DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.580e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	4.6579	0.0974
In_2R_NS	5.2075	0.074
In_3R_Mo	4.9854	0.0827

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2041 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	10652408	3R_10652408_SNP [dm3] 3R_14826686_SNP [dm6]	C	T	2.543e^-7	0.477	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5877626	X_5877626_SNP [dm3] X_5983593_SNP [dm6]	C	T	1.324e^-6	0.71	INTRON Grip
3L	4692539	3L_4692539_SNP [dm3] 3L_4692539_SNP [dm6]	T	C	2.118e^-6	0.71	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11357121	3L_11357121_SNP [dm3] 3L_11364021_SNP [dm6]	G	T	2.120e^-6	0.71	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
X	16220389	X_16220389_SNP [dm3] X_16326356_SNP [dm6]	A	G	2.271e^-6	0.71	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9965586	2R_9965586_SNP [dm3] 2R_14078081_SNP [dm6]	T	C	3.124e^-6	0.71	INTRON Prosap
3R	25953010	3R_25953010_SNP [dm3] 3R_30127288_SNP [dm6]	A	G	3.720e^-6	0.71	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4692512	3L_4692512_SNP [dm3] 3L_4692512_SNP [dm6]	T	C	3.804e^-6	0.71	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18704014	2R_18704014_SNP [dm3] 2R_22816509_SNP [dm6]	C	G	3.828e^-6	0.71	UTR_5_PRIME CG30271 UPSTREAM CG30271 DOWNSTREAM stl
3R	10658898	3R_10658898_SNP [dm3] 3R_14833176_SNP [dm6]	C	T	4.025e^-6	0.71	INTRON btsz
3R	13180985	3R_13180985_DEL [dm3] 3R_17355263_DEL [dm6]	TTGT	T	4.755e^-6	0.71	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3R	11217493	3R_11217493_SNP [dm3] 3R_15391771_SNP [dm6]	C	T	4.815e^-6	0.71	INTRON Rbp	TF binding site mE1_TFBS_cad
3R	25953104	3R_25953104_SNP [dm3] 3R_30127382_SNP [dm6]	A	T	5.390e^-6	0.71	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1139878	3L_1139878_SNP [dm3] 3L_1139878_SNP [dm6]	T	G	5.425e^-6	0.71	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1139881	3L_1139881_SNP [dm3] 3L_1139881_SNP [dm6]	G	C	6.329e^-6	0.71	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17965732	3R_17965732_SNP [dm3] 3R_22140010_SNP [dm6]	C	A	6.665e^-6	0.71	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23268180	3R_23268180_SNP [dm3] 3R_27442458_SNP [dm6]	T	A	6.880e^-6	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	11357109	3L_11357109_INS [dm3] 3L_11364009_INS [dm6]	A	ACAA	7.067e^-6	0.71	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
3R	25953203	3R_25953203_SNP [dm3] 3R_30127481_SNP [dm6]	A	G	7.198e^-6	0.71	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4692547	3L_4692547_INS [dm3] 3L_4692547_INS [dm6]	G	GC	7.895e^-6	0.74	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25952830	3R_25952830_SNP [dm3] 3R_30127108_SNP [dm6]	T	C	8.587e^-6	0.766	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	9.205e^-6	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	13722301	3R_13722301_SNP [dm3] 3R_17896579_SNP [dm6]	T	A	9.426e^-6	0.768	INTRON Rim
3R	10359904	3R_10359904_SNP [dm3] 3R_14534182_SNP [dm6]	G	A	1.065e^-5	0.818	INTRON Pde6
3R	25952966	3R_25952966_SNP [dm3] 3R_30127244_SNP [dm6]	T	C	1.172e^-5	0.818	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17683579	3R_17683579_SNP [dm3] 3R_21857857_SNP [dm6]	A	G	1.178e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	14175484	3R_14175484_SNP [dm3] 3R_18349762_SNP [dm6]	T	C	1.278e^-5	0.818	INTRON CG15803
X	19206708	X_19206708_SNP [dm3] X_19312675_SNP [dm6]	C	A	1.324e^-5	0.818	NON_SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
3R	13418710	3R_13418710_SNP [dm3] 3R_17592988_SNP [dm6]	C	T	1.337e^-5	0.818	INTERGENIC
3R	22311997	3R_22311997_SNP [dm3] 3R_26486275_SNP [dm6]	T	A	1.365e^-5	0.818	INTRON plum
X	16289127	X_16289127_SNP [dm3] X_16395094_SNP [dm6]	T	G	1.381e^-5	0.818	SYNONYMOUS_CODING mei-41
3R	11443794	3R_11443794_INS [dm3] 3R_15618072_INS [dm6]	A	AA	1.453e^-5	0.818	INTERGENIC
3R	13722160	3R_13722160_SNP [dm3] 3R_17896438_SNP [dm6]	T	A	1.471e^-5	0.818	INTRON Rim
2L	13874312	2L_13874312_SNP [dm3] 2L_13874312_SNP [dm6]	C	T	1.589e^-5	0.818	INTRON CenG1A
3R	13187998	3R_13187998_SNP [dm3] 3R_17362276_SNP [dm6]	A	C	1.637e^-5	0.818	INTRON beat-IIa
3R	14987341	3R_14987341_SNP [dm3] 3R_19161619_SNP [dm6]	G	C	1.675e^-5	0.818	SYNONYMOUS_CODING CG42359 INTRON CG42358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	10649336	3R_10649336_SNP [dm3] 3R_14823614_SNP [dm6]	G	T	1.765e^-5	0.818	INTRON btsz	TF binding site mE1_TFBS_bab1
X	5877627	X_5877627_SNP [dm3] X_5983594_SNP [dm6]	G	A	1.852e^-5	0.818	INTRON Grip
X	9754921	X_9754921_SNP [dm3] X_9860888_SNP [dm6]	T	C	1.875e^-5	0.818	INTERGENIC
3R	18435193	3R_18435193_SNP [dm3] 3R_22609471_SNP [dm6]	C	T	1.985e^-5	0.818	NON_SYNONYMOUS_CODING CG31156 UPSTREAM CG13843 DOWNSTREAM Efa6	TF binding site mE1_TFBS_inv
3L	17403244	3L_17403244_SNP [dm3] 3L_17410144_SNP [dm6]	A	T	1.993e^-5	0.818	INTRON blot
3R	23268536	3R_23268536_SNP [dm3] 3R_27442814_SNP [dm6]	C	T	2.110e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	5443035	3R_5443035_SNP [dm3] 3R_9617313_SNP [dm6]	A	G	2.132e^-5	0.818	INTRON CG8312
3R	20949949	3R_20949949_INS [dm3] 3R_25124227_INS [dm6]	A	ATA	2.158e^-5	0.818	INTRON vig2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18598851	2R_18598851_SNP [dm3] 2R_22711346_SNP [dm6]	A	T	2.159e^-5	0.818	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2R	17209052	2R_17209052_SNP [dm3] 2R_21321547_SNP [dm6]	A	G	2.184e^-5	0.818	SYNONYMOUS_CODING CG30394
3R	11465272	3R_11465272_SNP [dm3] 3R_15639550_SNP [dm6]	C	T	2.226e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10360251	3R_10360251_SNP [dm3] 3R_14534529_SNP [dm6]	T	C	2.355e^-5	0.818	INTRON Pde6
3R	22312347	3R_22312347_SNP [dm3] 3R_26486625_SNP [dm6]	T	C	2.440e^-5	0.818	INTRON plum
2R	19881715	2R_19881715_SNP [dm3] 2R_23994192_SNP [dm6]	G	A	2.446e^-5	0.818	INTRON CG3860
3L	9900731	3L_9900731_SNP [dm3] 3L_9907631_SNP [dm6]	A	G	2.481e^-5	0.818	UPSTREAM CG34356 INTERGENIC
X	16289076	X_16289076_SNP [dm3] X_16395043_SNP [dm6]	G	A	2.494e^-5	0.818	SYNONYMOUS_CODING mei-41
X	5877675	X_5877675_INS [dm3] X_5983642_INS [dm6]	T	TCTTGGTCTG	2.516e^-5	0.818	INTRON Grip
2L	6015395	2L_6015395_SNP [dm3] 2L_6015395_SNP [dm6]	C	A	2.534e^-5	0.818	INTRON H2.0
X	5877660	X_5877660_SNP [dm3] X_5983627_SNP [dm6]	C	A	2.614e^-5	0.818	INTRON Grip
X	5877684	X_5877684_SNP [dm3] X_5983651_SNP [dm6]	A	T	2.618e^-5	0.818	INTRON Grip
2L	7102226	2L_7102226_SNP [dm3] 2L_7102226_SNP [dm6]	T	C	2.624e^-5	0.818	INTRON Pvf3
2R	17462108	2R_17462108_SNP [dm3] 2R_21574603_SNP [dm6]	C	T	2.648e^-5	0.818	INTRON CG10440
2L	2247949	2L_2247949_DEL [dm3] 2L_2247949_DEL [dm6]	GC	G	2.690e^-5	0.818	DOWNSTREAM CR42859 INTERGENIC
3R	10650757	3R_10650757_SNP [dm3] 3R_14825035_SNP [dm6]	A	G	2.699e^-5	0.818	SPLICE_SITE_DONOR btsz INTRON btsz
3R	9153967	3R_9153967_SNP [dm3] 3R_13328245_SNP [dm6]	A	G	2.717e^-5	0.818	DOWNSTREAM PK2-R2 INTERGENIC
2R	18495783	2R_18495783_SNP [dm3] 2R_22608278_SNP [dm6]	A	T	2.739e^-5	0.818	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18455202	2R_18455202_SNP [dm3] 2R_22567697_SNP [dm6]	C	T	2.750e^-5	0.818	INTRON dnr1
2R	14092184	2R_14092184_SNP [dm3] 2R_18204679_SNP [dm6]	A	C	2.856e^-5	0.831	INTERGENIC
3L	1145625	3L_1145625_SNP [dm3] 3L_1145625_SNP [dm6]	A	G	2.882e^-5	0.831	INTRON bab2
3L	16738356	3L_16738356_SNP [dm3] 3L_16745256_SNP [dm6]	G	A	3.123e^-5	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	7497535	2R_7497535_SNP [dm3] 2R_11610030_SNP [dm6]	C	A	3.142e^-5	0.849	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2866986	3L_2866986_SNP [dm3] 3L_2866986_SNP [dm6]	C	T	3.185e^-5	0.849	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	3.200e^-5	0.849	INTRON kibra
2L	7127119	2L_7127119_SNP [dm3] 2L_7127119_SNP [dm6]	G	T	3.249e^-5	0.849	INTRON Pvf3
3R	18496052	3R_18496052_SNP [dm3] 3R_22670330_SNP [dm6]	C	T	3.422e^-5	0.849	INTRON CG45058
3R	10657083	3R_10657083_SNP [dm3] 3R_14831361_SNP [dm6]	G	T	3.426e^-5	0.849	INTRON btsz
2L	6310982	2L_6310982_SNP [dm3] 2L_6310982_SNP [dm6]	T	C	3.493e^-5	0.849	INTRON Ddr
3L	12103556	3L_12103556_SNP [dm3] 3L_12110456_SNP [dm6]	C	T	3.507e^-5	0.849	INTERGENIC
3R	14175470	3R_14175470_SNP [dm3] 3R_18349748_SNP [dm6]	C	T	3.590e^-5	0.849	INTRON CG15803
2L	2738238	2L_2738238_SNP [dm3] 2L_2738238_SNP [dm6]	G	C	3.592e^-5	0.849	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10652723	3R_10652723_SNP [dm3] 3R_14827001_SNP [dm6]	G	A	3.648e^-5	0.849	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13116080	3L_13116080_SNP [dm3] 3L_13122980_SNP [dm6]	A	T	3.649e^-5	0.849	INTERGENIC
3L	20995071	3L_20995071_DEL [dm3] 3L_21001971_DEL [dm6]	GACTTGGGG	G	3.669e^-5	0.849	INTRON skd	TF binding site mE1_TFBS_cad
X	5877665	X_5877665_SNP [dm3] X_5983632_SNP [dm6]	C	A	3.697e^-5	0.849	INTRON Grip
2R	12464260	2R_12464260_SNP [dm3] 2R_16576755_SNP [dm6]	A	T	3.701e^-5	0.849	UPSTREAM CG8317 INTERGENIC
3R	23253202	3R_23253202_SNP [dm3] 3R_27427480_SNP [dm6]	C	T	3.739e^-5	0.849	INTRON side
2L	3271697	2L_3271697_SNP [dm3] 2L_3271697_SNP [dm6]	A	T	3.773e^-5	0.849	UTR_3_PRIME CG3347
2R	18455229	2R_18455229_SNP [dm3] 2R_22567724_SNP [dm6]	C	A	3.805e^-5	0.849	INTRON dnr1
2R	15268200	2R_15268200_SNP [dm3] 2R_19380695_SNP [dm6]	C	A	3.998e^-5	0.852	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
3R	13166212	3R_13166212_SNP [dm3] 3R_17340490_SNP [dm6]	C	G	4.168e^-5	0.852	INTRON beat-IIa
2R	15322942	2R_15322942_SNP [dm3] 2R_19435437_SNP [dm6]	C	G	4.172e^-5	0.852	SYNONYMOUS_CODING Fak
2R	7504304	2R_7504304_SNP [dm3] 2R_11616799_SNP [dm6]	C	G	4.218e^-5	0.852	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3L	1085457	3L_1085457_SNP [dm3] 3L_1085457_SNP [dm6]	C	G	4.231e^-5	0.852	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	4.336e^-5	0.852	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	11519565	2R_11519565_SNP [dm3] 2R_15632060_SNP [dm6]	T	C	4.340e^-5	0.852	INTRON CG42524
2R	12125675	2R_12125675_SNP [dm3] 2R_16238170_SNP [dm6]	A	T	4.357e^-5	0.852	UTR_3_PRIME krimp DOWNSTREAM CG3687
2L	2325690	2L_2325690_SNP [dm3] 2L_2325690_SNP [dm6]	G	C	4.403e^-5	0.852	INTRON CG9967 & 1 other
3R	25953305	3R_25953305_SNP [dm3] 3R_30127583_SNP [dm6]	A	G	4.472e^-5	0.852	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	13181560	3R_13181560_SNP [dm3] 3R_17355838_SNP [dm6]	A	T	4.473e^-5	0.852	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2R	3012222	2R_3012222_SNP [dm3] 2R_7124717_SNP [dm6]	G	A	4.490e^-5	0.852	INTRON esn	TF binding site mE1_TFBS_chinmo
3L	1139879	3L_1139879_SNP [dm3] 3L_1139879_SNP [dm6]	C	G	4.543e^-5	0.852	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
X	21892908	X_21892908_SNP [dm3] X_22491072_SNP [dm6]	C	G	4.586e^-5	0.852	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
2L	3326514	2L_3326514_SNP [dm3] 2L_3326514_SNP [dm6]	C	T	4.642e^-5	0.852	SYNONYMOUS_CODING CG33281
2R	5297312	2R_5297312_SNP [dm3] 2R_9409807_SNP [dm6]	T	C	4.646e^-5	0.852	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18227247	X_18227247_SNP [dm3] X_18333214_SNP [dm6]	C	T	4.664e^-5	0.852	INTRON CG6123
3L	1921363	3L_1921363_SNP [dm3] 3L_1921363_SNP [dm6]	T	G	4.836e^-5	0.852	UTR_5_PRIME Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	22938720	3R_22938720_SNP [dm3] 3R_27112998_SNP [dm6]	A	G	4.860e^-5	0.852	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23268339	3R_23268339_SNP [dm3] 3R_27442617_SNP [dm6]	G	A	4.898e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12891081	X_12891081_SNP [dm3] X_12997048_SNP [dm6]	T	G	4.918e^-5	0.852	INTRON rad
3R	17086505	3R_17086505_SNP [dm3] 3R_21260783_SNP [dm6]	C	T	4.947e^-5	0.852	INTRON ETHR
2L	3326511	2L_3326511_SNP [dm3] 2L_3326511_SNP [dm6]	T	A	5.116e^-5	0.852	SYNONYMOUS_CODING CG33281
2L	3326526	2L_3326526_SNP [dm3] 2L_3326526_SNP [dm6]	C	T	5.116e^-5	0.852	SYNONYMOUS_CODING CG33281
3R	10658723	3R_10658723_SNP [dm3] 3R_14833001_SNP [dm6]	T	C	5.279e^-5	0.852	INTRON btsz
3L	8752031	3L_8752031_DEL [dm3] 3L_8758931_DEL [dm6]	AA	A	5.292e^-5	0.852	INTRON Fhos
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	5.368e^-5	0.852	INTRON dpr4
2R	7043680	2R_7043680_SNP [dm3] 2R_11156175_SNP [dm6]	T	C	5.382e^-5	0.852	DOWNSTREAM CG13230 INTRON CG13229	TF binding site mE1_TFBS_inv transposable element FlyBase
3R	10661156	3R_10661156_SNP [dm3] 3R_14835434_SNP [dm6]	A	C	5.402e^-5	0.852	INTRON btsz
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	5.440e^-5	0.852	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	15995307	2R_15995307_DEL [dm3] 2R_20107802_DEL [dm6]	GG	G	5.459e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1034032	2L_1034032_SNP [dm3] 2L_1034032_SNP [dm6]	A	G	5.513e^-5	0.852	NON_SYNONYMOUS_CODING IA-2
X	16220521	X_16220521_SNP [dm3] X_16326488_SNP [dm6]	C	T	5.585e^-5	0.852	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9898232	3L_9898232_SNP [dm3] 3L_9905132_SNP [dm6]	C	G	5.707e^-5	0.852	INTERGENIC
2R	17605275	2R_17605275_SNP [dm3] 2R_21717770_SNP [dm6]	G	A	5.714e^-5	0.852	UTR_5_PRIME Tango11 UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11357355	3L_11357355_SNP [dm3] 3L_11364255_SNP [dm6]	G	A	5.743e^-5	0.852	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
3L	9896834	3L_9896834_SNP [dm3] 3L_9903734_SNP [dm6]	A	C	5.763e^-5	0.852	DOWNSTREAM nudE INTERGENIC
3R	10649910	3R_10649910_SNP [dm3] 3R_14824188_SNP [dm6]	C	T	5.779e^-5	0.852	NON_SYNONYMOUS_CODING btsz
3R	10649932	3R_10649932_SNP [dm3] 3R_14824210_SNP [dm6]	G	T	5.779e^-5	0.852	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz INTRON btsz
X	8415765	X_8415765_SNP [dm3] X_8521732_SNP [dm6]	T	A	5.782e^-5	0.852	INTRON Nrg
2L	18622786	2L_18622786_SNP [dm3] 2L_18622786_SNP [dm6]	T	G	5.782e^-5	0.852	INTRON MESR3
