DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.397e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06554

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.4721	0.0345
In_2L_t	6.2315	0.0443

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2387 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3949365	3L_3949365_SNP [dm3] 3L_3949365_SNP [dm6]	T	C	5.495e^-7	0.448	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
3R	4370437	3R_4370437_SNP [dm3] 3R_8544715_SNP [dm6]	T	C	5.910e^-7	0.448	UPSTREAM CR45575 INTERGENIC
3L	6131752	3L_6131752_SNP [dm3] 3L_6138652_SNP [dm6]	A	G	8.919e^-7	0.448	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
3L	17771268	3L_17771268_SNP [dm3] 3L_17778168_SNP [dm6]	G	T	9.992e^-7	0.448	INTERGENIC
2R	17648180	2R_17648180_SNP [dm3] 2R_21760675_SNP [dm6]	A	T	1.194e^-6	0.448	INTERGENIC
3R	15277868	3R_15277868_SNP [dm3] 3R_19452146_SNP [dm6]	C	A	1.486e^-6	0.464	INTRON CG31221
2R	7888199	2R_7888199_DEL [dm3] 2R_12000694_DEL [dm6]	GAGCCTTTG	G	2.846e^-6	0.639	DOWNSTREAM otk INTERGENIC
2R	16566918	2R_16566918_SNP [dm3] 2R_20679413_SNP [dm6]	C	T	3.118e^-6	0.639	INTERGENIC
3L	3792824	3L_3792824_SNP [dm3] 3L_3792824_SNP [dm6]	C	A	3.995e^-6	0.639	INTRON CG32264
3L	17771270	3L_17771270_SNP [dm3] 3L_17778170_SNP [dm6]	G	A	5.359e^-6	0.639	INTERGENIC
3R	4635583	3R_4635583_SNP [dm3] 3R_8809861_SNP [dm6]	C	T	5.786e^-6	0.639	UPSTREAM CG9837 INTRON CG9837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	4370439	3R_4370439_SNP [dm3] 3R_8544717_SNP [dm6]	T	G	5.896e^-6	0.639	UPSTREAM CR45575 INTERGENIC
X	15249529	X_15249529_INS [dm3] X_15355496_INS [dm6]	T	TGGCAGCTTT	6.340e^-6	0.639	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	5485885	3L_5485885_SNP [dm3] 3L_5492785_SNP [dm6]	C	T	6.608e^-6	0.639	DOWNSTREAM CR44520 INTERGENIC
3R	23893375	3R_23893375_SNP [dm3] 3R_28067653_SNP [dm6]	G	A	7.429e^-6	0.639	INTRON CG34362
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	7.519e^-6	0.639	INTRON Brf
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	7.938e^-6	0.639	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	9691675	3L_9691675_SNP [dm3] 3L_9698575_SNP [dm6]	A	G	8.170e^-6	0.639	UTR_5_PRIME UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3794031	3L_3794031_SNP [dm3] 3L_3794031_SNP [dm6]	C	T	8.405e^-6	0.639	INTRON CG32264
3L	17771230	3L_17771230_SNP [dm3] 3L_17778130_SNP [dm6]	G	C	8.701e^-6	0.639	INTERGENIC
2L	6741569	2L_6741569_SNP [dm3] 2L_6741569_SNP [dm6]	A	G	9.487e^-6	0.639	UPSTREAM CG11221 INTERGENIC
3L	3951520	3L_3951520_SNP [dm3] 3L_3951520_SNP [dm6]	G	A	9.547e^-6	0.639	INTRON CG14984
2L	5890114	2L_5890114_SNP [dm3] 2L_5890114_SNP [dm6]	C	T	9.652e^-6	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16416266	X_16416266_SNP [dm3] X_16522233_SNP [dm6]	T	G	9.689e^-6	0.639	DOWNSTREAM Cnx14D INTRON para
3L	9667834	3L_9667834_SNP [dm3] 3L_9674734_SNP [dm6]	T	C	9.956e^-6	0.639	INTRON fry
3R	26301349	3R_26301349_SNP [dm3] 3R_30475627_SNP [dm6]	A	G	1.011e^-5	0.639	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6771751	2L_6771751_SNP [dm3] 2L_6771751_SNP [dm6]	C	T	1.017e^-5	0.639	UPSTREAM CG11321 INTRON CG11321
3L	5377811	3L_5377811_SNP [dm3] 3L_5384711_SNP [dm6]	T	A	1.029e^-5	0.639	INTERGENIC
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	1.049e^-5	0.639	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	20453090	X_20453090_INS [dm3] X_20582063_INS [dm6]	G	GCGGTGGCTTGGTG...	1.072e^-5	0.639	INTERGENIC
3L	18956902	3L_18956902_SNP [dm3] 3L_18963802_SNP [dm6]	A	G	1.117e^-5	0.639	INTERGENIC
3R	15024951	3R_15024951_SNP [dm3] 3R_19199229_SNP [dm6]	C	T	1.123e^-5	0.639	INTRON CG31475
2L	6771755	2L_6771755_SNP [dm3] 2L_6771755_SNP [dm6]	A	T	1.149e^-5	0.639	UPSTREAM CG11321 INTRON CG11321
3R	4395482	3R_4395482_SNP [dm3] 3R_8569760_SNP [dm6]	T	C	1.182e^-5	0.639	DOWNSTREAM Cenp-C INTERGENIC
3L	3686501	3L_3686501_SNP [dm3] 3L_3686501_SNP [dm6]	C	T	1.193e^-5	0.639	INTERGENIC
X	15414300	X_15414300_SNP [dm3] X_15520267_SNP [dm6]	A	T	1.306e^-5	0.642	INTRON Ac13E
3L	6975633	3L_6975633_SNP [dm3] 3L_6982533_SNP [dm6]	C	T	1.363e^-5	0.642	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4383673	3R_4383673_SNP [dm3] 3R_8557951_SNP [dm6]	C	A	1.393e^-5	0.642	INTERGENIC
3L	17771337	3L_17771337_SNP [dm3] 3L_17778237_SNP [dm6]	T	A	1.434e^-5	0.642	INTERGENIC
3R	4404266	3R_4404266_SNP [dm3] 3R_8578544_SNP [dm6]	G	A	1.437e^-5	0.642	INTRON 5-HT2B
3L	2803748	3L_2803748_SNP [dm3] 3L_2803748_SNP [dm6]	G	A	1.472e^-5	0.642	INTRON CG43444
3L	3797201	3L_3797201_SNP [dm3] 3L_3797201_SNP [dm6]	A	C	1.477e^-5	0.642	INTRON CG32264
X	16298234	X_16298234_SNP [dm3] X_16404201_SNP [dm6]	T	A	1.562e^-5	0.642	UPSTREAM CG9981 INTRON CG9981
3R	23870290	3R_23870290_SNP [dm3] 3R_28044568_SNP [dm6]	G	T	1.592e^-5	0.642	INTRON CG34362
2L	5890101	2L_5890101_SNP [dm3] 2L_5890101_SNP [dm6]	G	A	1.645e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5890104	2L_5890104_SNP [dm3] 2L_5890104_SNP [dm6]	T	C	1.645e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17771241	3L_17771241_SNP [dm3] 3L_17778141_SNP [dm6]	C	T	1.732e^-5	0.642	INTERGENIC
2L	7012115	2L_7012115_SNP [dm3] 2L_7012115_SNP [dm6]	T	C	1.790e^-5	0.642	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17771226	3L_17771226_SNP [dm3] 3L_17778126_SNP [dm6]	A	G	1.855e^-5	0.642	INTERGENIC
3L	3792814	3L_3792814_SNP [dm3] 3L_3792814_SNP [dm6]	G	A	1.945e^-5	0.642	INTRON CG32264
3L	23078553	3L_23078553_DEL [dm3] 3L_23085453_DEL [dm6]	TT	T	1.951e^-5	0.642	INTERGENIC	transposable element FlyBase
3L	17771253	3L_17771253_SNP [dm3] 3L_17778153_SNP [dm6]	A	T	1.952e^-5	0.642	INTERGENIC
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	1.979e^-5	0.642	INTRON gish
X	4106661	X_4106661_SNP [dm3] X_4212628_SNP [dm6]	C	T	2.030e^-5	0.642	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16566909	2R_16566909_SNP [dm3] 2R_20679404_SNP [dm6]	T	C	2.078e^-5	0.642	INTERGENIC
3R	12110205	3R_12110205_SNP [dm3] 3R_16284483_SNP [dm6]	T	C	2.121e^-5	0.642	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9057775	2R_9057775_SNP [dm3] 2R_13170270_SNP [dm6]	T	C	2.159e^-5	0.642	INTRON CR45142 & 1 other
3R	26301379	3R_26301379_SNP [dm3] 3R_30475657_SNP [dm6]	T	C	2.178e^-5	0.642	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	12106887	3R_12106887_SNP [dm3] 3R_16281165_SNP [dm6]	C	A	2.215e^-5	0.642	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17771247	3L_17771247_SNP [dm3] 3L_17778147_SNP [dm6]	C	T	2.222e^-5	0.642	INTERGENIC
3L	9693583	3L_9693583_SNP [dm3] 3L_9700483_SNP [dm6]	C	T	2.279e^-5	0.642	DOWNSTREAM CG6761 & 1 other INTERGENIC
X	5073522	X_5073522_SNP [dm3] X_5179489_SNP [dm6]	G	A	2.307e^-5	0.642	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17648177	2R_17648177_SNP [dm3] 2R_21760672_SNP [dm6]	C	A	2.312e^-5	0.642	INTERGENIC
2L	4333914	2L_4333914_SNP [dm3] 2L_4333914_SNP [dm6]	C	T	2.336e^-5	0.642	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4782350	3L_4782350_SNP [dm3] 3L_4782350_SNP [dm6]	C	T	2.342e^-5	0.642	INTRON RhoGEF64C
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	2.361e^-5	0.642	SYNONYMOUS_CODING Brf
2R	9015023	2R_9015023_SNP [dm3] 2R_13127518_SNP [dm6]	G	C	2.367e^-5	0.642	DOWNSTREAM CG3955 INTERGENIC
2L	9413708	2L_9413708_SNP [dm3] 2L_9413708_SNP [dm6]	C	A	2.374e^-5	0.642	INTRON Shawl
X	12263539	X_12263539_SNP [dm3] X_12369506_SNP [dm6]	G	T	2.425e^-5	0.642	INTERGENIC
3R	12110222	3R_12110222_SNP [dm3] 3R_16284500_SNP [dm6]	T	C	2.432e^-5	0.642	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	2.525e^-5	0.642	INTRON gish
3R	26301892	3R_26301892_SNP [dm3] 3R_30476170_SNP [dm6]	G	A	2.532e^-5	0.642	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14081117	3L_14081117_SNP [dm3] 3L_14088017_SNP [dm6]	T	A	2.554e^-5	0.642	INTERGENIC
X	5388885	X_5388885_SNP [dm3] X_5494852_SNP [dm6]	T	C	2.590e^-5	0.642	NON_SYNONYMOUS_CODING frma DOWNSTREAM SPR
X	8916526	X_8916526_DEL [dm3] X_9022493_DEL [dm6]	ACAATCCCAA	A	2.617e^-5	0.642	INTRON CR43836 & 1 other
3R	12058421	3R_12058421_SNP [dm3] 3R_16232699_SNP [dm6]	G	A	2.619e^-5	0.642	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11551086	X_11551086_INS [dm3] X_11657053_INS [dm6]	C	CC	2.692e^-5	0.642	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	2.724e^-5	0.642	INTRON Brf
3L	12943182	3L_12943182_INS [dm3] 3L_12950082_INS [dm6]	T	TT	2.737e^-5	0.642	INTERGENIC
2L	6771736	2L_6771736_SNP [dm3] 2L_6771736_SNP [dm6]	A	C	2.740e^-5	0.642	UPSTREAM CG11321 INTRON CG11321
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	3.002e^-5	0.691	INTERGENIC
X	13213291	X_13213291_SNP [dm3] X_13319258_SNP [dm6]	G	T	3.025e^-5	0.691	INTRON IP3K2
3L	20595178	3L_20595178_SNP [dm3] 3L_20602078_SNP [dm6]	G	A	3.062e^-5	0.691	INTRON knrl
2L	9413678	2L_9413678_SNP [dm3] 2L_9413678_SNP [dm6]	A	T	3.175e^-5	0.696	INTRON Shawl
2R	7891651	2R_7891651_SNP [dm3] 2R_12004146_SNP [dm6]	A	C	3.191e^-5	0.696	SYNONYMOUS_CODING otk
3L	2478087	3L_2478087_SNP [dm3] 3L_2478087_SNP [dm6]	T	G	3.240e^-5	0.696	INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12108896	3R_12108896_SNP [dm3] 3R_16283174_SNP [dm6]	A	G	3.240e^-5	0.696	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	12105616	3R_12105616_SNP [dm3] 3R_16279894_SNP [dm6]	A	C	3.332e^-5	0.696	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	3.376e^-5	0.696	INTRON gish
3R	25296491	3R_25296491_SNP [dm3] 3R_29470769_SNP [dm6]	G	A	3.386e^-5	0.696	INTRON Ptp99A
3R	12106379	3R_12106379_DEL [dm3] 3R_16280657_DEL [dm6]	ATTAACGTA	A	3.394e^-5	0.696	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4100363	X_4100363_SNP [dm3] X_4206330_SNP [dm6]	A	G	3.485e^-5	0.696	UPSTREAM Fas2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4401147	3R_4401147_DEL [dm3] 3R_8575425_DEL [dm6]	TT	T	3.613e^-5	0.696	INTERGENIC
X	20453085	X_20453085_SNP [dm3] X_20582058_SNP [dm6]	G	T	3.643e^-5	0.696	INTERGENIC
2R	16998517	2R_16998517_SNP [dm3] 2R_21111012_SNP [dm6]	A	G	3.687e^-5	0.696	INTRON ktub
3L	10644477	3L_10644477_DEL [dm3] 3L_10651377_DEL [dm6]	CCC	A	3.706e^-5	0.696	INTRON CG32066
2L	5890117	2L_5890117_INS [dm3] 2L_5890117_INS [dm6]	A	AA	3.745e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13213950	X_13213950_SNP [dm3] X_13319917_SNP [dm6]	C	T	3.771e^-5	0.696	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	4388193	3R_4388193_SNP [dm3] 3R_8562471_SNP [dm6]	C	T	3.780e^-5	0.696	NON_SYNONYMOUS_CODING mRpS18A UPSTREAM CG31460 & 1 other DOWNSTREAM CR44291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20595131	3L_20595131_SNP [dm3] 3L_20602031_SNP [dm6]	T	C	3.787e^-5	0.696	INTRON knrl
X	13214388	X_13214388_DEL [dm3] X_13320355_DEL [dm6]	TTTC	A	3.803e^-5	0.696	UPSTREAM IP3K2 INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	22933505	3L_22933505_SNP [dm3] 3L_22940405_SNP [dm6]	A	G	3.833e^-5	0.696	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	20292443	X_20292443_SNP [dm3] X_20421416_SNP [dm6]	C	T	3.846e^-5	0.696	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
X	8632764	X_8632764_SNP [dm3] X_8738731_SNP [dm6]	C	G	3.860e^-5	0.696	INTERGENIC
3R	12810242	3R_12810242_SNP [dm3] 3R_16984520_SNP [dm6]	G	T	4.018e^-5	0.707	INTRON CG18622
3L	5460860	3L_5460860_SNP [dm3] 3L_5467760_SNP [dm6]	A	G	4.031e^-5	0.707	INTERGENIC
3L	2764125	3L_2764125_SNP [dm3] 3L_2764125_SNP [dm6]	G	T	4.046e^-5	0.707	INTRON Mrtf
X	4106629	X_4106629_SNP [dm3] X_4212596_SNP [dm6]	C	T	4.091e^-5	0.707	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5643974	3L_5643974_SNP [dm3] 3L_5650874_SNP [dm6]	G	A	4.177e^-5	0.707	UTR_3_PRIME Blimp-1
X	20845056	X_20845056_SNP [dm3] X_20974029_SNP [dm6]	T	C	4.179e^-5	0.707	INTERGENIC
X	4112372	X_4112372_SNP [dm3] X_4218339_SNP [dm6]	A	G	4.190e^-5	0.707	SYNONYMOUS_CODING CG15570 UPSTREAM CG15571	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21212294	3R_21212294_SNP [dm3] 3R_25386572_SNP [dm6]	G	A	4.294e^-5	0.714	INTRON Fur1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16413247	3L_16413247_SNP [dm3] 3L_16420147_SNP [dm6]	C	T	4.332e^-5	0.714	SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4785414	3R_4785414_SNP [dm3] 3R_8959692_SNP [dm6]	T	A	4.359e^-5	0.714	INTRON CG11966
3R	13890892	3R_13890892_SNP [dm3] 3R_18065170_SNP [dm6]	C	T	4.476e^-5	0.714	INTERGENIC
3R	26032662	3R_26032662_SNP [dm3] 3R_30206940_SNP [dm6]	G	A	4.556e^-5	0.714	UPSTREAM snoRNA:Psi28S-2149 DOWNSTREAM snoRNA:Psi18S-1377e & 5 others INTRON RpS7
3R	12110252	3R_12110252_DEL [dm3] 3R_16284530_DEL [dm6]	GTA	G	4.629e^-5	0.714	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9692022	3L_9692022_SNP [dm3] 3L_9698922_SNP [dm6]	T	G	4.662e^-5	0.714	INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8890686	X_8890686_SNP [dm3] X_8996653_SNP [dm6]	C	A	4.663e^-5	0.714	INTRON rdgA & 1 other
3L	10344035	3L_10344035_INS [dm3] 3L_10350935_INS [dm6]	A	ATTTTTATA	4.730e^-5	0.714	INTRON CR44327
3R	15025118	3R_15025118_SNP [dm3] 3R_19199396_SNP [dm6]	C	A	4.757e^-5	0.714	INTRON CG31475
2L	7717124	2L_7717124_SNP [dm3] 2L_7717124_SNP [dm6]	C	T	4.862e^-5	0.714	SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
3R	12109322	3R_12109322_SNP [dm3] 3R_16283600_SNP [dm6]	G	A	4.881e^-5	0.714	INTRON gish
X	4106811	X_4106811_SNP [dm3] X_4212778_SNP [dm6]	T	C	4.891e^-5	0.714	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4105102	X_4105102_SNP [dm3] X_4211069_SNP [dm6]	G	A	4.903e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9401346	2L_9401346_SNP [dm3] 2L_9401346_SNP [dm6]	T	C	4.926e^-5	0.714	INTRON Shawl
3R	15024948	3R_15024948_SNP [dm3] 3R_19199226_SNP [dm6]	C	A	4.940e^-5	0.714	INTRON CG31475
3R	13202518	3R_13202518_SNP [dm3] 3R_17376796_SNP [dm6]	T	C	4.954e^-5	0.714	INTRON Brf
