DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.800e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05524

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4724	0.0648

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2172 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17771268	3L_17771268_SNP [dm3] 3L_17778168_SNP [dm6]	G	T	2.283e^-7	0.428	INTERGENIC
3L	17771270	3L_17771270_SNP [dm3] 3L_17778170_SNP [dm6]	G	A	3.453e^-6	0.814	INTERGENIC
3L	3794031	3L_3794031_SNP [dm3] 3L_3794031_SNP [dm6]	C	T	3.542e^-6	0.814	INTRON CG32264
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	4.054e^-6	0.814	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13680796	2L_13680796_SNP [dm3] 2L_13680796_SNP [dm6]	T	C	4.323e^-6	0.814	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	3792824	3L_3792824_SNP [dm3] 3L_3792824_SNP [dm6]	C	A	5.409e^-6	0.814	INTRON CG32264
3R	11809305	3R_11809305_SNP [dm3] 3R_15983583_SNP [dm6]	C	A	6.439e^-6	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	1998661	3L_1998661_SNP [dm3] 3L_1998661_SNP [dm6]	T	C	6.763e^-6	0.814	INTERGENIC
3L	17771230	3L_17771230_SNP [dm3] 3L_17778130_SNP [dm6]	G	C	7.534e^-6	0.814	INTERGENIC
2L	8006587	2L_8006587_SNP [dm3] 2L_8006587_SNP [dm6]	G	C	7.591e^-6	0.814	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12120393	2R_12120393_SNP [dm3] 2R_16232888_SNP [dm6]	T	A	7.644e^-6	0.814	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17771337	3L_17771337_SNP [dm3] 3L_17778237_SNP [dm6]	T	A	7.914e^-6	0.814	INTERGENIC
2R	12570080	2R_12570080_SNP [dm3] 2R_16682575_SNP [dm6]	A	G	8.274e^-6	0.814	INTRON CG30463
3L	10244988	3L_10244988_SNP [dm3] 3L_10251888_SNP [dm6]	G	T	8.680e^-6	0.814	INTERGENIC
X	5388885	X_5388885_SNP [dm3] X_5494852_SNP [dm6]	T	C	9.463e^-6	0.814	NON_SYNONYMOUS_CODING frma DOWNSTREAM SPR
2L	20814031	2L_20814031_SNP [dm3] 2L_20814031_SNP [dm6]	G	A	1.012e^-5	0.814	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	3794061	3L_3794061_SNP [dm3] 3L_3794061_SNP [dm6]	A	C	1.064e^-5	0.814	INTRON CG32264
3L	10344035	3L_10344035_INS [dm3] 3L_10350935_INS [dm6]	A	ATTTTTATA	1.087e^-5	0.814	INTRON CR44327
3L	17771241	3L_17771241_SNP [dm3] 3L_17778141_SNP [dm6]	C	T	1.123e^-5	0.814	INTERGENIC
3L	19461448	3L_19461448_SNP [dm3] 3L_19468348_SNP [dm6]	T	C	1.166e^-5	0.814	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	23078553	3L_23078553_DEL [dm3] 3L_23085453_DEL [dm6]	TT	T	1.242e^-5	0.814	INTERGENIC	transposable element FlyBase
3L	17771253	3L_17771253_SNP [dm3] 3L_17778153_SNP [dm6]	A	T	1.249e^-5	0.814	INTERGENIC
2R	18939225	2R_18939225_SNP [dm3] 2R_23051702_SNP [dm6]	A	G	1.254e^-5	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6975633	3L_6975633_SNP [dm3] 3L_6982533_SNP [dm6]	C	T	1.279e^-5	0.814	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	1.316e^-5	0.814	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17771247	3L_17771247_SNP [dm3] 3L_17778147_SNP [dm6]	C	T	1.424e^-5	0.814	INTERGENIC
3R	21331877	3R_21331877_SNP [dm3] 3R_25506155_SNP [dm6]	A	T	1.429e^-5	0.814	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	1.431e^-5	0.814	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16566918	2R_16566918_SNP [dm3] 2R_20679413_SNP [dm6]	C	T	1.468e^-5	0.814	INTERGENIC
3L	17771226	3L_17771226_SNP [dm3] 3L_17778126_SNP [dm6]	A	G	1.548e^-5	0.814	INTERGENIC
3L	3794055	3L_3794055_SNP [dm3] 3L_3794055_SNP [dm6]	C	A	1.584e^-5	0.814	INTRON CG32264
3R	9950932	3R_9950932_SNP [dm3] 3R_14125210_SNP [dm6]	G	A	1.644e^-5	0.814	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
3L	12825570	3L_12825570_SNP [dm3] 3L_12832470_SNP [dm6]	C	G	1.676e^-5	0.814	UTR_5_PRIME CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9522699	3L_9522699_SNP [dm3] 3L_9529599_SNP [dm6]	T	A	1.711e^-5	0.814	INTRON Or67a
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	1.758e^-5	0.814	INTERGENIC
3L	3794054	3L_3794054_SNP [dm3] 3L_3794054_SNP [dm6]	T	A	1.812e^-5	0.814	INTRON CG32264
2L	9842879	2L_9842879_SNP [dm3] 2L_9842879_SNP [dm6]	C	A	1.832e^-5	0.814	INTRON nAChRalpha6
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	1.838e^-5	0.814	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7904417	2R_7904417_INS [dm3] 2R_12016912_INS [dm6]	T	TT	1.887e^-5	0.814	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11809314	3R_11809314_SNP [dm3] 3R_15983592_SNP [dm6]	A	G	1.899e^-5	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	3792814	3L_3792814_SNP [dm3] 3L_3792814_SNP [dm6]	G	A	1.956e^-5	0.814	INTRON CG32264
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	2.058e^-5	0.814	INTERGENIC
3L	4269170	3L_4269170_SNP [dm3] 3L_4269170_SNP [dm6]	G	T	2.181e^-5	0.814	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14287252	3R_14287252_SNP [dm3] 3R_18461530_SNP [dm6]	C	G	2.272e^-5	0.814	INTRON fru
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	2.278e^-5	0.814	INTERGENIC
2R	13076733	2R_13076733_SNP [dm3] 2R_17189228_SNP [dm6]	G	A	2.333e^-5	0.814	UPSTREAM CR45323 & 1 other INTERGENIC
3L	18247265	3L_18247265_SNP [dm3] 3L_18254165_SNP [dm6]	A	C	2.374e^-5	0.814	INTERGENIC
3L	3686501	3L_3686501_SNP [dm3] 3L_3686501_SNP [dm6]	C	T	2.418e^-5	0.814	INTERGENIC
2L	6834373	2L_6834373_SNP [dm3] 2L_6834373_SNP [dm6]	A	T	2.458e^-5	0.814	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1232730	3L_1232730_SNP [dm3] 3L_1232730_SNP [dm6]	C	A	2.539e^-5	0.814	UPSTREAM CG33965 DOWNSTREAM mwh INTERGENIC
X	20151268	X_20151268_SNP [dm3] X_20280241_SNP [dm6]	C	A	2.633e^-5	0.814	INTERGENIC
3R	25155824	3R_25155824_SNP [dm3] 3R_29330102_SNP [dm6]	C	T	2.677e^-5	0.814	INTERGENIC
X	20634270	X_20634270_DEL [dm3] X_20763243_DEL [dm6]	ATATTGT	A	2.687e^-5	0.814	UTR_3_PRIME shakB
3L	1252526	3L_1252526_SNP [dm3] 3L_1252526_SNP [dm6]	A	C	2.720e^-5	0.814	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20778770	X_20778770_SNP [dm3] X_20907743_SNP [dm6]	A	C	2.828e^-5	0.814	INTRON shakB
3R	26979231	3R_26979231_SNP [dm3] 3R_31153509_SNP [dm6]	G	A	2.869e^-5	0.814	SYNONYMOUS_CODING Gycbeta100B
2R	4090553	2R_4090553_INS [dm3] 2R_8203048_INS [dm6]	A	AGA	2.899e^-5	0.814	INTRON LRP1
3L	4269218	3L_4269218_SNP [dm3] 3L_4269218_SNP [dm6]	T	G	2.922e^-5	0.814	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	20595131	3L_20595131_SNP [dm3] 3L_20602031_SNP [dm6]	T	C	2.932e^-5	0.814	INTRON knrl
2R	5229768	2R_5229768_SNP [dm3] 2R_9342263_SNP [dm6]	G	A	3.063e^-5	0.814	INTRON CG13954 & 1 other
2R	13076808	2R_13076808_SNP [dm3] 2R_17189303_SNP [dm6]	C	A	3.088e^-5	0.814	UPSTREAM CR45323 & 1 other INTERGENIC
3R	9951502	3R_9951502_SNP [dm3] 3R_14125780_SNP [dm6]	C	T	3.142e^-5	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21418496	3L_21418496_SNP [dm3] 3L_21425396_SNP [dm6]	T	C	3.175e^-5	0.814	NON_SYNONYMOUS_CODING barc DOWNSTREAM rgn
2L	7049753	2L_7049753_INS [dm3] 2L_7049753_INS [dm6]	A	AGTA	3.281e^-5	0.814	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	3.287e^-5	0.814	INTERGENIC
3R	14773510	3R_14773510_SNP [dm3] 3R_18947788_SNP [dm6]	C	T	3.320e^-5	0.814	NON_SYNONYMOUS_CODING CG42613
3R	11250900	3R_11250900_SNP [dm3] 3R_15425178_SNP [dm6]	A	G	3.360e^-5	0.814	SYNONYMOUS_CODING CG6118 UTR_5_PRIME CG6118	TF binding site mE1_TFBS_cad
3R	21065531	3R_21065531_SNP [dm3] 3R_25239809_SNP [dm6]	C	T	3.414e^-5	0.814	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
3L	17771023	3L_17771023_SNP [dm3] 3L_17777923_SNP [dm6]	A	G	3.450e^-5	0.814	INTERGENIC
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	3.465e^-5	0.814	INTERGENIC
3R	14025879	3R_14025879_SNP [dm3] 3R_18200157_SNP [dm6]	A	C	3.626e^-5	0.814	UPSTREAM CG7985 & 1 other INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19942192	3L_19942192_SNP [dm3] 3L_19949092_SNP [dm6]	T	A	3.818e^-5	0.814	DOWNSTREAM CG32219 INTRON Ac76E
3L	7726957	3L_7726957_SNP [dm3] 3L_7733857_SNP [dm6]	C	T	3.825e^-5	0.814	INTRON CG32373 & 1 other
3L	4101387	3L_4101387_SNP [dm3] 3L_4101387_SNP [dm6]	T	C	3.829e^-5	0.814	UPSTREAM CG14995 INTRON CG14995	TF binding site BDTNP1_TFBS_dl
3R	18331703	3R_18331703_SNP [dm3] 3R_22505981_SNP [dm6]	C	T	4.079e^-5	0.814	INTRON Octbeta1R
2R	9448459	2R_9448459_DEL [dm3] 2R_13560954_DEL [dm6]	TT	T	4.119e^-5	0.814	DOWNSTREAM CG13334 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20634278	X_20634278_SNP [dm3] X_20763251_SNP [dm6]	C	T	4.123e^-5	0.814	UTR_3_PRIME shakB
2R	2734808	2R_2734808_SNP [dm3] 2R_6847303_SNP [dm6]	T	A	4.175e^-5	0.814	INTERGENIC
3R	25771343	3R_25771343_SNP [dm3] 3R_29945621_SNP [dm6]	A	T	4.191e^-5	0.814	SYNONYMOUS_CODING CG15523
2R	13076873	2R_13076873_SNP [dm3] 2R_17189368_SNP [dm6]	T	A	4.228e^-5	0.814	UPSTREAM CR44389 EXON CR45323
3R	26301892	3R_26301892_SNP [dm3] 3R_30476170_SNP [dm6]	G	A	4.321e^-5	0.814	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6834330	2L_6834330_SNP [dm3] 2L_6834330_SNP [dm6]	G	T	4.471e^-5	0.814	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3798224	3L_3798224_SNP [dm3] 3L_3798224_SNP [dm6]	A	C	4.495e^-5	0.814	INTRON CG32264
3R	9094060	3R_9094060_SNP [dm3] 3R_13268338_SNP [dm6]	G	T	4.559e^-5	0.814	NON_SYNONYMOUS_CODING Su_var_3-7 DOWNSTREAM CG8449	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9951286	3R_9951286_SNP [dm3] 3R_14125564_SNP [dm6]	A	T	4.607e^-5	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13641000	2L_13641000_INS [dm3] 2L_13641000_INS [dm6]	T	TT	4.736e^-5	0.814	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13076850	2R_13076850_SNP [dm3] 2R_17189345_SNP [dm6]	G	A	4.750e^-5	0.814	UPSTREAM CR44389 EXON CR45323
3R	26109868	3R_26109868_SNP [dm3] 3R_30284146_SNP [dm6]	A	C	4.758e^-5	0.814	INTRON hdc
2R	18939264	2R_18939264_SNP [dm3] 2R_23051741_SNP [dm6]	C	G	4.826e^-5	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18926134	2R_18926134_SNP [dm3] 2R_23038611_SNP [dm6]	A	C	4.838e^-5	0.814	INTRON twi & 1 other
3R	20261327	3R_20261327_INS [dm3] 3R_24435605_INS [dm6]	C	CAACC	4.847e^-5	0.814	INTRON nAChRalpha1
X	20151799	X_20151799_SNP [dm3] X_20280772_SNP [dm6]	G	T	4.857e^-5	0.814	INTERGENIC
2R	8931505	2R_8931505_SNP [dm3] 2R_13044000_SNP [dm6]	T	C	4.887e^-5	0.814	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	19461434	3L_19461434_SNP [dm3] 3L_19468334_SNP [dm6]	A	C	4.928e^-5	0.814	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
2R	7050264	2R_7050264_SNP [dm3] 2R_11162759_SNP [dm6]	G	C	4.930e^-5	0.814	INTRON shn & 1 other
2R	18925957	2R_18925957_SNP [dm3] 2R_23038434_SNP [dm6]	T	A	4.948e^-5	0.814	INTRON twi & 1 other
X	5093877	X_5093877_SNP [dm3] X_5199844_SNP [dm6]	C	T	4.970e^-5	0.814	INTRON rg & 1 other
3L	2945621	3L_2945621_SNP [dm3] 3L_2945621_SNP [dm6]	A	G	5.033e^-5	0.814	UTR_3_PRIME Shab INTRON Shab
3R	21331869	3R_21331869_SNP [dm3] 3R_25506147_SNP [dm6]	A	G	5.129e^-5	0.814	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_inv
3L	20392400	3L_20392400_SNP [dm3] 3L_20399300_SNP [dm6]	A	G	5.138e^-5	0.814	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12110205	3R_12110205_SNP [dm3] 3R_16284483_SNP [dm6]	T	C	5.189e^-5	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21601049	3L_21601049_SNP [dm3] 3L_21607949_SNP [dm6]	C	T	5.272e^-5	0.814	UPSTREAM TfAP-2 INTRON TfAP-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7418667	2L_7418667_SNP [dm3] 2L_7418667_SNP [dm6]	A	C	5.297e^-5	0.814	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	12120392	2R_12120392_SNP [dm3] 2R_16232887_SNP [dm6]	A	C	5.306e^-5	0.814	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16011941	3L_16011941_SNP [dm3] 3L_16018841_SNP [dm6]	G	A	5.346e^-5	0.814	UPSTREAM CR43950 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9951448	3R_9951448_SNP [dm3] 3R_14125726_SNP [dm6]	C	T	5.406e^-5	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12105616	3R_12105616_SNP [dm3] 3R_16279894_SNP [dm6]	A	C	5.424e^-5	0.814	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
X	9503222	X_9503222_SNP [dm3] X_9609189_SNP [dm6]	T	C	5.509e^-5	0.814	START_GAINED CG42797 UTR_5_PRIME CG42797 UPSTREAM Aats-lys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13312753	3R_13312753_SNP [dm3] 3R_17487031_SNP [dm6]	C	T	5.520e^-5	0.814	INTRON Dscam3
2R	8931506	2R_8931506_SNP [dm3] 2R_13044001_SNP [dm6]	G	C	5.522e^-5	0.814	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	2803748	3L_2803748_SNP [dm3] 3L_2803748_SNP [dm6]	G	A	5.527e^-5	0.814	INTRON CG43444
2R	13877890	2R_13877890_SNP [dm3] 2R_17990385_SNP [dm6]	G	C	5.569e^-5	0.814	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	5.581e^-5	0.814	INTERGENIC
3R	12464013	3R_12464013_SNP [dm3] 3R_16638291_SNP [dm6]	C	T	5.616e^-5	0.814	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12110222	3R_12110222_SNP [dm3] 3R_16284500_SNP [dm6]	T	C	5.925e^-5	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9401582	3R_9401582_SNP [dm3] 3R_13575860_SNP [dm6]	G	C	6.005e^-5	0.814	DOWNSTREAM CR43848 INTERGENIC
3L	1253832	3L_1253832_SNP [dm3] 3L_1253832_SNP [dm6]	A	G	6.052e^-5	0.814	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad
3L	12825565	3L_12825565_SNP [dm3] 3L_12832465_SNP [dm6]	C	T	6.094e^-5	0.814	UTR_5_PRIME CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9094676	3R_9094676_SNP [dm3] 3R_13268954_SNP [dm6]	C	T	6.136e^-5	0.814	UTR_3_PRIME Su_var_3-7 DOWNSTREAM CG8449	TF binding site mE1_TFBS_HSA
3L	1290222	3L_1290222_SNP [dm3] 3L_1290222_SNP [dm6]	T	G	6.322e^-5	0.814	INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12826447	3L_12826447_SNP [dm3] 3L_12833347_SNP [dm6]	A	C	6.368e^-5	0.814	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl
3L	10189582	3L_10189582_SNP [dm3] 3L_10196482_SNP [dm6]	G	T	6.462e^-5	0.814	INTRON ect	TF binding site mE1_TFBS_chinmo
3R	25784965	3R_25784965_SNP [dm3] 3R_29959243_SNP [dm6]	A	T	6.468e^-5	0.814	NON_SYNONYMOUS_CODING TkR99D
3L	17770864	3L_17770864_SNP [dm3] 3L_17777764_SNP [dm6]	A	G	6.587e^-5	0.814	INTERGENIC
