32473
3L	16696808	3L_16696808_DEL [dm3] 3L_16703708_DEL [dm6]	TT	T	3.939e^-4	0.931	INTRON Lasp & 1 other
3L	18334555	3L_18334555_SNP [dm3] 3L_18341455_SNP [dm6]	T	C	3.939e^-4	0.931	INTERGENIC
2L	7267921	2L_7267921_SNP [dm3] 2L_7267921_SNP [dm6]	T	C	3.942e^-4	0.931	INTRON Wnt4	TF binding site mE1_TFBS_cad
3L	14218325	3L_14218325_SNP [dm3] 3L_14225225_SNP [dm6]	T	G	3.957e^-4	0.931	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14785088	3L_14785088_SNP [dm3] 3L_14791988_SNP [dm6]	A	G	3.961e^-4	0.931	INTRON CG9425
2R	17847532	2R_17847532_SNP [dm3] 2R_21960027_SNP [dm6]	T	C	3.967e^-4	0.931	INTERGENIC
3R	7096875	3R_7096875_SNP [dm3] 3R_11271153_SNP [dm6]	G	T	3.968e^-4	0.931	EXON CR31386
2R	15904805	2R_15904805_SNP [dm3] 2R_20017300_SNP [dm6]	T	C	3.970e^-4	0.931	UPSTREAM CR44630 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3380237	2L_3380237_SNP [dm3] 2L_3380237_SNP [dm6]	G	T	3.971e^-4	0.931	INTERGENIC
2L	3461636	2L_3461636_SNP [dm3] 2L_3461636_SNP [dm6]	G	T	3.972e^-4	0.931	SYNONYMOUS_CODING CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19604748	3R_19604748_SNP [dm3] 3R_23779026_SNP [dm6]	G	A	3.983e^-4	0.931	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	19430449	X_19430449_SNP [dm3] X_19536416_SNP [dm6]	C	G	3.991e^-4	0.931	INTRON CG32532
2L	22474460	2L_22474460_SNP [dm3] 2L_22581728_SNP [dm6]	C	A	3.999e^-4	0.931	INTRON CG17494
2L	9028987	2L_9028987_SNP [dm3] 2L_9028987_SNP [dm6]	T	A	4.006e^-4	0.931	INTRON CG9582 & 1 other
2L	9029018	2L_9029018_SNP [dm3] 2L_9029018_SNP [dm6]	G	A	4.006e^-4	0.931	INTRON CG9582 & 1 other
2R	17958585	2R_17958585_SNP [dm3] 2R_22071080_SNP [dm6]	G	A	4.008e^-4	0.931	SYNONYMOUS_CODING CG11475 DOWNSTREAM CG11474
3R	22938720	3R_22938720_SNP [dm3] 3R_27112998_SNP [dm6]	A	G	4.012e^-4	0.931	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	27224262	3R_27224262_SNP [dm3] 3R_31398540_SNP [dm6]	C	T	4.013e^-4	0.931	SPLICE_SITE_REGION Gcn2 INTRON Gcn2
3R	15393689	3R_15393689_SNP [dm3] 3R_19567967_SNP [dm6]	C	G	4.014e^-4	0.931	INTRON Dys	TF binding site BDTNP1_TFBS_z
2R	14164763	2R_14164763_SNP [dm3] 2R_18277258_SNP [dm6]	G	A	4.019e^-4	0.931	UPSTREAM pen-2 & 1 other DOWNSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	18665004	3R_18665004_SNP [dm3] 3R_22839282_SNP [dm6]	T	C	4.022e^-4	0.931	INTERGENIC
3L	14951225	3L_14951225_SNP [dm3] 3L_14958125_SNP [dm6]	A	T	4.026e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	3231901	2L_3231901_SNP [dm3] 2L_3231901_SNP [dm6]	C	T	4.028e^-4	0.931	INTERGENIC
X	18043016	X_18043016_DEL [dm3] X_18148983_DEL [dm6]	CC	C	4.029e^-4	0.931	INTERGENIC
3L	12103556	3L_12103556_SNP [dm3] 3L_12110456_SNP [dm6]	C	T	4.032e^-4	0.931	INTERGENIC
3R	25953203	3R_25953203_SNP [dm3] 3R_30127481_SNP [dm6]	A	G	4.036e^-4	0.931	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6279495	2L_6279495_SNP [dm3] 2L_6279495_SNP [dm6]	G	A	4.039e^-4	0.931	INTRON Ddr	TF binding site mE1_TFBS_HSA
3R	19085928	3R_19085928_SNP [dm3] 3R_23260206_SNP [dm6]	C	A	4.049e^-4	0.931	DOWNSTREAM orb INTRON CG13827	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9385798	2R_9385798_SNP [dm3] 2R_13498293_SNP [dm6]	C	G	4.053e^-4	0.931	INTRON drk
3L	21215323	3L_21215323_SNP [dm3] 3L_21222223_SNP [dm6]	T	A	4.055e^-4	0.931	INTRON CG43219
3R	15487923	3R_15487923_SNP [dm3] 3R_19662201_SNP [dm6]	C	A	4.064e^-4	0.931	INTRON ort
3L	5282806	3L_5282806_SNP [dm3] 3L_5289706_SNP [dm6]	A	T	4.068e^-4	0.931	INTERGENIC
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	4.068e^-4	0.931	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	2258011	2L_2258011_SNP [dm3] 2L_2258011_SNP [dm6]	A	G	4.073e^-4	0.931	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8532859	X_8532859_INS [dm3] X_8638826_INS [dm6]	A	ATCCTTACTCCCTAATCCTT...	4.073e^-4	0.931	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18739133	2R_18739133_SNP [dm3] 2R_22851610_SNP [dm6]	T	G	4.078e^-4	0.931	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
