DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.931e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.08866

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	6.606	0.0368

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2106 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14470081	3R_14470081_SNP [dm3] 3R_18644359_SNP [dm6]	G	C	8.062e^-7	0.878	INTRON qin
X	5445429	X_5445429_SNP [dm3] X_5551396_SNP [dm6]	C	T	1.170e^-6	0.878	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	6205618	X_6205618_SNP [dm3] X_6311585_SNP [dm6]	T	G	1.522e^-6	0.878	INTRON CG15894
3L	826239	3L_826239_SNP [dm3] 3L_826239_SNP [dm6]	A	T	2.618e^-6	0.878	DOWNSTREAM CG13900 & 2 others INTERGENIC
2R	8611939	2R_8611939_SNP [dm3] 2R_12724434_SNP [dm6]	A	G	3.096e^-6	0.878	INTRON CG42663
2R	13833195	2R_13833195_SNP [dm3] 2R_17945690_SNP [dm6]	A	G	3.675e^-6	0.878	INTERGENIC
3R	14470817	3R_14470817_SNP [dm3] 3R_18645095_SNP [dm6]	C	A	6.164e^-6	0.878	SYNONYMOUS_CODING qin
3R	14470809	3R_14470809_SNP [dm3] 3R_18645087_SNP [dm6]	A	G	6.240e^-6	0.878	NON_SYNONYMOUS_CODING qin
3R	21408483	3R_21408483_SNP [dm3] 3R_25582761_SNP [dm6]	C	T	6.667e^-6	0.878	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
3L	20338347	3L_20338347_SNP [dm3] 3L_20345247_SNP [dm6]	T	C	6.832e^-6	0.878	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
3L	19255763	3L_19255763_SNP [dm3] 3L_19262663_SNP [dm6]	T	C	7.607e^-6	0.878	UTR_3_PRIME Max DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_cad
2R	14559079	2R_14559079_SNP [dm3] 2R_18671574_SNP [dm6]	A	G	1.145e^-5	0.878	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15064256	2R_15064256_SNP [dm3] 2R_19176751_SNP [dm6]	T	C	1.168e^-5	0.878	SPLICE_SITE_REGION CG10737 INTRON CG10737
2L	4901956	2L_4901956_SNP [dm3] 2L_4901956_SNP [dm6]	A	G	1.224e^-5	0.878	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6205634	X_6205634_SNP [dm3] X_6311601_SNP [dm6]	A	C	1.262e^-5	0.878	INTRON CG15894
X	6205670	X_6205670_DEL [dm3] X_6311637_DEL [dm6]	CTTTC	C	1.262e^-5	0.878	INTRON CG15894
X	5445409	X_5445409_SNP [dm3] X_5551376_SNP [dm6]	C	T	1.287e^-5	0.878	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	5507374	X_5507374_SNP [dm3] X_5613341_SNP [dm6]	A	G	1.343e^-5	0.878	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2L	1197440	2L_1197440_SNP [dm3] 2L_1197440_SNP [dm6]	C	T	1.345e^-5	0.878	DOWNSTREAM CG5001 INTERGENIC
3R	8138129	3R_8138129_SNP [dm3] 3R_12312407_SNP [dm6]	G	A	1.360e^-5	0.878	NON_SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3R	18541902	3R_18541902_SNP [dm3] 3R_22716180_SNP [dm6]	A	G	1.555e^-5	0.878	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1099224	2R_1099224_SNP [dm3] 2R_5211719_SNP [dm6]	A	T	1.601e^-5	0.878	INTRON Nipped-A	transposable element FlyBase
X	6417998	X_6417998_SNP [dm3] X_6523965_SNP [dm6]	A	T	1.743e^-5	0.878	UTR_5_PRIME CG42340 UPSTREAM CG3918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21864326	3R_21864326_SNP [dm3] 3R_26038604_SNP [dm6]	C	T	1.794e^-5	0.878	DOWNSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3104072	2L_3104072_SNP [dm3] 2L_3104072_SNP [dm6]	A	C	1.878e^-5	0.878	INTRON toc
3L	9174610	3L_9174610_SNP [dm3] 3L_9181510_SNP [dm6]	G	A	1.912e^-5	0.878	INTRON Rdl
3R	26095970	3R_26095970_SNP [dm3] 3R_30270248_SNP [dm6]	C	A	2.100e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23254918	3R_23254918_SNP [dm3] 3R_27429196_SNP [dm6]	A	G	2.196e^-5	0.878	INTRON side
3R	22381901	3R_22381901_SNP [dm3] 3R_26556179_SNP [dm6]	A	T	2.292e^-5	0.878	INTRON scrib	TF binding site mE1_TFBS_cnc
2L	8221681	2L_8221681_SNP [dm3] 2L_8221681_SNP [dm6]	G	C	2.294e^-5	0.878	SYNONYMOUS_CODING Pvr UPSTREAM Snx6
3R	13797907	3R_13797907_SNP [dm3] 3R_17972185_SNP [dm6]	A	G	2.301e^-5	0.878	INTRON cpo
2R	15064258	2R_15064258_SNP [dm3] 2R_19176753_SNP [dm6]	C	T	2.303e^-5	0.878	INTRON CG10737
3L	4724709	3L_4724709_SNP [dm3] 3L_4724709_SNP [dm6]	T	C	2.321e^-5	0.878	INTRON RhoGEF64C
3L	10732808	3L_10732808_SNP [dm3] 3L_10739708_SNP [dm6]	T	A	2.355e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	788550	3L_788550_SNP [dm3] 3L_788550_SNP [dm6]	A	T	2.558e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	11938442	X_11938442_SNP [dm3] X_12044409_SNP [dm6]	T	C	2.746e^-5	0.878	INTRON CR43960 & 1 other
X	4274263	X_4274263_SNP [dm3] X_4380230_SNP [dm6]	C	A	2.781e^-5	0.878	UPSTREAM CG12688 INTERGENIC
2R	6788862	2R_6788862_SNP [dm3] 2R_10901357_SNP [dm6]	G	T	2.815e^-5	0.878	INTERGENIC
X	3068864	X_3068864_SNP [dm3] X_3174831_SNP [dm6]	G	T	2.823e^-5	0.878	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	13589843	3R_13589843_SNP [dm3] 3R_17764121_SNP [dm6]	A	G	2.830e^-5	0.878	UPSTREAM TyrR INTERGENIC
2R	1099034	2R_1099034_SNP [dm3] 2R_5211529_SNP [dm6]	A	T	2.837e^-5	0.878	INTRON Nipped-A
3R	11160926	3R_11160926_SNP [dm3] 3R_15335204_SNP [dm6]	C	T	3.030e^-5	0.878	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3L	2124997	3L_2124997_DEL [dm3] 3L_2124997_DEL [dm6]	AA	A	3.078e^-5	0.878	INTRON zormin
2R	4637431	2R_4637431_SNP [dm3] 2R_8749926_SNP [dm6]	C	T	3.113e^-5	0.878	INTRON CG8740
X	3068870	X_3068870_SNP [dm3] X_3174837_SNP [dm6]	C	T	3.143e^-5	0.878	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	23254891	3R_23254891_SNP [dm3] 3R_27429169_SNP [dm6]	T	A	3.149e^-5	0.878	INTRON side
3L	21771994	3L_21771994_SNP [dm3] 3L_21778894_SNP [dm6]	C	G	3.150e^-5	0.878	DOWNSTREAM CG42552 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10082453	X_10082453_SNP [dm3] X_10188420_SNP [dm6]	T	G	3.190e^-5	0.878	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
X	3068883	X_3068883_SNP [dm3] X_3174850_SNP [dm6]	T	C	3.200e^-5	0.878	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	19457836	3R_19457836_SNP [dm3] 3R_23632114_SNP [dm6]	A	G	3.202e^-5	0.878	NON_SYNONYMOUS_CODING CG31145 INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3630357	2L_3630357_SNP [dm3] 2L_3630357_SNP [dm6]	T	A	3.340e^-5	0.878	INTRON for
3R	23250529	3R_23250529_SNP [dm3] 3R_27424807_SNP [dm6]	A	C	3.350e^-5	0.878	INTRON side
3L	1369234	3L_1369234_SNP [dm3] 3L_1369234_SNP [dm6]	C	A	3.377e^-5	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25236437	3R_25236437_SNP [dm3] 3R_29410715_SNP [dm6]	C	A	3.442e^-5	0.878	INTRON Ptp99A
X	3068874	X_3068874_SNP [dm3] X_3174841_SNP [dm6]	G	C	3.494e^-5	0.878	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	3104089	2L_3104089_SNP [dm3] 2L_3104089_SNP [dm6]	G	A	3.498e^-5	0.878	INTRON toc
2R	12967499	2R_12967499_SNP [dm3] 2R_17079994_SNP [dm6]	T	G	3.503e^-5	0.878	INTRON CG30460
3R	26095935	3R_26095935_INS [dm3] 3R_30270213_INS [dm6]	T	TATT	3.568e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16301894	X_16301894_SNP [dm3] X_16407861_SNP [dm6]	G	A	3.603e^-5	0.878	UPSTREAM CG4301 INTRON CG4301
3L	17978870	3L_17978870_SNP [dm3] 3L_17985770_SNP [dm6]	G	A	3.628e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	6820918	2L_6820918_SNP [dm3] 2L_6820918_SNP [dm6]	G	A	3.643e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6622655	2R_6622655_INS [dm3] 2R_10735150_INS [dm6]	A	AACTTGTGCAACCGTGAAAG...	3.719e^-5	0.878	UPSTREAM CG7220 INTRON CG7220
3L	9130308	3L_9130308_SNP [dm3] 3L_9137208_SNP [dm6]	T	C	3.751e^-5	0.878	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	21207647	X_21207647_DEL [dm3] X_21336620_DEL [dm6]	TTGGAAATTATTG...	AAAAA	3.775e^-5	0.878	INTRON tty
3R	24469790	3R_24469790_SNP [dm3] 3R_28644068_SNP [dm6]	A	G	3.823e^-5	0.878	INTERGENIC
