DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.154e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03901

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.315	0.0211

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1890 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2380727	3L_2380727_SNP [dm3] 3L_2380727_SNP [dm6]	G	A	3.402e^-7	0.383	INTRON CG45186
X	20453090	X_20453090_INS [dm3] X_20582063_INS [dm6]	G	GCGGTGGCTTGGTG...	4.082e^-7	0.383	INTERGENIC
X	13428568	X_13428568_SNP [dm3] X_13534535_SNP [dm6]	G	A	6.945e^-7	0.434	SYNONYMOUS_CODING CG15756
3R	4370437	3R_4370437_SNP [dm3] 3R_8544715_SNP [dm6]	T	C	1.002e^-6	0.47	UPSTREAM CR45575 INTERGENIC
2L	7192878	2L_7192878_SNP [dm3] 2L_7192878_SNP [dm6]	T	C	1.527e^-6	0.572	SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4370439	3R_4370439_SNP [dm3] 3R_8544717_SNP [dm6]	T	G	3.037e^-6	0.76	UPSTREAM CR45575 INTERGENIC
X	13428577	X_13428577_SNP [dm3] X_13534544_SNP [dm6]	A	C	3.440e^-6	0.76	SYNONYMOUS_CODING CG15756
X	13428654	X_13428654_SNP [dm3] X_13534621_SNP [dm6]	T	G	3.817e^-6	0.76	NON_SYNONYMOUS_CODING CG15756
X	3193907	X_3193907_SNP [dm3] X_3299874_SNP [dm6]	C	A	3.995e^-6	0.76	INTRON dnc
X	20452179	X_20452179_DEL [dm3] X_20581152_DEL [dm6]	TTTCGGC	T	4.054e^-6	0.76	INTERGENIC
2L	16540052	2L_16540052_SNP [dm3] 2L_16540052_SNP [dm6]	T	C	6.148e^-6	0.916	INTERGENIC
2L	15407473	2L_15407473_SNP [dm3] 2L_15407473_SNP [dm6]	T	G	6.214e^-6	0.916	INTERGENIC
2R	19128037	2R_19128037_INS [dm3] 2R_23240514_INS [dm6]	A	AA	6.429e^-6	0.916	INTERGENIC
3R	15771872	3R_15771872_SNP [dm3] 3R_19946150_SNP [dm6]	T	G	6.839e^-6	0.916	INTRON Hs6st
3R	4635583	3R_4635583_SNP [dm3] 3R_8809861_SNP [dm6]	C	T	8.353e^-6	0.946	UPSTREAM CG9837 INTRON CG9837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	7008495	2L_7008495_SNP [dm3] 2L_7008495_SNP [dm6]	G	A	9.117e^-6	0.946	START_GAINED uif UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	13428628	X_13428628_SNP [dm3] X_13534595_SNP [dm6]	C	T	1.039e^-5	0.946	SYNONYMOUS_CODING CG15756
2L	7192827	2L_7192827_SNP [dm3] 2L_7192827_SNP [dm6]	A	G	1.059e^-5	0.946	SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5890114	2L_5890114_SNP [dm3] 2L_5890114_SNP [dm6]	C	T	1.090e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3046748	2L_3046748_SNP [dm3] 2L_3046748_SNP [dm6]	G	C	1.249e^-5	0.946	INTRON v_2_k05816 EXON CR43708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16539816	2L_16539816_SNP [dm3] 2L_16539816_SNP [dm6]	G	T	1.265e^-5	0.946	INTERGENIC
2L	15540906	2L_15540906_SNP [dm3] 2L_15540906_SNP [dm6]	A	G	1.633e^-5	0.946	INTERGENIC
3L	6372267	3L_6372267_SNP [dm3] 3L_6379167_SNP [dm6]	A	G	1.886e^-5	0.946	INTERGENIC
3L	2604195	3L_2604195_SNP [dm3] 3L_2604195_SNP [dm6]	G	A	2.014e^-5	0.946	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11585031	3L_11585031_SNP [dm3] 3L_11591931_SNP [dm6]	C	A	2.068e^-5	0.946	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3145247	X_3145247_SNP [dm3] X_3251214_SNP [dm6]	T	C	2.074e^-5	0.946	DOWNSTREAM Sgs4 INTRON dnc
3L	10363732	3L_10363732_SNP [dm3] 3L_10370632_SNP [dm6]	T	C	2.166e^-5	0.946	INTERGENIC
3R	17006277	3R_17006277_SNP [dm3] 3R_21180555_SNP [dm6]	A	C	2.227e^-5	0.946	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4383673	3R_4383673_SNP [dm3] 3R_8557951_SNP [dm6]	C	A	2.233e^-5	0.946	INTERGENIC
2L	3119493	2L_3119493_SNP [dm3] 2L_3119493_SNP [dm6]	A	C	2.282e^-5	0.946	INTRON toc
3R	16991883	3R_16991883_SNP [dm3] 3R_21166161_SNP [dm6]	T	C	2.298e^-5	0.946	SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
3L	7411004	3L_7411004_SNP [dm3] 3L_7417904_SNP [dm6]	C	T	2.332e^-5	0.946	INTERGENIC
X	20453085	X_20453085_SNP [dm3] X_20582058_SNP [dm6]	G	T	2.342e^-5	0.946	INTERGENIC
3R	15131309	3R_15131309_SNP [dm3] 3R_19305587_SNP [dm6]	T	C	2.353e^-5	0.946	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	20145500	X_20145500_SNP [dm3] X_20274474_SNP [dm6]	C	T	2.370e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20452192	X_20452192_SNP [dm3] X_20581165_SNP [dm6]	T	A	2.440e^-5	0.946	INTERGENIC
3R	17006271	3R_17006271_SNP [dm3] 3R_21180549_SNP [dm6]	A	T	2.456e^-5	0.946	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	13428625	X_13428625_SNP [dm3] X_13534592_SNP [dm6]	T	C	2.533e^-5	0.946	SYNONYMOUS_CODING CG15756
2L	987293	2L_987293_SNP [dm3] 2L_987293_SNP [dm6]	C	T	2.583e^-5	0.946	DOWNSTREAM CR44801 INTERGENIC
X	20452327	X_20452327_SNP [dm3] X_20581300_SNP [dm6]	T	A	2.670e^-5	0.946	INTERGENIC
2L	3957779	2L_3957779_SNP [dm3] 2L_3957779_SNP [dm6]	G	T	2.744e^-5	0.946	INTRON fred
2L	16005502	2L_16005502_SNP [dm3] 2L_16005502_SNP [dm6]	T	A	2.799e^-5	0.946	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
X	4243293	X_4243293_SNP [dm3] X_4349260_SNP [dm6]	A	G	2.939e^-5	0.946	UTR_5_PRIME norpA
2R	16294644	2R_16294644_SNP [dm3] 2R_20407139_SNP [dm6]	T	G	2.991e^-5	0.946	INTERGENIC
X	20453149	X_20453149_SNP [dm3] X_20582122_SNP [dm6]	A	G	3.006e^-5	0.946	INTERGENIC
X	12404511	X_12404511_SNP [dm3] X_12510478_SNP [dm6]	T	C	3.043e^-5	0.946	INTRON CG2556
3R	3200401	3R_3200401_SNP [dm3] 3R_7374679_SNP [dm6]	C	T	3.090e^-5	0.946	INTERGENIC
3L	2993333	3L_2993333_SNP [dm3] 3L_2993333_SNP [dm6]	C	G	3.120e^-5	0.946	INTERGENIC
2R	16998517	2R_16998517_SNP [dm3] 2R_21111012_SNP [dm6]	A	G	3.197e^-5	0.946	INTRON ktub
3R	5733186	3R_5733186_SNP [dm3] 3R_9907464_SNP [dm6]	T	G	3.212e^-5	0.946	INTRON Glut4EF
3R	24878215	3R_24878215_SNP [dm3] 3R_29052493_SNP [dm6]	C	A	3.262e^-5	0.946	UPSTREAM CG11842 DOWNSTREAM CG11841 INTERGENIC
2R	19241664	2R_19241664_SNP [dm3] 2R_23354141_SNP [dm6]	T	C	3.300e^-5	0.946	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6936174	2L_6936174_SNP [dm3] 2L_6936174_SNP [dm6]	C	T	3.322e^-5	0.946	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2566049	3L_2566049_SNP [dm3] 3L_2566049_SNP [dm6]	C	T	3.338e^-5	0.946	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2381258	3L_2381258_SNP [dm3] 3L_2381258_SNP [dm6]	A	G	3.437e^-5	0.946	INTRON CG45186
2L	14358786	2L_14358786_SNP [dm3] 2L_14358786_SNP [dm6]	C	A	3.473e^-5	0.946	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	3.737e^-5	0.946	INTERGENIC
X	3783645	X_3783645_SNP [dm3] X_3889612_SNP [dm6]	A	G	3.786e^-5	0.946	INTRON CG15239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4378510	2L_4378510_SNP [dm3] 2L_4378510_SNP [dm6]	T	C	3.862e^-5	0.946	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3934635	3L_3934635_SNP [dm3] 3L_3934635_SNP [dm6]	C	T	3.964e^-5	0.946	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3R	17006280	3R_17006280_SNP [dm3] 3R_21180558_SNP [dm6]	A	T	4.030e^-5	0.946	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9057775	2R_9057775_SNP [dm3] 2R_13170270_SNP [dm6]	T	C	4.045e^-5	0.946	INTRON CR45142 & 1 other
X	12263539	X_12263539_SNP [dm3] X_12369506_SNP [dm6]	G	T	4.172e^-5	0.946	INTERGENIC
2L	7011372	2L_7011372_SNP [dm3] 2L_7011372_SNP [dm6]	G	A	4.212e^-5	0.946	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6230391	2L_6230391_SNP [dm3] 2L_6230391_SNP [dm6]	G	C	4.221e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15409309	2L_15409309_SNP [dm3] 2L_15409309_SNP [dm6]	A	T	4.261e^-5	0.946	INTERGENIC
2L	9413708	2L_9413708_SNP [dm3] 2L_9413708_SNP [dm6]	C	A	4.309e^-5	0.946	INTRON Shawl
2R	12861676	2R_12861676_SNP [dm3] 2R_16974171_SNP [dm6]	A	G	4.317e^-5	0.946	INTRON Cbp53E
X	8553578	X_8553578_SNP [dm3] X_8659545_SNP [dm6]	G	A	4.389e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15368598	3R_15368598_SNP [dm3] 3R_19542876_SNP [dm6]	G	A	4.448e^-5	0.946	INTRON Dys
2L	4718623	2L_4718623_SNP [dm3] 2L_4718623_SNP [dm6]	A	G	4.485e^-5	0.946	INTRON CG34351
2L	14358791	2L_14358791_SNP [dm3] 2L_14358791_SNP [dm6]	A	T	4.488e^-5	0.946	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	18325276	3R_18325276_SNP [dm3] 3R_22499554_SNP [dm6]	T	C	4.532e^-5	0.946	INTRON Octbeta1R
3L	19400368	3L_19400368_SNP [dm3] 3L_19407268_SNP [dm6]	C	G	4.540e^-5	0.946	INTRON CG32206
X	16523825	X_16523825_SNP [dm3] X_16629792_SNP [dm6]	A	G	4.553e^-5	0.946	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20396960	X_20396960_INS [dm3] X_20525933_INS [dm6]	AA	GTTGTT	4.590e^-5	0.946	INTERGENIC	transposable element FlyBase
X	3145264	X_3145264_SNP [dm3] X_3251231_SNP [dm6]	G	A	4.617e^-5	0.946	DOWNSTREAM Sgs4 INTRON dnc
2L	4748605	2L_4748605_SNP [dm3] 2L_4748605_SNP [dm6]	T	A	4.620e^-5	0.946	INTRON CG15630
3L	12435933	3L_12435933_SNP [dm3] 3L_12442833_SNP [dm6]	G	A	4.655e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11585027	3L_11585027_SNP [dm3] 3L_11591927_SNP [dm6]	G	T	4.713e^-5	0.946	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5479381	2L_5479381_SNP [dm3] 2L_5479381_SNP [dm6]	A	G	4.728e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5650511	3L_5650511_SNP [dm3] 3L_5657411_SNP [dm6]	G	A	4.731e^-5	0.946	UPSTREAM sif DOWNSTREAM lin-28 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11585035	3L_11585035_SNP [dm3] 3L_11591935_SNP [dm6]	A	G	4.744e^-5	0.946	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15409321	2L_15409321_SNP [dm3] 2L_15409321_SNP [dm6]	T	A	4.753e^-5	0.946	INTERGENIC
2R	10326051	2R_10326051_SNP [dm3] 2R_14438546_SNP [dm6]	C	G	4.776e^-5	0.946	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	951541	3L_951541_SNP [dm3] 3L_951541_SNP [dm6]	C	A	4.812e^-5	0.946	INTRON Glut1
2L	16540004	2L_16540004_SNP [dm3] 2L_16540004_SNP [dm6]	A	G	4.847e^-5	0.946	INTERGENIC
2L	3903139	2L_3903139_SNP [dm3] 2L_3903139_SNP [dm6]	T	C	4.916e^-5	0.946	UTR_3_PRIME fred UPSTREAM capu
2R	15696311	2R_15696311_SNP [dm3] 2R_19808806_SNP [dm6]	T	A	4.946e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15696327	2R_15696327_SNP [dm3] 2R_19808822_SNP [dm6]	T	A	4.946e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	4.970e^-5	0.946	INTRON Brf
2L	987166	2L_987166_SNP [dm3] 2L_987166_SNP [dm6]	T	A	5.014e^-5	0.946	DOWNSTREAM CR44801 INTERGENIC
2L	987170	2L_987170_SNP [dm3] 2L_987170_SNP [dm6]	G	A	5.014e^-5	0.946	DOWNSTREAM CR44801 INTERGENIC
3L	2380728	3L_2380728_SNP [dm3] 3L_2380728_SNP [dm6]	G	A	5.074e^-5	0.946	INTRON CG45186
2R	9207102	2R_9207102_SNP [dm3] 2R_13319597_SNP [dm6]	A	T	5.141e^-5	0.946	INTERGENIC
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	5.257e^-5	0.946	INTRON Brf
2L	3997216	2L_3997216_SNP [dm3] 2L_3997216_SNP [dm6]	A	T	5.261e^-5	0.946	INTERGENIC
2R	15696305	2R_15696305_SNP [dm3] 2R_19808800_SNP [dm6]	A	G	5.271e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13428595	X_13428595_SNP [dm3] X_13534562_SNP [dm6]	G	A	5.352e^-5	0.946	SYNONYMOUS_CODING CG15756
3L	2993331	3L_2993331_SNP [dm3] 3L_2993331_SNP [dm6]	C	A	5.388e^-5	0.946	INTERGENIC
2R	9058488	2R_9058488_SNP [dm3] 2R_13170983_SNP [dm6]	G	A	5.390e^-5	0.946	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22062689	X_22062689_SNP [dm3] X_22660853_SNP [dm6]	C	A	5.411e^-5	0.946	INTRON CR44997
3L	9202024	3L_9202024_SNP [dm3] 3L_9208924_SNP [dm6]	C	T	5.454e^-5	0.946	UPSTREAM Slc45-1 INTERGENIC
2R	8790543	2R_8790543_SNP [dm3] 2R_12903038_SNP [dm6]	C	A	5.525e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
4	247268	4_247268_SNP [dm3] 4_226642_SNP [dm6]	C	T	5.567e^-5	0.946	UPSTREAM CG31999 INTRON CG31999	transposable element FlyBase
2R	12861642	2R_12861642_SNP [dm3] 2R_16974137_SNP [dm6]	T	C	5.579e^-5	0.946	INTRON Cbp53E
3L	22579008	3L_22579008_SNP [dm3] 3L_22585908_SNP [dm6]	G	T	5.652e^-5	0.946	INTRON CG14459
3L	2604572	3L_2604572_DEL [dm3] 3L_2604572_DEL [dm6]	GG	G	5.795e^-5	0.946	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3R	15369183	3R_15369183_SNP [dm3] 3R_19543461_SNP [dm6]	G	A	5.864e^-5	0.946	INTRON Dys
2R	9196083	2R_9196083_SNP [dm3] 2R_13308578_SNP [dm6]	A	T	5.947e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	758867	2R_758867_SNP [dm3] 2R_4871362_SNP [dm6]	A	G	6.087e^-5	0.946	INTERGENIC
X	12096141	X_12096141_SNP [dm3] X_12202108_SNP [dm6]	G	A	6.106e^-5	0.946	INTRON Ten-a
3R	15138791	3R_15138791_SNP [dm3] 3R_19313069_SNP [dm6]	A	G	6.243e^-5	0.946	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20713723	3R_20713723_DEL [dm3] 3R_24888001_DEL [dm6]	TG	A	6.250e^-5	0.946	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10937934	3L_10937934_DEL [dm3] 3L_10944834_DEL [dm6]	CT	C	6.277e^-5	0.946	INTRON CG34050
3R	5736637	3R_5736637_SNP [dm3] 3R_9910915_SNP [dm6]	T	A	6.282e^-5	0.946	INTRON Glut4EF
3R	13774666	3R_13774666_SNP [dm3] 3R_17948944_SNP [dm6]	A	G	6.288e^-5	0.946	INTRON cpo
3R	6282292	3R_6282292_SNP [dm3] 3R_10456570_SNP [dm6]	T	C	6.297e^-5	0.946	INTERGENIC
2R	9196071	2R_9196071_SNP [dm3] 2R_13308566_SNP [dm6]	T	A	6.423e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16539809	2L_16539809_SNP [dm3] 2L_16539809_SNP [dm6]	T	C	6.442e^-5	0.946	INTERGENIC
X	14466435	X_14466435_SNP [dm3] X_14572402_SNP [dm6]	C	A	6.458e^-5	0.946	INTERGENIC
2L	9175907	2L_9175907_INS [dm3] 2L_9175907_INS [dm6]	A	AATCTAATAT	6.565e^-5	0.946	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18956902	3L_18956902_SNP [dm3] 3L_18963802_SNP [dm6]	A	G	6.576e^-5	0.946	INTERGENIC
2R	5661480	2R_5661480_SNP [dm3] 2R_9773975_SNP [dm6]	C	G	6.637e^-5	0.946	INTRON CG1688
3L	2378523	3L_2378523_SNP [dm3] 3L_2378523_SNP [dm6]	T	C	6.718e^-5	0.946	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da
3R	13058533	3R_13058533_SNP [dm3] 3R_17232811_SNP [dm6]	G	A	6.749e^-5	0.946	SYNONYMOUS_CODING beat-IIb
3R	15369395	3R_15369395_SNP [dm3] 3R_19543673_SNP [dm6]	C	T	6.906e^-5	0.946	INTRON Dys
2R	19899780	2R_19899780_SNP [dm3] 2R_24012257_SNP [dm6]	G	T	6.929e^-5	0.946	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18111112	3L_18111112_SNP [dm3] 3L_18118012_SNP [dm6]	T	C	6.950e^-5	0.946	UTR_3_PRIME CG32195 INTRON CG7341