3L	4101387	3L_4101387_SNP [dm3] 3L_4101387_SNP [dm6]	T	C	4.963e^-5	0.714	UPSTREAM CG14995 INTRON CG14995	TF binding site BDTNP1_TFBS_dl
2L	10452725	2L_10452725_SNP [dm3] 2L_10452725_SNP [dm6]	C	T	4.984e^-5	0.714	SYNONYMOUS_CODING CG5322 UPSTREAM ppk10
2R	9048892	2R_9048892_SNP [dm3] 2R_13161387_SNP [dm6]	T	C	5.043e^-5	0.714	SYNONYMOUS_CODING Nrk	TF binding site BDTNP1_TFBS_twi
3L	3794142	3L_3794142_DEL [dm3] 3L_3794142_DEL [dm6]	TT	T	5.050e^-5	0.714	INTRON CG32264
2R	11058451	2R_11058451_SNP [dm3] 2R_15170946_SNP [dm6]	A	G	5.143e^-5	0.714	INTRON igl
X	21156077	X_21156077_SNP [dm3] X_21285050_SNP [dm6]	C	A	5.272e^-5	0.714	UPSTREAM CG1494 INTERGENIC
2R	11847894	2R_11847894_SNP [dm3] 2R_15960389_SNP [dm6]	A	T	5.306e^-5	0.714	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2478084	3L_2478084_SNP [dm3] 3L_2478084_SNP [dm6]	A	G	5.377e^-5	0.714	SPLICE_SITE_REGION Cyp4d20 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6840232	3L_6840232_SNP [dm3] 3L_6847132_SNP [dm6]	T	C	5.413e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	15249754	3R_15249754_SNP [dm3] 3R_19424032_SNP [dm6]	T	C	5.490e^-5	0.714	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
X	21149151	X_21149151_SNP [dm3] X_21278124_SNP [dm6]	G	T	5.491e^-5	0.714	INTRON CG32521
3R	18600033	3R_18600033_SNP [dm3] 3R_22774311_SNP [dm6]	C	A	5.519e^-5	0.714	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
2R	9058122	2R_9058122_DEL [dm3] 2R_13170617_DEL [dm6]	CTTGCACTTGCTCTTTGCA...	C	5.600e^-5	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25795787	3R_25795787_SNP [dm3] 3R_29970065_SNP [dm6]	C	T	5.674e^-5	0.714	UPSTREAM TkR99D INTERGENIC
2R	9059713	2R_9059713_SNP [dm3] 2R_13172208_SNP [dm6]	A	T	5.686e^-5	0.714	INTRON AGBE
3L	1085723	3L_1085723_SNP [dm3] 3L_1085723_SNP [dm6]	C	T	5.811e^-5	0.714	INTRON bab1
2R	14663907	2R_14663907_SNP [dm3] 2R_18776402_SNP [dm6]	A	G	5.814e^-5	0.714	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25298487	3R_25298487_SNP [dm3] 3R_29472765_SNP [dm6]	A	T	5.881e^-5	0.714	INTRON Ptp99A
2R	18023413	2R_18023413_SNP [dm3] 2R_22135908_SNP [dm6]	G	A	5.919e^-5	0.714	INTERGENIC
X	17874481	X_17874481_SNP [dm3] X_17980448_SNP [dm6]	T	C	5.967e^-5	0.714	INTRON Sh
3L	2803751	3L_2803751_SNP [dm3] 3L_2803751_SNP [dm6]	T	G	5.972e^-5	0.714	INTRON CG43444
3L	6111213	3L_6111213_DEL [dm3] 3L_6118113_DEL [dm6]	AGAGAGA	A	6.079e^-5	0.714	INTRON Ets65A
2R	17653321	2R_17653321_SNP [dm3] 2R_21765816_SNP [dm6]	C	A	6.130e^-5	0.714	SYNONYMOUS_CODING CG30395 UPSTREAM CR43984
X	21074452	X_21074452_SNP [dm3] X_21203425_SNP [dm6]	G	A	6.158e^-5	0.714	UPSTREAM CG1724 INTERGENIC
2L	4333910	2L_4333910_SNP [dm3] 2L_4333910_SNP [dm6]	A	G	6.173e^-5	0.714	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	20673479	X_20673479_SNP [dm3] X_20802452_SNP [dm6]	A	G	6.207e^-5	0.714	INTRON shakB
3L	10611754	3L_10611754_SNP [dm3] 3L_10618654_SNP [dm6]	T	A	6.249e^-5	0.714	INTERGENIC
2L	13680796	2L_13680796_SNP [dm3] 2L_13680796_SNP [dm6]	T	C	6.298e^-5	0.714	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	3794055	3L_3794055_SNP [dm3] 3L_3794055_SNP [dm6]	C	A	6.359e^-5	0.714	INTRON CG32264
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	6.369e^-5	0.714	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2L	7103758	2L_7103758_SNP [dm3] 2L_7103758_SNP [dm6]	C	T	6.403e^-5	0.714	INTRON Pvf3
3L	3794061	3L_3794061_SNP [dm3] 3L_3794061_SNP [dm6]	A	C	6.468e^-5	0.714	INTRON CG32264
2R	9059716	2R_9059716_SNP [dm3] 2R_13172211_SNP [dm6]	A	T	6.496e^-5	0.714	INTRON AGBE
3L	16413367	3L_16413367_SNP [dm3] 3L_16420267_SNP [dm6]	G	T	6.515e^-5	0.714	SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21074424	X_21074424_SNP [dm3] X_21203397_SNP [dm6]	A	T	6.584e^-5	0.714	UPSTREAM CG1724 INTERGENIC
X	4098997	X_4098997_SNP [dm3] X_4204964_SNP [dm6]	G	A	6.591e^-5	0.714	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3L	15283753	3L_15283753_SNP [dm3] 3L_15290653_SNP [dm6]	G	T	6.635e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15024955	3R_15024955_SNP [dm3] 3R_19199233_SNP [dm6]	T	C	6.656e^-5	0.714	INTRON CG31475
X	4112432	X_4112432_SNP [dm3] X_4218399_SNP [dm6]	G	A	6.676e^-5	0.714	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6822178	3R_6822178_SNP [dm3] 3R_10996456_SNP [dm6]	C	G	6.707e^-5	0.714	INTRON CG34114
3R	20261327	3R_20261327_INS [dm3] 3R_24435605_INS [dm6]	C	CAACC	6.843e^-5	0.714	INTRON nAChRalpha1
2R	11058533	2R_11058533_DEL [dm3] 2R_15171028_DEL [dm6]	CT	C	6.862e^-5	0.714	INTRON igl
3R	9361833	3R_9361833_SNP [dm3] 3R_13536111_SNP [dm6]	A	C	7.023e^-5	0.714	INTERGENIC
3L	3934635	3L_3934635_SNP [dm3] 3L_3934635_SNP [dm6]	C	T	7.093e^-5	0.714	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3R	4388141	3R_4388141_SNP [dm3] 3R_8562419_SNP [dm6]	T	A	7.097e^-5	0.714	SYNONYMOUS_CODING mRpS18A UPSTREAM CG31460 & 1 other DOWNSTREAM CR44291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7050264	2R_7050264_SNP [dm3] 2R_11162759_SNP [dm6]	G	C	7.110e^-5	0.714	INTRON shn & 1 other
X	21155805	X_21155805_INS [dm3] X_21284778_INS [dm6]	A	ATGC	7.122e^-5	0.714	UPSTREAM CG1494 INTERGENIC
X	21155807	X_21155807_INS [dm3] X_21284780_INS [dm6]	A	ATATGC	7.122e^-5	0.714	UPSTREAM CG1494 INTERGENIC
2R	18028270	2R_18028270_SNP [dm3] 2R_22140765_SNP [dm6]	C	T	7.132e^-5	0.714	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15899806	3L_15899806_SNP [dm3] 3L_15906706_SNP [dm6]	G	A	7.210e^-5	0.714	SYNONYMOUS_CODING sff
3R	15025207	3R_15025207_SNP [dm3] 3R_19199485_SNP [dm6]	G	A	7.301e^-5	0.714	INTRON CG31475
X	18815405	X_18815405_SNP [dm3] X_18921372_SNP [dm6]	A	G	7.363e^-5	0.714	INTERGENIC
3L	3719765	3L_3719765_SNP [dm3] 3L_3719765_SNP [dm6]	G	A	7.387e^-5	0.714	INTRON CG32264
X	16899322	X_16899322_SNP [dm3] X_17005289_SNP [dm6]	A	T	7.418e^-5	0.714	INTRON CG45002
3L	17771023	3L_17771023_SNP [dm3] 3L_17777923_SNP [dm6]	A	G	7.418e^-5	0.714	INTERGENIC
2L	20826723	2L_20826723_SNP [dm3] 2L_20826723_SNP [dm6]	T	C	7.430e^-5	0.714	SYNONYMOUS_CODING CG9331
2R	17683213	2R_17683213_INS [dm3] 2R_21795708_INS [dm6]	T	TT	7.469e^-5	0.714	UPSTREAM CG34204 INTERGENIC
3L	15336206	3L_15336206_SNP [dm3] 3L_15343106_SNP [dm6]	A	C	7.489e^-5	0.714	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
3L	18948242	3L_18948242_SNP [dm3] 3L_18955142_SNP [dm6]	A	G	7.523e^-5	0.714	INTRON CG6836
3L	3795146	3L_3795146_SNP [dm3] 3L_3795146_SNP [dm6]	C	A	7.616e^-5	0.714	UPSTREAM CG32264 INTRON CG32264
X	20848954	X_20848954_SNP [dm3] X_20977927_SNP [dm6]	T	A	7.729e^-5	0.714	UPSTREAM CG44426 INTERGENIC
3R	4862001	3R_4862001_SNP [dm3] 3R_9036279_SNP [dm6]	T	A	7.796e^-5	0.714	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17933647	3L_17933647_SNP [dm3] 3L_17940547_SNP [dm6]	T	A	7.921e^-5	0.714	INTRON CG43174
2L	7103845	2L_7103845_DEL [dm3] 2L_7103845_DEL [dm6]	TC	T	7.956e^-5	0.714	INTRON Pvf3
3L	7034702	3L_7034702_SNP [dm3] 3L_7041602_SNP [dm6]	G	T	7.993e^-5	0.714	INTRON Mp	TF binding site mE1_TFBS_inv
3R	13892490	3R_13892490_SNP [dm3] 3R_18066768_SNP [dm6]	A	G	7.997e^-5	0.714	INTERGENIC
2L	5191626	2L_5191626_SNP [dm3] 2L_5191626_SNP [dm6]	A	G	7.997e^-5	0.714	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16619821	X_16619821_SNP [dm3] X_16725788_SNP [dm6]	T	G	8.004e^-5	0.714	INTRON CG32572
3L	325448	3L_325448_SNP [dm3] 3L_325448_SNP [dm6]	A	G	8.127e^-5	0.714	NON_SYNONYMOUS_CODING Atac3 UPSTREAM CG32344	TF binding site mE1_TFBS_HSA
3R	13313635	3R_13313635_SNP [dm3] 3R_17487913_SNP [dm6]	T	A	8.162e^-5	0.714	INTRON Dscam3
3R	25313060	3R_25313060_SNP [dm3] 3R_29487338_SNP [dm6]	A	G	8.303e^-5	0.714	SYNONYMOUS_CODING CG2321 DOWNSTREAM Ptp99A
3R	12106474	3R_12106474_SNP [dm3] 3R_16280752_SNP [dm6]	C	A	8.319e^-5	0.714	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14663360	2R_14663360_SNP [dm3] 2R_18775855_SNP [dm6]	C	T	8.334e^-5	0.714	NON_SYNONYMOUS_CODING CG15093 INTRON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3855744	3L_3855744_SNP [dm3] 3L_3855744_SNP [dm6]	G	A	8.424e^-5	0.714	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3797021	3L_3797021_SNP [dm3] 3L_3797021_SNP [dm6]	C	T	8.500e^-5	0.714	INTRON CG32264
X	21148803	X_21148803_INS [dm3] X_21277776_INS [dm6]	A	ATA	8.562e^-5	0.714	INTRON CG32521
X	21148612	X_21148612_SNP [dm3] X_21277585_SNP [dm6]	T	G	8.636e^-5	0.714	INTRON CG32521
X	15414235	X_15414235_SNP [dm3] X_15520202_SNP [dm6]	A	G	8.682e^-5	0.714	INTRON Ac13E
3L	5284100	3L_5284100_SNP [dm3] 3L_5291000_SNP [dm6]	C	A	8.691e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6926256	2L_6926256_SNP [dm3] 2L_6926256_SNP [dm6]	T	C	8.703e^-5	0.714	UTR_3_PRIME Hrb27C DOWNSTREAM Hrb27C INTRON Hrb27C
X	4100345	X_4100345_SNP [dm3] X_4206312_SNP [dm6]	A	C	8.712e^-5	0.714	UPSTREAM Fas2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11253621	3R_11253621_SNP [dm3] 3R_15427899_SNP [dm6]	C	T	8.775e^-5	0.714	INTRON CG6118
3L	19409633	3L_19409633_SNP [dm3] 3L_19416533_SNP [dm6]	G	A	8.794e^-5	0.714	INTERGENIC
X	20681282	X_20681282_SNP [dm3] X_20810255_SNP [dm6]	T	G	8.798e^-5	0.714	INTRON shakB
X	4112161	X_4112161_SNP [dm3] X_4218128_SNP [dm6]	G	C	8.834e^-5	0.714	UPSTREAM CG15570 & 1 other INTERGENIC
3L	6840228	3L_6840228_SNP [dm3] 3L_6847128_SNP [dm6]	A	G	8.845e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	13892344	3R_13892344_SNP [dm3] 3R_18066622_SNP [dm6]	A	T	8.984e^-5	0.714	INTERGENIC
3R	25155355	3R_25155355_SNP [dm3] 3R_29329633_SNP [dm6]	G	A	9.068e^-5	0.714	INTERGENIC
2R	9057800	2R_9057800_SNP [dm3] 2R_13170295_SNP [dm6]	C	A	9.094e^-5	0.714	INTRON CR45142 & 1 other
3R	9950932	3R_9950932_SNP [dm3] 3R_14125210_SNP [dm6]	G	A	9.116e^-5	0.714	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
2L	7011372	2L_7011372_SNP [dm3] 2L_7011372_SNP [dm6]	G	A	9.122e^-5	0.714	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11621506	3R_11621506_SNP [dm3] 3R_15795784_SNP [dm6]	C	A	9.132e^-5	0.714	NON_SYNONYMOUS_CODING nsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15278006	3R_15278006_SNP [dm3] 3R_19452284_SNP [dm6]	C	T	9.138e^-5	0.714	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	3934588	3L_3934588_SNP [dm3] 3L_3934588_SNP [dm6]	A	T	9.172e^-5	0.714	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2R	16393874	2R_16393874_SNP [dm3] 2R_20506369_SNP [dm6]	G	T	9.172e^-5	0.714	DOWNSTREAM Obp57a EXON CR44644 & 1 other
3R	26301362	3R_26301362_SNP [dm3] 3R_30475640_SNP [dm6]	T	G	9.207e^-5	0.714	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11058541	2R_11058541_SNP [dm3] 2R_15171036_SNP [dm6]	C	G	9.257e^-5	0.714	INTRON igl
3L	5629760	3L_5629760_SNP [dm3] 3L_5636660_SNP [dm6]	C	A	9.277e^-5	0.714	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
X	20844486	X_20844486_SNP [dm3] X_20973459_SNP [dm6]	T	C	9.323e^-5	0.714	INTERGENIC
3R	4400901	3R_4400901_SNP [dm3] 3R_8575179_SNP [dm6]	A	C	9.404e^-5	0.714	INTERGENIC
3R	21331514	3R_21331514_SNP [dm3] 3R_25505792_SNP [dm6]	A	G	9.433e^-5	0.714	SYNONYMOUS_CODING CG5107 UPSTREAM CG5111
2L	4371522	2L_4371522_SNP [dm3] 2L_4371522_SNP [dm6]	T	A	9.453e^-5	0.714	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	23937549	3R_23937549_SNP [dm3] 3R_28111827_SNP [dm6]	A	G	9.531e^-5	0.714	INTERGENIC
X	16426551	X_16426551_SNP [dm3] X_16532518_SNP [dm6]	G	T	9.547e^-5	0.714	INTRON para
3R	21331877	3R_21331877_SNP [dm3] 3R_25506155_SNP [dm6]	A	T	9.572e^-5	0.714	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_inv
X	21074429	X_21074429_INS [dm3] X_21203402_INS [dm6]	A	AG	9.598e^-5	0.714	UPSTREAM CG1724 INTERGENIC
3L	13347482	3L_13347482_SNP [dm3] 3L_13354382_SNP [dm6]	T	A	9.606e^-5	0.714	INTRON CG17687
3L	5648935	3L_5648935_INS [dm3] 3L_5655835_INS [dm6]	C	CGAG	9.680e^-5	0.714	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6449618	3L_6449618_SNP [dm3] 3L_6456518_SNP [dm6]	G	A	9.689e^-5	0.714	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3798224	3L_3798224_SNP [dm3] 3L_3798224_SNP [dm6]	A	C	9.703e^-5	0.714	INTRON CG32264
2R	8929419	2R_8929419_SNP [dm3] 2R_13041914_SNP [dm6]	T	C	9.715e^-5	0.714	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	5262883	3L_5262883_SNP [dm3] 3L_5269783_SNP [dm6]	G	A	9.740e^-5	0.714	INTRON shep
3R	26035427	3R_26035427_SNP [dm3] 3R_30209705_SNP [dm6]	A	T	9.859e^-5	0.714	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	5693504	3L_5693504_SNP [dm3] 3L_5700404_SNP [dm6]	A	G	9.859e^-5	0.714	INTRON sif
3R	13312753	3R_13312753_SNP [dm3] 3R_17487031_SNP [dm6]	C	T	9.888e^-5	0.714	INTRON Dscam3
X	16054789	X_16054789_SNP [dm3] X_16160756_SNP [dm6]	T	G	9.961e^-5	0.714	INTERGENIC
3L	9393298	3L_9393298_SNP [dm3] 3L_9400198_SNP [dm6]	C	A	9.989e^-5	0.714	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18953479	3L_18953479_SNP [dm3] 3L_18960379_SNP [dm6]	C	T	1.005e^-4	0.714	INTERGENIC
2L	3122034	2L_3122034_SNP [dm3] 2L_3122034_SNP [dm6]	C	T	1.013e^-4	0.714	INTRON toc
3L	19497524	3L_19497524_SNP [dm3] 3L_19504424_SNP [dm6]	T	G	1.013e^-4	0.714	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3L	18961712	3L_18961712_SNP [dm3] 3L_18968612_SNP [dm6]	T	C	1.016e^-4	0.714	INTERGENIC
2L	10281939	2L_10281939_SNP [dm3] 2L_10281939_SNP [dm6]	G	T	1.016e^-4	0.714	DOWNSTREAM CG5604 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4875053	3R_4875053_SNP [dm3] 3R_9049331_SNP [dm6]	T	A	1.020e^-4	0.714	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16054824	X_16054824_SNP [dm3] X_16160791_SNP [dm6]	C	T	1.022e^-4	0.714	INTERGENIC
2L	9881551	2L_9881551_SNP [dm3] 2L_9881551_SNP [dm6]	G	A	1.025e^-4	0.714	INTRON nAChRalpha6
3L	5407639	3L_5407639_SNP [dm3] 3L_5414539_SNP [dm6]	C	T	1.027e^-4	0.714	INTERGENIC