2R	9789533	2R_9789533_SNP [dm3] 2R_13902028_SNP [dm6]	A	T	3.944e^-5	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10061566	2L_10061566_SNP [dm3] 2L_10061566_SNP [dm6]	G	C	4.015e^-5	0.878	INTRON Spn31A
3L	10802715	3L_10802715_SNP [dm3] 3L_10809615_SNP [dm6]	A	C	4.046e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16060378	3R_16060378_SNP [dm3] 3R_20234656_SNP [dm6]	C	T	4.128e^-5	0.878	INTRON Nlg4
X	20406098	X_20406098_SNP [dm3] X_20535071_SNP [dm6]	T	C	4.216e^-5	0.878	INTERGENIC
3L	14433920	3L_14433920_SNP [dm3] 3L_14440820_SNP [dm6]	T	G	4.242e^-5	0.878	INTRON bbg
3L	4382190	3L_4382190_SNP [dm3] 3L_4382190_SNP [dm6]	G	C	4.248e^-5	0.878	UPSTREAM CG32240 INTERGENIC
3L	10802725	3L_10802725_SNP [dm3] 3L_10809625_SNP [dm6]	C	T	4.262e^-5	0.878	INTERGENIC
3L	17978963	3L_17978963_SNP [dm3] 3L_17985863_SNP [dm6]	G	A	4.316e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13632652	2L_13632652_SNP [dm3] 2L_13632652_SNP [dm6]	T	A	4.358e^-5	0.878	DOWNSTREAM CR43410 INTRON kuz
X	20405950	X_20405950_SNP [dm3] X_20534923_SNP [dm6]	G	C	4.389e^-5	0.878	INTERGENIC
3L	2856152	3L_2856152_SNP [dm3] 3L_2856152_SNP [dm6]	C	G	4.499e^-5	0.878	INTRON CG43444
X	13904703	X_13904703_SNP [dm3] X_14010670_SNP [dm6]	T	A	4.561e^-5	0.878	INTERGENIC
X	3385990	X_3385990_SNP [dm3] X_3491957_SNP [dm6]	G	A	4.595e^-5	0.878	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	6833206	3R_6833206_SNP [dm3] 3R_11007484_SNP [dm6]	A	G	4.736e^-5	0.878	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5481087	3R_5481087_SNP [dm3] 3R_9655365_SNP [dm6]	A	C	4.774e^-5	0.878	INTRON CG9492	TF binding site mE1_TFBS_chinmo
X	12181760	X_12181760_SNP [dm3] X_12287727_SNP [dm6]	A	G	4.884e^-5	0.878	INTRON Ten-a
2R	15228543	2R_15228543_SNP [dm3] 2R_19341038_SNP [dm6]	T	A	4.904e^-5	0.878	UPSTREAM CG9975 INTRON Rgk1
3R	26456909	3R_26456909_SNP [dm3] 3R_30631187_SNP [dm6]	G	T	4.952e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9789530	2R_9789530_SNP [dm3] 2R_13902025_SNP [dm6]	T	C	4.957e^-5	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9116213	3R_9116213_SNP [dm3] 3R_13290491_SNP [dm6]	A	T	4.960e^-5	0.878	UPSTREAM Osi22 INTERGENIC
3R	7408051	3R_7408051_SNP [dm3] 3R_11582329_SNP [dm6]	G	A	5.014e^-5	0.878	UPSTREAM wkd DOWNSTREAM CG5342 INTRON wkd	TF binding site BDTNP1_TFBS_dl
3R	18132155	3R_18132155_SNP [dm3] 3R_22306433_SNP [dm6]	G	T	5.169e^-5	0.878	INTERGENIC
3R	11715538	3R_11715538_SNP [dm3] 3R_15889816_SNP [dm6]	A	G	5.209e^-5	0.878	SYNONYMOUS_CODING CG14877
2L	1185242	2L_1185242_SNP [dm3] 2L_1185242_SNP [dm6]	C	T	5.225e^-5	0.878	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7271559	2L_7271559_SNP [dm3] 2L_7271559_SNP [dm6]	G	C	5.247e^-5	0.878	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	1936957	X_1936957_SNP [dm3] X_2042924_SNP [dm6]	G	C	5.248e^-5	0.878	UTR_3_PRIME CG4325 UPSTREAM Actn & 1 other DOWNSTREAM CG4325 INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	12086489	2L_12086489_SNP [dm3] 2L_12086489_SNP [dm6]	T	A	5.256e^-5	0.878	UPSTREAM CR44593 & 1 other DOWNSTREAM CR44592 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10701935	3R_10701935_SNP [dm3] 3R_14876213_SNP [dm6]	G	A	5.426e^-5	0.878	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13439845	2L_13439845_SNP [dm3] 2L_13439845_SNP [dm6]	T	A	5.427e^-5	0.878	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
2L	10548500	2L_10548500_SNP [dm3] 2L_10548500_SNP [dm6]	A	T	5.496e^-5	0.878	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18132145	3R_18132145_SNP [dm3] 3R_22306423_SNP [dm6]	T	G	5.536e^-5	0.878	INTERGENIC
2R	14559167	2R_14559167_SNP [dm3] 2R_18671662_SNP [dm6]	T	C	5.573e^-5	0.878	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15064270	2R_15064270_SNP [dm3] 2R_19176765_SNP [dm6]	T	C	5.672e^-5	0.878	INTRON CG10737
2R	18376506	2R_18376506_SNP [dm3] 2R_22489001_SNP [dm6]	G	A	5.676e^-5	0.878	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
3R	14988385	3R_14988385_DEL [dm3] 3R_19162663_DEL [dm6]	ATCGTGCATA	A	5.685e^-5	0.878	UPSTREAM CG42358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18679971	2L_18679971_SNP [dm3] 2L_18679971_SNP [dm6]	C	T	5.690e^-5	0.878	NON_SYNONYMOUS_CODING tos INTRON CG31751
3R	11906190	3R_11906190_SNP [dm3] 3R_16080468_SNP [dm6]	C	T	5.719e^-5	0.878	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	5747883	2R_5747883_SNP [dm3] 2R_9860378_SNP [dm6]	G	A	5.746e^-5	0.878	UTR_5_PRIME CG1516 UPSTREAM CR44293 INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6820881	2L_6820881_SNP [dm3] 2L_6820881_SNP [dm6]	A	G	5.848e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9173719	3R_9173719_SNP [dm3] 3R_13347997_SNP [dm6]	G	T	5.895e^-5	0.878	INTERGENIC
3L	1369167	3L_1369167_SNP [dm3] 3L_1369167_SNP [dm6]	T	G	6.007e^-5	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	15228563	2R_15228563_DEL [dm3] 2R_19341058_DEL [dm6]	CGCAGAA	C	6.062e^-5	0.878	UPSTREAM CG9975 INTRON Rgk1
2L	7467863	2L_7467863_SNP [dm3] 2L_7467863_SNP [dm6]	A	G	6.076e^-5	0.878	INTRON CG6055	TF binding site mE1_TFBS_inv
3L	1369305	3L_1369305_SNP [dm3] 3L_1369305_SNP [dm6]	C	T	6.127e^-5	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	3104090	2L_3104090_SNP [dm3] 2L_3104090_SNP [dm6]	C	G	6.214e^-5	0.878	INTRON toc
3L	10732683	3L_10732683_SNP [dm3] 3L_10739583_SNP [dm6]	G	T	6.289e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7528898	3L_7528898_SNP [dm3] 3L_7535798_SNP [dm6]	C	G	6.339e^-5	0.878	INTRON lqf
3L	6933218	3L_6933218_SNP [dm3] 3L_6940118_SNP [dm6]	T	A	6.366e^-5	0.878	UPSTREAM CR45412 INTERGENIC
3L	7408167	3L_7408167_SNP [dm3] 3L_7415067_SNP [dm6]	C	G	6.381e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25370808	3R_25370808_SNP [dm3] 3R_29545086_SNP [dm6]	A	G	6.557e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15895298	2R_15895298_INS [dm3] 2R_20007793_INS [dm6]	T	TGT	6.643e^-5	0.878	DOWNSTREAM CR44628 INTERGENIC
2R	8870482	2R_8870482_SNP [dm3] 2R_12982977_SNP [dm6]	G	T	6.645e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11742037	2L_11742037_SNP [dm3] 2L_11742037_SNP [dm6]	T	C	6.804e^-5	0.878	SYNONYMOUS_CODING Vha100-5	TF binding site mE1_TFBS_chinmo
3L	1369243	3L_1369243_SNP [dm3] 3L_1369243_SNP [dm6]	A	G	6.808e^-5	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	9689759	X_9689759_SNP [dm3] X_9795726_SNP [dm6]	T	A	6.819e^-5	0.878	INTRON CG32698
2L	10546459	2L_10546459_SNP [dm3] 2L_10546459_SNP [dm6]	G	T	6.823e^-5	0.878	INTRON Trim9
2R	8497098	2R_8497098_SNP [dm3] 2R_12609593_SNP [dm6]	C	A	6.853e^-5	0.878	SYNONYMOUS_CODING Amph INTRON Amph
3R	6838380	3R_6838380_SNP [dm3] 3R_11012658_SNP [dm6]	A	T	6.955e^-5	0.878	INTRON CG34114
2R	8582956	2R_8582956_SNP [dm3] 2R_12695451_SNP [dm6]	G	A	6.967e^-5	0.878	INTERGENIC
2L	10548506	2L_10548506_SNP [dm3] 2L_10548506_SNP [dm6]	C	A	6.999e^-5	0.878	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12691864	2R_12691864_DEL [dm3] 2R_16804359_DEL [dm6]	CTTAC	C	7.159e^-5	0.878	INTERGENIC
3L	12145264	3L_12145264_SNP [dm3] 3L_12152164_SNP [dm6]	A	G	7.219e^-5	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	6820876	2L_6820876_SNP [dm3] 2L_6820876_SNP [dm6]	T	C	7.293e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22312115	3R_22312115_SNP [dm3] 3R_26486393_SNP [dm6]	A	G	7.352e^-5	0.878	INTRON plum
3L	17978973	3L_17978973_SNP [dm3] 3L_17985873_SNP [dm6]	G	A	7.536e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17978983	3L_17978983_SNP [dm3] 3L_17985883_SNP [dm6]	T	A	7.536e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17978990	3L_17978990_MNP [dm3] 3L_17985890_MNP [dm6]	TTT	CAC	7.536e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17211349	3R_17211349_SNP [dm3] 3R_21385627_SNP [dm6]	C	G	7.600e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	22068485	3R_22068485_SNP [dm3] 3R_26242763_SNP [dm6]	A	G	7.612e^-5	0.878	INTRON CR42745