2L	8034996	2L_8034996_SNP [dm3] 2L_8034996_SNP [dm6]	T	G	7.087e^-5	0.946	INTRON CG7367 & 1 other
2L	1316505	2L_1316505_SNP [dm3] 2L_1316505_SNP [dm6]	A	T	7.270e^-5	0.946	INTERGENIC
2R	3978790	2R_3978790_INS [dm3] 2R_8091285_INS [dm6]	T	TATGT	7.295e^-5	0.946	UTR_3_PRIME sut3 UPSTREAM CG8713
2L	7103019	2L_7103019_SNP [dm3] 2L_7103019_SNP [dm6]	A	G	7.407e^-5	0.946	INTRON Pvf3
2L	3445638	2L_3445638_SNP [dm3] 2L_3445638_SNP [dm6]	T	C	7.461e^-5	0.946	UPSTREAM CG2772 INTERGENIC
2R	19241641	2R_19241641_SNP [dm3] 2R_23354118_SNP [dm6]	G	A	7.587e^-5	0.946	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4758799	X_4758799_SNP [dm3] X_4864766_SNP [dm6]	T	A	7.664e^-5	0.946	INTRON CG42594
2L	2826707	2L_2826707_SNP [dm3] 2L_2826707_SNP [dm6]	T	A	7.730e^-5	0.946	INTRON Duox
2R	19241623	2R_19241623_DEL [dm3] 2R_23354100_DEL [dm6]	AAAAGTCA	A	7.732e^-5	0.946	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19241632	2R_19241632_DEL [dm3] 2R_23354109_DEL [dm6]	TTTTGAA	T	7.732e^-5	0.946	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16005503	2L_16005503_SNP [dm3] 2L_16005503_SNP [dm6]	G	A	7.767e^-5	0.946	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2R	18557583	2R_18557583_SNP [dm3] 2R_22670078_SNP [dm6]	G	A	7.807e^-5	0.946	UPSTREAM RYBP INTRON CG13516
X	7241985	X_7241985_SNP [dm3] X_7347952_SNP [dm6]	T	G	7.822e^-5	0.946	UPSTREAM CG15034 INTRON CR44357 & 1 other
2L	7586778	2L_7586778_SNP [dm3] 2L_7586778_SNP [dm6]	C	T	7.859e^-5	0.946	INTERGENIC
3R	13058575	3R_13058575_SNP [dm3] 3R_17232853_SNP [dm6]	A	G	8.028e^-5	0.946	SYNONYMOUS_CODING beat-IIb
2R	9213553	2R_9213553_SNP [dm3] 2R_13326048_SNP [dm6]	G	A	8.340e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9175899	2L_9175899_SNP [dm3] 2L_9175899_SNP [dm6]	G	T	8.365e^-5	0.946	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5890101	2L_5890101_SNP [dm3] 2L_5890101_SNP [dm6]	G	A	8.465e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5890104	2L_5890104_SNP [dm3] 2L_5890104_SNP [dm6]	T	C	8.465e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1448383	2L_1448383_SNP [dm3] 2L_1448383_SNP [dm6]	A	T	8.476e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5713473	X_5713473_SNP [dm3] X_5819440_SNP [dm6]	G	C	8.529e^-5	0.946	INTRON CG15765
2L	7008896	2L_7008896_SNP [dm3] 2L_7008896_SNP [dm6]	G	A	8.665e^-5	0.946	INTRON uif	TF binding site BDTNP1_TFBS_dl
2R	10085173	2R_10085173_SNP [dm3] 2R_14197668_SNP [dm6]	C	G	8.726e^-5	0.946	SYNONYMOUS_CODING CG30069 DOWNSTREAM VGAT	TF binding site mE1_TFBS_sens
X	10227017	X_10227017_SNP [dm3] X_10332984_SNP [dm6]	T	C	8.754e^-5	0.946	UPSTREAM CG43740 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12124938	3L_12124938_SNP [dm3] 3L_12131838_SNP [dm6]	G	A	8.769e^-5	0.946	UTR_3_PRIME Lsp2 UPSTREAM CG11534 DOWNSTREAM Lsp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6814268	2L_6814268_SNP [dm3] 2L_6814268_SNP [dm6]	T	C	8.776e^-5	0.946	INTERGENIC
2L	7207001	2L_7207001_SNP [dm3] 2L_7207001_SNP [dm6]	T	G	8.779e^-5	0.946	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	7586768	2L_7586768_SNP [dm3] 2L_7586768_SNP [dm6]	G	A	8.821e^-5	0.946	INTERGENIC
3R	16577762	3R_16577762_SNP [dm3] 3R_20752040_SNP [dm6]	C	A	8.885e^-5	0.946	INTRON CG42322
2R	14663907	2R_14663907_SNP [dm3] 2R_18776402_SNP [dm6]	A	G	8.906e^-5	0.946	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8756423	3L_8756423_SNP [dm3] 3L_8763323_SNP [dm6]	C	G	8.920e^-5	0.946	INTRON Fhos
2R	721573	2R_721573_SNP [dm3] 2R_4834068_SNP [dm6]	C	A	9.064e^-5	0.946	INTERGENIC	transposable element FlyBase
3R	11189170	3R_11189170_SNP [dm3] 3R_15363448_SNP [dm6]	G	T	9.198e^-5	0.946	NON_SYNONYMOUS_CODING CG6171 DOWNSTREAM CG34404 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	9.243e^-5	0.946	INTRON dpr3
2L	20054439	2L_20054439_SNP [dm3] 2L_20054439_SNP [dm6]	A	G	9.256e^-5	0.946	SYNONYMOUS_CODING sNPF
2R	19899758	2R_19899758_SNP [dm3] 2R_24012235_SNP [dm6]	A	G	9.261e^-5	0.946	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14358833	2L_14358833_SNP [dm3] 2L_14358833_SNP [dm6]	T	C	9.310e^-5	0.946	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	2380964	3L_2380964_SNP [dm3] 3L_2380964_SNP [dm6]	C	T	9.360e^-5	0.946	INTRON CG45186
3R	15369322	3R_15369322_SNP [dm3] 3R_19543600_SNP [dm6]	A	G	9.389e^-5	0.946	INTRON Dys
2L	6091248	2L_6091248_SNP [dm3] 2L_6091248_SNP [dm6]	A	T	9.392e^-5	0.946	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9462179	2L_9462179_SNP [dm3] 2L_9462179_SNP [dm6]	A	G	9.398e^-5	0.946	SYNONYMOUS_CODING numb	TF binding site mE1_TFBS_cad
3R	6824732	3R_6824732_SNP [dm3] 3R_10999010_SNP [dm6]	T	C	9.460e^-5	0.946	INTRON CG34114
3L	9203516	3L_9203516_SNP [dm3] 3L_9210416_SNP [dm6]	G	A	9.488e^-5	0.946	INTERGENIC
2L	17315075	2L_17315075_SNP [dm3] 2L_17315075_SNP [dm6]	T	G	9.562e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12125349	3L_12125349_SNP [dm3] 3L_12132249_SNP [dm6]	G	C	9.579e^-5	0.946	SYNONYMOUS_CODING CG11534 DOWNSTREAM Lsp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18111122	3L_18111122_SNP [dm3] 3L_18118022_SNP [dm6]	C	A	9.590e^-5	0.946	UTR_3_PRIME CG32195 INTRON CG7341
3R	25315560	3R_25315560_SNP [dm3] 3R_29489838_SNP [dm6]	C	T	9.720e^-5	0.946	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8368116	2L_8368116_SNP [dm3] 2L_8368116_SNP [dm6]	C	T	9.879e^-5	0.946	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14322450	3R_14322450_SNP [dm3] 3R_18496728_SNP [dm6]	T	C	9.902e^-5	0.946	INTRON fru
X	3783761	X_3783761_SNP [dm3] X_3889728_SNP [dm6]	T	C	1.022e^-4	0.946	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_chinmo
2R	9203466	2R_9203466_SNP [dm3] 2R_13315961_SNP [dm6]	T	G	1.023e^-4	0.946	INTERGENIC
3L	11584980	3L_11584980_SNP [dm3] 3L_11591880_SNP [dm6]	G	A	1.033e^-4	0.946	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20870020	3L_20870020_SNP [dm3] 3L_20876920_SNP [dm6]	A	T	1.041e^-4	0.946	INTRON CG32432
3L	19637899	3L_19637899_SNP [dm3] 3L_19644799_SNP [dm6]	G	A	1.042e^-4	0.946	INTERGENIC
3L	3815964	3L_3815964_SNP [dm3] 3L_3815964_SNP [dm6]	G	T	1.042e^-4	0.946	UTR_3_PRIME Acp63F UPSTREAM CR43932 & 1 other INTRON Scsalpha
3L	10339288	3L_10339288_SNP [dm3] 3L_10346188_SNP [dm6]	G	A	1.045e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_sens
2R	7033121	2R_7033121_MNP [dm3] 2R_11145616_MNP [dm6]	AAT	TGG	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033128	2R_7033128_INS [dm3] 2R_11145623_INS [dm6]	A	AG	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033130	2R_7033130_SNP [dm3] 2R_11145625_SNP [dm6]	A	G	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033131	2R_7033131_SNP [dm3] 2R_11145626_SNP [dm6]	C	A	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033137	2R_7033137_DEL [dm3] 2R_11145632_DEL [dm6]	TTA	T	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033142	2R_7033142_SNP [dm3] 2R_11145637_SNP [dm6]	A	C	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033148	2R_7033148_SNP [dm3] 2R_11145643_SNP [dm6]	T	G	1.058e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7586772	2L_7586772_SNP [dm3] 2L_7586772_SNP [dm6]	G	A	1.059e^-4	0.946	INTERGENIC
2R	11772441	2R_11772441_SNP [dm3] 2R_15884936_SNP [dm6]	A	C	1.065e^-4	0.946	INTRON sli
X	12295764	X_12295764_SNP [dm3] X_12401731_SNP [dm6]	C	T	1.065e^-4	0.946	INTERGENIC
2R	9203492	2R_9203492_SNP [dm3] 2R_13315987_SNP [dm6]	G	A	1.067e^-4	0.946	INTERGENIC
X	20396944	X_20396944_SNP [dm3] X_20525917_SNP [dm6]	G	A	1.076e^-4	0.946	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
3R	6824710	3R_6824710_DEL [dm3] 3R_10998988_DEL [dm6]	CCAATA	C	1.079e^-4	0.946	INTRON CG34114
2L	11323303	2L_11323303_SNP [dm3] 2L_11323303_SNP [dm6]	T	A	1.093e^-4	0.946	INTERGENIC
3L	993063	3L_993063_SNP [dm3] 3L_993063_SNP [dm6]	G	C	1.097e^-4	0.946	UTR_3_PRIME Glut1 UPSTREAM CG12038
X	5601796	X_5601796_SNP [dm3] X_5707763_SNP [dm6]	T	C	1.101e^-4	0.946	SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9692022	3L_9692022_SNP [dm3] 3L_9698922_SNP [dm6]	T	G	1.107e^-4	0.946	INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3980120	2R_3980120_SNP [dm3] 2R_8092615_SNP [dm6]	A	G	1.116e^-4	0.946	INTRON CG8713	TF binding site BDTNP1_TFBS_twi
3L	11329889	3L_11329889_SNP [dm3] 3L_11336789_SNP [dm6]	G	T	1.119e^-4	0.946	INTERGENIC
2L	7482819	2L_7482819_SNP [dm3] 2L_7482819_SNP [dm6]	T	A	1.129e^-4	0.946	SYNONYMOUS_CODING Ziz
3L	7015002	3L_7015002_SNP [dm3] 3L_7021902_SNP [dm6]	C	G	1.131e^-4	0.946	INTRON Mp
3L	2993361	3L_2993361_SNP [dm3] 3L_2993361_SNP [dm6]	T	C	1.132e^-4	0.946	INTERGENIC
2L	7011346	2L_7011346_SNP [dm3] 2L_7011346_SNP [dm6]	G	A	1.135e^-4	0.946	UPSTREAM uif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	9058069	2R_9058069_SNP [dm3] 2R_13170564_SNP [dm6]	T	C	1.138e^-4	0.946	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142
2L	9175911	2L_9175911_SNP [dm3] 2L_9175911_SNP [dm6]	T	C	1.141e^-4	0.946	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8890204	X_8890204_SNP [dm3] X_8996171_SNP [dm6]	T	A	1.144e^-4	0.946	INTRON rdgA & 1 other
2R	11951878	2R_11951878_SNP [dm3] 2R_16064373_SNP [dm6]	T	C	1.146e^-4	0.946	DOWNSTREAM mir-137 INTERGENIC
3R	25270488	3R_25270488_SNP [dm3] 3R_29444766_SNP [dm6]	A	T	1.148e^-4	0.946	INTRON Ptp99A
2R	19019017	2R_19019017_SNP [dm3] 2R_23131494_SNP [dm6]	C	T	1.163e^-4	0.946	INTERGENIC
2L	2322640	2L_2322640_SNP [dm3] 2L_2322640_SNP [dm6]	A	G	1.167e^-4	0.946	INTRON CG9967 & 1 other
3L	17060291	3L_17060291_SNP [dm3] 3L_17067191_SNP [dm6]	C	G	1.170e^-4	0.946	SYNONYMOUS_CODING Rbp6 UTR_3_PRIME Rbp6
X	22062694	X_22062694_SNP [dm3] X_22660858_SNP [dm6]	T	A	1.173e^-4	0.946	INTRON CR44997
3L	12062627	3L_12062627_SNP [dm3] 3L_12069527_SNP [dm6]	T	A	1.179e^-4	0.946	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13202518	3R_13202518_SNP [dm3] 3R_17376796_SNP [dm6]	T	C	1.188e^-4	0.946	INTRON Brf
2L	9596512	2L_9596512_SNP [dm3] 2L_9596512_SNP [dm6]	T	A	1.192e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16749603	3R_16749603_SNP [dm3] 3R_20923881_SNP [dm6]	T	C	1.199e^-4	0.946	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2R	7033127	2R_7033127_SNP [dm3] 2R_11145622_SNP [dm6]	T	C	1.209e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033143	2R_7033143_SNP [dm3] 2R_11145638_SNP [dm6]	C	T	1.210e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4187113	3L_4187113_SNP [dm3] 3L_4187113_SNP [dm6]	T	G	1.211e^-4	0.946	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	7411093	3L_7411093_SNP [dm3] 3L_7417993_SNP [dm6]	T	G	1.219e^-4	0.946	INTERGENIC
2R	12861679	2R_12861679_SNP [dm3] 2R_16974174_SNP [dm6]	C	T	1.220e^-4	0.946	INTRON Cbp53E
3R	15277868	3R_15277868_SNP [dm3] 3R_19452146_SNP [dm6]	C	A	1.221e^-4	0.946	INTRON CG31221
3L	6270192	3L_6270192_DEL [dm3] 3L_6277092_DEL [dm6]	CTCCTTTAC	A	1.221e^-4	0.946	DOWNSTREAM CG43168 INTERGENIC
3R	17047983	3R_17047983_SNP [dm3] 3R_21222261_SNP [dm6]	G	A	1.224e^-4	0.946	SYNONYMOUS_CODING Oga DOWNSTREAM CG3337	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9058122	2R_9058122_DEL [dm3] 2R_13170617_DEL [dm6]	CTTGCACTTGCTCTTTGCA...	C	1.234e^-4	0.946	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13619935	X_13619935_SNP [dm3] X_13725902_SNP [dm6]	C	A	1.234e^-4	0.946	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	16416266	X_16416266_SNP [dm3] X_16522233_SNP [dm6]	T	G	1.240e^-4	0.946	DOWNSTREAM Cnx14D INTRON para
2L	7586764	2L_7586764_SNP [dm3] 2L_7586764_SNP [dm6]	A	T	1.240e^-4	0.946	INTERGENIC
2L	6771755	2L_6771755_SNP [dm3] 2L_6771755_SNP [dm6]	A	T	1.257e^-4	0.946	UPSTREAM CG11321 INTRON CG11321
3L	4410480	3L_4410480_SNP [dm3] 3L_4410480_SNP [dm6]	C	T	1.258e^-4	0.946	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	9568280	3R_9568280_DEL [dm3] 3R_13742558_DEL [dm6]	GGCAAAG	G	1.262e^-4	0.946	INTRON CG34383
3L	6270160	3L_6270160_SNP [dm3] 3L_6277060_SNP [dm6]	A	T	1.267e^-4	0.946	DOWNSTREAM CG43168 INTERGENIC
2L	1015286	2L_1015286_SNP [dm3] 2L_1015286_SNP [dm6]	G	A	1.272e^-4	0.946	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11189143	3R_11189143_SNP [dm3] 3R_15363421_SNP [dm6]	T	C	1.280e^-4	0.946	SYNONYMOUS_CODING CG6171 DOWNSTREAM CG34404 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3715510	X_3715510_SNP [dm3] X_3821477_SNP [dm6]	G	T	1.284e^-4	0.946	INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18287024	2L_18287024_SNP [dm3] 2L_18287024_SNP [dm6]	A	T	1.286e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12068001	3L_12068001_SNP [dm3] 3L_12074901_SNP [dm6]	A	G	1.288e^-4	0.946	INTRON Sema-5c
2R	7632791	2R_7632791_SNP [dm3] 2R_11745286_SNP [dm6]	A	T	1.306e^-4	0.946	INTERGENIC
3L	3934588	3L_3934588_SNP [dm3] 3L_3934588_SNP [dm6]	A	T	1.309e^-4	0.946	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
X	13701109	X_13701109_SNP [dm3] X_13807076_SNP [dm6]	C	T	1.322e^-4	0.946	UTR_3_PRIME inaE INTRON inaE
2L	15409306	2L_15409306_SNP [dm3] 2L_15409306_SNP [dm6]	C	A	1.334e^-4	0.946	INTERGENIC
2L	3770594	2L_3770594_SNP [dm3] 2L_3770594_SNP [dm6]	T	A	1.335e^-4	0.946	UPSTREAM CR43704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	21652103	3R_21652103_SNP [dm3] 3R_25826381_SNP [dm6]	G	C	1.335e^-4	0.946	INTERGENIC
2R	9127191	2R_9127191_SNP [dm3] 2R_13239686_SNP [dm6]	G	A	1.345e^-4	0.946	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2566006	3L_2566006_SNP [dm3] 3L_2566006_SNP [dm6]	A	G	1.350e^-4	0.946	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9693583	3L_9693583_SNP [dm3] 3L_9700483_SNP [dm6]	C	T	1.355e^-4	0.946	DOWNSTREAM CG6761 & 1 other INTERGENIC
X	15401536	X_15401536_SNP [dm3] X_15507503_SNP [dm6]	G	A	1.358e^-4	0.946	NON_SYNONYMOUS_CODING Gmap UPSTREAM mir-283