3L	21759519	3L_21759519_SNP [dm3] 3L_21766419_SNP [dm6]	G	A	6.609e^-5	0.814	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15627471	3R_15627471_SNP [dm3] 3R_19801749_SNP [dm6]	T	A	6.619e^-5	0.814	UPSTREAM tRNA:CR31471 INTRON bnl
3L	3719765	3L_3719765_SNP [dm3] 3L_3719765_SNP [dm6]	G	A	6.654e^-5	0.814	INTRON CG32264
3L	1815466	3L_1815466_SNP [dm3] 3L_1815466_SNP [dm6]	A	G	6.672e^-5	0.814	INTRON GV1
3L	17773440	3L_17773440_SNP [dm3] 3L_17780340_SNP [dm6]	C	A	6.692e^-5	0.814	INTERGENIC
3L	17773443	3L_17773443_SNP [dm3] 3L_17780343_SNP [dm6]	T	A	6.692e^-5	0.814	INTERGENIC
2R	12665744	2R_12665744_INS [dm3] 2R_16778239_INS [dm6]	T	TT	6.820e^-5	0.814	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13076696	2R_13076696_INS [dm3] 2R_17189191_INS [dm6]	T	TGGTTTTTGAGTTAT...	6.831e^-5	0.814	UPSTREAM CR45323 & 1 other INTERGENIC
3L	3949365	3L_3949365_SNP [dm3] 3L_3949365_SNP [dm6]	T	C	6.843e^-5	0.814	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
2R	16522886	2R_16522886_SNP [dm3] 2R_20635381_SNP [dm6]	G	A	6.903e^-5	0.814	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2L	7650590	2L_7650590_INS [dm3] 2L_7650590_INS [dm6]	T	TT	6.924e^-5	0.814	INTRON Slob
3R	25786343	3R_25786343_SNP [dm3] 3R_29960621_SNP [dm6]	A	C	6.945e^-5	0.814	INTRON TkR99D
2L	2042399	2L_2042399_SNP [dm3] 2L_2042399_SNP [dm6]	A	G	6.996e^-5	0.814	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22058066	X_22058066_SNP [dm3] X_22656230_SNP [dm6]	G	T	7.012e^-5	0.814	INTERGENIC
3L	4270203	3L_4270203_SNP [dm3] 3L_4270203_SNP [dm6]	G	A	7.028e^-5	0.814	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1697065	2L_1697065_SNP [dm3] 2L_1697065_SNP [dm6]	A	G	7.035e^-5	0.814	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	18023407	2R_18023407_SNP [dm3] 2R_22135902_SNP [dm6]	C	A	7.265e^-5	0.814	INTERGENIC
X	16814059	X_16814059_SNP [dm3] X_16920026_SNP [dm6]	T	G	7.315e^-5	0.814	INTRON CG4928
2L	7333256	2L_7333256_SNP [dm3] 2L_7333256_SNP [dm6]	T	A	7.481e^-5	0.814	UPSTREAM Wnt6 INTERGENIC
3L	14436971	3L_14436971_SNP [dm3] 3L_14443871_SNP [dm6]	G	A	7.491e^-5	0.814	INTRON bbg
3L	4269221	3L_4269221_SNP [dm3] 3L_4269221_SNP [dm6]	G	T	7.534e^-5	0.814	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9099346	3R_9099346_SNP [dm3] 3R_13273624_SNP [dm6]	A	G	7.639e^-5	0.814	INTERGENIC
3L	11533687	3L_11533687_SNP [dm3] 3L_11540587_SNP [dm6]	C	T	7.724e^-5	0.814	INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20595178	3L_20595178_SNP [dm3] 3L_20602078_SNP [dm6]	G	A	7.740e^-5	0.814	INTRON knrl
3R	9951541	3R_9951541_SNP [dm3] 3R_14125819_SNP [dm6]	A	T	7.836e^-5	0.814	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14351068	2R_14351068_SNP [dm3] 2R_18463563_SNP [dm6]	T	C	7.862e^-5	0.814	INTRON CG30116
3L	10473404	3L_10473404_SNP [dm3] 3L_10480304_SNP [dm6]	C	G	7.939e^-5	0.814	INTERGENIC
2R	19506109	2R_19506109_SNP [dm3] 2R_23618586_SNP [dm6]	T	C	8.127e^-5	0.814	INTERGENIC
2R	13877841	2R_13877841_SNP [dm3] 2R_17990336_SNP [dm6]	A	G	8.312e^-5	0.814	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3794142	3L_3794142_DEL [dm3] 3L_3794142_DEL [dm6]	TT	T	8.326e^-5	0.814	INTRON CG32264
2R	10532995	2R_10532995_SNP [dm3] 2R_14645490_SNP [dm6]	A	C	8.335e^-5	0.814	SYNONYMOUS_CODING CG10139	TF binding site BDTNP1_TFBS_dl
3R	23210969	3R_23210969_SNP [dm3] 3R_27385247_SNP [dm6]	T	C	8.376e^-5	0.814	INTRON side
3L	15268855	3L_15268855_SNP [dm3] 3L_15275755_SNP [dm6]	A	T	8.401e^-5	0.814	INTERGENIC
2R	18962514	2R_18962514_INS [dm3] 2R_23074991_INS [dm6]	T	TTAATTTTT	8.419e^-5	0.814	UPSTREAM CG3085 & 1 other INTRON CG3085	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12108896	3R_12108896_SNP [dm3] 3R_16283174_SNP [dm6]	A	G	8.419e^-5	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	21787943	3R_21787943_SNP [dm3] 3R_25962221_SNP [dm6]	C	G	8.463e^-5	0.814	DOWNSTREAM CG14540 INTRON boss
2R	10014273	2R_10014273_SNP [dm3] 2R_14126768_SNP [dm6]	G	A	8.478e^-5	0.814	INTRON Prosap
3R	11605081	3R_11605081_INS [dm3] 3R_15779359_INS [dm6]	T	TT	8.519e^-5	0.814	UPSTREAM CG5614 INTERGENIC
3R	14360169	3R_14360169_SNP [dm3] 3R_18534447_SNP [dm6]	G	A	8.522e^-5	0.814	INTRON fru
3R	11605073	3R_11605073_SNP [dm3] 3R_15779351_SNP [dm6]	A	G	8.606e^-5	0.814	UPSTREAM CG5614 INTERGENIC
X	14368122	X_14368122_SNP [dm3] X_14474089_SNP [dm6]	G	A	8.641e^-5	0.814	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9401573	3R_9401573_SNP [dm3] 3R_13575851_SNP [dm6]	A	G	8.665e^-5	0.814	DOWNSTREAM CR43848 INTERGENIC
3R	8943514	3R_8943514_SNP [dm3] 3R_13117792_SNP [dm6]	G	A	8.701e^-5	0.814	INTRON timeout
3L	6131752	3L_6131752_SNP [dm3] 3L_6138652_SNP [dm6]	A	G	8.762e^-5	0.814	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
X	20633501	X_20633501_SNP [dm3] X_20762474_SNP [dm6]	A	G	8.768e^-5	0.814	UTR_3_PRIME shakB
X	20634081	X_20634081_SNP [dm3] X_20763054_SNP [dm6]	C	A	8.808e^-5	0.814	UTR_3_PRIME shakB
X	20634221	X_20634221_INS [dm3] X_20763194_INS [dm6]	T	TGCTTGCCCGAACTCTTGCC...	8.869e^-5	0.814	UTR_3_PRIME shakB
2R	3359440	2R_3359440_SNP [dm3] 2R_7471935_SNP [dm6]	T	G	8.880e^-5	0.814	INTRON Aldh-III
3R	25772483	3R_25772483_SNP [dm3] 3R_29946761_SNP [dm6]	G	A	8.986e^-5	0.814	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3L	10470485	3L_10470485_SNP [dm3] 3L_10477385_SNP [dm6]	C	A	8.995e^-5	0.814	INTERGENIC
3L	10343924	3L_10343924_SNP [dm3] 3L_10350824_SNP [dm6]	T	G	9.023e^-5	0.814	INTRON CR44327
2R	3347833	2R_3347833_SNP [dm3] 2R_7460328_SNP [dm6]	A	G	9.082e^-5	0.814	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2L	1939430	2L_1939430_SNP [dm3] 2L_1939430_SNP [dm6]	T	C	9.093e^-5	0.814	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25298487	3R_25298487_SNP [dm3] 3R_29472765_SNP [dm6]	A	T	9.107e^-5	0.814	INTRON Ptp99A
3R	14337950	3R_14337950_SNP [dm3] 3R_18512228_SNP [dm6]	A	T	9.115e^-5	0.814	INTRON fru
2R	6609641	2R_6609641_DEL [dm3] 2R_10722136_DEL [dm6]	TT	T	9.193e^-5	0.814	UTR_3_PRIME Rab3 DOWNSTREAM stan
3L	8864775	3L_8864775_SNP [dm3] 3L_8871675_SNP [dm6]	T	A	9.234e^-5	0.814	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	9821723	2L_9821723_SNP [dm3] 2L_9821723_SNP [dm6]	A	T	9.393e^-5	0.814	INTRON nAChRalpha6
2L	8174723	2L_8174723_SNP [dm3] 2L_8174723_SNP [dm6]	G	A	9.421e^-5	0.814	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8934045	3R_8934045_INS [dm3] 3R_13108323_INS [dm6]	A	AA	9.446e^-5	0.814	INTRON timeout
3R	11809301	3R_11809301_SNP [dm3] 3R_15983579_SNP [dm6]	A	T	9.469e^-5	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	21055545	3L_21055545_SNP [dm3] 3L_21062445_SNP [dm6]	C	T	9.584e^-5	0.814	INTRON siz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2836678	2L_2836678_SNP [dm3] 2L_2836678_SNP [dm6]	C	A	9.652e^-5	0.814	INTRON CG3119
2R	17648180	2R_17648180_SNP [dm3] 2R_21760675_SNP [dm6]	A	T	9.658e^-5	0.814	INTERGENIC
3L	17498401	3L_17498401_SNP [dm3] 3L_17505301_SNP [dm6]	T	A	9.724e^-5	0.814	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19239465	2R_19239465_SNP [dm3] 2R_23351942_SNP [dm6]	T	C	9.731e^-5	0.814	SYNONYMOUS_CODING CG34210	TF binding site BDTNP1_TFBS_prd
X	20633805	X_20633805_SNP [dm3] X_20762778_SNP [dm6]	T	G	9.750e^-5	0.814	UTR_3_PRIME shakB
X	20633816	X_20633816_INS [dm3] X_20762789_INS [dm6]	A	AGGCA	9.750e^-5	0.814	UTR_3_PRIME shakB
2R	16522880	2R_16522880_SNP [dm3] 2R_20635375_SNP [dm6]	A	T	9.845e^-5	0.814	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
3R	25783282	3R_25783282_SNP [dm3] 3R_29957560_SNP [dm6]	A	G	9.861e^-5	0.814	INTRON TkR99D
2R	11755470	2R_11755470_SNP [dm3] 2R_15867965_SNP [dm6]	G	A	9.873e^-5	0.814	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3L	3553822	3L_3553822_SNP [dm3] 3L_3553822_SNP [dm6]	G	C	9.877e^-5	0.814	INTRON Eip63E
X	11551086	X_11551086_INS [dm3] X_11657053_INS [dm6]	C	CC	9.894e^-5	0.814	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14469426	3L_14469426_SNP [dm3] 3L_14476326_SNP [dm6]	A	G	9.908e^-5	0.814	INTRON bbg	TF binding site mE1_TFBS_Trl
3R	26109860	3R_26109860_SNP [dm3] 3R_30284138_SNP [dm6]	A	C	9.911e^-5	0.814	INTRON hdc
X	14845945	X_14845945_SNP [dm3] X_14951912_SNP [dm6]	A	C	1.003e^-4	0.814	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20634202	X_20634202_SNP [dm3] X_20763175_SNP [dm6]	A	C	1.004e^-4	0.814	UTR_3_PRIME shakB
2L	21035423	2L_21035423_SNP [dm3] 2L_21035423_SNP [dm6]	T	C	1.014e^-4	0.814	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19461407	3L_19461407_SNP [dm3] 3L_19468307_SNP [dm6]	C	G	1.027e^-4	0.814	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3R	13976815	3R_13976815_SNP [dm3] 3R_18151093_SNP [dm6]	A	T	1.034e^-4	0.814	INTERGENIC
2L	16734621	2L_16734621_SNP [dm3] 2L_16734621_SNP [dm6]	T	C	1.037e^-4	0.814	SYNONYMOUS_CODING glu DOWNSTREAM CG17904	TF binding site mE1_TFBS_sens
3L	4269972	3L_4269972_SNP [dm3] 3L_4269972_SNP [dm6]	T	C	1.039e^-4	0.814	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20633889	X_20633889_SNP [dm3] X_20762862_SNP [dm6]	A	G	1.054e^-4	0.814	UTR_3_PRIME shakB
X	18815405	X_18815405_SNP [dm3] X_18921372_SNP [dm6]	A	G	1.058e^-4	0.814	INTERGENIC
2L	8421245	2L_8421245_DEL [dm3] 2L_8421245_DEL [dm6]	CGC	C	1.058e^-4	0.814	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18652658	X_18652658_SNP [dm3] X_18758625_SNP [dm6]	A	T	1.061e^-4	0.814	INTERGENIC
3L	1307505	3L_1307505_SNP [dm3] 3L_1307505_SNP [dm6]	T	A	1.063e^-4	0.814	UPSTREAM CG2469 & 1 other INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	13076805	2R_13076805_SNP [dm3] 2R_17189300_SNP [dm6]	T	C	1.064e^-4	0.814	UPSTREAM CR45323 & 1 other INTERGENIC
3L	14435275	3L_14435275_SNP [dm3] 3L_14442175_SNP [dm6]	C	T	1.067e^-4	0.814	INTRON bbg
3L	18760847	3L_18760847_INS [dm3] 3L_18767747_INS [dm6]	A	AATAC	1.076e^-4	0.814	INTRON ftz-f1
3R	9099332	3R_9099332_SNP [dm3] 3R_13273610_SNP [dm6]	G	A	1.079e^-4	0.814	INTERGENIC
3R	16413629	3R_16413629_SNP [dm3] 3R_20587907_SNP [dm6]	A	C	1.082e^-4	0.814	UTR_5_PRIME Sep2 UPSTREAM Srp72 INTRON Sep2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12534460	2R_12534460_SNP [dm3] 2R_16646955_SNP [dm6]	G	C	1.085e^-4	0.814	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11809235	3R_11809235_INS [dm3] 3R_15983513_INS [dm6]	A	AGCTACTCTTTTAAATTCAC...	1.089e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
2L	7048697	2L_7048697_SNP [dm3] 2L_7048697_SNP [dm6]	A	G	1.097e^-4	0.814	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8742805	2L_8742805_SNP [dm3] 2L_8742805_SNP [dm6]	A	C	1.104e^-4	0.814	INTERGENIC
3R	12106379	3R_12106379_DEL [dm3] 3R_16280657_DEL [dm6]	ATTAACGTA	A	1.106e^-4	0.814	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20633601	X_20633601_SNP [dm3] X_20762574_SNP [dm6]	A	G	1.108e^-4	0.814	UTR_3_PRIME shakB
X	20633611	X_20633611_SNP [dm3] X_20762584_SNP [dm6]	T	C	1.108e^-4	0.814	UTR_3_PRIME shakB
2L	2698323	2L_2698323_SNP [dm3] 2L_2698323_SNP [dm6]	A	G	1.108e^-4	0.814	INTRON CG31690
3R	11809237	3R_11809237_SNP [dm3] 3R_15983515_SNP [dm6]	A	T	1.110e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
2L	6424110	2L_6424110_SNP [dm3] 2L_6424110_SNP [dm6]	G	A	1.115e^-4	0.814	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17945283	2R_17945283_SNP [dm3] 2R_22057778_SNP [dm6]	T	C	1.119e^-4	0.814	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9951381	3R_9951381_SNP [dm3] 3R_14125659_SNP [dm6]	C	T	1.121e^-4	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13947052	3L_13947052_SNP [dm3] 3L_13953952_SNP [dm6]	A	T	1.123e^-4	0.814	INTRON CG32137
3R	11809180	3R_11809180_DEL [dm3] 3R_15983458_DEL [dm6]	AA	A	1.124e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	1818744	3L_1818744_SNP [dm3] 3L_1818744_SNP [dm6]	T	C	1.134e^-4	0.814	INTRON GV1
3R	25785539	3R_25785539_SNP [dm3] 3R_29959817_SNP [dm6]	G	A	1.134e^-4	0.814	INTRON TkR99D
X	20633614	X_20633614_SNP [dm3] X_20762587_SNP [dm6]	A	T	1.157e^-4	0.814	UTR_3_PRIME shakB
3L	1307073	3L_1307073_SNP [dm3] 3L_1307073_SNP [dm6]	T	A	1.163e^-4	0.814	SYNONYMOUS_CODING CG2277 UTR_5_PRIME CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21047380	3R_21047380_SNP [dm3] 3R_25221658_SNP [dm6]	C	T	1.178e^-4	0.814	UTR_5_PRIME CG11851 DOWNSTREAM CG31103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	6424111	2L_6424111_SNP [dm3] 2L_6424111_SNP [dm6]	A	T	1.185e^-4	0.814	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10074641	2L_10074641_SNP [dm3] 2L_10074641_SNP [dm6]	T	G	1.191e^-4	0.814	INTRON CG44153
3R	16414354	3R_16414354_SNP [dm3] 3R_20588632_SNP [dm6]	A	T	1.192e^-4	0.814	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16523072	2R_16523072_SNP [dm3] 2R_20635567_SNP [dm6]	G	A	1.193e^-4	0.814	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
3L	17775800	3L_17775800_SNP [dm3] 3L_17782700_SNP [dm6]	C	T	1.195e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	10343906	3L_10343906_SNP [dm3] 3L_10350806_SNP [dm6]	A	G	1.198e^-4	0.814	INTRON CR44327
3L	1252133	3L_1252133_SNP [dm3] 3L_1252133_SNP [dm6]	A	C	1.209e^-4	0.814	UTR_5_PRIME CG9130 & 1 other DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	10230695	3L_10230695_SNP [dm3] 3L_10237595_SNP [dm6]	G	A	1.213e^-4	0.814	DOWNSTREAM CR44542 INTERGENIC
X	11551607	X_11551607_SNP [dm3] X_11657574_SNP [dm6]	T	C	1.213e^-4	0.814	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11809436	3R_11809436_SNP [dm3] 3R_15983714_SNP [dm6]	C	A	1.214e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
X	20438619	X_20438619_SNP [dm3] X_20567592_SNP [dm6]	C	G	1.214e^-4	0.814	DOWNSTREAM RunxB INTERGENIC
3L	2158587	3L_2158587_SNP [dm3] 3L_2158587_SNP [dm6]	C	T	1.214e^-4	0.814	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2534403	3L_2534403_SNP [dm3] 3L_2534403_SNP [dm6]	G	A	1.221e^-4	0.814	INTRON Spn
X	20633617	X_20633617_SNP [dm3] X_20762590_SNP [dm6]	G	T	1.235e^-4	0.814	UTR_3_PRIME shakB
3R	3797824	3R_3797824_SNP [dm3] 3R_7972102_SNP [dm6]	T	C	1.243e^-4	0.814	INTERGENIC
2R	10560116	2R_10560116_SNP [dm3] 2R_14672611_SNP [dm6]	T	C	1.254e^-4	0.814	DOWNSTREAM CG12866 INTRON mspo