3L	3795846	3L_3795846_SNP [dm3] 3L_3795846_SNP [dm6]	A	T	1.034e^-4	0.714	UPSTREAM CG32264 INTRON CG32264
X	4099433	X_4099433_SNP [dm3] X_4205400_SNP [dm6]	T	C	1.055e^-4	0.714	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16413629	3R_16413629_SNP [dm3] 3R_20587907_SNP [dm6]	A	C	1.057e^-4	0.714	UTR_5_PRIME Sep2 UPSTREAM Srp72 INTRON Sep2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20385418	2R_20385418_SNP [dm3] 2R_24497895_SNP [dm6]	A	G	1.059e^-4	0.714	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13060234	3L_13060234_SNP [dm3] 3L_13067134_SNP [dm6]	C	T	1.067e^-4	0.714	INTERGENIC
3R	16414354	3R_16414354_SNP [dm3] 3R_20588632_SNP [dm6]	A	T	1.078e^-4	0.714	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	19871306	X_19871306_SNP [dm3] X_19977273_SNP [dm6]	G	C	1.078e^-4	0.714	INTERGENIC
X	20844895	X_20844895_SNP [dm3] X_20973868_SNP [dm6]	C	A	1.087e^-4	0.714	INTERGENIC
3L	18781149	3L_18781149_SNP [dm3] 3L_18788049_SNP [dm6]	G	T	1.090e^-4	0.714	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9522699	3L_9522699_SNP [dm3] 3L_9529599_SNP [dm6]	T	A	1.098e^-4	0.714	INTRON Or67a
3L	6137743	3L_6137743_SNP [dm3] 3L_6144643_SNP [dm6]	A	G	1.098e^-4	0.714	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3L	18949851	3L_18949851_SNP [dm3] 3L_18956751_SNP [dm6]	C	T	1.105e^-4	0.714	INTERGENIC
3L	4216821	3L_4216821_SNP [dm3] 3L_4216821_SNP [dm6]	G	A	1.111e^-4	0.714	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
3R	18325406	3R_18325406_SNP [dm3] 3R_22499684_SNP [dm6]	A	G	1.117e^-4	0.714	INTRON Octbeta1R
X	8776606	X_8776606_SNP [dm3] X_8882573_SNP [dm6]	T	A	1.117e^-4	0.714	UPSTREAM Moe INTRON Moe
3R	15277948	3R_15277948_SNP [dm3] 3R_19452226_SNP [dm6]	C	A	1.125e^-4	0.714	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	21075776	X_21075776_DEL [dm3] X_21204749_DEL [dm6]	GAA	G	1.126e^-4	0.714	DOWNSTREAM CG32521 INTERGENIC
X	20681288	X_20681288_SNP [dm3] X_20810261_SNP [dm6]	T	G	1.129e^-4	0.714	INTRON shakB
3R	12110363	3R_12110363_INS [dm3] 3R_16284641_INS [dm6]	G	GGTTTACAAC	1.130e^-4	0.714	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10479340	3L_10479340_SNP [dm3] 3L_10486240_SNP [dm6]	G	C	1.130e^-4	0.714	INTRON A2bp1
X	4100743	X_4100743_SNP [dm3] X_4206710_SNP [dm6]	G	C	1.134e^-4	0.714	UPSTREAM Fas2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19050158	X_19050158_SNP [dm3] X_19156125_SNP [dm6]	T	A	1.134e^-4	0.714	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15277903	3R_15277903_SNP [dm3] 3R_19452181_SNP [dm6]	G	T	1.135e^-4	0.714	INTRON CG31221
X	11551607	X_11551607_SNP [dm3] X_11657574_SNP [dm6]	T	C	1.138e^-4	0.714	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2073492	3L_2073492_SNP [dm3] 3L_2073492_SNP [dm6]	T	C	1.142e^-4	0.714	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13215031	X_13215031_INS [dm3] X_13320998_INS [dm6]	T	ATTATCTG	1.142e^-4	0.714	UPSTREAM IP3K2 INTRON IP3K2
2R	14360233	2R_14360233_SNP [dm3] 2R_18472728_SNP [dm6]	T	G	1.144e^-4	0.714	INTRON CG30116
3L	1252949	3L_1252949_SNP [dm3] 3L_1252949_SNP [dm6]	G	A	1.149e^-4	0.714	SYNONYMOUS_CODING CG9130 START_GAINED CG9133 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4331305	2L_4331305_SNP [dm3] 2L_4331305_SNP [dm6]	A	C	1.158e^-4	0.714	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
3L	5650511	3L_5650511_SNP [dm3] 3L_5657411_SNP [dm6]	G	A	1.159e^-4	0.714	UPSTREAM sif DOWNSTREAM lin-28 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23932126	3R_23932126_SNP [dm3] 3R_28106404_SNP [dm6]	C	A	1.162e^-4	0.714	INTERGENIC
X	12431777	X_12431777_SNP [dm3] X_12537744_SNP [dm6]	T	C	1.165e^-4	0.714	INTRON CG43921
3L	13947052	3L_13947052_SNP [dm3] 3L_13953952_SNP [dm6]	A	T	1.165e^-4	0.714	INTRON CG32137
3L	10248886	3L_10248886_SNP [dm3] 3L_10255786_SNP [dm6]	C	T	1.171e^-4	0.714	INTERGENIC
X	21198384	X_21198384_SNP [dm3] X_21327357_SNP [dm6]	C	G	1.178e^-4	0.714	NON_SYNONYMOUS_CODING CG1486
3L	8864803	3L_8864803_SNP [dm3] 3L_8871703_SNP [dm6]	T	G	1.186e^-4	0.714	INTRON dally	TF binding site BDTNP1_TFBS_twi
X	4109158	X_4109158_SNP [dm3] X_4215125_SNP [dm6]	T	A	1.188e^-4	0.714	INTERGENIC
X	4111732	X_4111732_SNP [dm3] X_4217699_SNP [dm6]	A	C	1.191e^-4	0.714	UPSTREAM CG15570 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4855208	3R_4855208_SNP [dm3] 3R_9029486_SNP [dm6]	G	T	1.193e^-4	0.714	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9401582	3R_9401582_SNP [dm3] 3R_13575860_SNP [dm6]	G	C	1.197e^-4	0.714	DOWNSTREAM CR43848 INTERGENIC
2L	5125959	2L_5125959_SNP [dm3] 2L_5125959_SNP [dm6]	C	A	1.197e^-4	0.714	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
3L	1284639	3L_1284639_SNP [dm3] 3L_1284639_SNP [dm6]	T	G	1.210e^-4	0.714	INTRON CG32333
3R	5150686	3R_5150686_SNP [dm3] 3R_9324964_SNP [dm6]	G	A	1.210e^-4	0.714	INTRON CG8861
2R	9040766	2R_9040766_SNP [dm3] 2R_13153261_SNP [dm6]	A	G	1.211e^-4	0.714	SYNONYMOUS_CODING TppII UPSTREAM Ack-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18323508	3R_18323508_SNP [dm3] 3R_22497786_SNP [dm6]	C	G	1.216e^-4	0.714	INTRON Octbeta1R
3R	25807382	3R_25807382_SNP [dm3] 3R_29981660_SNP [dm6]	A	C	1.218e^-4	0.714	INTERGENIC
X	20452192	X_20452192_SNP [dm3] X_20581165_SNP [dm6]	T	A	1.220e^-4	0.714	INTERGENIC
3L	6364669	3L_6364669_SNP [dm3] 3L_6371569_SNP [dm6]	T	C	1.221e^-4	0.714	UPSTREAM CR45419 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7768481	3L_7768481_SNP [dm3] 3L_7775381_SNP [dm6]	T	C	1.223e^-4	0.714	INTRON Clk	regulatory region REDfly_CRMs
3L	4942929	3L_4942929_SNP [dm3] 3L_4942929_SNP [dm6]	C	T	1.224e^-4	0.714	INTRON Con
3R	23893381	3R_23893381_SNP [dm3] 3R_28067659_SNP [dm6]	A	G	1.227e^-4	0.714	INTRON CG34362
2R	16767008	2R_16767008_SNP [dm3] 2R_20879503_SNP [dm6]	A	G	1.228e^-4	0.714	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	16767006	2R_16767006_SNP [dm3] 2R_20879501_SNP [dm6]	G	A	1.230e^-4	0.714	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
3R	18325276	3R_18325276_SNP [dm3] 3R_22499554_SNP [dm6]	T	C	1.241e^-4	0.714	INTRON Octbeta1R
2R	12534460	2R_12534460_SNP [dm3] 2R_16646955_SNP [dm6]	G	C	1.249e^-4	0.714	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21409054	3L_21409054_SNP [dm3] 3L_21415954_SNP [dm6]	A	G	1.251e^-4	0.714	INTRON rgn
3L	6154077	3L_6154077_SNP [dm3] 3L_6160977_SNP [dm6]	G	T	1.254e^-4	0.714	NON_SYNONYMOUS_CODING Cpr65Az
X	5073593	X_5073593_SNP [dm3] X_5179560_SNP [dm6]	G	C	1.257e^-4	0.714	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6750592	3L_6750592_SNP [dm3] 3L_6757492_SNP [dm6]	G	A	1.259e^-4	0.714	UPSTREAM CG10103 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4111604	X_4111604_SNP [dm3] X_4217571_SNP [dm6]	G	A	1.259e^-4	0.714	UPSTREAM CG15570 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7179369	3R_7179369_SNP [dm3] 3R_11353647_SNP [dm6]	G	T	1.262e^-4	0.714	UPSTREAM KP78a & 1 other INTRON pros	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5096748	2R_5096748_SNP [dm3] 2R_9209243_SNP [dm6]	C	T	1.284e^-4	0.714	UTR_3_PRIME VhaAC45
2R	7904417	2R_7904417_INS [dm3] 2R_12016912_INS [dm6]	T	TT	1.285e^-4	0.714	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
2R	19506109	2R_19506109_SNP [dm3] 2R_23618586_SNP [dm6]	T	C	1.285e^-4	0.714	INTERGENIC
X	12432068	X_12432068_SNP [dm3] X_12538035_SNP [dm6]	T	A	1.288e^-4	0.714	INTRON CG43921
3R	10598190	3R_10598190_SNP [dm3] 3R_14772468_SNP [dm6]	A	G	1.295e^-4	0.714	INTRON jvl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3947712	3L_3947712_SNP [dm3] 3L_3947712_SNP [dm6]	T	A	1.297e^-4	0.714	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
2L	16397794	2L_16397794_SNP [dm3] 2L_16397794_SNP [dm6]	G	T	1.298e^-4	0.714	INTERGENIC
3L	21759519	3L_21759519_SNP [dm3] 3L_21766419_SNP [dm6]	G	A	1.299e^-4	0.714	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2698323	2L_2698323_SNP [dm3] 2L_2698323_SNP [dm6]	A	G	1.311e^-4	0.714	INTRON CG31690
3L	8824768	3L_8824768_SNP [dm3] 3L_8831668_SNP [dm6]	G	A	1.316e^-4	0.714	INTRON dally
2L	4378832	2L_4378832_DEL [dm3] 2L_4378832_DEL [dm6]	ACAAAA	A	1.316e^-4	0.714	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	1.318e^-4	0.714	INTRON sty
3L	5693480	3L_5693480_SNP [dm3] 3L_5700380_SNP [dm6]	C	G	1.319e^-4	0.714	INTRON sif
2L	5050624	2L_5050624_SNP [dm3] 2L_5050624_SNP [dm6]	G	T	1.327e^-4	0.714	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2L	16539626	2L_16539626_SNP [dm3] 2L_16539626_SNP [dm6]	G	T	1.334e^-4	0.714	INTERGENIC
3L	1684702	3L_1684702_SNP [dm3] 3L_1684702_SNP [dm6]	T	G	1.336e^-4	0.714	INTRON CG7991
3R	21065531	3R_21065531_SNP [dm3] 3R_25239809_SNP [dm6]	C	T	1.340e^-4	0.714	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
2L	5879124	2L_5879124_SNP [dm3] 2L_5879124_SNP [dm6]	G	T	1.349e^-4	0.714	UTR_5_PRIME rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17795482	3L_17795482_SNP [dm3] 3L_17802382_SNP [dm6]	T	G	1.353e^-4	0.714	UPSTREAM NUCB1 DOWNSTREAM CG5589 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10690312	2L_10690312_DEL [dm3] 2L_10690312_DEL [dm6]	ATCTTA	A	1.359e^-4	0.714	INTERGENIC
3R	13174121	3R_13174121_SNP [dm3] 3R_17348399_SNP [dm6]	T	A	1.363e^-4	0.714	INTRON beat-IIa
X	4913998	X_4913998_SNP [dm3] X_5019965_SNP [dm6]	T	A	1.367e^-4	0.714	INTRON CR44833	regulatory region REDfly_CRMs
3R	15278004	3R_15278004_SNP [dm3] 3R_19452282_SNP [dm6]	G	T	1.375e^-4	0.714	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	5156140	3R_5156140_SNP [dm3] 3R_9330418_SNP [dm6]	C	A	1.375e^-4	0.714	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2L	20814031	2L_20814031_SNP [dm3] 2L_20814031_SNP [dm6]	G	A	1.377e^-4	0.714	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
X	4101033	X_4101033_SNP [dm3] X_4207000_SNP [dm6]	G	C	1.377e^-4	0.714	UPSTREAM Fas2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20013510	X_20013510_SNP [dm3] X_20119477_SNP [dm6]	T	G	1.381e^-4	0.714	INTERGENIC
2R	19836318	2R_19836318_SNP [dm3] 2R_23948795_SNP [dm6]	T	C	1.383e^-4	0.714	UTR_5_PRIME CG13565 UPSTREAM CG2970 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25861981	3R_25861981_SNP [dm3] 3R_30036259_SNP [dm6]	G	A	1.384e^-4	0.714	SYNONYMOUS_CODING CG7928 DOWNSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13214994	X_13214994_INS [dm3] X_13320961_INS [dm6]	A	ATATC	1.389e^-4	0.714	UPSTREAM IP3K2 INTRON IP3K2
2R	9058162	2R_9058162_SNP [dm3] 2R_13170657_SNP [dm6]	T	C	1.392e^-4	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
2R	9058168	2R_9058168_SNP [dm3] 2R_13170663_SNP [dm6]	A	C	1.392e^-4	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
2R	9058171	2R_9058171_DEL [dm3] 2R_13170666_DEL [dm6]	TT	T	1.392e^-4	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
2R	9058174	2R_9058174_SNP [dm3] 2R_13170669_SNP [dm6]	A	T	1.392e^-4	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3L	5421659	3L_5421659_SNP [dm3] 3L_5428559_SNP [dm6]	C	T	1.394e^-4	0.714	INTRON CG34391
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	1.398e^-4	0.714	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2R	9058059	2R_9058059_SNP [dm3] 2R_13170554_SNP [dm6]	C	T	1.400e^-4	0.714	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142
X	4106253	X_4106253_SNP [dm3] X_4212220_SNP [dm6]	A	T	1.401e^-4	0.714	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10611716	3L_10611716_SNP [dm3] 3L_10618616_SNP [dm6]	T	A	1.402e^-4	0.714	INTERGENIC
2L	987293	2L_987293_SNP [dm3] 2L_987293_SNP [dm6]	C	T	1.405e^-4	0.714	DOWNSTREAM CR44801 INTERGENIC
2R	9046026	2R_9046026_SNP [dm3] 2R_13158521_SNP [dm6]	A	G	1.407e^-4	0.714	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	18027483	2R_18027483_SNP [dm3] 2R_22139978_SNP [dm6]	G	A	1.414e^-4	0.714	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
3L	5262905	3L_5262905_SNP [dm3] 3L_5269805_SNP [dm6]	T	A	1.430e^-4	0.714	INTRON shep
2R	9057204	2R_9057204_SNP [dm3] 2R_13169699_SNP [dm6]	G	A	1.435e^-4	0.714	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu
X	21147106	X_21147106_SNP [dm3] X_21276079_SNP [dm6]	A	T	1.442e^-4	0.714	INTRON CG32521
3L	6449559	3L_6449559_SNP [dm3] 3L_6456459_SNP [dm6]	A	C	1.442e^-4	0.714	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
X	11102915	X_11102915_SNP [dm3] X_11208882_SNP [dm6]	C	T	1.444e^-4	0.714	INTERGENIC
3R	15277872	3R_15277872_SNP [dm3] 3R_19452150_SNP [dm6]	A	G	1.446e^-4	0.714	INTRON CG31221
3L	16816623	3L_16816623_SNP [dm3] 3L_16823523_SNP [dm6]	A	G	1.446e^-4	0.714	INTRON CG13024
3L	15971047	3L_15971047_SNP [dm3] 3L_15977947_SNP [dm6]	C	A	1.448e^-4	0.714	UPSTREAM CG17028 INTRON brm & 1 other
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	1.453e^-4	0.714	INTRON bbg
3L	3951613	3L_3951613_SNP [dm3] 3L_3951613_SNP [dm6]	G	A	1.457e^-4	0.714	INTRON CG14984
3R	15277865	3R_15277865_DEL [dm3] 3R_19452143_DEL [dm6]	TT	T	1.459e^-4	0.714	INTRON CG31221
2R	9040187	2R_9040187_SNP [dm3] 2R_13152682_SNP [dm6]	G	C	1.460e^-4	0.714	UPSTREAM Ack-like DOWNSTREAM TppII INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6104265	2R_6104265_SNP [dm3] 2R_10216760_SNP [dm6]	T	C	1.465e^-4	0.714	INTRON Hr46 & 1 other
2R	17587767	2R_17587767_DEL [dm3] 2R_21700262_DEL [dm6]	AAGGAGCT	A	1.467e^-4	0.714	INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17587776	2R_17587776_SNP [dm3] 2R_21700271_SNP [dm6]	G	C	1.467e^-4	0.714	INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17587779	2R_17587779_SNP [dm3] 2R_21700274_SNP [dm6]	A	C	1.467e^-4	0.714	INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15277947	3R_15277947_SNP [dm3] 3R_19452225_SNP [dm6]	G	A	1.469e^-4	0.714	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	20681426	X_20681426_SNP [dm3] X_20810399_SNP [dm6]	T	G	1.471e^-4	0.714	INTRON shakB