X	6934450	X_6934450_SNP [dm3] X_7040417_SNP [dm6]	A	C	1.358e^-4	0.946	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5547157	3L_5547157_INS [dm3] 3L_5554057_INS [dm6]	T	TGTCGGGCGAGTCTACTGGA...	1.358e^-4	0.946	INTERGENIC
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	1.365e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	637767	2L_637767_SNP [dm3] 2L_637767_SNP [dm6]	G	A	1.371e^-4	0.946	INTERGENIC
2L	10133090	2L_10133090_SNP [dm3] 2L_10133090_SNP [dm6]	G	A	1.379e^-4	0.946	INTRON CG44153
3R	13892206	3R_13892206_INS [dm3] 3R_18066484_INS [dm6]	A	AA	1.384e^-4	0.946	INTERGENIC
2L	15291282	2L_15291282_SNP [dm3] 2L_15291282_SNP [dm6]	A	C	1.385e^-4	0.946	DOWNSTREAM CG15260 INTERGENIC
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	1.387e^-4	0.946	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
3L	11169031	3L_11169031_SNP [dm3] 3L_11175931_SNP [dm6]	A	G	1.395e^-4	0.946	UTR_3_PRIME CG14142	TF binding site mE1_TFBS_cad
3L	1765356	3L_1765356_SNP [dm3] 3L_1765356_SNP [dm6]	A	G	1.400e^-4	0.946	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	1.403e^-4	0.946	SYNONYMOUS_CODING Brf
3R	17996927	3R_17996927_INS [dm3] 3R_22171205_INS [dm6]	A	ACAT	1.403e^-4	0.946	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7995160	X_7995160_SNP [dm3] X_8101127_SNP [dm6]	T	G	1.416e^-4	0.946	UTR_5_PRIME CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6270259	3L_6270259_SNP [dm3] 3L_6277159_SNP [dm6]	G	T	1.419e^-4	0.946	DOWNSTREAM CG43168 INTERGENIC
2L	6771751	2L_6771751_SNP [dm3] 2L_6771751_SNP [dm6]	C	T	1.422e^-4	0.946	UPSTREAM CG11321 INTRON CG11321
2L	894413	2L_894413_SNP [dm3] 2L_894413_SNP [dm6]	T	C	1.430e^-4	0.946	INTERGENIC
2R	10331430	2R_10331430_SNP [dm3] 2R_14443925_SNP [dm6]	A	T	1.442e^-4	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3R	4380679	3R_4380679_DEL [dm3] 3R_8554957_DEL [dm6]	CC	C	1.444e^-4	0.946	DOWNSTREAM Or85d INTERGENIC
2L	16005500	2L_16005500_SNP [dm3] 2L_16005500_SNP [dm6]	G	A	1.445e^-4	0.946	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	15745364	3L_15745364_SNP [dm3] 3L_15752264_SNP [dm6]	A	T	1.447e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5377811	3L_5377811_SNP [dm3] 3L_5384711_SNP [dm6]	T	A	1.449e^-4	0.946	INTERGENIC
3L	4371790	3L_4371790_INS [dm3] 3L_4371790_INS [dm6]	A	AT	1.450e^-4	0.946	UTR_5_PRIME DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13485580	2R_13485580_DEL [dm3] 2R_17598075_DEL [dm6]	TGGT	T	1.451e^-4	0.946	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi
2L	5974480	2L_5974480_SNP [dm3] 2L_5974480_SNP [dm6]	T	G	1.453e^-4	0.946	INTRON chic
2R	17935957	2R_17935957_SNP [dm3] 2R_22048452_SNP [dm6]	A	T	1.453e^-4	0.946	INTERGENIC
2R	17672659	2R_17672659_SNP [dm3] 2R_21785154_SNP [dm6]	C	G	1.457e^-4	0.946	INTERGENIC
3L	12435984	3L_12435984_SNP [dm3] 3L_12442884_SNP [dm6]	T	C	1.466e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26079872	3R_26079872_SNP [dm3] 3R_30254150_SNP [dm6]	G	A	1.471e^-4	0.946	DOWNSTREAM CG18404 INTERGENIC
2L	15399506	2L_15399506_SNP [dm3] 2L_15399506_SNP [dm6]	A	G	1.478e^-4	0.946	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
3R	11187867	3R_11187867_SNP [dm3] 3R_15362145_SNP [dm6]	C	T	1.480e^-4	0.946	SYNONYMOUS_CODING Trax UPSTREAM ldlCp DOWNSTREAM CG6171	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15452269	2R_15452269_SNP [dm3] 2R_19564764_SNP [dm6]	G	A	1.484e^-4	0.946	DOWNSTREAM tRNA:CR33535 INTRON sm
2L	7586765	2L_7586765_SNP [dm3] 2L_7586765_SNP [dm6]	A	T	1.493e^-4	0.946	INTERGENIC
2L	3177921	2L_3177921_SNP [dm3] 2L_3177921_SNP [dm6]	C	T	1.494e^-4	0.946	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18600033	3R_18600033_SNP [dm3] 3R_22774311_SNP [dm6]	C	A	1.502e^-4	0.946	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	19413447	3R_19413447_SNP [dm3] 3R_23587725_SNP [dm6]	G	A	1.518e^-4	0.946	SYNONYMOUS_CODING CG10182
2R	15287469	2R_15287469_SNP [dm3] 2R_19399964_SNP [dm6]	G	A	1.525e^-4	0.946	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
X	14463536	X_14463536_SNP [dm3] X_14569503_SNP [dm6]	C	A	1.527e^-4	0.946	INTERGENIC
3L	995204	3L_995204_SNP [dm3] 3L_995204_SNP [dm6]	C	A	1.544e^-4	0.946	NON_SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	18301721	2L_18301721_SNP [dm3] 2L_18301721_SNP [dm6]	A	G	1.557e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3795846	3L_3795846_SNP [dm3] 3L_3795846_SNP [dm6]	A	T	1.558e^-4	0.946	UPSTREAM CG32264 INTRON CG32264
2R	18557843	2R_18557843_SNP [dm3] 2R_22670338_SNP [dm6]	C	A	1.559e^-4	0.946	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5107266	2L_5107266_SNP [dm3] 2L_5107266_SNP [dm6]	G	C	1.560e^-4	0.946	INTRON Msp300	TF binding site mE1_TFBS_Trl
2L	15409293	2L_15409293_SNP [dm3] 2L_15409293_SNP [dm6]	A	T	1.560e^-4	0.946	INTERGENIC
2L	10308060	2L_10308060_SNP [dm3] 2L_10308060_SNP [dm6]	T	A	1.565e^-4	0.946	DOWNSTREAM Cdk5alpha & 1 other INTERGENIC
2R	10083310	2R_10083310_SNP [dm3] 2R_14195805_SNP [dm6]	G	A	1.571e^-4	0.946	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
2R	17909628	2R_17909628_SNP [dm3] 2R_22022123_SNP [dm6]	A	G	1.589e^-4	0.946	INTRON CG34370
X	20312624	X_20312624_SNP [dm3] X_20441597_SNP [dm6]	A	T	1.591e^-4	0.946	NON_SYNONYMOUS_CODING CG1695	TF binding site mE1_TFBS_chinmo
2L	20143408	2L_20143408_DEL [dm3] 2L_20143408_DEL [dm6]	GCGGAGGCGAG...	G	1.598e^-4	0.946	INTERGENIC
X	4229182	X_4229182_SNP [dm3] X_4335149_SNP [dm6]	T	G	1.609e^-4	0.946	INTRON norpA
3R	13892344	3R_13892344_SNP [dm3] 3R_18066622_SNP [dm6]	A	T	1.613e^-4	0.946	INTERGENIC
4	278587	4_278587_SNP [dm3] 4_257961_SNP [dm6]	T	C	1.617e^-4	0.946	INTRON RhoGAP102A
3R	25504580	3R_25504580_SNP [dm3] 3R_29678858_SNP [dm6]	T	C	1.617e^-4	0.946	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
2L	14359958	2L_14359958_SNP [dm3] 2L_14359958_SNP [dm6]	A	C	1.618e^-4	0.946	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7008310	2L_7008310_SNP [dm3] 2L_7008310_SNP [dm6]	G	A	1.620e^-4	0.946	INTRON uif	TF binding site BDTNP1_TFBS_hb
X	9296645	X_9296645_SNP [dm3] X_9402612_SNP [dm6]	A	C	1.621e^-4	0.946	INTRON mgl
3L	3312935	3L_3312935_SNP [dm3] 3L_3312935_SNP [dm6]	G	A	1.651e^-4	0.946	NON_SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad
3R	17997035	3R_17997035_SNP [dm3] 3R_22171313_SNP [dm6]	G	C	1.652e^-4	0.946	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3940103	3L_3940103_SNP [dm3] 3L_3940103_SNP [dm6]	G	A	1.658e^-4	0.946	UTR_5_PRIME CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
3R	19339560	3R_19339560_DEL [dm3] 3R_23513838_DEL [dm6]	GATATG	G	1.661e^-4	0.946	UTR_3_PRIME Irk2 DOWNSTREAM Irk2
3R	15369274	3R_15369274_SNP [dm3] 3R_19543552_SNP [dm6]	A	C	1.680e^-4	0.946	INTRON Dys
3R	15369277	3R_15369277_SNP [dm3] 3R_19543555_SNP [dm6]	G	A	1.680e^-4	0.946	INTRON Dys
2L	8366973	2L_8366973_SNP [dm3] 2L_8366973_SNP [dm6]	G	T	1.681e^-4	0.946	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
4	281724	4_281724_SNP [dm3] 4_261098_SNP [dm6]	T	C	1.681e^-4	0.946	INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl
2R	11425640	2R_11425640_SNP [dm3] 2R_15538135_SNP [dm6]	C	A	1.686e^-4	0.946	UPSTREAM CG30467 DOWNSTREAM CG30471 INTERGENIC
3R	12370831	3R_12370831_SNP [dm3] 3R_16545109_SNP [dm6]	G	T	1.688e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12435920	3L_12435920_SNP [dm3] 3L_12442820_SNP [dm6]	C	G	1.699e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3119592	2L_3119592_DEL [dm3] 2L_3119592_DEL [dm6]	GGCCTTCCAGCTTGTTCCTG...	G	1.700e^-4	0.946	INTRON toc
3L	3939295	3L_3939295_SNP [dm3] 3L_3939295_SNP [dm6]	T	A	1.706e^-4	0.946	NON_SYNONYMOUS_CODING CG12766	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9497507	2L_9497507_SNP [dm3] 2L_9497507_SNP [dm6]	T	C	1.708e^-4	0.946	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7616233	3L_7616233_SNP [dm3] 3L_7623133_SNP [dm6]	C	T	1.713e^-4	0.946	INTRON CG33275	TF binding site BDTNP1_TFBS_dl
X	21838459	X_21838459_SNP [dm3] X_22436624_SNP [dm6]	G	A	1.719e^-4	0.946	INTERGENIC
X	7001469	X_7001469_SNP [dm3] X_7107436_SNP [dm6]	T	A	1.723e^-4	0.946	NON_SYNONYMOUS_CODING fz4
2L	14359962	2L_14359962_SNP [dm3] 2L_14359962_SNP [dm6]	T	C	1.728e^-4	0.946	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	681212	3L_681212_SNP [dm3] 3L_681212_SNP [dm6]	G	A	1.734e^-4	0.946	SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9204961	X_9204961_SNP [dm3] X_9310928_SNP [dm6]	T	A	1.738e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3792643	2L_3792643_SNP [dm3] 2L_3792643_SNP [dm6]	C	G	1.740e^-4	0.946	SYNONYMOUS_CODING CG3921
2L	7263751	2L_7263751_SNP [dm3] 2L_7263751_SNP [dm6]	C	T	1.741e^-4	0.946	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12370809	3R_12370809_SNP [dm3] 3R_16545087_SNP [dm6]	G	A	1.754e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	1.756e^-4	0.946	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2R	792718	2R_792718_SNP [dm3] 2R_4905213_SNP [dm6]	C	A	1.769e^-4	0.946	INTRON CG44102	transposable element FlyBase
4	277101	4_277101_SNP [dm3] 4_256475_SNP [dm6]	G	A	1.776e^-4	0.946	NON_SYNONYMOUS_CODING RhoGAP102A
3L	10647530	3L_10647530_SNP [dm3] 3L_10654430_SNP [dm6]	A	T	1.779e^-4	0.946	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1824544	2R_1824544_SNP [dm3] 2R_5937039_SNP [dm6]	A	T	1.783e^-4	0.946	UPSTREAM CR44126 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	951632	3L_951632_SNP [dm3] 3L_951632_SNP [dm6]	A	T	1.785e^-4	0.946	INTRON Glut1
2L	3487582	2L_3487582_SNP [dm3] 2L_3487582_SNP [dm6]	T	C	1.789e^-4	0.946	INTRON CG15414
2L	3337515	2L_3337515_SNP [dm3] 2L_3337515_SNP [dm6]	G	A	1.806e^-4	0.946	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9197030	2R_9197030_SNP [dm3] 2R_13309525_SNP [dm6]	G	A	1.815e^-4	0.946	INTERGENIC
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	1.821e^-4	0.946	INTRON CG42747
3L	10921289	3L_10921289_SNP [dm3] 3L_10928189_SNP [dm6]	G	T	1.821e^-4	0.946	INTERGENIC
2L	6813705	2L_6813705_SNP [dm3] 2L_6813705_SNP [dm6]	C	T	1.829e^-4	0.946	DOWNSTREAM CR44081 INTERGENIC
3L	3941215	3L_3941215_SNP [dm3] 3L_3941215_SNP [dm6]	A	C	1.830e^-4	0.946	SYNONYMOUS_CODING CG10863 EXON CR43916
2L	20546230	2L_20546230_SNP [dm3] 2L_20546230_SNP [dm6]	G	A	1.838e^-4	0.946	INTERGENIC
4	290392	4_290392_DEL [dm3] 4_269766_DEL [dm6]	TA	C	1.853e^-4	0.946	UTR_3_PRIME NfI
2R	7587130	2R_7587130_SNP [dm3] 2R_11699625_SNP [dm6]	C	A	1.853e^-4	0.946	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11772430	2R_11772430_SNP [dm3] 2R_15884925_SNP [dm6]	T	A	1.854e^-4	0.946	INTRON sli
2L	16193933	2L_16193933_SNP [dm3] 2L_16193933_SNP [dm6]	G	A	1.867e^-4	0.946	INTERGENIC
3R	13058539	3R_13058539_SNP [dm3] 3R_17232817_SNP [dm6]	T	C	1.869e^-4	0.946	SYNONYMOUS_CODING beat-IIb
3R	4722453	3R_4722453_SNP [dm3] 3R_8896731_SNP [dm6]	A	G	1.870e^-4	0.946	INTRON pyd	TF binding site mE1_TFBS_Trl
X	12095966	X_12095966_SNP [dm3] X_12201933_SNP [dm6]	G	T	1.873e^-4	0.946	INTRON Ten-a
3L	9246684	3L_9246684_SNP [dm3] 3L_9253584_SNP [dm6]	C	T	1.878e^-4	0.946	INTRON GluRIB
2L	11323298	2L_11323298_SNP [dm3] 2L_11323298_SNP [dm6]	G	A	1.886e^-4	0.946	INTERGENIC
2R	17136545	2R_17136545_DEL [dm3] 2R_21249040_DEL [dm6]	AA	A	1.889e^-4	0.946	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9930097	X_9930097_SNP [dm3] X_10036064_SNP [dm6]	A	C	1.890e^-4	0.946	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8710374	2L_8710374_SNP [dm3] 2L_8710374_SNP [dm6]	A	G	1.891e^-4	0.946	UTR_3_PRIME raw UPSTREAM Hnf4
2L	7263760	2L_7263760_SNP [dm3] 2L_7263760_SNP [dm6]	T	C	1.897e^-4	0.946	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4719714	2L_4719714_SNP [dm3] 2L_4719714_SNP [dm6]	A	G	1.906e^-4	0.946	INTRON CG34351	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	15670137	3L_15670137_SNP [dm3] 3L_15677037_SNP [dm6]	C	T	1.922e^-4	0.946	INTERGENIC
X	12404897	X_12404897_SNP [dm3] X_12510864_SNP [dm6]	G	A	1.927e^-4	0.946	INTRON CG2556
2L	3487575	2L_3487575_SNP [dm3] 2L_3487575_SNP [dm6]	T	C	1.928e^-4	0.946	INTRON CG15414
3R	14840941	3R_14840941_SNP [dm3] 3R_19015219_SNP [dm6]	C	T	1.929e^-4	0.946	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8710375	2L_8710375_SNP [dm3] 2L_8710375_SNP [dm6]	T	G	1.943e^-4	0.946	UTR_3_PRIME raw UPSTREAM Hnf4
2L	1597623	2L_1597623_SNP [dm3] 2L_1597623_SNP [dm6]	A	C	1.950e^-4	0.946	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
2L	2895485	2L_2895485_SNP [dm3] 2L_2895485_SNP [dm6]	G	A	1.957e^-4	0.946	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6055625	3L_6055625_SNP [dm3] 3L_6062525_SNP [dm6]	T	G	1.957e^-4	0.946	SYNONYMOUS_CODING CG10472	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3949365	3L_3949365_SNP [dm3] 3L_3949365_SNP [dm6]	T	C	1.970e^-4	0.946	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
2L	7197285	2L_7197285_SNP [dm3] 2L_7197285_SNP [dm6]	G	A	1.977e^-4	0.946	INTRON CG4502
X	3248278	X_3248278_SNP [dm3] X_3354245_SNP [dm6]	C	T	1.979e^-4	0.946	INTERGENIC
2R	796193	2R_796193_SNP [dm3] 2R_4908688_SNP [dm6]	T	A	1.985e^-4	0.946	INTERGENIC
3R	14322070	3R_14322070_SNP [dm3] 3R_18496348_SNP [dm6]	T	C	1.989e^-4	0.946	INTRON fru
2L	11769995	2L_11769995_SNP [dm3] 2L_11769995_SNP [dm6]	T	C	1.992e^-4	0.946	INTERGENIC
3L	6398605	3L_6398605_SNP [dm3] 3L_6405505_SNP [dm6]	A	C	2.013e^-4	0.946	INTRON CG42747
4	330039	4_330039_SNP [dm3] 4_309413_SNP [dm6]	A	G	2.019e^-4	0.946	INTRON Rad23	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15580915	2R_15580915_SNP [dm3] 2R_19693410_SNP [dm6]	T	C	2.021e^-4	0.946	EXON CR44506
3L	1899508	3L_1899508_SNP [dm3] 3L_1899508_SNP [dm6]	C	T	2.038e^-4	0.946	DOWNSTREAM CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_da