3L	8864803	3L_8864803_SNP [dm3] 3L_8871703_SNP [dm6]	T	G	1.265e^-4	0.814	INTRON dally	TF binding site BDTNP1_TFBS_twi
X	5352935	X_5352935_SNP [dm3] X_5458902_SNP [dm6]	G	T	1.275e^-4	0.814	INTRON SPR
3R	21331854	3R_21331854_SNP [dm3] 3R_25506132_SNP [dm6]	A	G	1.281e^-4	0.814	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14351084	2R_14351084_SNP [dm3] 2R_18463579_SNP [dm6]	G	C	1.283e^-4	0.814	INTRON CG30116
3L	17772669	3L_17772669_SNP [dm3] 3L_17779569_SNP [dm6]	G	A	1.283e^-4	0.814	INTERGENIC
3L	10470513	3L_10470513_SNP [dm3] 3L_10477413_SNP [dm6]	A	G	1.283e^-4	0.814	INTERGENIC
3L	15481805	3L_15481805_DEL [dm3] 3L_15488705_DEL [dm6]	TT	T	1.284e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1999192	3L_1999192_SNP [dm3] 3L_1999192_SNP [dm6]	G	A	1.290e^-4	0.814	INTERGENIC
X	7777560	X_7777560_SNP [dm3] X_7883527_SNP [dm6]	G	A	1.290e^-4	0.814	SYNONYMOUS_CODING Ir7f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1739417	3R_1739417_SNP [dm3] 3R_5913695_SNP [dm6]	T	C	1.291e^-4	0.814	INTRON CG34113
2L	9965710	2L_9965710_SNP [dm3] 2L_9965710_SNP [dm6]	G	T	1.291e^-4	0.814	INTRON Dref
X	12431777	X_12431777_SNP [dm3] X_12537744_SNP [dm6]	T	C	1.292e^-4	0.814	INTRON CG43921
3R	14316991	3R_14316991_SNP [dm3] 3R_18491269_SNP [dm6]	C	A	1.305e^-4	0.814	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	20385418	2R_20385418_SNP [dm3] 2R_24497895_SNP [dm6]	A	G	1.306e^-4	0.814	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14573408	2R_14573408_SNP [dm3] 2R_18685903_SNP [dm6]	T	A	1.322e^-4	0.814	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo
3R	11809531	3R_11809531_SNP [dm3] 3R_15983809_SNP [dm6]	C	T	1.323e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	18781149	3L_18781149_SNP [dm3] 3L_18788049_SNP [dm6]	G	T	1.325e^-4	0.814	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9013041	3R_9013041_SNP [dm3] 3R_13187319_SNP [dm6]	G	C	1.338e^-4	0.814	UPSTREAM CG8508 INTERGENIC
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	1.340e^-4	0.814	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	16814274	X_16814274_SNP [dm3] X_16920241_SNP [dm6]	A	T	1.344e^-4	0.814	INTRON CG4928
3L	10344022	3L_10344022_DEL [dm3] 3L_10350922_DEL [dm6]	ATTAAGCCAT	A	1.354e^-4	0.814	INTRON CR44327
2L	16224903	2L_16224903_SNP [dm3] 2L_16224903_SNP [dm6]	G	T	1.358e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17016920	2R_17016920_SNP [dm3] 2R_21129415_SNP [dm6]	G	A	1.358e^-4	0.814	UTR_3_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16287095	2R_16287095_SNP [dm3] 2R_20399590_SNP [dm6]	T	C	1.365e^-4	0.814	INTERGENIC
3R	9951326	3R_9951326_SNP [dm3] 3R_14125604_SNP [dm6]	A	G	1.372e^-4	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25874711	3R_25874711_SNP [dm3] 3R_30048989_SNP [dm6]	G	A	1.375e^-4	0.814	SYNONYMOUS_CODING CG15528 UPSTREAM CR44046 DOWNSTREAM CG7943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18080005	2R_18080005_SNP [dm3] 2R_22192500_SNP [dm6]	T	C	1.376e^-4	0.814	INTRON Swim
2R	18028270	2R_18028270_SNP [dm3] 2R_22140765_SNP [dm6]	C	T	1.377e^-4	0.814	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13252060	3L_13252060_SNP [dm3] 3L_13258960_SNP [dm6]	G	A	1.380e^-4	0.814	INTRON caps
2R	18948594	2R_18948594_SNP [dm3] 2R_23061071_SNP [dm6]	T	C	1.384e^-4	0.814	SYNONYMOUS_CODING CG44252 DOWNSTREAM l_2_06496
X	20633838	X_20633838_SNP [dm3] X_20762811_SNP [dm6]	C	A	1.388e^-4	0.814	UTR_3_PRIME shakB
3L	17768362	3L_17768362_SNP [dm3] 3L_17775262_SNP [dm6]	G	T	1.392e^-4	0.814	INTERGENIC
3R	25786086	3R_25786086_INS [dm3] 3R_29960364_INS [dm6]	A	ATGTCCTACGA...	1.396e^-4	0.814	INTRON TkR99D
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	1.396e^-4	0.814	INTERGENIC	silencer mE1_HDAC_PRE
3R	14362934	3R_14362934_SNP [dm3] 3R_18537212_SNP [dm6]	C	T	1.403e^-4	0.814	INTRON fru
3R	14364781	3R_14364781_SNP [dm3] 3R_18539059_SNP [dm6]	C	T	1.403e^-4	0.814	INTRON fru
3R	14365356	3R_14365356_SNP [dm3] 3R_18539634_SNP [dm6]	A	G	1.404e^-4	0.814	INTRON fru
2R	13112429	2R_13112429_SNP [dm3] 2R_17224924_SNP [dm6]	A	C	1.405e^-4	0.814	INTRON mbl
2R	18940195	2R_18940195_SNP [dm3] 2R_23052672_SNP [dm6]	G	T	1.406e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17832751	3L_17832751_SNP [dm3] 3L_17839651_SNP [dm6]	A	C	1.408e^-4	0.814	UTR_3_PRIME Grd DOWNSTREAM CG5577
2R	7891651	2R_7891651_SNP [dm3] 2R_12004146_SNP [dm6]	A	C	1.412e^-4	0.814	SYNONYMOUS_CODING otk
X	20633919	X_20633919_SNP [dm3] X_20762892_SNP [dm6]	T	C	1.414e^-4	0.814	UTR_3_PRIME shakB
2R	18966764	2R_18966764_SNP [dm3] 2R_23079241_SNP [dm6]	A	T	1.415e^-4	0.814	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	20633606	X_20633606_SNP [dm3] X_20762579_SNP [dm6]	C	T	1.419e^-4	0.814	UTR_3_PRIME shakB
3L	1252352	3L_1252352_SNP [dm3] 3L_1252352_SNP [dm6]	C	T	1.419e^-4	0.814	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	24988844	3R_24988844_SNP [dm3] 3R_29163122_SNP [dm6]	G	A	1.430e^-4	0.814	INTRON CG11897
3R	24988849	3R_24988849_SNP [dm3] 3R_29163127_SNP [dm6]	G	T	1.430e^-4	0.814	INTRON CG11897
3R	4020647	3R_4020647_SNP [dm3] 3R_8194925_SNP [dm6]	A	G	1.432e^-4	0.814	INTERGENIC
2R	18940160	2R_18940160_SNP [dm3] 2R_23052637_SNP [dm6]	A	T	1.437e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18940163	2R_18940163_SNP [dm3] 2R_23052640_SNP [dm6]	T	C	1.437e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18940170	2R_18940170_SNP [dm3] 2R_23052647_SNP [dm6]	G	T	1.437e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18940174	2R_18940174_SNP [dm3] 2R_23052651_SNP [dm6]	A	C	1.437e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9824534	2L_9824534_SNP [dm3] 2L_9824534_SNP [dm6]	G	C	1.438e^-4	0.814	INTRON nAChRalpha6
2R	16976700	2R_16976700_SNP [dm3] 2R_21089195_SNP [dm6]	A	G	1.439e^-4	0.814	DOWNSTREAM Treh INTRON Rbpn-5	TF binding site mE1_TFBS_cad
3L	2156435	3L_2156435_SNP [dm3] 3L_2156435_SNP [dm6]	T	C	1.442e^-4	0.814	INTRON CG15822	TF binding site mE1_TFBS_cad
X	14845769	X_14845769_SNP [dm3] X_14951736_SNP [dm6]	C	G	1.444e^-4	0.814	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25900673	3R_25900673_SNP [dm3] 3R_30074951_SNP [dm6]	G	C	1.446e^-4	0.814	INTRON sima
3R	25780209	3R_25780209_SNP [dm3] 3R_29954487_SNP [dm6]	C	A	1.446e^-4	0.814	INTRON TkR99D
3R	13976798	3R_13976798_SNP [dm3] 3R_18151076_SNP [dm6]	T	A	1.453e^-4	0.814	INTERGENIC
3R	13976806	3R_13976806_SNP [dm3] 3R_18151084_SNP [dm6]	G	A	1.453e^-4	0.814	INTERGENIC
3L	17771322	3L_17771322_SNP [dm3] 3L_17778222_SNP [dm6]	T	C	1.455e^-4	0.814	INTERGENIC
2R	18719074	2R_18719074_SNP [dm3] 2R_22831551_SNP [dm6]	C	G	1.455e^-4	0.814	SYNONYMOUS_CODING CG30272 UPSTREAM CG30265
3R	11809694	3R_11809694_SNP [dm3] 3R_15983972_SNP [dm6]	G	T	1.458e^-4	0.814	DOWNSTREAM Hel89B INTERGENIC
3L	1994736	3L_1994736_SNP [dm3] 3L_1994736_SNP [dm6]	A	G	1.464e^-4	0.814	INTERGENIC
2L	1946706	2L_1946706_SNP [dm3] 2L_1946706_SNP [dm6]	G	A	1.465e^-4	0.814	UTR_5_PRIME CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
X	15620138	X_15620138_SNP [dm3] X_15726105_SNP [dm6]	T	C	1.467e^-4	0.814	SYNONYMOUS_CODING CG8184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8945781	3R_8945781_SNP [dm3] 3R_13120059_SNP [dm6]	G	T	1.478e^-4	0.814	INTRON timeout
X	20633669	X_20633669_SNP [dm3] X_20762642_SNP [dm6]	C	T	1.489e^-4	0.814	UTR_3_PRIME shakB
3R	25076129	3R_25076129_DEL [dm3] 3R_29250407_DEL [dm6]	CAC	C	1.504e^-4	0.814	UTR_5_PRIME SP1029	TF binding site BDTNP1_TFBS_twi
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	1.515e^-4	0.814	INTRON gish
3L	6750592	3L_6750592_SNP [dm3] 3L_6757492_SNP [dm6]	G	A	1.516e^-4	0.814	UPSTREAM CG10103 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12110252	3R_12110252_DEL [dm3] 3R_16284530_DEL [dm6]	GTA	G	1.527e^-4	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20633927	X_20633927_SNP [dm3] X_20762900_SNP [dm6]	G	C	1.527e^-4	0.814	UTR_3_PRIME shakB
X	20151260	X_20151260_SNP [dm3] X_20280233_SNP [dm6]	G	A	1.531e^-4	0.814	INTERGENIC
2L	1946700	2L_1946700_SNP [dm3] 2L_1946700_SNP [dm6]	A	T	1.538e^-4	0.814	UTR_5_PRIME CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
2R	6213142	2R_6213142_SNP [dm3] 2R_10325637_SNP [dm6]	C	A	1.539e^-4	0.814	INTRON CG42732
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	1.540e^-4	0.814	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	20936123	3R_20936123_SNP [dm3] 3R_25110401_SNP [dm6]	G	A	1.543e^-4	0.814	INTRON CG13650
3R	18943886	3R_18943886_SNP [dm3] 3R_23118164_SNP [dm6]	G	T	1.543e^-4	0.814	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	15090244	3R_15090244_SNP [dm3] 3R_19264522_SNP [dm6]	C	G	1.544e^-4	0.814	INTERGENIC
3L	3794041	3L_3794041_SNP [dm3] 3L_3794041_SNP [dm6]	G	T	1.545e^-4	0.814	INTRON CG32264
2L	2042423	2L_2042423_SNP [dm3] 2L_2042423_SNP [dm6]	T	C	1.547e^-4	0.814	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19754473	X_19754473_SNP [dm3] X_19860440_SNP [dm6]	T	A	1.550e^-4	0.814	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8916526	X_8916526_DEL [dm3] X_9022493_DEL [dm6]	ACAATCCCAA	A	1.555e^-4	0.814	INTRON CR43836 & 1 other
2R	10560058	2R_10560058_SNP [dm3] 2R_14672553_SNP [dm6]	C	T	1.561e^-4	0.814	DOWNSTREAM CG12866 INTRON mspo
3L	18776164	3L_18776164_SNP [dm3] 3L_18783064_SNP [dm6]	T	C	1.572e^-4	0.814	INTRON ftz-f1	TF binding site BDTNP1_TFBS_twi
2R	16523028	2R_16523028_SNP [dm3] 2R_20635523_SNP [dm6]	T	A	1.572e^-4	0.814	NON_SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
3L	6006332	3L_6006332_SNP [dm3] 3L_6013232_SNP [dm6]	G	A	1.576e^-4	0.814	INTRON PVRAP
2L	4376064	2L_4376064_SNP [dm3] 2L_4376064_SNP [dm6]	T	A	1.578e^-4	0.814	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20633474	X_20633474_SNP [dm3] X_20762447_SNP [dm6]	G	A	1.587e^-4	0.814	UTR_3_PRIME shakB
3L	9639777	3L_9639777_DEL [dm3] 3L_9646677_DEL [dm6]	AG	A	1.589e^-4	0.814	INTRON fry & 1 other
X	20634083	X_20634083_SNP [dm3] X_20763056_SNP [dm6]	C	G	1.593e^-4	0.814	UTR_3_PRIME shakB
3R	9951276	3R_9951276_SNP [dm3] 3R_14125554_SNP [dm6]	T	A	1.595e^-4	0.814	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7049396	2L_7049396_SNP [dm3] 2L_7049396_SNP [dm6]	T	G	1.603e^-4	0.814	START_GAINED milt UTR_5_PRIME milt UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26301529	3R_26301529_SNP [dm3] 3R_30475807_SNP [dm6]	A	G	1.607e^-4	0.814	UPSTREAM spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15165047	3R_15165047_SNP [dm3] 3R_19339325_SNP [dm6]	T	C	1.607e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	16160754	2R_16160754_SNP [dm3] 2R_20273249_SNP [dm6]	C	G	1.611e^-4	0.814	INTRON CG10444	TF binding site mE1_TFBS_cad
3L	17770783	3L_17770783_SNP [dm3] 3L_17777683_SNP [dm6]	T	C	1.611e^-4	0.814	INTERGENIC
2R	14351065	2R_14351065_SNP [dm3] 2R_18463560_SNP [dm6]	C	A	1.615e^-4	0.814	INTRON CG30116
3L	3554363	3L_3554363_SNP [dm3] 3L_3554363_SNP [dm6]	T	G	1.617e^-4	0.814	INTRON Eip63E
X	2562007	X_2562007_SNP [dm3] X_2667974_SNP [dm6]	G	C	1.618e^-4	0.814	INTRON sgg
2L	9821685	2L_9821685_SNP [dm3] 2L_9821685_SNP [dm6]	C	T	1.621e^-4	0.814	INTRON nAChRalpha6
2L	4333914	2L_4333914_SNP [dm3] 2L_4333914_SNP [dm6]	C	T	1.622e^-4	0.814	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12110363	3R_12110363_INS [dm3] 3R_16284641_INS [dm6]	G	GGTTTACAAC	1.627e^-4	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4627886	3L_4627886_SNP [dm3] 3L_4627886_SNP [dm6]	A	G	1.628e^-4	0.814	SYNONYMOUS_CODING Rpd3 UPSTREAM CR45438	TF binding site BDTNP1_TFBS_dl
3L	14634844	3L_14634844_SNP [dm3] 3L_14641744_SNP [dm6]	C	G	1.630e^-4	0.814	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	2004298	3L_2004298_SNP [dm3] 3L_2004298_SNP [dm6]	T	A	1.636e^-4	0.814	DOWNSTREAM CG42841 INTRON CG42841
3L	1613117	3L_1613117_SNP [dm3] 3L_1613117_SNP [dm6]	C	A	1.640e^-4	0.814	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
2R	13992683	2R_13992683_SNP [dm3] 2R_18105178_SNP [dm6]	A	G	1.648e^-4	0.814	SYNONYMOUS_CODING CG5756
X	5507374	X_5507374_SNP [dm3] X_5613341_SNP [dm6]	A	G	1.648e^-4	0.814	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2R	16092375	2R_16092375_SNP [dm3] 2R_20204870_SNP [dm6]	G	T	1.652e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2736190	2R_2736190_SNP [dm3] 2R_6848685_SNP [dm6]	G	C	1.653e^-4	0.814	INTERGENIC
3R	9088287	3R_9088287_SNP [dm3] 3R_13262565_SNP [dm6]	G	A	1.654e^-4	0.814	DOWNSTREAM Ravus & 1 other INTERGENIC
3L	16834920	3L_16834920_SNP [dm3] 3L_16841820_SNP [dm6]	T	A	1.659e^-4	0.814	UPSTREAM TSG101 INTERGENIC
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	1.662e^-4	0.814	INTRON caps
3R	9003225	3R_9003225_SNP [dm3] 3R_13177503_SNP [dm6]	T	C	1.662e^-4	0.814	INTERGENIC
3R	20989208	3R_20989208_SNP [dm3] 3R_25163486_SNP [dm6]	C	T	1.663e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16092376	2R_16092376_SNP [dm3] 2R_20204871_SNP [dm6]	A	T	1.666e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20170340	2R_20170340_SNP [dm3] 2R_24282817_SNP [dm6]	T	G	1.667e^-4	0.814	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	18028261	2R_18028261_SNP [dm3] 2R_22140756_SNP [dm6]	C	T	1.670e^-4	0.814	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5050624	2L_5050624_SNP [dm3] 2L_5050624_SNP [dm6]	G	T	1.674e^-4	0.814	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2R	5229636	2R_5229636_SNP [dm3] 2R_9342131_SNP [dm6]	A	G	1.674e^-4	0.814	INTRON CG13954 & 1 other
3L	15277416	3L_15277416_SNP [dm3] 3L_15284316_SNP [dm6]	C	G	1.676e^-4	0.814	INTERGENIC
3R	9043455	3R_9043455_INS [dm3] 3R_13217733_INS [dm6]	T	TGAT	1.677e^-4	0.814	INTERGENIC
2R	15732416	2R_15732416_SNP [dm3] 2R_19844911_SNP [dm6]	A	G	1.677e^-4	0.814	INTERGENIC
3R	11306833	3R_11306833_SNP [dm3] 3R_15481111_SNP [dm6]	C	T	1.679e^-4	0.814	UPSTREAM CG14870 INTERGENIC