X	4105557	X_4105557_SNP [dm3] X_4211524_SNP [dm6]	C	T	1.476e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1015286	2L_1015286_SNP [dm3] 2L_1015286_SNP [dm6]	G	A	1.477e^-4	0.714	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	1.479e^-4	0.714	INTRON gish	TF binding site BDTNP1_TFBS_dl
3R	9401573	3R_9401573_SNP [dm3] 3R_13575851_SNP [dm6]	A	G	1.480e^-4	0.714	DOWNSTREAM CR43848 INTERGENIC
2L	6811099	2L_6811099_SNP [dm3] 2L_6811099_SNP [dm6]	G	T	1.482e^-4	0.714	INTERGENIC
2L	11017403	2L_11017403_SNP [dm3] 2L_11017403_SNP [dm6]	T	C	1.483e^-4	0.714	SYNONYMOUS_CODING CG14913 DOWNSTREAM Acp32CD INTRON Samuel
3L	3951579	3L_3951579_SNP [dm3] 3L_3951579_SNP [dm6]	A	T	1.484e^-4	0.714	INTRON CG14984
3L	11269741	3L_11269741_SNP [dm3] 3L_11276641_SNP [dm6]	T	G	1.486e^-4	0.714	INTERGENIC
2L	6012346	2L_6012346_SNP [dm3] 2L_6012346_SNP [dm6]	A	G	1.489e^-4	0.714	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
X	20368249	X_20368249_DEL [dm3] X_20497222_DEL [dm6]	GTACA	G	1.492e^-4	0.714	INTRON RhoGAP19D
3L	11367974	3L_11367974_SNP [dm3] 3L_11374874_SNP [dm6]	T	A	1.495e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	5096637	3L_5096637_SNP [dm3] 3L_5096637_SNP [dm6]	C	A	1.496e^-4	0.714	INTERGENIC
3R	14303678	3R_14303678_SNP [dm3] 3R_18477956_SNP [dm6]	T	C	1.497e^-4	0.714	INTRON fru
3R	9324991	3R_9324991_SNP [dm3] 3R_13499269_SNP [dm6]	C	T	1.497e^-4	0.714	INTERGENIC
2R	15723868	2R_15723868_SNP [dm3] 2R_19836363_SNP [dm6]	G	A	1.498e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12106268	3R_12106268_SNP [dm3] 3R_16280546_SNP [dm6]	T	A	1.512e^-4	0.714	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4216504	3L_4216504_SNP [dm3] 3L_4216504_SNP [dm6]	T	A	1.514e^-4	0.714	DOWNSTREAM Cpr64Ad INTRON CG43367
3L	13374256	3L_13374256_SNP [dm3] 3L_13381156_SNP [dm6]	C	T	1.517e^-4	0.714	NON_SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18876646	3R_18876646_SNP [dm3] 3R_23050924_SNP [dm6]	G	A	1.518e^-4	0.714	SYNONYMOUS_CODING p53 UPSTREAM Gr94a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11122307	3L_11122307_SNP [dm3] 3L_11129207_SNP [dm6]	T	C	1.520e^-4	0.714	UTR_5_PRIME CG42575 UPSTREAM CG42575
3L	3627436	3L_3627436_SNP [dm3] 3L_3627436_SNP [dm6]	A	G	1.520e^-4	0.714	INTRON dar1
2R	17685111	2R_17685111_SNP [dm3] 2R_21797606_SNP [dm6]	G	A	1.534e^-4	0.714	DOWNSTREAM CG34204 & 1 other INTERGENIC
3L	1375879	3L_1375879_SNP [dm3] 3L_1375879_SNP [dm6]	G	A	1.537e^-4	0.714	INTRON Ptp61F & 1 other
X	4109996	X_4109996_SNP [dm3] X_4215963_SNP [dm6]	C	T	1.537e^-4	0.714	DOWNSTREAM CG15571 INTERGENIC
2R	9058642	2R_9058642_INS [dm3] 2R_13171137_INS [dm6]	C	CC	1.538e^-4	0.714	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad
2R	9058649	2R_9058649_SNP [dm3] 2R_13171144_SNP [dm6]	C	T	1.538e^-4	0.714	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_cad
2L	16563015	2L_16563015_DEL [dm3] 2L_16563015_DEL [dm6]	GCCCCCCTC	A	1.540e^-4	0.714	INTRON CG42389
3R	15795446	3R_15795446_SNP [dm3] 3R_19969724_SNP [dm6]	T	G	1.544e^-4	0.714	INTRON Hs6st
X	8890204	X_8890204_SNP [dm3] X_8996171_SNP [dm6]	T	A	1.544e^-4	0.714	INTRON rdgA & 1 other
3R	12110409	3R_12110409_SNP [dm3] 3R_16284687_SNP [dm6]	C	G	1.550e^-4	0.714	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14524363	3L_14524363_SNP [dm3] 3L_14531263_SNP [dm6]	T	A	1.555e^-4	0.714	INTRON bbg
X	21148637	X_21148637_SNP [dm3] X_21277610_SNP [dm6]	T	G	1.563e^-4	0.714	INTRON CG32521
3R	21268126	3R_21268126_SNP [dm3] 3R_25442404_SNP [dm6]	G	A	1.567e^-4	0.714	INTRON Fur1	TF binding site mE1_TFBS_Kr
3R	13811183	3R_13811183_SNP [dm3] 3R_17985461_SNP [dm6]	T	C	1.573e^-4	0.714	INTRON cpo
2L	11882120	2L_11882120_SNP [dm3] 2L_11882120_SNP [dm6]	G	T	1.575e^-4	0.714	INTRON Pde1c
3R	12110307	3R_12110307_SNP [dm3] 3R_16284585_SNP [dm6]	C	A	1.582e^-4	0.714	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25144965	3R_25144965_SNP [dm3] 3R_29319243_SNP [dm6]	C	G	1.582e^-4	0.714	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	16814274	X_16814274_SNP [dm3] X_16920241_SNP [dm6]	A	T	1.587e^-4	0.714	INTRON CG4928
3L	14081059	3L_14081059_SNP [dm3] 3L_14087959_SNP [dm6]	C	A	1.590e^-4	0.714	INTERGENIC
2R	14663523	2R_14663523_SNP [dm3] 2R_18776018_SNP [dm6]	G	A	1.592e^-4	0.714	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2073447	3L_2073447_SNP [dm3] 3L_2073447_SNP [dm6]	G	A	1.596e^-4	0.714	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18007087	2R_18007087_SNP [dm3] 2R_22119582_SNP [dm6]	T	C	1.598e^-4	0.714	INTRON Vrp1
2L	6424110	2L_6424110_SNP [dm3] 2L_6424110_SNP [dm6]	G	A	1.601e^-4	0.714	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11180426	2R_11180426_SNP [dm3] 2R_15292921_SNP [dm6]	G	A	1.605e^-4	0.714	UTR_5_PRIME Trpm INTRON Trpm
3L	10800476	3L_10800476_SNP [dm3] 3L_10807376_SNP [dm6]	C	T	1.605e^-4	0.714	INTERGENIC
3L	13347495	3L_13347495_SNP [dm3] 3L_13354395_SNP [dm6]	T	A	1.607e^-4	0.714	INTRON CG17687
2R	9014531	2R_9014531_SNP [dm3] 2R_13127026_SNP [dm6]	T	C	1.609e^-4	0.714	DOWNSTREAM CG3955 INTERGENIC
2L	3122177	2L_3122177_SNP [dm3] 2L_3122177_SNP [dm6]	G	A	1.613e^-4	0.714	INTRON toc
2R	9057674	2R_9057674_SNP [dm3] 2R_13170169_SNP [dm6]	G	C	1.617e^-4	0.714	NON_SYNONYMOUS_CODING Spt-I EXON CR45142
2L	13080785	2L_13080785_SNP [dm3] 2L_13080785_SNP [dm6]	C	A	1.619e^-4	0.714	INTERGENIC
3L	19067658	3L_19067658_SNP [dm3] 3L_19074558_SNP [dm6]	A	T	1.624e^-4	0.714	INTRON Mkp3
3L	3938252	3L_3938252_DEL [dm3] 3L_3938252_DEL [dm6]	AA	A	1.629e^-4	0.715	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
2R	9427492	2R_9427492_SNP [dm3] 2R_13539987_SNP [dm6]	A	G	1.647e^-4	0.716	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3690310	2L_3690310_SNP [dm3] 2L_3690310_SNP [dm6]	A	G	1.657e^-4	0.716	INTRON CG34340
2L	11557077	2L_11557077_SNP [dm3] 2L_11557077_SNP [dm6]	G	C	1.660e^-4	0.716	INTERGENIC
2L	6424111	2L_6424111_SNP [dm3] 2L_6424111_SNP [dm6]	A	T	1.663e^-4	0.716	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5686074	3L_5686074_SNP [dm3] 3L_5692974_SNP [dm6]	T	G	1.663e^-4	0.716	INTRON sif
3L	5687431	3L_5687431_SNP [dm3] 3L_5694331_SNP [dm6]	G	A	1.663e^-4	0.716	INTRON sif
X	8315103	X_8315103_SNP [dm3] X_8421070_SNP [dm6]	T	C	1.665e^-4	0.716	UPSTREAM Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15414375	X_15414375_SNP [dm3] X_15520342_SNP [dm6]	G	A	1.666e^-4	0.716	INTRON Ac13E
3L	5685408	3L_5685408_SNP [dm3] 3L_5692308_SNP [dm6]	G	T	1.667e^-4	0.716	INTRON sif
3R	23933388	3R_23933388_SNP [dm3] 3R_28107666_SNP [dm6]	C	T	1.682e^-4	0.716	INTERGENIC
3R	4388078	3R_4388078_SNP [dm3] 3R_8562356_SNP [dm6]	G	T	1.684e^-4	0.716	UPSTREAM CG31460 & 1 other DOWNSTREAM CR44291 INTRON mRpS18A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5643447	3L_5643447_SNP [dm3] 3L_5650347_SNP [dm6]	A	T	1.696e^-4	0.716	UTR_3_PRIME Blimp-1
3R	23369115	3R_23369115_SNP [dm3] 3R_27543393_SNP [dm6]	A	C	1.697e^-4	0.716	INTRON Gr98b
3L	5407524	3L_5407524_SNP [dm3] 3L_5414424_SNP [dm6]	T	C	1.699e^-4	0.716	INTERGENIC
X	20368177	X_20368177_SNP [dm3] X_20497150_SNP [dm6]	C	A	1.703e^-4	0.716	INTRON RhoGAP19D
3R	18457570	3R_18457570_SNP [dm3] 3R_22631848_SNP [dm6]	G	A	1.703e^-4	0.716	INTRON loco	regulatory region REDfly_CRMs
X	20674196	X_20674196_DEL [dm3] X_20803169_DEL [dm6]	GG	G	1.710e^-4	0.716	INTRON shakB
2R	18027484	2R_18027484_SNP [dm3] 2R_22139979_SNP [dm6]	A	G	1.716e^-4	0.716	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
2R	11058545	2R_11058545_SNP [dm3] 2R_15171040_SNP [dm6]	G	T	1.719e^-4	0.716	INTRON igl
3L	7098177	3L_7098177_SNP [dm3] 3L_7105077_SNP [dm6]	T	A	1.722e^-4	0.716	INTRON form3
3L	3794054	3L_3794054_SNP [dm3] 3L_3794054_SNP [dm6]	T	A	1.727e^-4	0.716	INTRON CG32264
X	4100350	X_4100350_SNP [dm3] X_4206317_SNP [dm6]	G	T	1.729e^-4	0.716	UPSTREAM Fas2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11306833	3R_11306833_SNP [dm3] 3R_15481111_SNP [dm6]	C	T	1.731e^-4	0.716	UPSTREAM CG14870 INTERGENIC
X	18832819	X_18832819_SNP [dm3] X_18938786_SNP [dm6]	T	G	1.732e^-4	0.716	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	16336139	3L_16336139_SNP [dm3] 3L_16343039_SNP [dm6]	T	C	1.734e^-4	0.716	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
X	16054794	X_16054794_SNP [dm3] X_16160761_SNP [dm6]	A	T	1.737e^-4	0.716	INTERGENIC
3R	15589638	3R_15589638_SNP [dm3] 3R_19763916_SNP [dm6]	T	G	1.739e^-4	0.716	INTRON GluClalpha
3L	2002367	3L_2002367_SNP [dm3] 3L_2002367_SNP [dm6]	C	A	1.741e^-4	0.716	DOWNSTREAM CG42841 INTERGENIC
3L	10921289	3L_10921289_SNP [dm3] 3L_10928189_SNP [dm6]	G	T	1.745e^-4	0.716	INTERGENIC
X	21146103	X_21146103_SNP [dm3] X_21275076_SNP [dm6]	T	A	1.767e^-4	0.716	INTRON CG32521
X	21146104	X_21146104_SNP [dm3] X_21275077_SNP [dm6]	A	T	1.767e^-4	0.716	INTRON CG32521
3L	3947717	3L_3947717_SNP [dm3] 3L_3947717_SNP [dm6]	T	A	1.768e^-4	0.716	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
3L	9693596	3L_9693596_SNP [dm3] 3L_9700496_SNP [dm6]	T	A	1.774e^-4	0.716	DOWNSTREAM CG6761 & 1 other INTERGENIC
2L	20867476	2L_20867476_SNP [dm3] 2L_20867476_SNP [dm6]	G	A	1.785e^-4	0.716	UTR_3_PRIME CG9338 UPSTREAM CG31675 DOWNSTREAM CG9338	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6235392	2L_6235392_SNP [dm3] 2L_6235392_SNP [dm6]	C	G	1.787e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4384423	2L_4384423_SNP [dm3] 2L_4384423_SNP [dm6]	T	C	1.790e^-4	0.716	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
3R	9090619	3R_9090619_SNP [dm3] 3R_13264897_SNP [dm6]	C	A	1.806e^-4	0.716	NON_SYNONYMOUS_CODING Su_var_3-7 UPSTREAM Ravus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	4106187	X_4106187_SNP [dm3] X_4212154_SNP [dm6]	G	A	1.813e^-4	0.716	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5323158	X_5323158_SNP [dm3] X_5429125_SNP [dm6]	T	A	1.821e^-4	0.716	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
3L	16409660	3L_16409660_SNP [dm3] 3L_16416560_SNP [dm6]	G	A	1.823e^-4	0.716	SYNONYMOUS_CODING CG4573 DOWNSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14391255	3R_14391255_SNP [dm3] 3R_18565533_SNP [dm6]	A	T	1.824e^-4	0.716	UPSTREAM CG43210 & 1 other INTERGENIC
2L	4371506	2L_4371506_SNP [dm3] 2L_4371506_SNP [dm6]	G	T	1.836e^-4	0.716	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	17596512	2R_17596512_SNP [dm3] 2R_21709007_SNP [dm6]	A	T	1.838e^-4	0.716	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6454833	2L_6454833_SNP [dm3] 2L_6454833_SNP [dm6]	C	T	1.840e^-4	0.716	INTRON retm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	23060821	3L_23060821_SNP [dm3] 3L_23067721_SNP [dm6]	A	C	1.844e^-4	0.716	INTERGENIC	transposable element FlyBase
2R	7362846	2R_7362846_SNP [dm3] 2R_11475341_SNP [dm6]	T	A	1.844e^-4	0.716	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4371790	3L_4371790_INS [dm3] 3L_4371790_INS [dm6]	A	AT	1.847e^-4	0.716	UTR_5_PRIME DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	8776588	X_8776588_SNP [dm3] X_8882555_SNP [dm6]	T	C	1.858e^-4	0.716	UPSTREAM Moe INTRON Moe
X	11182188	X_11182188_SNP [dm3] X_11288155_SNP [dm6]	G	C	1.860e^-4	0.716	INTRON CG44422
3R	26039998	3R_26039998_SNP [dm3] 3R_30214276_SNP [dm6]	A	G	1.867e^-4	0.716	UPSTREAM CecB INTERGENIC
2R	19941719	2R_19941719_SNP [dm3] 2R_24054196_SNP [dm6]	A	T	1.872e^-4	0.716	SPLICE_SITE_REGION ppk29 INTRON ppk29
3L	7098186	3L_7098186_SNP [dm3] 3L_7105086_SNP [dm6]	A	T	1.874e^-4	0.716	INTRON form3
3L	3796970	3L_3796970_SNP [dm3] 3L_3796970_SNP [dm6]	T	G	1.887e^-4	0.716	INTRON CG32264
2L	7011787	2L_7011787_SNP [dm3] 2L_7011787_SNP [dm6]	C	G	1.888e^-4	0.716	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	4106070	X_4106070_INS [dm3] X_4212037_INS [dm6]	T	TGCTTTAGCG	1.897e^-4	0.716	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2605345	3L_2605345_SNP [dm3] 3L_2605345_SNP [dm6]	G	C	1.900e^-4	0.716	INTRON Pxn
3L	10644927	3L_10644927_SNP [dm3] 3L_10651827_SNP [dm6]	T	G	1.902e^-4	0.716	INTRON CG32066
3R	21212298	3R_21212298_SNP [dm3] 3R_25386576_SNP [dm6]	G	A	1.902e^-4	0.716	INTRON Fur1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5999946	3L_5999946_SNP [dm3] 3L_6006846_SNP [dm6]	G	A	1.904e^-4	0.716	INTRON PVRAP
3R	13734203	3R_13734203_SNP [dm3] 3R_17908481_SNP [dm6]	T	C	1.911e^-4	0.716	INTRON Rim
3L	5331945	3L_5331945_SNP [dm3] 3L_5338845_SNP [dm6]	G	C	1.913e^-4	0.716	INTERGENIC
X	14890226	X_14890226_SNP [dm3] X_14996193_SNP [dm6]	G	T	1.916e^-4	0.716	SYNONYMOUS_CODING eag
3L	7034717	3L_7034717_SNP [dm3] 3L_7041617_SNP [dm6]	T	A	1.921e^-4	0.716	INTRON Mp	TF binding site mE1_TFBS_inv
2L	3849641	2L_3849641_SNP [dm3] 2L_3849641_SNP [dm6]	A	G	1.928e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3151820	2L_3151820_SNP [dm3] 2L_3151820_SNP [dm6]	G	A	1.929e^-4	0.716	INTRON Mad
2L	9982199	2L_9982199_SNP [dm3] 2L_9982199_SNP [dm6]	G	A	1.938e^-4	0.716	INTERGENIC
X	4109010	X_4109010_SNP [dm3] X_4214977_SNP [dm6]	T	C	1.942e^-4	0.716	INTERGENIC
2R	16287371	2R_16287371_SNP [dm3] 2R_20399866_SNP [dm6]	G	A	1.943e^-4	0.716	INTERGENIC
2L	20867914	2L_20867914_SNP [dm3] 2L_20867914_SNP [dm6]	G	C	1.946e^-4	0.716	UTR_5_PRIME CG31675 DOWNSTREAM CG9338
3L	12958675	3L_12958675_SNP [dm3] 3L_12965575_SNP [dm6]	G	T	1.951e^-4	0.716	SYNONYMOUS_CODING Or69a INTRON Or69a
2L	9413562	2L_9413562_SNP [dm3] 2L_9413562_SNP [dm6]	T	C	1.956e^-4	0.716	INTRON Shawl
3L	5569531	3L_5569531_SNP [dm3] 3L_5576431_SNP [dm6]	C	A	1.966e^-4	0.716	INTRON Msr-110
3R	15024950	3R_15024950_SNP [dm3] 3R_19199228_SNP [dm6]	C	A	1.981e^-4	0.716	INTRON CG31475
2L	13127588	2L_13127588_SNP [dm3] 2L_13127588_SNP [dm6]	C	T	1.982e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13127601	2L_13127601_SNP [dm3] 2L_13127601_SNP [dm6]	A	C	1.982e^-4	0.716	INTERGENIC