2R	17209719	2R_17209719_SNP [dm3] 2R_21322214_SNP [dm6]	A	G	4.091e^-4	0.931	SPLICE_SITE_REGION CG30394 INTRON CG30394	TF binding site BDTNP1_TFBS_dl
2R	13143859	2R_13143859_SNP [dm3] 2R_17256354_SNP [dm6]	A	G	4.100e^-4	0.931	DOWNSTREAM CG43272 & 1 other INTRON mbl
3R	25512140	3R_25512140_SNP [dm3] 3R_29686418_SNP [dm6]	G	A	4.101e^-4	0.931	DOWNSTREAM Gycalpha99B INTRON Obp99c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10577235	3R_10577235_SNP [dm3] 3R_14751513_SNP [dm6]	C	G	4.105e^-4	0.931	UPSTREAM smp-30 DOWNSTREAM CG7362 INTRON jvl
2R	10217120	2R_10217120_SNP [dm3] 2R_14329615_SNP [dm6]	A	T	4.109e^-4	0.931	INTRON Shroom	TF binding site mE1_TFBS_chinmo
X	3662081	X_3662081_SNP [dm3] X_3768048_SNP [dm6]	A	G	4.117e^-4	0.931	INTRON tlk
2L	7438925	2L_7438925_SNP [dm3] 2L_7438925_SNP [dm6]	C	G	4.119e^-4	0.931	INTRON CG5973	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21363322	2L_21363322_SNP [dm3] 2L_21363322_SNP [dm6]	A	C	4.133e^-4	0.931	INTRON dtr
2R	14115401	2R_14115401_SNP [dm3] 2R_18227896_SNP [dm6]	A	T	4.140e^-4	0.931	EXON CR45310 & 1 other
X	9754750	X_9754750_DEL [dm3] X_9860717_DEL [dm6]	GCA	AG	4.143e^-4	0.931	INTERGENIC
X	5701437	X_5701437_SNP [dm3] X_5807404_SNP [dm6]	C	T	4.145e^-4	0.931	INTERGENIC
3L	5097272	3L_5097272_SNP [dm3] 3L_5097272_SNP [dm6]	T	C	4.147e^-4	0.931	INTERGENIC
3L	898059	3L_898059_SNP [dm3] 3L_898059_SNP [dm6]	G	A	4.150e^-4	0.931	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23528833	3L_23528833_SNP [dm3] 3L_23535733_SNP [dm6]	T	A	4.153e^-4	0.931	INTERGENIC
3L	8194830	3L_8194830_SNP [dm3] 3L_8201730_SNP [dm6]	G	A	4.154e^-4	0.931	SYNONYMOUS_CODING CG7366	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1281487	2L_1281487_SNP [dm3] 2L_1281487_SNP [dm6]	A	G	4.156e^-4	0.931	INTRON robo3
3R	15487985	3R_15487985_SNP [dm3] 3R_19662263_SNP [dm6]	T	A	4.172e^-4	0.931	INTRON ort
2R	12164427	2R_12164427_SNP [dm3] 2R_16276922_SNP [dm6]	A	T	4.177e^-4	0.931	NON_SYNONYMOUS_CODING CG33017 UTR_3_PRIME CG33017 DOWNSTREAM cato
3L	21073254	3L_21073254_SNP [dm3] 3L_21080154_SNP [dm6]	A	T	4.186e^-4	0.931	INTRON ko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19085839	3R_19085839_SNP [dm3] 3R_23260117_SNP [dm6]	T	C	4.191e^-4	0.931	SYNONYMOUS_CODING CG13827 DOWNSTREAM orb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	4.195e^-4	0.931	INTRON CG2082
3R	25952830	3R_25952830_SNP [dm3] 3R_30127108_SNP [dm6]	T	C	4.195e^-4	0.931	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1991055	2R_1991055_SNP [dm3] 2R_6103550_SNP [dm6]	A	T	4.197e^-4	0.931	INTRON EcR	TF binding site mE1_TFBS_Trl
3R	13582513	3R_13582513_SNP [dm3] 3R_17756791_SNP [dm6]	A	G	4.199e^-4	0.931	INTRON TyrR	TF binding site mE1_TFBS_chinmo
3R	10654083	3R_10654083_SNP [dm3] 3R_14828361_SNP [dm6]	A	C	4.204e^-4	0.931	INTRON btsz
3L	13526171	3L_13526171_SNP [dm3] 3L_13533071_SNP [dm6]	C	T	4.207e^-4	0.931	UTR_3_PRIME bru-3 DOWNSTREAM bru-3	TF binding site mE1_TFBS_HSA
2L	7748887	2L_7748887_SNP [dm3] 2L_7748887_SNP [dm6]	C	G	4.218e^-4	0.931	INTERGENIC
2R	6894047	2R_6894047_SNP [dm3] 2R_11006542_SNP [dm6]	A	G	4.228e^-4	0.931	INTRON luna
3R	25953104	3R_25953104_SNP [dm3] 3R_30127382_SNP [dm6]	A	T	4.237e^-4	0.931	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20914843	2R_20914843_SNP [dm3] 2R_25027320_SNP [dm6]	G	A	4.241e^-4	0.931	INTRON uzip
X	16220724	X_16220724_SNP [dm3] X_16326691_SNP [dm6]	C	G	4.242e^-4	0.931	DOWNSTREAM CG32579 INTRON CalpC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5890496	3L_5890496_DEL [dm3] 3L_5897396_DEL [dm6]	TT	T	4.260e^-4	0.931	UTR_5_PRIME Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5238006	3L_5238006_SNP [dm3] 3L_5244906_SNP [dm6]	C	T	4.260e^-4	0.931	INTRON shep