X	3145245	X_3145245_SNP [dm3] X_3251212_SNP [dm6]	G	T	2.048e^-4	0.946	DOWNSTREAM Sgs4 INTRON dnc
2L	9462182	2L_9462182_SNP [dm3] 2L_9462182_SNP [dm6]	C	A	2.060e^-4	0.946	SYNONYMOUS_CODING numb	TF binding site mE1_TFBS_cad
3L	3938252	3L_3938252_DEL [dm3] 3L_3938252_DEL [dm6]	AA	A	2.079e^-4	0.946	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
X	5832498	X_5832498_SNP [dm3] X_5938465_SNP [dm6]	G	A	2.084e^-4	0.946	INTRON CG3726
2L	8367076	2L_8367076_SNP [dm3] 2L_8367076_SNP [dm6]	A	T	2.097e^-4	0.946	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	993082	3L_993082_SNP [dm3] 3L_993082_SNP [dm6]	G	A	2.104e^-4	0.946	UTR_3_PRIME Glut1 UPSTREAM CG12038
3R	25313021	3R_25313021_SNP [dm3] 3R_29487299_SNP [dm6]	A	G	2.111e^-4	0.946	SPLICE_SITE_REGION CG2321 DOWNSTREAM Ptp99A INTRON CG2321
3R	26438659	3R_26438659_SNP [dm3] 3R_30612937_SNP [dm6]	C	A	2.112e^-4	0.946	UPSTREAM CR45571 EXON CR45571
2R	8790544	2R_8790544_SNP [dm3] 2R_12903039_SNP [dm6]	C	G	2.121e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9048892	2R_9048892_SNP [dm3] 2R_13161387_SNP [dm6]	T	C	2.124e^-4	0.946	SYNONYMOUS_CODING Nrk	TF binding site BDTNP1_TFBS_twi
2R	17145609	2R_17145609_SNP [dm3] 2R_21258104_SNP [dm6]	G	T	2.131e^-4	0.946	INTRON Rgk3
X	15401150	X_15401150_SNP [dm3] X_15507117_SNP [dm6]	G	A	2.143e^-4	0.946	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10801416	2L_10801416_SNP [dm3] 2L_10801416_SNP [dm6]	C	A	2.163e^-4	0.946	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	638256	2L_638256_SNP [dm3] 2L_638256_SNP [dm6]	G	T	2.166e^-4	0.946	INTERGENIC
2L	5965446	2L_5965446_SNP [dm3] 2L_5965446_SNP [dm6]	C	G	2.170e^-4	0.946	UTR_3_PRIME CG13992 UPSTREAM psd
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	2.179e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_Kr
2R	10326057	2R_10326057_SNP [dm3] 2R_14438552_SNP [dm6]	T	C	2.187e^-4	0.946	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14286063	2L_14286063_SNP [dm3] 2L_14286063_SNP [dm6]	T	C	2.192e^-4	0.946	SYNONYMOUS_CODING wb
X	4229675	X_4229675_SNP [dm3] X_4335642_SNP [dm6]	A	G	2.193e^-4	0.946	INTRON norpA
X	20452530	X_20452530_SNP [dm3] X_20581503_SNP [dm6]	G	A	2.201e^-4	0.946	INTERGENIC
3R	12836707	3R_12836707_SNP [dm3] 3R_17010985_SNP [dm6]	T	G	2.206e^-4	0.946	INTRON CG8907
2R	798766	2R_798766_SNP [dm3] 2R_4911261_SNP [dm6]	G	A	2.208e^-4	0.946	INTERGENIC	transposable element FlyBase
3L	5485885	3L_5485885_SNP [dm3] 3L_5492785_SNP [dm6]	C	T	2.210e^-4	0.946	DOWNSTREAM CR44520 INTERGENIC
X	16153517	X_16153517_SNP [dm3] X_16259484_SNP [dm6]	T	G	2.211e^-4	0.946	INTERGENIC
2R	6676476	2R_6676476_SNP [dm3] 2R_10788971_SNP [dm6]	G	A	2.212e^-4	0.946	INTRON CG33144
3R	15278153	3R_15278153_SNP [dm3] 3R_19452431_SNP [dm6]	G	A	2.212e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9219492	2R_9219492_SNP [dm3] 2R_13331987_SNP [dm6]	T	C	2.215e^-4	0.946	INTRON CR44206
3L	5426743	3L_5426743_SNP [dm3] 3L_5433643_SNP [dm6]	G	A	2.218e^-4	0.946	INTRON CG34391
2L	3549324	2L_3549324_SNP [dm3] 2L_3549324_SNP [dm6]	C	T	2.220e^-4	0.946	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
4	255510	4_255510_SNP [dm3] 4_234884_SNP [dm6]	C	T	2.235e^-4	0.946	SYNONYMOUS_CODING CG1674 INTRON CG1674
X	7994655	X_7994655_SNP [dm3] X_8100622_SNP [dm6]	A	G	2.241e^-4	0.946	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	1126781	2R_1126781_SNP [dm3] 2R_5239276_SNP [dm6]	G	T	2.245e^-4	0.946	INTRON Nipped-A	transposable element FlyBase
3R	22019037	3R_22019037_INS [dm3] 3R_26193315_INS [dm6]	T	TT	2.263e^-4	0.946	INTERGENIC
2L	2644931	2L_2644931_SNP [dm3] 2L_2644931_SNP [dm6]	A	C	2.271e^-4	0.946	INTERGENIC
3L	4186998	3L_4186998_SNP [dm3] 3L_4186998_SNP [dm6]	A	T	2.274e^-4	0.946	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7791880	2L_7791880_SNP [dm3] 2L_7791880_SNP [dm6]	A	G	2.277e^-4	0.946	INTRON LKR
3R	13199874	3R_13199874_SNP [dm3] 3R_17374152_SNP [dm6]	G	A	2.292e^-4	0.946	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2458002	X_2458002_SNP [dm3] X_2563969_SNP [dm6]	G	A	2.295e^-4	0.946	INTRON Pdfr	TF binding site mE1_TFBS_inv
X	13964633	X_13964633_SNP [dm3] X_14070600_SNP [dm6]	G	C	2.295e^-4	0.946	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	18554535	3L_18554535_SNP [dm3] 3L_18561435_SNP [dm6]	T	G	2.299e^-4	0.946	INTRON AstC-R1	TF binding site mE1_TFBS_cad
2L	13477644	2L_13477644_SNP [dm3] 2L_13477644_SNP [dm6]	C	T	2.303e^-4	0.946	INTRON CG42784
2L	4156207	2L_4156207_SNP [dm3] 2L_4156207_SNP [dm6]	A	G	2.304e^-4	0.946	INTERGENIC
2L	3487663	2L_3487663_SNP [dm3] 2L_3487663_SNP [dm6]	C	G	2.312e^-4	0.946	INTRON CG15414
2R	15763181	2R_15763181_SNP [dm3] 2R_19875676_SNP [dm6]	A	T	2.325e^-4	0.946	INTERGENIC
2R	15769182	2R_15769182_SNP [dm3] 2R_19881677_SNP [dm6]	T	A	2.328e^-4	0.946	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19049486	2L_19049486_SNP [dm3] 2L_19049486_SNP [dm6]	C	T	2.335e^-4	0.946	SYNONYMOUS_CODING CG10470 DOWNSTREAM Acn & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4792626	3L_4792626_SNP [dm3] 3L_4792626_SNP [dm6]	C	T	2.335e^-4	0.946	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	497147	3L_497147_SNP [dm3] 3L_497147_SNP [dm6]	T	C	2.338e^-4	0.946	INTRON klar
2R	16023282	2R_16023282_SNP [dm3] 2R_20135777_SNP [dm6]	G	T	2.347e^-4	0.946	INTERGENIC
2L	2895504	2L_2895504_DEL [dm3] 2L_2895504_DEL [dm6]	AA	A	2.348e^-4	0.946	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12125055	3L_12125055_SNP [dm3] 3L_12131955_SNP [dm6]	T	C	2.350e^-4	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1888490	2L_1888490_SNP [dm3] 2L_1888490_SNP [dm6]	G	A	2.360e^-4	0.946	INTRON CG7337
3L	1022581	3L_1022581_SNP [dm3] 3L_1022581_SNP [dm6]	T	C	2.367e^-4	0.946	INTRON trio
2R	14703807	2R_14703807_SNP [dm3] 2R_18816302_SNP [dm6]	A	T	2.370e^-4	0.946	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
2L	7161020	2L_7161020_SNP [dm3] 2L_7161020_SNP [dm6]	G	A	2.371e^-4	0.946	INTERGENIC
2R	19018129	2R_19018129_SNP [dm3] 2R_23130606_SNP [dm6]	C	G	2.380e^-4	0.946	UPSTREAM CG3215 INTERGENIC
3R	20670573	3R_20670573_SNP [dm3] 3R_24844851_SNP [dm6]	C	A	2.386e^-4	0.946	INTRON Esp
3R	26058045	3R_26058045_SNP [dm3] 3R_30232323_SNP [dm6]	C	T	2.391e^-4	0.946	INTERGENIC
2L	5748230	2L_5748230_SNP [dm3] 2L_5748230_SNP [dm6]	T	C	2.394e^-4	0.946	DOWNSTREAM CG11029 INTRON CG11030
3L	17220503	3L_17220503_SNP [dm3] 3L_17227403_SNP [dm6]	C	A	2.402e^-4	0.946	INTRON Rbp6
X	16163887	X_16163887_SNP [dm3] X_16269854_SNP [dm6]	C	T	2.404e^-4	0.946	INTRON kat80
3R	18457570	3R_18457570_SNP [dm3] 3R_22631848_SNP [dm6]	G	A	2.409e^-4	0.946	INTRON loco	regulatory region REDfly_CRMs
3L	5426653	3L_5426653_SNP [dm3] 3L_5433553_SNP [dm6]	C	A	2.409e^-4	0.946	INTRON CG34391
3L	6270238	3L_6270238_SNP [dm3] 3L_6277138_SNP [dm6]	A	T	2.440e^-4	0.946	DOWNSTREAM CG43168 INTERGENIC
2L	3272656	2L_3272656_INS [dm3] 2L_3272656_INS [dm6]	T	TTATCTTATTACCGCGT...	2.444e^-4	0.946	DOWNSTREAM CG3347 INTERGENIC
2L	14312303	2L_14312303_SNP [dm3] 2L_14312303_SNP [dm6]	A	C	2.459e^-4	0.946	INTRON wb
2R	9058465	2R_9058465_SNP [dm3] 2R_13170960_SNP [dm6]	G	C	2.463e^-4	0.946	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19595698	2R_19595698_SNP [dm3] 2R_23708175_SNP [dm6]	C	T	2.464e^-4	0.946	NON_SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8086584	X_8086584_SNP [dm3] X_8192551_SNP [dm6]	C	G	2.464e^-4	0.946	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11422641	2R_11422641_SNP [dm3] 2R_15535136_SNP [dm6]	G	A	2.466e^-4	0.946	INTRON CG30471
2L	5652171	2L_5652171_SNP [dm3] 2L_5652171_SNP [dm6]	A	T	2.470e^-4	0.946	UTR_5_PRIME CG31646
2R	15287338	2R_15287338_SNP [dm3] 2R_19399833_SNP [dm6]	A	G	2.481e^-4	0.946	UTR_3_PRIME hts INTRON hts EXON CR43430
2R	11421863	2R_11421863_SNP [dm3] 2R_15534358_SNP [dm6]	A	G	2.482e^-4	0.946	INTRON CG30471
X	12622523	X_12622523_SNP [dm3] X_12728490_SNP [dm6]	A	T	2.482e^-4	0.946	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13137494	X_13137494_SNP [dm3] X_13243461_SNP [dm6]	C	A	2.499e^-4	0.946	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137495	X_13137495_SNP [dm3] X_13243462_SNP [dm6]	T	G	2.499e^-4	0.946	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6458826	3L_6458826_SNP [dm3] 3L_6465726_SNP [dm6]	T	A	2.504e^-4	0.946	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11856918	3L_11856918_SNP [dm3] 3L_11863818_SNP [dm6]	T	G	2.522e^-4	0.946	UPSTREAM CG44837 INTRON CG44837
2R	7911966	2R_7911966_SNP [dm3] 2R_12024461_SNP [dm6]	T	G	2.526e^-4	0.946	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16991762	3R_16991762_SNP [dm3] 3R_21166040_SNP [dm6]	A	C	2.527e^-4	0.946	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	9415771	2L_9415771_SNP [dm3] 2L_9415771_SNP [dm6]	A	C	2.531e^-4	0.946	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10525999	2L_10525999_SNP [dm3] 2L_10525999_SNP [dm6]	A	G	2.531e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	261520	4_261520_SNP [dm3] 4_240894_SNP [dm6]	C	T	2.536e^-4	0.946	UTR_3_PRIME CG1674 INTRON CG1674
3R	27646189	3R_27646189_SNP [dm3] 3R_31820467_SNP [dm6]	G	T	2.544e^-4	0.946	INTRON RhoGAP100F	TF binding site mE1_TFBS_chinmo
3R	3098171	3R_3098171_SNP [dm3] 3R_7272449_SNP [dm6]	G	T	2.548e^-4	0.946	SYNONYMOUS_CODING CG10032 DOWNSTREAM rn
2L	11400007	2L_11400007_SNP [dm3] 2L_11400007_SNP [dm6]	T	A	2.562e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
3R	13892221	3R_13892221_SNP [dm3] 3R_18066499_SNP [dm6]	G	T	2.576e^-4	0.946	INTERGENIC
2L	5699312	2L_5699312_SNP [dm3] 2L_5699312_SNP [dm6]	G	C	2.579e^-4	0.946	INTERGENIC
2R	17935048	2R_17935048_DEL [dm3] 2R_22047543_DEL [dm6]	ACA	A	2.587e^-4	0.946	INTERGENIC
2L	5965360	2L_5965360_SNP [dm3] 2L_5965360_SNP [dm6]	T	A	2.588e^-4	0.946	UPSTREAM psd DOWNSTREAM CG13992 INTERGENIC
X	10257633	X_10257633_SNP [dm3] X_10363600_SNP [dm6]	A	G	2.589e^-4	0.946	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
X	8971640	X_8971640_SNP [dm3] X_9077607_SNP [dm6]	G	A	2.592e^-4	0.946	INTRON CG44325
X	10613681	X_10613681_SNP [dm3] X_10719648_SNP [dm6]	C	G	2.604e^-4	0.946	INTRON CG32676
X	8644460	X_8644460_SNP [dm3] X_8750427_SNP [dm6]	T	C	2.609e^-4	0.946	INTERGENIC
2L	743122	2L_743122_SNP [dm3] 2L_743122_SNP [dm6]	G	A	2.615e^-4	0.946	INTRON Eaat2
X	12622467	X_12622467_SNP [dm3] X_12728434_SNP [dm6]	A	T	2.624e^-4	0.946	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3097722	2L_3097722_SNP [dm3] 2L_3097722_SNP [dm6]	G	A	2.634e^-4	0.946	INTRON toc
2L	8979759	2L_8979759_SNP [dm3] 2L_8979759_SNP [dm6]	T	G	2.645e^-4	0.946	UPSTREAM CG18662 INTRON CG13101
2L	4799591	2L_4799591_SNP [dm3] 2L_4799591_SNP [dm6]	A	C	2.654e^-4	0.946	INTRON Clect27	TF binding site mE1_TFBS_cad
2L	5699310	2L_5699310_SNP [dm3] 2L_5699310_SNP [dm6]	T	C	2.664e^-4	0.946	INTERGENIC
3R	12874837	3R_12874837_SNP [dm3] 3R_17049115_SNP [dm6]	T	G	2.665e^-4	0.946	DOWNSTREAM Patr-1 INTERGENIC
2L	15352006	2L_15352006_DEL [dm3] 2L_15352006_DEL [dm6]	GAAGAATTTTGATTTAAGAG...	G	2.668e^-4	0.946	INTERGENIC
2R	9310023	2R_9310023_SNP [dm3] 2R_13422518_SNP [dm6]	G	A	2.677e^-4	0.946	DOWNSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4404266	3R_4404266_SNP [dm3] 3R_8578544_SNP [dm6]	G	A	2.680e^-4	0.946	INTRON 5-HT2B
X	8087797	X_8087797_SNP [dm3] X_8193764_SNP [dm6]	C	A	2.701e^-4	0.946	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	13006718	X_13006718_SNP [dm3] X_13112685_SNP [dm6]	C	A	2.704e^-4	0.946	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13005944	X_13005944_DEL [dm3] X_13111911_DEL [dm6]	CCTGTTC	C	2.705e^-4	0.946	UTR_5_PRIME CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7911967	2R_7911967_SNP [dm3] 2R_12024462_SNP [dm6]	G	T	2.719e^-4	0.946	NON_SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7070909	2L_7070909_SNP [dm3] 2L_7070909_SNP [dm6]	T	C	2.734e^-4	0.946	SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad
3L	12062621	3L_12062621_SNP [dm3] 3L_12069521_SNP [dm6]	T	A	2.736e^-4	0.946	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1768197	3L_1768197_SNP [dm3] 3L_1768197_SNP [dm6]	C	G	2.738e^-4	0.946	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16566909	2R_16566909_SNP [dm3] 2R_20679404_SNP [dm6]	T	C	2.739e^-4	0.946	INTERGENIC
2R	3978780	2R_3978780_SNP [dm3] 2R_8091275_SNP [dm6]	T	C	2.745e^-4	0.946	UTR_3_PRIME sut3 UPSTREAM CG8713
X	8224010	X_8224010_SNP [dm3] X_8329977_SNP [dm6]	T	G	2.746e^-4	0.946	UTR_5_PRIME nAChRalpha3
3R	15278032	3R_15278032_SNP [dm3] 3R_19452310_SNP [dm6]	T	A	2.755e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	12370785	3R_12370785_SNP [dm3] 3R_16545063_SNP [dm6]	G	A	2.757e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	22643953	3L_22643953_SNP [dm3] 3L_22650853_SNP [dm6]	G	A	2.763e^-4	0.946	DOWNSTREAM CG33771 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3856590	2L_3856590_SNP [dm3] 2L_3856590_SNP [dm6]	C	T	2.765e^-4	0.946	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	17304939	X_17304939_INS [dm3] X_17410906_INS [dm6]	C	CACTC	2.774e^-4	0.946	INTERGENIC
3L	3566231	3L_3566231_SNP [dm3] 3L_3566231_SNP [dm6]	G	A	2.794e^-4	0.946	INTRON Eip63E
4	195457	4_195457_DEL [dm3] 4_174831_DEL [dm6]	GGTA	G	2.810e^-4	0.946	UPSTREAM CR45198
3L	2422418	3L_2422418_SNP [dm3] 3L_2422418_SNP [dm6]	T	C	2.813e^-4	0.946	INTRON CG45186
X	9492091	X_9492091_SNP [dm3] X_9598058_SNP [dm6]	T	A	2.815e^-4	0.946	INTERGENIC
2R	1921556	2R_1921556_SNP [dm3] 2R_6034051_SNP [dm6]	A	C	2.817e^-4	0.946	INTRON SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21198384	X_21198384_SNP [dm3] X_21327357_SNP [dm6]	C	G	2.820e^-4	0.946	NON_SYNONYMOUS_CODING CG1486