2L	13768026	2L_13768026_SNP [dm3] 2L_13768026_SNP [dm6]	G	T	5.924e^-5	0.852	INTRON TM9SF4
2R	10914484	2R_10914484_SNP [dm3] 2R_15026979_SNP [dm6]	G	A	6.033e^-5	0.852	INTRON hbs	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
X	5673877	X_5673877_SNP [dm3] X_5779844_SNP [dm6]	G	A	6.166e^-5	0.852	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
3L	6653492	3L_6653492_SNP [dm3] 3L_6660392_SNP [dm6]	A	C	6.190e^-5	0.852	INTERGENIC
3L	9449498	3L_9449498_SNP [dm3] 3L_9456398_SNP [dm6]	C	T	6.242e^-5	0.852	SYNONYMOUS_STOP CG3437 UTR_5_PRIME CG3552 UPSTREAM phol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	9179752	2L_9179752_SNP [dm3] 2L_9179752_SNP [dm6]	C	G	6.246e^-5	0.852	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15165466	3R_15165466_SNP [dm3] 3R_19339744_SNP [dm6]	G	C	6.266e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	10649931	3R_10649931_SNP [dm3] 3R_14824209_SNP [dm6]	A	G	6.369e^-5	0.852	NON_SYNONYMOUS_CODING btsz SPLICE_SITE_REGION btsz INTRON btsz
3R	11210531	3R_11210531_SNP [dm3] 3R_15384809_SNP [dm6]	G	C	6.379e^-5	0.852	INTRON Rbp
2R	9830742	2R_9830742_SNP [dm3] 2R_13943237_SNP [dm6]	C	A	6.477e^-5	0.852	SYNONYMOUS_CODING DJ-1alpha DOWNSTREAM AGO1	TF binding site mE1_TFBS_inv
2L	1435021	2L_1435021_DEL [dm3] 2L_1435021_DEL [dm6]	CTC	G	6.497e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	6.570e^-5	0.852	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	1291343	2L_1291343_SNP [dm3] 2L_1291343_SNP [dm6]	A	C	6.570e^-5	0.852	INTRON robo3
3R	10651991	3R_10651991_SNP [dm3] 3R_14826269_SNP [dm6]	C	A	6.632e^-5	0.852	SYNONYMOUS_CODING btsz
3R	5440687	3R_5440687_INS [dm3] 3R_9614965_INS [dm6]	A	AAA	6.697e^-5	0.852	INTRON CG8312
3R	22950471	3R_22950471_SNP [dm3] 3R_27124749_SNP [dm6]	G	T	6.745e^-5	0.852	UPSTREAM CG6059 DOWNSTREAM CG6051 INTERGENIC
3L	6650211	3L_6650211_SNP [dm3] 3L_6657111_SNP [dm6]	C	A	6.807e^-5	0.852	INTERGENIC
3R	13274544	3R_13274544_SNP [dm3] 3R_17448822_SNP [dm6]	A	G	6.843e^-5	0.852	UTR_5_PRIME Eh
3R	10661109	3R_10661109_SNP [dm3] 3R_14835387_SNP [dm6]	T	A	6.941e^-5	0.852	INTRON btsz
3L	14556133	3L_14556133_SNP [dm3] 3L_14563033_SNP [dm6]	T	A	6.965e^-5	0.852	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	803903	2L_803903_SNP [dm3] 2L_803903_SNP [dm6]	G	A	6.970e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7096706	3R_7096706_SNP [dm3] 3R_11270984_SNP [dm6]	G	A	7.142e^-5	0.852	EXON CR31386
3R	7096741	3R_7096741_SNP [dm3] 3R_11271019_SNP [dm6]	C	G	7.142e^-5	0.852	EXON CR31386
2L	13413829	2L_13413829_SNP [dm3] 2L_13413829_SNP [dm6]	A	G	7.161e^-5	0.852	UTR_3_PRIME CG16956 DOWNSTREAM CG16848
2R	8668755	2R_8668755_SNP [dm3] 2R_12781250_SNP [dm6]	T	C	7.181e^-5	0.852	SYNONYMOUS_CODING sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14556145	3L_14556145_SNP [dm3] 3L_14563045_SNP [dm6]	A	G	7.254e^-5	0.852	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	7.316e^-5	0.852	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16657131	2R_16657131_SNP [dm3] 2R_20769626_SNP [dm6]	T	G	7.327e^-5	0.852	INTERGENIC
X	19715076	X_19715076_SNP [dm3] X_19821043_SNP [dm6]	C	A	7.387e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9178770	3R_9178770_SNP [dm3] 3R_13353048_SNP [dm6]	G	T	7.447e^-5	0.852	UPSTREAM mthl12 INTERGENIC
3R	17965772	3R_17965772_SNP [dm3] 3R_22140050_SNP [dm6]	G	C	7.548e^-5	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16563536	2R_16563536_SNP [dm3] 2R_20676031_SNP [dm6]	G	A	7.577e^-5	0.852	INTERGENIC
2R	7015774	2R_7015774_DEL [dm3] 2R_11128269_DEL [dm6]	CCTTTGGC	C	7.590e^-5	0.852	INTERGENIC
3R	10661144	3R_10661144_SNP [dm3] 3R_14835422_SNP [dm6]	G	A	7.611e^-5	0.852	INTRON btsz
3L	14556164	3L_14556164_SNP [dm3] 3L_14563064_SNP [dm6]	T	G	7.666e^-5	0.852	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	7516785	2R_7516785_SNP [dm3] 2R_11629280_SNP [dm6]	T	G	7.760e^-5	0.852	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6759885	2R_6759885_DEL [dm3] 2R_10872380_DEL [dm6]	GTAAG	A	7.774e^-5	0.852	INTRON CG30015
3L	4692562	3L_4692562_SNP [dm3] 3L_4692562_SNP [dm6]	T	G	7.850e^-5	0.852	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9934199	2R_9934199_SNP [dm3] 2R_14046694_SNP [dm6]	G	T	7.859e^-5	0.852	INTRON mam
2R	7020297	2R_7020297_SNP [dm3] 2R_11132792_SNP [dm6]	T	C	7.860e^-5	0.852	INTERGENIC
2L	1856218	2L_1856218_SNP [dm3] 2L_1856218_SNP [dm6]	A	G	7.865e^-5	0.852	INTRON wry
2R	16697464	2R_16697464_SNP [dm3] 2R_20809959_SNP [dm6]	T	A	7.881e^-5	0.852	INTERGENIC
3R	10654083	3R_10654083_SNP [dm3] 3R_14828361_SNP [dm6]	A	C	7.892e^-5	0.852	INTRON btsz
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	7.896e^-5	0.852	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10648165	3R_10648165_SNP [dm3] 3R_14822443_SNP [dm6]	G	A	7.902e^-5	0.852	INTRON btsz
2L	11246038	2L_11246038_SNP [dm3] 2L_11246038_SNP [dm6]	A	T	7.905e^-5	0.852	INTRON ab	TF binding site mE1_TFBS_chinmo
3L	20425790	3L_20425790_SNP [dm3] 3L_20432690_SNP [dm6]	T	C	8.011e^-5	0.852	UTR_5_PRIME Psn UPSTREAM Las	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6198827	2R_6198827_SNP [dm3] 2R_10311322_SNP [dm6]	G	A	8.240e^-5	0.852	SYNONYMOUS_CODING Obp46a DOWNSTREAM CG12909	TF binding site mE1_TFBS_sens
2L	21754653	2L_21754653_SNP [dm3] 2L_21754653_SNP [dm6]	A	G	8.241e^-5	0.852	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6652635	3L_6652635_SNP [dm3] 3L_6659535_SNP [dm6]	G	A	8.491e^-5	0.852	INTERGENIC
3L	1139200	3L_1139200_SNP [dm3] 3L_1139200_SNP [dm6]	C	T	8.497e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	436154	2R_436154_SNP [dm3] 2R_4548649_SNP [dm6]	G	A	8.633e^-5	0.852	INTRON Stlk	transposable element FlyBase
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	8.653e^-5	0.852	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7043637	2R_7043637_SNP [dm3] 2R_11156132_SNP [dm6]	C	T	8.672e^-5	0.852	DOWNSTREAM CG13230 INTRON CG13229	TF binding site mE1_TFBS_inv transposable element FlyBase
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	8.676e^-5	0.852	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9134505	3R_9134505_SNP [dm3] 3R_13308783_SNP [dm6]	G	T	8.733e^-5	0.852	NON_SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
2R	17208956	2R_17208956_SNP [dm3] 2R_21321451_SNP [dm6]	C	T	8.963e^-5	0.852	SYNONYMOUS_CODING CG30394
3L	4692530	3L_4692530_SNP [dm3] 3L_4692530_SNP [dm6]	T	C	9.029e^-5	0.852	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11645293	3L_11645293_SNP [dm3] 3L_11652193_SNP [dm6]	C	A	9.048e^-5	0.852	INTRON CG32085
2L	2738440	2L_2738440_SNP [dm3] 2L_2738440_SNP [dm6]	C	T	9.065e^-5	0.852	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_sens
2L	2738443	2L_2738443_SNP [dm3] 2L_2738443_SNP [dm6]	C	T	9.065e^-5	0.852	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689
2R	16657029	2R_16657029_SNP [dm3] 2R_20769524_SNP [dm6]	T	G	9.092e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11323756	3R_11323756_SNP [dm3] 3R_15498034_SNP [dm6]	T	G	9.156e^-5	0.852	INTERGENIC
3L	3022593	3L_3022593_SNP [dm3] 3L_3022593_SNP [dm6]	A	T	9.264e^-5	0.852	INTERGENIC
3R	14141762	3R_14141762_SNP [dm3] 3R_18316040_SNP [dm6]	G	A	9.285e^-5	0.852	DOWNSTREAM CG31235 INTERGENIC
X	9791472	X_9791472_DEL [dm3] X_9897439_DEL [dm6]	CAATTGAC	C	9.327e^-5	0.852	INTRON CG15249
3L	3163641	3L_3163641_SNP [dm3] 3L_3163641_SNP [dm6]	T	C	9.370e^-5	0.852	SYNONYMOUS_CODING rasp DOWNSTREAM Asciz
3L	3165167	3L_3165167_SNP [dm3] 3L_3165167_SNP [dm6]	G	A	9.370e^-5	0.852	START_GAINED Asciz UTR_5_PRIME Asciz UPSTREAM CG32280 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22033517	3R_22033517_SNP [dm3] 3R_26207795_SNP [dm6]	T	A	9.374e^-5	0.852	INTRON CR44320
2L	8243582	2L_8243582_SNP [dm3] 2L_8243582_SNP [dm6]	A	C	9.392e^-5	0.852	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
2L	902175	2L_902175_SNP [dm3] 2L_902175_SNP [dm6]	G	A	9.444e^-5	0.852	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14620203	2R_14620203_SNP [dm3] 2R_18732698_SNP [dm6]	C	G	9.483e^-5	0.852	INTRON Hs3st-A
3R	11460974	3R_11460974_SNP [dm3] 3R_15635252_SNP [dm6]	A	G	9.528e^-5	0.852	UPSTREAM CG43335 INTERGENIC
2R	5714451	2R_5714451_SNP [dm3] 2R_9826946_SNP [dm6]	T	C	9.590e^-5	0.852	SYNONYMOUS_CODING dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3163695	3L_3163695_SNP [dm3] 3L_3163695_SNP [dm6]	T	A	9.698e^-5	0.852	SYNONYMOUS_CODING rasp DOWNSTREAM Asciz	TF binding site BDTNP1_TFBS_twi
2L	2738432	2L_2738432_SNP [dm3] 2L_2738432_SNP [dm6]	C	A	9.727e^-5	0.852	DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2275435	2L_2275435_SNP [dm3] 2L_2275435_SNP [dm6]	A	C	9.792e^-5	0.852	DOWNSTREAM CR43753 INTRON CR43753
X	20943354	X_20943354_SNP [dm3] X_21072327_SNP [dm6]	C	T	9.799e^-5	0.852	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22312685	3R_22312685_SNP [dm3] 3R_26486963_SNP [dm6]	G	A	9.821e^-5	0.852	INTRON plum
2L	21788045	2L_21788045_SNP [dm3] 2L_21788045_SNP [dm6]	C	A	9.834e^-5	0.852	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	12125611	2R_12125611_INS [dm3] 2R_16238106_INS [dm6]	G	GG	9.839e^-5	0.852	UTR_3_PRIME krimp DOWNSTREAM CG3687
3R	21982999	3R_21982999_SNP [dm3] 3R_26157277_SNP [dm6]	T	G	9.846e^-5	0.852	INTERGENIC
3L	10566012	3L_10566012_SNP [dm3] 3L_10572912_SNP [dm6]	A	G	9.848e^-5	0.852	INTRON A2bp1
3L	12822965	3L_12822965_SNP [dm3] 3L_12829865_SNP [dm6]	C	T	9.889e^-5	0.852	INTRON CG10960
3R	22004843	3R_22004843_SNP [dm3] 3R_26179121_SNP [dm6]	T	C	9.963e^-5	0.852	INTRON CG31323
3L	6652430	3L_6652430_SNP [dm3] 3L_6659330_SNP [dm6]	T	C	9.967e^-5	0.852	INTERGENIC
2L	2252031	2L_2252031_SNP [dm3] 2L_2252031_SNP [dm6]	T	C	1.001e^-4	0.852	SYNONYMOUS_CODING CG17239 UPSTREAM Ser12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1033631	2L_1033631_SNP [dm3] 2L_1033631_SNP [dm6]	G	C	1.015e^-4	0.852	INTRON IA-2
3L	4692524	3L_4692524_SNP [dm3] 3L_4692524_SNP [dm6]	T	C	1.016e^-4	0.852	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18664895	3R_18664895_SNP [dm3] 3R_22839173_SNP [dm6]	C	G	1.022e^-4	0.852	INTERGENIC
3L	8719565	3L_8719565_SNP [dm3] 3L_8726465_SNP [dm6]	C	T	1.023e^-4	0.852	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC	TF binding site mE1_TFBS_cad
X	8415712	X_8415712_SNP [dm3] X_8521679_SNP [dm6]	A	C	1.024e^-4	0.852	INTRON Nrg
X	21042597	X_21042597_SNP [dm3] X_21171570_SNP [dm6]	A	C	1.028e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	13239802	3L_13239802_DEL [dm3] 3L_13246702_DEL [dm6]	GC	G	1.040e^-4	0.852	DOWNSTREAM CG32119 INTRON caps
2R	6593824	2R_6593824_SNP [dm3] 2R_10706319_SNP [dm6]	T	C	1.043e^-4	0.852	UTR_5_PRIME stan	TF binding site mE1_TFBS_cad
3R	13181712	3R_13181712_SNP [dm3] 3R_17355990_SNP [dm6]	T	C	1.058e^-4	0.852	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	1424212	3L_1424212_SNP [dm3] 3L_1424212_SNP [dm6]	C	T	1.065e^-4	0.852	UPSTREAM CG9173 INTRON Ptp61F
3R	10662916	3R_10662916_SNP [dm3] 3R_14837194_SNP [dm6]	C	A	1.078e^-4	0.852	INTRON btsz
3R	10662934	3R_10662934_SNP [dm3] 3R_14837212_SNP [dm6]	G	T	1.078e^-4	0.852	INTRON btsz
3R	12978516	3R_12978516_SNP [dm3] 3R_17152794_SNP [dm6]	C	A	1.079e^-4	0.852	UTR_3_PRIME CG5292 DOWNSTREAM Mur89F
3L	6339185	3L_6339185_SNP [dm3] 3L_6346085_SNP [dm6]	G	C	1.091e^-4	0.852	INTRON CG13300
2R	18911751	2R_18911751_SNP [dm3] 2R_23024228_SNP [dm6]	T	A	1.092e^-4	0.852	INTRON twi & 1 other
2R	19964907	2R_19964907_SNP [dm3] 2R_24077384_SNP [dm6]	T	C	1.097e^-4	0.852	SPLICE_SITE_REGION Mlp60A DOWNSTREAM CG10339 INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22033620	3R_22033620_SNP [dm3] 3R_26207898_SNP [dm6]	G	A	1.101e^-4	0.852	INTRON CR44320
3R	19049738	3R_19049738_SNP [dm3] 3R_23224016_SNP [dm6]	G	A	1.102e^-4	0.852	INTRON cnc
X	5673884	X_5673884_SNP [dm3] X_5779851_SNP [dm6]	C	G	1.107e^-4	0.852	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
3L	18117607	3L_18117607_SNP [dm3] 3L_18124507_SNP [dm6]	G	A	1.116e^-4	0.852	INTERGENIC
3L	17689196	3L_17689196_SNP [dm3] 3L_17696096_SNP [dm6]	T	G	1.121e^-4	0.852	INTRON Ccn
3L	17689203	3L_17689203_SNP [dm3] 3L_17696103_SNP [dm6]	A	G	1.121e^-4	0.852	INTRON Ccn
3L	17689215	3L_17689215_SNP [dm3] 3L_17696115_SNP [dm6]	A	T	1.121e^-4	0.852	INTRON Ccn
2R	11624707	2R_11624707_SNP [dm3] 2R_15737202_SNP [dm6]	C	G	1.128e^-4	0.852	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11120988	3R_11120988_SNP [dm3] 3R_15295266_SNP [dm6]	C	A	1.142e^-4	0.852	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1
3R	11120990	3R_11120990_SNP [dm3] 3R_15295268_SNP [dm6]	A	T	1.142e^-4	0.852	SYNONYMOUS_CODING Tm1 INTRON Tm1
2L	7762170	2L_7762170_SNP [dm3] 2L_7762170_SNP [dm6]	A	G	1.144e^-4	0.852	INTRON CG7196
2R	11961642	2R_11961642_SNP [dm3] 2R_16074137_SNP [dm6]	T	C	1.149e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20848802	3R_20848802_SNP [dm3] 3R_25023080_SNP [dm6]	T	A	1.154e^-4	0.852	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	16574938	3R_16574938_DEL [dm3] 3R_20749216_DEL [dm6]	AAAACTCCCCA...	A	1.156e^-4	0.852	UPSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3487801	3L_3487801_SNP [dm3] 3L_3487801_SNP [dm6]	C	T	1.157e^-4	0.852	INTRON CG42324
3R	12980352	3R_12980352_SNP [dm3] 3R_17154630_SNP [dm6]	G	A	1.169e^-4	0.852	NON_SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3162277	3L_3162277_SNP [dm3] 3L_3162277_SNP [dm6]	G	A	1.171e^-4	0.852	NON_SYNONYMOUS_CODING rasp DOWNSTREAM pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6410991	2L_6410991_SNP [dm3] 2L_6410991_SNP [dm6]	C	T	1.172e^-4	0.852	START_GAINED CG42368 UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20425634	3L_20425634_SNP [dm3] 3L_20432534_SNP [dm6]	T	A	1.194e^-4	0.852	UTR_5_PRIME Psn UPSTREAM Psn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27154938	3R_27154938_SNP [dm3] 3R_31329216_SNP [dm6]	C	T	1.204e^-4	0.852	INTRON CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	551351	3L_551351_SNP [dm3] 3L_551351_SNP [dm6]	A	G	1.207e^-4	0.852	INTRON hipk	TF binding site BDTNP1_TFBS_dl