3L	15211034	3L_15211034_SNP [dm3] 3L_15217934_SNP [dm6]	G	A	4.261e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17664310	3R_17664310_SNP [dm3] 3R_21838588_SNP [dm6]	C	A	4.262e^-4	0.931	INTERGENIC
3L	8103575	3L_8103575_SNP [dm3] 3L_8110475_SNP [dm6]	A	G	4.276e^-4	0.931	START_GAINED CG7927 UTR_5_PRIME CG7927 UPSTREAM mir-2501 DOWNSTREAM fan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11872037	3L_11872037_SNP [dm3] 3L_11878937_SNP [dm6]	G	C	4.278e^-4	0.931	UPSTREAM CG14128 INTRON CG44837
3L	4170135	3L_4170135_SNP [dm3] 3L_4170135_SNP [dm6]	T	A	4.279e^-4	0.931	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	21917588	2L_21917588_SNP [dm3] 2L_21917588_SNP [dm6]	C	A	4.290e^-4	0.931	DOWNSTREAM CG11634 INTRON CG11634
2L	2266745	2L_2266745_SNP [dm3] 2L_2266745_SNP [dm6]	T	C	4.291e^-4	0.931	INTERGENIC
3L	13282829	3L_13282829_SNP [dm3] 3L_13289729_SNP [dm6]	T	G	4.292e^-4	0.931	DOWNSTREAM CR43912 INTERGENIC
X	16216546	X_16216546_SNP [dm3] X_16322513_SNP [dm6]	A	G	4.305e^-4	0.931	SYNONYMOUS_CODING CG9917 UPSTREAM CG32579	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	14160151	2L_14160151_SNP [dm3] 2L_14160151_SNP [dm6]	T	C	4.307e^-4	0.931	UTR_3_PRIME CG17341 DOWNSTREAM CG43332	TF binding site mE1_TFBS_run
3L	13239802	3L_13239802_DEL [dm3] 3L_13246702_DEL [dm6]	GC	G	4.308e^-4	0.931	DOWNSTREAM CG32119 INTRON caps
3R	21070951	3R_21070951_SNP [dm3] 3R_25245229_SNP [dm6]	T	C	4.313e^-4	0.931	UPSTREAM bam DOWNSTREAM RpS27 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6703384	2R_6703384_SNP [dm3] 2R_10815879_SNP [dm6]	G	A	4.325e^-4	0.931	DOWNSTREAM dgo & 1 other INTERGENIC
3L	9562006	3L_9562006_SNP [dm3] 3L_9568906_SNP [dm6]	G	A	4.329e^-4	0.931	INTRON CG42673
2L	1435021	2L_1435021_DEL [dm3] 2L_1435021_DEL [dm6]	CTC	G	4.335e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	7094573	3R_7094573_SNP [dm3] 3R_11268851_SNP [dm6]	G	A	4.339e^-4	0.931	DOWNSTREAM CR31386 INTERGENIC
2R	17848935	2R_17848935_SNP [dm3] 2R_21961430_SNP [dm6]	A	T	4.351e^-4	0.931	INTERGENIC
3L	4422015	3L_4422015_SNP [dm3] 3L_4422015_SNP [dm6]	G	C	4.355e^-4	0.931	UTR_5_PRIME CG15020
2R	17846692	2R_17846692_SNP [dm3] 2R_21959187_SNP [dm6]	G	C	4.367e^-4	0.931	INTERGENIC
X	8163698	X_8163698_SNP [dm3] X_8269665_SNP [dm6]	A	G	4.370e^-4	0.931	NON_SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	19459499	3R_19459499_SNP [dm3] 3R_23633777_SNP [dm6]	G	T	4.373e^-4	0.931	INTRON CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14158754	2L_14158754_SNP [dm3] 2L_14158754_SNP [dm6]	A	G	4.378e^-4	0.931	SYNONYMOUS_CODING CG17341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10530634	3R_10530634_SNP [dm3] 3R_14704912_SNP [dm6]	C	T	4.393e^-4	0.931	INTRON kibra
3L	4233402	3L_4233402_SNP [dm3] 3L_4233402_SNP [dm6]	A	T	4.396e^-4	0.931	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13574474	3R_13574474_SNP [dm3] 3R_17748752_SNP [dm6]	C	T	4.404e^-4	0.931	INTERGENIC
X	5877660	X_5877660_SNP [dm3] X_5983627_SNP [dm6]	C	A	4.407e^-4	0.931	INTRON Grip
3R	13020744	3R_13020744_SNP [dm3] 3R_17195022_SNP [dm6]	G	C	4.408e^-4	0.931	INTRON Mur89F
3R	17965772	3R_17965772_SNP [dm3] 3R_22140050_SNP [dm6]	G	C	4.410e^-4	0.931	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21018295	3L_21018295_SNP [dm3] 3L_21025195_SNP [dm6]	G	T	4.412e^-4	0.931	UTR_5_PRIME skd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	16413795	2R_16413795_SNP [dm3] 2R_20526290_SNP [dm6]	C	A	4.415e^-4	0.931	UPSTREAM CG13422 DOWNSTREAM CR44650 INTERGENIC
3L	5689418	3L_5689418_SNP [dm3] 3L_5696318_SNP [dm6]	T	C	4.419e^-4	0.931	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_chinmo