X	20631308	X_20631308_SNP [dm3] X_20760281_SNP [dm6]	G	A	1.685e^-4	0.814	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14210613	2R_14210613_SNP [dm3] 2R_18323108_SNP [dm6]	G	A	1.688e^-4	0.814	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	1305906	3L_1305906_SNP [dm3] 3L_1305906_SNP [dm6]	T	C	1.688e^-4	0.814	SYNONYMOUS_CODING CG2277	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16238207	2L_16238207_SNP [dm3] 2L_16238207_SNP [dm6]	G	A	1.691e^-4	0.814	SYNONYMOUS_CODING CG42817
3R	14291026	3R_14291026_SNP [dm3] 3R_18465304_SNP [dm6]	T	A	1.693e^-4	0.814	INTRON fru
2L	12045659	2L_12045659_INS [dm3] 2L_12045659_INS [dm6]	T	TTCTCT	1.697e^-4	0.814	UTR_3_PRIME CG6770 UPSTREAM CG6785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13273051	3R_13273051_SNP [dm3] 3R_17447329_SNP [dm6]	T	C	1.698e^-4	0.814	DOWNSTREAM CG5873 INTRON Eh
3R	18944005	3R_18944005_SNP [dm3] 3R_23118283_SNP [dm6]	T	C	1.699e^-4	0.814	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	7889610	3L_7889610_SNP [dm3] 3L_7896510_SNP [dm6]	G	T	1.702e^-4	0.814	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3R	12110409	3R_12110409_SNP [dm3] 3R_16284687_SNP [dm6]	C	G	1.705e^-4	0.814	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1999145	3L_1999145_SNP [dm3] 3L_1999145_SNP [dm6]	G	A	1.709e^-4	0.814	INTERGENIC
3R	9093502	3R_9093502_SNP [dm3] 3R_13267780_SNP [dm6]	C	G	1.709e^-4	0.814	INTRON Su_var_3-7	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16736488	2L_16736488_SNP [dm3] 2L_16736488_SNP [dm6]	G	A	1.713e^-4	0.814	SYNONYMOUS_CODING glu
3R	16414320	3R_16414320_SNP [dm3] 3R_20588598_SNP [dm6]	A	T	1.734e^-4	0.814	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9381915	3L_9381915_SNP [dm3] 3L_9388815_SNP [dm6]	G	A	1.734e^-4	0.814	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	5879166	3R_5879166_SNP [dm3] 3R_10053444_SNP [dm6]	A	G	1.735e^-4	0.814	NON_SYNONYMOUS_CODING Npc2e UPSTREAM Fancl EXON CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17945374	2R_17945374_SNP [dm3] 2R_22057869_SNP [dm6]	C	T	1.744e^-4	0.814	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17278083	2R_17278083_SNP [dm3] 2R_21390578_SNP [dm6]	A	G	1.748e^-4	0.814	SPLICE_SITE_REGION Acox57D-d INTRON Acox57D-d	TF binding site mE1_TFBS_cad
3L	2005291	3L_2005291_SNP [dm3] 3L_2005291_SNP [dm6]	G	T	1.749e^-4	0.814	UTR_3_PRIME CG42841
2R	10815586	2R_10815586_INS [dm3] 2R_14928081_INS [dm6]	A	AA	1.763e^-4	0.814	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	2562008	X_2562008_SNP [dm3] X_2667975_SNP [dm6]	A	C	1.765e^-4	0.814	INTRON sgg
3L	884553	3L_884553_SNP [dm3] 3L_884553_SNP [dm6]	C	G	1.784e^-4	0.814	INTRON CG32479
3R	9000240	3R_9000240_SNP [dm3] 3R_13174518_SNP [dm6]	G	T	1.788e^-4	0.814	INTERGENIC
3R	17289542	3R_17289542_SNP [dm3] 3R_21463820_SNP [dm6]	C	G	1.791e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	20633038	X_20633038_SNP [dm3] X_20762011_SNP [dm6]	G	A	1.798e^-4	0.814	UTR_3_PRIME shakB
3L	6737195	3L_6737195_SNP [dm3] 3L_6744095_SNP [dm6]	A	T	1.801e^-4	0.814	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	15632544	3R_15632544_SNP [dm3] 3R_19806822_SNP [dm6]	A	G	1.803e^-4	0.814	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7408314	3R_7408314_SNP [dm3] 3R_11582592_SNP [dm6]	C	T	1.803e^-4	0.814	UPSTREAM wkd INTRON wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7220024	3L_7220024_SNP [dm3] 3L_7226924_SNP [dm6]	A	T	1.807e^-4	0.814	INTERGENIC
2L	16736495	2L_16736495_SNP [dm3] 2L_16736495_SNP [dm6]	T	C	1.809e^-4	0.814	SYNONYMOUS_CODING glu
3L	1997950	3L_1997950_SNP [dm3] 3L_1997950_SNP [dm6]	G	A	1.809e^-4	0.814	INTERGENIC
3L	1252949	3L_1252949_SNP [dm3] 3L_1252949_SNP [dm6]	G	A	1.809e^-4	0.814	SYNONYMOUS_CODING CG9130 START_GAINED CG9133 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20633739	X_20633739_SNP [dm3] X_20762712_SNP [dm6]	G	A	1.821e^-4	0.814	UTR_3_PRIME shakB
3L	15625242	3L_15625242_SNP [dm3] 3L_15632142_SNP [dm6]	T	C	1.822e^-4	0.814	SYNONYMOUS_CODING comm3 INTRON comm3
X	20631546	X_20631546_SNP [dm3] X_20760519_SNP [dm6]	A	G	1.829e^-4	0.814	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	13559358	2R_13559358_SNP [dm3] 2R_17671853_SNP [dm6]	C	T	1.831e^-4	0.814	DOWNSTREAM CR44404 & 1 other INTRON P32	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17354838	2R_17354838_SNP [dm3] 2R_21467333_SNP [dm6]	A	G	1.832e^-4	0.814	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19458051	2R_19458051_SNP [dm3] 2R_23570528_SNP [dm6]	C	G	1.841e^-4	0.814	INTRON apt	TF binding site BDTNP1_TFBS_dl
2R	5096748	2R_5096748_SNP [dm3] 2R_9209243_SNP [dm6]	C	T	1.843e^-4	0.814	UTR_3_PRIME VhaAC45
X	16624304	X_16624304_SNP [dm3] X_16730271_SNP [dm6]	G	T	1.845e^-4	0.814	UPSTREAM TwdlX INTRON CG9634
3R	16414325	3R_16414325_SNP [dm3] 3R_20588603_SNP [dm6]	T	A	1.851e^-4	0.814	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16566909	2R_16566909_SNP [dm3] 2R_20679404_SNP [dm6]	T	C	1.853e^-4	0.814	INTERGENIC
2R	16908611	2R_16908611_SNP [dm3] 2R_21021106_SNP [dm6]	A	T	1.858e^-4	0.814	SYNONYMOUS_CODING RIC-3
X	20633602	X_20633602_SNP [dm3] X_20762575_SNP [dm6]	C	T	1.860e^-4	0.814	UTR_3_PRIME shakB
2L	5562109	2L_5562109_SNP [dm3] 2L_5562109_SNP [dm6]	T	C	1.860e^-4	0.814	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	19585779	2R_19585779_SNP [dm3] 2R_23698256_SNP [dm6]	C	T	1.861e^-4	0.814	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1306890	3L_1306890_SNP [dm3] 3L_1306890_SNP [dm6]	A	C	1.864e^-4	0.814	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3947267	2R_3947267_SNP [dm3] 2R_8059762_SNP [dm6]	A	C	1.871e^-4	0.814	INTRON CG12769	TF binding site BDTNP1_TFBS_dl
3L	15748921	3L_15748921_SNP [dm3] 3L_15755821_SNP [dm6]	G	C	1.873e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	1.873e^-4	0.814	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2R	7217728	2R_7217728_SNP [dm3] 2R_11330223_SNP [dm6]	G	A	1.873e^-4	0.814	INTRON sha	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3794802	3L_3794802_SNP [dm3] 3L_3794802_SNP [dm6]	G	C	1.878e^-4	0.814	UTR_5_PRIME CG32264 INTRON CG32264
X	17300643	X_17300643_SNP [dm3] X_17406610_SNP [dm6]	A	G	1.879e^-4	0.814	INTERGENIC
2L	7418985	2L_7418985_DEL [dm3] 2L_7418985_DEL [dm6]	TAAATATATT	T	1.879e^-4	0.814	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21756088	3L_21756088_SNP [dm3] 3L_21762988_SNP [dm6]	A	G	1.882e^-4	0.814	INTRON Syn1
3R	8677268	3R_8677268_SNP [dm3] 3R_12851546_SNP [dm6]	G	A	1.883e^-4	0.814	UPSTREAM CR44234 INTERGENIC
X	12432068	X_12432068_SNP [dm3] X_12538035_SNP [dm6]	T	A	1.885e^-4	0.814	INTRON CG43921
2L	12477948	2L_12477948_SNP [dm3] 2L_12477948_SNP [dm6]	T	G	1.890e^-4	0.814	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13284956	2R_13284956_SNP [dm3] 2R_17397451_SNP [dm6]	G	A	1.905e^-4	0.819	INTRON Sip1
2R	2618297	2R_2618297_DEL [dm3] 2R_6730792_DEL [dm6]	TCCTTGTCGT	T	1.916e^-4	0.819	CODON_DELETION l_2_01289 INTRON l_2_01289
2R	18956817	2R_18956817_SNP [dm3] 2R_23069294_SNP [dm6]	C	T	1.918e^-4	0.819	UPSTREAM l_2_k09913 INTRON l_2_k09913
3R	8934057	3R_8934057_SNP [dm3] 3R_13108335_SNP [dm6]	G	A	1.919e^-4	0.819	INTRON timeout
X	5086462	X_5086462_SNP [dm3] X_5192429_SNP [dm6]	T	C	1.935e^-4	0.819	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20631535	X_20631535_SNP [dm3] X_20760508_SNP [dm6]	T	G	1.944e^-4	0.819	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8894036	2R_8894036_SNP [dm3] 2R_13006531_SNP [dm6]	C	G	1.950e^-4	0.819	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25776843	3R_25776843_SNP [dm3] 3R_29951121_SNP [dm6]	A	C	1.956e^-4	0.819	UTR_3_PRIME TkR99D
3L	13308209	3L_13308209_INS [dm3] 3L_13315109_INS [dm6]	G	GCCAG	1.956e^-4	0.819	INTERGENIC
3L	1254188	3L_1254188_SNP [dm3] 3L_1254188_SNP [dm6]	G	C	1.959e^-4	0.819	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
2R	6530971	2R_6530971_SNP [dm3] 2R_10643466_SNP [dm6]	G	A	1.969e^-4	0.819	SYNONYMOUS_CODING Git	TF binding site mE1_TFBS_HSA
X	20633806	X_20633806_SNP [dm3] X_20762779_SNP [dm6]	C	T	1.976e^-4	0.819	UTR_3_PRIME shakB
2L	15916363	2L_15916363_SNP [dm3] 2L_15916363_SNP [dm6]	A	C	1.976e^-4	0.819	UPSTREAM CG13244 INTRON beat-Ib
2R	10021495	2R_10021495_SNP [dm3] 2R_14133990_SNP [dm6]	G	T	1.979e^-4	0.819	INTRON Prosap
3R	16414358	3R_16414358_SNP [dm3] 3R_20588636_SNP [dm6]	T	A	1.985e^-4	0.819	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3794042	3L_3794042_SNP [dm3] 3L_3794042_SNP [dm6]	A	T	1.989e^-4	0.819	INTRON CG32264
3R	13976804	3R_13976804_SNP [dm3] 3R_18151082_SNP [dm6]	A	T	1.993e^-4	0.819	INTERGENIC
3R	26300401	3R_26300401_SNP [dm3] 3R_30474679_SNP [dm6]	C	T	1.995e^-4	0.819	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18949851	3L_18949851_SNP [dm3] 3L_18956751_SNP [dm6]	C	T	2.005e^-4	0.819	INTERGENIC
3L	10543087	3L_10543087_SNP [dm3] 3L_10549987_SNP [dm6]	C	T	2.006e^-4	0.819	INTRON A2bp1
3R	929874	3R_929874_SNP [dm3] 3R_5104152_SNP [dm6]	T	A	2.008e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16113704	2R_16113704_SNP [dm3] 2R_20226199_SNP [dm6]	A	T	2.010e^-4	0.819	INTERGENIC
2R	8370448	2R_8370448_SNP [dm3] 2R_12482943_SNP [dm6]	G	T	2.011e^-4	0.819	INTRON Dh44-R2
3L	5419757	3L_5419757_SNP [dm3] 3L_5426657_SNP [dm6]	G	C	2.012e^-4	0.819	INTRON CG34391	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1945258	X_1945258_SNP [dm3] X_2051225_SNP [dm6]	G	T	2.016e^-4	0.819	INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10245843	3L_10245843_SNP [dm3] 3L_10252743_SNP [dm6]	T	A	2.019e^-4	0.819	INTERGENIC
2R	12665763	2R_12665763_SNP [dm3] 2R_16778258_SNP [dm6]	C	T	2.023e^-4	0.819	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6530495	2L_6530495_SNP [dm3] 2L_6530495_SNP [dm6]	C	G	2.025e^-4	0.819	START_GAINED eya UTR_5_PRIME eya INTRON eya	TF binding site BDTNP1_TFBS_twi
2R	17237138	2R_17237138_SNP [dm3] 2R_21349633_SNP [dm6]	G	A	2.032e^-4	0.819	INTRON CG17974
3L	3794038	3L_3794038_SNP [dm3] 3L_3794038_SNP [dm6]	T	A	2.035e^-4	0.819	INTRON CG32264
X	17286136	X_17286136_SNP [dm3] X_17392103_SNP [dm6]	C	T	2.035e^-4	0.819	INTERGENIC
3L	3812511	3L_3812511_SNP [dm3] 3L_3812511_SNP [dm6]	T	C	2.050e^-4	0.819	SYNONYMOUS_CODING CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2005293	3L_2005293_SNP [dm3] 3L_2005293_SNP [dm6]	A	G	2.079e^-4	0.819	UTR_3_PRIME CG42841
X	16054789	X_16054789_SNP [dm3] X_16160756_SNP [dm6]	T	G	2.081e^-4	0.819	INTERGENIC
3R	14316988	3R_14316988_SNP [dm3] 3R_18491266_SNP [dm6]	G	T	2.088e^-4	0.819	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	13252009	3L_13252009_SNP [dm3] 3L_13258909_SNP [dm6]	A	C	2.095e^-4	0.819	INTRON caps
X	21123401	X_21123401_DEL [dm3] X_21252374_DEL [dm6]	TGCAAT	T	2.097e^-4	0.819	INTRON CG32521
3L	10470335	3L_10470335_SNP [dm3] 3L_10477235_SNP [dm6]	T	C	2.097e^-4	0.819	INTERGENIC
3L	2803751	3L_2803751_SNP [dm3] 3L_2803751_SNP [dm6]	T	G	2.103e^-4	0.819	INTRON CG43444
3L	21607389	3L_21607389_SNP [dm3] 3L_21614289_SNP [dm6]	G	A	2.110e^-4	0.819	NON_SYNONYMOUS_CODING S1P DOWNSTREAM TfAP-2
3L	9667834	3L_9667834_SNP [dm3] 3L_9674734_SNP [dm6]	T	C	2.118e^-4	0.819	INTRON fry
3R	12110307	3R_12110307_SNP [dm3] 3R_16284585_SNP [dm6]	C	A	2.125e^-4	0.819	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10344014	3L_10344014_SNP [dm3] 3L_10350914_SNP [dm6]	T	G	2.130e^-4	0.819	INTRON CR44327
2R	12131933	2R_12131933_SNP [dm3] 2R_16244428_SNP [dm6]	C	A	2.130e^-4	0.819	INTRON CngA	TF binding site mE1_TFBS_inv
3R	20727509	3R_20727509_SNP [dm3] 3R_24901787_SNP [dm6]	T	C	2.132e^-4	0.819	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20653748	X_20653748_SNP [dm3] X_20782721_SNP [dm6]	G	A	2.133e^-4	0.819	INTRON shakB
3L	17611819	3L_17611819_SNP [dm3] 3L_17618719_SNP [dm6]	T	A	2.140e^-4	0.819	START_GAINED Eip74EF UTR_5_PRIME Eip74EF
3L	20812769	3L_20812769_SNP [dm3] 3L_20819669_SNP [dm6]	C	A	2.149e^-4	0.819	UPSTREAM Pka-R1 INTRON Pka-R1
2R	20034575	2R_20034575_SNP [dm3] 2R_24147052_SNP [dm6]	C	T	2.154e^-4	0.819	UTR_5_PRIME Dat INTRON Dat
X	9418982	X_9418982_SNP [dm3] X_9524949_SNP [dm6]	A	G	2.162e^-4	0.819	INTRON CG32700
X	20633460	X_20633460_SNP [dm3] X_20762433_SNP [dm6]	G	A	2.167e^-4	0.819	UTR_3_PRIME shakB
3L	18286831	3L_18286831_SNP [dm3] 3L_18293731_SNP [dm6]	G	A	2.175e^-4	0.819	SYNONYMOUS_CODING CG5103 UPSTREAM CR43306	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20633851	X_20633851_SNP [dm3] X_20762824_SNP [dm6]	C	A	2.176e^-4	0.819	UTR_3_PRIME shakB
2L	7418984	2L_7418984_SNP [dm3] 2L_7418984_SNP [dm6]	T	A	2.176e^-4	0.819	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20632969	X_20632969_SNP [dm3] X_20761942_SNP [dm6]	T	A	2.182e^-4	0.819	UTR_3_PRIME shakB UPSTREAM CR43838
2L	20711339	2L_20711339_SNP [dm3] 2L_20711339_SNP [dm6]	A	G	2.184e^-4	0.819	DOWNSTREAM CR44187 INTRON Hr38 EXON CR44188
3L	18760853	3L_18760853_SNP [dm3] 3L_18767753_SNP [dm6]	A	T	2.188e^-4	0.819	INTRON ftz-f1
2R	5334976	2R_5334976_SNP [dm3] 2R_9447471_SNP [dm6]	T	C	2.192e^-4	0.819	INTRON Camta	TF binding site mE1_TFBS_HSA
X	21337002	X_21337002_SNP [dm3] X_21465975_SNP [dm6]	C	G	2.196e^-4	0.819	INTERGENIC
3R	21045619	3R_21045619_SNP [dm3] 3R_25219897_SNP [dm6]	G	C	2.200e^-4	0.819	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
2R	4155870	2R_4155870_SNP [dm3] 2R_8268365_SNP [dm6]	G	C	2.204e^-4	0.819	SPLICE_SITE_REGION CG30371 INTRON CG30371
2R	17354848	2R_17354848_SNP [dm3] 2R_21467343_SNP [dm6]	A	G	2.206e^-4	0.819	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10620466	3L_10620466_SNP [dm3] 3L_10627366_SNP [dm6]	A	G	2.213e^-4	0.819	SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
3L	1818765	3L_1818765_SNP [dm3] 3L_1818765_SNP [dm6]	G	A	2.216e^-4	0.819	INTRON GV1
3L	14439971	3L_14439971_SNP [dm3] 3L_14446871_SNP [dm6]	C	T	2.219e^-4	0.819	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	4118865	3L_4118865_SNP [dm3] 3L_4118865_SNP [dm6]	T	C	2.224e^-4	0.819	INTRON Chd64
2L	9773004	2L_9773004_SNP [dm3] 2L_9773004_SNP [dm6]	A	G	2.230e^-4	0.819	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