3L	3999340	3L_3999340_INS [dm3] 3L_3999340_INS [dm6]	T	TTATTTATT	2.823e^-4	0.946	INTERGENIC
3L	3936778	3L_3936778_SNP [dm3] 3L_3936778_SNP [dm6]	G	A	2.823e^-4	0.946	UTR_3_PRIME CG10866 DOWNSTREAM Eip63F-2	TF binding site mE1_TFBS_cad
3R	2373584	3R_2373584_SNP [dm3] 3R_6547862_SNP [dm6]	C	T	2.826e^-4	0.946	INTRON dpr11
3L	3262591	3L_3262591_SNP [dm3] 3L_3262591_SNP [dm6]	T	C	2.833e^-4	0.946	INTRON ckd
2L	14358947	2L_14358947_SNP [dm3] 2L_14358947_SNP [dm6]	C	A	2.851e^-4	0.946	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
4	295164	4_295164_SNP [dm3] 4_274538_SNP [dm6]	T	A	2.851e^-4	0.946	INTRON NfI
2R	11421553	2R_11421553_SNP [dm3] 2R_15534048_SNP [dm6]	G	A	2.852e^-4	0.946	INTRON CG30471
2L	5125959	2L_5125959_SNP [dm3] 2L_5125959_SNP [dm6]	C	A	2.861e^-4	0.946	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
2R	10326036	2R_10326036_SNP [dm3] 2R_14438531_SNP [dm6]	T	C	2.866e^-4	0.946	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8366972	2L_8366972_SNP [dm3] 2L_8366972_SNP [dm6]	T	G	2.872e^-4	0.946	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	14322508	3R_14322508_SNP [dm3] 3R_18496786_SNP [dm6]	T	C	2.873e^-4	0.946	INTRON fru	TF binding site mE1_TFBS_inv
2R	9196085	2R_9196085_SNP [dm3] 2R_13308580_SNP [dm6]	G	T	2.875e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6926256	2L_6926256_SNP [dm3] 2L_6926256_SNP [dm6]	T	C	2.881e^-4	0.946	UTR_3_PRIME Hrb27C DOWNSTREAM Hrb27C INTRON Hrb27C
3R	4395482	3R_4395482_SNP [dm3] 3R_8569760_SNP [dm6]	T	C	2.882e^-4	0.946	DOWNSTREAM Cenp-C INTERGENIC
3L	18935892	3L_18935892_SNP [dm3] 3L_18942792_SNP [dm6]	A	T	2.885e^-4	0.946	INTRON CG32204
3L	18935908	3L_18935908_DEL [dm3] 3L_18942808_DEL [dm6]	TTC	T	2.885e^-4	0.946	INTRON CG32204
2L	5381326	2L_5381326_SNP [dm3] 2L_5381326_SNP [dm6]	G	A	2.887e^-4	0.946	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25504118	3R_25504118_SNP [dm3] 3R_29678396_SNP [dm6]	A	C	2.902e^-4	0.946	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3202382	3L_3202382_SNP [dm3] 3L_3202382_SNP [dm6]	T	C	2.906e^-4	0.946	NON_SYNONYMOUS_CODING CG32271 INTRON gry	TF binding site mE1_TFBS_chinmo
2R	11845338	2R_11845338_SNP [dm3] 2R_15957833_SNP [dm6]	G	A	2.907e^-4	0.946	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15815238	X_15815238_SNP [dm3] X_15921205_SNP [dm6]	G	A	2.920e^-4	0.946	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
3L	10711427	3L_10711427_SNP [dm3] 3L_10718327_SNP [dm6]	A	T	2.922e^-4	0.946	INTERGENIC
2L	3445612	2L_3445612_SNP [dm3] 2L_3445612_SNP [dm6]	C	T	2.927e^-4	0.946	UPSTREAM CG2772 INTERGENIC
3L	14692566	3L_14692566_SNP [dm3] 3L_14699466_SNP [dm6]	G	A	2.927e^-4	0.946	UPSTREAM CG17177 INTRON ome & 1 other
3L	6780385	3L_6780385_SNP [dm3] 3L_6787285_SNP [dm6]	C	T	2.928e^-4	0.946	UPSTREAM CR45759 INTERGENIC
X	3465028	X_3465028_SNP [dm3] X_3570995_SNP [dm6]	C	G	2.928e^-4	0.946	NON_SYNONYMOUS_CODING ppk8 DOWNSTREAM CG2875 INTRON CG32791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3557778	2R_3557778_SNP [dm3] 2R_7670273_SNP [dm6]	G	T	2.929e^-4	0.946	DOWNSTREAM CG12826 INTERGENIC
3R	7168131	3R_7168131_SNP [dm3] 3R_11342409_SNP [dm6]	C	A	2.956e^-4	0.946	INTRON pros
X	5001456	X_5001456_SNP [dm3] X_5107423_SNP [dm6]	T	C	2.965e^-4	0.946	INTRON rg & 1 other
3L	12435956	3L_12435956_SNP [dm3] 3L_12442856_SNP [dm6]	T	A	2.970e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6449559	3L_6449559_SNP [dm3] 3L_6456459_SNP [dm6]	A	C	2.973e^-4	0.946	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
X	21827650	X_21827650_SNP [dm3] X_22425815_SNP [dm6]	C	A	2.978e^-4	0.946	INTERGENIC
3R	13980152	3R_13980152_SNP [dm3] 3R_18154430_SNP [dm6]	T	G	2.982e^-4	0.946	DOWNSTREAM CG14316 INTERGENIC
3R	5766644	3R_5766644_SNP [dm3] 3R_9940922_SNP [dm6]	C	T	2.994e^-4	0.946	INTRON Glut4EF
X	8224011	X_8224011_SNP [dm3] X_8329978_SNP [dm6]	T	C	2.998e^-4	0.946	UTR_5_PRIME nAChRalpha3
3L	14115316	3L_14115316_SNP [dm3] 3L_14122216_SNP [dm6]	C	T	3.014e^-4	0.946	INTRON Sox21b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9983178	3R_9983178_SNP [dm3] 3R_14157456_SNP [dm6]	C	T	3.016e^-4	0.946	UPSTREAM CG31533 DOWNSTREAM CG31327 INTERGENIC
2L	7103078	2L_7103078_INS [dm3] 2L_7103078_INS [dm6]	G	GGTACAGAG	3.016e^-4	0.946	INTRON Pvf3
2L	1087298	2L_1087298_SNP [dm3] 2L_1087298_SNP [dm6]	G	C	3.019e^-4	0.946	INTRON CG4629
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	3.030e^-4	0.946	INTRON CG42747
3L	10616364	3L_10616364_SNP [dm3] 3L_10623264_SNP [dm6]	T	A	3.031e^-4	0.946	SYNONYMOUS_CODING CG42521
3L	8703217	3L_8703217_SNP [dm3] 3L_8710117_SNP [dm6]	C	T	3.051e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
3L	10747140	3L_10747140_SNP [dm3] 3L_10754040_SNP [dm6]	C	T	3.052e^-4	0.946	INTERGENIC
3L	13188742	3L_13188742_SNP [dm3] 3L_13195642_SNP [dm6]	C	T	3.057e^-4	0.946	INTERGENIC
4	569479	4_569479_SNP [dm3] 4_548853_SNP [dm6]	A	T	3.068e^-4	0.946	INTRON Thd1	transposable element FlyBase
X	9777750	X_9777750_SNP [dm3] X_9883717_SNP [dm6]	A	G	3.070e^-4	0.946	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
3R	13892300	3R_13892300_DEL [dm3] 3R_18066578_DEL [dm6]	CA	C	3.077e^-4	0.946	INTERGENIC
2L	5748004	2L_5748004_SNP [dm3] 2L_5748004_SNP [dm6]	T	C	3.084e^-4	0.946	DOWNSTREAM CG11029 INTRON CG11030
3L	1276765	3L_1276765_SNP [dm3] 3L_1276765_SNP [dm6]	G	A	3.098e^-4	0.946	INTRON CG32333
2R	11434754	2R_11434754_SNP [dm3] 2R_15547249_SNP [dm6]	G	A	3.102e^-4	0.946	INTRON CG8192	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9941853	2R_9941853_SNP [dm3] 2R_14054348_SNP [dm6]	G	A	3.103e^-4	0.946	INTRON mam
2L	4656566	2L_4656566_SNP [dm3] 2L_4656566_SNP [dm6]	G	T	3.116e^-4	0.946	INTERGENIC
2R	18649383	2R_18649383_SNP [dm3] 2R_22761878_SNP [dm6]	G	C	3.128e^-4	0.946	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3329303	X_3329303_SNP [dm3] X_3435270_SNP [dm6]	T	A	3.133e^-4	0.946	NON_SYNONYMOUS_CODING CG14269 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_sens
2L	3177917	2L_3177917_SNP [dm3] 2L_3177917_SNP [dm6]	A	G	3.139e^-4	0.946	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5846450	2L_5846450_SNP [dm3] 2L_5846450_SNP [dm6]	C	G	3.139e^-4	0.946	INTRON TrissinR
2L	7103758	2L_7103758_SNP [dm3] 2L_7103758_SNP [dm6]	C	T	3.146e^-4	0.946	INTRON Pvf3
3L	2946917	3L_2946917_SNP [dm3] 3L_2946917_SNP [dm6]	T	C	3.148e^-4	0.946	DOWNSTREAM Shab INTRON Shab
3R	9239791	3R_9239791_SNP [dm3] 3R_13414069_SNP [dm6]	T	A	3.155e^-4	0.946	INTRON yellow-e
3L	4410112	3L_4410112_SNP [dm3] 3L_4410112_SNP [dm6]	C	A	3.158e^-4	0.946	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	21156074	X_21156074_SNP [dm3] X_21285047_SNP [dm6]	G	A	3.159e^-4	0.946	UPSTREAM CG1494 INTERGENIC
X	16022212	X_16022212_SNP [dm3] X_16128179_SNP [dm6]	T	G	3.159e^-4	0.946	INTRON disco-r
2R	17866839	2R_17866839_SNP [dm3] 2R_21979334_SNP [dm6]	T	C	3.160e^-4	0.946	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3759385	3R_3759385_SNP [dm3] 3R_7933663_SNP [dm6]	G	A	3.161e^-4	0.946	UTR_3_PRIME dsx DOWNSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5824316	2R_5824316_SNP [dm3] 2R_9936811_SNP [dm6]	A	G	3.163e^-4	0.946	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14701966	3R_14701966_SNP [dm3] 3R_18876244_SNP [dm6]	T	A	3.171e^-4	0.946	INTRON CG14298
X	13663086	X_13663086_SNP [dm3] X_13769053_SNP [dm6]	T	G	3.172e^-4	0.946	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1839064	2L_1839064_DEL [dm3] 2L_1839064_DEL [dm6]	TT	T	3.176e^-4	0.946	DOWNSTREAM CR44073 INTRON wry
2L	5889400	2L_5889400_SNP [dm3] 2L_5889400_SNP [dm6]	C	T	3.178e^-4	0.946	DOWNSTREAM CR44578 INTERGENIC
X	6445800	X_6445800_SNP [dm3] X_6551767_SNP [dm6]	G	T	3.181e^-4	0.946	INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4758898	X_4758898_SNP [dm3] X_4864865_SNP [dm6]	C	T	3.188e^-4	0.946	INTRON CG42594
3L	6372312	3L_6372312_SNP [dm3] 3L_6379212_SNP [dm6]	A	C	3.193e^-4	0.946	INTERGENIC
2L	5974609	2L_5974609_SNP [dm3] 2L_5974609_SNP [dm6]	T	C	3.203e^-4	0.946	INTRON chic
3L	3317510	3L_3317510_INS [dm3] 3L_3317510_INS [dm6]	A	AGGAATTATCAGCCA...	3.212e^-4	0.946	DOWNSTREAM PIG-C & 1 other INTERGENIC
3L	2510264	3L_2510264_SNP [dm3] 3L_2510264_SNP [dm6]	T	C	3.213e^-4	0.946	NON_SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26438660	3R_26438660_SNP [dm3] 3R_30612938_SNP [dm6]	G	A	3.214e^-4	0.946	UPSTREAM CR45571 EXON CR45571
4	321140	4_321140_INS [dm3] 4_300514_INS [dm6]	T	TT	3.217e^-4	0.946	INTRON Syt7
3R	18585438	3R_18585438_SNP [dm3] 3R_22759716_SNP [dm6]	C	T	3.222e^-4	0.946	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20814682	X_20814682_SNP [dm3] X_20943655_SNP [dm6]	T	C	3.224e^-4	0.946	INTERGENIC
2L	17138228	2L_17138228_SNP [dm3] 2L_17138228_SNP [dm6]	A	T	3.237e^-4	0.946	INTRON beat-IIIa & 1 other
3L	18953224	3L_18953224_SNP [dm3] 3L_18960124_SNP [dm6]	A	G	3.239e^-4	0.946	INTERGENIC
2R	14437753	2R_14437753_SNP [dm3] 2R_18550248_SNP [dm6]	C	A	3.245e^-4	0.946	INTERGENIC
2L	3226134	2L_3226134_SNP [dm3] 2L_3226134_SNP [dm6]	C	T	3.249e^-4	0.946	INTERGENIC
2L	12874072	2L_12874072_SNP [dm3] 2L_12874072_SNP [dm6]	A	C	3.252e^-4	0.946	INTERGENIC
2L	14286087	2L_14286087_SNP [dm3] 2L_14286087_SNP [dm6]	T	C	3.255e^-4	0.946	SYNONYMOUS_CODING wb
3R	21268126	3R_21268126_SNP [dm3] 3R_25442404_SNP [dm6]	G	A	3.267e^-4	0.946	INTRON Fur1	TF binding site mE1_TFBS_Kr
2R	11434762	2R_11434762_DEL [dm3] 2R_15547257_DEL [dm6]	TT	T	3.279e^-4	0.946	INTRON CG8192	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17244979	3L_17244979_SNP [dm3] 3L_17251879_SNP [dm6]	T	C	3.287e^-4	0.946	DOWNSTREAM CG6497 INTRON CR43870
X	13701186	X_13701186_SNP [dm3] X_13807153_SNP [dm6]	T	C	3.293e^-4	0.946	UTR_3_PRIME inaE INTRON inaE
3R	16430242	3R_16430242_SNP [dm3] 3R_20604520_SNP [dm6]	G	T	3.293e^-4	0.946	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	14439987	2R_14439987_SNP [dm3] 2R_18552482_SNP [dm6]	C	T	3.295e^-4	0.946	INTERGENIC
3L	18111197	3L_18111197_SNP [dm3] 3L_18118097_SNP [dm6]	A	C	3.298e^-4	0.946	UTR_3_PRIME CG32195 INTRON CG7341
2L	5748493	2L_5748493_SNP [dm3] 2L_5748493_SNP [dm6]	G	A	3.299e^-4	0.946	DOWNSTREAM CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2R	9127144	2R_9127144_SNP [dm3] 2R_13239639_SNP [dm6]	T	A	3.327e^-4	0.946	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	973502	3L_973502_SNP [dm3] 3L_973502_SNP [dm6]	C	A	3.327e^-4	0.946	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2379605	3L_2379605_DEL [dm3] 3L_2379605_DEL [dm6]	ATTTCCTTATTTGTTTATAA...	A	3.335e^-4	0.946	INTRON CG45186
2L	10825603	2L_10825603_DEL [dm3] 2L_10825603_DEL [dm6]	TCGCACTT	T	3.335e^-4	0.946	INTRON Nos
2R	6282512	2R_6282512_SNP [dm3] 2R_10395007_SNP [dm6]	G	A	3.342e^-4	0.946	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3L	9693596	3L_9693596_SNP [dm3] 3L_9700496_SNP [dm6]	T	A	3.348e^-4	0.946	DOWNSTREAM CG6761 & 1 other INTERGENIC
3L	6000750	3L_6000750_SNP [dm3] 3L_6007650_SNP [dm6]	A	C	3.348e^-4	0.946	INTRON PVRAP
2R	9203502	2R_9203502_SNP [dm3] 2R_13315997_SNP [dm6]	T	C	3.357e^-4	0.946	INTERGENIC
2L	806800	2L_806800_INS [dm3] 2L_806800_INS [dm6]	C	CACATCC	3.358e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3980372	2R_3980372_SNP [dm3] 2R_8092867_SNP [dm6]	T	A	3.367e^-4	0.946	INTRON CG8713
2L	8566678	2L_8566678_SNP [dm3] 2L_8566678_SNP [dm6]	T	C	3.367e^-4	0.946	INTRON Sema-1a
3L	4529005	3L_4529005_SNP [dm3] 3L_4529005_SNP [dm6]	C	T	3.380e^-4	0.946	INTRON Tie
2L	18627348	2L_18627348_SNP [dm3] 2L_18627348_SNP [dm6]	G	C	3.384e^-4	0.946	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4395379	3R_4395379_SNP [dm3] 3R_8569657_SNP [dm6]	T	A	3.401e^-4	0.946	DOWNSTREAM Cenp-C INTERGENIC
2L	3818908	2L_3818908_SNP [dm3] 2L_3818908_SNP [dm6]	A	G	3.405e^-4	0.946	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9057800	2R_9057800_SNP [dm3] 2R_13170295_SNP [dm6]	C	A	3.406e^-4	0.946	INTRON CR45142 & 1 other
X	16523876	X_16523876_SNP [dm3] X_16629843_SNP [dm6]	G	T	3.422e^-4	0.946	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10613674	X_10613674_SNP [dm3] X_10719641_SNP [dm6]	G	A	3.424e^-4	0.946	INTRON CG32676
2L	11754400	2L_11754400_SNP [dm3] 2L_11754400_SNP [dm6]	C	A	3.427e^-4	0.946	UPSTREAM CG42470 & 1 other INTRON Sfp33A1
2L	3445614	2L_3445614_SNP [dm3] 2L_3445614_SNP [dm6]	A	T	3.428e^-4	0.946	UPSTREAM CG2772 INTERGENIC
3L	16309826	3L_16309826_SNP [dm3] 3L_16316726_SNP [dm6]	A	G	3.431e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20054379	2L_20054379_SNP [dm3] 2L_20054379_SNP [dm6]	A	G	3.432e^-4	0.946	SYNONYMOUS_CODING sNPF
2L	3993438	2L_3993438_SNP [dm3] 2L_3993438_SNP [dm6]	G	A	3.436e^-4	0.946	INTERGENIC
2L	8034959	2L_8034959_SNP [dm3] 2L_8034959_SNP [dm6]	T	C	3.441e^-4	0.946	INTRON CG7367 & 1 other
2R	11428316	2R_11428316_SNP [dm3] 2R_15540811_SNP [dm6]	G	T	3.447e^-4	0.946	SYNONYMOUS_CODING CG8187 UPSTREAM Vha36-1 DOWNSTREAM CG30467	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	3919325	2L_3919325_SNP [dm3] 2L_3919325_SNP [dm6]	A	T	3.449e^-4	0.946	SYNONYMOUS_CODING fred
X	16163297	X_16163297_SNP [dm3] X_16269264_SNP [dm6]	C	T	3.452e^-4	0.946	SYNONYMOUS_CODING kat80
2L	5974598	2L_5974598_SNP [dm3] 2L_5974598_SNP [dm6]	T	C	3.452e^-4	0.946	INTRON chic
2L	5732820	2L_5732820_SNP [dm3] 2L_5732820_SNP [dm6]	C	T	3.453e^-4	0.946	DOWNSTREAM CG11147 INTRON CG11030
2L	9175855	2L_9175855_SNP [dm3] 2L_9175855_SNP [dm6]	G	A	3.464e^-4	0.946	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7012115	2L_7012115_SNP [dm3] 2L_7012115_SNP [dm6]	T	C	3.464e^-4	0.946	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12028033	2R_12028033_SNP [dm3] 2R_16140528_SNP [dm6]	T	A	3.465e^-4	0.946	SYNONYMOUS_CODING Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	12860246	3R_12860246_SNP [dm3] 3R_17034524_SNP [dm6]	T	A	3.469e^-4	0.946	NON_SYNONYMOUS_CODING CG4009	TF binding site mE1_TFBS_HSA