3L	9130322	3L_9130322_SNP [dm3] 3L_9137222_SNP [dm6]	T	C	7.613e^-5	0.878	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9649270	2L_9649270_SNP [dm3] 2L_9649270_SNP [dm6]	G	A	7.716e^-5	0.878	SYNONYMOUS_CODING Apoltp
2R	12965128	2R_12965128_SNP [dm3] 2R_17077623_SNP [dm6]	T	C	7.729e^-5	0.878	INTRON CG30460
X	2994768	X_2994768_SNP [dm3] X_3100735_SNP [dm6]	T	G	8.014e^-5	0.878	INTRON kirre
3R	18845667	3R_18845667_SNP [dm3] 3R_23019945_SNP [dm6]	A	G	8.048e^-5	0.878	INTERGENIC
2R	6165723	2R_6165723_SNP [dm3] 2R_10278218_SNP [dm6]	C	A	8.146e^-5	0.878	UPSTREAM CAP INTRON CAP
X	21207635	X_21207635_SNP [dm3] X_21336608_SNP [dm6]	C	G	8.214e^-5	0.878	INTRON tty
3L	1598943	3L_1598943_SNP [dm3] 3L_1598943_SNP [dm6]	G	C	8.229e^-5	0.878	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_chinmo
3L	17978984	3L_17978984_SNP [dm3] 3L_17985884_SNP [dm6]	G	T	8.258e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6781909	2R_6781909_SNP [dm3] 2R_10894404_SNP [dm6]	C	T	8.391e^-5	0.878	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25343784	3R_25343784_SNP [dm3] 3R_29518062_SNP [dm6]	C	A	8.402e^-5	0.878	INTERGENIC
3R	18132146	3R_18132146_SNP [dm3] 3R_22306424_SNP [dm6]	T	A	8.589e^-5	0.878	INTERGENIC
3L	1060831	3L_1060831_SNP [dm3] 3L_1060831_SNP [dm6]	A	T	8.668e^-5	0.878	INTRON bab1
X	5874474	X_5874474_SNP [dm3] X_5980441_SNP [dm6]	G	A	8.677e^-5	0.878	INTRON Grip
2R	12964987	2R_12964987_SNP [dm3] 2R_17077482_SNP [dm6]	C	G	8.707e^-5	0.878	INTRON CG30460
X	10503366	X_10503366_SNP [dm3] X_10609333_SNP [dm6]	G	A	8.780e^-5	0.878	INTRON CG43347
2L	15515883	2L_15515883_SNP [dm3] 2L_15515883_SNP [dm6]	G	C	8.782e^-5	0.878	EXON CR44864
3L	1597452	3L_1597452_SNP [dm3] 3L_1597452_SNP [dm6]	T	C	8.889e^-5	0.878	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16058027	3R_16058027_SNP [dm3] 3R_20232305_SNP [dm6]	A	T	8.889e^-5	0.878	INTRON Nlg4
2L	15277585	2L_15277585_SNP [dm3] 2L_15277585_SNP [dm6]	G	T	8.957e^-5	0.878	UPSTREAM CR43682 INTERGENIC
3R	8757777	3R_8757777_SNP [dm3] 3R_12932055_SNP [dm6]	C	G	9.014e^-5	0.878	UPSTREAM CR44236 INTRON beat-Vb	TF binding site mE1_TFBS_chinmo
3L	2603700	3L_2603700_SNP [dm3] 3L_2603700_SNP [dm6]	A	T	9.118e^-5	0.878	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14973757	3R_14973757_SNP [dm3] 3R_19148035_SNP [dm6]	A	G	9.143e^-5	0.878	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15523539	2L_15523539_SNP [dm3] 2L_15523539_SNP [dm6]	C	T	9.203e^-5	0.878	EXON CR43761
3L	10373527	3L_10373527_DEL [dm3] 3L_10380427_DEL [dm6]	TT	T	9.306e^-5	0.878	INTERGENIC
X	3385900	X_3385900_SNP [dm3] X_3491867_SNP [dm6]	T	C	9.347e^-5	0.878	SYNONYMOUS_CODING Gas8 DOWNSTREAM CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	21973631	3R_21973631_SNP [dm3] 3R_26147909_SNP [dm6]	T	C	9.348e^-5	0.878	INTERGENIC
2R	6785120	2R_6785120_SNP [dm3] 2R_10897615_SNP [dm6]	G	A	9.462e^-5	0.878	DOWNSTREAM Rpb5 & 1 other INTRON CG7712	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
X	1963908	X_1963908_SNP [dm3] X_2069875_SNP [dm6]	C	A	9.480e^-5	0.878	DOWNSTREAM CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_Trl
X	4710266	X_4710266_SNP [dm3] X_4816233_SNP [dm6]	C	G	9.603e^-5	0.878	INTERGENIC
X	6205698	X_6205698_SNP [dm3] X_6311665_SNP [dm6]	T	C	9.609e^-5	0.878	INTRON CG15894
3L	10802714	3L_10802714_SNP [dm3] 3L_10809614_SNP [dm6]	A	C	9.625e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7513881	2L_7513881_SNP [dm3] 2L_7513881_SNP [dm6]	T	C	9.670e^-5	0.878	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25880012	3R_25880012_SNP [dm3] 3R_30054290_SNP [dm6]	A	G	9.670e^-5	0.878	SYNONYMOUS_CODING CG7946 DOWNSTREAM spn-A	TF binding site mE1_TFBS_sens
2L	5372015	2L_5372015_SNP [dm3] 2L_5372015_SNP [dm6]	A	G	9.678e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10199048	3R_10199048_SNP [dm3] 3R_14373326_SNP [dm6]	T	C	9.728e^-5	0.878	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15161786	2L_15161786_SNP [dm3] 2L_15161786_SNP [dm6]	A	C	9.734e^-5	0.878	DOWNSTREAM CG4168 & 1 other INTERGENIC
3L	17978987	3L_17978987_SNP [dm3] 3L_17985887_SNP [dm6]	T	G	9.990e^-5	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10701937	3R_10701937_SNP [dm3] 3R_14876215_SNP [dm6]	G	A	9.996e^-5	0.878	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15868154	3R_15868154_SNP [dm3] 3R_20042432_SNP [dm6]	T	A	1.002e^-4	0.878	UPSTREAM Indy-2 & 1 other INTRON CG17193
2R	11218992	2R_11218992_SNP [dm3] 2R_15331487_SNP [dm6]	C	A	1.010e^-4	0.878	UTR_5_PRIME Hr51 UPSTREAM CR44371	TF binding site BDTNP1_TFBS_dl
3R	11709513	3R_11709513_SNP [dm3] 3R_15883791_SNP [dm6]	T	C	1.018e^-4	0.878	INTERGENIC
2L	3415869	2L_3415869_SNP [dm3] 2L_3415869_SNP [dm6]	G	C	1.018e^-4	0.878	UPSTREAM CG31952 INTRON pgant2
X	6816363	X_6816363_SNP [dm3] X_6922330_SNP [dm6]	C	T	1.027e^-4	0.878	INTRON CG14431
3R	26490414	3R_26490414_DEL [dm3] 3R_30664692_DEL [dm6]	TT	T	1.032e^-4	0.878	UPSTREAM CR45191 INTERGENIC
3L	11440989	3L_11440989_SNP [dm3] 3L_11447889_SNP [dm6]	C	T	1.050e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8452205	3R_8452205_SNP [dm3] 3R_12626483_SNP [dm6]	T	A	1.050e^-4	0.878	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7095768	2L_7095768_SNP [dm3] 2L_7095768_SNP [dm6]	G	A	1.056e^-4	0.878	INTERGENIC
2R	20143724	2R_20143724_SNP [dm3] 2R_24256201_SNP [dm6]	G	A	1.065e^-4	0.878	INTRON CG13575	TF binding site mE1_TFBS_chinmo
2L	4487433	2L_4487433_SNP [dm3] 2L_4487433_SNP [dm6]	T	C	1.076e^-4	0.878	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17965732	3R_17965732_SNP [dm3] 3R_22140010_SNP [dm6]	C	A	1.080e^-4	0.878	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12859693	3L_12859693_DEL [dm3] 3L_12866593_DEL [dm6]	TCCC	T	1.086e^-4	0.878	INTERGENIC
3R	13788564	3R_13788564_SNP [dm3] 3R_17962842_SNP [dm6]	T	A	1.087e^-4	0.878	INTRON cpo
3L	17978986	3L_17978986_SNP [dm3] 3L_17985886_SNP [dm6]	A	T	1.089e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3109734	2L_3109734_INS [dm3] 2L_3109734_INS [dm6]	A	AACA	1.090e^-4	0.878	CODON_INSERTION PpD6 INTRON toc
3L	2322146	3L_2322146_SNP [dm3] 3L_2322146_SNP [dm6]	A	G	1.091e^-4	0.878	UPSTREAM MsR1 INTERGENIC
2R	14558309	2R_14558309_SNP [dm3] 2R_18670804_SNP [dm6]	C	A	1.092e^-4	0.878	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	18132132	3R_18132132_SNP [dm3] 3R_22306410_SNP [dm6]	G	A	1.094e^-4	0.878	INTERGENIC
2R	19021021	2R_19021021_SNP [dm3] 2R_23133498_SNP [dm6]	T	A	1.096e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8870310	2R_8870310_SNP [dm3] 2R_12982805_SNP [dm6]	A	C	1.097e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17978977	3L_17978977_DEL [dm3] 3L_17985877_DEL [dm6]	GCA	G	1.101e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13725195	2L_13725195_SNP [dm3] 2L_13725195_SNP [dm6]	T	A	1.103e^-4	0.878	INTERGENIC
2L	903827	2L_903827_SNP [dm3] 2L_903827_SNP [dm6]	C	T	1.104e^-4	0.878	UPSTREAM CR45261 INTERGENIC
X	3068641	X_3068641_SNP [dm3] X_3174608_SNP [dm6]	G	T	1.106e^-4	0.878	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12989207	X_12989207_SNP [dm3] X_13095174_SNP [dm6]	C	G	1.113e^-4	0.878	NON_SYNONYMOUS_CODING CG2200 DOWNSTREAM CG43313
3L	3794235	3L_3794235_SNP [dm3] 3L_3794235_SNP [dm6]	G	A	1.119e^-4	0.878	INTRON CG32264
3R	13100340	3R_13100340_SNP [dm3] 3R_17274618_SNP [dm6]	G	A	1.120e^-4	0.878	INTERGENIC