3R	26079872	3R_26079872_SNP [dm3] 3R_30254150_SNP [dm6]	G	A	1.982e^-4	0.716	DOWNSTREAM CG18404 INTERGENIC
2R	12134699	2R_12134699_SNP [dm3] 2R_16247194_SNP [dm6]	C	A	1.983e^-4	0.716	INTRON CngA
2L	6486608	2L_6486608_SNP [dm3] 2L_6486608_SNP [dm6]	A	G	1.985e^-4	0.716	SYNONYMOUS_CODING DLP DOWNSTREAM KFase
3L	3783134	3L_3783134_SNP [dm3] 3L_3783134_SNP [dm6]	G	T	1.986e^-4	0.716	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10479314	3L_10479314_INS [dm3] 3L_10486214_INS [dm6]	A	ACTAT	1.994e^-4	0.716	INTRON A2bp1
3R	15024941	3R_15024941_DEL [dm3] 3R_19199219_DEL [dm6]	GCTGT	G	1.994e^-4	0.716	INTRON CG31475
3R	15024953	3R_15024953_SNP [dm3] 3R_19199231_SNP [dm6]	C	T	1.994e^-4	0.716	INTRON CG31475
3R	15024957	3R_15024957_SNP [dm3] 3R_19199235_SNP [dm6]	C	T	1.994e^-4	0.716	INTRON CG31475
X	22098069	X_22098069_SNP [dm3] X_22696233_SNP [dm6]	G	A	1.995e^-4	0.716	INTRON CR44997
X	13351286	X_13351286_SNP [dm3] X_13457253_SNP [dm6]	A	T	2.002e^-4	0.716	SYNONYMOUS_CODING CG34324 INTRON Neto	TF binding site mE1_TFBS_chinmo
X	20151799	X_20151799_SNP [dm3] X_20280772_SNP [dm6]	G	T	2.011e^-4	0.716	INTERGENIC
3R	13810962	3R_13810962_SNP [dm3] 3R_17985240_SNP [dm6]	A	T	2.015e^-4	0.716	INTRON cpo
2R	11058530	2R_11058530_SNP [dm3] 2R_15171025_SNP [dm6]	A	T	2.016e^-4	0.716	INTRON igl
2R	18025831	2R_18025831_SNP [dm3] 2R_22138326_SNP [dm6]	A	G	2.017e^-4	0.716	UPSTREAM CG11269 INTRON a
X	16054734	X_16054734_SNP [dm3] X_16160701_SNP [dm6]	A	G	2.030e^-4	0.716	INTERGENIC
3L	18559030	3L_18559030_SNP [dm3] 3L_18565930_SNP [dm6]	G	A	2.036e^-4	0.716	INTRON AstC-R1
2R	10029374	2R_10029374_DEL [dm3] 2R_14141869_DEL [dm6]	TT	T	2.036e^-4	0.716	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	5261372	2L_5261372_SNP [dm3] 2L_5261372_SNP [dm6]	T	C	2.038e^-4	0.716	INTRON tkv
3L	18962220	3L_18962220_DEL [dm3] 3L_18969120_DEL [dm6]	TATACTTATATGT...	T	2.038e^-4	0.716	INTERGENIC
2L	7056174	2L_7056174_SNP [dm3] 2L_7056174_SNP [dm6]	G	T	2.043e^-4	0.716	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
X	8776585	X_8776585_SNP [dm3] X_8882552_SNP [dm6]	A	G	2.048e^-4	0.716	UPSTREAM Moe INTRON Moe
3L	15336118	3L_15336118_SNP [dm3] 3L_15343018_SNP [dm6]	A	C	2.054e^-4	0.716	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
X	21156074	X_21156074_SNP [dm3] X_21285047_SNP [dm6]	G	A	2.060e^-4	0.716	UPSTREAM CG1494 INTERGENIC
X	8401425	X_8401425_SNP [dm3] X_8507392_SNP [dm6]	A	C	2.064e^-4	0.716	INTRON CG33181	TF binding site mE1_TFBS_inv
2R	6530971	2R_6530971_SNP [dm3] 2R_10643466_SNP [dm6]	G	A	2.069e^-4	0.716	SYNONYMOUS_CODING Git	TF binding site mE1_TFBS_HSA
2R	18926134	2R_18926134_SNP [dm3] 2R_23038611_SNP [dm6]	A	C	2.071e^-4	0.716	INTRON twi & 1 other
X	8315109	X_8315109_SNP [dm3] X_8421076_SNP [dm6]	G	C	2.075e^-4	0.716	UPSTREAM Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10972885	3L_10972885_SNP [dm3] 3L_10979785_SNP [dm6]	A	C	2.076e^-4	0.716	INTERGENIC
3L	3951576	3L_3951576_SNP [dm3] 3L_3951576_SNP [dm6]	T	A	2.077e^-4	0.716	INTRON CG14984
2R	13945475	2R_13945475_SNP [dm3] 2R_18057970_SNP [dm6]	C	A	2.078e^-4	0.716	UPSTREAM CG10912 EXON CR45314
X	4112042	X_4112042_SNP [dm3] X_4218009_SNP [dm6]	T	A	2.079e^-4	0.716	UPSTREAM CG15570 & 1 other INTERGENIC
3R	25310758	3R_25310758_SNP [dm3] 3R_29485036_SNP [dm6]	T	C	2.080e^-4	0.716	UTR_3_PRIME Ptp99A & 1 other DOWNSTREAM Ptp99A
2R	6390474	2R_6390474_SNP [dm3] 2R_10502969_SNP [dm6]	T	G	2.080e^-4	0.716	INTRON lola
3L	3812511	3L_3812511_SNP [dm3] 3L_3812511_SNP [dm6]	T	C	2.082e^-4	0.716	SYNONYMOUS_CODING CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17772669	3L_17772669_SNP [dm3] 3L_17779569_SNP [dm6]	G	A	2.082e^-4	0.716	INTERGENIC
3L	17448452	3L_17448452_SNP [dm3] 3L_17455352_SNP [dm6]	G	T	2.083e^-4	0.716	UTR_3_PRIME CG18265 DOWNSTREAM CG18265
3R	9013020	3R_9013020_SNP [dm3] 3R_13187298_SNP [dm6]	G	T	2.085e^-4	0.716	UPSTREAM CG8508 INTERGENIC
2R	18955915	2R_18955915_SNP [dm3] 2R_23068392_SNP [dm6]	G	A	2.088e^-4	0.716	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
2L	9605960	2L_9605960_SNP [dm3] 2L_9605960_SNP [dm6]	T	C	2.089e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6235364	2L_6235364_SNP [dm3] 2L_6235364_SNP [dm6]	A	T	2.093e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	12830148	2L_12830148_SNP [dm3] 2L_12830148_SNP [dm6]	T	C	2.097e^-4	0.716	INTERGENIC
3L	3951612	3L_3951612_SNP [dm3] 3L_3951612_SNP [dm6]	A	C	2.101e^-4	0.716	INTRON CG14984
3L	4792626	3L_4792626_SNP [dm3] 3L_4792626_SNP [dm6]	C	T	2.102e^-4	0.716	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	21075738	X_21075738_SNP [dm3] X_21204711_SNP [dm6]	G	A	2.103e^-4	0.716	DOWNSTREAM CG32521 INTERGENIC
3L	5656843	3L_5656843_SNP [dm3] 3L_5663743_SNP [dm6]	C	A	2.104e^-4	0.716	INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10479490	3L_10479490_SNP [dm3] 3L_10486390_SNP [dm6]	A	C	2.117e^-4	0.716	INTRON A2bp1
3L	1898899	3L_1898899_SNP [dm3] 3L_1898899_SNP [dm6]	T	C	2.122e^-4	0.716	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	16566920	2R_16566920_SNP [dm3] 2R_20679415_SNP [dm6]	G	A	2.126e^-4	0.716	INTERGENIC
X	18483308	X_18483308_SNP [dm3] X_18589275_SNP [dm6]	C	T	2.128e^-4	0.716	INTERGENIC
2L	6840795	2L_6840795_SNP [dm3] 2L_6840795_SNP [dm6]	C	T	2.135e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12110366	3R_12110366_SNP [dm3] 3R_16284644_SNP [dm6]	G	A	2.137e^-4	0.716	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18952071	3L_18952071_SNP [dm3] 3L_18958971_SNP [dm6]	T	C	2.138e^-4	0.716	INTERGENIC
2L	7309652	2L_7309652_SNP [dm3] 2L_7309652_SNP [dm6]	G	T	2.139e^-4	0.716	INTRON wg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	12108683	3R_12108683_SNP [dm3] 3R_16282961_SNP [dm6]	A	T	2.141e^-4	0.716	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
2R	17136545	2R_17136545_DEL [dm3] 2R_21249040_DEL [dm6]	AA	A	2.143e^-4	0.716	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11269720	3L_11269720_SNP [dm3] 3L_11276620_SNP [dm6]	T	C	2.145e^-4	0.716	INTERGENIC
3L	1950283	3L_1950283_SNP [dm3] 3L_1950283_SNP [dm6]	A	T	2.147e^-4	0.716	DOWNSTREAM mv & 1 other INTERGENIC
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	2.160e^-4	0.716	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18027963	2R_18027963_SNP [dm3] 2R_22140458_SNP [dm6]	G	T	2.161e^-4	0.716	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
X	21075771	X_21075771_SNP [dm3] X_21204744_SNP [dm6]	T	C	2.166e^-4	0.716	DOWNSTREAM CG32521 INTERGENIC
2R	16287079	2R_16287079_SNP [dm3] 2R_20399574_SNP [dm6]	T	G	2.170e^-4	0.716	INTERGENIC
X	12431568	X_12431568_SNP [dm3] X_12537535_SNP [dm6]	G	T	2.171e^-4	0.716	INTRON CG43921
3L	11116684	3L_11116684_SNP [dm3] 3L_11123584_SNP [dm6]	C	T	2.177e^-4	0.716	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7011346	2L_7011346_SNP [dm3] 2L_7011346_SNP [dm6]	G	A	2.178e^-4	0.716	UPSTREAM uif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	5426743	3L_5426743_SNP [dm3] 3L_5433643_SNP [dm6]	G	A	2.184e^-4	0.716	INTRON CG34391
3R	9400403	3R_9400403_SNP [dm3] 3R_13574681_SNP [dm6]	T	A	2.192e^-4	0.716	UPSTREAM CR43848 INTERGENIC
2L	10344239	2L_10344239_SNP [dm3] 2L_10344239_SNP [dm6]	C	T	2.197e^-4	0.716	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3940779	3L_3940779_SNP [dm3] 3L_3940779_SNP [dm6]	C	G	2.199e^-4	0.716	UPSTREAM CG12766 DOWNSTREAM CG10863 INTRON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	2.201e^-4	0.716	INTERGENIC
2R	9264338	2R_9264338_SNP [dm3] 2R_13376833_SNP [dm6]	G	A	2.205e^-4	0.716	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
3R	9000240	3R_9000240_SNP [dm3] 3R_13174518_SNP [dm6]	G	T	2.210e^-4	0.716	INTERGENIC
X	20681419	X_20681419_SNP [dm3] X_20810392_SNP [dm6]	A	G	2.212e^-4	0.716	INTRON shakB
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	2.214e^-4	0.716	INTERGENIC	silencer mE1_HDAC_PRE
2L	13717053	2L_13717053_SNP [dm3] 2L_13717053_SNP [dm6]	G	A	2.215e^-4	0.716	UTR_5_PRIME CG31814
X	20453149	X_20453149_SNP [dm3] X_20582122_SNP [dm6]	A	G	2.223e^-4	0.716	INTERGENIC
2L	2931956	2L_2931956_INS [dm3] 2L_2931956_INS [dm6]	C	CAAACATAATGAACACC...	2.228e^-4	0.716	INTRON lilli
X	4112918	X_4112918_SNP [dm3] X_4218885_SNP [dm6]	T	C	2.234e^-4	0.716	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12836707	3R_12836707_SNP [dm3] 3R_17010985_SNP [dm6]	T	G	2.245e^-4	0.716	INTRON CG8907
3L	5315477	3L_5315477_SNP [dm3] 3L_5322377_SNP [dm6]	G	A	2.246e^-4	0.716	INTERGENIC
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	2.247e^-4	0.716	INTERGENIC
2R	16393908	2R_16393908_SNP [dm3] 2R_20506403_SNP [dm6]	T	A	2.258e^-4	0.716	UPSTREAM CR44644 DOWNSTREAM Obp57a EXON CR44645
2L	4377296	2L_4377296_SNP [dm3] 2L_4377296_SNP [dm6]	C	T	2.263e^-4	0.716	INTRON Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4216549	3L_4216549_SNP [dm3] 3L_4216549_SNP [dm6]	T	A	2.263e^-4	0.716	DOWNSTREAM Cpr64Ad INTRON CG43367
X	21145477	X_21145477_SNP [dm3] X_21274450_SNP [dm6]	A	G	2.282e^-4	0.716	INTRON CG32521
X	17287387	X_17287387_SNP [dm3] X_17393354_SNP [dm6]	A	T	2.284e^-4	0.716	INTERGENIC
2R	9351053	2R_9351053_SNP [dm3] 2R_13463548_SNP [dm6]	G	C	2.286e^-4	0.716	INTRON arr
X	9874993	X_9874993_SNP [dm3] X_9980960_SNP [dm6]	A	T	2.294e^-4	0.716	UPSTREAM CG15252 INTERGENIC	TF binding site mE1_TFBS_HSA
X	5073490	X_5073490_SNP [dm3] X_5179457_SNP [dm6]	A	G	2.305e^-4	0.716	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	4634745	3R_4634745_SNP [dm3] 3R_8809023_SNP [dm6]	A	T	2.309e^-4	0.716	UTR_3_PRIME CG9837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15280764	2L_15280764_SNP [dm3] 2L_15280764_SNP [dm6]	A	G	2.311e^-4	0.716	DOWNSTREAM CR45349 INTERGENIC
X	20396944	X_20396944_SNP [dm3] X_20525917_SNP [dm6]	G	A	2.314e^-4	0.716	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
2L	7295741	2L_7295741_SNP [dm3] 2L_7295741_SNP [dm6]	C	T	2.318e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8602731	X_8602731_SNP [dm3] X_8708698_SNP [dm6]	T	C	2.318e^-4	0.716	UPSTREAM CR44507 & 1 other DOWNSTREAM CR44508 INTERGENIC
3L	5518756	3L_5518756_SNP [dm3] 3L_5525656_SNP [dm6]	C	T	2.319e^-4	0.716	INTRON Lkr
X	5223693	X_5223693_SNP [dm3] X_5329660_SNP [dm6]	T	C	2.320e^-4	0.716	UPSTREAM XRCC1 & 1 other INTERGENIC
2L	14303680	2L_14303680_SNP [dm3] 2L_14303680_SNP [dm6]	A	T	2.323e^-4	0.716	INTRON wb	TF binding site mE1_TFBS_inv
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	2.332e^-4	0.716	INTRON gish
2L	6741358	2L_6741358_SNP [dm3] 2L_6741358_SNP [dm6]	C	G	2.336e^-4	0.716	INTERGENIC
3R	25289123	3R_25289123_SNP [dm3] 3R_29463401_SNP [dm6]	T	G	2.337e^-4	0.716	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	5693474	3L_5693474_SNP [dm3] 3L_5700374_SNP [dm6]	C	T	2.337e^-4	0.716	INTRON sif
X	16054606	X_16054606_SNP [dm3] X_16160573_SNP [dm6]	T	A	2.342e^-4	0.716	INTERGENIC
3R	25807254	3R_25807254_SNP [dm3] 3R_29981532_SNP [dm6]	G	A	2.344e^-4	0.716	INTERGENIC
2R	9046785	2R_9046785_SNP [dm3] 2R_13159280_SNP [dm6]	G	C	2.346e^-4	0.716	UPSTREAM TppII & 1 other INTRON CG34439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15352315	2L_15352315_SNP [dm3] 2L_15352315_SNP [dm6]	G	C	2.355e^-4	0.716	INTERGENIC
X	4107425	X_4107425_DEL [dm3] X_4213392_DEL [dm6]	TCAAT	T	2.359e^-4	0.716	UTR_3_PRIME CG43288	TF binding site BDTNP1_TFBS_gt mE1_TFBS_sens
3L	12477273	3L_12477273_INS [dm3] 3L_12484173_INS [dm6]	T	TG	2.363e^-4	0.716	INTRON CG10663 & 1 other	TF binding site BDTNP1_TFBS_twi
X	20396960	X_20396960_INS [dm3] X_20525933_INS [dm6]	AA	GTTGTT	2.366e^-4	0.716	INTERGENIC	transposable element FlyBase
X	3040704	X_3040704_SNP [dm3] X_3146671_SNP [dm6]	A	C	2.374e^-4	0.716	INTRON N
X	18508389	X_18508389_SNP [dm3] X_18614356_SNP [dm6]	A	C	2.375e^-4	0.716	INTRON CG15040
3L	18949849	3L_18949849_SNP [dm3] 3L_18956749_SNP [dm6]	C	A	2.377e^-4	0.716	INTERGENIC
X	13213550	X_13213550_SNP [dm3] X_13319517_SNP [dm6]	A	C	2.377e^-4	0.716	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	13213902	X_13213902_SNP [dm3] X_13319869_SNP [dm6]	T	A	2.377e^-4	0.716	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	13215016	X_13215016_INS [dm3] X_13320983_INS [dm6]	T	TT	2.377e^-4	0.716	UPSTREAM IP3K2 INTRON IP3K2
X	20368226	X_20368226_SNP [dm3] X_20497199_SNP [dm6]	A	T	2.378e^-4	0.716	INTRON RhoGAP19D
3L	4216273	3L_4216273_SNP [dm3] 3L_4216273_SNP [dm6]	A	G	2.380e^-4	0.716	UTR_3_PRIME Cpr64Ad INTRON CG43367
2R	9030173	2R_9030173_SNP [dm3] 2R_13142668_SNP [dm6]	C	G	2.380e^-4	0.716	UTR_3_PRIME Cap-G DOWNSTREAM Ack-like
3R	18133055	3R_18133055_SNP [dm3] 3R_22307333_SNP [dm6]	C	G	2.390e^-4	0.716	INTERGENIC
3R	16560340	3R_16560340_SNP [dm3] 3R_20734618_SNP [dm6]	C	A	2.392e^-4	0.716	UPSTREAM CR42786 INTERGENIC
2R	9039722	2R_9039722_SNP [dm3] 2R_13152217_SNP [dm6]	G	T	2.395e^-4	0.716	DOWNSTREAM TppII INTRON Ack-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9042572	2R_9042572_SNP [dm3] 2R_13155067_SNP [dm6]	T	C	2.395e^-4	0.716	NON_SYNONYMOUS_CODING TppII
3L	6840227	3L_6840227_SNP [dm3] 3L_6847127_SNP [dm6]	C	A	2.396e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	18670015	3L_18670015_SNP [dm3] 3L_18676915_SNP [dm6]	T	C	2.399e^-4	0.716	SYNONYMOUS_CODING GNBP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9035084	2R_9035084_SNP [dm3] 2R_13147579_SNP [dm6]	G	A	2.400e^-4	0.716	SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5624355	2L_5624355_SNP [dm3] 2L_5624355_SNP [dm6]	T	A	2.409e^-4	0.716	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
X	10041749	X_10041749_SNP [dm3] X_10147716_SNP [dm6]	A	C	2.412e^-4	0.716	INTRON CR44894 & 1 other
X	20356575	X_20356575_SNP [dm3] X_20485548_SNP [dm6]	A	T	2.416e^-4	0.716	UPSTREAM CG15461 INTRON RhoGAP19D