X	1656567	X_1656567_SNP [dm3] X_1762534_SNP [dm6]	G	T	2.231e^-4	0.819	INTERGENIC
3L	22933505	3L_22933505_SNP [dm3] 3L_22940405_SNP [dm6]	A	G	2.235e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17915690	3R_17915690_SNP [dm3] 3R_22089968_SNP [dm6]	A	G	2.237e^-4	0.819	INTRON CG5778
2L	8420769	2L_8420769_SNP [dm3] 2L_8420769_SNP [dm6]	A	G	2.238e^-4	0.819	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4855059	3R_4855059_SNP [dm3] 3R_9029337_SNP [dm6]	G	T	2.246e^-4	0.819	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15277418	3L_15277418_SNP [dm3] 3L_15284318_SNP [dm6]	C	G	2.248e^-4	0.819	INTERGENIC
2R	18079932	2R_18079932_SNP [dm3] 2R_22192427_SNP [dm6]	A	G	2.249e^-4	0.819	INTRON Swim
X	14846272	X_14846272_DEL [dm3] X_14952239_DEL [dm6]	TT	T	2.252e^-4	0.819	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8318832	X_8318832_SNP [dm3] X_8424799_SNP [dm6]	G	A	2.258e^-4	0.819	NON_SYNONYMOUS_CODING Trf2 START_GAINED Trf2 UTR_5_PRIME Trf2	TF binding site mE1_TFBS_sens
3L	1028953	3L_1028953_SNP [dm3] 3L_1028953_SNP [dm6]	A	C	2.261e^-4	0.819	INTRON trio
3R	12109322	3R_12109322_SNP [dm3] 3R_16283600_SNP [dm6]	G	A	2.264e^-4	0.819	INTRON gish
2R	12794031	2R_12794031_SNP [dm3] 2R_16906526_SNP [dm6]	T	G	2.270e^-4	0.819	INTERGENIC
3L	17773829	3L_17773829_SNP [dm3] 3L_17780729_SNP [dm6]	A	T	2.270e^-4	0.819	INTERGENIC
3L	1996943	3L_1996943_SNP [dm3] 3L_1996943_SNP [dm6]	C	T	2.270e^-4	0.819	INTERGENIC
3R	14291020	3R_14291020_DEL [dm3] 3R_18465298_DEL [dm6]	TTG	T	2.271e^-4	0.819	INTRON fru
2R	15005556	2R_15005556_SNP [dm3] 2R_19118051_SNP [dm6]	G	T	2.274e^-4	0.819	INTRON 5-HT1A	TF binding site mE1_TFBS_cad
2R	17272735	2R_17272735_SNP [dm3] 2R_21385230_SNP [dm6]	G	C	2.277e^-4	0.819	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2R	17272742	2R_17272742_SNP [dm3] 2R_21385237_SNP [dm6]	G	T	2.277e^-4	0.819	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2R	19239492	2R_19239492_DEL [dm3] 2R_23351969_DEL [dm6]	GGACTAATTGATACGTCTTT...	G	2.279e^-4	0.819	UTR_3_PRIME CG34210	TF binding site BDTNP1_TFBS_prd
3L	1306962	3L_1306962_SNP [dm3] 3L_1306962_SNP [dm6]	T	C	2.289e^-4	0.819	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15024951	3R_15024951_SNP [dm3] 3R_19199229_SNP [dm6]	C	T	2.295e^-4	0.819	INTRON CG31475
3L	5397589	3L_5397589_SNP [dm3] 3L_5404489_SNP [dm6]	T	G	2.299e^-4	0.819	INTERGENIC
2L	7056012	2L_7056012_SNP [dm3] 2L_7056012_SNP [dm6]	A	T	2.306e^-4	0.819	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5446205	3L_5446205_SNP [dm3] 3L_5453105_SNP [dm6]	G	C	2.307e^-4	0.819	INTERGENIC
2R	13975265	2R_13975265_SNP [dm3] 2R_18087760_SNP [dm6]	A	C	2.325e^-4	0.819	INTRON CG34386
3R	9011822	3R_9011822_SNP [dm3] 3R_13186100_SNP [dm6]	G	T	2.329e^-4	0.819	SYNONYMOUS_CODING CG8508
2R	13284955	2R_13284955_SNP [dm3] 2R_17397450_SNP [dm6]	T	G	2.339e^-4	0.819	INTRON Sip1
3R	4855046	3R_4855046_SNP [dm3] 3R_9029324_SNP [dm6]	C	T	2.339e^-4	0.819	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13076703	2R_13076703_SNP [dm3] 2R_17189198_SNP [dm6]	T	C	2.340e^-4	0.819	UPSTREAM CR45323 & 1 other INTERGENIC
2L	7048953	2L_7048953_SNP [dm3] 2L_7048953_SNP [dm6]	G	T	2.343e^-4	0.819	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3794060	3L_3794060_SNP [dm3] 3L_3794060_SNP [dm6]	A	C	2.349e^-4	0.819	INTRON CG32264
2R	15138588	2R_15138588_SNP [dm3] 2R_19251083_SNP [dm6]	T	C	2.350e^-4	0.819	NON_SYNONYMOUS_CODING CG33454 DOWNSTREAM wbl
X	6114438	X_6114438_SNP [dm3] X_6220405_SNP [dm6]	T	C	2.352e^-4	0.819	UTR_5_PRIME Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	20633525	X_20633525_SNP [dm3] X_20762498_SNP [dm6]	T	C	2.356e^-4	0.819	UTR_3_PRIME shakB
2R	11800814	2R_11800814_INS [dm3] 2R_15913309_INS [dm6]	A	AA	2.366e^-4	0.819	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	20174900	2R_20174900_SNP [dm3] 2R_24287377_SNP [dm6]	T	C	2.366e^-4	0.819	INTRON nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11002798	3L_11002798_SNP [dm3] 3L_11009698_SNP [dm6]	C	T	2.366e^-4	0.819	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12120457	2R_12120457_SNP [dm3] 2R_16232952_SNP [dm6]	G	T	2.368e^-4	0.819	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12110366	3R_12110366_SNP [dm3] 3R_16284644_SNP [dm6]	G	A	2.374e^-4	0.819	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16143759	3L_16143759_SNP [dm3] 3L_16150659_SNP [dm6]	G	A	2.378e^-4	0.819	INTRON CG5151	TF binding site mE1_TFBS_cad
3L	11343256	3L_11343256_SNP [dm3] 3L_11350156_SNP [dm6]	C	G	2.387e^-4	0.819	UPSTREAM CR45251 INTERGENIC
2R	11854286	2R_11854286_SNP [dm3] 2R_15966781_SNP [dm6]	G	A	2.390e^-4	0.819	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	884555	3L_884555_SNP [dm3] 3L_884555_SNP [dm6]	G	A	2.393e^-4	0.819	INTRON CG32479
2R	18940165	2R_18940165_SNP [dm3] 2R_23052642_SNP [dm6]	A	T	2.396e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14019970	3R_14019970_SNP [dm3] 3R_18194248_SNP [dm6]	T	A	2.404e^-4	0.819	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
3L	5284100	3L_5284100_SNP [dm3] 3L_5291000_SNP [dm6]	C	A	2.427e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9086786	3R_9086786_SNP [dm3] 3R_13261064_SNP [dm6]	G	A	2.428e^-4	0.819	INTRON CG11686
3R	21042470	3R_21042470_SNP [dm3] 3R_25216748_SNP [dm6]	G	A	2.432e^-4	0.819	INTRON CG31106
2R	8125249	2R_8125249_SNP [dm3] 2R_12237744_SNP [dm6]	C	T	2.433e^-4	0.819	INTERGENIC
3R	6265708	3R_6265708_SNP [dm3] 3R_10439986_SNP [dm6]	T	A	2.439e^-4	0.819	INTERGENIC
3L	12829303	3L_12829303_SNP [dm3] 3L_12836203_SNP [dm6]	A	T	2.446e^-4	0.819	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14360417	3R_14360417_DEL [dm3] 3R_18534695_DEL [dm6]	TT	T	2.448e^-4	0.819	INTRON fru
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	2.448e^-4	0.819	INTRON bbg
3R	8943535	3R_8943535_SNP [dm3] 3R_13117813_SNP [dm6]	C	T	2.450e^-4	0.819	INTRON timeout
X	5267866	X_5267866_SNP [dm3] X_5373833_SNP [dm6]	G	A	2.453e^-4	0.819	INTRON SK
3L	11151392	3L_11151392_SNP [dm3] 3L_11158292_SNP [dm6]	C	T	2.454e^-4	0.819	INTRON CG32082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4118899	3L_4118899_SNP [dm3] 3L_4118899_SNP [dm6]	C	T	2.457e^-4	0.819	INTRON Chd64
3L	2945767	3L_2945767_SNP [dm3] 3L_2945767_SNP [dm6]	T	A	2.460e^-4	0.819	UTR_3_PRIME Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14845765	X_14845765_SNP [dm3] X_14951732_SNP [dm6]	C	T	2.465e^-4	0.819	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13256817	3L_13256817_SNP [dm3] 3L_13263717_SNP [dm6]	G	A	2.472e^-4	0.819	INTRON caps	enhancer mE1_CBP_Enhancers
3R	20989278	3R_20989278_SNP [dm3] 3R_25163556_SNP [dm6]	T	C	2.473e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16590381	2R_16590381_SNP [dm3] 2R_20702876_SNP [dm6]	G	A	2.475e^-4	0.819	INTRON dpr
X	20634417	X_20634417_SNP [dm3] X_20763390_SNP [dm6]	C	G	2.483e^-4	0.819	UTR_3_PRIME shakB
2R	13992564	2R_13992564_SNP [dm3] 2R_18105059_SNP [dm6]	C	T	2.483e^-4	0.819	INTRON CG5756
3R	9037530	3R_9037530_SNP [dm3] 3R_13211808_SNP [dm6]	C	G	2.485e^-4	0.819	INTRON CG8483
3L	4271081	3L_4271081_SNP [dm3] 3L_4271081_SNP [dm6]	T	C	2.488e^-4	0.819	INTRON CG1273
3L	21409054	3L_21409054_SNP [dm3] 3L_21415954_SNP [dm6]	A	G	2.494e^-4	0.819	INTRON rgn
2R	13877902	2R_13877902_SNP [dm3] 2R_17990397_SNP [dm6]	G	A	2.494e^-4	0.819	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17772677	3L_17772677_SNP [dm3] 3L_17779577_SNP [dm6]	C	T	2.502e^-4	0.819	INTERGENIC
3R	26001410	3R_26001410_SNP [dm3] 3R_30175688_SNP [dm6]	T	A	2.509e^-4	0.819	DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3L	7997261	3L_7997261_SNP [dm3] 3L_8004161_SNP [dm6]	A	G	2.513e^-4	0.819	INTRON nmo
3R	14291017	3R_14291017_SNP [dm3] 3R_18465295_SNP [dm6]	G	A	2.515e^-4	0.819	INTRON fru
3R	14302387	3R_14302387_SNP [dm3] 3R_18476665_SNP [dm6]	G	A	2.517e^-4	0.819	INTRON fru
2R	18956820	2R_18956820_SNP [dm3] 2R_23069297_SNP [dm6]	T	G	2.517e^-4	0.819	UPSTREAM l_2_k09913 INTRON l_2_k09913
2R	8632063	2R_8632063_SNP [dm3] 2R_12744558_SNP [dm6]	T	C	2.521e^-4	0.819	INTRON CG42663	TF binding site mE1_TFBS_chinmo
3R	9012451	3R_9012451_SNP [dm3] 3R_13186729_SNP [dm6]	C	T	2.526e^-4	0.819	UPSTREAM CG8508 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9090391	3R_9090391_SNP [dm3] 3R_13264669_SNP [dm6]	C	A	2.546e^-4	0.824	NON_SYNONYMOUS_CODING Su_var_3-7 UPSTREAM Ravus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18957682	2R_18957682_SNP [dm3] 2R_23070159_SNP [dm6]	C	G	2.549e^-4	0.824	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18322330	3R_18322330_SNP [dm3] 3R_22496608_SNP [dm6]	G	T	2.557e^-4	0.825	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1996345	3L_1996345_SNP [dm3] 3L_1996345_SNP [dm6]	C	T	2.566e^-4	0.826	INTERGENIC
2L	16944735	2L_16944735_SNP [dm3] 2L_16944735_SNP [dm6]	A	T	2.577e^-4	0.826	EXON CR43053
3L	1137713	3L_1137713_SNP [dm3] 3L_1137713_SNP [dm6]	C	T	2.579e^-4	0.826	INTERGENIC
3R	4785414	3R_4785414_SNP [dm3] 3R_8959692_SNP [dm6]	T	A	2.580e^-4	0.826	INTRON CG11966
3L	7726956	3L_7726956_SNP [dm3] 3L_7733856_SNP [dm6]	A	T	2.584e^-4	0.826	INTRON CG32373 & 1 other
2R	16393874	2R_16393874_SNP [dm3] 2R_20506369_SNP [dm6]	G	T	2.592e^-4	0.828	DOWNSTREAM Obp57a EXON CR44644 & 1 other
2R	13897276	2R_13897276_SNP [dm3] 2R_18009771_SNP [dm6]	A	G	2.602e^-4	0.828	INTERGENIC
3L	18760880	3L_18760880_SNP [dm3] 3L_18767780_SNP [dm6]	C	T	2.603e^-4	0.828	INTRON ftz-f1
3R	25783184	3R_25783184_SNP [dm3] 3R_29957462_SNP [dm6]	G	A	2.620e^-4	0.828	INTRON TkR99D
2L	7049913	2L_7049913_INS [dm3] 2L_7049913_INS [dm6]	G	GTCG	2.630e^-4	0.828	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5319781	2L_5319781_SNP [dm3] 2L_5319781_SNP [dm6]	G	A	2.640e^-4	0.828	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21736450	3L_21736450_SNP [dm3] 3L_21743350_SNP [dm6]	A	G	2.641e^-4	0.828	UTR_3_PRIME CG14565 DOWNSTREAM CG14572	TF binding site mE1_TFBS_chinmo
3L	1613430	3L_1613430_SNP [dm3] 3L_1613430_SNP [dm6]	C	T	2.647e^-4	0.828	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
X	22028639	X_22028639_SNP [dm3] X_22626803_SNP [dm6]	T	C	2.651e^-4	0.828	INTRON Cda4
3L	7137376	3L_7137376_SNP [dm3] 3L_7144276_SNP [dm6]	G	A	2.653e^-4	0.828	SYNONYMOUS_CODING corn UTR_3_PRIME corn DOWNSTREAM corn
3L	7467809	3L_7467809_SNP [dm3] 3L_7474709_SNP [dm6]	C	T	2.658e^-4	0.828	UPSTREAM CG43292 INTERGENIC
2R	2732417	2R_2732417_SNP [dm3] 2R_6844912_SNP [dm6]	T	A	2.660e^-4	0.828	INTERGENIC
2R	12156661	2R_12156661_SNP [dm3] 2R_16269156_SNP [dm6]	C	A	2.660e^-4	0.828	SYNONYMOUS_CODING Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6869360	X_6869360_SNP [dm3] X_6975327_SNP [dm6]	G	A	2.667e^-4	0.828	INTRON ogre
3L	3720037	3L_3720037_SNP [dm3] 3L_3720037_SNP [dm6]	T	C	2.669e^-4	0.828	INTRON CG32264
3R	12106887	3R_12106887_SNP [dm3] 3R_16281165_SNP [dm6]	C	A	2.676e^-4	0.828	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26998247	3R_26998247_SNP [dm3] 3R_31172525_SNP [dm6]	G	A	2.677e^-4	0.828	INTRON Gycbeta100B
3L	23020549	3L_23020549_SNP [dm3] 3L_23027449_SNP [dm6]	C	T	2.680e^-4	0.828	INTRON nrm
3R	16414349	3R_16414349_SNP [dm3] 3R_20588627_SNP [dm6]	T	A	2.680e^-4	0.828	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9158828	3R_9158828_SNP [dm3] 3R_13333106_SNP [dm6]	G	A	2.689e^-4	0.828	INTRON PK2-R2
2R	9015023	2R_9015023_SNP [dm3] 2R_13127518_SNP [dm6]	G	C	2.696e^-4	0.828	DOWNSTREAM CG3955 INTERGENIC
3L	22439405	3L_22439405_SNP [dm3] 3L_22446305_SNP [dm6]	T	G	2.698e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15107602	2L_15107602_SNP [dm3] 2L_15107602_SNP [dm6]	C	T	2.699e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2872439	3L_2872439_SNP [dm3] 3L_2872439_SNP [dm6]	C	T	2.702e^-4	0.828	UTR_5_PRIME CG43444
3R	26302752	3R_26302752_INS [dm3] 3R_30477030_INS [dm6]	A	ACCAGCA	2.713e^-4	0.828	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6869390	X_6869390_SNP [dm3] X_6975357_SNP [dm6]	T	G	2.716e^-4	0.828	INTRON ogre
3R	26109922	3R_26109922_SNP [dm3] 3R_30284200_SNP [dm6]	A	T	2.725e^-4	0.828	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	17772359	3L_17772359_SNP [dm3] 3L_17779259_SNP [dm6]	T	G	2.733e^-4	0.828	INTERGENIC
X	4111604	X_4111604_SNP [dm3] X_4217571_SNP [dm6]	G	A	2.734e^-4	0.828	UPSTREAM CG15570 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18956839	2R_18956839_SNP [dm3] 2R_23069316_SNP [dm6]	C	T	2.741e^-4	0.828	UPSTREAM l_2_k09913 INTRON l_2_k09913
X	20631826	X_20631826_SNP [dm3] X_20760799_SNP [dm6]	G	T	2.757e^-4	0.828	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	6899483	3R_6899483_SNP [dm3] 3R_11073761_SNP [dm6]	C	A	2.757e^-4	0.828	INTERGENIC
3R	14363058	3R_14363058_SNP [dm3] 3R_18537336_SNP [dm6]	A	C	2.761e^-4	0.828	INTRON fru
2R	18733125	2R_18733125_SNP [dm3] 2R_22845602_SNP [dm6]	A	G	2.765e^-4	0.828	UPSTREAM CG3649 INTERGENIC
2L	7419044	2L_7419044_SNP [dm3] 2L_7419044_SNP [dm6]	A	G	2.771e^-4	0.828	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10905619	2L_10905619_SNP [dm3] 2L_10905619_SNP [dm6]	A	G	2.773e^-4	0.828	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	13252007	3L_13252007_SNP [dm3] 3L_13258907_SNP [dm6]	C	T	2.774e^-4	0.828	INTRON caps
2R	14685878	2R_14685878_SNP [dm3] 2R_18798373_SNP [dm6]	G	A	2.775e^-4	0.828	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo
X	12403993	X_12403993_SNP [dm3] X_12509960_SNP [dm6]	C	T	2.777e^-4	0.828	INTRON CG2556
2R	16978030	2R_16978030_SNP [dm3] 2R_21090525_SNP [dm6]	A	G	2.779e^-4	0.828	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10329790	3L_10329790_SNP [dm3] 3L_10336690_SNP [dm6]	T	C	2.785e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3L	6562621	3L_6562621_SNP [dm3] 3L_6569521_SNP [dm6]	A	T	2.790e^-4	0.828	INTRON CG18769 & 1 other
3L	5643974	3L_5643974_SNP [dm3] 3L_5650874_SNP [dm6]	G	A	2.799e^-4	0.828	UTR_3_PRIME Blimp-1
2R	16287079	2R_16287079_SNP [dm3] 2R_20399574_SNP [dm6]	T	G	2.804e^-4	0.828	INTERGENIC