3L	16489046	3L_16489046_SNP [dm3] 3L_16495946_SNP [dm6]	T	A	1.120e^-4	0.878	UPSTREAM CG42514 INTRON CG33158 & 2 others
2R	586799	2R_586799_SNP [dm3] 2R_4699294_SNP [dm6]	G	A	1.130e^-4	0.878	INTRON Nipped-B
X	8781989	X_8781989_SNP [dm3] X_8887956_SNP [dm6]	T	A	1.135e^-4	0.878	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	5507417	X_5507417_SNP [dm3] X_5613384_SNP [dm6]	A	G	1.150e^-4	0.878	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
3L	6611836	3L_6611836_SNP [dm3] 3L_6618736_SNP [dm6]	A	G	1.166e^-4	0.878	UTR_3_PRIME CG8398 DOWNSTREAM CG8398
X	4791837	X_4791837_SNP [dm3] X_4897804_SNP [dm6]	T	G	1.168e^-4	0.878	INTRON CG42594
X	14619768	X_14619768_SNP [dm3] X_14725735_SNP [dm6]	C	A	1.169e^-4	0.878	INTRON NetB
2L	13632489	2L_13632489_SNP [dm3] 2L_13632489_SNP [dm6]	C	T	1.170e^-4	0.878	DOWNSTREAM CR43410 INTRON kuz
3L	10314927	3L_10314927_SNP [dm3] 3L_10321827_SNP [dm6]	G	C	1.170e^-4	0.878	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12145253	3L_12145253_SNP [dm3] 3L_12152153_SNP [dm6]	G	A	1.174e^-4	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	13532534	2R_13532534_DEL [dm3] 2R_17645029_DEL [dm6]	TTAATAACTACTCAC...	T	1.174e^-4	0.878	INTERGENIC
2R	6781901	2R_6781901_SNP [dm3] 2R_10894396_SNP [dm6]	G	A	1.177e^-4	0.878	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	10889184	2R_10889184_SNP [dm3] 2R_15001679_SNP [dm6]	T	C	1.190e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10630925	3L_10630925_SNP [dm3] 3L_10637825_SNP [dm6]	A	T	1.191e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4029361	2L_4029361_SNP [dm3] 2L_4029361_SNP [dm6]	A	G	1.217e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1600107	3L_1600107_INS [dm3] 3L_1600107_INS [dm6]	A	AA	1.218e^-4	0.878	UTR_3_PRIME CG13917 DOWNSTREAM CG12104
3R	1841240	3R_1841240_SNP [dm3] 3R_6015518_SNP [dm6]	T	C	1.219e^-4	0.878	INTERGENIC
X	16534377	X_16534377_SNP [dm3] X_16640344_SNP [dm6]	G	A	1.219e^-4	0.878	UTR_5_PRIME SmG UPSTREAM mthl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13532533	2R_13532533_SNP [dm3] 2R_17645028_SNP [dm6]	C	A	1.222e^-4	0.878	INTERGENIC
2R	1101653	2R_1101653_SNP [dm3] 2R_5214148_SNP [dm6]	A	T	1.223e^-4	0.878	INTRON Nipped-A
2R	15228583	2R_15228583_SNP [dm3] 2R_19341078_SNP [dm6]	G	A	1.227e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
2R	15228641	2R_15228641_SNP [dm3] 2R_19341136_SNP [dm6]	G	C	1.228e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
2R	17937857	2R_17937857_SNP [dm3] 2R_22050352_SNP [dm6]	T	C	1.230e^-4	0.878	INTERGENIC
3L	3263441	3L_3263441_SNP [dm3] 3L_3263441_SNP [dm6]	C	G	1.232e^-4	0.878	INTRON ckd
2R	5507592	2R_5507592_SNP [dm3] 2R_9620087_SNP [dm6]	A	G	1.234e^-4	0.878	INTRON Mmp2
2R	18025945	2R_18025945_SNP [dm3] 2R_22138440_SNP [dm6]	G	A	1.242e^-4	0.878	UPSTREAM CG11269 INTRON a
3R	19923880	3R_19923880_SNP [dm3] 3R_24098158_SNP [dm6]	G	C	1.243e^-4	0.878	INTRON 4EHP
3R	9436197	3R_9436197_SNP [dm3] 3R_13610475_SNP [dm6]	G	T	1.248e^-4	0.878	INTERGENIC
2R	5430191	2R_5430191_SNP [dm3] 2R_9542686_SNP [dm6]	G	A	1.259e^-4	0.878	UTR_3_PRIME CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22228780	3L_22228780_SNP [dm3] 3L_22235680_SNP [dm6]	G	C	1.267e^-4	0.878	INTRON olf413
X	10503445	X_10503445_SNP [dm3] X_10609412_SNP [dm6]	C	T	1.269e^-4	0.878	INTRON CG43347
3L	17595338	3L_17595338_SNP [dm3] 3L_17602238_SNP [dm6]	A	G	1.272e^-4	0.878	INTRON Eip74EF
3L	1369170	3L_1369170_SNP [dm3] 3L_1369170_SNP [dm6]	A	C	1.282e^-4	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6820961	2L_6820961_SNP [dm3] 2L_6820961_SNP [dm6]	C	A	1.288e^-4	0.878	UPSTREAM sens-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15447599	3R_15447599_SNP [dm3] 3R_19621877_SNP [dm6]	A	T	1.292e^-4	0.878	UPSTREAM CG6231 INTRON CG6231
2L	18066762	2L_18066762_INS [dm3] 2L_18066762_INS [dm6]	C	CC	1.293e^-4	0.878	INTRON rdo
2R	5514344	2R_5514344_DEL [dm3] 2R_9626839_DEL [dm6]	GAA	G	1.298e^-4	0.878	INTRON Mmp2
3L	17501749	3L_17501749_SNP [dm3] 3L_17508649_SNP [dm6]	A	C	1.300e^-4	0.878	SYNONYMOUS_CODING Oatp74D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21772932	3L_21772932_SNP [dm3] 3L_21779832_SNP [dm6]	A	G	1.307e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13397188	2R_13397188_INS [dm3] 2R_17509683_INS [dm6]	T	TT	1.309e^-4	0.878	UTR_5_PRIME CG34193 UPSTREAM CG34193
2L	15515887	2L_15515887_SNP [dm3] 2L_15515887_SNP [dm6]	T	G	1.315e^-4	0.878	EXON CR44864
X	10082399	X_10082399_SNP [dm3] X_10188366_SNP [dm6]	A	G	1.323e^-4	0.878	SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	4724628	3L_4724628_INS [dm3] 3L_4724628_INS [dm6]	T	TT	1.332e^-4	0.878	INTRON RhoGEF64C
3R	18132308	3R_18132308_SNP [dm3] 3R_22306586_SNP [dm6]	C	T	1.364e^-4	0.878	INTERGENIC
3R	24426229	3R_24426229_SNP [dm3] 3R_28600507_SNP [dm6]	G	T	1.372e^-4	0.878	UTR_5_PRIME Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
3L	22288239	3L_22288239_SNP [dm3] 3L_22295139_SNP [dm6]	A	G	1.384e^-4	0.878	UTR_3_PRIME Ten-m
2L	901217	2L_901217_SNP [dm3] 2L_901217_SNP [dm6]	T	C	1.419e^-4	0.878	UTR_3_PRIME Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15895320	2R_15895320_SNP [dm3] 2R_20007815_SNP [dm6]	T	G	1.420e^-4	0.878	DOWNSTREAM CR44628 INTERGENIC
3R	10694515	3R_10694515_SNP [dm3] 3R_14868793_SNP [dm6]	A	T	1.424e^-4	0.878	INTRON btsz
3R	15651734	3R_15651734_SNP [dm3] 3R_19826012_SNP [dm6]	T	A	1.429e^-4	0.878	INTRON bnl
3L	10630876	3L_10630876_SNP [dm3] 3L_10637776_SNP [dm6]	A	C	1.450e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13532562	2R_13532562_SNP [dm3] 2R_17645057_SNP [dm6]	G	T	1.450e^-4	0.878	INTERGENIC
3L	788548	3L_788548_SNP [dm3] 3L_788548_SNP [dm6]	T	C	1.452e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	20425963	X_20425963_INS [dm3] X_20554936_INS [dm6]	T	TGGT	1.453e^-4	0.878	INTRON RunxB
3R	14173584	3R_14173584_SNP [dm3] 3R_18347862_SNP [dm6]	A	T	1.458e^-4	0.878	INTRON CG15803
3R	26494627	3R_26494627_SNP [dm3] 3R_30668905_SNP [dm6]	C	T	1.461e^-4	0.878	INTERGENIC
3R	14647230	3R_14647230_SNP [dm3] 3R_18821508_SNP [dm6]	G	A	1.467e^-4	0.878	INTRON CG18208
3R	10118204	3R_10118204_SNP [dm3] 3R_14292482_SNP [dm6]	A	G	1.477e^-4	0.878	INTRON CG12207
X	5506959	X_5506959_SNP [dm3] X_5612926_SNP [dm6]	C	T	1.481e^-4	0.878	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1599714	3L_1599714_SNP [dm3] 3L_1599714_SNP [dm6]	G	A	1.484e^-4	0.878	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_sens
X	4667001	X_4667001_SNP [dm3] X_4772968_SNP [dm6]	C	T	1.489e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
4	1155347	4_1155347_SNP [dm3] 4_1134721_SNP [dm6]	A	G	1.490e^-4	0.878	UTR_3_PRIME CG11155 INTRON CG11155	transposable element FlyBase
2R	16929277	2R_16929277_SNP [dm3] 2R_21041772_SNP [dm6]	T	A	1.508e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7596374	2L_7596374_SNP [dm3] 2L_7596374_SNP [dm6]	A	C	1.513e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	1.516e^-4	0.878	INTERGENIC
3L	10630891	3L_10630891_SNP [dm3] 3L_10637791_SNP [dm6]	A	C	1.522e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15228592	2R_15228592_SNP [dm3] 2R_19341087_SNP [dm6]	T	A	1.523e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
2L	10873583	2L_10873583_DEL [dm3] 2L_10873583_DEL [dm6]	TGA	T	1.523e^-4	0.878	INTERGENIC
3R	27165408	3R_27165408_SNP [dm3] 3R_31339686_SNP [dm6]	C	G	1.537e^-4	0.878	INTRON CG34347
3L	2561270	3L_2561270_SNP [dm3] 3L_2561270_SNP [dm6]	A	C	1.538e^-4	0.878	INTRON msn
3R	19802407	3R_19802407_SNP [dm3] 3R_23976685_SNP [dm6]	T	C	1.557e^-4	0.878	SYNONYMOUS_CODING CG31140	TF binding site mE1_TFBS_chinmo