2R	7541496	2R_7541496_SNP [dm3] 2R_11653991_SNP [dm6]	C	A	2.416e^-4	0.716	UPSTREAM CG13198 INTRON Roc2
2R	8951431	2R_8951431_SNP [dm3] 2R_13063926_SNP [dm6]	A	T	2.420e^-4	0.716	INTRON Drl-2
3L	3947735	3L_3947735_SNP [dm3] 3L_3947735_SNP [dm6]	C	T	2.422e^-4	0.716	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
2R	16287095	2R_16287095_SNP [dm3] 2R_20399590_SNP [dm6]	T	C	2.423e^-4	0.716	INTERGENIC
2R	9057138	2R_9057138_SNP [dm3] 2R_13169633_SNP [dm6]	G	A	2.424e^-4	0.716	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	5407620	3L_5407620_DEL [dm3] 3L_5414520_DEL [dm6]	CAA	TT	2.431e^-4	0.716	INTERGENIC
3L	5407624	3L_5407624_SNP [dm3] 3L_5414524_SNP [dm6]	G	C	2.431e^-4	0.716	INTERGENIC
3L	19461448	3L_19461448_SNP [dm3] 3L_19468348_SNP [dm6]	T	C	2.432e^-4	0.716	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	19497514	3L_19497514_SNP [dm3] 3L_19504414_SNP [dm6]	T	A	2.439e^-4	0.716	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3L	18960711	3L_18960711_SNP [dm3] 3L_18967611_SNP [dm6]	T	A	2.441e^-4	0.716	INTERGENIC
3L	15748921	3L_15748921_SNP [dm3] 3L_15755821_SNP [dm6]	G	C	2.443e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21377729	3R_21377729_SNP [dm3] 3R_25552007_SNP [dm6]	A	T	2.451e^-4	0.718	INTRON msi
3L	3724509	3L_3724509_SNP [dm3] 3L_3724509_SNP [dm6]	C	A	2.463e^-4	0.718	INTRON CG32264
3L	5977075	3L_5977075_SNP [dm3] 3L_5983975_SNP [dm6]	G	A	2.467e^-4	0.718	UPSTREAM CR45439 DOWNSTREAM CR45440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	14472670	2R_14472670_SNP [dm3] 2R_18585165_SNP [dm6]	T	A	2.475e^-4	0.718	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2L	9412536	2L_9412536_SNP [dm3] 2L_9412536_SNP [dm6]	G	A	2.477e^-4	0.718	INTRON Shawl
2R	14664159	2R_14664159_SNP [dm3] 2R_18776654_SNP [dm6]	G	A	2.479e^-4	0.718	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16414320	3R_16414320_SNP [dm3] 3R_20588598_SNP [dm6]	A	T	2.488e^-4	0.718	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4426513	3L_4426513_INS [dm3] 3L_4426513_INS [dm6]	A	ATCCGTTGCAA...	2.489e^-4	0.718	UTR_3_PRIME CG15020
2R	17672659	2R_17672659_SNP [dm3] 2R_21785154_SNP [dm6]	C	G	2.497e^-4	0.718	INTERGENIC
2L	795506	2L_795506_SNP [dm3] 2L_795506_SNP [dm6]	G	A	2.498e^-4	0.718	INTERGENIC
X	20778770	X_20778770_SNP [dm3] X_20907743_SNP [dm6]	A	C	2.504e^-4	0.718	INTRON shakB
3L	11382586	3L_11382586_DEL [dm3] 3L_11389486_DEL [dm6]	GAACAG	G	2.505e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18322370	3R_18322370_SNP [dm3] 3R_22496648_SNP [dm6]	A	G	2.514e^-4	0.718	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19171658	3R_19171658_DEL [dm3] 3R_23345936_DEL [dm6]	GT	G	2.517e^-4	0.718	UTR_5_PRIME pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4426515	3L_4426515_SNP [dm3] 3L_4426515_SNP [dm6]	T	G	2.521e^-4	0.718	UTR_3_PRIME CG15020
3R	12109372	3R_12109372_SNP [dm3] 3R_16283650_SNP [dm6]	A	T	2.522e^-4	0.718	INTRON gish
2L	16563025	2L_16563025_SNP [dm3] 2L_16563025_SNP [dm6]	C	A	2.529e^-4	0.718	INTRON CG42389
X	13215069	X_13215069_SNP [dm3] X_13321036_SNP [dm6]	A	C	2.532e^-4	0.718	UPSTREAM IP3K2 INTRON IP3K2
X	13215106	X_13215106_SNP [dm3] X_13321073_SNP [dm6]	C	G	2.532e^-4	0.718	UPSTREAM IP3K2 INTRON IP3K2
3R	17692121	3R_17692121_SNP [dm3] 3R_21866399_SNP [dm6]	T	C	2.533e^-4	0.718	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
3R	15277924	3R_15277924_SNP [dm3] 3R_19452202_SNP [dm6]	G	A	2.536e^-4	0.718	INTRON CG31221	TF binding site mE1_TFBS_Kr
X	13214982	X_13214982_SNP [dm3] X_13320949_SNP [dm6]	G	T	2.541e^-4	0.718	UPSTREAM IP3K2 INTRON IP3K2
3L	10644981	3L_10644981_SNP [dm3] 3L_10651881_SNP [dm6]	A	T	2.542e^-4	0.718	INTRON CG32066
3L	11378299	3L_11378299_SNP [dm3] 3L_11385199_SNP [dm6]	A	C	2.546e^-4	0.718	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18600034	3R_18600034_DEL [dm3] 3R_22774312_DEL [dm6]	TATGT	T	2.547e^-4	0.718	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
2L	3856590	2L_3856590_SNP [dm3] 2L_3856590_SNP [dm6]	C	T	2.547e^-4	0.718	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8602687	X_8602687_SNP [dm3] X_8708654_SNP [dm6]	A	T	2.565e^-4	0.719	UPSTREAM CR44507 & 1 other DOWNSTREAM CR44508 INTERGENIC
3L	3796883	3L_3796883_SNP [dm3] 3L_3796883_SNP [dm6]	A	G	2.574e^-4	0.719	INTRON CG32264
X	12871077	X_12871077_SNP [dm3] X_12977044_SNP [dm6]	A	C	2.581e^-4	0.719	UPSTREAM CG12716 INTERGENIC
3L	1074100	3L_1074100_SNP [dm3] 3L_1074100_SNP [dm6]	T	G	2.582e^-4	0.719	INTRON bab1
3L	10479590	3L_10479590_SNP [dm3] 3L_10486490_SNP [dm6]	G	T	2.591e^-4	0.719	INTRON A2bp1
2R	18028261	2R_18028261_SNP [dm3] 2R_22140756_SNP [dm6]	C	T	2.593e^-4	0.719	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20819596	2L_20819596_SNP [dm3] 2L_20819596_SNP [dm6]	C	A	2.595e^-4	0.719	DOWNSTREAM CheB38c INTERGENIC
2L	2668574	2L_2668574_SNP [dm3] 2L_2668574_SNP [dm6]	T	G	2.597e^-4	0.719	INTERGENIC
3L	21783811	3L_21783811_DEL [dm3] 3L_21790711_DEL [dm6]	ACGAGGATGCAAT...	A	2.602e^-4	0.719	INTERGENIC
3L	21783826	3L_21783826_DEL [dm3] 3L_21790726_DEL [dm6]	CAATT	C	2.602e^-4	0.719	INTERGENIC
3L	16309484	3L_16309484_SNP [dm3] 3L_16316384_SNP [dm6]	A	C	2.607e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20866180	2L_20866180_INS [dm3] 2L_20866180_INS [dm6]	A	AA	2.611e^-4	0.719	INTRON CG9338	TF binding site mE1_TFBS_HSA
X	13349989	X_13349989_SNP [dm3] X_13455956_SNP [dm6]	C	A	2.614e^-4	0.719	DOWNSTREAM CG34324 INTRON Neto
3R	23935647	3R_23935647_SNP [dm3] 3R_28109925_SNP [dm6]	G	A	2.615e^-4	0.719	INTERGENIC
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	2.619e^-4	0.719	INTERGENIC
X	13213877	X_13213877_SNP [dm3] X_13319844_SNP [dm6]	C	A	2.623e^-4	0.719	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17083890	2R_17083890_SNP [dm3] 2R_21196385_SNP [dm6]	G	A	2.633e^-4	0.719	INTRON Lapsyn
3L	9693595	3L_9693595_SNP [dm3] 3L_9700495_SNP [dm6]	G	T	2.634e^-4	0.719	DOWNSTREAM CG6761 & 1 other INTERGENIC
X	13215012	X_13215012_SNP [dm3] X_13320979_SNP [dm6]	A	T	2.635e^-4	0.719	UPSTREAM IP3K2 INTRON IP3K2
X	15414382	X_15414382_SNP [dm3] X_15520349_SNP [dm6]	A	C	2.655e^-4	0.719	INTRON Ac13E
3L	10579113	3L_10579113_SNP [dm3] 3L_10586013_SNP [dm6]	G	A	2.656e^-4	0.719	INTRON A2bp1
3R	21212121	3R_21212121_SNP [dm3] 3R_25386399_SNP [dm6]	C	T	2.659e^-4	0.719	INTRON Fur1
X	21155204	X_21155204_DEL [dm3] X_21284177_DEL [dm6]	GG	G	2.663e^-4	0.719	INTERGENIC
3R	25155824	3R_25155824_SNP [dm3] 3R_29330102_SNP [dm6]	C	T	2.676e^-4	0.719	INTERGENIC
3L	23059699	3L_23059699_SNP [dm3] 3L_23066599_SNP [dm6]	A	G	2.679e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
2R	14663484	2R_14663484_SNP [dm3] 2R_18775979_SNP [dm6]	A	G	2.681e^-4	0.719	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3795078	3L_3795078_SNP [dm3] 3L_3795078_SNP [dm6]	T	G	2.683e^-4	0.719	UPSTREAM CG32264 INTRON CG32264
3L	10479595	3L_10479595_SNP [dm3] 3L_10486495_SNP [dm6]	G	T	2.686e^-4	0.719	INTRON A2bp1
3R	26979231	3R_26979231_SNP [dm3] 3R_31153509_SNP [dm6]	G	A	2.688e^-4	0.719	SYNONYMOUS_CODING Gycbeta100B
3R	11245439	3R_11245439_SNP [dm3] 3R_15419717_SNP [dm6]	T	A	2.691e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19400368	3L_19400368_SNP [dm3] 3L_19407268_SNP [dm6]	C	G	2.694e^-4	0.719	INTRON CG32206
X	13214786	X_13214786_SNP [dm3] X_13320753_SNP [dm6]	T	A	2.698e^-4	0.719	UPSTREAM IP3K2 INTRON IP3K2
3L	18960802	3L_18960802_SNP [dm3] 3L_18967702_SNP [dm6]	C	A	2.698e^-4	0.719	INTERGENIC
3L	5518950	3L_5518950_SNP [dm3] 3L_5525850_SNP [dm6]	G	C	2.703e^-4	0.719	INTRON Lkr
X	21148584	X_21148584_SNP [dm3] X_21277557_SNP [dm6]	A	T	2.711e^-4	0.719	INTRON CG32521
X	4109853	X_4109853_SNP [dm3] X_4215820_SNP [dm6]	G	A	2.712e^-4	0.719	INTERGENIC
2L	4928832	2L_4928832_SNP [dm3] 2L_4928832_SNP [dm6]	C	T	2.716e^-4	0.719	UPSTREAM hoe1 INTRON hoe1
3R	12108704	3R_12108704_SNP [dm3] 3R_16282982_SNP [dm6]	A	C	2.717e^-4	0.719	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
2R	14699343	2R_14699343_SNP [dm3] 2R_18811838_SNP [dm6]	A	G	2.717e^-4	0.719	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3938250	3L_3938250_SNP [dm3] 3L_3938250_SNP [dm6]	A	C	2.721e^-4	0.719	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
X	4112798	X_4112798_SNP [dm3] X_4218765_SNP [dm6]	C	T	2.725e^-4	0.719	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1378471	3L_1378471_SNP [dm3] 3L_1378471_SNP [dm6]	A	C	2.726e^-4	0.719	INTRON Ptp61F & 1 other
2R	9058146	2R_9058146_SNP [dm3] 2R_13170641_SNP [dm6]	T	C	2.732e^-4	0.719	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5377942	3L_5377942_SNP [dm3] 3L_5384842_SNP [dm6]	G	C	2.739e^-4	0.719	INTERGENIC
3R	12108802	3R_12108802_SNP [dm3] 3R_16283080_SNP [dm6]	A	T	2.740e^-4	0.719	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
2L	7309648	2L_7309648_SNP [dm3] 2L_7309648_SNP [dm6]	A	T	2.740e^-4	0.719	INTRON wg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13987792	3L_13987792_SNP [dm3] 3L_13994692_SNP [dm6]	T	C	2.741e^-4	0.719	INTRON 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	18483324	X_18483324_SNP [dm3] X_18589291_SNP [dm6]	C	G	2.745e^-4	0.719	INTERGENIC
X	20158892	X_20158892_SNP [dm3] X_20287865_SNP [dm6]	A	G	2.749e^-4	0.719	INTERGENIC
2L	9412537	2L_9412537_SNP [dm3] 2L_9412537_SNP [dm6]	A	G	2.750e^-4	0.719	INTRON Shawl
3L	2673337	3L_2673337_SNP [dm3] 3L_2673337_SNP [dm6]	T	C	2.752e^-4	0.719	INTRON Fife
3R	26219907	3R_26219907_SNP [dm3] 3R_30394185_SNP [dm6]	C	T	2.754e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23145485	3R_23145485_SNP [dm3] 3R_27319763_SNP [dm6]	T	A	2.767e^-4	0.719	SYNONYMOUS_CODING CG3339 DOWNSTREAM CR44287	TF binding site mE1_TFBS_chinmo
3R	15341678	3R_15341678_SNP [dm3] 3R_19515956_SNP [dm6]	G	A	2.776e^-4	0.719	INTRON Dys
3R	13058533	3R_13058533_SNP [dm3] 3R_17232811_SNP [dm6]	G	A	2.777e^-4	0.719	SYNONYMOUS_CODING beat-IIb
3L	1685374	3L_1685374_SNP [dm3] 3L_1685374_SNP [dm6]	T	G	2.786e^-4	0.719	INTRON CG7991
3L	11367920	3L_11367920_SNP [dm3] 3L_11374820_SNP [dm6]	G	A	2.787e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	9853840	2R_9853840_SNP [dm3] 2R_13966335_SNP [dm6]	C	T	2.800e^-4	0.719	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16414325	3R_16414325_SNP [dm3] 3R_20588603_SNP [dm6]	T	A	2.801e^-4	0.719	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12829944	2L_12829944_SNP [dm3] 2L_12829944_SNP [dm6]	A	G	2.804e^-4	0.719	INTERGENIC
2L	6459101	2L_6459101_SNP [dm3] 2L_6459101_SNP [dm6]	T	A	2.808e^-4	0.719	UTR_3_PRIME CG16947 DOWNSTREAM CG16947 & 1 other
3L	6364671	3L_6364671_SNP [dm3] 3L_6371571_SNP [dm6]	A	T	2.810e^-4	0.719	UPSTREAM CR45419 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8104256	X_8104256_SNP [dm3] X_8210223_SNP [dm6]	C	G	2.812e^-4	0.719	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8104275	X_8104275_SNP [dm3] X_8210242_SNP [dm6]	G	A	2.812e^-4	0.719	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	21035423	2L_21035423_SNP [dm3] 2L_21035423_SNP [dm6]	T	C	2.814e^-4	0.719	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10479348	3L_10479348_SNP [dm3] 3L_10486248_SNP [dm6]	T	C	2.820e^-4	0.719	INTRON A2bp1
3L	6568896	3L_6568896_SNP [dm3] 3L_6575796_SNP [dm6]	G	T	2.827e^-4	0.719	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
3L	19422047	3L_19422047_SNP [dm3] 3L_19428947_SNP [dm6]	G	A	2.829e^-4	0.719	INTERGENIC
2R	20180700	2R_20180700_SNP [dm3] 2R_24293177_SNP [dm6]	G	A	2.833e^-4	0.719	UPSTREAM CG3394 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9044922	2R_9044922_SNP [dm3] 2R_13157417_SNP [dm6]	G	C	2.843e^-4	0.719	SYNONYMOUS_CODING TppII	TF binding site mE1_TFBS_sens
3L	5669327	3L_5669327_SNP [dm3] 3L_5676227_SNP [dm6]	A	G	2.843e^-4	0.719	INTRON sif
3L	5987648	3L_5987648_SNP [dm3] 3L_5994548_SNP [dm6]	C	T	2.847e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1028953	3L_1028953_SNP [dm3] 3L_1028953_SNP [dm6]	A	C	2.849e^-4	0.719	INTRON trio
X	13214788	X_13214788_SNP [dm3] X_13320755_SNP [dm6]	C	T	2.854e^-4	0.719	UPSTREAM IP3K2 INTRON IP3K2
2L	4156166	2L_4156166_DEL [dm3] 2L_4156166_DEL [dm6]	AA	A	2.861e^-4	0.719	INTERGENIC
3L	17795456	3L_17795456_SNP [dm3] 3L_17802356_SNP [dm6]	A	C	2.864e^-4	0.719	UPSTREAM NUCB1 DOWNSTREAM CG5589 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5229784	3L_5229784_SNP [dm3] 3L_5236684_SNP [dm6]	A	T	2.869e^-4	0.719	DOWNSTREAM CG4669 INTRON shep
2R	18955918	2R_18955918_SNP [dm3] 2R_23068395_SNP [dm6]	A	C	2.871e^-4	0.719	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
3R	21211678	3R_21211678_SNP [dm3] 3R_25385956_SNP [dm6]	T	C	2.871e^-4	0.719	INTRON Fur1
2L	9519108	2L_9519108_SNP [dm3] 2L_9519108_SNP [dm6]	C	A	2.872e^-4	0.719	INTRON CG33298
2L	504142	2L_504142_SNP [dm3] 2L_504142_SNP [dm6]	A	C	2.873e^-4	0.719	INTRON ush
X	13214989	X_13214989_SNP [dm3] X_13320956_SNP [dm6]	G	A	2.876e^-4	0.719	UPSTREAM IP3K2 INTRON IP3K2
X	13214991	X_13214991_SNP [dm3] X_13320958_SNP [dm6]	T	A	2.876e^-4	0.719	UPSTREAM IP3K2 INTRON IP3K2
2R	3947267	2R_3947267_SNP [dm3] 2R_8059762_SNP [dm6]	A	C	2.885e^-4	0.719	INTRON CG12769	TF binding site BDTNP1_TFBS_dl
3L	3341499	3L_3341499_SNP [dm3] 3L_3341499_SNP [dm6]	G	T	2.887e^-4	0.719	INTRON kst
3L	16420906	3L_16420906_SNP [dm3] 3L_16427806_SNP [dm6]	T	G	2.888e^-4	0.719	INTRON CG33158 & 1 other
2L	4347759	2L_4347759_SNP [dm3] 2L_4347759_SNP [dm6]	G	T	2.889e^-4	0.719	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8013854	2R_8013854_SNP [dm3] 2R_12126349_SNP [dm6]	G	A	2.892e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10930380	3L_10930380_SNP [dm3] 3L_10937280_SNP [dm6]	T	G	2.893e^-4	0.719	INTERGENIC
3L	17772677	3L_17772677_SNP [dm3] 3L_17779577_SNP [dm6]	C	T	2.900e^-4	0.72	INTERGENIC