X	20634543	X_20634543_SNP [dm3] X_20763516_SNP [dm6]	G	T	2.810e^-4	0.828	UTR_3_PRIME shakB
3L	3794806	3L_3794806_SNP [dm3] 3L_3794806_SNP [dm6]	T	G	2.827e^-4	0.828	UTR_5_PRIME CG32264 INTRON CG32264
3L	4860909	3L_4860909_SNP [dm3] 3L_4860909_SNP [dm6]	C	G	2.832e^-4	0.828	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	25763455	3R_25763455_SNP [dm3] 3R_29937733_SNP [dm6]	G	A	2.839e^-4	0.828	SYNONYMOUS_CODING CG15523
3L	6774174	3L_6774174_DEL [dm3] 3L_6781074_DEL [dm6]	AG	A	2.856e^-4	0.828	INTERGENIC
3R	18944006	3R_18944006_SNP [dm3] 3R_23118284_SNP [dm6]	C	G	2.858e^-4	0.828	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	18815512	2R_18815512_SNP [dm3] 2R_22927989_SNP [dm6]	T	G	2.860e^-4	0.828	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
3L	21413510	3L_21413510_SNP [dm3] 3L_21420410_SNP [dm6]	G	T	2.864e^-4	0.828	UTR_3_PRIME barc INTRON rgn
X	3998108	X_3998108_SNP [dm3] X_4104075_SNP [dm6]	C	T	2.868e^-4	0.828	SYNONYMOUS_CODING Xpac UPSTREAM brn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	8894044	2R_8894044_SNP [dm3] 2R_13006539_SNP [dm6]	A	G	2.871e^-4	0.828	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5094129	X_5094129_SNP [dm3] X_5200096_SNP [dm6]	G	A	2.875e^-4	0.828	INTRON rg & 1 other
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	2.879e^-4	0.828	INTERGENIC
3L	603210	3L_603210_DEL [dm3] 3L_603210_DEL [dm6]	ATTTATTTATTTATT...	G	2.881e^-4	0.828	INTRON CG13893
3L	18292050	3L_18292050_SNP [dm3] 3L_18298950_SNP [dm6]	A	T	2.881e^-4	0.828	SYNONYMOUS_CODING CG13700
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	2.883e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22257605	3R_22257605_SNP [dm3] 3R_26431883_SNP [dm6]	C	T	2.888e^-4	0.828	INTERGENIC
3L	9116012	3L_9116012_SNP [dm3] 3L_9122912_SNP [dm6]	A	C	2.892e^-4	0.828	INTRON bol	TF binding site mE1_TFBS_Ubx
3L	11087462	3L_11087462_SNP [dm3] 3L_11094362_SNP [dm6]	G	A	2.894e^-4	0.828	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
2L	8592775	2L_8592775_SNP [dm3] 2L_8592775_SNP [dm6]	A	C	2.898e^-4	0.828	INTRON Sema-1a & 1 other	TF binding site mE1_TFBS_HSA
2R	8828649	2R_8828649_SNP [dm3] 2R_12941144_SNP [dm6]	G	A	2.899e^-4	0.828	SYNONYMOUS_CODING Mdr49 DOWNSTREAM Sans	TF binding site mE1_TFBS_chinmo
2R	16566920	2R_16566920_SNP [dm3] 2R_20679415_SNP [dm6]	G	A	2.901e^-4	0.828	INTERGENIC
3R	2682554	3R_2682554_SNP [dm3] 3R_6856832_SNP [dm6]	A	C	2.902e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	18954712	2R_18954712_SNP [dm3] 2R_23067189_SNP [dm6]	A	G	2.905e^-4	0.828	UPSTREAM l_2_k09913 DOWNSTREAM PPO3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10895775	3L_10895775_SNP [dm3] 3L_10902675_SNP [dm6]	T	C	2.907e^-4	0.828	INTERGENIC
2L	11577677	2L_11577677_SNP [dm3] 2L_11577677_SNP [dm6]	A	C	2.913e^-4	0.828	INTERGENIC
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	2.918e^-4	0.828	INTRON gish	TF binding site BDTNP1_TFBS_dl
3R	13976803	3R_13976803_SNP [dm3] 3R_18151081_SNP [dm6]	A	C	2.921e^-4	0.828	INTERGENIC
2R	10014242	2R_10014242_SNP [dm3] 2R_14126737_SNP [dm6]	C	T	2.930e^-4	0.828	INTRON Prosap
3L	1996808	3L_1996808_SNP [dm3] 3L_1996808_SNP [dm6]	G	A	2.946e^-4	0.828	INTERGENIC
X	20631483	X_20631483_SNP [dm3] X_20760456_SNP [dm6]	T	A	2.953e^-4	0.828	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	6871482	X_6871482_SNP [dm3] X_6977449_SNP [dm6]	T	C	2.961e^-4	0.828	UTR_5_PRIME ogre
2R	12665678	2R_12665678_SNP [dm3] 2R_16778173_SNP [dm6]	A	G	2.961e^-4	0.828	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15424780	3L_15424780_SNP [dm3] 3L_15431680_SNP [dm6]	G	A	2.971e^-4	0.828	INTERGENIC
3R	8982510	3R_8982510_SNP [dm3] 3R_13156788_SNP [dm6]	C	G	2.974e^-4	0.828	INTRON timeout	TF binding site BDTNP1_TFBS_twi
2L	6424016	2L_6424016_SNP [dm3] 2L_6424016_SNP [dm6]	A	T	2.976e^-4	0.828	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15481754	3L_15481754_SNP [dm3] 3L_15488654_SNP [dm6]	G	A	2.978e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11129033	2L_11129033_SNP [dm3] 2L_11129033_SNP [dm6]	A	G	2.979e^-4	0.828	SYNONYMOUS_CODING RfC38 UTR_3_PRIME Nup160 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad
3L	2478087	3L_2478087_SNP [dm3] 3L_2478087_SNP [dm6]	T	G	2.979e^-4	0.828	INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16260801	3L_16260801_SNP [dm3] 3L_16267701_SNP [dm6]	C	T	2.985e^-4	0.828	SYNONYMOUS_CODING CG4950	TF binding site mE1_TFBS_sens
3R	25758108	3R_25758108_SNP [dm3] 3R_29932386_SNP [dm6]	G	C	2.987e^-4	0.828	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12238565	3R_12238565_SNP [dm3] 3R_16412843_SNP [dm6]	T	G	2.989e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	6137743	3L_6137743_SNP [dm3] 3L_6144643_SNP [dm6]	A	G	3.003e^-4	0.828	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3L	5422488	3L_5422488_SNP [dm3] 3L_5429388_SNP [dm6]	T	A	3.005e^-4	0.828	UTR_5_PRIME CG34391
X	21173221	X_21173221_SNP [dm3] X_21302194_SNP [dm6]	C	G	3.019e^-4	0.828	INTRON CG1718
X	13176970	X_13176970_SNP [dm3] X_13282937_SNP [dm6]	T	A	3.021e^-4	0.828	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20633937	X_20633937_SNP [dm3] X_20762910_SNP [dm6]	C	A	3.021e^-4	0.828	UTR_3_PRIME shakB
X	20631548	X_20631548_SNP [dm3] X_20760521_SNP [dm6]	A	T	3.023e^-4	0.828	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14187473	2R_14187473_SNP [dm3] 2R_18299968_SNP [dm6]	C	A	3.029e^-4	0.828	SYNONYMOUS_CODING CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9097825	3R_9097825_DEL [dm3] 3R_13272103_DEL [dm6]	TCAA	T	3.041e^-4	0.828	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	9097833	3R_9097833_DEL [dm3] 3R_13272111_DEL [dm6]	TAATTTATTCAAATTTTGAA...	T	3.041e^-4	0.828	UPSTREAM CG8449 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	12665675	2R_12665675_SNP [dm3] 2R_16778170_SNP [dm6]	T	A	3.043e^-4	0.828	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11002799	3L_11002799_SNP [dm3] 3L_11009699_SNP [dm6]	A	T	3.054e^-4	0.828	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8998907	2L_8998907_SNP [dm3] 2L_8998907_SNP [dm6]	G	A	3.057e^-4	0.828	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17611491	3L_17611491_SNP [dm3] 3L_17618391_SNP [dm6]	C	T	3.080e^-4	0.828	INTRON Eip74EF
3L	3796338	3L_3796338_DEL [dm3] 3L_3796338_DEL [dm6]	TTT	C	3.081e^-4	0.828	INTRON CG32264
X	20680902	X_20680902_SNP [dm3] X_20809875_SNP [dm6]	C	T	3.087e^-4	0.828	INTRON shakB
3R	21331670	3R_21331670_SNP [dm3] 3R_25505948_SNP [dm6]	T	C	3.090e^-4	0.828	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC
3R	14286847	3R_14286847_SNP [dm3] 3R_18461125_SNP [dm6]	G	T	3.094e^-4	0.828	INTRON fru
X	5364576	X_5364576_DEL [dm3] X_5470543_DEL [dm6]	CATATATGTATC...	C	3.095e^-4	0.828	INTRON SPR
2R	12636345	2R_12636345_SNP [dm3] 2R_16748840_SNP [dm6]	C	A	3.108e^-4	0.828	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
2R	18939289	2R_18939289_SNP [dm3] 2R_23051766_SNP [dm6]	T	A	3.108e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	1996691	3L_1996691_SNP [dm3] 3L_1996691_SNP [dm6]	G	C	3.121e^-4	0.828	INTERGENIC
X	17766817	X_17766817_SNP [dm3] X_17872784_SNP [dm6]	A	C	3.122e^-4	0.828	INTRON mnb
2L	7079247	2L_7079247_SNP [dm3] 2L_7079247_SNP [dm6]	C	A	3.129e^-4	0.828	INTRON Pvf2 EXON CR44611
X	14845956	X_14845956_SNP [dm3] X_14951923_SNP [dm6]	C	T	3.131e^-4	0.828	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12471136	3R_12471136_SNP [dm3] 3R_16645414_SNP [dm6]	G	A	3.132e^-4	0.828	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326	TF binding site mE1_TFBS_sens
3R	14292149	3R_14292149_SNP [dm3] 3R_18466427_SNP [dm6]	C	A	3.136e^-4	0.828	INTRON fru
X	12777002	X_12777002_INS [dm3] X_12882969_INS [dm6]	A	AGTA	3.137e^-4	0.828	INTRON Pde9
3L	14081117	3L_14081117_SNP [dm3] 3L_14088017_SNP [dm6]	T	A	3.138e^-4	0.828	INTERGENIC
3R	9951347	3R_9951347_SNP [dm3] 3R_14125625_SNP [dm6]	A	T	3.153e^-4	0.828	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17083890	2R_17083890_SNP [dm3] 2R_21196385_SNP [dm6]	G	A	3.159e^-4	0.828	INTRON Lapsyn
2L	7295741	2L_7295741_SNP [dm3] 2L_7295741_SNP [dm6]	C	T	3.161e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10950267	2R_10950267_SNP [dm3] 2R_15062762_SNP [dm6]	C	G	3.163e^-4	0.828	INTERGENIC
3R	18944031	3R_18944031_DEL [dm3] 3R_23118309_DEL [dm6]	AA	A	3.177e^-4	0.828	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	5409876	3L_5409876_SNP [dm3] 3L_5416776_SNP [dm6]	A	C	3.180e^-4	0.828	INTERGENIC
3R	8943527	3R_8943527_SNP [dm3] 3R_13117805_SNP [dm6]	C	T	3.181e^-4	0.828	INTRON timeout
X	20634302	X_20634302_SNP [dm3] X_20763275_SNP [dm6]	A	G	3.183e^-4	0.828	UTR_3_PRIME shakB
3R	11832113	3R_11832113_SNP [dm3] 3R_16006391_SNP [dm6]	C	T	3.188e^-4	0.828	INTRON CR42839	TF binding site BDTNP1_TFBS_twi
X	14845770	X_14845770_INS [dm3] X_14951737_INS [dm6]	G	GT	3.194e^-4	0.828	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13855414	2R_13855414_SNP [dm3] 2R_17967909_SNP [dm6]	G	A	3.201e^-4	0.828	INTERGENIC
2R	11565683	2R_11565683_SNP [dm3] 2R_15678178_SNP [dm6]	G	A	3.209e^-4	0.828	SYNONYMOUS_CODING CG8207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14762742	2R_14762742_SNP [dm3] 2R_18875237_SNP [dm6]	A	C	3.210e^-4	0.828	INTERGENIC
3L	4270090	3L_4270090_SNP [dm3] 3L_4270090_SNP [dm6]	A	T	3.211e^-4	0.828	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12667214	2R_12667214_SNP [dm3] 2R_16779709_SNP [dm6]	C	T	3.246e^-4	0.828	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	20997637	3R_20997637_SNP [dm3] 3R_25171915_SNP [dm6]	T	C	3.253e^-4	0.828	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15024955	3R_15024955_SNP [dm3] 3R_19199233_SNP [dm6]	T	C	3.258e^-4	0.828	INTRON CG31475
X	14846006	X_14846006_SNP [dm3] X_14951973_SNP [dm6]	T	A	3.260e^-4	0.828	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1999980	3L_1999980_SNP [dm3] 3L_1999980_SNP [dm6]	A	C	3.275e^-4	0.828	INTERGENIC
3R	9090619	3R_9090619_SNP [dm3] 3R_13264897_SNP [dm6]	C	A	3.281e^-4	0.828	NON_SYNONYMOUS_CODING Su_var_3-7 UPSTREAM Ravus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	9860946	3L_9860946_SNP [dm3] 3L_9867846_SNP [dm6]	C	T	3.282e^-4	0.828	INTRON CG8108	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1318090	3L_1318090_SNP [dm3] 3L_1318090_SNP [dm6]	G	A	3.288e^-4	0.828	UTR_3_PRIME CG9153 UPSTREAM Myo61F
3R	25113661	3R_25113661_SNP [dm3] 3R_29287939_SNP [dm6]	T	C	3.299e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10167286	2L_10167286_SNP [dm3] 2L_10167286_SNP [dm6]	G	T	3.301e^-4	0.828	INTRON CG44153
3R	23145485	3R_23145485_SNP [dm3] 3R_27319763_SNP [dm6]	T	A	3.305e^-4	0.828	SYNONYMOUS_CODING CG3339 DOWNSTREAM CR44287	TF binding site mE1_TFBS_chinmo
3R	25141488	3R_25141488_SNP [dm3] 3R_29315766_SNP [dm6]	G	T	3.307e^-4	0.828	UTR_3_PRIME Cnx99A DOWNSTREAM Cnx99A
2R	18474439	2R_18474439_SNP [dm3] 2R_22586934_SNP [dm6]	C	T	3.317e^-4	0.828	INTRON dnr1
3R	21065601	3R_21065601_SNP [dm3] 3R_25239879_SNP [dm6]	A	T	3.323e^-4	0.828	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	3.328e^-4	0.828	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	11033255	3L_11033255_SNP [dm3] 3L_11040155_SNP [dm6]	G	A	3.331e^-4	0.828	UPSTREAM CG43693 INTRON CG43693
X	20631442	X_20631442_SNP [dm3] X_20760415_SNP [dm6]	A	T	3.344e^-4	0.828	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	5624355	2L_5624355_SNP [dm3] 2L_5624355_SNP [dm6]	T	A	3.348e^-4	0.828	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21267882	3R_21267882_SNP [dm3] 3R_25442160_SNP [dm6]	G	T	3.350e^-4	0.828	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	14352278	3R_14352278_SNP [dm3] 3R_18526556_SNP [dm6]	A	G	3.353e^-4	0.828	INTRON fru
3R	21330294	3R_21330294_SNP [dm3] 3R_25504572_SNP [dm6]	T	A	3.354e^-4	0.828	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6974392	3L_6974392_SNP [dm3] 3L_6981292_SNP [dm6]	A	C	3.354e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3794048	3L_3794048_SNP [dm3] 3L_3794048_SNP [dm6]	T	A	3.370e^-4	0.828	INTRON CG32264
2R	20180908	2R_20180908_SNP [dm3] 2R_24293385_SNP [dm6]	T	G	3.370e^-4	0.828	UPSTREAM CG3394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5686074	3L_5686074_SNP [dm3] 3L_5692974_SNP [dm6]	T	G	3.371e^-4	0.828	INTRON sif
3L	5687431	3L_5687431_SNP [dm3] 3L_5694331_SNP [dm6]	G	A	3.371e^-4	0.828	INTRON sif
3R	14354389	3R_14354389_SNP [dm3] 3R_18528667_SNP [dm6]	G	A	3.374e^-4	0.828	INTRON fru
3R	11809471	3R_11809471_SNP [dm3] 3R_15983749_SNP [dm6]	C	G	3.378e^-4	0.828	DOWNSTREAM Hel89B INTERGENIC
3L	5685408	3L_5685408_SNP [dm3] 3L_5692308_SNP [dm6]	G	T	3.386e^-4	0.828	INTRON sif
3R	9013020	3R_9013020_SNP [dm3] 3R_13187298_SNP [dm6]	G	T	3.387e^-4	0.828	UPSTREAM CG8508 INTERGENIC
3L	18949849	3L_18949849_SNP [dm3] 3L_18956749_SNP [dm6]	C	A	3.398e^-4	0.828	INTERGENIC
2R	14573501	2R_14573501_SNP [dm3] 2R_18685996_SNP [dm6]	A	G	3.402e^-4	0.828	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo
3L	7890563	3L_7890563_SNP [dm3] 3L_7897463_SNP [dm6]	C	T	3.407e^-4	0.828	SYNONYMOUS_CODING pbl
3L	22372150	3L_22372150_SNP [dm3] 3L_22379050_SNP [dm6]	G	A	3.415e^-4	0.828	INTRON Ten-m
3L	6830998	3L_6830998_SNP [dm3] 3L_6837898_SNP [dm6]	A	G	3.416e^-4	0.828	INTERGENIC
X	13177015	X_13177015_SNP [dm3] X_13282982_SNP [dm6]	T	A	3.418e^-4	0.828	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16808001	3L_16808001_INS [dm3] 3L_16814901_INS [dm6]	G	GG	3.418e^-4	0.828	INTRON nudC & 1 other
2R	18959498	2R_18959498_SNP [dm3] 2R_23071975_SNP [dm6]	T	A	3.424e^-4	0.828	UPSTREAM tRNA:CR30202 DOWNSTREAM tRNA:CR30201 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14330375	3R_14330375_SNP [dm3] 3R_18504653_SNP [dm6]	T	A	3.428e^-4	0.828	UPSTREAM fru INTRON fru
X	13905845	X_13905845_SNP [dm3] X_14011812_SNP [dm6]	T	C	3.428e^-4	0.828	INTERGENIC
3R	15277868	3R_15277868_SNP [dm3] 3R_19452146_SNP [dm6]	C	A	3.433e^-4	0.828	INTRON CG31221
2R	18862770	2R_18862770_SNP [dm3] 2R_22975247_SNP [dm6]	A	C	3.442e^-4	0.828	INTERGENIC