2R	398847	2R_398847_DEL [dm3] 2R_4511342_DEL [dm6]	AACAA	A	1.216e^-4	0.852	INTERGENIC
2R	5674668	2R_5674668_SNP [dm3] 2R_9787163_SNP [dm6]	T	C	1.216e^-4	0.852	INTRON CG1688
X	20024770	X_20024770_SNP [dm3] X_20130737_SNP [dm6]	C	T	1.216e^-4	0.852	UTR_3_PRIME CG42582
X	8163844	X_8163844_SNP [dm3] X_8269811_SNP [dm6]	C	G	1.217e^-4	0.852	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	4937318	3R_4937318_SNP [dm3] 3R_9111596_SNP [dm6]	C	T	1.220e^-4	0.852	INTRON pum
2R	12125705	2R_12125705_SNP [dm3] 2R_16238200_SNP [dm6]	T	C	1.221e^-4	0.852	UTR_3_PRIME krimp DOWNSTREAM CG3687
2L	17723903	2L_17723903_SNP [dm3] 2L_17723903_SNP [dm6]	C	A	1.223e^-4	0.852	INTRON CadN
3R	21983246	3R_21983246_SNP [dm3] 3R_26157524_SNP [dm6]	C	T	1.224e^-4	0.852	INTERGENIC
2R	20863791	2R_20863791_SNP [dm3] 2R_24976268_SNP [dm6]	C	T	1.225e^-4	0.852	UPSTREAM CG2736 DOWNSTREAM emp & 1 other INTERGENIC
2R	6703384	2R_6703384_SNP [dm3] 2R_10815879_SNP [dm6]	G	A	1.225e^-4	0.852	DOWNSTREAM dgo & 1 other INTERGENIC
2L	2077693	2L_2077693_SNP [dm3] 2L_2077693_SNP [dm6]	A	T	1.232e^-4	0.852	INTRON dpr3
3R	11402098	3R_11402098_SNP [dm3] 3R_15576376_SNP [dm6]	A	C	1.244e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	10658738	3R_10658738_SNP [dm3] 3R_14833016_SNP [dm6]	G	C	1.246e^-4	0.852	INTRON btsz
2L	6311047	2L_6311047_SNP [dm3] 2L_6311047_SNP [dm6]	G	A	1.265e^-4	0.852	INTRON Ddr
2R	8871353	2R_8871353_SNP [dm3] 2R_12983848_SNP [dm6]	A	T	1.266e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18680270	3R_18680270_SNP [dm3] 3R_22854548_SNP [dm6]	C	G	1.266e^-4	0.852	INTERGENIC
2R	18164788	2R_18164788_INS [dm3] 2R_22277283_INS [dm6]	G	AT	1.267e^-4	0.852	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6392706	X_6392706_SNP [dm3] X_6498673_SNP [dm6]	A	T	1.270e^-4	0.852	INTRON CG42340
2R	13335028	2R_13335028_SNP [dm3] 2R_17447523_SNP [dm6]	G	A	1.271e^-4	0.852	UPSTREAM mthl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16965159	3L_16965159_MNP [dm3] 3L_16972059_MNP [dm6]	AGA	GAG	1.273e^-4	0.852	INTRON Exn
2L	8024701	2L_8024701_SNP [dm3] 2L_8024701_SNP [dm6]	C	A	1.277e^-4	0.852	SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
3R	14652726	3R_14652726_SNP [dm3] 3R_18827004_SNP [dm6]	A	G	1.284e^-4	0.852	INTRON CG18208
2L	7755051	2L_7755051_SNP [dm3] 2L_7755051_SNP [dm6]	A	T	1.287e^-4	0.852	INTRON CG7196
3L	6650340	3L_6650340_SNP [dm3] 3L_6657240_SNP [dm6]	T	C	1.298e^-4	0.852	INTERGENIC
2R	16563527	2R_16563527_SNP [dm3] 2R_20676022_SNP [dm6]	T	A	1.303e^-4	0.852	INTERGENIC
3R	11451962	3R_11451962_SNP [dm3] 3R_15626240_SNP [dm6]	G	C	1.305e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6202477	2R_6202477_SNP [dm3] 2R_10314972_SNP [dm6]	G	T	1.307e^-4	0.852	INTRON Ndg	TF binding site BDTNP1_TFBS_twi
3R	21341198	3R_21341198_SNP [dm3] 3R_25515476_SNP [dm6]	A	C	1.316e^-4	0.852	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13061662	X_13061662_SNP [dm3] X_13167629_SNP [dm6]	T	A	1.319e^-4	0.852	SYNONYMOUS_CODING CG34411
X	21102338	X_21102338_SNP [dm3] X_21231311_SNP [dm6]	T	G	1.325e^-4	0.852	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3R	14175457	3R_14175457_SNP [dm3] 3R_18349735_SNP [dm6]	A	T	1.334e^-4	0.852	INTRON CG15803
3L	8750828	3L_8750828_SNP [dm3] 3L_8757728_SNP [dm6]	C	T	1.337e^-4	0.852	DOWNSTREAM CG6576 INTRON Fhos
3R	9146112	3R_9146112_SNP [dm3] 3R_13320390_SNP [dm6]	A	G	1.343e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20800563	3R_20800563_SNP [dm3] 3R_24974841_SNP [dm6]	C	T	1.345e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2859534	2L_2859534_SNP [dm3] 2L_2859534_SNP [dm6]	A	T	1.346e^-4	0.852	INTRON CG2991
2L	13901680	2L_13901680_SNP [dm3] 2L_13901680_SNP [dm6]	G	A	1.346e^-4	0.852	SYNONYMOUS_CODING Smg5
2L	17175292	2L_17175292_SNP [dm3] 2L_17175292_SNP [dm6]	A	T	1.355e^-4	0.852	UPSTREAM CR44394 INTERGENIC
2L	11925517	2L_11925517_SNP [dm3] 2L_11925517_SNP [dm6]	A	G	1.359e^-4	0.852	INTRON Pde1c
2L	13768024	2L_13768024_SNP [dm3] 2L_13768024_SNP [dm6]	C	G	1.369e^-4	0.852	INTRON TM9SF4
2R	9934198	2R_9934198_SNP [dm3] 2R_14046693_SNP [dm6]	T	G	1.390e^-4	0.852	INTRON mam
3R	13682363	3R_13682363_SNP [dm3] 3R_17856641_SNP [dm6]	G	T	1.392e^-4	0.852	INTRON tinc
2R	14645198	2R_14645198_SNP [dm3] 2R_18757693_SNP [dm6]	T	C	1.394e^-4	0.852	SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2R	14645244	2R_14645244_SNP [dm3] 2R_18757739_SNP [dm6]	G	A	1.394e^-4	0.852	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2R	7056322	2R_7056322_SNP [dm3] 2R_11168817_SNP [dm6]	A	G	1.396e^-4	0.852	INTRON shn & 1 other
3L	9897277	3L_9897277_SNP [dm3] 3L_9904177_SNP [dm6]	C	T	1.401e^-4	0.852	INTERGENIC
2R	6564120	2R_6564120_SNP [dm3] 2R_10676615_SNP [dm6]	C	T	1.408e^-4	0.852	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8434174	X_8434174_SNP [dm3] X_8540141_SNP [dm6]	G	A	1.410e^-4	0.852	INTRON Nrg
3R	14175458	3R_14175458_SNP [dm3] 3R_18349736_SNP [dm6]	T	G	1.411e^-4	0.852	INTRON CG15803
3R	5943037	3R_5943037_SNP [dm3] 3R_10117315_SNP [dm6]	A	C	1.411e^-4	0.852	INTRON CG3940
3R	22949117	3R_22949117_SNP [dm3] 3R_27123395_SNP [dm6]	C	T	1.413e^-4	0.852	SYNONYMOUS_CODING CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10232137	3L_10232137_SNP [dm3] 3L_10239037_SNP [dm6]	C	T	1.416e^-4	0.852	INTERGENIC
2R	16563530	2R_16563530_SNP [dm3] 2R_20676025_SNP [dm6]	A	T	1.417e^-4	0.852	INTERGENIC
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	1.419e^-4	0.852	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
X	20024782	X_20024782_SNP [dm3] X_20130749_SNP [dm6]	A	G	1.425e^-4	0.852	UTR_3_PRIME CG42582
3L	550946	3L_550946_SNP [dm3] 3L_550946_SNP [dm6]	C	A	1.426e^-4	0.852	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14478561	2L_14478561_SNP [dm3] 2L_14478561_SNP [dm6]	T	A	1.427e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12209853	2L_12209853_SNP [dm3] 2L_12209853_SNP [dm6]	T	A	1.431e^-4	0.852	SYNONYMOUS_CODING CG31759 INTRON aret
2L	13768040	2L_13768040_SNP [dm3] 2L_13768040_SNP [dm6]	T	A	1.431e^-4	0.852	INTRON TM9SF4
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	1.433e^-4	0.852	UPSTREAM Cbp53E INTERGENIC
2L	14971647	2L_14971647_SNP [dm3] 2L_14971647_SNP [dm6]	C	T	1.439e^-4	0.852	UTR_5_PRIME CG42313
3R	11465516	3R_11465516_SNP [dm3] 3R_15639794_SNP [dm6]	C	T	1.446e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13413672	2L_13413672_SNP [dm3] 2L_13413672_SNP [dm6]	T	G	1.447e^-4	0.852	UTR_3_PRIME CG16848 DOWNSTREAM CG16956
3R	23268666	3R_23268666_SNP [dm3] 3R_27442944_SNP [dm6]	C	T	1.452e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18665040	3R_18665040_INS [dm3] 3R_22839318_INS [dm6]	G	TTAATAA	1.453e^-4	0.852	INTERGENIC
3L	8160222	3L_8160222_SNP [dm3] 3L_8167122_SNP [dm6]	T	G	1.463e^-4	0.852	INTERGENIC
3R	13597497	3R_13597497_SNP [dm3] 3R_17771775_SNP [dm6]	C	A	1.469e^-4	0.852	NON_SYNONYMOUS_CODING CG43102
2L	7495110	2L_7495110_SNP [dm3] 2L_7495110_SNP [dm6]	A	C	1.472e^-4	0.852	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7096851	3R_7096851_SNP [dm3] 3R_11271129_SNP [dm6]	G	A	1.477e^-4	0.852	EXON CR31386
3R	14046390	3R_14046390_SNP [dm3] 3R_18220668_SNP [dm6]	C	T	1.483e^-4	0.852	SYNONYMOUS_CODING CG7988 UTR_5_PRIME CG7183 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	399804	2R_399804_DEL [dm3] 2R_4512299_DEL [dm6]	TCGTTTTTAACGTATGTAGT...	T	1.487e^-4	0.852	INTERGENIC	transposable element FlyBase
3R	14666743	3R_14666743_SNP [dm3] 3R_18841021_SNP [dm6]	T	C	1.497e^-4	0.852	INTRON CG18208
3R	16910041	3R_16910041_SNP [dm3] 3R_21084319_SNP [dm6]	C	T	1.498e^-4	0.852	INTRON RhoGAP93B
3L	17394700	3L_17394700_SNP [dm3] 3L_17401600_SNP [dm6]	T	A	1.498e^-4	0.852	UPSTREAM noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9134529	3R_9134529_SNP [dm3] 3R_13308807_SNP [dm6]	G	A	1.499e^-4	0.852	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
3L	8751097	3L_8751097_SNP [dm3] 3L_8757997_SNP [dm6]	G	A	1.510e^-4	0.852	DOWNSTREAM CG6576 INTRON Fhos
3L	10214114	3L_10214114_SNP [dm3] 3L_10221014_SNP [dm6]	A	G	1.510e^-4	0.852	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
3R	7096859	3R_7096859_SNP [dm3] 3R_11271137_SNP [dm6]	A	G	1.512e^-4	0.852	EXON CR31386
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	1.523e^-4	0.852	INTRON dnr1
3R	10765745	3R_10765745_SNP [dm3] 3R_14940023_SNP [dm6]	C	T	1.524e^-4	0.852	INTERGENIC
2L	4936744	2L_4936744_SNP [dm3] 2L_4936744_SNP [dm6]	G	A	1.530e^-4	0.852	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	7499416	2R_7499416_INS [dm3] 2R_11611911_INS [dm6]	G	GA	1.544e^-4	0.852	INTRON tou	TF binding site BDTNP1_TFBS_dl
3R	10650243	3R_10650243_DEL [dm3] 3R_14824521_DEL [dm6]	AA	A	1.554e^-4	0.852	INTRON btsz
3L	3642145	3L_3642145_SNP [dm3] 3L_3642145_SNP [dm6]	G	A	1.563e^-4	0.852	INTRON dar1
3R	22947316	3R_22947316_SNP [dm3] 3R_27121594_SNP [dm6]	T	C	1.567e^-4	0.852	DOWNSTREAM CG6059 & 1 other INTERGENIC
3L	12821515	3L_12821515_SNP [dm3] 3L_12828415_SNP [dm6]	C	T	1.572e^-4	0.852	UPSTREAM CG10960 INTRON CG10960
3R	17924047	3R_17924047_SNP [dm3] 3R_22098325_SNP [dm6]	C	T	1.576e^-4	0.852	INTRON CG5778
2R	18717698	2R_18717698_SNP [dm3] 2R_22830175_SNP [dm6]	C	T	1.602e^-4	0.852	SYNONYMOUS_CODING CG30272
X	8962323	X_8962323_SNP [dm3] X_9068290_SNP [dm6]	C	A	1.606e^-4	0.852	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16426471	X_16426471_SNP [dm3] X_16532438_SNP [dm6]	T	C	1.610e^-4	0.852	INTRON para
X	10255623	X_10255623_SNP [dm3] X_10361590_SNP [dm6]	G	A	1.610e^-4	0.852	INTRON l_1_G0289
3R	11402208	3R_11402208_INS [dm3] 3R_15576486_INS [dm6]	T	TA	1.611e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	1.614e^-4	0.852	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10925882	3L_10925882_SNP [dm3] 3L_10932782_SNP [dm6]	C	T	1.620e^-4	0.852	INTERGENIC
2R	19719076	2R_19719076_SNP [dm3] 2R_23831553_SNP [dm6]	G	A	1.625e^-4	0.852	INTRON CG5549
2R	16487890	2R_16487890_SNP [dm3] 2R_20600385_SNP [dm6]	A	C	1.633e^-4	0.852	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10360604	3R_10360604_SNP [dm3] 3R_14534882_SNP [dm6]	G	A	1.634e^-4	0.852	INTRON Pde6
3L	9544200	3L_9544200_SNP [dm3] 3L_9551100_SNP [dm6]	G	A	1.653e^-4	0.852	INTRON CG42673
3R	27227237	3R_27227237_SNP [dm3] 3R_31401515_SNP [dm6]	T	G	1.659e^-4	0.852	UTR_3_PRIME Gcn2 DOWNSTREAM CG11337
X	8074514	X_8074514_SNP [dm3] X_8180481_SNP [dm6]	C	G	1.666e^-4	0.852	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	11532843	2R_11532843_SNP [dm3] 2R_15645338_SNP [dm6]	G	C	1.667e^-4	0.852	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2510953	3L_2510953_SNP [dm3] 3L_2510953_SNP [dm6]	T	G	1.669e^-4	0.852	INTRON Spn
3L	3927541	3L_3927541_SNP [dm3] 3L_3927541_SNP [dm6]	T	A	1.673e^-4	0.852	INTRON Eip63F-1
3R	11160926	3R_11160926_SNP [dm3] 3R_15335204_SNP [dm6]	C	T	1.680e^-4	0.852	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3L	10764347	3L_10764347_SNP [dm3] 3L_10771247_SNP [dm6]	T	C	1.682e^-4	0.852	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	14215308	3L_14215308_SNP [dm3] 3L_14222208_SNP [dm6]	T	G	1.685e^-4	0.852	INTRON nuf
2R	19364625	2R_19364625_SNP [dm3] 2R_23477102_SNP [dm6]	C	G	1.688e^-4	0.852	UPSTREAM CG13557 DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
3R	18479510	3R_18479510_SNP [dm3] 3R_22653788_SNP [dm6]	T	C	1.689e^-4	0.852	INTRON CG45058
3L	12821358	3L_12821358_SNP [dm3] 3L_12828258_SNP [dm6]	G	A	1.691e^-4	0.852	UPSTREAM CG10960 INTRON CG10960
3L	11357310	3L_11357310_SNP [dm3] 3L_11364210_SNP [dm6]	G	A	1.708e^-4	0.852	UPSTREAM CR45036 INTRON CG6163
3L	1268218	3L_1268218_SNP [dm3] 3L_1268218_SNP [dm6]	A	G	1.709e^-4	0.852	INTRON CG9134
3L	18052499	3L_18052499_SNP [dm3] 3L_18059399_SNP [dm6]	G	C	1.713e^-4	0.852	NON_SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23522340	3R_23522340_SNP [dm3] 3R_27696618_SNP [dm6]	C	T	1.716e^-4	0.852	UTR_3_PRIME ALiX DOWNSTREAM CG43320
2L	13447473	2L_13447473_SNP [dm3] 2L_13447473_SNP [dm6]	A	C	1.717e^-4	0.852	DOWNSTREAM Hsp60D INTRON CG42784
X	21042552	X_21042552_SNP [dm3] X_21171525_SNP [dm6]	T	C	1.725e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	9464992	3L_9464992_SNP [dm3] 3L_9471892_SNP [dm6]	T	A	1.728e^-4	0.852	SYNONYMOUS_CODING CG44838 INTRON CG44838	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14478391	2L_14478391_SNP [dm3] 2L_14478391_SNP [dm6]	C	T	1.735e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10658747	3R_10658747_SNP [dm3] 3R_14833025_SNP [dm6]	T	C	1.739e^-4	0.852	INTRON btsz
2R	19886570	2R_19886570_SNP [dm3] 2R_23999047_SNP [dm6]	G	T	1.744e^-4	0.852	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
3R	10657240	3R_10657240_SNP [dm3] 3R_14831518_SNP [dm6]	G	A	1.757e^-4	0.852	INTRON btsz
3L	3022584	3L_3022584_SNP [dm3] 3L_3022584_SNP [dm6]	G	A	1.759e^-4	0.852	INTERGENIC
2R	17575723	2R_17575723_SNP [dm3] 2R_21688218_SNP [dm6]	G	A	1.761e^-4	0.852	SYNONYMOUS_CODING CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	17689509	3R_17689509_SNP [dm3] 3R_21863787_SNP [dm6]	G	T	1.764e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12822371	3L_12822371_SNP [dm3] 3L_12829271_SNP [dm6]	G	A	1.766e^-4	0.852	INTRON CG10960
X	7929821	X_7929821_SNP [dm3] X_8035788_SNP [dm6]	A	C	1.767e^-4	0.852	UTR_3_PRIME CG2233
3R	26075786	3R_26075786_SNP [dm3] 3R_30250064_SNP [dm6]	T	C	1.772e^-4	0.852	UPSTREAM CG9682 DOWNSTREAM CG34299 INTRON CG34299	TF binding site mE1_TFBS_inv