3R	9951381	3R_9951381_SNP [dm3] 3R_14125659_SNP [dm6]	C	T	2.902e^-4	0.72	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4395459	3R_4395459_SNP [dm3] 3R_8569737_SNP [dm6]	C	T	2.910e^-4	0.72	DOWNSTREAM Cenp-C INTERGENIC
2L	11900369	2L_11900369_SNP [dm3] 2L_11900369_SNP [dm6]	T	C	2.923e^-4	0.721	INTRON Pde1c
3R	27071671	3R_27071671_SNP [dm3] 3R_31245949_SNP [dm6]	G	A	2.926e^-4	0.721	INTRON qless
3L	18946106	3L_18946106_SNP [dm3] 3L_18953006_SNP [dm6]	T	C	2.934e^-4	0.721	INTRON CG6836
3L	5075745	3L_5075745_SNP [dm3] 3L_5075745_SNP [dm6]	C	G	2.940e^-4	0.721	INTRON Con
3L	11585035	3L_11585035_SNP [dm3] 3L_11591935_SNP [dm6]	A	G	2.941e^-4	0.721	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12108748	3R_12108748_SNP [dm3] 3R_16283026_SNP [dm6]	C	T	2.946e^-4	0.721	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
3L	2153199	3L_2153199_SNP [dm3] 3L_2153199_SNP [dm6]	A	G	2.947e^-4	0.721	DOWNSTREAM CG15822 INTERGENIC
3R	9012451	3R_9012451_SNP [dm3] 3R_13186729_SNP [dm6]	C	T	2.947e^-4	0.721	UPSTREAM CG8508 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9034897	2R_9034897_SNP [dm3] 2R_13147392_SNP [dm6]	C	A	2.952e^-4	0.721	NON_SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17775800	3L_17775800_SNP [dm3] 3L_17782700_SNP [dm6]	C	T	2.952e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	7318986	2L_7318986_SNP [dm3] 2L_7318986_SNP [dm6]	C	G	2.965e^-4	0.722	INTERGENIC
3L	9693586	3L_9693586_DEL [dm3] 3L_9700486_DEL [dm6]	AACGTGA	A	2.969e^-4	0.722	DOWNSTREAM CG6761 & 1 other INTERGENIC
3R	4020647	3R_4020647_SNP [dm3] 3R_8194925_SNP [dm6]	A	G	2.970e^-4	0.722	INTERGENIC
X	16416571	X_16416571_SNP [dm3] X_16522538_SNP [dm6]	C	A	2.984e^-4	0.722	DOWNSTREAM Cnx14D INTRON para
3L	1254360	3L_1254360_SNP [dm3] 3L_1254360_SNP [dm6]	C	T	2.993e^-4	0.722	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2L	9413558	2L_9413558_SNP [dm3] 2L_9413558_SNP [dm6]	G	C	2.999e^-4	0.722	INTRON Shawl
3R	16414358	3R_16414358_SNP [dm3] 3R_20588636_SNP [dm6]	T	A	3.002e^-4	0.722	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25465378	3R_25465378_SNP [dm3] 3R_29639656_SNP [dm6]	C	T	3.012e^-4	0.722	INTRON Dop1R2
3R	15277898	3R_15277898_SNP [dm3] 3R_19452176_SNP [dm6]	A	G	3.015e^-4	0.722	INTRON CG31221
3L	2002343	3L_2002343_SNP [dm3] 3L_2002343_SNP [dm6]	G	C	3.018e^-4	0.722	DOWNSTREAM CG42841 INTERGENIC
3R	15278153	3R_15278153_SNP [dm3] 3R_19452431_SNP [dm6]	G	A	3.018e^-4	0.722	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	16287052	2R_16287052_SNP [dm3] 2R_20399547_SNP [dm6]	A	G	3.022e^-4	0.722	INTERGENIC
3L	4942976	3L_4942976_SNP [dm3] 3L_4942976_SNP [dm6]	A	T	3.031e^-4	0.722	INTRON Con
2L	9413695	2L_9413695_SNP [dm3] 2L_9413695_SNP [dm6]	T	A	3.032e^-4	0.722	INTRON Shawl
2L	7418667	2L_7418667_SNP [dm3] 2L_7418667_SNP [dm6]	A	C	3.041e^-4	0.722	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18000128	2R_18000128_SNP [dm3] 2R_22112623_SNP [dm6]	G	A	3.051e^-4	0.722	UPSTREAM CG30280 INTRON Vrp1
3R	21205579	3R_21205579_SNP [dm3] 3R_25379857_SNP [dm6]	G	A	3.056e^-4	0.722	INTRON Fur1
X	9083985	X_9083985_SNP [dm3] X_9189952_SNP [dm6]	A	G	3.069e^-4	0.722	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2R	11800814	2R_11800814_INS [dm3] 2R_15913309_INS [dm6]	A	AA	3.070e^-4	0.722	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	18600029	3R_18600029_SNP [dm3] 3R_22774307_SNP [dm6]	T	G	3.071e^-4	0.722	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
X	4572652	X_4572652_SNP [dm3] X_4678619_SNP [dm6]	C	A	3.072e^-4	0.722	INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3093573	2L_3093573_SNP [dm3] 2L_3093573_SNP [dm6]	T	C	3.076e^-4	0.722	INTRON toc
3R	5648003	3R_5648003_SNP [dm3] 3R_9822281_SNP [dm6]	A	G	3.080e^-4	0.722	DOWNSTREAM CG34302 INTERGENIC
3R	16413826	3R_16413826_SNP [dm3] 3R_20588104_SNP [dm6]	G	T	3.080e^-4	0.722	UPSTREAM Srp72 INTRON Sep2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4216297	3L_4216297_SNP [dm3] 3L_4216297_SNP [dm6]	A	T	3.084e^-4	0.722	UTR_3_PRIME Cpr64Ad INTRON CG43367
X	13214789	X_13214789_SNP [dm3] X_13320756_SNP [dm6]	G	A	3.084e^-4	0.722	UPSTREAM IP3K2 INTRON IP3K2
2L	3445638	2L_3445638_SNP [dm3] 2L_3445638_SNP [dm6]	T	C	3.085e^-4	0.722	UPSTREAM CG2772 INTERGENIC
2R	11842427	2R_11842427_SNP [dm3] 2R_15954922_SNP [dm6]	A	T	3.087e^-4	0.722	UPSTREAM CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk
2L	1050192	2L_1050192_SNP [dm3] 2L_1050192_SNP [dm6]	G	A	3.095e^-4	0.722	UTR_3_PRIME S
3R	12948613	3R_12948613_SNP [dm3] 3R_17122891_SNP [dm6]	T	C	3.098e^-4	0.722	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3L	3796253	3L_3796253_SNP [dm3] 3L_3796253_SNP [dm6]	A	G	3.109e^-4	0.722	INTRON CG32264
3L	5721657	3L_5721657_SNP [dm3] 3L_5728557_SNP [dm6]	G	C	3.110e^-4	0.722	SYNONYMOUS_CODING sif
2R	17083450	2R_17083450_SNP [dm3] 2R_21195945_SNP [dm6]	C	T	3.114e^-4	0.722	INTRON Lapsyn
3L	12558101	3L_12558101_SNP [dm3] 3L_12565001_SNP [dm6]	C	T	3.114e^-4	0.722	SYNONYMOUS_CODING sowah
3R	15277887	3R_15277887_SNP [dm3] 3R_19452165_SNP [dm6]	A	G	3.115e^-4	0.722	INTRON CG31221
3L	10479559	3L_10479559_SNP [dm3] 3L_10486459_SNP [dm6]	A	T	3.116e^-4	0.722	INTRON A2bp1
X	8104394	X_8104394_SNP [dm3] X_8210361_SNP [dm6]	T	A	3.120e^-4	0.722	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12420240	2R_12420240_SNP [dm3] 2R_16532735_SNP [dm6]	C	G	3.129e^-4	0.722	UTR_3_PRIME Sema-2a
3L	2004298	3L_2004298_SNP [dm3] 3L_2004298_SNP [dm6]	T	A	3.129e^-4	0.722	DOWNSTREAM CG42841 INTRON CG42841
3L	6018392	3L_6018392_SNP [dm3] 3L_6025292_SNP [dm6]	A	T	3.149e^-4	0.722	SYNONYMOUS_CODING PVRAP
3L	12826447	3L_12826447_SNP [dm3] 3L_12833347_SNP [dm6]	A	C	3.149e^-4	0.722	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl
3L	5383481	3L_5383481_SNP [dm3] 3L_5390381_SNP [dm6]	A	G	3.151e^-4	0.722	INTERGENIC
3L	3796240	3L_3796240_SNP [dm3] 3L_3796240_SNP [dm6]	T	G	3.152e^-4	0.722	INTRON CG32264
3L	16423108	3L_16423108_SNP [dm3] 3L_16430008_SNP [dm6]	C	T	3.152e^-4	0.722	INTRON CG33158 & 1 other
X	14846272	X_14846272_DEL [dm3] X_14952239_DEL [dm6]	TT	T	3.156e^-4	0.722	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1252133	3L_1252133_SNP [dm3] 3L_1252133_SNP [dm6]	A	C	3.161e^-4	0.722	UTR_5_PRIME CG9130 & 1 other DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2R	19040725	2R_19040725_SNP [dm3] 2R_23153202_SNP [dm6]	A	G	3.161e^-4	0.722	UTR_3_PRIME CG43207 UPSTREAM CG9899
3R	12108768	3R_12108768_DEL [dm3] 3R_16283046_DEL [dm6]	AA	A	3.161e^-4	0.722	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
X	4578418	X_4578418_SNP [dm3] X_4684385_SNP [dm6]	C	G	3.161e^-4	0.722	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2042399	2L_2042399_SNP [dm3] 2L_2042399_SNP [dm6]	A	G	3.162e^-4	0.722	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4311372	2R_4311372_SNP [dm3] 2R_8423867_SNP [dm6]	A	C	3.173e^-4	0.722	INTRON CSN7
2R	9057132	2R_9057132_SNP [dm3] 2R_13169627_SNP [dm6]	A	T	3.173e^-4	0.722	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9057147	2R_9057147_SNP [dm3] 2R_13169642_SNP [dm6]	G	T	3.173e^-4	0.722	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	18959096	3L_18959096_SNP [dm3] 3L_18965996_SNP [dm6]	G	A	3.176e^-4	0.722	INTERGENIC
3L	10479345	3L_10479345_SNP [dm3] 3L_10486245_SNP [dm6]	G	T	3.177e^-4	0.722	INTRON A2bp1
3L	7411004	3L_7411004_SNP [dm3] 3L_7417904_SNP [dm6]	C	T	3.180e^-4	0.722	INTERGENIC
3L	4368193	3L_4368193_SNP [dm3] 3L_4368193_SNP [dm6]	T	C	3.188e^-4	0.722	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
3L	4268791	3L_4268791_SNP [dm3] 3L_4268791_SNP [dm6]	A	G	3.191e^-4	0.722	INTRON CG1273	TF binding site BDTNP1_TFBS_dl
3R	18600114	3R_18600114_SNP [dm3] 3R_22774392_SNP [dm6]	A	C	3.192e^-4	0.722	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3L	18961574	3L_18961574_SNP [dm3] 3L_18968474_SNP [dm6]	C	T	3.206e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18953121	3L_18953121_SNP [dm3] 3L_18960021_SNP [dm6]	G	C	3.210e^-4	0.722	INTERGENIC
2R	9031876	2R_9031876_SNP [dm3] 2R_13144371_SNP [dm6]	T	C	3.211e^-4	0.722	SYNONYMOUS_CODING Ack-like DOWNSTREAM Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9815480	3R_9815480_SNP [dm3] 3R_13989758_SNP [dm6]	T	C	3.213e^-4	0.722	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13213432	X_13213432_SNP [dm3] X_13319399_SNP [dm6]	C	A	3.220e^-4	0.722	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl
3R	6818218	3R_6818218_SNP [dm3] 3R_10992496_SNP [dm6]	G	A	3.221e^-4	0.722	INTRON CG34114
3L	3794038	3L_3794038_SNP [dm3] 3L_3794038_SNP [dm6]	T	A	3.223e^-4	0.722	INTRON CG32264
3L	1946257	3L_1946257_SNP [dm3] 3L_1946257_SNP [dm6]	C	T	3.235e^-4	0.722	NON_SYNONYMOUS_CODING mu2
2L	7586772	2L_7586772_SNP [dm3] 2L_7586772_SNP [dm6]	G	A	3.237e^-4	0.722	INTERGENIC
3R	25262009	3R_25262009_SNP [dm3] 3R_29436287_SNP [dm6]	T	C	3.238e^-4	0.722	INTRON Ptp99A
X	13575010	X_13575010_SNP [dm3] X_13680977_SNP [dm6]	A	T	3.239e^-4	0.722	UPSTREAM CG12177 INTERGENIC
3L	1278167	3L_1278167_SNP [dm3] 3L_1278167_SNP [dm6]	A	C	3.240e^-4	0.722	INTRON CG32333
3L	13895649	3L_13895649_SNP [dm3] 3L_13902549_SNP [dm6]	A	T	3.241e^-4	0.722	UTR_5_PRIME dysc
2L	7056012	2L_7056012_SNP [dm3] 2L_7056012_SNP [dm6]	A	T	3.246e^-4	0.722	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3122191	2L_3122191_SNP [dm3] 2L_3122191_SNP [dm6]	A	T	3.247e^-4	0.722	INTRON toc
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	3.248e^-4	0.722	INTERGENIC
3L	11378286	3L_11378286_SNP [dm3] 3L_11385186_SNP [dm6]	C	T	3.253e^-4	0.722	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	8982510	3R_8982510_SNP [dm3] 3R_13156788_SNP [dm6]	C	G	3.253e^-4	0.722	INTRON timeout	TF binding site BDTNP1_TFBS_twi
2L	5263290	2L_5263290_SNP [dm3] 2L_5263290_SNP [dm6]	G	T	3.256e^-4	0.722	UPSTREAM Cyp4ac1 INTRON tkv
3L	13962392	3L_13962392_SNP [dm3] 3L_13969292_SNP [dm6]	G	A	3.264e^-4	0.722	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
X	7777560	X_7777560_SNP [dm3] X_7883527_SNP [dm6]	G	A	3.277e^-4	0.722	SYNONYMOUS_CODING Ir7f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14303700	3R_14303700_SNP [dm3] 3R_18477978_SNP [dm6]	A	G	3.278e^-4	0.722	INTRON fru
2R	15975880	2R_15975880_SNP [dm3] 2R_20088375_SNP [dm6]	A	G	3.280e^-4	0.722	INTERGENIC
X	13213251	X_13213251_SNP [dm3] X_13319218_SNP [dm6]	C	G	3.284e^-4	0.722	INTRON IP3K2
3R	23950237	3R_23950237_SNP [dm3] 3R_28124515_SNP [dm6]	C	G	3.287e^-4	0.722	INTERGENIC
2R	14663243	2R_14663243_SNP [dm3] 2R_18775738_SNP [dm6]	T	G	3.288e^-4	0.722	UTR_3_PRIME CG15093 DOWNSTREAM Mctp INTRON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2895504	2L_2895504_DEL [dm3] 2L_2895504_DEL [dm6]	AA	A	3.291e^-4	0.722	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20555319	X_20555319_SNP [dm3] X_20684292_SNP [dm6]	T	C	3.292e^-4	0.722	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	7318897	2L_7318897_SNP [dm3] 2L_7318897_SNP [dm6]	G	T	3.296e^-4	0.722	INTERGENIC
3R	13926036	3R_13926036_SNP [dm3] 3R_18100314_SNP [dm6]	C	T	3.330e^-4	0.725	INTRON sr
3L	3795943	3L_3795943_SNP [dm3] 3L_3795943_SNP [dm6]	G	T	3.335e^-4	0.725	UPSTREAM CG32264 INTRON CG32264
3L	18960792	3L_18960792_SNP [dm3] 3L_18967692_SNP [dm6]	C	T	3.337e^-4	0.725	INTERGENIC
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	3.338e^-4	0.725	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18023407	2R_18023407_SNP [dm3] 2R_22135902_SNP [dm6]	C	A	3.343e^-4	0.725	INTERGENIC
3L	5669740	3L_5669740_SNP [dm3] 3L_5676640_SNP [dm6]	G	A	3.344e^-4	0.725	SYNONYMOUS_CODING sif
2L	3093626	2L_3093626_SNP [dm3] 2L_3093626_SNP [dm6]	G	T	3.346e^-4	0.725	INTRON toc
X	12403464	X_12403464_SNP [dm3] X_12509431_SNP [dm6]	A	G	3.353e^-4	0.725	INTRON CG2556
3L	2383086	3L_2383086_SNP [dm3] 3L_2383086_SNP [dm6]	T	A	3.355e^-4	0.725	INTRON CG45186
3L	3116572	3L_3116572_SNP [dm3] 3L_3116572_SNP [dm6]	G	T	3.357e^-4	0.725	DOWNSTREAM prominin-like INTRON prominin-like
3R	15055982	3R_15055982_SNP [dm3] 3R_19230260_SNP [dm6]	A	C	3.358e^-4	0.725	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15055988	3R_15055988_SNP [dm3] 3R_19230266_SNP [dm6]	C	G	3.358e^-4	0.725	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5382546	3L_5382546_SNP [dm3] 3L_5389446_SNP [dm6]	G	A	3.366e^-4	0.725	INTERGENIC
2R	10381525	2R_10381525_SNP [dm3] 2R_14494020_SNP [dm6]	A	T	3.368e^-4	0.725	INTRON L	TF binding site mE1_TFBS_cad
3L	3720037	3L_3720037_SNP [dm3] 3L_3720037_SNP [dm6]	T	C	3.373e^-4	0.725	INTRON CG32264
3L	10479556	3L_10479556_SNP [dm3] 3L_10486456_SNP [dm6]	A	G	3.376e^-4	0.725	INTRON A2bp1
X	16887060	X_16887060_SNP [dm3] X_16993027_SNP [dm6]	C	T	3.380e^-4	0.725	INTRON CG45002
X	13213304	X_13213304_DEL [dm3] X_13319271_DEL [dm6]	TA	G	3.385e^-4	0.725	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl
3R	15589648	3R_15589648_SNP [dm3] 3R_19763926_SNP [dm6]	A	T	3.386e^-4	0.725	INTRON GluClalpha
2L	20862955	2L_20862955_SNP [dm3] 2L_20862955_SNP [dm6]	C	T	3.389e^-4	0.725	INTRON CR9337
3L	14470595	3L_14470595_DEL [dm3] 3L_14477495_DEL [dm6]	TCAT	T	3.391e^-4	0.725	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2R	14664093	2R_14664093_SNP [dm3] 2R_18776588_SNP [dm6]	C	T	3.395e^-4	0.725	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12404466	X_12404466_SNP [dm3] X_12510433_SNP [dm6]	C	G	3.396e^-4	0.725	INTRON CG2556
X	3352715	X_3352715_SNP [dm3] X_3458682_SNP [dm6]	T	G	3.407e^-4	0.725	DOWNSTREAM CG16782 INTRON CR44999
3R	25289127	3R_25289127_SNP [dm3] 3R_29463405_SNP [dm6]	T	A	3.409e^-4	0.725	INTRON Ptp99A	TF binding site mE1_TFBS_cad
X	2603479	X_2603479_SNP [dm3] X_2709446_SNP [dm6]	C	T	3.411e^-4	0.725	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
X	3040710	X_3040710_INS [dm3] X_3146677_INS [dm6]	A	ATTGTA	3.421e^-4	0.725	INTRON N