3R	7095105	3R_7095105_SNP [dm3] 3R_11269383_SNP [dm6]	A	G	4.425e^-4	0.931	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13250123	3R_13250123_SNP [dm3] 3R_17424401_SNP [dm6]	T	C	4.426e^-4	0.931	INTERGENIC
2L	14159823	2L_14159823_SNP [dm3] 2L_14159823_SNP [dm6]	C	T	4.429e^-4	0.931	UTR_3_PRIME CG17341
2L	12353527	2L_12353527_SNP [dm3] 2L_12353527_SNP [dm6]	G	A	4.434e^-4	0.931	INTRON bru-2
3R	27220401	3R_27220401_SNP [dm3] 3R_31394679_SNP [dm6]	A	G	4.464e^-4	0.931	SYNONYMOUS_CODING CG31002 UPSTREAM Gcn2
3R	18435238	3R_18435238_SNP [dm3] 3R_22609516_SNP [dm6]	A	T	4.465e^-4	0.931	START_GAINED CG13843 UTR_5_PRIME CG13843 DOWNSTREAM Efa6 INTRON CG31156	TF binding site mE1_TFBS_inv
2L	6281431	2L_6281431_SNP [dm3] 2L_6281431_SNP [dm6]	A	C	4.467e^-4	0.931	INTRON Ddr
3L	20885382	3L_20885382_SNP [dm3] 3L_20892282_SNP [dm6]	G	A	4.474e^-4	0.931	INTERGENIC
2R	10193655	2R_10193655_SNP [dm3] 2R_14306150_SNP [dm6]	T	A	4.475e^-4	0.931	INTERGENIC
2L	2266689	2L_2266689_SNP [dm3] 2L_2266689_SNP [dm6]	T	A	4.477e^-4	0.931	INTERGENIC
X	5263427	X_5263427_SNP [dm3] X_5369394_SNP [dm6]	T	C	4.478e^-4	0.931	INTRON SK
2L	12210129	2L_12210129_SNP [dm3] 2L_12210129_SNP [dm6]	T	G	4.479e^-4	0.931	DOWNSTREAM CG31759 INTRON aret
2R	9611358	2R_9611358_SNP [dm3] 2R_13723853_SNP [dm6]	T	C	4.484e^-4	0.931	INTRON fas
X	20944373	X_20944373_SNP [dm3] X_21073346_SNP [dm6]	A	G	4.489e^-4	0.931	INTRON bves
2L	7776616	2L_7776616_SNP [dm3] 2L_7776616_SNP [dm6]	C	T	4.495e^-4	0.931	NON_SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23522336	3R_23522336_SNP [dm3] 3R_27696614_SNP [dm6]	C	T	4.496e^-4	0.931	UTR_3_PRIME ALiX DOWNSTREAM CG43320
3R	26580430	3R_26580430_SNP [dm3] 3R_30754708_SNP [dm6]	T	G	4.496e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13143878	2R_13143878_SNP [dm3] 2R_17256373_SNP [dm6]	A	T	4.497e^-4	0.931	DOWNSTREAM CG43272 & 1 other INTRON mbl
2R	8893423	2R_8893423_SNP [dm3] 2R_13005918_SNP [dm6]	A	T	4.500e^-4	0.931	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21048622	X_21048622_SNP [dm3] X_21177595_SNP [dm6]	A	G	4.504e^-4	0.931	INTERGENIC	transposable element FlyBase
3L	15747313	3L_15747313_SNP [dm3] 3L_15754213_SNP [dm6]	A	G	4.505e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24466202	3R_24466202_SNP [dm3] 3R_28640480_SNP [dm6]	A	G	4.514e^-4	0.931	INTERGENIC
2L	3889404	2L_3889404_SNP [dm3] 2L_3889404_SNP [dm6]	T	C	4.527e^-4	0.931	UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6967320	2R_6967320_SNP [dm3] 2R_11079815_SNP [dm6]	T	C	4.530e^-4	0.931	INTRON luna
2R	11850461	2R_11850461_SNP [dm3] 2R_15962956_SNP [dm6]	T	A	4.537e^-4	0.931	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	26558466	3R_26558466_SNP [dm3] 3R_30732744_SNP [dm6]	G	A	4.540e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17270652	2L_17270652_SNP [dm3] 2L_17270652_SNP [dm6]	T	G	4.543e^-4	0.931	INTERGENIC
3L	4692436	3L_4692436_SNP [dm3] 3L_4692436_SNP [dm6]	G	T	4.548e^-4	0.931	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11444395	3R_11444395_SNP [dm3] 3R_15618673_SNP [dm6]	C	T	4.561e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	23760593	3L_23760593_SNP [dm3] 3L_23767493_SNP [dm6]	A	C	4.564e^-4	0.931	INTERGENIC	transposable element FlyBase
2L	22126228	2L_22126228_DEL [dm3] 2L_22126228_DEL [dm6]	AGAA	A	4.565e^-4	0.931	UTR_3_PRIME CycK & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12515640	3R_12515640_SNP [dm3] 3R_16689918_SNP [dm6]	G	A	4.569e^-4	0.931	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3872046	2L_3872046_SNP [dm3] 2L_3872046_SNP [dm6]	G	A	4.583e^-4	0.931	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	7094892	3R_7094892_SNP [dm3] 3R_11269170_SNP [dm6]	A	T	4.587e^-4	0.931	DOWNSTREAM CR31386 INTERGENIC
2R	9494414	2R_9494414_INS [dm3] 2R_13606909_INS [dm6]	A	AA	4.588e^-4	0.931	INTERGENIC