3L	3834874	3L_3834874_SNP [dm3] 3L_3834874_SNP [dm6]	A	T	1.774e^-4	0.852	INTRON enc
2R	18495770	2R_18495770_SNP [dm3] 2R_22608265_SNP [dm6]	G	C	1.776e^-4	0.852	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10216966	2R_10216966_SNP [dm3] 2R_14329461_SNP [dm6]	T	A	1.781e^-4	0.852	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3L	17403208	3L_17403208_SNP [dm3] 3L_17410108_SNP [dm6]	A	G	1.781e^-4	0.852	INTRON blot
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	1.784e^-4	0.852	INTERGENIC
3R	20918604	3R_20918604_SNP [dm3] 3R_25092882_SNP [dm6]	A	T	1.785e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17723978	2L_17723978_SNP [dm3] 2L_17723978_SNP [dm6]	A	T	1.786e^-4	0.852	INTRON CadN
3L	21618137	3L_21618137_SNP [dm3] 3L_21625037_SNP [dm6]	C	A	1.788e^-4	0.852	UPSTREAM CG11306 INTRON CG7166
3R	25219435	3R_25219435_SNP [dm3] 3R_29393713_SNP [dm6]	C	T	1.805e^-4	0.852	INTRON Ptp99A
2L	18622039	2L_18622039_SNP [dm3] 2L_18622039_SNP [dm6]	G	A	1.810e^-4	0.852	INTRON MESR3
3R	15372458	3R_15372458_SNP [dm3] 3R_19546736_SNP [dm6]	A	T	1.811e^-4	0.852	INTRON Dys
3R	13716523	3R_13716523_SNP [dm3] 3R_17890801_SNP [dm6]	T	G	1.814e^-4	0.852	SPLICE_SITE_REGION Rim INTRON Rim
3R	10661754	3R_10661754_SNP [dm3] 3R_14836032_SNP [dm6]	C	A	1.815e^-4	0.852	INTRON btsz
X	13302442	X_13302442_SNP [dm3] X_13408409_SNP [dm6]	A	G	1.817e^-4	0.852	SYNONYMOUS_CODING GstT4 DOWNSTREAM CG1998
3L	9888271	3L_9888271_SNP [dm3] 3L_9895171_SNP [dm6]	G	A	1.822e^-4	0.852	UTR_3_PRIME CG6707 UPSTREAM CG14164 & 1 other
3R	23532627	3R_23532627_SNP [dm3] 3R_27706905_SNP [dm6]	T	C	1.823e^-4	0.852	UPSTREAM CG12877 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10185439	2L_10185439_SNP [dm3] 2L_10185439_SNP [dm6]	C	T	1.826e^-4	0.852	INTRON Sur	TF binding site mE1_TFBS_inv
3R	13026887	3R_13026887_SNP [dm3] 3R_17201165_SNP [dm6]	C	T	1.831e^-4	0.852	INTRON Mur89F
2L	3271417	2L_3271417_SNP [dm3] 2L_3271417_SNP [dm6]	A	G	1.833e^-4	0.852	NON_SYNONYMOUS_CODING CG3347
2L	4934868	2L_4934868_SNP [dm3] 2L_4934868_SNP [dm6]	A	G	1.833e^-4	0.852	SYNONYMOUS_CODING hoe2
3R	22235978	3R_22235978_SNP [dm3] 3R_26410256_SNP [dm6]	C	T	1.839e^-4	0.852	INTERGENIC
X	21042331	X_21042331_SNP [dm3] X_21171304_SNP [dm6]	C	T	1.842e^-4	0.852	INTERGENIC	transposable element FlyBase
3R	18479550	3R_18479550_SNP [dm3] 3R_22653828_SNP [dm6]	C	A	1.851e^-4	0.852	INTRON CG45058
3R	19736342	3R_19736342_SNP [dm3] 3R_23910620_SNP [dm6]	T	C	1.858e^-4	0.852	INTRON sba
2L	10545169	2L_10545169_SNP [dm3] 2L_10545169_SNP [dm6]	C	T	1.859e^-4	0.852	UTR_5_PRIME Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.861e^-4	0.852	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13717429	3R_13717429_SNP [dm3] 3R_17891707_SNP [dm6]	T	A	1.866e^-4	0.852	INTRON Rim
2L	17723749	2L_17723749_SNP [dm3] 2L_17723749_SNP [dm6]	T	C	1.869e^-4	0.852	INTRON CadN
3R	10660612	3R_10660612_SNP [dm3] 3R_14834890_SNP [dm6]	A	C	1.874e^-4	0.852	INTRON btsz
3L	17401332	3L_17401332_SNP [dm3] 3L_17408232_SNP [dm6]	A	C	1.882e^-4	0.852	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18791112	2L_18791112_DEL [dm3] 2L_18791112_DEL [dm6]	AGGAAGC	A	1.890e^-4	0.852	INTRON ham
X	6878999	X_6878999_SNP [dm3] X_6984966_SNP [dm6]	C	T	1.892e^-4	0.852	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	8415694	X_8415694_SNP [dm3] X_8521661_SNP [dm6]	T	C	1.893e^-4	0.852	INTRON Nrg
X	21102342	X_21102342_SNP [dm3] X_21231315_SNP [dm6]	A	T	1.895e^-4	0.852	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	17401316	3L_17401316_SNP [dm3] 3L_17408216_SNP [dm6]	T	A	1.897e^-4	0.852	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10353546	2R_10353546_SNP [dm3] 2R_14466041_SNP [dm6]	G	A	1.922e^-4	0.852	DOWNSTREAM Oaz INTERGENIC
3R	13718347	3R_13718347_SNP [dm3] 3R_17892625_SNP [dm6]	A	C	1.934e^-4	0.852	SYNONYMOUS_CODING Rim INTRON Rim
3L	8772937	3L_8772937_SNP [dm3] 3L_8779837_SNP [dm6]	C	A	1.942e^-4	0.852	INTRON Fhos
3R	13253822	3R_13253822_SNP [dm3] 3R_17428100_SNP [dm6]	G	A	1.943e^-4	0.852	INTRON CG5873	TF binding site BDTNP1_TFBS_twi
3R	10504797	3R_10504797_SNP [dm3] 3R_14679075_SNP [dm6]	C	A	1.952e^-4	0.852	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5145535	3L_5145535_SNP [dm3] 3L_5152435_SNP [dm6]	T	C	1.972e^-4	0.852	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14141794	3R_14141794_SNP [dm3] 3R_18316072_SNP [dm6]	T	C	1.973e^-4	0.852	DOWNSTREAM CG31235 INTERGENIC
3L	4510238	3L_4510238_SNP [dm3] 3L_4510238_SNP [dm6]	T	A	1.976e^-4	0.852	DOWNSTREAM Tie INTERGENIC
3R	23326896	3R_23326896_SNP [dm3] 3R_27501174_SNP [dm6]	C	T	1.977e^-4	0.852	DOWNSTREAM CG43139 & 1 other INTERGENIC
3R	10658746	3R_10658746_SNP [dm3] 3R_14833024_SNP [dm6]	T	G	1.979e^-4	0.852	INTRON btsz
2R	399831	2R_399831_INS [dm3] 2R_4512326_INS [dm6]	T	TATAGGTATAT...	1.993e^-4	0.852	INTERGENIC	transposable element FlyBase
3R	13696298	3R_13696298_SNP [dm3] 3R_17870576_SNP [dm6]	T	C	1.994e^-4	0.852	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2L	22011011	2L_22011011_INS [dm3] 2L_22011011_INS [dm6]	A	ACACCAATTACCAATGA...	1.997e^-4	0.852	INTERGENIC
3R	10360606	3R_10360606_SNP [dm3] 3R_14534884_SNP [dm6]	C	A	2.001e^-4	0.852	INTRON Pde6
3L	18090569	3L_18090569_DEL [dm3] 3L_18097469_DEL [dm6]	GCCCCAAAATACCAAAATG...	G	2.010e^-4	0.852	INTRON CG13698
3R	7096940	3R_7096940_INS [dm3] 3R_11271218_INS [dm6]	T	TGAACTTT	2.015e^-4	0.852	EXON CR31386
3R	23252573	3R_23252573_SNP [dm3] 3R_27426851_SNP [dm6]	C	T	2.022e^-4	0.852	INTRON side
X	6481542	X_6481542_DEL [dm3] X_6587509_DEL [dm6]	AAAA	T	2.023e^-4	0.852	INTRON CG34417
X	14217821	X_14217821_SNP [dm3] X_14323788_SNP [dm6]	G	C	2.027e^-4	0.852	INTRON dpr8
3R	11595370	3R_11595370_SNP [dm3] 3R_15769648_SNP [dm6]	A	C	2.027e^-4	0.852	INTERGENIC
3R	19085928	3R_19085928_SNP [dm3] 3R_23260206_SNP [dm6]	C	A	2.028e^-4	0.852	DOWNSTREAM orb INTRON CG13827	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2277276	2L_2277276_SNP [dm3] 2L_2277276_SNP [dm6]	A	G	2.029e^-4	0.852	DOWNSTREAM CR43753 INTRON CR43753
3R	13713699	3R_13713699_SNP [dm3] 3R_17887977_SNP [dm6]	A	G	2.031e^-4	0.852	INTRON Rim
X	10849652	X_10849652_SNP [dm3] X_10955619_SNP [dm6]	A	C	2.037e^-4	0.852	SYNONYMOUS_CODING Myo10A INTRON Myo10A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9896874	3L_9896874_SNP [dm3] 3L_9903774_SNP [dm6]	A	T	2.038e^-4	0.852	DOWNSTREAM nudE INTERGENIC
2L	7762175	2L_7762175_SNP [dm3] 2L_7762175_SNP [dm6]	A	T	2.045e^-4	0.852	INTRON CG7196
3R	11103872	3R_11103872_SNP [dm3] 3R_15278150_SNP [dm6]	T	C	2.047e^-4	0.852	UTR_3_PRIME l_3_neo43 UPSTREAM MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18495768	2R_18495768_SNP [dm3] 2R_22608263_SNP [dm6]	A	C	2.050e^-4	0.852	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	316928	2L_316928_SNP [dm3] 2L_316928_SNP [dm6]	G	T	2.057e^-4	0.852	INTRON Plc21C
3R	9417903	3R_9417903_SNP [dm3] 3R_13592181_SNP [dm6]	C	T	2.063e^-4	0.852	UTR_3_PRIME CG14369
3R	21983206	3R_21983206_SNP [dm3] 3R_26157484_SNP [dm6]	T	C	2.074e^-4	0.852	INTERGENIC
X	21042142	X_21042142_SNP [dm3] X_21171115_SNP [dm6]	G	A	2.080e^-4	0.852	INTERGENIC	transposable element FlyBase
X	9754947	X_9754947_SNP [dm3] X_9860914_SNP [dm6]	A	G	2.080e^-4	0.852	INTERGENIC
2L	8448217	2L_8448217_SNP [dm3] 2L_8448217_SNP [dm6]	T	C	2.082e^-4	0.852	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
2L	1190156	2L_1190156_SNP [dm3] 2L_1190156_SNP [dm6]	C	T	2.089e^-4	0.852	INTRON CG5001
2L	2237300	2L_2237300_SNP [dm3] 2L_2237300_SNP [dm6]	G	A	2.089e^-4	0.852	SYNONYMOUS_CODING Tengl3 UPSTREAM Sec24CD DOWNSTREAM CR44115
3R	18665042	3R_18665042_SNP [dm3] 3R_22839320_SNP [dm6]	T	G	2.103e^-4	0.852	INTERGENIC
2R	19882239	2R_19882239_SNP [dm3] 2R_23994716_SNP [dm6]	T	G	2.114e^-4	0.852	UTR_5_PRIME CG3860 DOWNSTREAM Unc-89
3R	7096881	3R_7096881_SNP [dm3] 3R_11271159_SNP [dm6]	A	T	2.131e^-4	0.852	EXON CR31386
3R	7096991	3R_7096991_SNP [dm3] 3R_11271269_SNP [dm6]	C	T	2.131e^-4	0.852	EXON CR31386
3L	15525913	3L_15525913_SNP [dm3] 3L_15532813_SNP [dm6]	T	C	2.133e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19815257	3R_19815257_SNP [dm3] 3R_23989535_SNP [dm6]	T	C	2.133e^-4	0.852	SYNONYMOUS_CODING CG13604 DOWNSTREAM CG5902
3R	12546817	3R_12546817_SNP [dm3] 3R_16721095_SNP [dm6]	A	G	2.136e^-4	0.852	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	12210129	2L_12210129_SNP [dm3] 2L_12210129_SNP [dm6]	T	G	2.141e^-4	0.852	DOWNSTREAM CG31759 INTRON aret
3R	25525099	3R_25525099_SNP [dm3] 3R_29699377_SNP [dm6]	A	G	2.142e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16873231	2R_16873231_SNP [dm3] 2R_20985726_SNP [dm6]	A	G	2.154e^-4	0.852	SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	2.156e^-4	0.852	UTR_3_PRIME CG31759 INTRON aret
3R	14141709	3R_14141709_SNP [dm3] 3R_18315987_SNP [dm6]	A	C	2.161e^-4	0.852	DOWNSTREAM CG31235 INTERGENIC
3L	5231661	3L_5231661_SNP [dm3] 3L_5238561_SNP [dm6]	C	T	2.169e^-4	0.852	INTRON shep
3L	10566031	3L_10566031_SNP [dm3] 3L_10572931_SNP [dm6]	T	A	2.169e^-4	0.852	INTRON A2bp1
X	6479202	X_6479202_DEL [dm3] X_6585169_DEL [dm6]	CAC	C	2.170e^-4	0.852	UTR_3_PRIME CG34417 INTRON CG34417
2L	21898522	2L_21898522_SNP [dm3] 2L_21898522_SNP [dm6]	T	C	2.172e^-4	0.852	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	17723771	2L_17723771_SNP [dm3] 2L_17723771_SNP [dm6]	G	A	2.174e^-4	0.852	INTRON CadN
3R	14509173	3R_14509173_SNP [dm3] 3R_18683451_SNP [dm6]	G	A	2.176e^-4	0.852	INTRON CG7708	TF binding site mE1_TFBS_cad
3L	17928691	3L_17928691_SNP [dm3] 3L_17935591_SNP [dm6]	G	C	2.176e^-4	0.852	DOWNSTREAM CG43173 INTRON CG43174
3L	2726104	3L_2726104_SNP [dm3] 3L_2726104_SNP [dm6]	G	T	2.178e^-4	0.852	INTRON Mrtf
X	19765726	X_19765726_SNP [dm3] X_19871693_SNP [dm6]	G	T	2.180e^-4	0.852	INTRON Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	13061671	X_13061671_SNP [dm3] X_13167638_SNP [dm6]	G	A	2.186e^-4	0.852	SYNONYMOUS_CODING CG34411
3R	7096882	3R_7096882_SNP [dm3] 3R_11271160_SNP [dm6]	C	A	2.209e^-4	0.852	EXON CR31386
3L	17689210	3L_17689210_SNP [dm3] 3L_17696110_SNP [dm6]	G	T	2.219e^-4	0.852	INTRON Ccn
3R	18496136	3R_18496136_SNP [dm3] 3R_22670414_SNP [dm6]	G	T	2.222e^-4	0.852	INTRON CG45058
2L	15026002	2L_15026002_SNP [dm3] 2L_15026002_SNP [dm6]	G	A	2.225e^-4	0.852	SYNONYMOUS_CODING GABA-B-R1 UPSTREAM CG33310	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19085839	3R_19085839_SNP [dm3] 3R_23260117_SNP [dm6]	T	C	2.229e^-4	0.852	SYNONYMOUS_CODING CG13827 DOWNSTREAM orb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15244233	3R_15244233_SNP [dm3] 3R_19418511_SNP [dm6]	A	G	2.249e^-4	0.852	INTRON CG31221
3L	2726322	3L_2726322_SNP [dm3] 3L_2726322_SNP [dm6]	A	G	2.252e^-4	0.852	INTRON Mrtf
3L	4510231	3L_4510231_SNP [dm3] 3L_4510231_SNP [dm6]	A	G	2.256e^-4	0.852	DOWNSTREAM Tie INTERGENIC
3L	18051773	3L_18051773_SNP [dm3] 3L_18058673_SNP [dm6]	C	T	2.256e^-4	0.852	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22037267	3R_22037267_SNP [dm3] 3R_26211545_SNP [dm6]	G	A	2.267e^-4	0.852	INTERGENIC
2R	9965556	2R_9965556_SNP [dm3] 2R_14078051_SNP [dm6]	T	C	2.269e^-4	0.852	INTRON Prosap
3R	20931584	3R_20931584_SNP [dm3] 3R_25105862_SNP [dm6]	G	A	2.269e^-4	0.852	SYNONYMOUS_CODING CG34027
2L	7523900	2L_7523900_SNP [dm3] 2L_7523900_SNP [dm6]	T	A	2.273e^-4	0.852	INTRON RapGAP1
3R	13589972	3R_13589972_SNP [dm3] 3R_17764250_SNP [dm6]	C	T	2.276e^-4	0.852	INTERGENIC
2R	6593913	2R_6593913_DEL [dm3] 2R_10706408_DEL [dm6]	CAC	C	2.279e^-4	0.852	UTR_5_PRIME stan	TF binding site mE1_TFBS_cad
3R	16570925	3R_16570925_SNP [dm3] 3R_20745203_SNP [dm6]	G	A	2.286e^-4	0.852	NON_SYNONYMOUS_CODING CG31200 SPLICE_SITE_REGION CG31200 INTRON CG42322
3R	10648895	3R_10648895_DEL [dm3] 3R_14823173_DEL [dm6]	ATGAGGGAG	A	2.291e^-4	0.852	INTRON btsz	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7491734	2L_7491734_SNP [dm3] 2L_7491734_SNP [dm6]	A	T	2.300e^-4	0.852	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	5239391	2L_5239391_SNP [dm3] 2L_5239391_SNP [dm6]	A	T	2.313e^-4	0.852	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17965502	3R_17965502_SNP [dm3] 3R_22139780_SNP [dm6]	T	A	2.316e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1128114	2L_1128114_DEL [dm3] 2L_1128114_DEL [dm6]	CTATGGCGC	C	2.319e^-4	0.852	SPLICE_SITE_REGION Pino INTRON Pino	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13146120	2L_13146120_SNP [dm3] 2L_13146120_SNP [dm6]	G	A	2.325e^-4	0.852	UPSTREAM CR44199 INTERGENIC
3R	19322763	3R_19322763_SNP [dm3] 3R_23497041_SNP [dm6]	T	A	2.331e^-4	0.852	INTERGENIC
3L	5231686	3L_5231686_DEL [dm3] 3L_5238586_DEL [dm6]	GCC	G	2.338e^-4	0.852	INTRON shep
3L	5231689	3L_5231689_DEL [dm3] 3L_5238589_DEL [dm6]	GTAAAAATGCGA...	G	2.338e^-4	0.852	INTRON shep
X	12085768	X_12085768_DEL [dm3] X_12191735_DEL [dm6]	TTC	CA	2.345e^-4	0.852	INTRON Ten-a
2R	16313474	2R_16313474_SNP [dm3] 2R_20425969_SNP [dm6]	G	T	2.350e^-4	0.852	INTRON CG12484
3R	23252659	3R_23252659_SNP [dm3] 3R_27426937_SNP [dm6]	T	A	2.352e^-4	0.852	INTRON side
2L	2258011	2L_2258011_SNP [dm3] 2L_2258011_SNP [dm6]	A	G	2.354e^-4	0.852	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5062641	2L_5062641_SNP [dm3] 2L_5062641_SNP [dm6]	T	C	2.361e^-4	0.852	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_HSA
3L	3525176	3L_3525176_SNP [dm3] 3L_3525176_SNP [dm6]	C	A	2.369e^-4	0.852	INTRON Eip63E
3L	3525177	3L_3525177_SNP [dm3] 3L_3525177_SNP [dm6]	A	C	2.369e^-4	0.852	INTRON Eip63E
3L	3525181	3L_3525181_SNP [dm3] 3L_3525181_SNP [dm6]	T	G	2.369e^-4	0.852	INTRON Eip63E
3L	3525187	3L_3525187_SNP [dm3] 3L_3525187_SNP [dm6]	T	C	2.369e^-4	0.852	INTRON Eip63E
3R	14666519	3R_14666519_SNP [dm3] 3R_18840797_SNP [dm6]	T	A	2.374e^-4	0.852	INTRON CG18208