3R	26061671	3R_26061671_SNP [dm3] 3R_30235949_SNP [dm6]	G	A	3.469e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11424982	2R_11424982_SNP [dm3] 2R_15537477_SNP [dm6]	C	A	3.479e^-4	0.946	UPSTREAM CG30467 INTRON CG30471
X	20003902	X_20003902_SNP [dm3] X_20109869_SNP [dm6]	G	A	3.486e^-4	0.946	DOWNSTREAM karr INTERGENIC
2L	19049919	2L_19049919_SNP [dm3] 2L_19049919_SNP [dm6]	A	G	3.487e^-4	0.946	SYNONYMOUS_CODING l_2_37Bb DOWNSTREAM CG10470	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1947380	2L_1947380_SNP [dm3] 2L_1947380_SNP [dm6]	C	G	3.496e^-4	0.946	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10800476	3L_10800476_SNP [dm3] 3L_10807376_SNP [dm6]	C	T	3.499e^-4	0.946	INTERGENIC
3L	10873540	3L_10873540_SNP [dm3] 3L_10880440_SNP [dm6]	A	G	3.506e^-4	0.946	DOWNSTREAM CG6409 & 1 other INTERGENIC
3R	25445395	3R_25445395_SNP [dm3] 3R_29619673_SNP [dm6]	C	T	3.517e^-4	0.946	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11350546	3L_11350546_SNP [dm3] 3L_11357446_SNP [dm6]	G	A	3.522e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9519108	2L_9519108_SNP [dm3] 2L_9519108_SNP [dm6]	C	A	3.523e^-4	0.946	INTRON CG33298
X	7995198	X_7995198_SNP [dm3] X_8101165_SNP [dm6]	G	T	3.524e^-4	0.946	UTR_5_PRIME CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5890117	2L_5890117_INS [dm3] 2L_5890117_INS [dm6]	A	AA	3.538e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11428331	2R_11428331_SNP [dm3] 2R_15540826_SNP [dm6]	T	C	3.539e^-4	0.946	SYNONYMOUS_CODING CG8187 UPSTREAM Vha36-1 DOWNSTREAM CG30467	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	3938250	3L_3938250_SNP [dm3] 3L_3938250_SNP [dm6]	A	C	3.541e^-4	0.946	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
2R	12861667	2R_12861667_SNP [dm3] 2R_16974162_SNP [dm6]	A	G	3.563e^-4	0.946	INTRON Cbp53E
X	7993507	X_7993507_SNP [dm3] X_8099474_SNP [dm6]	G	A	3.567e^-4	0.946	SYNONYMOUS_CODING CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
X	8088120	X_8088120_INS [dm3] X_8194087_INS [dm6]	T	TTTT	3.573e^-4	0.946	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18935907	3L_18935907_SNP [dm3] 3L_18942807_SNP [dm6]	T	G	3.574e^-4	0.946	INTRON CG32204
3R	15503063	3R_15503063_SNP [dm3] 3R_19677341_SNP [dm6]	C	T	3.580e^-4	0.946	INTRON Naam
X	4772398	X_4772398_SNP [dm3] X_4878365_SNP [dm6]	T	A	3.581e^-4	0.946	INTRON CG42594
2R	7197751	2R_7197751_DEL [dm3] 2R_11310246_DEL [dm6]	AA	A	3.582e^-4	0.946	UPSTREAM CG43114 DOWNSTREAM nompA & 1 other INTERGENIC
2L	9503650	2L_9503650_SNP [dm3] 2L_9503650_SNP [dm6]	A	G	3.591e^-4	0.946	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3978243	2R_3978243_SNP [dm3] 2R_8090738_SNP [dm6]	T	C	3.591e^-4	0.946	UPSTREAM CG8713 INTRON sut3	TF binding site mE1_TFBS_sens
3R	16991750	3R_16991750_DEL [dm3] 3R_21166028_DEL [dm6]	AA	A	3.596e^-4	0.946	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3L	10647975	3L_10647975_DEL [dm3] 3L_10654875_DEL [dm6]	AAG	A	3.599e^-4	0.946	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3L	18946208	3L_18946208_SNP [dm3] 3L_18953108_SNP [dm6]	T	A	3.600e^-4	0.946	INTRON CG6836
X	20374978	X_20374978_SNP [dm3] X_20503951_SNP [dm6]	C	G	3.609e^-4	0.946	INTRON RhoGAP19D
3L	1690538	3L_1690538_SNP [dm3] 3L_1690538_SNP [dm6]	C	T	3.631e^-4	0.946	INTRON CG7991
2R	14663360	2R_14663360_SNP [dm3] 2R_18775855_SNP [dm6]	C	T	3.634e^-4	0.946	NON_SYNONYMOUS_CODING CG15093 INTRON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18107860	3L_18107860_SNP [dm3] 3L_18114760_SNP [dm6]	T	A	3.634e^-4	0.946	SPLICE_SITE_REGION CG32195 INTRON CG7341 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_sens
X	9042223	X_9042223_SNP [dm3] X_9148190_SNP [dm6]	A	G	3.635e^-4	0.946	UTR_3_PRIME fh DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3126401	2L_3126401_SNP [dm3] 2L_3126401_SNP [dm6]	T	C	3.636e^-4	0.946	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16309484	3L_16309484_SNP [dm3] 3L_16316384_SNP [dm6]	A	C	3.637e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16816342	3L_16816342_SNP [dm3] 3L_16823242_SNP [dm6]	G	A	3.641e^-4	0.946	INTRON CG13024	TF binding site mE1_TFBS_inv
2L	16149214	2L_16149214_SNP [dm3] 2L_16149214_SNP [dm6]	T	G	3.643e^-4	0.946	INTERGENIC
3R	4459139	3R_4459139_SNP [dm3] 3R_8633417_SNP [dm6]	C	G	3.645e^-4	0.946	DOWNSTREAM Or85e INTERGENIC
4	315041	4_315041_SNP [dm3] 4_294415_SNP [dm6]	G	A	3.646e^-4	0.946	INTRON Syt7
X	10251913	X_10251913_SNP [dm3] X_10357880_SNP [dm6]	T	G	3.649e^-4	0.946	INTRON l_1_G0289
2R	13896198	2R_13896198_SNP [dm3] 2R_18008693_SNP [dm6]	T	C	3.660e^-4	0.946	UPSTREAM dpr13 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	894430	2L_894430_SNP [dm3] 2L_894430_SNP [dm6]	T	G	3.661e^-4	0.946	INTERGENIC
2R	11432996	2R_11432996_SNP [dm3] 2R_15545491_SNP [dm6]	C	T	3.661e^-4	0.946	SYNONYMOUS_CODING CG8192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12852281	3L_12852281_SNP [dm3] 3L_12859181_SNP [dm6]	A	C	3.677e^-4	0.946	NON_SYNONYMOUS_CODING CG32107
X	21199457	X_21199457_SNP [dm3] X_21328430_SNP [dm6]	T	C	3.678e^-4	0.946	DOWNSTREAM tty & 1 other INTERGENIC
2R	3554806	2R_3554806_SNP [dm3] 2R_7667301_SNP [dm6]	C	T	3.680e^-4	0.946	UTR_3_PRIME CG2064 & 1 other	TF binding site mE1_TFBS_cad
4	281725	4_281725_SNP [dm3] 4_261099_SNP [dm6]	T	A	3.680e^-4	0.946	INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl
2L	3125922	2L_3125922_SNP [dm3] 2L_3125922_SNP [dm6]	A	G	3.687e^-4	0.946	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7033119	2R_7033119_SNP [dm3] 2R_11145614_SNP [dm6]	A	G	3.690e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18693597	X_18693597_SNP [dm3] X_18799564_SNP [dm6]	G	C	3.693e^-4	0.946	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15696298	2R_15696298_SNP [dm3] 2R_19808793_SNP [dm6]	A	G	3.697e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4762125	3L_4762125_SNP [dm3] 3L_4762125_SNP [dm6]	A	T	3.697e^-4	0.946	INTRON RhoGEF64C
X	2457403	X_2457403_SNP [dm3] X_2563370_SNP [dm6]	C	T	3.698e^-4	0.946	INTRON Pdfr
X	13213950	X_13213950_SNP [dm3] X_13319917_SNP [dm6]	C	T	3.700e^-4	0.946	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	6824863	3R_6824863_SNP [dm3] 3R_10999141_SNP [dm6]	T	C	3.702e^-4	0.946	INTRON CG34114
3L	9277170	3L_9277170_SNP [dm3] 3L_9284070_SNP [dm6]	C	T	3.702e^-4	0.946	SYNONYMOUS_CODING GluRIB
2R	7033106	2R_7033106_INS [dm3] 2R_11145601_INS [dm6]	G	CAA	3.705e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033108	2R_7033108_SNP [dm3] 2R_11145603_SNP [dm6]	T	A	3.705e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033115	2R_7033115_INS [dm3] 2R_11145610_INS [dm6]	C	CAATACTTAAGCTTGCATCG...	3.705e^-4	0.946	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11170109	3L_11170109_SNP [dm3] 3L_11177009_SNP [dm6]	G	C	3.706e^-4	0.946	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
2L	1544450	2L_1544450_SNP [dm3] 2L_1544450_SNP [dm6]	C	T	3.707e^-4	0.946	INTERGENIC
X	19269560	X_19269560_SNP [dm3] X_19375527_SNP [dm6]	A	C	3.714e^-4	0.946	INTRON kek5
2L	1327645	2L_1327645_SNP [dm3] 2L_1327645_SNP [dm6]	T	G	3.715e^-4	0.946	INTERGENIC
3R	5156140	3R_5156140_SNP [dm3] 3R_9330418_SNP [dm6]	C	A	3.716e^-4	0.946	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2L	1184146	2L_1184146_SNP [dm3] 2L_1184146_SNP [dm6]	T	A	3.723e^-4	0.946	UTR_5_PRIME Tgt UPSTREAM CG5126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15670046	3L_15670046_SNP [dm3] 3L_15676946_SNP [dm6]	T	G	3.728e^-4	0.946	INTERGENIC
2R	18007087	2R_18007087_SNP [dm3] 2R_22119582_SNP [dm6]	T	C	3.728e^-4	0.946	INTRON Vrp1
2L	20334378	2L_20334378_SNP [dm3] 2L_20334378_SNP [dm6]	C	T	3.736e^-4	0.946	INTRON spir
X	3143395	X_3143395_SNP [dm3] X_3249362_SNP [dm6]	A	G	3.739e^-4	0.946	UPSTREAM Sgs4 & 1 other INTRON dnc
2R	9353839	2R_9353839_SNP [dm3] 2R_13466334_SNP [dm6]	A	G	3.745e^-4	0.946	INTRON arr
2R	10331321	2R_10331321_SNP [dm3] 2R_14443816_SNP [dm6]	A	G	3.745e^-4	0.946	INTRON Oaz
2R	4967512	2R_4967512_INS [dm3] 2R_9080007_INS [dm6]	A	ATAT	3.750e^-4	0.946	INTRON CG8083
2R	14443503	2R_14443503_SNP [dm3] 2R_18555998_SNP [dm6]	G	A	3.754e^-4	0.946	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
2L	7103099	2L_7103099_SNP [dm3] 2L_7103099_SNP [dm6]	T	C	3.755e^-4	0.946	INTRON Pvf3
2L	7103117	2L_7103117_SNP [dm3] 2L_7103117_SNP [dm6]	T	A	3.758e^-4	0.946	INTRON Pvf3
2L	3244936	2L_3244936_SNP [dm3] 2L_3244936_SNP [dm6]	C	T	3.762e^-4	0.946	INTERGENIC
3R	26220071	3R_26220071_SNP [dm3] 3R_30394349_SNP [dm6]	G	A	3.764e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13058602	3R_13058602_SNP [dm3] 3R_17232880_SNP [dm6]	C	G	3.771e^-4	0.946	SYNONYMOUS_CODING beat-IIb
3R	12836822	3R_12836822_SNP [dm3] 3R_17011100_SNP [dm6]	T	G	3.771e^-4	0.946	INTRON CG8907
2R	3554176	2R_3554176_SNP [dm3] 2R_7666671_SNP [dm6]	T	C	3.777e^-4	0.946	DOWNSTREAM CG12042 INTRON CG2064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1614739	2L_1614739_SNP [dm3] 2L_1614739_SNP [dm6]	C	A	3.778e^-4	0.946	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1487206	2L_1487206_SNP [dm3] 2L_1487206_SNP [dm6]	C	T	3.778e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10800276	3L_10800276_SNP [dm3] 3L_10807176_SNP [dm6]	G	T	3.784e^-4	0.946	INTERGENIC
3R	13142761	3R_13142761_SNP [dm3] 3R_17317039_SNP [dm6]	G	C	3.794e^-4	0.946	INTERGENIC
2L	8034992	2L_8034992_SNP [dm3] 2L_8034992_SNP [dm6]	G	C	3.814e^-4	0.946	INTRON CG7367 & 1 other
2L	18291582	2L_18291582_DEL [dm3] 2L_18291582_DEL [dm6]	GCGCTGCAAGAATGAGAGCA...	G	3.819e^-4	0.946	UPSTREAM CR44693 & 3 others INTERGENIC
X	13964618	X_13964618_SNP [dm3] X_14070585_SNP [dm6]	C	A	3.821e^-4	0.946	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	10611754	3L_10611754_SNP [dm3] 3L_10618654_SNP [dm6]	T	A	3.821e^-4	0.946	INTERGENIC
3R	10427518	3R_10427518_SNP [dm3] 3R_14601796_SNP [dm6]	A	G	3.823e^-4	0.946	UPSTREAM stumps INTRON stumps
3L	11016125	3L_11016125_SNP [dm3] 3L_11023025_SNP [dm6]	A	T	3.828e^-4	0.946	UPSTREAM Fad2 INTERGENIC
2L	2931986	2L_2931986_INS [dm3] 2L_2931986_INS [dm6]	A	AA	3.834e^-4	0.946	INTRON lilli
3L	14035757	3L_14035757_SNP [dm3] 3L_14042657_SNP [dm6]	G	A	3.836e^-4	0.946	SYNONYMOUS_CODING Hsc70Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4924679	2L_4924679_SNP [dm3] 2L_4924679_SNP [dm6]	C	T	3.843e^-4	0.946	INTRON hoe1
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	3.859e^-4	0.946	INTERGENIC
3R	13926876	3R_13926876_SNP [dm3] 3R_18101154_SNP [dm6]	T	G	3.865e^-4	0.946	INTRON sr
3R	13578522	3R_13578522_SNP [dm3] 3R_17752800_SNP [dm6]	A	G	3.867e^-4	0.946	NON_SYNONYMOUS_CODING TyrR
3L	2673337	3L_2673337_SNP [dm3] 3L_2673337_SNP [dm6]	T	C	3.871e^-4	0.946	INTRON Fife
3R	17005144	3R_17005144_SNP [dm3] 3R_21179422_SNP [dm6]	C	T	3.874e^-4	0.946	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	892616	2L_892616_SNP [dm3] 2L_892616_SNP [dm6]	C	T	3.875e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3553231	2R_3553231_SNP [dm3] 2R_7665726_SNP [dm6]	G	A	3.882e^-4	0.946	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	792706	2R_792706_SNP [dm3] 2R_4905201_SNP [dm6]	C	T	3.885e^-4	0.946	INTRON CG44102	transposable element FlyBase
2L	4718167	2L_4718167_SNP [dm3] 2L_4718167_SNP [dm6]	A	G	3.886e^-4	0.946	INTRON CG34351
X	8644454	X_8644454_SNP [dm3] X_8750421_SNP [dm6]	A	C	3.886e^-4	0.946	INTERGENIC
X	3940800	X_3940800_SNP [dm3] X_4046767_SNP [dm6]	G	A	3.889e^-4	0.946	DOWNSTREAM CR45482 INTERGENIC
3R	9138520	3R_9138520_SNP [dm3] 3R_13312798_SNP [dm6]	C	T	3.903e^-4	0.946	DOWNSTREAM CG44142 & 1 other INTERGENIC
2R	16566918	2R_16566918_SNP [dm3] 2R_20679413_SNP [dm6]	C	T	3.905e^-4	0.946	INTERGENIC
2L	7174960	2L_7174960_SNP [dm3] 2L_7174960_SNP [dm6]	G	T	3.924e^-4	0.946	UPSTREAM CR44610 INTERGENIC
3L	3944906	3L_3944906_SNP [dm3] 3L_3944906_SNP [dm6]	G	C	3.928e^-4	0.946	NON_SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	3287165	2L_3287165_SNP [dm3] 2L_3287165_SNP [dm6]	A	C	3.929e^-4	0.946	UPSTREAM CR44485 INTERGENIC
X	8088015	X_8088015_SNP [dm3] X_8193982_SNP [dm6]	T	C	3.933e^-4	0.946	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19526466	2R_19526466_INS [dm3] 2R_23638943_INS [dm6]	T	TCTTT	3.936e^-4	0.946	INTRON retn EXON CR45153	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19081565	2L_19081565_SNP [dm3] 2L_19081565_SNP [dm6]	G	A	3.939e^-4	0.946	SYNONYMOUS_CODING Lim3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3936530	3L_3936530_SNP [dm3] 3L_3936530_SNP [dm6]	A	G	3.942e^-4	0.946	UTR_3_PRIME CG10866 UPSTREAM Eip63F-1 DOWNSTREAM CG10866 & 1 other
3L	13589474	3L_13589474_SNP [dm3] 3L_13596374_SNP [dm6]	A	G	3.943e^-4	0.946	INTRON bru-3
2R	14436385	2R_14436385_SNP [dm3] 2R_18548880_SNP [dm6]	C	T	3.962e^-4	0.946	UTR_3_PRIME Rgk2	TF binding site mE1_TFBS_cad
3L	3874228	3L_3874228_SNP [dm3] 3L_3874228_SNP [dm6]	G	A	3.967e^-4	0.946	INTERGENIC
2R	19252234	2R_19252234_SNP [dm3] 2R_23364711_SNP [dm6]	T	G	3.972e^-4	0.946	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13926877	3R_13926877_SNP [dm3] 3R_18101155_SNP [dm6]	A	G	3.980e^-4	0.946	INTRON sr
2L	12412978	2L_12412978_SNP [dm3] 2L_12412978_SNP [dm6]	T	A	3.982e^-4	0.946	INTRON vir-1
3L	993817	3L_993817_SNP [dm3] 3L_993817_SNP [dm6]	A	C	3.982e^-4	0.946	UPSTREAM CG12038 DOWNSTREAM Glut1 INTERGENIC
3L	2422453	3L_2422453_SNP [dm3] 3L_2422453_SNP [dm6]	A	G	3.987e^-4	0.946	INTRON CG45186
3R	12841366	3R_12841366_SNP [dm3] 3R_17015644_SNP [dm6]	T	C	3.989e^-4	0.946	UPSTREAM Pxd INTRON Pxd
2L	6839832	2L_6839832_SNP [dm3] 2L_6839832_SNP [dm6]	A	C	3.989e^-4	0.946	DOWNSTREAM sens-2 INTERGENIC