X	9487660	X_9487660_SNP [dm3] X_9593627_SNP [dm6]	C	T	1.566e^-4	0.878	INTERGENIC
3R	9185688	3R_9185688_SNP [dm3] 3R_13359966_SNP [dm6]	G	C	1.567e^-4	0.878	INTERGENIC
2L	10873469	2L_10873469_SNP [dm3] 2L_10873469_SNP [dm6]	G	T	1.568e^-4	0.878	INTERGENIC
X	3410225	X_3410225_SNP [dm3] X_3516192_SNP [dm6]	C	G	1.568e^-4	0.878	DOWNSTREAM CG13021 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4629881	2L_4629881_SNP [dm3] 2L_4629881_SNP [dm6]	A	C	1.580e^-4	0.878	INTERGENIC
3R	9136866	3R_9136866_SNP [dm3] 3R_13311144_SNP [dm6]	T	C	1.582e^-4	0.878	INTRON CG32473
3R	14173589	3R_14173589_SNP [dm3] 3R_18347867_SNP [dm6]	T	C	1.588e^-4	0.878	INTRON CG15803
2L	6448625	2L_6448625_SNP [dm3] 2L_6448625_SNP [dm6]	T	C	1.589e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
X	17621660	X_17621660_DEL [dm3] X_17727627_DEL [dm6]	GTGCCAG	G	1.592e^-4	0.878	INTRON CG42684
2L	10873468	2L_10873468_SNP [dm3] 2L_10873468_SNP [dm6]	A	T	1.594e^-4	0.878	INTERGENIC
3L	13852579	3L_13852579_SNP [dm3] 3L_13859479_SNP [dm6]	T	A	1.598e^-4	0.878	DOWNSTREAM CG8745 INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19506298	3R_19506298_SNP [dm3] 3R_23680576_SNP [dm6]	A	G	1.599e^-4	0.878	SYNONYMOUS_CODING eIF-3p66 DOWNSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19881398	2R_19881398_SNP [dm3] 2R_23993875_SNP [dm6]	G	A	1.607e^-4	0.878	SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
3R	14973756	3R_14973756_SNP [dm3] 3R_19148034_SNP [dm6]	C	A	1.615e^-4	0.878	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15476371	2R_15476371_SNP [dm3] 2R_19588866_SNP [dm6]	A	T	1.616e^-4	0.878	INTRON sm
3L	5905211	3L_5905211_SNP [dm3] 3L_5912111_SNP [dm6]	C	G	1.622e^-4	0.878	INTRON CG13288
X	9629629	X_9629629_SNP [dm3] X_9735596_SNP [dm6]	G	A	1.633e^-4	0.878	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
2R	15146148	2R_15146148_SNP [dm3] 2R_19258643_SNP [dm6]	T	C	1.647e^-4	0.878	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	4904988	2L_4904988_SNP [dm3] 2L_4904988_SNP [dm6]	G	A	1.652e^-4	0.878	INTRON CG2837
X	14306227	X_14306227_SNP [dm3] X_14412194_SNP [dm6]	C	A	1.653e^-4	0.878	INTRON dpr8
X	18814459	X_18814459_DEL [dm3] X_18920426_DEL [dm6]	AATA	A	1.658e^-4	0.878	INTERGENIC
3L	593004	3L_593004_MNP [dm3] 3L_593004_MNP [dm6]	AAT	TCA	1.662e^-4	0.878	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4029221	2L_4029221_SNP [dm3] 2L_4029221_SNP [dm6]	A	T	1.663e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3386176	X_3386176_SNP [dm3] X_3492143_SNP [dm6]	T	C	1.674e^-4	0.878	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8870325	2R_8870325_SNP [dm3] 2R_12982820_SNP [dm6]	G	T	1.682e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24212766	3R_24212766_SNP [dm3] 3R_28387044_SNP [dm6]	C	A	1.690e^-4	0.878	INTERGENIC
X	2514292	X_2514292_SNP [dm3] X_2620259_SNP [dm6]	C	A	1.701e^-4	0.878	UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4077567	2L_4077567_SNP [dm3] 2L_4077567_SNP [dm6]	A	C	1.712e^-4	0.878	INTRON ed
2R	10834181	2R_10834181_SNP [dm3] 2R_14946676_SNP [dm6]	A	G	1.732e^-4	0.878	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10733061	3L_10733061_SNP [dm3] 3L_10739961_SNP [dm6]	G	A	1.737e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	21203843	X_21203843_SNP [dm3] X_21332816_SNP [dm6]	G	A	1.742e^-4	0.878	DOWNSTREAM tty INTRON tty
3R	11160827	3R_11160827_SNP [dm3] 3R_15335105_SNP [dm6]	T	C	1.748e^-4	0.878	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
X	7988911	X_7988911_SNP [dm3] X_8094878_SNP [dm6]	A	G	1.751e^-4	0.878	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H
3L	17283734	3L_17283734_SNP [dm3] 3L_17290634_SNP [dm6]	A	C	1.752e^-4	0.878	INTERGENIC
X	20406183	X_20406183_SNP [dm3] X_20535156_SNP [dm6]	T	G	1.753e^-4	0.878	INTERGENIC
3R	14973747	3R_14973747_SNP [dm3] 3R_19148025_SNP [dm6]	A	G	1.753e^-4	0.878	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6515749	2L_6515749_SNP [dm3] 2L_6515749_SNP [dm6]	A	T	1.753e^-4	0.878	INTRON CG31637
3L	6699741	3L_6699741_SNP [dm3] 3L_6706641_SNP [dm6]	T	A	1.754e^-4	0.878	UPSTREAM CG8519 INTRON CG8519
3R	14173543	3R_14173543_SNP [dm3] 3R_18347821_SNP [dm6]	T	A	1.760e^-4	0.878	INTRON CG15803
3R	14470772	3R_14470772_SNP [dm3] 3R_18645050_SNP [dm6]	A	G	1.764e^-4	0.878	NON_SYNONYMOUS_CODING qin
2L	13982367	2L_13982367_SNP [dm3] 2L_13982367_SNP [dm6]	A	T	1.767e^-4	0.878	NON_SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20283506	3L_20283506_SNP [dm3] 3L_20290406_SNP [dm6]	G	A	1.789e^-4	0.878	DOWNSTREAM CR43890 INTRON gogo
3R	25877720	3R_25877720_SNP [dm3] 3R_30051998_SNP [dm6]	A	G	1.790e^-4	0.878	UTR_5_PRIME CG15528 UPSTREAM CG7946 EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9185646	3R_9185646_SNP [dm3] 3R_13359924_SNP [dm6]	G	A	1.801e^-4	0.878	INTERGENIC
X	2687225	X_2687225_DEL [dm3] X_2793192_DEL [dm6]	AAGTACCC	A	1.812e^-4	0.878	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1946866	3R_1946866_SNP [dm3] 3R_6121144_SNP [dm6]	G	T	1.821e^-4	0.878	INTERGENIC
2L	15523412	2L_15523412_SNP [dm3] 2L_15523412_SNP [dm6]	C	A	1.826e^-4	0.878	INTRON CR43761 EXON CR43761
3R	5097747	3R_5097747_SNP [dm3] 3R_9272025_SNP [dm6]	C	T	1.833e^-4	0.878	INTERGENIC
3R	16195812	3R_16195812_SNP [dm3] 3R_20370090_SNP [dm6]	G	A	1.836e^-4	0.878	INTERGENIC
3R	27215016	3R_27215016_SNP [dm3] 3R_31389294_SNP [dm6]	T	A	1.844e^-4	0.878	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16210457	3R_16210457_SNP [dm3] 3R_20384735_SNP [dm6]	G	T	1.844e^-4	0.878	INTRON Gfrl
2L	9990848	2L_9990848_INS [dm3] 2L_9990848_INS [dm6]	T	TT	1.845e^-4	0.878	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	15228599	2R_15228599_SNP [dm3] 2R_19341094_SNP [dm6]	T	A	1.850e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
2R	15228602	2R_15228602_SNP [dm3] 2R_19341097_SNP [dm6]	A	T	1.850e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
X	22098069	X_22098069_SNP [dm3] X_22696233_SNP [dm6]	G	A	1.850e^-4	0.878	INTRON CR44997
3R	8138043	3R_8138043_SNP [dm3] 3R_12312321_SNP [dm6]	C	T	1.854e^-4	0.878	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
2R	14125922	2R_14125922_SNP [dm3] 2R_18238417_SNP [dm6]	G	T	1.855e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14647260	3R_14647260_SNP [dm3] 3R_18821538_SNP [dm6]	T	G	1.863e^-4	0.878	INTRON CG18208
2L	4905518	2L_4905518_SNP [dm3] 2L_4905518_SNP [dm6]	A	G	1.865e^-4	0.878	INTRON CG2837	TF binding site mE1_TFBS_cad
X	19324053	X_19324053_SNP [dm3] X_19430020_SNP [dm6]	T	C	1.871e^-4	0.878	INTRON kek5
2L	9990835	2L_9990835_DEL [dm3] 2L_9990835_DEL [dm6]	AGGTATGA	A	1.879e^-4	0.878	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	9158495	3R_9158495_SNP [dm3] 3R_13332773_SNP [dm6]	G	T	1.883e^-4	0.878	START_GAINED PK2-R2 UTR_5_PRIME PK2-R2
3R	25702392	3R_25702392_SNP [dm3] 3R_29876670_SNP [dm6]	G	T	1.893e^-4	0.878	UPSTREAM CG31038 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	3103431	2L_3103431_SNP [dm3] 2L_3103431_SNP [dm6]	C	G	1.895e^-4	0.878	INTRON toc
2L	3103435	2L_3103435_SNP [dm3] 2L_3103435_SNP [dm6]	T	C	1.895e^-4	0.878	INTRON toc
2R	4890688	2R_4890688_SNP [dm3] 2R_9003183_SNP [dm6]	T	G	1.900e^-4	0.878	INTRON Np	TF binding site mE1_TFBS_inv
3R	11528130	3R_11528130_SNP [dm3] 3R_15702408_SNP [dm6]	C	A	1.902e^-4	0.878	INTERGENIC
3R	18845672	3R_18845672_SNP [dm3] 3R_23019950_SNP [dm6]	C	G	1.905e^-4	0.878	INTERGENIC
3L	7799352	3L_7799352_SNP [dm3] 3L_7806252_SNP [dm6]	C	T	1.906e^-4	0.878	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	1019066	3L_1019066_SNP [dm3] 3L_1019066_SNP [dm6]	C	T	1.912e^-4	0.878	SYNONYMOUS_CODING trio INTRON trio