X	7758927	X_7758927_INS [dm3] X_7864894_INS [dm6]	T	TT	2.380e^-4	0.852	DOWNSTREAM Ir7b INTERGENIC
2L	13745574	2L_13745574_SNP [dm3] 2L_13745574_SNP [dm6]	A	G	2.391e^-4	0.852	INTERGENIC
3L	8160357	3L_8160357_SNP [dm3] 3L_8167257_SNP [dm6]	A	G	2.398e^-4	0.852	INTERGENIC
3L	16965216	3L_16965216_SNP [dm3] 3L_16972116_SNP [dm6]	G	A	2.400e^-4	0.852	INTRON Exn
2L	18766042	2L_18766042_SNP [dm3] 2L_18766042_SNP [dm6]	G	T	2.405e^-4	0.852	INTRON ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9972907	2R_9972907_SNP [dm3] 2R_14085402_SNP [dm6]	G	A	2.411e^-4	0.852	INTRON Prosap
3L	15863160	3L_15863160_SNP [dm3] 3L_15870060_SNP [dm6]	C	T	2.415e^-4	0.852	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
2L	333603	2L_333603_SNP [dm3] 2L_333603_SNP [dm6]	G	C	2.421e^-4	0.852	INTRON Plc21C	TF binding site mE1_TFBS_cad
3R	6918060	3R_6918060_SNP [dm3] 3R_11092338_SNP [dm6]	A	T	2.422e^-4	0.852	INTERGENIC
3L	17980444	3L_17980444_INS [dm3] 3L_17987344_INS [dm6]	A	AC	2.432e^-4	0.852	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7096892	3R_7096892_SNP [dm3] 3R_11271170_SNP [dm6]	A	T	2.447e^-4	0.852	EXON CR31386
2L	3547607	2L_3547607_SNP [dm3] 2L_3547607_SNP [dm6]	A	G	2.474e^-4	0.852	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18495991	2R_18495991_SNP [dm3] 2R_22608486_SNP [dm6]	G	A	2.474e^-4	0.852	UTR_5_PRIME Vps20 UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175c & 3 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12713853	3R_12713853_SNP [dm3] 3R_16888131_SNP [dm6]	T	C	2.475e^-4	0.852	INTRON iab-8
3R	11257351	3R_11257351_SNP [dm3] 3R_15431629_SNP [dm6]	A	T	2.483e^-4	0.852	INTRON CG6118
3R	10651513	3R_10651513_SNP [dm3] 3R_14825791_SNP [dm6]	C	A	2.485e^-4	0.852	NON_SYNONYMOUS_CODING btsz
3R	20848788	3R_20848788_SNP [dm3] 3R_25023066_SNP [dm6]	G	T	2.490e^-4	0.852	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2R	8873076	2R_8873076_SNP [dm3] 2R_12985571_SNP [dm6]	G	T	2.493e^-4	0.852	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	2263007	2L_2263007_SNP [dm3] 2L_2263007_SNP [dm6]	T	A	2.495e^-4	0.852	UPSTREAM CG4270 INTERGENIC
3R	22938002	3R_22938002_SNP [dm3] 3R_27112280_SNP [dm6]	G	A	2.496e^-4	0.852	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	2725843	3L_2725843_SNP [dm3] 3L_2725843_SNP [dm6]	G	A	2.497e^-4	0.852	INTRON Mrtf
3R	22939719	3R_22939719_SNP [dm3] 3R_27113997_SNP [dm6]	G	A	2.503e^-4	0.852	SYNONYMOUS_CODING CG5815
2L	4109437	2L_4109437_SNP [dm3] 2L_4109437_SNP [dm6]	C	T	2.506e^-4	0.852	INTRON ed
3R	15895297	3R_15895297_SNP [dm3] 3R_20069575_SNP [dm6]	T	C	2.508e^-4	0.852	INTERGENIC
2R	15182423	2R_15182423_SNP [dm3] 2R_19294918_SNP [dm6]	G	C	2.514e^-4	0.852	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17976748	3L_17976748_SNP [dm3] 3L_17983648_SNP [dm6]	C	T	2.522e^-4	0.852	INTRON Eip75B
3L	17976833	3L_17976833_SNP [dm3] 3L_17983733_SNP [dm6]	C	A	2.522e^-4	0.852	INTRON Eip75B
3R	7094892	3R_7094892_SNP [dm3] 3R_11269170_SNP [dm6]	A	T	2.522e^-4	0.852	DOWNSTREAM CR31386 INTERGENIC
3R	22949111	3R_22949111_SNP [dm3] 3R_27123389_SNP [dm6]	A	G	2.524e^-4	0.852	SYNONYMOUS_CODING CG6059	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14141699	3R_14141699_SNP [dm3] 3R_18315977_SNP [dm6]	G	A	2.533e^-4	0.852	DOWNSTREAM CG31235 INTERGENIC
3R	11097012	3R_11097012_SNP [dm3] 3R_15271290_SNP [dm6]	G	A	2.538e^-4	0.852	NON_SYNONYMOUS_CODING Cp190 DOWNSTREAM Zip88E	TF binding site mE1_TFBS_sens
3L	18694749	3L_18694749_SNP [dm3] 3L_18701649_SNP [dm6]	T	A	2.541e^-4	0.852	INTERGENIC
3L	3525186	3L_3525186_SNP [dm3] 3L_3525186_SNP [dm6]	C	A	2.542e^-4	0.852	INTRON Eip63E
3R	10651838	3R_10651838_SNP [dm3] 3R_14826116_SNP [dm6]	G	C	2.547e^-4	0.852	SYNONYMOUS_CODING btsz
2L	9666532	2L_9666532_SNP [dm3] 2L_9666532_SNP [dm6]	C	T	2.548e^-4	0.852	INTERGENIC
3R	9146097	3R_9146097_SNP [dm3] 3R_13320375_SNP [dm6]	G	C	2.552e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17965461	3R_17965461_SNP [dm3] 3R_22139739_SNP [dm6]	G	A	2.563e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17965564	3R_17965564_SNP [dm3] 3R_22139842_SNP [dm6]	C	G	2.563e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19205605	X_19205605_SNP [dm3] X_19311572_SNP [dm6]	G	A	2.566e^-4	0.852	SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
2R	17318802	2R_17318802_SNP [dm3] 2R_21431297_SNP [dm6]	C	T	2.570e^-4	0.852	INTRON Sdc
3L	14106779	3L_14106779_SNP [dm3] 3L_14113679_SNP [dm6]	C	T	2.574e^-4	0.852	INTRON Sox21b
3R	13589843	3R_13589843_SNP [dm3] 3R_17764121_SNP [dm6]	A	G	2.574e^-4	0.852	UPSTREAM TyrR INTERGENIC
3R	21367797	3R_21367797_SNP [dm3] 3R_25542075_SNP [dm6]	C	A	2.575e^-4	0.852	INTRON msi
3R	25683224	3R_25683224_SNP [dm3] 3R_29857502_SNP [dm6]	A	T	2.580e^-4	0.852	UPSTREAM dgt1 DOWNSTREAM CG7824 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
3R	25683225	3R_25683225_SNP [dm3] 3R_29857503_SNP [dm6]	G	A	2.580e^-4	0.852	UPSTREAM dgt1 DOWNSTREAM CG7824 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
3L	11488657	3L_11488657_SNP [dm3] 3L_11495557_SNP [dm6]	C	A	2.586e^-4	0.852	UTR_3_PRIME chrb	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	13232326	2L_13232326_SNP [dm3] 2L_13232326_SNP [dm6]	T	C	2.587e^-4	0.852	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14454530	X_14454530_SNP [dm3] X_14560497_SNP [dm6]	T	C	2.588e^-4	0.852	INTERGENIC
3R	13592323	3R_13592323_SNP [dm3] 3R_17766601_SNP [dm6]	C	A	2.592e^-4	0.852	INTERGENIC
2L	15904566	2L_15904566_SNP [dm3] 2L_15904566_SNP [dm6]	G	A	2.597e^-4	0.852	DOWNSTREAM beat-Ib INTERGENIC
3R	17965475	3R_17965475_DEL [dm3] 3R_22139753_DEL [dm6]	TAGTTGGGC	T	2.599e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9611520	3R_9611520_SNP [dm3] 3R_13785798_SNP [dm6]	T	G	2.599e^-4	0.852	DOWNSTREAM CR45590 & 1 other INTERGENIC
3L	3525165	3L_3525165_SNP [dm3] 3L_3525165_SNP [dm6]	G	T	2.600e^-4	0.852	INTRON Eip63E
2L	3889905	2L_3889905_SNP [dm3] 2L_3889905_SNP [dm6]	C	T	2.603e^-4	0.852	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	10746584	2L_10746584_SNP [dm3] 2L_10746584_SNP [dm6]	G	A	2.604e^-4	0.852	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
3L	3834899	3L_3834899_SNP [dm3] 3L_3834899_SNP [dm6]	C	A	2.606e^-4	0.852	INTRON enc
2L	14062138	2L_14062138_SNP [dm3] 2L_14062138_SNP [dm6]	C	T	2.608e^-4	0.852	INTRON nAChRalpha5
2R	16345308	2R_16345308_SNP [dm3] 2R_20457803_SNP [dm6]	C	T	2.611e^-4	0.852	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	5302080	2L_5302080_INS [dm3] 2L_5302080_INS [dm6]	T	TGAAGCCTGACGTGTTTAAG...	2.626e^-4	0.852	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13761411	3R_13761411_SNP [dm3] 3R_17935689_SNP [dm6]	A	T	2.628e^-4	0.852	INTRON cpo
3R	20848783	3R_20848783_SNP [dm3] 3R_25023061_SNP [dm6]	A	T	2.635e^-4	0.852	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	21341184	3R_21341184_SNP [dm3] 3R_25515462_SNP [dm6]	T	C	2.638e^-4	0.852	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25806545	3R_25806545_SNP [dm3] 3R_29980823_SNP [dm6]	A	G	2.644e^-4	0.852	INTERGENIC
3L	4692436	3L_4692436_SNP [dm3] 3L_4692436_SNP [dm6]	G	T	2.646e^-4	0.852	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17965541	3R_17965541_SNP [dm3] 3R_22139819_SNP [dm6]	G	A	2.655e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12376691	X_12376691_INS [dm3] X_12482658_INS [dm6]	T	TT	2.659e^-4	0.852	INTERGENIC
3L	7599415	3L_7599415_SNP [dm3] 3L_7606315_SNP [dm6]	A	T	2.662e^-4	0.852	INTRON CG33275
3L	9899923	3L_9899923_SNP [dm3] 3L_9906823_SNP [dm6]	A	T	2.669e^-4	0.852	INTERGENIC
2R	18383370	2R_18383370_SNP [dm3] 2R_22495865_SNP [dm6]	A	G	2.670e^-4	0.852	UTR_3_PRIME px DOWNSTREAM px
3L	23993445	3L_23993445_SNP [dm3] 3L_24000345_SNP [dm6]	T	C	2.678e^-4	0.852	INTERGENIC
X	4587468	X_4587468_SNP [dm3] X_4693435_SNP [dm6]	G	A	2.682e^-4	0.852	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16064167	3R_16064167_SNP [dm3] 3R_20238445_SNP [dm6]	G	T	2.694e^-4	0.852	INTRON Nlg4
2R	18727927	2R_18727927_SNP [dm3] 2R_22840404_SNP [dm6]	G	A	2.698e^-4	0.852	UPSTREAM CG9826 INTERGENIC
3L	12240354	3L_12240354_SNP [dm3] 3L_12247254_SNP [dm6]	A	G	2.706e^-4	0.852	INTRON app
2R	14099970	2R_14099970_SNP [dm3] 2R_18212465_SNP [dm6]	T	A	2.708e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5098247	3L_5098247_SNP [dm3] 3L_5098247_SNP [dm6]	G	A	2.711e^-4	0.852	DOWNSTREAM CR34047 INTERGENIC
3L	16965222	3L_16965222_SNP [dm3] 3L_16972122_SNP [dm6]	A	G	2.712e^-4	0.852	INTRON Exn
X	8415682	X_8415682_SNP [dm3] X_8521649_SNP [dm6]	G	A	2.719e^-4	0.852	INTRON Nrg
2L	5903746	2L_5903746_SNP [dm3] 2L_5903746_SNP [dm6]	G	A	2.719e^-4	0.852	SYNONYMOUS_CODING CG9021	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16862378	X_16862378_SNP [dm3] X_16968345_SNP [dm6]	C	T	2.721e^-4	0.852	DOWNSTREAM CG45002 INTRON CG9086	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2739055	2L_2739055_SNP [dm3] 2L_2739055_SNP [dm6]	G	A	2.728e^-4	0.852	UPSTREAM Hrs INTRON CG31689
3L	2824213	3L_2824213_SNP [dm3] 3L_2824213_SNP [dm6]	C	T	2.730e^-4	0.852	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16061056	3L_16061056_SNP [dm3] 3L_16067956_SNP [dm6]	A	C	2.734e^-4	0.852	INTRON Mbs	TF binding site mE1_TFBS_cad
2L	3492145	2L_3492145_SNP [dm3] 2L_3492145_SNP [dm6]	G	A	2.742e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10856640	3L_10856640_SNP [dm3] 3L_10863540_SNP [dm6]	T	C	2.744e^-4	0.852	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
X	6392659	X_6392659_INS [dm3] X_6498626_INS [dm6]	G	GGGGAGAAAGTG...	2.752e^-4	0.852	INTRON CG42340
3R	1611375	3R_1611375_SNP [dm3] 3R_5785653_SNP [dm6]	T	C	2.761e^-4	0.852	SYNONYMOUS_CODING kat-60L1	TF binding site mE1_TFBS_chinmo
2L	14905923	2L_14905923_SNP [dm3] 2L_14905923_SNP [dm6]	T	G	2.767e^-4	0.852	INTERGENIC
3L	567487	3L_567487_SNP [dm3] 3L_567487_SNP [dm6]	G	T	2.769e^-4	0.852	INTRON hipk
X	21048622	X_21048622_SNP [dm3] X_21177595_SNP [dm6]	A	G	2.778e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	14100005	2R_14100005_SNP [dm3] 2R_18212500_SNP [dm6]	A	T	2.779e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18889247	2R_18889247_SNP [dm3] 2R_23001724_SNP [dm6]	T	C	2.781e^-4	0.852	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	7096875	3R_7096875_SNP [dm3] 3R_11271153_SNP [dm6]	G	T	2.789e^-4	0.852	EXON CR31386
3R	11366703	3R_11366703_SNP [dm3] 3R_15540981_SNP [dm6]	G	A	2.789e^-4	0.852	INTRON CG18519	TF binding site mE1_TFBS_chinmo
3L	14139029	3L_14139029_SNP [dm3] 3L_14145929_SNP [dm6]	G	A	2.791e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19200067	3L_19200067_SNP [dm3] 3L_19206967_SNP [dm6]	C	T	2.791e^-4	0.852	INTRON fz2
3L	7865777	3L_7865777_SNP [dm3] 3L_7872677_SNP [dm6]	A	G	2.793e^-4	0.852	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	5714087	2R_5714087_SNP [dm3] 2R_9826582_SNP [dm6]	A	C	2.793e^-4	0.852	SPLICE_SITE_DONOR dila NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4511204	3L_4511204_SNP [dm3] 3L_4511204_SNP [dm6]	C	T	2.794e^-4	0.852	UTR_3_PRIME Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	2473379	3R_2473379_SNP [dm3] 3R_6647657_SNP [dm6]	A	T	2.799e^-4	0.852	SPLICE_SITE_REGION Taf1 INTRON Taf1
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	2.812e^-4	0.852	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
2R	414921	2R_414921_SNP [dm3] 2R_4527416_SNP [dm6]	A	T	2.814e^-4	0.852	INTERGENIC	transposable element FlyBase
2L	2258020	2L_2258020_SNP [dm3] 2L_2258020_SNP [dm6]	A	T	2.816e^-4	0.852	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18702532	3L_18702532_SNP [dm3] 3L_18709432_SNP [dm6]	A	G	2.818e^-4	0.852	DOWNSTREAM CR44674 INTERGENIC
3L	17401310	3L_17401310_SNP [dm3] 3L_17408210_SNP [dm6]	C	A	2.818e^-4	0.852	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	7151023	X_7151023_SNP [dm3] X_7256990_SNP [dm6]	T	C	2.822e^-4	0.852	INTRON CR44357	TF binding site mE1_TFBS_HSA
3R	11161151	3R_11161151_SNP [dm3] 3R_15335429_SNP [dm6]	G	A	2.832e^-4	0.852	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_sens
3L	15837750	3L_15837750_SNP [dm3] 3L_15844650_SNP [dm6]	G	T	2.833e^-4	0.852	UPSTREAM CG32150 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17683581	3R_17683581_SNP [dm3] 3R_21857859_SNP [dm6]	A	T	2.835e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	7094573	3R_7094573_SNP [dm3] 3R_11268851_SNP [dm6]	G	A	2.837e^-4	0.852	DOWNSTREAM CR31386 INTERGENIC
3R	17965505	3R_17965505_DEL [dm3] 3R_22139783_DEL [dm6]	TTTAGCA	T	2.843e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17965542	3R_17965542_SNP [dm3] 3R_22139820_SNP [dm6]	A	T	2.843e^-4	0.852	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1268249	3L_1268249_SNP [dm3] 3L_1268249_SNP [dm6]	T	G	2.845e^-4	0.852	INTRON CG9134
3R	11440319	3R_11440319_SNP [dm3] 3R_15614597_SNP [dm6]	T	C	2.849e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	6110226	2R_6110226_SNP [dm3] 2R_10222721_SNP [dm6]	T	C	2.852e^-4	0.852	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3R	18664693	3R_18664693_SNP [dm3] 3R_22838971_SNP [dm6]	A	G	2.858e^-4	0.852	INTERGENIC
3L	5231642	3L_5231642_DEL [dm3] 3L_5238542_DEL [dm6]	TGGCG	T	2.859e^-4	0.852	INTRON shep
3L	5231662	3L_5231662_SNP [dm3] 3L_5238562_SNP [dm6]	T	C	2.859e^-4	0.852	INTRON shep
3L	17976824	3L_17976824_SNP [dm3] 3L_17983724_SNP [dm6]	G	C	2.861e^-4	0.852	INTRON Eip75B
3R	12970599	3R_12970599_SNP [dm3] 3R_17144877_SNP [dm6]	G	T	2.861e^-4	0.852	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	16738382	3L_16738382_SNP [dm3] 3L_16745282_SNP [dm6]	G	C	2.865e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	16598037	3R_16598037_SNP [dm3] 3R_20772315_SNP [dm6]	A	C	2.866e^-4	0.852	SYNONYMOUS_CODING Takl1 INTRON Syp