2L	1920795	2L_1920795_SNP [dm3] 2L_1920795_SNP [dm6]	C	T	3.992e^-4	0.946	INTRON CG7337
2R	8370760	2R_8370760_SNP [dm3] 2R_12483255_SNP [dm6]	A	C	3.994e^-4	0.946	INTRON Dh44-R2
3L	11350537	3L_11350537_SNP [dm3] 3L_11357437_SNP [dm6]	T	A	3.998e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2074381	3L_2074381_SNP [dm3] 3L_2074381_SNP [dm6]	C	T	3.999e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls
2R	6676497	2R_6676497_SNP [dm3] 2R_10788992_SNP [dm6]	A	G	4.003e^-4	0.946	INTRON CG33144
3L	13939175	3L_13939175_SNP [dm3] 3L_13946075_SNP [dm6]	A	T	4.007e^-4	0.946	INTRON CG32137
3R	20713868	3R_20713868_SNP [dm3] 3R_24888146_SNP [dm6]	T	G	4.008e^-4	0.946	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9777748	X_9777748_SNP [dm3] X_9883715_SNP [dm6]	G	A	4.008e^-4	0.946	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
2L	9496975	2L_9496975_SNP [dm3] 2L_9496975_SNP [dm6]	T	C	4.012e^-4	0.946	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	768150	2R_768150_SNP [dm3] 2R_4880645_SNP [dm6]	G	T	4.016e^-4	0.946	INTERGENIC	transposable element FlyBase
X	10257515	X_10257515_SNP [dm3] X_10363482_SNP [dm6]	A	C	4.016e^-4	0.946	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
3L	22582940	3L_22582940_SNP [dm3] 3L_22589840_SNP [dm6]	T	A	4.024e^-4	0.946	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7526222	2R_7526222_SNP [dm3] 2R_11638717_SNP [dm6]	C	A	4.037e^-4	0.946	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20555319	X_20555319_SNP [dm3] X_20684292_SNP [dm6]	T	C	4.037e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	12125060	3L_12125060_SNP [dm3] 3L_12131960_SNP [dm6]	G	T	4.039e^-4	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12067855	3L_12067855_SNP [dm3] 3L_12074755_SNP [dm6]	A	C	4.042e^-4	0.946	INTRON Sema-5c
2R	4967509	2R_4967509_SNP [dm3] 2R_9080004_SNP [dm6]	A	T	4.049e^-4	0.946	INTRON CG8083
3L	24260637	3L_24260637_DEL [dm3] 3L_24267537_DEL [dm6]	ACAATTACGGCAATAACAG...	A	4.053e^-4	0.946	INTRON Snap25
3R	16580300	3R_16580300_SNP [dm3] 3R_20754578_SNP [dm6]	C	T	4.056e^-4	0.946	DOWNSTREAM CG42322 INTRON CG42322
3L	15694396	3L_15694396_SNP [dm3] 3L_15701296_SNP [dm6]	G	A	4.064e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens mE1_TFBS_Trl
2L	7469168	2L_7469168_SNP [dm3] 2L_7469168_SNP [dm6]	A	G	4.070e^-4	0.946	INTRON CG6055
2R	9204716	2R_9204716_SNP [dm3] 2R_13317211_SNP [dm6]	G	C	4.079e^-4	0.946	INTERGENIC
2L	1377954	2L_1377954_SNP [dm3] 2L_1377954_SNP [dm6]	G	A	4.079e^-4	0.946	INTERGENIC
2R	7888199	2R_7888199_DEL [dm3] 2R_12000694_DEL [dm6]	GAGCCTTTG	G	4.085e^-4	0.946	DOWNSTREAM otk INTERGENIC
2R	8662124	2R_8662124_SNP [dm3] 2R_12774619_SNP [dm6]	C	A	4.090e^-4	0.946	INTERGENIC
3L	18935916	3L_18935916_DEL [dm3] 3L_18942816_DEL [dm6]	TAAATATTTA	T	4.093e^-4	0.946	INTRON CG32204
3R	13973085	3R_13973085_SNP [dm3] 3R_18147363_SNP [dm6]	T	A	4.095e^-4	0.946	INTERGENIC
3L	16398571	3L_16398571_SNP [dm3] 3L_16405471_SNP [dm6]	C	T	4.097e^-4	0.946	INTRON fax	TF binding site mE1_TFBS_sens
2L	1375857	2L_1375857_SNP [dm3] 2L_1375857_SNP [dm6]	A	G	4.097e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1377883	2L_1377883_INS [dm3] 2L_1377883_INS [dm6]	G	CAA	4.097e^-4	0.946	INTERGENIC
2L	6814276	2L_6814276_SNP [dm3] 2L_6814276_SNP [dm6]	C	T	4.108e^-4	0.946	INTERGENIC
2L	7192761	2L_7192761_SNP [dm3] 2L_7192761_SNP [dm6]	G	T	4.117e^-4	0.946	SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3157132	2L_3157132_SNP [dm3] 2L_3157132_SNP [dm6]	C	T	4.121e^-4	0.946	INTRON Mad
2L	1544479	2L_1544479_INS [dm3] 2L_1544479_INS [dm6]	AC	CAGTA	4.127e^-4	0.946	INTERGENIC
X	12404466	X_12404466_SNP [dm3] X_12510433_SNP [dm6]	C	G	4.133e^-4	0.946	INTRON CG2556
3R	15277865	3R_15277865_DEL [dm3] 3R_19452143_DEL [dm6]	TT	T	4.136e^-4	0.946	INTRON CG31221
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	4.142e^-4	0.946	DOWNSTREAM CG42322 INTRON CG42322
2L	3055516	2L_3055516_SNP [dm3] 2L_3055516_SNP [dm6]	C	A	4.147e^-4	0.946	UTR_3_PRIME v_2_k05816	TF binding site BDTNP1_TFBS_dl
3L	17187288	3L_17187288_DEL [dm3] 3L_17194188_DEL [dm6]	CC	C	4.157e^-4	0.946	INTRON Rbp6
3L	21032521	3L_21032521_SNP [dm3] 3L_21039421_SNP [dm6]	G	T	4.162e^-4	0.946	INTRON siz
3R	25503463	3R_25503463_SNP [dm3] 3R_29677741_SNP [dm6]	A	T	4.169e^-4	0.946	INTRON Cap-D2	TF binding site mE1_TFBS_cad
3R	18585480	3R_18585480_SNP [dm3] 3R_22759758_SNP [dm6]	A	T	4.171e^-4	0.946	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7902690	2L_7902690_SNP [dm3] 2L_7902690_SNP [dm6]	C	T	4.172e^-4	0.946	INTRON Snoo
2L	11318483	2L_11318483_SNP [dm3] 2L_11318483_SNP [dm6]	G	A	4.177e^-4	0.946	UPSTREAM CR44583 INTERGENIC
2R	7287272	2R_7287272_SNP [dm3] 2R_11399767_SNP [dm6]	G	A	4.181e^-4	0.946	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5426796	3L_5426796_SNP [dm3] 3L_5433696_SNP [dm6]	C	T	4.202e^-4	0.946	INTRON CG34391
3L	10614806	3L_10614806_SNP [dm3] 3L_10621706_SNP [dm6]	A	T	4.203e^-4	0.946	INTERGENIC
3R	10825491	3R_10825491_SNP [dm3] 3R_14999769_SNP [dm6]	A	G	4.214e^-4	0.946	INTERGENIC
2L	6771736	2L_6771736_SNP [dm3] 2L_6771736_SNP [dm6]	A	C	4.215e^-4	0.946	UPSTREAM CG11321 INTRON CG11321
2R	17062031	2R_17062031_SNP [dm3] 2R_21174526_SNP [dm6]	C	T	4.220e^-4	0.946	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC
2L	7042260	2L_7042260_SNP [dm3] 2L_7042260_SNP [dm6]	C	T	4.222e^-4	0.946	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10779342	3L_10779342_SNP [dm3] 3L_10786242_SNP [dm6]	G	A	4.236e^-4	0.946	DOWNSTREAM CR44544 INTERGENIC
X	15401173	X_15401173_SNP [dm3] X_15507140_SNP [dm6]	A	C	4.238e^-4	0.946	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	4.243e^-4	0.946	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2L	8034938	2L_8034938_SNP [dm3] 2L_8034938_SNP [dm6]	G	A	4.247e^-4	0.946	INTRON CG7367 & 1 other
2L	5494814	2L_5494814_SNP [dm3] 2L_5494814_SNP [dm6]	G	T	4.251e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13795161	X_13795161_SNP [dm3] X_13901128_SNP [dm6]	A	C	4.256e^-4	0.946	INTRON mamo
X	18973196	X_18973196_SNP [dm3] X_19079163_SNP [dm6]	C	T	4.256e^-4	0.946	DOWNSTREAM CG7406 INTERGENIC
3L	2711153	3L_2711153_SNP [dm3] 3L_2711153_SNP [dm6]	G	A	4.261e^-4	0.946	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4651773	X_4651773_SNP [dm3] X_4757740_SNP [dm6]	T	C	4.262e^-4	0.946	INTERGENIC
2L	5965505	2L_5965505_SNP [dm3] 2L_5965505_SNP [dm6]	A	C	4.301e^-4	0.946	UTR_3_PRIME CG13992 UPSTREAM psd
3L	18935913	3L_18935913_SNP [dm3] 3L_18942813_SNP [dm6]	A	G	4.304e^-4	0.946	INTRON CG32204
3L	10799453	3L_10799453_SNP [dm3] 3L_10806353_SNP [dm6]	G	T	4.305e^-4	0.946	UPSTREAM CR44347 INTERGENIC
3L	993814	3L_993814_SNP [dm3] 3L_993814_SNP [dm6]	G	T	4.307e^-4	0.946	UPSTREAM CG12038 DOWNSTREAM Glut1 INTERGENIC
X	9930094	X_9930094_SNP [dm3] X_10036061_SNP [dm6]	A	G	4.307e^-4	0.946	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6451792	3R_6451792_SNP [dm3] 3R_10626070_SNP [dm6]	G	T	4.311e^-4	0.946	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1868566	2R_1868566_INS [dm3] 2R_5981061_INS [dm6]	C	CGCACCTTCC	4.316e^-4	0.946	UPSTREAM mle & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12404467	X_12404467_SNP [dm3] X_12510434_SNP [dm6]	T	C	4.317e^-4	0.946	INTRON CG2556
2L	6810970	2L_6810970_SNP [dm3] 2L_6810970_SNP [dm6]	T	A	4.317e^-4	0.946	INTERGENIC
3L	1068278	3L_1068278_SNP [dm3] 3L_1068278_SNP [dm6]	C	T	4.320e^-4	0.946	INTRON bab1
2L	1544464	2L_1544464_INS [dm3] 2L_1544464_INS [dm6]	T	TT	4.335e^-4	0.946	INTERGENIC
X	16161944	X_16161944_SNP [dm3] X_16267911_SNP [dm6]	T	A	4.341e^-4	0.946	SPLICE_SITE_REGION kat80 INTRON kat80
X	16162075	X_16162075_SNP [dm3] X_16268042_SNP [dm6]	T	C	4.341e^-4	0.946	INTRON kat80
2R	10585829	2R_10585829_SNP [dm3] 2R_14698324_SNP [dm6]	T	C	4.341e^-4	0.946	INTRON mspo
X	9378856	X_9378856_SNP [dm3] X_9484823_SNP [dm6]	G	A	4.349e^-4	0.946	INTRON mgl
2L	4928832	2L_4928832_SNP [dm3] 2L_4928832_SNP [dm6]	C	T	4.352e^-4	0.946	UPSTREAM hoe1 INTRON hoe1
3R	24022893	3R_24022893_SNP [dm3] 3R_28197171_SNP [dm6]	C	T	4.366e^-4	0.946	INTRON CG34354
X	16172751	X_16172751_SNP [dm3] X_16278718_SNP [dm6]	A	T	4.373e^-4	0.946	UTR_5_PRIME eas INTRON eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25445396	3R_25445396_SNP [dm3] 3R_29619674_SNP [dm6]	C	T	4.394e^-4	0.946	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9015023	2R_9015023_SNP [dm3] 2R_13127518_SNP [dm6]	G	C	4.398e^-4	0.946	DOWNSTREAM CG3955 INTERGENIC
2L	7594768	2L_7594768_SNP [dm3] 2L_7594768_SNP [dm6]	T	C	4.410e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16309470	3L_16309470_SNP [dm3] 3L_16316370_SNP [dm6]	T	C	4.411e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6913203	2R_6913203_SNP [dm3] 2R_11025698_SNP [dm6]	A	G	4.414e^-4	0.946	INTRON luna
2L	18297473	2L_18297473_SNP [dm3] 2L_18297473_SNP [dm6]	A	T	4.417e^-4	0.946	DOWNSTREAM CG5790 INTERGENIC
2R	793017	2R_793017_SNP [dm3] 2R_4905512_SNP [dm6]	G	C	4.427e^-4	0.946	INTRON CG44102
X	6778905	X_6778905_SNP [dm3] X_6884872_SNP [dm6]	T	A	4.429e^-4	0.946	INTERGENIC
2L	7193782	2L_7193782_SNP [dm3] 2L_7193782_SNP [dm6]	T	G	4.429e^-4	0.946	INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15369316	3R_15369316_SNP [dm3] 3R_19543594_SNP [dm6]	A	T	4.432e^-4	0.946	INTRON Dys
2L	1544453	2L_1544453_INS [dm3] 2L_1544453_INS [dm6]	T	GTG	4.450e^-4	0.946	INTERGENIC
3R	12360170	3R_12360170_SNP [dm3] 3R_16534448_SNP [dm6]	G	A	4.451e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12024979	X_12024979_SNP [dm3] X_12130946_SNP [dm6]	T	G	4.456e^-4	0.946	INTRON Ten-a
X	9930463	X_9930463_SNP [dm3] X_10036430_SNP [dm6]	A	T	4.467e^-4	0.946	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	2027964	2R_2027964_SNP [dm3] 2R_6140459_SNP [dm6]	G	C	4.470e^-4	0.946	INTRON EcR
2L	1789736	2L_1789736_SNP [dm3] 2L_1789736_SNP [dm6]	G	A	4.477e^-4	0.946	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3831211	2L_3831211_SNP [dm3] 2L_3831211_SNP [dm6]	T	A	4.480e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17574178	2R_17574178_SNP [dm3] 2R_21686673_SNP [dm6]	G	A	4.504e^-4	0.946	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7000886	2L_7000886_SNP [dm3] 2L_7000886_SNP [dm6]	T	A	4.509e^-4	0.946	INTRON uif
3L	10920911	3L_10920911_SNP [dm3] 3L_10927811_SNP [dm6]	A	G	4.510e^-4	0.946	INTERGENIC
2L	1544472	2L_1544472_SNP [dm3] 2L_1544472_SNP [dm6]	A	C	4.511e^-4	0.946	INTERGENIC
3L	9693595	3L_9693595_SNP [dm3] 3L_9700495_SNP [dm6]	G	T	4.515e^-4	0.946	DOWNSTREAM CG6761 & 1 other INTERGENIC
2R	14785308	2R_14785308_DEL [dm3] 2R_18897803_DEL [dm6]	ATAAAGGAAAC...	A	4.522e^-4	0.946	INTRON sano
2R	9056710	2R_9056710_SNP [dm3] 2R_13169205_SNP [dm6]	T	A	4.532e^-4	0.946	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21203926	X_21203926_SNP [dm3] X_21332899_SNP [dm6]	G	C	4.536e^-4	0.946	DOWNSTREAM tty INTRON tty
2L	11747596	2L_11747596_SNP [dm3] 2L_11747596_SNP [dm6]	A	T	4.537e^-4	0.946	INTERGENIC
3R	22948283	3R_22948283_SNP [dm3] 3R_27122561_SNP [dm6]	G	A	4.539e^-4	0.946	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20555326	X_20555326_SNP [dm3] X_20684299_SNP [dm6]	G	A	4.543e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	8979807	2L_8979807_SNP [dm3] 2L_8979807_SNP [dm6]	A	G	4.544e^-4	0.946	UPSTREAM CG18662 INTRON CG13101
3R	16577595	3R_16577595_SNP [dm3] 3R_20751873_SNP [dm6]	A	T	4.545e^-4	0.946	INTRON CG42322
X	3000672	X_3000672_SNP [dm3] X_3106639_SNP [dm6]	C	T	4.562e^-4	0.946	INTRON kirre
2R	17846385	2R_17846385_SNP [dm3] 2R_21958880_SNP [dm6]	G	C	4.568e^-4	0.946	INTERGENIC
3R	15278065	3R_15278065_SNP [dm3] 3R_19452343_SNP [dm6]	A	G	4.582e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	8087807	X_8087807_SNP [dm3] X_8193774_SNP [dm6]	C	A	4.585e^-4	0.946	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14069025	2L_14069025_SNP [dm3] 2L_14069025_SNP [dm6]	T	C	4.592e^-4	0.946	INTRON nAChRalpha5
X	14019128	X_14019128_SNP [dm3] X_14125095_SNP [dm6]	C	T	4.598e^-4	0.946	INTERGENIC
3L	7015805	3L_7015805_INS [dm3] 3L_7022705_INS [dm6]	T	TGT	4.599e^-4	0.946	INTRON Mp
2R	4967516	2R_4967516_SNP [dm3] 2R_9080011_SNP [dm6]	T	A	4.606e^-4	0.946	INTRON CG8083
3R	15278062	3R_15278062_SNP [dm3] 3R_19452340_SNP [dm6]	T	A	4.610e^-4	0.946	INTRON CG31221	TF binding site mE1_TFBS_Kr
2R	3984567	2R_3984567_SNP [dm3] 2R_8097062_SNP [dm6]	G	T	4.613e^-4	0.946	UTR_3_PRIME CG8712 DOWNSTREAM CG8713
2L	18623518	2L_18623518_SNP [dm3] 2L_18623518_SNP [dm6]	C	T	4.613e^-4	0.946	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1544416	2L_1544416_SNP [dm3] 2L_1544416_SNP [dm6]	A	T	4.620e^-4	0.946	INTERGENIC
3L	2379054	3L_2379054_SNP [dm3] 3L_2379054_SNP [dm6]	C	T	4.622e^-4	0.946	UTR_5_PRIME CG45186 INTRON CG45186
3L	5518891	3L_5518891_SNP [dm3] 3L_5525791_SNP [dm6]	A	C	4.622e^-4	0.946	INTRON Lkr
2R	11432458	2R_11432458_SNP [dm3] 2R_15544953_SNP [dm6]	T	C	4.623e^-4	0.946	SYNONYMOUS_CODING CG8192 DOWNSTREAM eIF2B-gamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	452157	4_452157_SNP [dm3] 4_431531_SNP [dm6]	G	A	4.625e^-4	0.946	EXON CR44024
2R	11772454	2R_11772454_DEL [dm3] 2R_15884949_DEL [dm6]	GA	G	4.628e^-4	0.946	INTRON sli
2R	3413389	2R_3413389_SNP [dm3] 2R_7525884_SNP [dm6]	G	T	4.637e^-4	0.946	UPSTREAM Orc1 DOWNSTREAM Drat INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
X	4107891	X_4107891_SNP [dm3] X_4213858_SNP [dm6]	T	C	4.640e^-4	0.946	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
4	331345	4_331345_SNP [dm3] 4_310719_SNP [dm6]	A	C	4.647e^-4	0.946	UTR_3_PRIME Rad23 DOWNSTREAM Zip102B & 1 other
X	4193022	X_4193022_SNP [dm3] X_4298989_SNP [dm6]	C	A	4.649e^-4	0.946	INTERGENIC