3R	11160929	3R_11160929_SNP [dm3] 3R_15335207_SNP [dm6]	T	C	1.917e^-4	0.878	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
2R	15064281	2R_15064281_SNP [dm3] 2R_19176776_SNP [dm6]	T	C	1.918e^-4	0.878	INTRON CG10737
2L	1117549	2L_1117549_SNP [dm3] 2L_1117549_SNP [dm6]	C	T	1.919e^-4	0.878	INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3410859	X_3410859_SNP [dm3] X_3516826_SNP [dm6]	A	G	1.919e^-4	0.878	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10314874	3L_10314874_SNP [dm3] 3L_10321774_SNP [dm6]	T	C	1.922e^-4	0.878	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4982560	X_4982560_SNP [dm3] X_5088527_SNP [dm6]	G	A	1.927e^-4	0.878	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6838451	3R_6838451_SNP [dm3] 3R_11012729_SNP [dm6]	C	G	1.935e^-4	0.878	INTRON CG34114
2R	9806628	2R_9806628_SNP [dm3] 2R_13919123_SNP [dm6]	T	G	1.936e^-4	0.878	INTRON shot	TF binding site mE1_TFBS_Trl
X	2514295	X_2514295_SNP [dm3] X_2620262_SNP [dm6]	A	G	1.954e^-4	0.878	START_GAINED Seipin UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11135878	2R_11135878_SNP [dm3] 2R_15248373_SNP [dm6]	G	A	1.960e^-4	0.878	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9689979	X_9689979_SNP [dm3] X_9795946_SNP [dm6]	T	C	1.963e^-4	0.878	INTRON CG32698
3R	14173629	3R_14173629_SNP [dm3] 3R_18347907_SNP [dm6]	A	T	1.974e^-4	0.878	INTRON CG15803
2L	10910626	2L_10910626_SNP [dm3] 2L_10910626_SNP [dm6]	G	A	1.979e^-4	0.878	UTR_5_PRIME CG14069 UPSTREAM CG14069
2L	14282171	2L_14282171_SNP [dm3] 2L_14282171_SNP [dm6]	C	T	1.981e^-4	0.878	INTRON wb
3R	9162911	3R_9162911_SNP [dm3] 3R_13337189_SNP [dm6]	T	A	1.984e^-4	0.878	INTERGENIC
3R	15679221	3R_15679221_SNP [dm3] 3R_19853499_SNP [dm6]	G	T	1.987e^-4	0.878	DOWNSTREAM Ire1 & 1 other INTRON CG4662
X	17621185	X_17621185_SNP [dm3] X_17727152_SNP [dm6]	C	T	1.997e^-4	0.878	INTRON CG42684
2R	15228594	2R_15228594_SNP [dm3] 2R_19341089_SNP [dm6]	A	G	1.997e^-4	0.878	UPSTREAM CG9975 INTRON Rgk1
2L	6448628	2L_6448628_SNP [dm3] 2L_6448628_SNP [dm6]	C	T	2.001e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
2R	10803409	2R_10803409_SNP [dm3] 2R_14915904_SNP [dm6]	G	A	2.004e^-4	0.878	INTRON CG10249
3R	27153539	3R_27153539_SNP [dm3] 3R_31327817_SNP [dm6]	C	A	2.006e^-4	0.878	INTRON CG34347	TF binding site mE1_TFBS_cad
X	4085254	X_4085254_SNP [dm3] X_4191221_SNP [dm6]	G	A	2.006e^-4	0.878	INTRON Fas2	TF binding site BDTNP1_TFBS_twi
2R	6622313	2R_6622313_SNP [dm3] 2R_10734808_SNP [dm6]	C	T	2.012e^-4	0.878	UPSTREAM CG7220 INTRON CG7220
2R	12896910	2R_12896910_INS [dm3] 2R_17009405_INS [dm6]	C	AGGCCG	2.020e^-4	0.878	INTRON Ehbp1	TF binding site mE1_TFBS_cad
3L	3824698	3L_3824698_SNP [dm3] 3L_3824698_SNP [dm6]	T	A	2.026e^-4	0.878	UPSTREAM Rdh INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14270096	3R_14270096_SNP [dm3] 3R_18444374_SNP [dm6]	G	A	2.032e^-4	0.878	INTRON fru
3R	25806143	3R_25806143_SNP [dm3] 3R_29980421_SNP [dm6]	C	T	2.032e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13691364	2R_13691364_SNP [dm3] 2R_17803859_SNP [dm6]	T	A	2.040e^-4	0.878	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	23253202	3R_23253202_SNP [dm3] 3R_27427480_SNP [dm6]	C	T	2.042e^-4	0.878	INTRON side
2L	8859876	2L_8859876_SNP [dm3] 2L_8859876_SNP [dm6]	G	A	2.047e^-4	0.878	INTERGENIC
2L	10873512	2L_10873512_SNP [dm3] 2L_10873512_SNP [dm6]	A	T	2.057e^-4	0.878	INTERGENIC
3L	10733069	3L_10733069_SNP [dm3] 3L_10739969_SNP [dm6]	A	G	2.070e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	9130441	3L_9130441_SNP [dm3] 3L_9137341_SNP [dm6]	T	C	2.071e^-4	0.878	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5293933	2L_5293933_SNP [dm3] 2L_5293933_SNP [dm6]	G	A	2.075e^-4	0.878	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	15523396	2L_15523396_SNP [dm3] 2L_15523396_SNP [dm6]	C	T	2.083e^-4	0.878	INTRON CR43761 EXON CR43761
3R	26283549	3R_26283549_SNP [dm3] 3R_30457827_SNP [dm6]	T	C	2.083e^-4	0.878	INTRON CG2224
3L	12145214	3L_12145214_SNP [dm3] 3L_12152114_SNP [dm6]	A	C	2.085e^-4	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	13464003	3R_13464003_SNP [dm3] 3R_17638281_SNP [dm6]	A	C	2.086e^-4	0.878	UPSTREAM CR45222 INTRON CG43175
2L	4901989	2L_4901989_SNP [dm3] 2L_4901989_SNP [dm6]	C	T	2.089e^-4	0.878	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14169418	2L_14169418_SNP [dm3] 2L_14169418_SNP [dm6]	G	A	2.092e^-4	0.878	INTRON CG43333
X	1938667	X_1938667_SNP [dm3] X_2044634_SNP [dm6]	C	T	2.092e^-4	0.878	UTR_3_PRIME moody UPSTREAM CG4325 INTRON CG4313
3L	1463302	3L_1463302_SNP [dm3] 3L_1463302_SNP [dm6]	A	G	2.092e^-4	0.878	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1369180	3L_1369180_SNP [dm3] 3L_1369180_SNP [dm6]	T	A	2.095e^-4	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6448627	2L_6448627_SNP [dm3] 2L_6448627_SNP [dm6]	T	C	2.102e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
3R	22112796	3R_22112796_SNP [dm3] 3R_26287074_SNP [dm6]	C	T	2.103e^-4	0.878	INTERGENIC
3L	1600477	3L_1600477_SNP [dm3] 3L_1600477_SNP [dm6]	A	G	2.113e^-4	0.878	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
2R	11963454	2R_11963454_SNP [dm3] 2R_16075949_SNP [dm6]	T	C	2.117e^-4	0.878	INTERGENIC
3R	11409459	3R_11409459_SNP [dm3] 3R_15583737_SNP [dm6]	C	G	2.127e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10851954	2L_10851954_SNP [dm3] 2L_10851954_SNP [dm6]	C	T	2.131e^-4	0.878	UPSTREAM CG43129 INTRON CG43129
2L	17660118	2L_17660118_SNP [dm3] 2L_17660118_SNP [dm6]	T	C	2.132e^-4	0.878	INTRON CadN
2R	4923336	2R_4923336_SNP [dm3] 2R_9035831_SNP [dm6]	C	A	2.135e^-4	0.878	INTERGENIC
2R	6831152	2R_6831152_SNP [dm3] 2R_10943647_SNP [dm6]	C	A	2.142e^-4	0.878	INTERGENIC
3L	11440323	3L_11440323_SNP [dm3] 3L_11447223_SNP [dm6]	T	C	2.143e^-4	0.878	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19868620	3R_19868620_SNP [dm3] 3R_24042898_SNP [dm6]	T	C	2.164e^-4	0.878	UTR_3_PRIME spas DOWNSTREAM Rox8 & 1 other
2R	4187209	2R_4187209_SNP [dm3] 2R_8299704_SNP [dm6]	G	T	2.168e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	13632660	2L_13632660_SNP [dm3] 2L_13632660_SNP [dm6]	T	C	2.179e^-4	0.878	DOWNSTREAM CR43410 INTRON kuz
2R	9959561	2R_9959561_SNP [dm3] 2R_14072056_SNP [dm6]	G	A	2.185e^-4	0.878	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	22106474	3L_22106474_SNP [dm3] 3L_22113374_SNP [dm6]	C	G	2.186e^-4	0.878	INTERGENIC
3R	9150159	3R_9150159_SNP [dm3] 3R_13324437_SNP [dm6]	C	T	2.195e^-4	0.878	INTERGENIC
3R	14718673	3R_14718673_SNP [dm3] 3R_18892951_SNP [dm6]	A	C	2.197e^-4	0.878	INTERGENIC
X	16534453	X_16534453_SNP [dm3] X_16640420_SNP [dm6]	T	A	2.199e^-4	0.878	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	7849896	3L_7849896_INS [dm3] 3L_7856796_INS [dm6]	T	TT	2.201e^-4	0.878	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl
2R	11964107	2R_11964107_INS [dm3] 2R_16076602_INS [dm6]	T	TT	2.201e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8349750	X_8349750_SNP [dm3] X_8455717_SNP [dm6]	A	C	2.203e^-4	0.878	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25236268	3R_25236268_SNP [dm3] 3R_29410546_SNP [dm6]	A	G	2.208e^-4	0.878	INTRON Ptp99A
3R	10716947	3R_10716947_SNP [dm3] 3R_14891225_SNP [dm6]	T	G	2.213e^-4	0.878	SYNONYMOUS_CODING CG3731	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25704774	3R_25704774_SNP [dm3] 3R_29879052_SNP [dm6]	G	A	2.218e^-4	0.878	SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10803236	3L_10803236_SNP [dm3] 3L_10810136_SNP [dm6]	G	A	2.225e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13354786	3R_13354786_SNP [dm3] 3R_17529064_SNP [dm6]	T	A	2.231e^-4	0.878	INTERGENIC