3R	23213378	3R_23213378_SNP [dm3] 3R_27387656_SNP [dm6]	C	T	3.445e^-4	0.828	INTRON side
3L	21787173	3L_21787173_SNP [dm3] 3L_21794073_SNP [dm6]	C	A	3.452e^-4	0.828	INTERGENIC
3L	11672191	3L_11672191_SNP [dm3] 3L_11679091_SNP [dm6]	T	C	3.456e^-4	0.828	INTRON CG32085
2R	16523038	2R_16523038_SNP [dm3] 2R_20635533_SNP [dm6]	C	T	3.461e^-4	0.828	NON_SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
2R	19048469	2R_19048469_SNP [dm3] 2R_23160946_SNP [dm6]	A	G	3.463e^-4	0.828	SPLICE_SITE_REGION CG9899 INTRON CG9899
2R	19048470	2R_19048470_SNP [dm3] 2R_23160947_SNP [dm6]	G	A	3.463e^-4	0.828	SPLICE_SITE_REGION CG9899 INTRON CG9899
3L	4338292	3L_4338292_SNP [dm3] 3L_4338292_SNP [dm6]	T	A	3.469e^-4	0.828	INTRON Cip4	TF binding site mE1_TFBS_inv
2R	8370601	2R_8370601_SNP [dm3] 2R_12483096_SNP [dm6]	G	A	3.476e^-4	0.828	INTRON Dh44-R2
3L	16886831	3L_16886831_SNP [dm3] 3L_16893731_SNP [dm6]	G	A	3.476e^-4	0.828	INTRON Lmpt
X	6869702	X_6869702_SNP [dm3] X_6975669_SNP [dm6]	C	G	3.477e^-4	0.828	INTRON ogre
3L	23060821	3L_23060821_SNP [dm3] 3L_23067721_SNP [dm6]	A	C	3.480e^-4	0.828	INTERGENIC	transposable element FlyBase
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	3.481e^-4	0.828	SPLICE_SITE_REGION CG33298 INTRON CG33298
3L	1446888	3L_1446888_INS [dm3] 3L_1446888_INS [dm6]	A	AAGCA	3.483e^-4	0.828	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5198076	2R_5198076_SNP [dm3] 2R_9310571_SNP [dm6]	C	T	3.493e^-4	0.828	UTR_3_PRIME CG13954 & 1 other
2L	6220932	2L_6220932_SNP [dm3] 2L_6220932_SNP [dm6]	T	C	3.503e^-4	0.828	INTERGENIC
3L	18290740	3L_18290740_SNP [dm3] 3L_18297640_SNP [dm6]	G	A	3.505e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17287387	X_17287387_SNP [dm3] X_17393354_SNP [dm6]	A	T	3.506e^-4	0.828	INTERGENIC
3R	2682635	3R_2682635_SNP [dm3] 3R_6856913_SNP [dm6]	G	A	3.509e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13080788	2L_13080788_SNP [dm3] 2L_13080788_SNP [dm6]	G	A	3.510e^-4	0.828	INTERGENIC
3R	4755041	3R_4755041_SNP [dm3] 3R_8929319_SNP [dm6]	C	G	3.514e^-4	0.828	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	16414222	3R_16414222_SNP [dm3] 3R_20588500_SNP [dm6]	A	T	3.522e^-4	0.828	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16414230	3R_16414230_SNP [dm3] 3R_20588508_SNP [dm6]	A	C	3.522e^-4	0.828	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7419649	2L_7419649_SNP [dm3] 2L_7419649_SNP [dm6]	G	A	3.526e^-4	0.828	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	8605770	3R_8605770_INS [dm3] 3R_12780048_INS [dm6]	G	GCGTGGCAAGG...	3.536e^-4	0.828	INTRON beat-Vc
2R	19021131	2R_19021131_SNP [dm3] 2R_23133608_SNP [dm6]	C	G	3.540e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	11618440	X_11618440_SNP [dm3] X_11724407_SNP [dm6]	T	C	3.540e^-4	0.828	SYNONYMOUS_CODING CG15221 DOWNSTREAM inaF-B & 2 others
3L	11002881	3L_11002881_SNP [dm3] 3L_11009781_SNP [dm6]	A	C	3.541e^-4	0.828	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	21065585	3R_21065585_SNP [dm3] 3R_25239863_SNP [dm6]	A	C	3.543e^-4	0.828	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
2L	7717124	2L_7717124_SNP [dm3] 2L_7717124_SNP [dm6]	C	T	3.545e^-4	0.828	SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
3R	15277948	3R_15277948_SNP [dm3] 3R_19452226_SNP [dm6]	C	A	3.546e^-4	0.828	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	8168783	2L_8168783_SNP [dm3] 2L_8168783_SNP [dm6]	T	C	3.550e^-4	0.828	INTRON Piezo
2L	16736597	2L_16736597_SNP [dm3] 2L_16736597_SNP [dm6]	C	A	3.550e^-4	0.828	NON_SYNONYMOUS_CODING glu
3R	4196574	3R_4196574_SNP [dm3] 3R_8370852_SNP [dm6]	C	T	3.562e^-4	0.828	INTRON CG45263
2R	17240574	2R_17240574_SNP [dm3] 2R_21353069_SNP [dm6]	A	G	3.563e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4278815	3R_4278815_SNP [dm3] 3R_8453093_SNP [dm6]	T	G	3.563e^-4	0.828	INTRON CG45263
2L	8421928	2L_8421928_SNP [dm3] 2L_8421928_SNP [dm6]	C	T	3.565e^-4	0.828	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8421936	2L_8421936_SNP [dm3] 2L_8421936_SNP [dm6]	A	T	3.565e^-4	0.828	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25980500	3R_25980500_SNP [dm3] 3R_30154778_SNP [dm6]	C	T	3.566e^-4	0.828	SYNONYMOUS_CODING CG11498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12665681	2R_12665681_SNP [dm3] 2R_16778176_SNP [dm6]	A	G	3.576e^-4	0.828	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8104256	X_8104256_SNP [dm3] X_8210223_SNP [dm6]	C	G	3.576e^-4	0.828	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8104275	X_8104275_SNP [dm3] X_8210242_SNP [dm6]	G	A	3.576e^-4	0.828	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2002301	3L_2002301_SNP [dm3] 3L_2002301_SNP [dm6]	C	G	3.576e^-4	0.828	DOWNSTREAM CG42841 INTERGENIC
X	20634134	X_20634134_SNP [dm3] X_20763107_SNP [dm6]	T	C	3.578e^-4	0.828	UTR_3_PRIME shakB
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	3.578e^-4	0.828	SYNONYMOUS_CODING Cad74A
3R	23893375	3R_23893375_SNP [dm3] 3R_28067653_SNP [dm6]	G	A	3.580e^-4	0.828	INTRON CG34362
3R	20990051	3R_20990051_SNP [dm3] 3R_25164329_SNP [dm6]	T	A	3.581e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20848954	X_20848954_SNP [dm3] X_20977927_SNP [dm6]	T	A	3.581e^-4	0.828	UPSTREAM CG44426 INTERGENIC
2L	970810	2L_970810_SNP [dm3] 2L_970810_SNP [dm6]	C	T	3.586e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18737057	2R_18737057_SNP [dm3] 2R_22849534_SNP [dm6]	T	A	3.588e^-4	0.828	INTRON CG13531	TF binding site mE1_TFBS_cad
3R	26979803	3R_26979803_SNP [dm3] 3R_31154081_SNP [dm6]	T	C	3.594e^-4	0.828	SYNONYMOUS_CODING Gycbeta100B
3L	10266234	3L_10266234_SNP [dm3] 3L_10273134_SNP [dm6]	G	A	3.597e^-4	0.828	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	20114241	2R_20114241_SNP [dm3] 2R_24226718_SNP [dm6]	A	G	3.601e^-4	0.828	INTRON CG30419
2R	20034574	2R_20034574_SNP [dm3] 2R_24147051_SNP [dm6]	C	T	3.609e^-4	0.828	UTR_5_PRIME Dat INTRON Dat
2R	19021129	2R_19021129_SNP [dm3] 2R_23133606_SNP [dm6]	T	A	3.610e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8892960	X_8892960_SNP [dm3] X_8998927_SNP [dm6]	T	C	3.620e^-4	0.828	INTRON rdgA & 1 other
3R	18877054	3R_18877054_SNP [dm3] 3R_23051332_SNP [dm6]	G	C	3.625e^-4	0.828	UPSTREAM Gr94a & 1 other INTRON p53
X	11570935	X_11570935_SNP [dm3] X_11676902_SNP [dm6]	T	A	3.627e^-4	0.828	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_kn
X	9503426	X_9503426_SNP [dm3] X_9609393_SNP [dm6]	A	G	3.630e^-4	0.828	SYNONYMOUS_CODING CG42797 UPSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7888199	2R_7888199_DEL [dm3] 2R_12000694_DEL [dm6]	GAGCCTTTG	G	3.630e^-4	0.828	DOWNSTREAM otk INTERGENIC
2R	10267998	2R_10267998_SNP [dm3] 2R_14380493_SNP [dm6]	G	T	3.636e^-4	0.828	INTRON Dh44-R1
2R	8825114	2R_8825114_SNP [dm3] 2R_12937609_SNP [dm6]	G	A	3.641e^-4	0.828	DOWNSTREAM CG30487 INTRON Sans	TF binding site BDTNP1_TFBS_dl
3R	4678917	3R_4678917_SNP [dm3] 3R_8853195_SNP [dm6]	A	T	3.646e^-4	0.828	INTRON pyd
3R	26651167	3R_26651167_SNP [dm3] 3R_30825445_SNP [dm6]	G	A	3.650e^-4	0.828	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3L	16816471	3L_16816471_SNP [dm3] 3L_16823371_SNP [dm6]	C	T	3.657e^-4	0.828	INTRON CG13024	TF binding site mE1_TFBS_inv
2R	12534738	2R_12534738_SNP [dm3] 2R_16647233_SNP [dm6]	A	T	3.657e^-4	0.828	NON_SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9952530	3R_9952530_SNP [dm3] 3R_14126808_SNP [dm6]	G	A	3.659e^-4	0.828	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11621506	3R_11621506_SNP [dm3] 3R_15795784_SNP [dm6]	C	A	3.659e^-4	0.828	NON_SYNONYMOUS_CODING nsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4333910	2L_4333910_SNP [dm3] 2L_4333910_SNP [dm6]	A	G	3.663e^-4	0.828	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16413826	3R_16413826_SNP [dm3] 3R_20588104_SNP [dm6]	G	T	3.668e^-4	0.828	UPSTREAM Srp72 INTRON Sep2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1750922	3R_1750922_INS [dm3] 3R_5925200_INS [dm6]	A	ATAATAATAATAATAACATA...	3.668e^-4	0.828	INTRON CG34113
3R	26155460	3R_26155460_SNP [dm3] 3R_30329738_SNP [dm6]	A	T	3.670e^-4	0.828	INTRON hdc
X	1559296	X_1559296_SNP [dm3] X_1665263_SNP [dm6]	G	A	3.677e^-4	0.828	SYNONYMOUS_CODING dor DOWNSTREAM br INTRON Mur2B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	8929744	2R_8929744_SNP [dm3] 2R_13042239_SNP [dm6]	T	G	3.682e^-4	0.828	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3797201	3L_3797201_SNP [dm3] 3L_3797201_SNP [dm6]	A	C	3.686e^-4	0.828	INTRON CG32264
3R	14363746	3R_14363746_SNP [dm3] 3R_18538024_SNP [dm6]	G	T	3.713e^-4	0.828	INTRON fru
3L	3794091	3L_3794091_SNP [dm3] 3L_3794091_SNP [dm6]	A	G	3.715e^-4	0.828	INTRON CG32264
3L	14437030	3L_14437030_SNP [dm3] 3L_14443930_SNP [dm6]	A	G	3.722e^-4	0.828	INTRON bbg
3L	5384156	3L_5384156_SNP [dm3] 3L_5391056_SNP [dm6]	C	T	3.723e^-4	0.828	INTERGENIC
3R	24427797	3R_24427797_SNP [dm3] 3R_28602075_SNP [dm6]	G	A	3.729e^-4	0.828	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
3R	5883273	3R_5883273_SNP [dm3] 3R_10057551_SNP [dm6]	G	A	3.730e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25772771	3R_25772771_SNP [dm3] 3R_29947049_SNP [dm6]	G	C	3.731e^-4	0.828	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15055982	3R_15055982_SNP [dm3] 3R_19230260_SNP [dm6]	A	C	3.731e^-4	0.828	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15055988	3R_15055988_SNP [dm3] 3R_19230266_SNP [dm6]	C	G	3.731e^-4	0.828	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18954601	2R_18954601_SNP [dm3] 2R_23067078_SNP [dm6]	C	T	3.734e^-4	0.828	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9774844	3R_9774844_SNP [dm3] 3R_13949122_SNP [dm6]	G	A	3.734e^-4	0.828	UTR_3_PRIME CG31517	TF binding site BDTNP1_TFBS_twi
3R	15617014	3R_15617014_SNP [dm3] 3R_19791292_SNP [dm6]	C	T	3.754e^-4	0.828	DOWNSTREAM tRNA:CR31215 INTERGENIC
X	4106811	X_4106811_SNP [dm3] X_4212778_SNP [dm6]	T	C	3.755e^-4	0.828	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14354416	3R_14354416_SNP [dm3] 3R_18528694_SNP [dm6]	C	T	3.756e^-4	0.828	INTRON fru
3R	17947543	3R_17947543_SNP [dm3] 3R_22121821_SNP [dm6]	C	T	3.765e^-4	0.828	INTRON CG42390
3L	693020	3L_693020_SNP [dm3] 3L_693020_SNP [dm6]	T	C	3.774e^-4	0.828	UPSTREAM Vti1 DOWNSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5479694	3L_5479694_SNP [dm3] 3L_5486594_SNP [dm6]	A	G	3.779e^-4	0.828	INTERGENIC
X	16571344	X_16571344_SNP [dm3] X_16677311_SNP [dm6]	A	T	3.780e^-4	0.828	UPSTREAM CG13012 DOWNSTREAM CG13010 INTERGENIC
2R	15283733	2R_15283733_SNP [dm3] 2R_19396228_SNP [dm6]	C	G	3.786e^-4	0.828	UTR_3_PRIME cer UPSTREAM SdhA DOWNSTREAM hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	4743385	3R_4743385_DEL [dm3] 3R_8917663_DEL [dm6]	AGTCAT	A	3.792e^-4	0.828	INTRON pyd
2R	6497090	2R_6497090_DEL [dm3] 2R_10609585_DEL [dm6]	GGA	G	3.794e^-4	0.828	INTRON psq
X	9874993	X_9874993_SNP [dm3] X_9980960_SNP [dm6]	A	T	3.795e^-4	0.828	UPSTREAM CG15252 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25465378	3R_25465378_SNP [dm3] 3R_29639656_SNP [dm6]	C	T	3.799e^-4	0.828	INTRON Dop1R2
X	19753881	X_19753881_SNP [dm3] X_19859848_SNP [dm6]	T	A	3.801e^-4	0.828	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad
2R	16339272	2R_16339272_DEL [dm3] 2R_20451767_DEL [dm6]	GTAGGCCAGCCCAGT...	G	3.801e^-4	0.828	INTRON CG12484
X	17766821	X_17766821_SNP [dm3] X_17872788_SNP [dm6]	T	A	3.809e^-4	0.828	INTRON mnb
2R	18940178	2R_18940178_SNP [dm3] 2R_23052655_SNP [dm6]	G	T	3.812e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14287039	3R_14287039_SNP [dm3] 3R_18461317_SNP [dm6]	C	T	3.817e^-4	0.828	INTRON fru
2L	7056174	2L_7056174_SNP [dm3] 2L_7056174_SNP [dm6]	G	T	3.826e^-4	0.828	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	3341319	3L_3341319_DEL [dm3] 3L_3341319_DEL [dm6]	AGCTAGGCTTTACTAATCTG...	A	3.840e^-4	0.828	INTRON kst
3L	13895649	3L_13895649_SNP [dm3] 3L_13902549_SNP [dm6]	A	T	3.840e^-4	0.828	UTR_5_PRIME dysc
3L	17016350	3L_17016350_SNP [dm3] 3L_17023250_SNP [dm6]	G	A	3.841e^-4	0.828	SYNONYMOUS_CODING a10 UPSTREAM CG6652
2L	6424015	2L_6424015_SNP [dm3] 2L_6424015_SNP [dm6]	C	A	3.841e^-4	0.828	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14323017	3R_14323017_SNP [dm3] 3R_18497295_SNP [dm6]	A	G	3.848e^-4	0.828	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6899488	3R_6899488_SNP [dm3] 3R_11073766_SNP [dm6]	A	T	3.852e^-4	0.828	INTERGENIC
3R	16417095	3R_16417095_SNP [dm3] 3R_20591373_SNP [dm6]	G	A	3.854e^-4	0.828	SYNONYMOUS_CODING CG4159 DOWNSTREAM Srp72	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16420906	3L_16420906_SNP [dm3] 3L_16427806_SNP [dm6]	T	G	3.861e^-4	0.828	INTRON CG33158 & 1 other
2L	12150456	2L_12150456_SNP [dm3] 2L_12150456_SNP [dm6]	A	G	3.868e^-4	0.828	INTRON CG31760
3R	12109895	3R_12109895_SNP [dm3] 3R_16284173_SNP [dm6]	C	A	3.872e^-4	0.828	INTRON gish
3R	15055757	3R_15055757_SNP [dm3] 3R_19230035_SNP [dm6]	T	C	3.872e^-4	0.828	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5693480	3L_5693480_SNP [dm3] 3L_5700380_SNP [dm6]	C	G	3.883e^-4	0.828	INTRON sif
3R	14287075	3R_14287075_SNP [dm3] 3R_18461353_SNP [dm6]	C	A	3.885e^-4	0.828	INTRON fru
3L	16359221	3L_16359221_SNP [dm3] 3L_16366121_SNP [dm6]	C	T	3.891e^-4	0.828	SYNONYMOUS_CODING Cpr72Ec DOWNSTREAM Cpr72Eb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19230587	2R_19230587_SNP [dm3] 2R_23343064_SNP [dm6]	G	T	3.895e^-4	0.828	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17272679	2R_17272679_SNP [dm3] 2R_21385174_SNP [dm6]	C	A	3.898e^-4	0.828	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
3R	16414814	3R_16414814_SNP [dm3] 3R_20589092_SNP [dm6]	T	C	3.901e^-4	0.828	SYNONYMOUS_CODING Srp72 UPSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26301349	3R_26301349_SNP [dm3] 3R_30475627_SNP [dm6]	A	G	3.902e^-4	0.828	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	20631322	X_20631322_SNP [dm3] X_20760295_SNP [dm6]	A	G	3.907e^-4	0.828	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	18962362	2R_18962362_SNP [dm3] 2R_23074839_SNP [dm6]	G	T	3.921e^-4	0.828	START_GAINED CG3085 UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2842885	3L_2842885_SNP [dm3] 3L_2842885_SNP [dm6]	C	T	3.922e^-4	0.828	INTRON CG43444