3R	26134439	3R_26134439_SNP [dm3] 3R_30308717_SNP [dm6]	T	C	2.870e^-4	0.852	INTRON hdc
3R	22312115	3R_22312115_SNP [dm3] 3R_26486393_SNP [dm6]	A	G	2.872e^-4	0.852	INTRON plum
2L	14478426	2L_14478426_SNP [dm3] 2L_14478426_SNP [dm6]	T	A	2.873e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16423289	3L_16423289_DEL [dm3] 3L_16430189_DEL [dm6]	TT	T	2.884e^-4	0.852	INTRON CG33158 & 1 other
2L	14062118	2L_14062118_SNP [dm3] 2L_14062118_SNP [dm6]	T	G	2.888e^-4	0.852	INTRON nAChRalpha5
2R	13807014	2R_13807014_SNP [dm3] 2R_17919509_SNP [dm6]	C	T	2.891e^-4	0.852	INTRON Elk
2L	17060524	2L_17060524_SNP [dm3] 2L_17060524_SNP [dm6]	C	A	2.893e^-4	0.852	INTERGENIC
2R	8869264	2R_8869264_SNP [dm3] 2R_12981759_SNP [dm6]	G	A	2.896e^-4	0.852	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	14364231	2R_14364231_SNP [dm3] 2R_18476726_SNP [dm6]	C	T	2.897e^-4	0.852	UTR_5_PRIME CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7491786	2L_7491786_INS [dm3] 2L_7491786_INS [dm6]	C	CAA	2.900e^-4	0.852	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	8869268	2R_8869268_SNP [dm3] 2R_12981763_SNP [dm6]	T	C	2.905e^-4	0.852	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	22311453	3R_22311453_SNP [dm3] 3R_26485731_SNP [dm6]	A	G	2.912e^-4	0.852	INTRON plum
3R	10661101	3R_10661101_SNP [dm3] 3R_14835379_SNP [dm6]	G	C	2.917e^-4	0.852	INTRON btsz
3R	17785992	3R_17785992_SNP [dm3] 3R_21960270_SNP [dm6]	A	T	2.920e^-4	0.852	INTRON Eip93F
3R	10661151	3R_10661151_SNP [dm3] 3R_14835429_SNP [dm6]	T	A	2.922e^-4	0.852	INTRON btsz
2L	2252049	2L_2252049_SNP [dm3] 2L_2252049_SNP [dm6]	A	C	2.931e^-4	0.852	NON_SYNONYMOUS_CODING CG17239 UPSTREAM Ser12 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9448502	3L_9448502_SNP [dm3] 3L_9455402_SNP [dm6]	C	G	2.932e^-4	0.852	SYNONYMOUS_CODING phol UPSTREAM CG3552 DOWNSTREAM CG3437	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	21042124	X_21042124_SNP [dm3] X_21171097_SNP [dm6]	T	A	2.932e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	2.934e^-4	0.852	INTRON sm
2L	17519408	2L_17519408_SNP [dm3] 2L_17519408_SNP [dm6]	C	T	2.934e^-4	0.852	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7494976	2L_7494976_SNP [dm3] 2L_7494976_SNP [dm6]	C	T	2.934e^-4	0.852	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6488363	X_6488363_SNP [dm3] X_6594330_SNP [dm6]	G	C	2.942e^-4	0.852	INTRON Pat1
3R	19438678	3R_19438678_SNP [dm3] 3R_23612956_SNP [dm6]	C	A	2.944e^-4	0.852	INTRON CG31145
3R	15372337	3R_15372337_SNP [dm3] 3R_19546615_SNP [dm6]	C	G	2.950e^-4	0.852	INTRON Dys
2L	21917574	2L_21917574_SNP [dm3] 2L_21917574_SNP [dm6]	A	T	2.968e^-4	0.852	DOWNSTREAM CG11634 INTRON CG11634
2L	2268875	2L_2268875_SNP [dm3] 2L_2268875_SNP [dm6]	G	A	2.978e^-4	0.852	SYNONYMOUS_CODING CG17242
X	6790331	X_6790331_SNP [dm3] X_6896298_SNP [dm6]	C	T	2.985e^-4	0.852	INTERGENIC
2L	7278863	2L_7278863_SNP [dm3] 2L_7278863_SNP [dm6]	T	A	2.986e^-4	0.852	INTERGENIC
2L	15026220	2L_15026220_SNP [dm3] 2L_15026220_SNP [dm6]	A	G	2.987e^-4	0.852	SYNONYMOUS_CODING GABA-B-R1 UPSTREAM CG33310	TF binding site mE1_TFBS_inv
3L	10712140	3L_10712140_INS [dm3] 3L_10719040_INS [dm6]	A	ATAAATAATAAATAA...	2.988e^-4	0.852	INTERGENIC
3R	16794218	3R_16794218_SNP [dm3] 3R_20968496_SNP [dm6]	C	T	2.991e^-4	0.852	INTRON Atpalpha
2R	20202883	2R_20202883_SNP [dm3] 2R_24315360_SNP [dm6]	C	T	2.993e^-4	0.852	INTERGENIC
X	16220443	X_16220443_SNP [dm3] X_16326410_SNP [dm6]	G	A	2.996e^-4	0.852	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15667875	3L_15667875_INS [dm3] 3L_15674775_INS [dm6]	T	TGGGGGTGAGT...	3.018e^-4	0.852	INTERGENIC	silencer mE1_HDAC_PRE
3L	9900769	3L_9900769_SNP [dm3] 3L_9907669_SNP [dm6]	T	C	3.022e^-4	0.852	UPSTREAM CG34356 INTERGENIC
3L	7899593	3L_7899593_SNP [dm3] 3L_7906493_SNP [dm6]	A	C	3.022e^-4	0.852	INTRON pbl
3R	11443123	3R_11443123_SNP [dm3] 3R_15617401_SNP [dm6]	G	A	3.025e^-4	0.852	INTERGENIC
3L	10213163	3L_10213163_SNP [dm3] 3L_10220063_SNP [dm6]	C	G	3.039e^-4	0.852	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	820189	3L_820189_SNP [dm3] 3L_820189_SNP [dm6]	C	A	3.043e^-4	0.852	UPSTREAM CR43883 INTERGENIC
2R	5344504	2R_5344504_SNP [dm3] 2R_9456999_SNP [dm6]	T	G	3.045e^-4	0.852	UPSTREAM Camta INTRON Camta	TF binding site mE1_TFBS_cad
X	6392673	X_6392673_SNP [dm3] X_6498640_SNP [dm6]	A	G	3.046e^-4	0.852	INTRON CG42340
3R	10658469	3R_10658469_DEL [dm3] 3R_14832747_DEL [dm6]	TTT	T	3.048e^-4	0.852	INTRON btsz
3L	9321863	3L_9321863_SNP [dm3] 3L_9328763_SNP [dm6]	G	C	3.054e^-4	0.852	INTERGENIC
3R	19735111	3R_19735111_SNP [dm3] 3R_23909389_SNP [dm6]	A	G	3.062e^-4	0.852	INTRON sba
X	5878772	X_5878772_SNP [dm3] X_5984739_SNP [dm6]	T	C	3.064e^-4	0.852	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
3R	9154859	3R_9154859_SNP [dm3] 3R_13329137_SNP [dm6]	T	C	3.067e^-4	0.852	UTR_3_PRIME PK2-R2
2R	18738991	2R_18738991_SNP [dm3] 2R_22851468_SNP [dm6]	A	T	3.068e^-4	0.852	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
2L	16432173	2L_16432173_SNP [dm3] 2L_16432173_SNP [dm6]	A	T	3.071e^-4	0.852	INTRON CG5888
2L	21831184	2L_21831184_SNP [dm3] 2L_21831184_SNP [dm6]	G	A	3.077e^-4	0.852	INTRON tsh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7094836	3R_7094836_DEL [dm3] 3R_11269114_DEL [dm6]	CAA	C	3.085e^-4	0.852	DOWNSTREAM CR31386 INTERGENIC
2L	1033626	2L_1033626_SNP [dm3] 2L_1033626_SNP [dm6]	C	A	3.090e^-4	0.852	INTRON IA-2
2L	1040873	2L_1040873_SNP [dm3] 2L_1040873_SNP [dm6]	A	C	3.099e^-4	0.852	INTRON IA-2
3L	3834872	3L_3834872_SNP [dm3] 3L_3834872_SNP [dm6]	T	G	3.100e^-4	0.852	INTRON enc
2L	5690305	2L_5690305_SNP [dm3] 2L_5690305_SNP [dm6]	G	C	3.108e^-4	0.852	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2L	7437118	2L_7437118_INS [dm3] 2L_7437118_INS [dm6]	T	TAAT	3.112e^-4	0.852	UPSTREAM CG5973 INTERGENIC
2L	11191110	2L_11191110_SNP [dm3] 2L_11191110_SNP [dm6]	C	T	3.113e^-4	0.852	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13320542	3L_13320542_SNP [dm3] 3L_13327442_SNP [dm6]	T	A	3.114e^-4	0.852	INTERGENIC
3L	18702528	3L_18702528_SNP [dm3] 3L_18709428_SNP [dm6]	A	G	3.115e^-4	0.852	DOWNSTREAM CR44674 INTERGENIC
3L	23585316	3L_23585316_SNP [dm3] 3L_23592216_SNP [dm6]	G	C	3.115e^-4	0.852	INTRON AGO3
2R	19715306	2R_19715306_SNP [dm3] 2R_23827783_SNP [dm6]	C	T	3.135e^-4	0.852	INTRON CG5549
2L	16714297	2L_16714297_SNP [dm3] 2L_16714297_SNP [dm6]	T	A	3.138e^-4	0.852	INTRON CG31808
3R	27154933	3R_27154933_SNP [dm3] 3R_31329211_SNP [dm6]	A	G	3.144e^-4	0.852	INTRON CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20436590	3L_20436590_SNP [dm3] 3L_20443490_SNP [dm6]	C	G	3.145e^-4	0.852	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4972311	X_4972311_SNP [dm3] X_5078278_SNP [dm6]	G	A	3.151e^-4	0.852	SYNONYMOUS_CODING CG32767
2R	439683	2R_439683_SNP [dm3] 2R_4552178_SNP [dm6]	T	G	3.155e^-4	0.852	INTRON Stlk	transposable element FlyBase
3L	1820364	3L_1820364_SNP [dm3] 3L_1820364_SNP [dm6]	A	T	3.158e^-4	0.852	INTRON GV1
3R	9225140	3R_9225140_SNP [dm3] 3R_13399418_SNP [dm6]	G	C	3.165e^-4	0.852	SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22937998	3R_22937998_SNP [dm3] 3R_27112276_SNP [dm6]	G	A	3.178e^-4	0.852	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	2726106	3L_2726106_SNP [dm3] 3L_2726106_SNP [dm6]	T	G	3.178e^-4	0.852	INTRON Mrtf
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	3.180e^-4	0.852	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15082510	2R_15082510_SNP [dm3] 2R_19195005_SNP [dm6]	C	A	3.185e^-4	0.852	INTRON hppy
3L	11542080	3L_11542080_SNP [dm3] 3L_11548980_SNP [dm6]	T	A	3.193e^-4	0.852	INTRON Mob2
X	13912409	X_13912409_SNP [dm3] X_14018376_SNP [dm6]	A	G	3.203e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	9876533	2L_9876533_SNP [dm3] 2L_9876533_SNP [dm6]	A	T	3.206e^-4	0.852	INTRON nAChRalpha6
3R	17683671	3R_17683671_SNP [dm3] 3R_21857949_SNP [dm6]	T	C	3.207e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6461518	3R_6461518_SNP [dm3] 3R_10635796_SNP [dm6]	C	A	3.211e^-4	0.852	INTRON hth
3R	22023053	3R_22023053_SNP [dm3] 3R_26197331_SNP [dm6]	A	C	3.213e^-4	0.852	INTRON CR44320
X	2564441	X_2564441_SNP [dm3] X_2670408_SNP [dm6]	A	T	3.227e^-4	0.852	INTRON sgg
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	3.228e^-4	0.852	INTRON Fife
3R	21056028	3R_21056028_SNP [dm3] 3R_25230306_SNP [dm6]	G	T	3.228e^-4	0.852	INTRON Cad96Cb
3L	10566035	3L_10566035_SNP [dm3] 3L_10572935_SNP [dm6]	G	C	3.234e^-4	0.852	INTRON A2bp1
3R	13959871	3R_13959871_SNP [dm3] 3R_18134149_SNP [dm6]	G	A	3.238e^-4	0.852	UTR_3_PRIME sr DOWNSTREAM sr
3R	10657484	3R_10657484_SNP [dm3] 3R_14831762_SNP [dm6]	G	C	3.240e^-4	0.852	INTRON btsz
2R	17526011	2R_17526011_SNP [dm3] 2R_21638506_SNP [dm6]	A	G	3.240e^-4	0.852	DOWNSTREAM CG10321 INTERGENIC
X	7771187	X_7771187_SNP [dm3] X_7877154_SNP [dm6]	T	A	3.244e^-4	0.852	NON_SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
2R	11961651	2R_11961651_INS [dm3] 2R_16074146_INS [dm6]	T	TA	3.245e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14951276	3L_14951276_SNP [dm3] 3L_14958176_SNP [dm6]	T	A	3.248e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	25054968	3R_25054968_SNP [dm3] 3R_29229246_SNP [dm6]	A	C	3.252e^-4	0.852	UTR_5_PRIME CG15817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	11401139	3R_11401139_SNP [dm3] 3R_15575417_SNP [dm6]	G	C	3.252e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17694042	2R_17694042_SNP [dm3] 2R_21806537_SNP [dm6]	C	T	3.255e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	5297309	2R_5297309_SNP [dm3] 2R_9409804_SNP [dm6]	C	A	3.260e^-4	0.852	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7493366	2L_7493366_SNP [dm3] 2L_7493366_SNP [dm6]	A	T	3.281e^-4	0.852	INTRON Ziz
2L	3872031	2L_3872031_SNP [dm3] 2L_3872031_SNP [dm6]	T	G	3.281e^-4	0.852	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	17401290	3L_17401290_SNP [dm3] 3L_17408190_SNP [dm6]	G	A	3.282e^-4	0.852	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	6457339	3L_6457339_SNP [dm3] 3L_6464239_SNP [dm6]	T	C	3.284e^-4	0.852	INTRON CG42747
X	16347892	X_16347892_SNP [dm3] X_16453859_SNP [dm6]	C	A	3.297e^-4	0.852	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2
2L	17723741	2L_17723741_SNP [dm3] 2L_17723741_SNP [dm6]	C	T	3.299e^-4	0.852	INTRON CadN
2L	13754130	2L_13754130_SNP [dm3] 2L_13754130_SNP [dm6]	G	A	3.299e^-4	0.852	INTRON CR44846 & 1 other EXON CR44846
3L	557219	3L_557219_SNP [dm3] 3L_557219_SNP [dm6]	A	G	3.301e^-4	0.852	INTRON hipk
2R	2773614	2R_2773614_SNP [dm3] 2R_6886109_SNP [dm6]	C	T	3.307e^-4	0.852	UPSTREAM Spn42De INTRON Spn42De	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8869272	2R_8869272_SNP [dm3] 2R_12981767_SNP [dm6]	C	A	3.307e^-4	0.852	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	9755715	X_9755715_SNP [dm3] X_9861682_SNP [dm6]	T	C	3.308e^-4	0.852	INTERGENIC
2L	16640269	2L_16640269_SNP [dm3] 2L_16640269_SNP [dm6]	C	A	3.308e^-4	0.852	INTRON CG42389
3R	10576324	3R_10576324_SNP [dm3] 3R_14750602_SNP [dm6]	C	T	3.315e^-4	0.852	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
3R	9168808	3R_9168808_SNP [dm3] 3R_13343086_SNP [dm6]	G	C	3.319e^-4	0.852	INTRON PK2-R1
3L	20885382	3L_20885382_SNP [dm3] 3L_20892282_SNP [dm6]	G	A	3.329e^-4	0.852	INTERGENIC
X	6927604	X_6927604_SNP [dm3] X_7033571_SNP [dm6]	A	G	3.331e^-4	0.852	INTRON CG12541	TF binding site BDTNP1_TFBS_twi
3R	10661158	3R_10661158_SNP [dm3] 3R_14835436_SNP [dm6]	T	G	3.331e^-4	0.852	INTRON btsz
3R	11541220	3R_11541220_SNP [dm3] 3R_15715498_SNP [dm6]	A	G	3.335e^-4	0.852	DOWNSTREAM CG31294 INTERGENIC
2L	13915865	2L_13915865_SNP [dm3] 2L_13915865_SNP [dm6]	A	G	3.345e^-4	0.852	NON_SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
2L	12021551	2L_12021551_DEL [dm3] 2L_12021551_DEL [dm6]	ATT	A	3.346e^-4	0.852	UPSTREAM CG6734 INTERGENIC
3R	14652705	3R_14652705_SNP [dm3] 3R_18826983_SNP [dm6]	G	A	3.350e^-4	0.852	INTRON CG18208
3L	11652108	3L_11652108_SNP [dm3] 3L_11659008_SNP [dm6]	G	T	3.350e^-4	0.852	INTRON CG32085
3L	2726083	3L_2726083_SNP [dm3] 3L_2726083_SNP [dm6]	G	T	3.364e^-4	0.852	INTRON Mrtf
3L	11746941	3L_11746941_INS [dm3] 3L_11753841_INS [dm6]	G	GAAAAGAAGGCTTAAAGGCG...	3.365e^-4	0.852	INTRON CG6024
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	3.373e^-4	0.852	INTRON sff
3R	11440269	3R_11440269_SNP [dm3] 3R_15614547_SNP [dm6]	T	A	3.379e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	6148545	2R_6148545_SNP [dm3] 2R_10261040_SNP [dm6]	G	T	3.379e^-4	0.852	NON_SYNONYMOUS_CODING CG12911 UTR_3_PRIME CG12911 DOWNSTREAM CR30009
2L	2277700	2L_2277700_SNP [dm3] 2L_2277700_SNP [dm6]	T	A	3.390e^-4	0.852	DOWNSTREAM CR43753 INTRON CR43753
2L	2619347	2L_2619347_SNP [dm3] 2L_2619347_SNP [dm6]	A	T	3.400e^-4	0.852	UPSTREAM CG43403 INTERGENIC
3R	12276034	3R_12276034_SNP [dm3] 3R_16450312_SNP [dm6]	T	A	3.413e^-4	0.852	INTRON Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19964927	2R_19964927_SNP [dm3] 2R_24077404_SNP [dm6]	G	T	3.417e^-4	0.852	DOWNSTREAM CG10339 INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20848791	3R_20848791_INS [dm3] 3R_25023069_INS [dm6]	T	TC	3.418e^-4	0.852	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
X	15818762	X_15818762_SNP [dm3] X_15924729_SNP [dm6]	A	G	3.424e^-4	0.852	UPSTREAM Lcch3 DOWNSTREAM CG8916 INTERGENIC
3L	4510272	3L_4510272_SNP [dm3] 3L_4510272_SNP [dm6]	A	G	3.427e^-4	0.852	DOWNSTREAM Tie INTERGENIC
3R	23274127	3R_23274127_DEL [dm3] 3R_27448405_DEL [dm6]	AAA	A	3.430e^-4	0.852	INTERGENIC
X	2669154	X_2669154_INS [dm3] X_2775121_INS [dm6]	A	AGA	3.433e^-4	0.852	INTRON kirre
X	5487124	X_5487124_SNP [dm3] X_5593091_SNP [dm6]	G	A	3.433e^-4	0.852	INTERGENIC