2R	13861209	2R_13861209_SNP [dm3] 2R_17973704_SNP [dm6]	C	T	3.428e^-4	0.725	INTERGENIC
3R	15055847	3R_15055847_SNP [dm3] 3R_19230125_SNP [dm6]	G	A	3.429e^-4	0.725	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14466435	X_14466435_SNP [dm3] X_14572402_SNP [dm6]	C	A	3.429e^-4	0.725	INTERGENIC
X	14845945	X_14845945_SNP [dm3] X_14951912_SNP [dm6]	A	C	3.429e^-4	0.725	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13199874	3R_13199874_SNP [dm3] 3R_17374152_SNP [dm6]	G	A	3.431e^-4	0.725	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7587130	2R_7587130_SNP [dm3] 2R_11699625_SNP [dm6]	C	A	3.433e^-4	0.725	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23906634	3R_23906634_SNP [dm3] 3R_28080912_SNP [dm6]	A	C	3.458e^-4	0.728	INTRON CG34362
3L	4426523	3L_4426523_SNP [dm3] 3L_4426523_SNP [dm6]	G	A	3.465e^-4	0.728	UTR_3_PRIME CG15020
X	20452179	X_20452179_DEL [dm3] X_20581152_DEL [dm6]	TTTCGGC	T	3.478e^-4	0.728	INTERGENIC
2L	7014069	2L_7014069_SNP [dm3] 2L_7014069_SNP [dm6]	G	C	3.480e^-4	0.728	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3R	12108799	3R_12108799_SNP [dm3] 3R_16283077_SNP [dm6]	A	T	3.481e^-4	0.728	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Kr
3L	838324	3L_838324_SNP [dm3] 3L_838324_SNP [dm6]	C	T	3.491e^-4	0.728	SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25445395	3R_25445395_SNP [dm3] 3R_29619673_SNP [dm6]	C	T	3.494e^-4	0.728	INTRON CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19754473	X_19754473_SNP [dm3] X_19860440_SNP [dm6]	T	A	3.496e^-4	0.728	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15278032	3R_15278032_SNP [dm3] 3R_19452310_SNP [dm6]	T	A	3.498e^-4	0.728	INTRON CG31221	TF binding site mE1_TFBS_Kr
2R	11800817	2R_11800817_SNP [dm3] 2R_15913312_SNP [dm6]	G	A	3.498e^-4	0.728	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15055757	3R_15055757_SNP [dm3] 3R_19230035_SNP [dm6]	T	C	3.503e^-4	0.728	SYNONYMOUS_CODING CG3773 UPSTREAM CG5250 DOWNSTREAM unc79	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	23139288	3L_23139288_SNP [dm3] 3L_23146188_SNP [dm6]	C	A	3.504e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2478088	3L_2478088_SNP [dm3] 3L_2478088_SNP [dm6]	G	T	3.505e^-4	0.728	INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5228311	3L_5228311_SNP [dm3] 3L_5235211_SNP [dm6]	C	T	3.505e^-4	0.728	SYNONYMOUS_CODING CG4669 INTRON shep	TF binding site mE1_TFBS_sens
3R	13810949	3R_13810949_SNP [dm3] 3R_17985227_SNP [dm6]	A	T	3.511e^-4	0.728	INTRON cpo
3R	16414349	3R_16414349_SNP [dm3] 3R_20588627_SNP [dm6]	T	A	3.515e^-4	0.728	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8013861	2R_8013861_SNP [dm3] 2R_12126356_SNP [dm6]	T	C	3.518e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9413563	2L_9413563_SNP [dm3] 2L_9413563_SNP [dm6]	C	T	3.520e^-4	0.728	INTRON Shawl
3L	15336088	3L_15336088_SNP [dm3] 3L_15342988_SNP [dm6]	A	G	3.526e^-4	0.728	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
3L	15625242	3L_15625242_SNP [dm3] 3L_15632142_SNP [dm6]	T	C	3.527e^-4	0.728	SYNONYMOUS_CODING comm3 INTRON comm3
2L	10801416	2L_10801416_SNP [dm3] 2L_10801416_SNP [dm6]	C	A	3.535e^-4	0.728	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	3300470	2L_3300470_DEL [dm3] 2L_3300470_DEL [dm6]	GT	G	3.535e^-4	0.728	INTRON CG9663	TF binding site mE1_TFBS_HSA
X	21074462	X_21074462_SNP [dm3] X_21203435_SNP [dm6]	A	G	3.560e^-4	0.732	UPSTREAM CG1724 INTERGENIC
3L	20168918	3L_20168918_SNP [dm3] 3L_20175818_SNP [dm6]	T	C	3.566e^-4	0.732	INTRON CG42674
2L	1052561	2L_1052561_SNP [dm3] 2L_1052561_SNP [dm6]	C	G	3.574e^-4	0.732	SPLICE_SITE_REGION S INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20034574	2R_20034574_SNP [dm3] 2R_24147051_SNP [dm6]	C	T	3.577e^-4	0.732	UTR_5_PRIME Dat INTRON Dat
3L	10479589	3L_10479589_SNP [dm3] 3L_10486489_SNP [dm6]	A	T	3.583e^-4	0.732	INTRON A2bp1
3R	13918385	3R_13918385_DEL [dm3] 3R_18092663_DEL [dm6]	AATCCAGCCA	A	3.583e^-4	0.732	INTRON sr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4348704	2L_4348704_SNP [dm3] 2L_4348704_SNP [dm6]	G	T	3.586e^-4	0.732	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4371567	2L_4371567_SNP [dm3] 2L_4371567_SNP [dm6]	T	A	3.586e^-4	0.732	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	9815478	3R_9815478_SNP [dm3] 3R_13989756_SNP [dm6]	A	G	3.602e^-4	0.732	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6743126	2L_6743126_SNP [dm3] 2L_6743126_SNP [dm6]	G	C	3.604e^-4	0.732	INTRON CG11221
3R	9951541	3R_9951541_SNP [dm3] 3R_14125819_SNP [dm6]	A	T	3.608e^-4	0.732	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24800341	3R_24800341_SNP [dm3] 3R_28974619_SNP [dm6]	G	A	3.613e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3794060	3L_3794060_SNP [dm3] 3L_3794060_SNP [dm6]	A	C	3.614e^-4	0.732	INTRON CG32264
X	8644344	X_8644344_DEL [dm3] X_8750311_DEL [dm6]	ATT	A	3.618e^-4	0.732	INTERGENIC
X	8644350	X_8644350_SNP [dm3] X_8750317_SNP [dm6]	T	C	3.618e^-4	0.732	INTERGENIC
3L	5910514	3L_5910514_SNP [dm3] 3L_5917414_SNP [dm6]	A	C	3.619e^-4	0.732	UTR_3_PRIME CG13288 UPSTREAM CR45167 DOWNSTREAM CG10483
X	8644454	X_8644454_SNP [dm3] X_8750421_SNP [dm6]	A	C	3.623e^-4	0.732	INTERGENIC
3L	762001	3L_762001_SNP [dm3] 3L_762001_SNP [dm6]	G	C	3.624e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
X	4578145	X_4578145_INS [dm3] X_4684112_INS [dm6]	A	AA	3.628e^-4	0.732	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16409647	3L_16409647_SNP [dm3] 3L_16416547_SNP [dm6]	A	G	3.638e^-4	0.733	NON_SYNONYMOUS_CODING CG4573 DOWNSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6451792	3R_6451792_SNP [dm3] 3R_10626070_SNP [dm6]	G	T	3.655e^-4	0.733	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15278284	3R_15278284_SNP [dm3] 3R_19452562_SNP [dm6]	T	G	3.659e^-4	0.733	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	14721597	X_14721597_SNP [dm3] X_14827564_SNP [dm6]	C	T	3.660e^-4	0.733	UTR_3_PRIME CG14408 DOWNSTREAM CG14408	TF binding site BDTNP1_TFBS_dl
2R	8929291	2R_8929291_SNP [dm3] 2R_13041786_SNP [dm6]	T	A	3.681e^-4	0.733	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	11600598	3R_11600598_SNP [dm3] 3R_15774876_SNP [dm6]	A	T	3.690e^-4	0.733	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207
3R	11601376	3R_11601376_SNP [dm3] 3R_15775654_SNP [dm6]	C	T	3.690e^-4	0.733	UPSTREAM CR45206 & 1 other INTRON CG4525
3L	5569025	3L_5569025_SNP [dm3] 3L_5575925_SNP [dm6]	T	C	3.691e^-4	0.733	UPSTREAM Msr-110 INTRON Msr-110
2L	7587031	2L_7587031_DEL [dm3] 2L_7587031_DEL [dm6]	AT	A	3.693e^-4	0.733	INTERGENIC
2L	2042423	2L_2042423_SNP [dm3] 2L_2042423_SNP [dm6]	T	C	3.696e^-4	0.733	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14773510	3R_14773510_SNP [dm3] 3R_18947788_SNP [dm6]	C	T	3.705e^-4	0.733	NON_SYNONYMOUS_CODING CG42613
X	21148878	X_21148878_SNP [dm3] X_21277851_SNP [dm6]	T	A	3.710e^-4	0.733	INTRON CG32521
3L	2983346	3L_2983346_DEL [dm3] 3L_2983346_DEL [dm6]	GGCTTTAACGTAACAGGGAG...	G	3.711e^-4	0.733	UTR_3_PRIME CG2107
3R	12810251	3R_12810251_SNP [dm3] 3R_16984529_SNP [dm6]	C	G	3.716e^-4	0.733	INTRON CG18622
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	3.720e^-4	0.733	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3559251	2R_3559251_SNP [dm3] 2R_7671746_SNP [dm6]	G	C	3.724e^-4	0.733	UPSTREAM CG12826 INTERGENIC
3R	13918362	3R_13918362_SNP [dm3] 3R_18092640_SNP [dm6]	T	C	3.724e^-4	0.733	INTRON sr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14621501	3R_14621501_SNP [dm3] 3R_18795779_SNP [dm6]	A	T	3.725e^-4	0.733	UPSTREAM CG7720 INTERGENIC
2R	14664003	2R_14664003_SNP [dm3] 2R_18776498_SNP [dm6]	G	T	3.725e^-4	0.733	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5977123	3L_5977123_SNP [dm3] 3L_5984023_SNP [dm6]	T	A	3.727e^-4	0.733	UPSTREAM CR45439 DOWNSTREAM CR45440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	11122252	3L_11122252_SNP [dm3] 3L_11129152_SNP [dm6]	T	A	3.728e^-4	0.733	UTR_5_PRIME CG42575 UPSTREAM CG42575
3L	5284039	3L_5284039_INS [dm3] 3L_5290939_INS [dm6]	A	GCCAGAAAAGAAGATTTTCG...	3.742e^-4	0.733	INTERGENIC
2R	7541491	2R_7541491_SNP [dm3] 2R_11653986_SNP [dm6]	G	C	3.744e^-4	0.733	UPSTREAM CG13198 INTRON Roc2
3R	14829261	3R_14829261_SNP [dm3] 3R_19003539_SNP [dm6]	G	A	3.746e^-4	0.733	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25330400	3R_25330400_SNP [dm3] 3R_29504678_SNP [dm6]	C	A	3.748e^-4	0.733	UPSTREAM Trc8 INTERGENIC	TF binding site mE1_TFBS_HSA
X	8888780	X_8888780_DEL [dm3] X_8994747_DEL [dm6]	GAAACG	G	3.755e^-4	0.733	INTRON rdgA & 1 other
3L	3814716	3L_3814716_SNP [dm3] 3L_3814716_SNP [dm6]	G	T	3.757e^-4	0.733	DOWNSTREAM CG12006 & 1 other INTRON Scsalpha EXON CR43932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15481754	3L_15481754_SNP [dm3] 3L_15488654_SNP [dm6]	G	A	3.764e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9413663	2L_9413663_SNP [dm3] 2L_9413663_SNP [dm6]	G	A	3.767e^-4	0.733	INTRON Shawl
3R	21205589	3R_21205589_SNP [dm3] 3R_25379867_SNP [dm6]	A	G	3.769e^-4	0.733	INTRON Fur1
2L	5885124	2L_5885124_SNP [dm3] 2L_5885124_SNP [dm6]	A	G	3.769e^-4	0.733	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
3L	20177939	3L_20177939_SNP [dm3] 3L_20184839_SNP [dm6]	T	A	3.769e^-4	0.733	INTRON CG42674
3R	6899488	3R_6899488_SNP [dm3] 3R_11073766_SNP [dm6]	A	T	3.772e^-4	0.733	INTERGENIC
3R	9951448	3R_9951448_SNP [dm3] 3R_14125726_SNP [dm6]	C	T	3.777e^-4	0.733	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12404467	X_12404467_SNP [dm3] X_12510434_SNP [dm6]	T	C	3.784e^-4	0.733	INTRON CG2556
2L	7294561	2L_7294561_SNP [dm3] 2L_7294561_SNP [dm6]	G	A	3.785e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	4395451	3R_4395451_SNP [dm3] 3R_8569729_SNP [dm6]	C	T	3.788e^-4	0.733	DOWNSTREAM Cenp-C INTERGENIC
2L	5263560	2L_5263560_SNP [dm3] 2L_5263560_SNP [dm6]	C	T	3.789e^-4	0.733	UPSTREAM Cyp4ac1 INTRON tkv
X	20452327	X_20452327_SNP [dm3] X_20581300_SNP [dm6]	T	A	3.790e^-4	0.733	INTERGENIC
3R	11187867	3R_11187867_SNP [dm3] 3R_15362145_SNP [dm6]	C	T	3.792e^-4	0.733	SYNONYMOUS_CODING Trax UPSTREAM ldlCp DOWNSTREAM CG6171	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18953224	3L_18953224_SNP [dm3] 3L_18960124_SNP [dm6]	A	G	3.797e^-4	0.733	INTERGENIC
3L	10611772	3L_10611772_SNP [dm3] 3L_10618672_SNP [dm6]	T	G	3.798e^-4	0.733	INTERGENIC
X	16903777	X_16903777_INS [dm3] X_17009744_INS [dm6]	T	TT	3.800e^-4	0.733	INTRON CG45002
3R	25325673	3R_25325673_SNP [dm3] 3R_29499951_SNP [dm6]	A	G	3.806e^-4	0.733	SYNONYMOUS_CODING Trc8	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24878215	3R_24878215_SNP [dm3] 3R_29052493_SNP [dm6]	C	A	3.820e^-4	0.735	UPSTREAM CG11842 DOWNSTREAM CG11841 INTERGENIC
3R	12109678	3R_12109678_SNP [dm3] 3R_16283956_SNP [dm6]	A	T	3.843e^-4	0.737	INTRON gish
3R	25330575	3R_25330575_SNP [dm3] 3R_29504853_SNP [dm6]	T	A	3.846e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14824305	X_14824305_DEL [dm3] X_14930272_DEL [dm6]	CAC	C	3.848e^-4	0.737	UPSTREAM Flo2 INTRON Flo2	TF binding site BDTNP1_TFBS_prd
X	13351976	X_13351976_SNP [dm3] X_13457943_SNP [dm6]	T	A	3.851e^-4	0.737	UPSTREAM CG34324 INTRON Neto
2L	6664794	2L_6664794_SNP [dm3] 2L_6664794_SNP [dm6]	C	A	3.855e^-4	0.737	INTRON cup & 1 other	TF binding site mE1_TFBS_HSA
X	14368122	X_14368122_SNP [dm3] X_14474089_SNP [dm6]	G	A	3.857e^-4	0.737	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5606173	X_5606173_SNP [dm3] X_5712140_SNP [dm6]	T	G	3.859e^-4	0.737	INTRON CG33080
2L	9410031	2L_9410031_SNP [dm3] 2L_9410031_SNP [dm6]	T	A	3.868e^-4	0.737	INTRON Shawl
2L	9413245	2L_9413245_SNP [dm3] 2L_9413245_SNP [dm6]	A	G	3.870e^-4	0.737	INTRON Shawl
X	21145839	X_21145839_SNP [dm3] X_21274812_SNP [dm6]	A	C	3.873e^-4	0.737	INTRON CG32521
3R	11515693	3R_11515693_SNP [dm3] 3R_15689971_SNP [dm6]	A	G	3.880e^-4	0.737	UTR_3_PRIME pxb
X	4105097	X_4105097_SNP [dm3] X_4211064_SNP [dm6]	G	T	3.882e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10579754	3L_10579754_SNP [dm3] 3L_10586654_SNP [dm6]	A	T	3.883e^-4	0.737	INTRON A2bp1
3R	4768475	3R_4768475_SNP [dm3] 3R_8942753_SNP [dm6]	C	A	3.906e^-4	0.741	NON_SYNONYMOUS_CODING skap DOWNSTREAM CG11964 & 1 other
3L	10611682	3L_10611682_SNP [dm3] 3L_10618582_SNP [dm6]	G	T	3.914e^-4	0.742	INTERGENIC
3R	16874594	3R_16874594_SNP [dm3] 3R_21048872_SNP [dm6]	C	T	3.917e^-4	0.742	UPSTREAM CG7079 INTERGENIC
3L	10747140	3L_10747140_SNP [dm3] 3L_10754040_SNP [dm6]	C	T	3.921e^-4	0.742	INTERGENIC
2R	17278083	2R_17278083_SNP [dm3] 2R_21390578_SNP [dm6]	A	G	3.930e^-4	0.742	SPLICE_SITE_REGION Acox57D-d INTRON Acox57D-d	TF binding site mE1_TFBS_cad
3R	13810950	3R_13810950_SNP [dm3] 3R_17985228_SNP [dm6]	T	A	3.930e^-4	0.742	INTRON cpo
3L	10910362	3L_10910362_SNP [dm3] 3L_10917262_SNP [dm6]	T	A	3.934e^-4	0.742	INTERGENIC
3R	17182027	3R_17182027_SNP [dm3] 3R_21356305_SNP [dm6]	C	A	3.942e^-4	0.742	START_GAINED pre-mod_mdg4_-B UTR_5_PRIME pre-mod_mdg4_-B UTR_3_PRIME pre-mod_mdg4_-I & 3 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	7337404	3R_7337404_SNP [dm3] 3R_11511682_SNP [dm6]	T	C	3.945e^-4	0.742	INTERGENIC
3L	6356627	3L_6356627_SNP [dm3] 3L_6363527_SNP [dm6]	C	G	3.945e^-4	0.742	INTERGENIC
3L	2004753	3L_2004753_SNP [dm3] 3L_2004753_SNP [dm6]	G	A	3.949e^-4	0.742	DOWNSTREAM CG42841 INTRON CG42841
3L	2148749	3L_2148749_DEL [dm3] 3L_2148749_DEL [dm6]	ACATTTCTTTTTGT...	A	3.953e^-4	0.742	INTRON zormin
3R	25313021	3R_25313021_SNP [dm3] 3R_29487299_SNP [dm6]	A	G	3.967e^-4	0.743	SPLICE_SITE_REGION CG2321 DOWNSTREAM Ptp99A INTRON CG2321

By genomic position
Variant impact
Gene name

mn_Protein_Pooled phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results