2R	10530144	2R_10530144_SNP [dm3] 2R_14642639_SNP [dm6]	A	G	3.928e^-4	0.828	INTERGENIC
3L	3951520	3L_3951520_SNP [dm3] 3L_3951520_SNP [dm6]	G	A	3.929e^-4	0.828	INTRON CG14984
X	20631484	X_20631484_SNP [dm3] X_20760457_SNP [dm6]	A	C	3.948e^-4	0.828	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	17287366	X_17287366_SNP [dm3] X_17393333_SNP [dm6]	A	C	3.957e^-4	0.828	INTERGENIC
2L	20795215	2L_20795215_SNP [dm3] 2L_20795215_SNP [dm6]	A	G	3.959e^-4	0.828	INTRON vari EXON CR44146
X	8100232	X_8100232_SNP [dm3] X_8206199_SNP [dm6]	T	A	3.972e^-4	0.828	INTRON sdt
X	14845973	X_14845973_SNP [dm3] X_14951940_SNP [dm6]	A	G	3.976e^-4	0.828	UTR_5_PRIME pdgy UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4151115	3L_4151115_SNP [dm3] 3L_4151115_SNP [dm6]	A	T	3.977e^-4	0.828	INTRON CG1299	TF binding site mE1_TFBS_cad
3R	18943988	3R_18943988_SNP [dm3] 3R_23118266_SNP [dm6]	G	A	3.980e^-4	0.828	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	11809213	3R_11809213_SNP [dm3] 3R_15983491_SNP [dm6]	A	G	3.987e^-4	0.828	DOWNSTREAM Hel89B INTERGENIC
3L	3794029	3L_3794029_SNP [dm3] 3L_3794029_SNP [dm6]	T	C	3.989e^-4	0.828	INTRON CG32264
3R	25620000	3R_25620000_SNP [dm3] 3R_29794278_SNP [dm6]	T	A	3.996e^-4	0.828	UPSTREAM sro DOWNSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25620009	3R_25620009_SNP [dm3] 3R_29794287_SNP [dm6]	C	G	3.996e^-4	0.828	UPSTREAM sro DOWNSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17683213	2R_17683213_INS [dm3] 2R_21795708_INS [dm6]	T	TT	4.002e^-4	0.828	UPSTREAM CG34204 INTERGENIC
2L	17804371	2L_17804371_SNP [dm3] 2L_17804371_SNP [dm6]	C	A	4.009e^-4	0.828	INTRON CadN2
2L	12957506	2L_12957506_SNP [dm3] 2L_12957506_SNP [dm6]	T	A	4.010e^-4	0.828	INTERGENIC
X	2562199	X_2562199_SNP [dm3] X_2668166_SNP [dm6]	T	C	4.018e^-4	0.828	START_LOST sgg SPLICE_SITE_REGION sgg INTRON sgg	TF binding site mE1_TFBS_chinmo
2R	12667091	2R_12667091_SNP [dm3] 2R_16779586_SNP [dm6]	C	T	4.021e^-4	0.828	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad
3L	1249970	3L_1249970_SNP [dm3] 3L_1249970_SNP [dm6]	C	A	4.025e^-4	0.828	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129
X	13992478	X_13992478_SNP [dm3] X_14098445_SNP [dm6]	T	G	4.031e^-4	0.828	INTERGENIC
2R	2793455	2R_2793455_SNP [dm3] 2R_6905950_SNP [dm6]	T	C	4.036e^-4	0.828	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
X	3249984	X_3249984_SNP [dm3] X_3355951_SNP [dm6]	G	C	4.051e^-4	0.828	INTERGENIC
3R	25785688	3R_25785688_SNP [dm3] 3R_29959966_SNP [dm6]	C	T	4.052e^-4	0.828	INTRON TkR99D
3L	20391693	3L_20391693_SNP [dm3] 3L_20398593_SNP [dm6]	G	A	4.054e^-4	0.828	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22430662	3R_22430662_SNP [dm3] 3R_26604940_SNP [dm6]	C	T	4.057e^-4	0.828	DOWNSTREAM scrib INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26109919	3R_26109919_SNP [dm3] 3R_30284197_SNP [dm6]	A	G	4.057e^-4	0.828	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	6914159	3R_6914159_SNP [dm3] 3R_11088437_SNP [dm6]	A	T	4.059e^-4	0.828	UTR_5_PRIME CG43449	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20992085	3R_20992085_SNP [dm3] 3R_25166363_SNP [dm6]	A	T	4.059e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7050137	2L_7050137_SNP [dm3] 2L_7050137_SNP [dm6]	G	C	4.063e^-4	0.828	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11382586	3L_11382586_DEL [dm3] 3L_11389486_DEL [dm6]	GAACAG	G	4.068e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1248941	3L_1248941_SNP [dm3] 3L_1248941_SNP [dm6]	G	A	4.068e^-4	0.828	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8977058	3R_8977058_SNP [dm3] 3R_13151336_SNP [dm6]	C	G	4.077e^-4	0.828	INTRON timeout & 2 others
2R	8894042	2R_8894042_SNP [dm3] 2R_13006537_SNP [dm6]	C	T	4.078e^-4	0.828	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27258931	3R_27258931_SNP [dm3] 3R_31433209_SNP [dm6]	G	T	4.089e^-4	0.828	INTRON Gprk2
3R	11809165	3R_11809165_SNP [dm3] 3R_15983443_SNP [dm6]	A	G	4.090e^-4	0.828	UTR_3_PRIME Hel89B
X	13905636	X_13905636_SNP [dm3] X_14011603_SNP [dm6]	G	A	4.091e^-4	0.828	INTERGENIC
2R	19585927	2R_19585927_SNP [dm3] 2R_23698404_SNP [dm6]	C	A	4.095e^-4	0.828	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15504148	X_15504148_SNP [dm3] X_15610115_SNP [dm6]	A	C	4.095e^-4	0.828	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13897288	2R_13897288_SNP [dm3] 2R_18009783_SNP [dm6]	A	G	4.096e^-4	0.828	INTERGENIC
3R	25770229	3R_25770229_SNP [dm3] 3R_29944507_SNP [dm6]	G	A	4.110e^-4	0.828	INTRON CG15523
X	20631205	X_20631205_INS [dm3] X_20760178_INS [dm6]	A	AA	4.110e^-4	0.828	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	5331945	3L_5331945_SNP [dm3] 3L_5338845_SNP [dm6]	G	C	4.116e^-4	0.828	INTERGENIC
X	22034361	X_22034361_SNP [dm3] X_22632525_SNP [dm6]	T	C	4.121e^-4	0.828	NON_SYNONYMOUS_CODING Cda4	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	22032960	X_22032960_SNP [dm3] X_22631124_SNP [dm6]	A	G	4.121e^-4	0.828	INTRON Cda4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10246552	3L_10246552_SNP [dm3] 3L_10253452_SNP [dm6]	T	C	4.121e^-4	0.828	INTERGENIC
3L	11348436	3L_11348436_SNP [dm3] 3L_11355336_SNP [dm6]	A	G	4.126e^-4	0.828	INTERGENIC
X	20632809	X_20632809_SNP [dm3] X_20761782_SNP [dm6]	G	A	4.130e^-4	0.828	UTR_3_PRIME shakB UPSTREAM CR43838
X	5531308	X_5531308_SNP [dm3] X_5637275_SNP [dm6]	C	T	4.133e^-4	0.828	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3794057	3L_3794057_SNP [dm3] 3L_3794057_SNP [dm6]	G	A	4.136e^-4	0.828	INTRON CG32264
2R	17644691	2R_17644691_SNP [dm3] 2R_21757186_SNP [dm6]	T	C	4.137e^-4	0.828	UPSTREAM Grx-1 INTERGENIC
3L	2644168	3L_2644168_SNP [dm3] 3L_2644168_SNP [dm6]	A	T	4.139e^-4	0.828	UPSTREAM CG14949 INTERGENIC
3R	16414826	3R_16414826_SNP [dm3] 3R_20589104_SNP [dm6]	A	C	4.148e^-4	0.828	SYNONYMOUS_CODING Srp72 UPSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3690310	2L_3690310_SNP [dm3] 2L_3690310_SNP [dm6]	A	G	4.150e^-4	0.828	INTRON CG34340
3L	17756485	3L_17756485_SNP [dm3] 3L_17763385_SNP [dm6]	T	A	4.151e^-4	0.828	DOWNSTREAM CG32181 INTRON Adgf-A & 1 other	TF binding site mE1_TFBS_Trl
3R	7337446	3R_7337446_SNP [dm3] 3R_11511724_SNP [dm6]	A	C	4.156e^-4	0.828	INTERGENIC
2R	13878324	2R_13878324_SNP [dm3] 2R_17990819_SNP [dm6]	A	T	4.160e^-4	0.828	INTRON dpr13
2L	5384303	2L_5384303_SNP [dm3] 2L_5384303_SNP [dm6]	A	G	4.163e^-4	0.828	INTERGENIC
X	19050158	X_19050158_SNP [dm3] X_19156125_SNP [dm6]	T	A	4.167e^-4	0.828	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14846312	X_14846312_INS [dm3] X_14952279_INS [dm6]	A	ATATGAGAAGTAAAAACAAA...	4.176e^-4	0.828	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13374256	3L_13374256_SNP [dm3] 3L_13381156_SNP [dm6]	C	T	4.181e^-4	0.828	NON_SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11828636	3R_11828636_SNP [dm3] 3R_16002914_SNP [dm6]	G	A	4.185e^-4	0.828	NON_SYNONYMOUS_CODING srp SYNONYMOUS_CODING srp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20673479	X_20673479_SNP [dm3] X_20802452_SNP [dm6]	A	G	4.188e^-4	0.828	INTRON shakB
3L	3875223	3L_3875223_SNP [dm3] 3L_3875223_SNP [dm6]	C	T	4.195e^-4	0.828	INTERGENIC
3L	15971047	3L_15971047_SNP [dm3] 3L_15977947_SNP [dm6]	C	A	4.196e^-4	0.828	UPSTREAM CG17028 INTRON brm & 1 other
3R	13918385	3R_13918385_DEL [dm3] 3R_18092663_DEL [dm6]	AATCCAGCCA	A	4.203e^-4	0.828	INTRON sr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10123447	3L_10123447_SNP [dm3] 3L_10130347_SNP [dm6]	A	G	4.211e^-4	0.828	INTRON dpr6
3L	1231013	3L_1231013_SNP [dm3] 3L_1231013_SNP [dm6]	C	T	4.216e^-4	0.828	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15061186	2R_15061186_SNP [dm3] 2R_19173681_SNP [dm6]	A	G	4.227e^-4	0.828	INTRON CG10737
X	11570554	X_11570554_SNP [dm3] X_11676521_SNP [dm6]	C	A	4.236e^-4	0.828	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	15284789	2R_15284789_SNP [dm3] 2R_19397284_SNP [dm6]	G	C	4.255e^-4	0.828	UTR_3_PRIME hts UPSTREAM cer DOWNSTREAM hts	TF binding site mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	2000072	3L_2000072_SNP [dm3] 3L_2000072_SNP [dm6]	G	C	4.256e^-4	0.828	INTERGENIC
3R	4368737	3R_4368737_SNP [dm3] 3R_8543015_SNP [dm6]	A	G	4.259e^-4	0.828	INTERGENIC
X	4420818	X_4420818_SNP [dm3] X_4526785_SNP [dm6]	G	A	4.264e^-4	0.828	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16349862	2R_16349862_SNP [dm3] 2R_20462357_SNP [dm6]	T	C	4.268e^-4	0.828	INTRON CG12484
2R	20026206	2R_20026206_SNP [dm3] 2R_24138683_SNP [dm6]	A	G	4.280e^-4	0.828	UPSTREAM CG4065 & 1 other EXON CR44826	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
2L	7938565	2L_7938565_SNP [dm3] 2L_7938565_SNP [dm6]	A	G	4.285e^-4	0.828	INTRON Snoo
3L	2776195	3L_2776195_SNP [dm3] 3L_2776195_SNP [dm6]	G	A	4.289e^-4	0.828	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16814080	X_16814080_SNP [dm3] X_16920047_SNP [dm6]	T	A	4.290e^-4	0.828	INTRON CG4928
2R	19210918	2R_19210918_SNP [dm3] 2R_23323395_SNP [dm6]	A	G	4.302e^-4	0.828	UTR_5_PRIME CG30416 UPSTREAM CG9861
3L	10712937	3L_10712937_SNP [dm3] 3L_10719837_SNP [dm6]	T	A	4.306e^-4	0.828	INTERGENIC
3L	12709423	3L_12709423_SNP [dm3] 3L_12716323_SNP [dm6]	A	C	4.307e^-4	0.828	INTERGENIC
2R	18940192	2R_18940192_SNP [dm3] 2R_23052669_SNP [dm6]	G	T	4.314e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6207967	X_6207967_SNP [dm3] X_6313934_SNP [dm6]	G	C	4.326e^-4	0.828	INTRON CG15894
3R	14331050	3R_14331050_SNP [dm3] 3R_18505328_SNP [dm6]	T	A	4.334e^-4	0.828	INTRON fru
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	4.337e^-4	0.828	INTRON gish
3L	18073396	3L_18073396_INS [dm3] 3L_18080296_INS [dm6]	G	GG	4.337e^-4	0.828	DOWNSTREAM CR43253 INTERGENIC
3L	17772702	3L_17772702_SNP [dm3] 3L_17779602_SNP [dm6]	C	A	4.338e^-4	0.828	INTERGENIC
3L	20392216	3L_20392216_SNP [dm3] 3L_20399116_SNP [dm6]	C	T	4.340e^-4	0.828	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12566371	2R_12566371_SNP [dm3] 2R_16678866_SNP [dm6]	G	T	4.340e^-4	0.828	INTRON CG30463
X	8632764	X_8632764_SNP [dm3] X_8738731_SNP [dm6]	C	G	4.345e^-4	0.828	INTERGENIC
3L	13962392	3L_13962392_SNP [dm3] 3L_13969292_SNP [dm6]	G	A	4.348e^-4	0.828	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
X	20631420	X_20631420_SNP [dm3] X_20760393_SNP [dm6]	G	A	4.349e^-4	0.828	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	22029138	X_22029138_SNP [dm3] X_22627302_SNP [dm6]	C	T	4.357e^-4	0.828	INTRON Cda4
3R	25795787	3R_25795787_SNP [dm3] 3R_29970065_SNP [dm6]	C	T	4.359e^-4	0.828	UPSTREAM TkR99D INTERGENIC
3L	3676360	3L_3676360_SNP [dm3] 3L_3676360_SNP [dm6]	G	T	4.359e^-4	0.828	INTERGENIC
2L	20776156	2L_20776156_SNP [dm3] 2L_20776156_SNP [dm6]	C	G	4.360e^-4	0.828	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	22030209	X_22030209_SNP [dm3] X_22628373_SNP [dm6]	A	G	4.364e^-4	0.828	INTRON Cda4
3R	6249228	3R_6249228_SNP [dm3] 3R_10423506_SNP [dm6]	T	A	4.365e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5580069	3R_5580069_SNP [dm3] 3R_9754347_SNP [dm6]	G	A	4.371e^-4	0.828	DOWNSTREAM Rpt3R INTRON CG16908	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	4624957	X_4624957_SNP [dm3] X_4730924_SNP [dm6]	T	C	4.374e^-4	0.828	INTERGENIC
X	5531339	X_5531339_SNP [dm3] X_5637306_SNP [dm6]	C	T	4.376e^-4	0.828	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9692076	X_9692076_SNP [dm3] X_9798043_SNP [dm6]	G	A	4.377e^-4	0.828	INTRON CG32698
3R	23207038	3R_23207038_SNP [dm3] 3R_27381316_SNP [dm6]	G	C	4.377e^-4	0.828	UTR_3_PRIME side INTRON side
3L	3795146	3L_3795146_SNP [dm3] 3L_3795146_SNP [dm6]	C	A	4.379e^-4	0.828	UPSTREAM CG32264 INTRON CG32264
2R	11800817	2R_11800817_SNP [dm3] 2R_15913312_SNP [dm6]	G	A	4.387e^-4	0.828	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14360233	2R_14360233_SNP [dm3] 2R_18472728_SNP [dm6]	T	G	4.389e^-4	0.828	INTRON CG30116
3L	15898088	3L_15898088_SNP [dm3] 3L_15904988_SNP [dm6]	G	A	4.389e^-4	0.828	INTRON sff
3L	17611458	3L_17611458_SNP [dm3] 3L_17618358_SNP [dm6]	A	T	4.391e^-4	0.828	INTRON Eip74EF
3R	6576626	3R_6576626_INS [dm3] 3R_10750904_INS [dm6]	A	CCAAAGTTACCAAATT...	4.392e^-4	0.828	UTR_5_PRIME TkR86C UPSTREAM TkR86C
2L	13800227	2L_13800227_DEL [dm3] 2L_13800227_DEL [dm6]	AACTTTTAATGAATCTCTCT...	A	4.398e^-4	0.828	DOWNSTREAM Sec71 INTERGENIC
2R	14573828	2R_14573828_SNP [dm3] 2R_18686323_SNP [dm6]	A	T	4.401e^-4	0.828	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17283642	2R_17283642_SNP [dm3] 2R_21396137_SNP [dm6]	A	G	4.402e^-4	0.828	INTRON Sdc
2R	5229996	2R_5229996_SNP [dm3] 2R_9342491_SNP [dm6]	G	C	4.406e^-4	0.828	INTRON CG13954 & 1 other
3R	15278006	3R_15278006_SNP [dm3] 3R_19452284_SNP [dm6]	C	T	4.411e^-4	0.828	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	26301379	3R_26301379_SNP [dm3] 3R_30475657_SNP [dm6]	T	C	4.419e^-4	0.828	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	8558822	3R_8558822_SNP [dm3] 3R_12733100_SNP [dm6]	T	C	4.424e^-4	0.828	INTERGENIC
3R	12238566	3R_12238566_DEL [dm3] 3R_16412844_DEL [dm6]	TT	T	4.429e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10489954	3L_10489954_SNP [dm3] 3L_10496854_SNP [dm6]	C	A	4.433e^-4	0.828	INTRON A2bp1
3L	14066774	3L_14066774_SNP [dm3] 3L_14073674_SNP [dm6]	T	A	4.442e^-4	0.828	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
3L	16558148	3L_16558148_SNP [dm3] 3L_16565048_SNP [dm6]	A	G	4.445e^-4	0.828	SYNONYMOUS_CODING Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16385897	2R_16385897_SNP [dm3] 2R_20498392_SNP [dm6]	C	T	4.448e^-4	0.828	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Protein_HighDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results