2L	7305268	2L_7305268_SNP [dm3] 2L_7305268_SNP [dm6]	T	C	4.653e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
4	230635	4_230635_SNP [dm3] 4_210009_SNP [dm6]	A	G	4.655e^-4	0.946	UPSTREAM Crk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
4	339227	4_339227_DEL [dm3] 4_318601_DEL [dm6]	AA	A	4.665e^-4	0.946	INTRON CG32850	transposable element FlyBase
3L	12124462	3L_12124462_SNP [dm3] 3L_12131362_SNP [dm6]	C	T	4.673e^-4	0.946	SYNONYMOUS_CODING Lsp2 UPSTREAM CG11534	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17740582	2R_17740582_SNP [dm3] 2R_21853077_SNP [dm6]	T	G	4.689e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
2R	818026	2R_818026_SNP [dm3] 2R_4930521_SNP [dm6]	C	T	4.690e^-4	0.946	INTRON Ir41a
3R	9239697	3R_9239697_SNP [dm3] 3R_13413975_SNP [dm6]	A	T	4.690e^-4	0.946	INTRON yellow-e
X	12400076	X_12400076_SNP [dm3] X_12506043_SNP [dm6]	C	A	4.692e^-4	0.946	INTRON CG2556
3R	12874799	3R_12874799_SNP [dm3] 3R_17049077_SNP [dm6]	A	T	4.700e^-4	0.946	DOWNSTREAM Patr-1 INTERGENIC
2L	3279873	2L_3279873_SNP [dm3] 2L_3279873_SNP [dm6]	G	A	4.714e^-4	0.946	UPSTREAM CG3332 INTRON CG3332
X	15249529	X_15249529_INS [dm3] X_15355496_INS [dm6]	T	TGGCAGCTTT	4.716e^-4	0.946	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
X	4651903	X_4651903_DEL [dm3] X_4757870_DEL [dm6]	AG	A	4.729e^-4	0.946	INTERGENIC
3R	4400901	3R_4400901_SNP [dm3] 3R_8575179_SNP [dm6]	A	C	4.729e^-4	0.946	INTERGENIC
X	20881660	X_20881660_SNP [dm3] X_21010633_SNP [dm6]	A	G	4.740e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6975869	2L_6975869_SNP [dm3] 2L_6975869_SNP [dm6]	G	T	4.746e^-4	0.946	INTRON uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6975870	2L_6975870_SNP [dm3] 2L_6975870_SNP [dm6]	G	A	4.746e^-4	0.946	INTRON uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6975895	2L_6975895_SNP [dm3] 2L_6975895_SNP [dm6]	A	G	4.746e^-4	0.946	INTRON uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6356224	3L_6356224_SNP [dm3] 3L_6363124_SNP [dm6]	G	T	4.759e^-4	0.946	INTERGENIC
2R	9932041	2R_9932041_SNP [dm3] 2R_14044536_SNP [dm6]	A	C	4.763e^-4	0.946	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4476691	X_4476691_SNP [dm3] X_4582658_SNP [dm6]	T	G	4.765e^-4	0.946	INTRON CR32773
3R	19910352	3R_19910352_SNP [dm3] 3R_24084630_SNP [dm6]	T	G	4.767e^-4	0.946	INTRON 4EHP
2R	9059161	2R_9059161_SNP [dm3] 2R_13171656_SNP [dm6]	C	G	4.768e^-4	0.946	UPSTREAM CR45142 DOWNSTREAM Spt-I INTRON AGBE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15399507	2L_15399507_SNP [dm3] 2L_15399507_SNP [dm6]	T	C	4.772e^-4	0.946	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
3L	2381004	3L_2381004_SNP [dm3] 3L_2381004_SNP [dm6]	C	T	4.776e^-4	0.946	INTRON CG45186
4	282921	4_282921_DEL [dm3] 4_262295_DEL [dm6]	TT	T	4.781e^-4	0.946	UTR_3_PRIME RhoGAP102A INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17817456	X_17817456_SNP [dm3] X_17923423_SNP [dm6]	G	A	4.785e^-4	0.946	SYNONYMOUS_CODING CG6847 DOWNSTREAM Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	22070268	3R_22070268_SNP [dm3] 3R_26244546_SNP [dm6]	C	G	4.790e^-4	0.946	INTRON CR42745
3R	2420232	3R_2420232_SNP [dm3] 3R_6594510_SNP [dm6]	T	G	4.792e^-4	0.946	INTERGENIC
X	4229071	X_4229071_SNP [dm3] X_4335038_SNP [dm6]	T	G	4.796e^-4	0.946	INTRON norpA
X	22061540	X_22061540_SNP [dm3] X_22659704_SNP [dm6]	T	A	4.798e^-4	0.946	INTRON CR44997
3R	3570920	3R_3570920_SNP [dm3] 3R_7745198_SNP [dm6]	T	G	4.800e^-4	0.946	INTERGENIC
2L	8034913	2L_8034913_SNP [dm3] 2L_8034913_SNP [dm6]	A	T	4.801e^-4	0.946	INTRON CG7367 & 1 other
2L	3770581	2L_3770581_SNP [dm3] 2L_3770581_SNP [dm6]	C	A	4.818e^-4	0.946	UPSTREAM CR43704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17682890	3L_17682890_SNP [dm3] 3L_17689790_SNP [dm6]	C	A	4.824e^-4	0.946	UPSTREAM Ccn INTERGENIC
3L	5916148	3L_5916148_SNP [dm3] 3L_5923048_SNP [dm6]	C	G	4.825e^-4	0.946	SYNONYMOUS_CODING CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4672194	X_4672194_SNP [dm3] X_4778161_SNP [dm6]	A	T	4.832e^-4	0.946	UPSTREAM CG2871 INTERGENIC
3L	918845	3L_918845_SNP [dm3] 3L_918845_SNP [dm6]	C	A	4.839e^-4	0.946	INTRON Glut1
3L	6356627	3L_6356627_SNP [dm3] 3L_6363527_SNP [dm6]	C	G	4.840e^-4	0.946	INTERGENIC
3L	11856382	3L_11856382_SNP [dm3] 3L_11863282_SNP [dm6]	C	T	4.844e^-4	0.946	UTR_5_PRIME CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad
X	16416571	X_16416571_SNP [dm3] X_16522538_SNP [dm6]	C	A	4.854e^-4	0.946	DOWNSTREAM Cnx14D INTRON para
X	3023892	X_3023892_SNP [dm3] X_3129859_SNP [dm6]	T	C	4.872e^-4	0.946	SYNONYMOUS_CODING kirre
2R	4967511	2R_4967511_SNP [dm3] 2R_9080006_SNP [dm6]	C	T	4.881e^-4	0.946	INTRON CG8083
2L	4371639	2L_4371639_SNP [dm3] 2L_4371639_SNP [dm6]	T	G	4.896e^-4	0.946	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	6763746	2L_6763746_SNP [dm3] 2L_6763746_SNP [dm6]	G	A	4.901e^-4	0.946	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10331573	2R_10331573_SNP [dm3] 2R_14444068_SNP [dm6]	C	A	4.901e^-4	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
2R	9119627	2R_9119627_SNP [dm3] 2R_13232122_SNP [dm6]	G	A	4.912e^-4	0.946	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
2L	7042025	2L_7042025_DEL [dm3] 2L_7042025_DEL [dm6]	AAAC	A	4.914e^-4	0.946	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3224517	2L_3224517_SNP [dm3] 2L_3224517_SNP [dm6]	A	C	4.915e^-4	0.946	INTERGENIC
2L	18286999	2L_18286999_SNP [dm3] 2L_18286999_SNP [dm6]	C	A	4.934e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3177972	2L_3177972_SNP [dm3] 2L_3177972_SNP [dm6]	T	C	4.937e^-4	0.946	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13892188	3R_13892188_SNP [dm3] 3R_18066466_SNP [dm6]	G	T	4.946e^-4	0.946	INTERGENIC
2R	11059352	2R_11059352_SNP [dm3] 2R_15171847_SNP [dm6]	C	T	4.955e^-4	0.946	INTRON igl
2R	15287207	2R_15287207_SNP [dm3] 2R_19399702_SNP [dm6]	A	C	4.957e^-4	0.946	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
3R	10204867	3R_10204867_SNP [dm3] 3R_14379145_SNP [dm6]	G	C	4.959e^-4	0.946	INTERGENIC
2L	8366946	2L_8366946_SNP [dm3] 2L_8366946_SNP [dm6]	G	A	4.960e^-4	0.946	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	4.969e^-4	0.946	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15404088	2L_15404088_SNP [dm3] 2L_15404088_SNP [dm6]	T	A	4.974e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10350612	2R_10350612_SNP [dm3] 2R_14463107_SNP [dm6]	G	A	5.000e^-4	0.946	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3522525	2L_3522525_SNP [dm3] 2L_3522525_SNP [dm6]	C	G	5.005e^-4	0.946	UTR_3_PRIME CG8851 & 1 other
3L	12608541	3L_12608541_SNP [dm3] 3L_12615441_SNP [dm6]	C	T	5.010e^-4	0.946	INTRON caup	TF binding site mE1_TFBS_cad
4	293560	4_293560_SNP [dm3] 4_272934_SNP [dm6]	T	G	5.012e^-4	0.946	INTRON NfI
3L	8739238	3L_8739238_SNP [dm3] 3L_8746138_SNP [dm6]	G	T	5.034e^-4	0.946	UPSTREAM Prm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	9196166	2R_9196166_DEL [dm3] 2R_13308661_DEL [dm6]	TCT	T	5.049e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5460860	3L_5460860_SNP [dm3] 3L_5467760_SNP [dm6]	A	G	5.051e^-4	0.946	INTERGENIC
2L	7103126	2L_7103126_SNP [dm3] 2L_7103126_SNP [dm6]	A	G	5.053e^-4	0.946	INTRON Pvf3
3L	10913113	3L_10913113_SNP [dm3] 3L_10920013_SNP [dm6]	A	C	5.055e^-4	0.946	INTERGENIC
3L	18961712	3L_18961712_SNP [dm3] 3L_18968612_SNP [dm6]	T	C	5.057e^-4	0.946	INTERGENIC
3R	12851499	3R_12851499_SNP [dm3] 3R_17025777_SNP [dm6]	T	C	5.057e^-4	0.946	SYNONYMOUS_CODING Pxd
4	326700	4_326700_SNP [dm3] 4_306074_SNP [dm6]	C	A	5.057e^-4	0.946	UTR_5_PRIME Syt7 UPSTREAM Syt7 INTRON Syt7	TF binding site BDTNP1_TFBS_dl
3R	12840081	3R_12840081_INS [dm3] 3R_17014359_INS [dm6]	A	AA	5.066e^-4	0.946	UPSTREAM Pxd INTERGENIC
3R	12874789	3R_12874789_SNP [dm3] 3R_17049067_SNP [dm6]	G	A	5.072e^-4	0.946	DOWNSTREAM Patr-1 INTERGENIC
3R	12880311	3R_12880311_SNP [dm3] 3R_17054589_SNP [dm6]	G	C	5.072e^-4	0.946	UPSTREAM Dad INTRON Dad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
4	318340	4_318340_SNP [dm3] 4_297714_SNP [dm6]	G	T	5.079e^-4	0.946	INTRON Syt7	transposable element FlyBase
3L	2074315	3L_2074315_SNP [dm3] 3L_2074315_SNP [dm6]	A	T	5.080e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
3R	10943075	3R_10943075_DEL [dm3] 3R_15117353_DEL [dm6]	TT	A	5.084e^-4	0.946	INTRON CG42788	TF binding site mE1_TFBS_sens
3L	15260037	3L_15260037_SNP [dm3] 3L_15266937_SNP [dm6]	G	C	5.085e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15287470	2R_15287470_SNP [dm3] 2R_19399965_SNP [dm6]	A	G	5.101e^-4	0.946	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
X	7358028	X_7358028_SNP [dm3] X_7463995_SNP [dm6]	G	C	5.104e^-4	0.946	INTERGENIC
3L	12853792	3L_12853792_SNP [dm3] 3L_12860692_SNP [dm6]	T	C	5.107e^-4	0.946	SYNONYMOUS_CODING CG32107
3L	3262636	3L_3262636_SNP [dm3] 3L_3262636_SNP [dm6]	G	A	5.109e^-4	0.946	INTRON ckd
3L	10711281	3L_10711281_SNP [dm3] 3L_10718181_SNP [dm6]	G	A	5.117e^-4	0.946	INTERGENIC
X	16576903	X_16576903_SNP [dm3] X_16682870_SNP [dm6]	G	A	5.124e^-4	0.946	INTRON Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12125048	3L_12125048_SNP [dm3] 3L_12131948_SNP [dm6]	T	A	5.124e^-4	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19413429	3R_19413429_SNP [dm3] 3R_23587707_SNP [dm6]	G	A	5.127e^-4	0.946	SYNONYMOUS_CODING CG10182
2R	18599810	2R_18599810_SNP [dm3] 2R_22712305_SNP [dm6]	G	A	5.134e^-4	0.946	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CG30268
2L	5974519	2L_5974519_SNP [dm3] 2L_5974519_SNP [dm6]	A	T	5.142e^-4	0.946	INTRON chic
X	19288278	X_19288278_SNP [dm3] X_19394245_SNP [dm6]	G	A	5.149e^-4	0.946	INTRON kek5
3L	7248159	3L_7248159_SNP [dm3] 3L_7255059_SNP [dm6]	G	A	5.149e^-4	0.946	INTRON CG14830
3R	18325406	3R_18325406_SNP [dm3] 3R_22499684_SNP [dm6]	A	G	5.151e^-4	0.946	INTRON Octbeta1R
2R	2075024	2R_2075024_SNP [dm3] 2R_6187519_SNP [dm6]	A	C	5.153e^-4	0.946	DOWNSTREAM Ptr INTRON Ptr
X	3847861	X_3847861_SNP [dm3] X_3953828_SNP [dm6]	T	C	5.155e^-4	0.946	UTR_3_PRIME Vap-33A
2R	11426436	2R_11426436_SNP [dm3] 2R_15538931_SNP [dm6]	G	A	5.157e^-4	0.946	SYNONYMOUS_CODING CG30467 DOWNSTREAM CG8187	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15669980	3L_15669980_SNP [dm3] 3L_15676880_SNP [dm6]	G	T	5.159e^-4	0.946	INTERGENIC
2L	2070648	2L_2070648_SNP [dm3] 2L_2070648_SNP [dm6]	C	T	5.165e^-4	0.946	INTRON dpr3
2L	20230443	2L_20230443_SNP [dm3] 2L_20230443_SNP [dm6]	C	T	5.166e^-4	0.946	INTERGENIC
2L	7010262	2L_7010262_SNP [dm3] 2L_7010262_SNP [dm6]	C	G	5.169e^-4	0.946	UPSTREAM uif INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	15295921	X_15295921_DEL [dm3] X_15401888_DEL [dm6]	AA	A	5.175e^-4	0.946	INTRON Cngl
3L	9246687	3L_9246687_SNP [dm3] 3L_9253587_SNP [dm6]	A	C	5.176e^-4	0.946	INTRON GluRIB
2L	3835127	2L_3835127_SNP [dm3] 2L_3835127_SNP [dm6]	C	T	5.176e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26032662	3R_26032662_SNP [dm3] 3R_30206940_SNP [dm6]	G	A	5.182e^-4	0.946	UPSTREAM snoRNA:Psi28S-2149 DOWNSTREAM snoRNA:Psi18S-1377e & 5 others INTRON RpS7
3L	6270148	3L_6270148_SNP [dm3] 3L_6277048_SNP [dm6]	T	G	5.191e^-4	0.946	DOWNSTREAM CG43168 INTERGENIC
X	7780331	X_7780331_SNP [dm3] X_7886298_SNP [dm6]	G	T	5.205e^-4	0.946	DOWNSTREAM CG10932 INTRON Ir7g
3L	3856755	3L_3856755_SNP [dm3] 3L_3856755_SNP [dm6]	A	T	5.206e^-4	0.946	INTRON Awh
3L	3269821	3L_3269821_SNP [dm3] 3L_3269821_SNP [dm6]	C	A	5.212e^-4	0.946	DOWNSTREAM CG34265 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13892195	3R_13892195_SNP [dm3] 3R_18066473_SNP [dm6]	T	A	5.214e^-4	0.946	INTERGENIC
2R	7035165	2R_7035165_SNP [dm3] 2R_11147660_SNP [dm6]	A	G	5.222e^-4	0.946	UTR_3_PRIME CG12391 DOWNSTREAM CG13231 INTRON CG13229
3L	3951520	3L_3951520_SNP [dm3] 3L_3951520_SNP [dm6]	G	A	5.224e^-4	0.946	INTRON CG14984
X	12763659	X_12763659_SNP [dm3] X_12869626_SNP [dm6]	C	A	5.233e^-4	0.946	UPSTREAM Pde9 INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	899366	2L_899366_SNP [dm3] 2L_899366_SNP [dm6]	G	C	5.238e^-4	0.946	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13375329	3L_13375329_SNP [dm3] 3L_13382229_SNP [dm6]	A	G	5.261e^-4	0.946	UPSTREAM CG14107 & 1 other INTERGENIC
3L	2566283	3L_2566283_SNP [dm3] 3L_2566283_SNP [dm6]	T	A	5.262e^-4	0.946	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10779284	3L_10779284_SNP [dm3] 3L_10786184_SNP [dm6]	T	A	5.265e^-4	0.946	DOWNSTREAM CR44544 INTERGENIC
2L	7160780	2L_7160780_SNP [dm3] 2L_7160780_SNP [dm6]	G	A	5.270e^-4	0.946	INTERGENIC
3L	12125073	3L_12125073_SNP [dm3] 3L_12131973_SNP [dm6]	G	A	5.272e^-4	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15291130	2L_15291130_SNP [dm3] 2L_15291130_SNP [dm6]	G	A	5.273e^-4	0.946	DOWNSTREAM CG15260 INTERGENIC
2L	15291139	2L_15291139_SNP [dm3] 2L_15291139_SNP [dm6]	A	T	5.273e^-4	0.946	DOWNSTREAM CG15260 INTERGENIC
2R	6486282	2R_6486282_SNP [dm3] 2R_10598777_SNP [dm6]	C	A	5.274e^-4	0.946	INTRON psq
X	20605589	X_20605589_SNP [dm3] X_20734562_SNP [dm6]	G	A	5.278e^-4	0.946	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12463648	2R_12463648_SNP [dm3] 2R_16576143_SNP [dm6]	T	G	5.278e^-4	0.946	UTR_5_PRIME CG8317 INTRON CG8317
3L	12125108	3L_12125108_SNP [dm3] 3L_12132008_SNP [dm6]	A	T	5.279e^-4	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13892190	3R_13892190_SNP [dm3] 3R_18066468_SNP [dm6]	A	C	5.284e^-4	0.946	INTERGENIC
X	13214388	X_13214388_DEL [dm3] X_13320355_DEL [dm6]	TTTC	A	5.288e^-4	0.946	UPSTREAM IP3K2 INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	18638452	2L_18638452_SNP [dm3] 2L_18638452_SNP [dm6]	C	T	5.290e^-4	0.946	INTRON MESR3

By genomic position
Variant impact
Gene name

mn_Protein_LowDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results