2L	22429757	2L_22429757_SNP [dm3] 2L_22537025_SNP [dm6]	T	G	4.591e^-4	0.931	UPSTREAM RpL5 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	4214551	3L_4214551_SNP [dm3] 3L_4214551_SNP [dm6]	C	T	4.592e^-4	0.931	UPSTREAM Cpr64Ad INTRON CG43367
3R	23852876	3R_23852876_SNP [dm3] 3R_28027154_SNP [dm6]	G	C	4.599e^-4	0.931	INTRON CG34362
3R	13813148	3R_13813148_SNP [dm3] 3R_17987426_SNP [dm6]	T	A	4.599e^-4	0.931	INTRON cpo
2L	2271389	2L_2271389_SNP [dm3] 2L_2271389_SNP [dm6]	T	C	4.604e^-4	0.931	EXON CR43753
2R	15967795	2R_15967795_SNP [dm3] 2R_20080290_SNP [dm6]	G	C	4.611e^-4	0.931	INTERGENIC
3L	9509069	3L_9509069_SNP [dm3] 3L_9515969_SNP [dm6]	A	C	4.621e^-4	0.931	INTRON CG33700
3R	16139412	3R_16139412_SNP [dm3] 3R_20313690_SNP [dm6]	A	T	4.622e^-4	0.931	INTRON CG42668
2R	18331619	2R_18331619_SNP [dm3] 2R_22444114_SNP [dm6]	A	G	4.624e^-4	0.931	INTERGENIC
2L	9666376	2L_9666376_SNP [dm3] 2L_9666376_SNP [dm6]	A	G	4.626e^-4	0.931	INTERGENIC
3L	15747307	3L_15747307_SNP [dm3] 3L_15754207_SNP [dm6]	T	G	4.631e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	902175	2L_902175_SNP [dm3] 2L_902175_SNP [dm6]	G	A	4.646e^-4	0.931	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6315691	3L_6315691_SNP [dm3] 3L_6322591_SNP [dm6]	G	A	4.648e^-4	0.931	DOWNSTREAM Or65a INTERGENIC
3R	25640043	3R_25640043_SNP [dm3] 3R_29814321_SNP [dm6]	C	A	4.658e^-4	0.931	NON_SYNONYMOUS_CODING ca DOWNSTREAM Vps16B	TF binding site mE1_TFBS_chinmo
2L	3457820	2L_3457820_SNP [dm3] 2L_3457820_SNP [dm6]	G	A	4.664e^-4	0.931	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5458259	2L_5458259_SNP [dm3] 2L_5458259_SNP [dm6]	G	A	4.671e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	673722	3L_673722_SNP [dm3] 3L_673722_SNP [dm6]	C	T	4.676e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	2077693	2L_2077693_SNP [dm3] 2L_2077693_SNP [dm6]	A	T	4.681e^-4	0.931	INTRON dpr3
3R	19736405	3R_19736405_SNP [dm3] 3R_23910683_SNP [dm6]	A	T	4.681e^-4	0.931	INTRON sba
2R	8258381	2R_8258381_SNP [dm3] 2R_12370876_SNP [dm6]	T	C	4.684e^-4	0.931	UTR_3_PRIME CG33012 UPSTREAM CG13160
2R	6226767	2R_6226767_SNP [dm3] 2R_10339262_SNP [dm6]	C	G	4.693e^-4	0.931	INTRON CG42732
X	13061662	X_13061662_SNP [dm3] X_13167629_SNP [dm6]	T	A	4.700e^-4	0.931	SYNONYMOUS_CODING CG34411
2L	2252031	2L_2252031_SNP [dm3] 2L_2252031_SNP [dm6]	T	C	4.704e^-4	0.931	SYNONYMOUS_CODING CG17239 UPSTREAM Ser12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17081885	2R_17081885_SNP [dm3] 2R_21194380_SNP [dm6]	G	A	4.710e^-4	0.931	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	5208981	3R_5208981_SNP [dm3] 3R_9383259_SNP [dm6]	A	G	4.723e^-4	0.931	INTRON FER
X	21048611	X_21048611_SNP [dm3] X_21177584_SNP [dm6]	A	T	4.742e^-4	0.931	INTERGENIC	transposable element FlyBase
2R	18914446	2R_18914446_SNP [dm3] 2R_23026923_SNP [dm6]	A	G	4.750e^-4	0.931	INTRON twi & 1 other
2R	9045850	2R_9045850_SNP [dm3] 2R_13158345_SNP [dm6]	C	G	4.754e^-4	0.931	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	4.755e^-4	0.931	INTRON CG33144
3L	4691911	3L_4691911_SNP [dm3] 3L_4691911_SNP [dm6]	A	G	4.765e^-4	0.931	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	11120988	3R_11120988_SNP [dm3] 3R_15295266_SNP [dm6]	C	A	4.774e^-4	0.931	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1
3R	11120990	3R_11120990_SNP [dm3] 3R_15295268_SNP [dm6]	A	T	4.774e^-4	0.931	SYNONYMOUS_CODING Tm1 INTRON Tm1
2R	18597197	2R_18597197_SNP [dm3] 2R_22709692_SNP [dm6]	G	T	4.787e^-4	0.931	INTRON CG30275
2L	1132733	2L_1132733_SNP [dm3] 2L_1132733_SNP [dm6]	C	A	4.792e^-4	0.931	SYNONYMOUS_CODING Iris DOWNSTREAM CG4552
3R	18479550	3R_18479550_SNP [dm3] 3R_22653828_SNP [dm6]	C	A	4.792e^-4	0.931	INTRON CG45058
2R	9937154	2R_9937154_SNP [dm3] 2R_14049649_SNP [dm6]	C	T	4.792e^-4	0.931	INTRON mam	TF binding site BDTNP1_TFBS_prd