3R	15165497	3R_15165497_SNP [dm3] 3R_19339775_SNP [dm6]	A	C	3.442e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	14233069	3L_14233069_SNP [dm3] 3L_14239969_SNP [dm6]	A	G	3.443e^-4	0.852	UPSTREAM CR45399 INTERGENIC
3R	10878024	3R_10878024_SNP [dm3] 3R_15052302_SNP [dm6]	T	G	3.445e^-4	0.852	INTERGENIC
2L	13955126	2L_13955126_SNP [dm3] 2L_13955126_SNP [dm6]	G	T	3.445e^-4	0.852	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22072834	3R_22072834_SNP [dm3] 3R_26247112_SNP [dm6]	T	A	3.454e^-4	0.852	INTRON CR42745
3R	16064163	3R_16064163_SNP [dm3] 3R_20238441_SNP [dm6]	G	A	3.456e^-4	0.852	INTRON Nlg4
2L	18313502	2L_18313502_SNP [dm3] 2L_18313502_SNP [dm6]	A	T	3.477e^-4	0.852	DOWNSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13380223	X_13380223_SNP [dm3] X_13486190_SNP [dm6]	C	G	3.489e^-4	0.852	INTRON Neto
3L	6339847	3L_6339847_DEL [dm3] 3L_6346747_DEL [dm6]	CG	A	3.496e^-4	0.852	INTRON CG13300
2L	17047207	2L_17047207_SNP [dm3] 2L_17047207_SNP [dm6]	C	T	3.498e^-4	0.852	UTR_3_PRIME CG15136
3R	10661059	3R_10661059_SNP [dm3] 3R_14835337_SNP [dm6]	G	T	3.506e^-4	0.852	INTRON btsz
2R	18737643	2R_18737643_SNP [dm3] 2R_22850120_SNP [dm6]	A	T	3.508e^-4	0.852	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
2R	5629905	2R_5629905_SNP [dm3] 2R_9742400_SNP [dm6]	A	C	3.509e^-4	0.852	INTRON sqa
3R	11444395	3R_11444395_SNP [dm3] 3R_15618673_SNP [dm6]	C	T	3.512e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9626307	3R_9626307_SNP [dm3] 3R_13800585_SNP [dm6]	T	G	3.514e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
X	14217825	X_14217825_SNP [dm3] X_14323792_SNP [dm6]	C	T	3.525e^-4	0.852	INTRON dpr8
3L	5231602	3L_5231602_DEL [dm3] 3L_5238502_DEL [dm6]	GGACTCAATACAATCCTGTA...	G	3.528e^-4	0.852	INTRON shep
X	14376740	X_14376740_SNP [dm3] X_14482707_SNP [dm6]	T	A	3.536e^-4	0.852	INTERGENIC
2R	6677567	2R_6677567_DEL [dm3] 2R_10790062_DEL [dm6]	TAACAC	G	3.538e^-4	0.852	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18062465	2L_18062465_SNP [dm3] 2L_18062465_SNP [dm6]	G	A	3.542e^-4	0.852	SYNONYMOUS_CODING rdo
3L	19226387	3L_19226387_SNP [dm3] 3L_19233287_SNP [dm6]	A	G	3.554e^-4	0.852	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10232153	3L_10232153_SNP [dm3] 3L_10239053_SNP [dm6]	T	C	3.555e^-4	0.852	INTERGENIC
3R	20958930	3R_20958930_DEL [dm3] 3R_25133208_DEL [dm6]	ACATCTG	A	3.556e^-4	0.852	CODON_DELETION Bili
3R	22939417	3R_22939417_SNP [dm3] 3R_27113695_SNP [dm6]	G	C	3.567e^-4	0.852	NON_SYNONYMOUS_CODING CG5815	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26137396	3R_26137396_SNP [dm3] 3R_30311674_SNP [dm6]	T	A	3.573e^-4	0.852	INTRON hdc
2L	3271683	2L_3271683_SNP [dm3] 2L_3271683_SNP [dm6]	C	A	3.575e^-4	0.852	UTR_3_PRIME CG3347
X	7883004	X_7883004_SNP [dm3] X_7988971_SNP [dm6]	T	G	3.581e^-4	0.852	INTERGENIC
3L	10214103	3L_10214103_SNP [dm3] 3L_10221003_SNP [dm6]	A	C	3.583e^-4	0.852	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
3R	12264870	3R_12264870_SNP [dm3] 3R_16439148_SNP [dm6]	C	G	3.586e^-4	0.852	SYNONYMOUS_CODING ema	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	9176463	3R_9176463_SNP [dm3] 3R_13350741_SNP [dm6]	G	C	3.589e^-4	0.852	INTERGENIC
3L	10214083	3L_10214083_SNP [dm3] 3L_10220983_SNP [dm6]	A	G	3.590e^-4	0.852	UTR_3_PRIME scramb1 UPSTREAM CG32055	TF binding site mE1_TFBS_cad
3L	9465775	3L_9465775_SNP [dm3] 3L_9472675_SNP [dm6]	G	T	3.593e^-4	0.852	DOWNSTREAM CG44838 INTRON CG44838
3R	18680259	3R_18680259_SNP [dm3] 3R_22854537_SNP [dm6]	G	C	3.593e^-4	0.852	INTERGENIC
3L	15679082	3L_15679082_SNP [dm3] 3L_15685982_SNP [dm6]	T	C	3.596e^-4	0.852	SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452
3R	22072683	3R_22072683_SNP [dm3] 3R_26246961_SNP [dm6]	C	A	3.597e^-4	0.852	INTRON CR42745
X	21042618	X_21042618_SNP [dm3] X_21171591_SNP [dm6]	T	C	3.598e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	17387733	3L_17387733_SNP [dm3] 3L_17394633_SNP [dm6]	A	T	3.612e^-4	0.852	INTERGENIC
X	21043358	X_21043358_INS [dm3] X_21172331_INS [dm6]	C	CTGC	3.612e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	8869248	2R_8869248_SNP [dm3] 2R_12981743_SNP [dm6]	C	T	3.618e^-4	0.852	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6678422	3L_6678422_SNP [dm3] 3L_6685322_SNP [dm6]	G	A	3.627e^-4	0.852	INTERGENIC
X	6409814	X_6409814_DEL [dm3] X_6515781_DEL [dm6]	AGAAACTTAATTC...	A	3.629e^-4	0.852	INTRON CG42340
X	15094721	X_15094721_SNP [dm3] X_15200688_SNP [dm6]	G	A	3.632e^-4	0.852	INTERGENIC
2L	4448621	2L_4448621_SNP [dm3] 2L_4448621_SNP [dm6]	A	T	3.635e^-4	0.852	UTR_5_PRIME MFS18 DOWNSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	3662252	X_3662252_SNP [dm3] X_3768219_SNP [dm6]	T	G	3.635e^-4	0.852	INTRON tlk
3R	2483266	3R_2483266_SNP [dm3] 3R_6657544_SNP [dm6]	A	T	3.637e^-4	0.852	UPSTREAM twr & 1 other INTRON CG1307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	10658695	3R_10658695_SNP [dm3] 3R_14832973_SNP [dm6]	G	A	3.642e^-4	0.852	INTRON btsz
3R	14141732	3R_14141732_SNP [dm3] 3R_18316010_SNP [dm6]	G	C	3.643e^-4	0.852	DOWNSTREAM CG31235 INTERGENIC
3R	5955901	3R_5955901_SNP [dm3] 3R_10130179_SNP [dm6]	G	A	3.644e^-4	0.852	INTRON tws	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13724867	3R_13724867_DEL [dm3] 3R_17899145_DEL [dm6]	AGCACTACTTTTATTAATAG...	A	3.648e^-4	0.852	INTRON Rim
2R	14492538	2R_14492538_SNP [dm3] 2R_18605033_SNP [dm6]	G	T	3.669e^-4	0.852	INTRON GEFmeso
3R	25956440	3R_25956440_SNP [dm3] 3R_30130718_SNP [dm6]	A	C	3.670e^-4	0.852	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22004804	3R_22004804_SNP [dm3] 3R_26179082_SNP [dm6]	A	T	3.671e^-4	0.852	INTRON CG31323
3R	16064229	3R_16064229_SNP [dm3] 3R_20238507_SNP [dm6]	A	T	3.677e^-4	0.852	INTRON Nlg4
2R	18733521	2R_18733521_SNP [dm3] 2R_22845998_SNP [dm6]	T	G	3.696e^-4	0.852	UTR_5_PRIME CG3649	TF binding site mE1_TFBS_cad
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	3.706e^-4	0.852	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19430452	X_19430452_SNP [dm3] X_19536419_SNP [dm6]	T	C	3.707e^-4	0.852	INTRON CG32532
3L	5145285	3L_5145285_SNP [dm3] 3L_5152185_SNP [dm6]	A	G	3.718e^-4	0.852	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25948812	3R_25948812_SNP [dm3] 3R_30123090_SNP [dm6]	G	A	3.719e^-4	0.852	UTR_5_PRIME CG45072 DOWNSTREAM CG45073
3L	16738212	3L_16738212_SNP [dm3] 3L_16745112_SNP [dm6]	C	A	3.731e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4240367	3L_4240367_SNP [dm3] 3L_4240367_SNP [dm6]	G	A	3.736e^-4	0.852	UTR_5_PRIME CG14997 EXON CR45738	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11362284	2R_11362284_SNP [dm3] 2R_15474779_SNP [dm6]	G	T	3.737e^-4	0.852	INTRON CG8180
3R	25953098	3R_25953098_SNP [dm3] 3R_30127376_SNP [dm6]	C	T	3.739e^-4	0.852	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6414560	X_6414560_SNP [dm3] X_6520527_SNP [dm6]	T	C	3.742e^-4	0.852	INTRON CG42340
2L	11925524	2L_11925524_SNP [dm3] 2L_11925524_SNP [dm6]	C	T	3.751e^-4	0.852	INTRON Pde1c
2R	7504178	2R_7504178_SNP [dm3] 2R_11616673_SNP [dm6]	G	C	3.753e^-4	0.852	UPSTREAM tou DOWNSTREAM Egm EXON CR43907	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5717703	2R_5717703_SNP [dm3] 2R_9830198_SNP [dm6]	A	T	3.756e^-4	0.852	INTRON hebe
2L	17723161	2L_17723161_SNP [dm3] 2L_17723161_SNP [dm6]	G	A	3.770e^-4	0.852	INTRON CadN	TF binding site BDTNP1_TFBS_dl
3L	4240488	3L_4240488_SNP [dm3] 3L_4240488_SNP [dm6]	C	A	3.776e^-4	0.852	NON_SYNONYMOUS_CODING CG14997 EXON CR45738	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10171211	2L_10171211_SNP [dm3] 2L_10171211_SNP [dm6]	G	A	3.777e^-4	0.852	INTRON CG44153
3R	25640045	3R_25640045_SNP [dm3] 3R_29814323_SNP [dm6]	C	T	3.777e^-4	0.852	SYNONYMOUS_CODING ca DOWNSTREAM Vps16B	TF binding site mE1_TFBS_chinmo
3L	10818751	3L_10818751_SNP [dm3] 3L_10825651_SNP [dm6]	G	T	3.779e^-4	0.852	DOWNSTREAM CR45246 INTERGENIC
3L	9867276	3L_9867276_SNP [dm3] 3L_9874176_SNP [dm6]	A	T	3.784e^-4	0.852	INTERGENIC
2R	11467089	2R_11467089_SNP [dm3] 2R_15579584_SNP [dm6]	A	G	3.785e^-4	0.852	INTERGENIC
2L	9666376	2L_9666376_SNP [dm3] 2L_9666376_SNP [dm6]	A	G	3.787e^-4	0.852	INTERGENIC
3L	4510259	3L_4510259_SNP [dm3] 3L_4510259_SNP [dm6]	T	C	3.789e^-4	0.852	DOWNSTREAM Tie INTERGENIC
X	14454533	X_14454533_SNP [dm3] X_14560500_SNP [dm6]	C	G	3.799e^-4	0.852	INTERGENIC
2R	5714073	2R_5714073_SNP [dm3] 2R_9826568_SNP [dm6]	A	G	3.804e^-4	0.852	NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14975969	3L_14975969_SNP [dm3] 3L_14982869_SNP [dm6]	A	G	3.811e^-4	0.852	UTR_5_PRIME CG5114 DOWNSTREAM CG3349	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	18620835	3R_18620835_SNP [dm3] 3R_22795113_SNP [dm6]	A	T	3.823e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17480682	2R_17480682_SNP [dm3] 2R_21593177_SNP [dm6]	T	G	3.828e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6696160	2L_6696160_SNP [dm3] 2L_6696160_SNP [dm6]	A	C	3.830e^-4	0.852	INTRON Tsp
3R	11595258	3R_11595258_DEL [dm3] 3R_15769536_DEL [dm6]	AG	A	3.836e^-4	0.852	INTERGENIC
X	5878622	X_5878622_SNP [dm3] X_5984589_SNP [dm6]	T	C	3.839e^-4	0.852	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
3R	14055123	3R_14055123_SNP [dm3] 3R_18229401_SNP [dm6]	A	C	3.841e^-4	0.852	DOWNSTREAM Mdh2 INTERGENIC
3L	904355	3L_904355_SNP [dm3] 3L_904355_SNP [dm6]	T	C	3.844e^-4	0.852	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	2564425	X_2564425_SNP [dm3] X_2670392_SNP [dm6]	A	G	3.846e^-4	0.852	INTRON sgg
2R	14283091	2R_14283091_SNP [dm3] 2R_18395586_SNP [dm6]	G	T	3.850e^-4	0.852	DOWNSTREAM Idgf5 INTERGENIC
2L	10940654	2L_10940654_SNP [dm3] 2L_10940654_SNP [dm6]	T	A	3.864e^-4	0.852	INTRON dpr2
2L	14062135	2L_14062135_SNP [dm3] 2L_14062135_SNP [dm6]	C	G	3.865e^-4	0.852	INTRON nAChRalpha5
3R	14817825	3R_14817825_SNP [dm3] 3R_18992103_SNP [dm6]	G	T	3.868e^-4	0.852	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3271765	2L_3271765_SNP [dm3] 2L_3271765_SNP [dm6]	C	A	3.875e^-4	0.852	UTR_3_PRIME CG3347
X	21102319	X_21102319_DEL [dm3] X_21231292_DEL [dm6]	ATTAAATTCCTTAAGA...	T	3.875e^-4	0.852	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	4685533	3L_4685533_SNP [dm3] 3L_4685533_SNP [dm6]	C	T	3.877e^-4	0.852	INTRON axo
2R	16875177	2R_16875177_SNP [dm3] 2R_20987672_SNP [dm6]	A	G	3.898e^-4	0.852	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15459576	2R_15459576_SNP [dm3] 2R_19572071_SNP [dm6]	A	G	3.907e^-4	0.852	INTRON sm
2R	15889492	2R_15889492_SNP [dm3] 2R_20001987_SNP [dm6]	A	T	3.909e^-4	0.852	INTERGENIC
2L	3380139	2L_3380139_SNP [dm3] 2L_3380139_SNP [dm6]	C	A	3.923e^-4	0.852	INTERGENIC
2L	3380166	2L_3380166_SNP [dm3] 2L_3380166_SNP [dm6]	G	T	3.923e^-4	0.852	INTERGENIC
3L	17534329	3L_17534329_SNP [dm3] 3L_17541229_SNP [dm6]	A	T	3.937e^-4	0.852	INTRON Nedd4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21823957	3L_21823957_SNP [dm3] 3L_21830857_SNP [dm6]	A	C	3.943e^-4	0.852	NON_SYNONYMOUS_CODING CG7148 UPSTREAM CR43309	TF binding site mE1_TFBS_cad
2L	7493343	2L_7493343_SNP [dm3] 2L_7493343_SNP [dm6]	G	A	3.947e^-4	0.852	INTRON Ziz
2L	2274776	2L_2274776_SNP [dm3] 2L_2274776_SNP [dm6]	A	G	3.948e^-4	0.852	INTRON CR43753
3R	9412550	3R_9412550_SNP [dm3] 3R_13586828_SNP [dm6]	A	T	3.953e^-4	0.852	INTERGENIC
2R	18914524	2R_18914524_SNP [dm3] 2R_23027001_SNP [dm6]	C	T	3.955e^-4	0.852	INTRON twi & 1 other
2R	17480673	2R_17480673_SNP [dm3] 2R_21593168_SNP [dm6]	T	C	3.959e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15406383	X_15406383_SNP [dm3] X_15512350_SNP [dm6]	G	A	3.964e^-4	0.852	UTR_3_PRIME Ac13E
2R	20843333	2R_20843333_SNP [dm3] 2R_24955810_SNP [dm6]	A	T	3.970e^-4	0.852	DOWNSTREAM CG12851 EXON CR44830	TF binding site mE1_TFBS_cad
2L	9505855	2L_9505855_SNP [dm3] 2L_9505855_SNP [dm6]	A	C	3.971e^-4	0.852	INTRON CG33298
X	6479288	X_6479288_SNP [dm3] X_6585255_SNP [dm6]	G	A	3.975e^-4	0.852	UTR_3_PRIME CG34417 INTRON CG34417
2L	14905924	2L_14905924_SNP [dm3] 2L_14905924_SNP [dm6]	C	A	3.977e^-4	0.852	INTERGENIC
2R	16871614	2R_16871614_SNP [dm3] 2R_20984109_SNP [dm6]	A	T	3.979e^-4	0.852	UTR_3_PRIME CG15651 DOWNSTREAM CG9313
2R	18717670	2R_18717670_SNP [dm3] 2R_22830147_SNP [dm6]	A	G	3.989e^-4	0.852	SYNONYMOUS_CODING CG30272
3L	9455992	3L_9455992_SNP [dm3] 3L_9462892_SNP [dm6]	G	T	3.990e^-4	0.852	UTR_5_PRIME CG44838 UPSTREAM CG44838 INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16102481	2R_16102481_DEL [dm3] 2R_20214976_DEL [dm6]	AATGTGAAA	A	3.991e^-4	0.852	INTERGENIC
X	14540075	X_14540075_SNP [dm3] X_14646042_SNP [dm6]	A	G	3.993e^-4	0.852	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10654054	3R_10654054_SNP [dm3] 3R_14828332_SNP [dm6]	C	T	3.998e^-4	0.852	INTRON btsz
3R	11453834	3R_11453834_SNP [dm3] 3R_15628112_SNP [dm6]	T	A	4.000e^-4	0.852	INTERGENIC
3R	25075343	3R_25075343_SNP [dm3] 3R_29249621_SNP [dm6]	A	C	4.001e^-4	0.852	UPSTREAM SP1029 INTRON SP1029
3L	2824516	3L_2824516_SNP [dm3] 3L_2824516_SNP [dm6]	C	T	4.008e^-4	0.852	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16711976	2L_16711976_DEL [dm3] 2L_16711976_DEL [dm6]	CGGT	C	4.008e^-4	0.852	INTRON CG31808
X	16426469	X_16426469_SNP [dm3] X_16532436_SNP [dm6]	C	A	4.012e^-4	0.852	INTRON para
3L	6653488	3L_6653488_SNP [dm3] 3L_6660388_SNP [dm6]	C	A	4.015e^-4	0.852	INTERGENIC
3R	4708152	3R_4708152_SNP [dm3] 3R_8882430_SNP [dm6]	C	T	4.022e^-4	0.852	INTRON pyd
3L	7898415	3L_7898415_SNP [dm3] 3L_7905315_SNP [dm6]	A	G	4.023e^-4	0.852	INTRON pbl
X	8163514	X_8163514_SNP [dm3] X_8269481_SNP [dm6]	G	A	4.027e^-4	0.852	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	20918149	3R_20918149_SNP [dm3] 3R_25092427_SNP [dm6]	A	G	4.035e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26036299	3R_26036299_SNP [dm3] 3R_30210577_SNP [dm6]	T	C	4.035e^-4	0.852	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2R	19407188	2R_19407188_SNP [dm3] 2R_23519665_SNP [dm6]	G	A	4.042e^-4	0.852	DOWNSTREAM RabX1 INTERGENIC