2R	5714209	2R_5714209_SNP [dm3] 2R_9826704_SNP [dm6]	G	T	4.793e^-4	0.931	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16715699	3L_16715699_SNP [dm3] 3L_16722599_SNP [dm6]	C	T	4.805e^-4	0.931	NON_SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18869380	3L_18869380_SNP [dm3] 3L_18876280_SNP [dm6]	C	T	4.815e^-4	0.931	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3L	18869445	3L_18869445_SNP [dm3] 3L_18876345_SNP [dm6]	G	T	4.815e^-4	0.931	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17401319	3L_17401319_SNP [dm3] 3L_17408219_SNP [dm6]	A	G	4.822e^-4	0.931	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	18362966	X_18362966_SNP [dm3] X_18468933_SNP [dm6]	A	T	4.824e^-4	0.931	INTRON CG32547
2R	6443706	2R_6443706_INS [dm3] 2R_10556201_INS [dm6]	A	AC	4.830e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14763089	3L_14763089_SNP [dm3] 3L_14769989_SNP [dm6]	C	G	4.836e^-4	0.931	UPSTREAM CG17173 INTRON mop
X	6638982	X_6638982_SNP [dm3] X_6744949_SNP [dm6]	A	G	4.837e^-4	0.931	UPSTREAM RpL17 & 1 other INTRON CR44895
2R	13143889	2R_13143889_SNP [dm3] 2R_17256384_SNP [dm6]	A	G	4.839e^-4	0.931	DOWNSTREAM CG43272 & 1 other INTRON mbl
3L	14938431	3L_14938431_SNP [dm3] 3L_14945331_SNP [dm6]	A	C	4.840e^-4	0.931	UPSTREAM CG13465 DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	22554759	2L_22554759_SNP [dm3] 2L_22662027_SNP [dm6]	C	T	4.840e^-4	0.931	INTRON CG40006
3L	12381148	3L_12381148_SNP [dm3] 3L_12388048_SNP [dm6]	G	T	4.842e^-4	0.931	UPSTREAM Ncc69 INTRON Ncc69
3L	9294030	3L_9294030_SNP [dm3] 3L_9300930_SNP [dm6]	T	C	4.851e^-4	0.931	INTERGENIC
3L	18052499	3L_18052499_SNP [dm3] 3L_18059399_SNP [dm6]	G	C	4.853e^-4	0.931	NON_SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1139875	3L_1139875_SNP [dm3] 3L_1139875_SNP [dm6]	C	G	4.866e^-4	0.931	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15525913	3L_15525913_SNP [dm3] 3L_15532813_SNP [dm6]	T	C	4.868e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16873948	3L_16873948_DEL [dm3] 3L_16880848_DEL [dm6]	TT	T	4.873e^-4	0.931	INTRON Lmpt
3R	7096892	3R_7096892_SNP [dm3] 3R_11271170_SNP [dm6]	A	T	4.880e^-4	0.931	EXON CR31386
X	16862378	X_16862378_SNP [dm3] X_16968345_SNP [dm6]	C	T	4.882e^-4	0.931	DOWNSTREAM CG45002 INTRON CG9086	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20284943	2L_20284943_SNP [dm3] 2L_20284943_SNP [dm6]	C	G	4.884e^-4	0.931	INTERGENIC
X	6488363	X_6488363_SNP [dm3] X_6594330_SNP [dm6]	G	C	4.886e^-4	0.931	INTRON Pat1
2R	18206172	2R_18206172_SNP [dm3] 2R_22318667_SNP [dm6]	T	G	4.887e^-4	0.931	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17575723	2R_17575723_SNP [dm3] 2R_21688218_SNP [dm6]	G	A	4.890e^-4	0.931	SYNONYMOUS_CODING CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	17978802	3L_17978802_SNP [dm3] 3L_17985702_SNP [dm6]	A	G	4.892e^-4	0.931	INTRON Eip75B
2R	18332702	2R_18332702_SNP [dm3] 2R_22445197_SNP [dm6]	T	C	4.899e^-4	0.931	INTERGENIC
2L	22451878	2L_22451878_SNP [dm3] 2L_22559146_SNP [dm6]	G	A	4.916e^-4	0.931	INTERGENIC
2L	22485316	2L_22485316_SNP [dm3] 2L_22592584_SNP [dm6]	G	T	4.916e^-4	0.931	INTERGENIC
2L	22569499	2L_22569499_SNP [dm3] 2L_22676767_SNP [dm6]	C	T	4.916e^-4	0.931	INTRON CG40006
2L	4448309	2L_4448309_SNP [dm3] 2L_4448309_SNP [dm6]	A	G	4.926e^-4	0.931	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12065697	3L_12065697_SNP [dm3] 3L_12072597_SNP [dm6]	G	A	4.934e^-4	0.931	INTRON Sema-5c
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	4.955e^-4	0.931	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	17015713	2L_17015713_SNP [dm3] 2L_17015713_SNP [dm6]	T	C	4.957e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17399770	3L_17399770_SNP [dm3] 3L_17406670_SNP [dm6]	T	G	4.961e^-4	0.931	UPSTREAM blot INTRON blot
2R	18553488	2R_18553488_SNP [dm3] 2R_22665983_SNP [dm6]	G	C	4.963e^-4	0.931	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2L	7628595	2L_7628595_DEL [dm3] 2L_7628595_DEL [dm6]	AT	C	4.980e^-4	0.931	INTERGENIC
2R	18164788	2R_18164788_INS [dm3] 2R_22277283_INS [dm6]	G	AT	4.980e^-4	0.931	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10576351	3R_10576351_SNP [dm3] 3R_14750629_SNP [dm6]	T	A	4.987e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	18080327	2L_18080327_SNP [dm3] 2L_18080327_SNP [dm6]	C	T	4.988e^-4	0.931	UTR_3_PRIME Arr1
2R	10480237	2R_10480237_SNP [dm3] 2R_14592732_SNP [dm6]	G	T	4.989e^-4	0.931	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
3L	14951319	3L_14951319_SNP [dm3] 3L_14958219_SNP [dm6]	T	C	4.993e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	2660871	X_2660871_SNP [dm3] X_2766838_SNP [dm6]	A	T	5.004e^-4	0.931	INTRON kirre
3L	14975969	3L_14975969_SNP [dm3] 3L_14982869_SNP [dm6]	A	G	5.010e^-4	0.931	UTR_5_PRIME CG5114 DOWNSTREAM CG3349	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	903066	3L_903066_SNP [dm3] 3L_903066_SNP [dm6]	G	A	5.020e^-4	0.931	NON_SYNONYMOUS_CODING CG13905	TF binding site mE1_TFBS_sens
X	5701408	X_5701408_SNP [dm3] X_5807375_SNP [dm6]	A	C	5.025e^-4	0.931	INTERGENIC
3L	14951217	3L_14951217_SNP [dm3] 3L_14958117_SNP [dm6]	G	A	5.029e^-4	0.931	INTERGENIC
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	5.033e^-4	0.931	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	18743554	3R_18743554_SNP [dm3] 3R_22917832_SNP [dm6]	C	T	5.035e^-4	0.931	INTRON klg
2R	20158698	2R_20158698_SNP [dm3] 2R_24271175_SNP [dm6]	G	C	5.048e^-4	0.931	INTERGENIC
3L	14938254	3L_14938254_SNP [dm3] 3L_14945154_SNP [dm6]	G	A	5.049e^-4	0.931	UPSTREAM CG13465 DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5282982	3L_5282982_SNP [dm3] 3L_5289882_SNP [dm6]	T	C	5.055e^-4	0.931	INTERGENIC
2L	2266654	2L_2266654_SNP [dm3] 2L_2266654_SNP [dm6]	T	C	5.063e^-4	0.931	INTERGENIC
3L	898062	3L_898062_SNP [dm3] 3L_898062_SNP [dm6]	T	C	5.073e^-4	0.931	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12465284	3R_12465284_SNP [dm3] 3R_16639562_SNP [dm6]	G	A	5.079e^-4	0.931	UTR_3_PRIME Fas1 UPSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl
2R	8939940	2R_8939940_SNP [dm3] 2R_13052435_SNP [dm6]	G	C	5.082e^-4	0.931	INTERGENIC
2R	18793983	2R_18793983_SNP [dm3] 2R_22906460_SNP [dm6]	G	A	5.090e^-4	0.931	INTRON nahoda
2R	6993044	2R_6993044_DEL [dm3] 2R_11105539_DEL [dm6]	TT	T	5.098e^-4	0.931	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4166646	3L_4166646_SNP [dm3] 3L_4166646_SNP [dm6]	G	A	5.105e^-4	0.931	INTRON mas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	16308294	2R_16308294_SNP [dm3] 2R_20420789_SNP [dm6]	A	T	5.117e^-4	0.931	INTERGENIC
3R	9611520	3R_9611520_SNP [dm3] 3R_13785798_SNP [dm6]	T	G	5.126e^-4	0.931	DOWNSTREAM CR45590 & 1 other INTERGENIC
3L	7891141	3L_7891141_SNP [dm3] 3L_7898041_SNP [dm6]	G	A	5.128e^-4	0.931	SYNONYMOUS_CODING pbl
3L	2824516	3L_2824516_SNP [dm3] 3L_2824516_SNP [dm6]	C	T	5.134e^-4	0.931	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16742406	3L_16742406_SNP [dm3] 3L_16749306_SNP [dm6]	G	A	5.148e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22312685	3R_22312685_SNP [dm3] 3R_26486963_SNP [dm6]	G	A	5.158e^-4	0.931	INTRON plum
3L	16035306	3L_16035306_SNP [dm3] 3L_16042206_SNP [dm6]	C	T	5.160e^-4	0.931	INTRON th	TF binding site BDTNP1_TFBS_dl
3R	16731462	3R_16731462_SNP [dm3] 3R_20905740_SNP [dm6]	C	A	5.163e^-4	0.931	UPSTREAM TotX INTRON CG5621
2R	18590139	2R_18590139_INS [dm3] 2R_22702634_INS [dm6]	C	CC	5.163e^-4	0.931	UPSTREAM Obp59a INTRON CG30259
2L	21884166	2L_21884166_SNP [dm3] 2L_21884166_SNP [dm6]	G	A	5.165e^-4	0.931	INTERGENIC
2L	13745574	2L_13745574_SNP [dm3] 2L_13745574_SNP [dm6]	A	G	5.173e^-4	0.931	INTERGENIC