2R	9962263	2R_9962263_SNP [dm3] 2R_14074758_SNP [dm6]	A	G	4.043e^-4	0.852	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25951875	3R_25951875_SNP [dm3] 3R_30126153_SNP [dm6]	G	A	4.046e^-4	0.852	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	12977474	3R_12977474_SNP [dm3] 3R_17151752_SNP [dm6]	G	A	4.047e^-4	0.852	UPSTREAM CG5292 DOWNSTREAM CG5285 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	15277318	2R_15277318_SNP [dm3] 2R_19389813_SNP [dm6]	C	A	4.051e^-4	0.852	UPSTREAM CG11257 DOWNSTREAM CG10081 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4165253	3L_4165253_SNP [dm3] 3L_4165253_SNP [dm6]	T	C	4.052e^-4	0.852	SYNONYMOUS_CODING mas
3L	14951280	3L_14951280_SNP [dm3] 3L_14958180_SNP [dm6]	C	T	4.055e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	17574797	3L_17574797_SNP [dm3] 3L_17581697_SNP [dm6]	A	C	4.057e^-4	0.852	INTRON Eip74EF
3L	10726955	3L_10726955_SNP [dm3] 3L_10733855_SNP [dm6]	A	G	4.057e^-4	0.852	INTERGENIC
3R	18496117	3R_18496117_SNP [dm3] 3R_22670395_SNP [dm6]	T	G	4.061e^-4	0.852	INTRON CG45058
3R	23183123	3R_23183123_SNP [dm3] 3R_27357401_SNP [dm6]	T	G	4.062e^-4	0.852	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11501129	3R_11501129_SNP [dm3] 3R_15675407_SNP [dm6]	T	C	4.062e^-4	0.852	INTRON pxb
3L	23489054	3L_23489054_SNP [dm3] 3L_23495954_SNP [dm6]	T	C	4.071e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	15855622	3L_15855622_SNP [dm3] 3L_15862522_SNP [dm6]	G	T	4.074e^-4	0.852	DOWNSTREAM pHCl INTRON pHCl
3R	25697418	3R_25697418_SNP [dm3] 3R_29871696_SNP [dm6]	C	T	4.074e^-4	0.852	SYNONYMOUS_CODING CG34133	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18325611	2R_18325611_SNP [dm3] 2R_22438106_SNP [dm6]	A	T	4.091e^-4	0.852	INTERGENIC
3L	2726300	3L_2726300_SNP [dm3] 3L_2726300_SNP [dm6]	T	C	4.092e^-4	0.852	INTRON Mrtf
3L	4342612	3L_4342612_SNP [dm3] 3L_4342612_SNP [dm6]	A	G	4.097e^-4	0.852	INTRON Cip4
X	15818793	X_15818793_SNP [dm3] X_15924760_SNP [dm6]	G	A	4.108e^-4	0.852	UPSTREAM Lcch3 DOWNSTREAM CG8916 INTERGENIC
X	3662081	X_3662081_SNP [dm3] X_3768048_SNP [dm6]	A	G	4.108e^-4	0.852	INTRON tlk
3R	3148686	3R_3148686_SNP [dm3] 3R_7322964_SNP [dm6]	A	G	4.111e^-4	0.852	INTERGENIC
3R	23268755	3R_23268755_SNP [dm3] 3R_27443033_SNP [dm6]	T	C	4.111e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11652398	2R_11652398_SNP [dm3] 2R_15764893_SNP [dm6]	G	A	4.117e^-4	0.852	INTRON Zasp52	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8026153	2L_8026153_SNP [dm3] 2L_8026153_SNP [dm6]	A	T	4.125e^-4	0.852	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
2L	22608971	2L_22608971_SNP [dm3] 2L_22716239_SNP [dm6]	G	T	4.130e^-4	0.852	INTRON CG40006
2L	3871948	2L_3871948_SNP [dm3] 2L_3871948_SNP [dm6]	T	C	4.145e^-4	0.852	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	21043375	X_21043375_SNP [dm3] X_21172348_SNP [dm6]	C	T	4.146e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	5716268	2R_5716268_SNP [dm3] 2R_9828763_SNP [dm6]	A	G	4.148e^-4	0.852	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad
3L	6315691	3L_6315691_SNP [dm3] 3L_6322591_SNP [dm6]	G	A	4.152e^-4	0.852	DOWNSTREAM Or65a INTERGENIC
2L	3236598	2L_3236598_SNP [dm3] 2L_3236598_SNP [dm6]	C	A	4.165e^-4	0.852	INTERGENIC
3R	11465504	3R_11465504_DEL [dm3] 3R_15639782_DEL [dm6]	CTGGCATATCC...	C	4.177e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22026819	3R_22026819_SNP [dm3] 3R_26201097_SNP [dm6]	C	G	4.180e^-4	0.852	INTRON CR44320
X	12667468	X_12667468_SNP [dm3] X_12773435_SNP [dm6]	T	A	4.181e^-4	0.852	UTR_3_PRIME CG32647 DOWNSTREAM CG32647 & 1 other
3R	22912777	3R_22912777_SNP [dm3] 3R_27087055_SNP [dm6]	C	T	4.183e^-4	0.852	UPSTREAM Cpr97Ea INTRON Cpr97Ea
2R	6755953	2R_6755953_SNP [dm3] 2R_10868448_SNP [dm6]	G	C	4.186e^-4	0.852	INTRON CG30015
2L	13010815	2L_13010815_SNP [dm3] 2L_13010815_SNP [dm6]	C	T	4.186e^-4	0.852	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20215139	2R_20215139_SNP [dm3] 2R_24327616_SNP [dm6]	G	A	4.197e^-4	0.852	INTRON CR44810
3R	18480143	3R_18480143_DEL [dm3] 3R_22654421_DEL [dm6]	CA	G	4.202e^-4	0.852	INTRON CG45058
3L	941551	3L_941551_SNP [dm3] 3L_941551_SNP [dm6]	A	G	4.202e^-4	0.852	INTRON Glut1
X	4655848	X_4655848_SNP [dm3] X_4761815_SNP [dm6]	A	T	4.204e^-4	0.852	INTERGENIC
X	16362529	X_16362529_DEL [dm3] X_16468496_DEL [dm6]	TTGT	T	4.206e^-4	0.852	INTRON para
3L	10302931	3L_10302931_SNP [dm3] 3L_10309831_SNP [dm6]	T	C	4.207e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12164427	2R_12164427_SNP [dm3] 2R_16276922_SNP [dm6]	A	T	4.212e^-4	0.852	NON_SYNONYMOUS_CODING CG33017 UTR_3_PRIME CG33017 DOWNSTREAM cato
3R	10654058	3R_10654058_SNP [dm3] 3R_14828336_SNP [dm6]	T	A	4.215e^-4	0.852	INTRON btsz
3R	24999199	3R_24999199_SNP [dm3] 3R_29173477_SNP [dm6]	T	C	4.217e^-4	0.852	UTR_3_PRIME CG14509 DOWNSTREAM CG14509	TF binding site mE1_TFBS_cad
3L	16969897	3L_16969897_SNP [dm3] 3L_16976797_SNP [dm6]	G	A	4.220e^-4	0.852	INTRON Exn
3R	19049624	3R_19049624_SNP [dm3] 3R_23223902_SNP [dm6]	T	C	4.238e^-4	0.852	INTRON cnc
X	15094692	X_15094692_DEL [dm3] X_15200659_DEL [dm6]	TTAATTGGTT	T	4.238e^-4	0.852	INTERGENIC
3R	15672564	3R_15672564_SNP [dm3] 3R_19846842_SNP [dm6]	T	C	4.241e^-4	0.852	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	5716535	2R_5716535_SNP [dm3] 2R_9829030_SNP [dm6]	T	C	4.243e^-4	0.852	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5144829	3L_5144829_SNP [dm3] 3L_5151729_SNP [dm6]	T	G	4.250e^-4	0.852	UPSTREAM Srp54k INTRON Gen	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14141812	3R_14141812_SNP [dm3] 3R_18316090_SNP [dm6]	A	G	4.257e^-4	0.852	UTR_3_PRIME CG31235 DOWNSTREAM CG31235
2R	7516828	2R_7516828_SNP [dm3] 2R_11629323_SNP [dm6]	T	A	4.260e^-4	0.852	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25956467	3R_25956467_SNP [dm3] 3R_30130745_SNP [dm6]	C	T	4.260e^-4	0.852	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18889009	2R_18889009_SNP [dm3] 2R_23001486_SNP [dm6]	C	A	4.261e^-4	0.852	INTRON twi	TF binding site mE1_TFBS_bab1
3R	9170124	3R_9170124_SNP [dm3] 3R_13344402_SNP [dm6]	A	G	4.272e^-4	0.852	SYNONYMOUS_CODING PK2-R1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17739307	2R_17739307_SNP [dm3] 2R_21851802_SNP [dm6]	A	G	4.275e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14492528	2R_14492528_DEL [dm3] 2R_18605023_DEL [dm6]	ATATGGGGT	A	4.275e^-4	0.852	INTRON GEFmeso
2R	9546306	2R_9546306_SNP [dm3] 2R_13658801_SNP [dm6]	A	T	4.286e^-4	0.852	INTRON fas
2R	9937201	2R_9937201_SNP [dm3] 2R_14049696_SNP [dm6]	A	G	4.291e^-4	0.852	INTRON mam	TF binding site BDTNP1_TFBS_prd
3L	14139005	3L_14139005_SNP [dm3] 3L_14145905_SNP [dm6]	T	A	4.294e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	14434713	X_14434713_SNP [dm3] X_14540680_SNP [dm6]	T	A	4.305e^-4	0.852	DOWNSTREAM CR45521 INTERGENIC
3R	26134311	3R_26134311_SNP [dm3] 3R_30308589_SNP [dm6]	A	T	4.308e^-4	0.852	INTRON hdc
3R	12718006	3R_12718006_SNP [dm3] 3R_16892284_SNP [dm6]	G	T	4.310e^-4	0.852	UPSTREAM CR43617 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	6160644	2R_6160644_SNP [dm3] 2R_10273139_SNP [dm6]	T	G	4.321e^-4	0.852	INTRON CAP
2R	6198348	2R_6198348_SNP [dm3] 2R_10310843_SNP [dm6]	C	T	4.333e^-4	0.852	SYNONYMOUS_CODING CG12909 DOWNSTREAM Obp46a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11961646	2R_11961646_SNP [dm3] 2R_16074141_SNP [dm6]	C	T	4.334e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17401372	3L_17401372_SNP [dm3] 3L_17408272_SNP [dm6]	C	T	4.335e^-4	0.852	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	21905012	X_21905012_SNP [dm3] X_22503176_SNP [dm6]	T	G	4.337e^-4	0.852	INTRON l_1_G0196
3R	22026813	3R_22026813_SNP [dm3] 3R_26201091_SNP [dm6]	T	G	4.339e^-4	0.852	INTRON CR44320	TF binding site mE1_TFBS_HSA
2L	16596762	2L_16596762_SNP [dm3] 2L_16596762_SNP [dm6]	G	A	4.348e^-4	0.852	INTRON CG42389
X	8163625	X_8163625_SNP [dm3] X_8269592_SNP [dm6]	G	A	4.350e^-4	0.852	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	10654019	3R_10654019_INS [dm3] 3R_14828297_INS [dm6]	T	TTCT	4.350e^-4	0.852	INTRON btsz
2R	3777339	2R_3777339_SNP [dm3] 2R_7889834_SNP [dm6]	G	A	4.352e^-4	0.852	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15672561	3R_15672561_SNP [dm3] 3R_19846839_SNP [dm6]	A	C	4.361e^-4	0.852	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	17047140	2L_17047140_SNP [dm3] 2L_17047140_SNP [dm6]	T	G	4.369e^-4	0.852	DOWNSTREAM CG15136 INTERGENIC
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	4.371e^-4	0.852	INTERGENIC
3L	9306277	3L_9306277_SNP [dm3] 3L_9313177_SNP [dm6]	C	T	4.372e^-4	0.852	INTERGENIC
3L	16055724	3L_16055724_SNP [dm3] 3L_16062624_SNP [dm6]	C	T	4.372e^-4	0.852	SYNONYMOUS_CODING Mbs
2R	9949237	2R_9949237_SNP [dm3] 2R_14061732_SNP [dm6]	A	T	4.375e^-4	0.852	UTR_3_PRIME Prosap
2L	18956383	2L_18956383_SNP [dm3] 2L_18956383_SNP [dm6]	C	T	4.382e^-4	0.852	INTRON CG10623
2R	9611358	2R_9611358_SNP [dm3] 2R_13723853_SNP [dm6]	T	C	4.382e^-4	0.852	INTRON fas
2L	17685188	2L_17685188_SNP [dm3] 2L_17685188_SNP [dm6]	A	G	4.382e^-4	0.852	INTRON CadN
2R	15915416	2R_15915416_SNP [dm3] 2R_20027911_SNP [dm6]	T	A	4.384e^-4	0.852	INTERGENIC
3L	9898856	3L_9898856_SNP [dm3] 3L_9905756_SNP [dm6]	A	T	4.385e^-4	0.852	INTERGENIC
3R	20232567	3R_20232567_SNP [dm3] 3R_24406845_SNP [dm6]	G	A	4.386e^-4	0.852	INTRON nAChRalpha1
3L	14137545	3L_14137545_SNP [dm3] 3L_14144445_SNP [dm6]	A	T	4.399e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
3R	17662696	3R_17662696_SNP [dm3] 3R_21836974_SNP [dm6]	A	T	4.412e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2480379	3R_2480379_SNP [dm3] 3R_6654657_SNP [dm6]	G	T	4.425e^-4	0.857	NON_SYNONYMOUS_CODING Taf1
2R	8870325	2R_8870325_SNP [dm3] 2R_12982820_SNP [dm6]	G	T	4.432e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10572536	3R_10572536_SNP [dm3] 3R_14746814_SNP [dm6]	G	A	4.455e^-4	0.861	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8872992	2R_8872992_SNP [dm3] 2R_12985487_SNP [dm6]	A	G	4.462e^-4	0.861	EXON CR44339	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4691911	3L_4691911_SNP [dm3] 3L_4691911_SNP [dm6]	A	G	4.477e^-4	0.861	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	16571123	3R_16571123_INS [dm3] 3R_20745401_INS [dm6]	G	GAG	4.481e^-4	0.861	UPSTREAM CG31200 INTRON CG42322
2L	14062101	2L_14062101_SNP [dm3] 2L_14062101_SNP [dm6]	A	G	4.488e^-4	0.861	INTRON nAChRalpha5
3R	20630835	3R_20630835_SNP [dm3] 3R_24805113_SNP [dm6]	C	T	4.488e^-4	0.861	SYNONYMOUS_CODING polybromo DOWNSTREAM CG5807	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8196704	3L_8196704_DEL [dm3] 3L_8203604_DEL [dm6]	GTCATCGGGACGACG...	G	4.491e^-4	0.861	DOWNSTREAM CG13679 INTERGENIC
2R	16875166	2R_16875166_SNP [dm3] 2R_20987661_SNP [dm6]	G	A	4.503e^-4	0.861	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	4.504e^-4	0.861	INTRON CG18769 & 1 other
3L	7926543	3L_7926543_SNP [dm3] 3L_7933443_SNP [dm6]	G	T	4.506e^-4	0.861	INTRON syd
3R	26036448	3R_26036448_SNP [dm3] 3R_30210726_SNP [dm6]	C	T	4.508e^-4	0.861	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	22211298	3R_22211298_SNP [dm3] 3R_26385576_SNP [dm6]	T	C	4.515e^-4	0.861	INTERGENIC
3L	18881705	3L_18881705_SNP [dm3] 3L_18888605_SNP [dm6]	C	T	4.518e^-4	0.861	INTRON CG3961
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	4.530e^-4	0.861	INTRON axo
2L	9505884	2L_9505884_SNP [dm3] 2L_9505884_SNP [dm6]	A	T	4.531e^-4	0.861	INTRON CG33298
2R	18594877	2R_18594877_SNP [dm3] 2R_22707372_SNP [dm6]	C	T	4.531e^-4	0.861	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
X	21042104	X_21042104_SNP [dm3] X_21171077_SNP [dm6]	T	A	4.536e^-4	0.861	INTERGENIC	transposable element FlyBase
3R	19732793	3R_19732793_DEL [dm3] 3R_23907071_DEL [dm6]	TGCAACGTCGGTGT...	T	4.542e^-4	0.861	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13725553	3R_13725553_SNP [dm3] 3R_17899831_SNP [dm6]	T	G	4.548e^-4	0.861	INTRON Rim
X	12211570	X_12211570_SNP [dm3] X_12317537_SNP [dm6]	G	A	4.548e^-4	0.861	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
3R	27179098	3R_27179098_DEL [dm3] 3R_31353376_DEL [dm6]	ATAATCAGAGAT...	A	4.550e^-4	0.861	INTRON CG34347
3R	8121189	3R_8121189_SNP [dm3] 3R_12295467_SNP [dm6]	T	C	4.552e^-4	0.861	UTR_3_PRIME svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3068917	X_3068917_SNP [dm3] X_3174884_SNP [dm6]	G	T	4.564e^-4	0.861	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	18735694	3R_18735694_SNP [dm3] 3R_22909972_SNP [dm6]	C	A	4.566e^-4	0.861	INTRON klg
3R	7050467	3R_7050467_SNP [dm3] 3R_11224745_SNP [dm6]	T	A	4.568e^-4	0.861	SYNONYMOUS_CODING RpL3 UTR_3_PRIME RpL3 UPSTREAM scpr-C DOWNSTREAM snoRNA:Psi28S-291 & 1 other
3L	923164	3L_923164_DEL [dm3] 3L_923164_DEL [dm6]	CC	C	4.574e^-4	0.862	INTRON Glut1
3L	17401319	3L_17401319_SNP [dm3] 3L_17408219_SNP [dm6]	A	G	4.582e^-4	0.862	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	4821494	2L_4821494_SNP [dm3] 2L_4821494_SNP [dm6]	A	G	4.590e^-4	0.862	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18164809	2R_18164809_SNP [dm3] 2R_22277304_SNP [dm6]	C	T	4.601e^-4	0.862	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24998157	3R_24998157_SNP [dm3] 3R_29172435_SNP [dm6]	T	A	4.606e^-4	0.862	UTR_3_PRIME CG14509 DOWNSTREAM CG11898 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15790917	3L_15790917_SNP [dm3] 3L_15797817_SNP [dm6]	G	C	4.609e^-4	0.862	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Weight_PooledDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results