2R	13335028	2R_13335028_SNP [dm3] 2R_17447523_SNP [dm6]	G	A	5.183e^-4	0.931	UPSTREAM mthl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5344504	2R_5344504_SNP [dm3] 2R_9456999_SNP [dm6]	T	G	5.196e^-4	0.931	UPSTREAM Camta INTRON Camta	TF binding site mE1_TFBS_cad
3L	2385508	3L_2385508_INS [dm3] 3L_2385508_INS [dm6]	C	CACC	5.200e^-4	0.931	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2325690	2L_2325690_SNP [dm3] 2L_2325690_SNP [dm6]	G	C	5.209e^-4	0.931	INTRON CG9967 & 1 other
3R	10576300	3R_10576300_DEL [dm3] 3R_14750578_DEL [dm6]	TACCATAAAAAC...	T	5.209e^-4	0.931	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
3L	14106779	3L_14106779_SNP [dm3] 3L_14113679_SNP [dm6]	C	T	5.228e^-4	0.931	INTRON Sox21b
3R	16479675	3R_16479675_SNP [dm3] 3R_20653953_SNP [dm6]	A	G	5.229e^-4	0.931	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
2R	20130367	2R_20130367_SNP [dm3] 2R_24242844_SNP [dm6]	C	T	5.231e^-4	0.931	UPSTREAM nord INTERGENIC
2R	16563530	2R_16563530_SNP [dm3] 2R_20676025_SNP [dm6]	A	T	5.241e^-4	0.931	INTERGENIC
3R	18665042	3R_18665042_SNP [dm3] 3R_22839320_SNP [dm6]	T	G	5.250e^-4	0.931	INTERGENIC
2L	5811596	2L_5811596_SNP [dm3] 2L_5811596_SNP [dm6]	C	T	5.251e^-4	0.931	NON_SYNONYMOUS_CODING CG43307 DOWNSTREAM CR44576
X	9473980	X_9473980_DEL [dm3] X_9579947_DEL [dm6]	GT	G	5.254e^-4	0.931	UTR_5_PRIME CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12147612	3L_12147612_SNP [dm3] 3L_12154512_SNP [dm6]	C	A	5.254e^-4	0.931	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3L	23522602	3L_23522602_SNP [dm3] 3L_23529502_SNP [dm6]	T	A	5.269e^-4	0.931	INTERGENIC	transposable element FlyBase
2L	12021530	2L_12021530_SNP [dm3] 2L_12021530_SNP [dm6]	G	A	5.278e^-4	0.931	UPSTREAM CG6734 INTERGENIC
2L	7491822	2L_7491822_SNP [dm3] 2L_7491822_SNP [dm6]	G	T	5.279e^-4	0.931	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7493343	2L_7493343_SNP [dm3] 2L_7493343_SNP [dm6]	G	A	5.297e^-4	0.931	INTRON Ziz
3R	23522392	3R_23522392_SNP [dm3] 3R_27696670_SNP [dm6]	G	A	5.303e^-4	0.931	UTR_3_PRIME ALiX DOWNSTREAM CG43320
X	16288323	X_16288323_SNP [dm3] X_16394290_SNP [dm6]	C	A	5.310e^-4	0.931	INTRON mei-41
3L	6457510	3L_6457510_SNP [dm3] 3L_6464410_SNP [dm6]	T	G	5.312e^-4	0.931	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	25951875	3R_25951875_SNP [dm3] 3R_30126153_SNP [dm6]	G	A	5.313e^-4	0.931	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
2R	7076911	2R_7076911_SNP [dm3] 2R_11189406_SNP [dm6]	C	T	5.318e^-4	0.931	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	2258020	2L_2258020_SNP [dm3] 2L_2258020_SNP [dm6]	A	T	5.331e^-4	0.931	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26933068	3R_26933068_SNP [dm3] 3R_31107346_SNP [dm6]	A	G	5.331e^-4	0.931	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8647604	X_8647604_SNP [dm3] X_8753571_SNP [dm6]	T	A	5.334e^-4	0.931	INTERGENIC
3L	9509075	3L_9509075_SNP [dm3] 3L_9515975_SNP [dm6]	A	T	5.334e^-4	0.931	INTRON CG33700
2L	22466377	2L_22466377_SNP [dm3] 2L_22573645_SNP [dm6]	G	T	5.340e^-4	0.931	INTERGENIC
2L	7768840	2L_7768840_SNP [dm3] 2L_7768840_SNP [dm6]	C	A	5.345e^-4	0.931	INTRON CG7191
X	15578008	X_15578008_SNP [dm3] X_15683975_SNP [dm6]	C	T	5.348e^-4	0.931	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2330128	X_2330128_SNP [dm3] X_2436095_SNP [dm6]	C	G	5.350e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	5980001	2R_5980001_SNP [dm3] 2R_10092496_SNP [dm6]	C	G	5.359e^-4	0.931	INTRON CG2269
X	5053155	X_5053155_SNP [dm3] X_5159122_SNP [dm6]	A	T	5.360e^-4	0.931	INTRON rg & 1 other
2R	19307399	2R_19307399_SNP [dm3] 2R_23419876_SNP [dm6]	A	G	5.366e^-4	0.931	UPSTREAM CG9812 INTERGENIC
2R	5699745	2R_5699745_SNP [dm3] 2R_9812240_SNP [dm6]	A	T	5.390e^-4	0.931	INTRON CG1648

By genomic position
Variant impact
Gene name

mn_Weight_HighDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results