X	14307174	X_14307174_SNP [dm3] X_14413141_SNP [dm6]	A	G	2.233e^-4	0.878	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16534395	X_16534395_SNP [dm3] X_16640362_SNP [dm6]	T	C	2.234e^-4	0.878	UTR_5_PRIME SmG UPSTREAM mthl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5507155	X_5507155_DEL [dm3] X_5613122_DEL [dm6]	AG	A	2.236e^-4	0.878	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
3R	24428724	3R_24428724_SNP [dm3] 3R_28603002_SNP [dm6]	G	C	2.236e^-4	0.878	UPSTREAM snoRNA:Psi28S-3305c DOWNSTREAM snoRNA:Psi28S-3405b & 3 others INTRON Hrb98DE	TF binding site mE1_TFBS_sens
2R	18229401	2R_18229401_SNP [dm3] 2R_22341896_SNP [dm6]	A	T	2.246e^-4	0.878	INTRON Liprin-gamma
3L	22126110	3L_22126110_INS [dm3] 3L_22133010_INS [dm6]	A	AATAA	2.258e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7418548	3L_7418548_SNP [dm3] 3L_7425448_SNP [dm6]	A	G	2.276e^-4	0.878	INTRON CG42458
X	3385774	X_3385774_SNP [dm3] X_3491741_SNP [dm6]	A	G	2.278e^-4	0.878	SYNONYMOUS_CODING Gas8 DOWNSTREAM CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7816556	3R_7816556_SNP [dm3] 3R_11990834_SNP [dm6]	G	A	2.279e^-4	0.878	UPSTREAM mfas INTRON mfas
X	18733168	X_18733168_SNP [dm3] X_18839135_SNP [dm6]	T	A	2.289e^-4	0.878	INTRON Pvf1
X	8349716	X_8349716_SNP [dm3] X_8455683_SNP [dm6]	T	A	2.294e^-4	0.878	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19648305	2L_19648305_SNP [dm3] 2L_19648305_SNP [dm6]	G	T	2.298e^-4	0.878	INTRON Lar
2L	2740294	2L_2740294_SNP [dm3] 2L_2740294_SNP [dm6]	C	A	2.300e^-4	0.878	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	4710682	X_4710682_SNP [dm3] X_4816649_SNP [dm6]	G	A	2.302e^-4	0.878	INTERGENIC
3L	3389675	3L_3389675_SNP [dm3] 3L_3389675_SNP [dm6]	C	T	2.306e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11848911	3L_11848911_INS [dm3] 3L_11855811_INS [dm6]	A	AAGTAGTT	2.307e^-4	0.878	INTRON CG44837
2L	9820342	2L_9820342_SNP [dm3] 2L_9820342_SNP [dm6]	T	G	2.314e^-4	0.878	INTRON nAChRalpha6
X	10503400	X_10503400_INS [dm3] X_10609367_INS [dm6]	C	CC	2.320e^-4	0.878	INTRON CG43347
3R	26843676	3R_26843676_SNP [dm3] 3R_31017954_SNP [dm6]	C	A	2.320e^-4	0.878	INTERGENIC
2L	16596189	2L_16596189_SNP [dm3] 2L_16596189_SNP [dm6]	C	G	2.332e^-4	0.878	INTRON CG42389
3L	22192085	3L_22192085_SNP [dm3] 3L_22198985_SNP [dm6]	T	C	2.333e^-4	0.878	INTRON olf413
3R	10695290	3R_10695290_SNP [dm3] 3R_14869568_SNP [dm6]	A	G	2.340e^-4	0.878	INTRON btsz
2R	4077344	2R_4077344_SNP [dm3] 2R_8189839_SNP [dm6]	C	T	2.345e^-4	0.878	INTRON LRP1
2L	3610822	2L_3610822_SNP [dm3] 2L_3610822_SNP [dm6]	C	A	2.347e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	13354766	3R_13354766_SNP [dm3] 3R_17529044_SNP [dm6]	G	A	2.347e^-4	0.878	INTERGENIC
2L	2860293	2L_2860293_SNP [dm3] 2L_2860293_SNP [dm6]	T	A	2.353e^-4	0.878	INTRON CG2991	TF binding site mE1_TFBS_inv
2L	9584906	2L_9584906_SNP [dm3] 2L_9584906_SNP [dm6]	T	G	2.353e^-4	0.878	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	4245803	2R_4245803_SNP [dm3] 2R_8358298_SNP [dm6]	A	G	2.354e^-4	0.878	UPSTREAM CG11635 INTRON pdm3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4487612	2L_4487612_SNP [dm3] 2L_4487612_SNP [dm6]	C	T	2.357e^-4	0.878	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13354741	3R_13354741_SNP [dm3] 3R_17529019_SNP [dm6]	A	C	2.361e^-4	0.878	INTERGENIC
2L	7271486	2L_7271486_SNP [dm3] 2L_7271486_SNP [dm6]	G	A	2.362e^-4	0.878	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	4029200	2L_4029200_SNP [dm3] 2L_4029200_SNP [dm6]	T	A	2.363e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14296312	2R_14296312_SNP [dm3] 2R_18408807_SNP [dm6]	A	G	2.376e^-4	0.878	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other
2L	10865353	2L_10865353_SNP [dm3] 2L_10865353_SNP [dm6]	G	A	2.392e^-4	0.878	UPSTREAM CR43807 INTERGENIC
2L	1303891	2L_1303891_SNP [dm3] 2L_1303891_SNP [dm6]	T	A	2.399e^-4	0.878	INTERGENIC
3R	9183496	3R_9183496_SNP [dm3] 3R_13357774_SNP [dm6]	C	A	2.410e^-4	0.878	INTERGENIC
3R	14993307	3R_14993307_SNP [dm3] 3R_19167585_SNP [dm6]	C	G	2.410e^-4	0.878	INTRON sqz
3R	14993376	3R_14993376_SNP [dm3] 3R_19167654_SNP [dm6]	C	T	2.410e^-4	0.878	INTRON sqz	TF binding site mE1_TFBS_cad
2R	19156374	2R_19156374_SNP [dm3] 2R_23268851_SNP [dm6]	A	T	2.411e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25704302	3R_25704302_SNP [dm3] 3R_29878580_SNP [dm6]	A	G	2.415e^-4	0.878	NON_SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo
2L	8911346	2L_8911346_SNP [dm3] 2L_8911346_SNP [dm6]	G	T	2.415e^-4	0.878	INTRON CG34398
3R	26283541	3R_26283541_SNP [dm3] 3R_30457819_SNP [dm6]	C	G	2.418e^-4	0.878	INTRON CG2224
2L	12512165	2L_12512165_SNP [dm3] 2L_12512165_SNP [dm6]	A	G	2.418e^-4	0.878	INTRON bun
2L	5791111	2L_5791111_SNP [dm3] 2L_5791111_SNP [dm6]	T	C	2.421e^-4	0.878	INTRON CG9171
3R	22999452	3R_22999452_SNP [dm3] 3R_27173730_SNP [dm6]	T	C	2.425e^-4	0.878	NON_SYNONYMOUS_CODING Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	22079329	3R_22079329_SNP [dm3] 3R_26253607_SNP [dm6]	T	C	2.428e^-4	0.878	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	5234439	X_5234439_SNP [dm3] X_5340406_SNP [dm6]	G	A	2.431e^-4	0.878	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7368800	3R_7368800_SNP [dm3] 3R_11543078_SNP [dm6]	G	A	2.432e^-4	0.878	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4474336	2L_4474336_SNP [dm3] 2L_4474336_SNP [dm6]	G	A	2.438e^-4	0.878	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19036123	3R_19036123_SNP [dm3] 3R_23210401_SNP [dm6]	A	T	2.439e^-4	0.878	INTRON cnc	TF binding site mE1_TFBS_Trl
X	5815204	X_5815204_SNP [dm3] X_5921171_SNP [dm6]	C	T	2.444e^-4	0.878	INTRON CG3726
2R	12366169	2R_12366169_SNP [dm3] 2R_16478664_SNP [dm6]	T	G	2.445e^-4	0.878	INTERGENIC
2R	10834197	2R_10834197_SNP [dm3] 2R_14946692_SNP [dm6]	A	T	2.446e^-4	0.878	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19193378	3L_19193378_SNP [dm3] 3L_19200278_SNP [dm6]	C	G	2.448e^-4	0.878	INTRON fz2
3L	8265940	3L_8265940_SNP [dm3] 3L_8272840_SNP [dm6]	G	A	2.450e^-4	0.878	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad
3R	15651715	3R_15651715_SNP [dm3] 3R_19825993_SNP [dm6]	G	A	2.452e^-4	0.878	INTRON bnl
3R	14987110	3R_14987110_SNP [dm3] 3R_19161388_SNP [dm6]	G	T	2.463e^-4	0.878	NON_SYNONYMOUS_CODING CG42359 INTRON CG42358	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	2.469e^-4	0.878	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
2L	11599129	2L_11599129_SNP [dm3] 2L_11599129_SNP [dm6]	T	A	2.472e^-4	0.878	INTRON kek2
3R	16170690	3R_16170690_SNP [dm3] 3R_20344968_SNP [dm6]	G	T	2.493e^-4	0.878	INTERGENIC
3R	13464019	3R_13464019_SNP [dm3] 3R_17638297_SNP [dm6]	A	G	2.503e^-4	0.878	UPSTREAM CR45222 INTRON CG43175
2R	14559474	2R_14559474_DEL [dm3] 2R_18671969_DEL [dm6]	CGCA	T	2.503e^-4	0.878	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1963723	2R_1963723_SNP [dm3] 2R_6076218_SNP [dm6]	G	T	2.506e^-4	0.878	NON_SYNONYMOUS_CODING CG7845 UPSTREAM CG7849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	12251839	2R_12251839_SNP [dm3] 2R_16364334_SNP [dm6]	A	T	2.520e^-4	0.878	UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
3R	19923859	3R_19923859_SNP [dm3] 3R_24098137_SNP [dm6]	C	T	2.529e^-4	0.878	INTRON 4EHP
2L	6448517	2L_6448517_INS [dm3] 2L_6448517_INS [dm6]	C	CA	2.530e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad
2R	8868393	2R_8868393_SNP [dm3] 2R_12980888_SNP [dm6]	C	A	2.532e^-4	0.878	UTR_5_PRIME Psc UPSTREAM Psc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11967637	2L_11967637_SNP [dm3] 2L_11967637_SNP [dm6]	G	T	2.534e^-4	0.878	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	10765764	3L_10765764_SNP [dm3] 3L_10772664_SNP [dm6]	C	A	2.537e^-4	0.878	INTRON CG43245	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10873577	2L_10873577_SNP [dm3] 2L_10873577_SNP [dm6]	T	C	2.538e^-4	0.878	INTERGENIC
3L	13852625	3L_13852625_SNP [dm3] 3L_13859525_SNP [dm6]	G	A	2.543e^-4	0.878	NON_SYNONYMOUS_CODING Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17664033	X_17664033_SNP [dm3] X_17770000_SNP [dm6]	T	A	2.547e^-4	0.878	INTRON unc-4
3R	9095285	3R_9095285_SNP [dm3] 3R_13269563_SNP [dm6]	G	T	2.548e^-4	0.878	NON_SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3R	9149992	3R_9149992_SNP [dm3] 3R_13324270_SNP [dm6]	C	T	2.551e^-4	0.878	INTERGENIC
2L	16614015	2L_16614015_SNP [dm3] 2L_16614015_SNP [dm6]	C	A	2.564e^-4	0.878	INTRON CG42389
X	18470333	X_18470333_SNP [dm3] X_18576300_SNP [dm6]	A	T	2.565e^-4	0.878	INTERGENIC
3R	22302141	3R_22302141_SNP [dm3] 3R_26476419_SNP [dm6]	G	A	2.575e^-4	0.878	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	2.579e^-4	0.878	INTERGENIC
2L	11974644	2L_11974644_SNP [dm3] 2L_11974644_SNP [dm6]	A	T	2.581e^-4	0.878	INTERGENIC
2L	4629865	2L_4629865_SNP [dm3] 2L_4629865_SNP [dm6]	T	C	2.586e^-4	0.878	INTERGENIC
3R	14151915	3R_14151915_SNP [dm3] 3R_18326193_SNP [dm6]	G	A	2.586e^-4	0.878	SYNONYMOUS_CODING CG31235	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26751021	3R_26751021_SNP [dm3] 3R_30925299_SNP [dm6]	A	G	2.587e^-4	0.878	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3L	21959879	3L_21959879_INS [dm3] 3L_21966779_INS [dm6]	A	ATA	2.587e^-4	0.878	INTRON CS-2
3R	26286759	3R_26286759_SNP [dm3] 3R_30461037_SNP [dm6]	T	G	2.593e^-4	0.878	INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26456835	3R_26456835_SNP [dm3] 3R_30631113_SNP [dm6]	C	T	2.596e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6425421	2R_6425421_SNP [dm3] 2R_10537916_SNP [dm6]	C	A	2.598e^-4	0.878	UPSTREAM snoRNA:lola-c & 1 other INTRON lola	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20341345	3L_20341345_SNP [dm3] 3L_20348245_SNP [dm6]	T	A	2.605e^-4	0.878	UPSTREAM eRF1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17978981	3L_17978981_SNP [dm3] 3L_17985881_SNP [dm6]	T	A	2.606e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12362454	2L_12362454_SNP [dm3] 2L_12362454_SNP [dm6]	A	C	2.606e^-4	0.878	INTRON bru-2
3R	15895297	3R_15895297_SNP [dm3] 3R_20069575_SNP [dm6]	T	C	2.607e^-4	0.878	INTERGENIC
3R	10199045	3R_10199045_SNP [dm3] 3R_14373323_SNP [dm6]	A	G	2.610e^-4	0.878	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13816197	3L_13816197_SNP [dm3] 3L_13823097_SNP [dm6]	C	T	2.610e^-4	0.878	INTERGENIC
2L	9642883	2L_9642883_SNP [dm3] 2L_9642883_SNP [dm6]	C	A	2.612e^-4	0.878	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3L	9128320	3L_9128320_SNP [dm3] 3L_9135220_SNP [dm6]	C	G	2.618e^-4	0.878	SYNONYMOUS_CODING Dhpr UPSTREAM bol DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22565509	3R_22565509_SNP [dm3] 3R_26739787_SNP [dm6]	C	A	2.620e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16337473	X_16337473_SNP [dm3] X_16443440_SNP [dm6]	C	A	2.629e^-4	0.878	INTRON rngo	TF binding site mE1_TFBS_cad
2L	902568	2L_902568_SNP [dm3] 2L_902568_SNP [dm6]	A	T	2.631e^-4	0.878	UPSTREAM snRNA:U1:21D INTERGENIC
3L	21772176	3L_21772176_SNP [dm3] 3L_21779076_SNP [dm6]	A	C	2.645e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10091918	3L_10091918_SNP [dm3] 3L_10098818_SNP [dm6]	G	A	2.651e^-4	0.878	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
2L	4487435	2L_4487435_SNP [dm3] 2L_4487435_SNP [dm6]	C	T	2.652e^-4	0.878	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22149112	3L_22149112_DEL [dm3] 3L_22156012_DEL [dm6]	ACTCGGACCTTTTCCAT...	A	2.654e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18213698	3L_18213698_INS [dm3] 3L_18220598_INS [dm6]	GC	TTTATGATTA	2.655e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26882291	3R_26882291_SNP [dm3] 3R_31056569_SNP [dm6]	G	T	2.669e^-4	0.878	NON_SYNONYMOUS_CODING dco
3R	19127242	3R_19127242_SNP [dm3] 3R_23301520_SNP [dm6]	G	A	2.671e^-4	0.878	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1476844	3L_1476844_SNP [dm3] 3L_1476844_SNP [dm6]	C	A	2.706e^-4	0.878	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
3L	4516582	3L_4516582_SNP [dm3] 3L_4516582_SNP [dm6]	G	T	2.709e^-4	0.878	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15140248	2R_15140248_DEL [dm3] 2R_19252743_DEL [dm6]	CCTAAC	C	2.723e^-4	0.878	SPLICE_SITE_REGION CG33453 INTRON CG33453
2L	7271892	2L_7271892_DEL [dm3] 2L_7271892_DEL [dm6]	TATTT	T	2.725e^-4	0.878	INTRON Wnt4
3R	21973466	3R_21973466_SNP [dm3] 3R_26147744_SNP [dm6]	T	G	2.729e^-4	0.878	INTERGENIC
2L	11973200	2L_11973200_SNP [dm3] 2L_11973200_SNP [dm6]	G	A	2.737e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17749376	2R_17749376_SNP [dm3] 2R_21861871_SNP [dm6]	G	A	2.761e^-4	0.878	SYNONYMOUS_CODING CG9294
3L	7407327	3L_7407327_SNP [dm3] 3L_7414227_SNP [dm6]	T	C	2.767e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10630897	3L_10630897_SNP [dm3] 3L_10637797_SNP [dm6]	C	A	2.769e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19823896	2R_19823896_SNP [dm3] 2R_23936373_SNP [dm6]	C	T	2.788e^-4	0.878	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
2R	13004730	2R_13004730_SNP [dm3] 2R_17117225_SNP [dm6]	G	T	2.788e^-4	0.878	INTERGENIC
2L	4749454	2L_4749454_SNP [dm3] 2L_4749454_SNP [dm6]	A	G	2.791e^-4	0.878	INTRON CG15630
3R	22312685	3R_22312685_SNP [dm3] 3R_26486963_SNP [dm6]	G	A	2.802e^-4	0.878	INTRON plum
2L	11974660	2L_11974660_SNP [dm3] 2L_11974660_SNP [dm6]	C	A	2.805e^-4	0.878	INTERGENIC
3L	1369226	3L_1369226_SNP [dm3] 3L_1369226_SNP [dm6]	C	T	2.806e^-4	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7799243	3L_7799243_SNP [dm3] 3L_7806143_SNP [dm6]	T	G	2.819e^-4	0.878	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	25365623	3R_25365623_SNP [dm3] 3R_29539901_SNP [dm6]	G	A	2.820e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14328875	2L_14328875_SNP [dm3] 2L_14328875_SNP [dm6]	A	C	2.835e^-4	0.878	SYNONYMOUS_CODING ms_2_34Fe DOWNSTREAM wb
3L	1408015	3L_1408015_DEL [dm3] 3L_1408015_DEL [dm6]	CAAAGGCCAAAAC...	C	2.838e^-4	0.878	INTRON Ptp61F
2R	6145336	2R_6145336_INS [dm3] 2R_10257831_INS [dm6]	A	ATA	2.840e^-4	0.878	INTRON CG12911	TF binding site mE1_TFBS_cad
X	20723084	X_20723084_SNP [dm3] X_20852057_SNP [dm6]	G	T	2.842e^-4	0.878	INTRON shakB
2L	8311377	2L_8311377_SNP [dm3] 2L_8311377_SNP [dm6]	G	T	2.850e^-4	0.878	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	10164620	3L_10164620_SNP [dm3] 3L_10171520_SNP [dm6]	G	A	2.851e^-4	0.878	INTRON dpr10
2R	11965150	2R_11965150_SNP [dm3] 2R_16077645_SNP [dm6]	C	T	2.851e^-4	0.878	DOWNSTREAM CR43415 INTERGENIC
2R	12366379	2R_12366379_SNP [dm3] 2R_16478874_SNP [dm6]	T	C	2.854e^-4	0.878	INTERGENIC
3L	7743736	3L_7743736_SNP [dm3] 3L_7750636_SNP [dm6]	T	G	2.854e^-4	0.878	DOWNSTREAM CG13685 INTRON CG32373
3L	1599672	3L_1599672_SNP [dm3] 3L_1599672_SNP [dm6]	C	T	2.857e^-4	0.878	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_sens
2L	12362299	2L_12362299_INS [dm3] 2L_12362299_INS [dm6]	A	AAATTCAAA	2.860e^-4	0.878	INTRON bru-2
3R	1869435	3R_1869435_SNP [dm3] 3R_6043713_SNP [dm6]	C	G	2.862e^-4	0.878	INTERGENIC
3R	14469883	3R_14469883_SNP [dm3] 3R_18644161_SNP [dm6]	T	C	2.864e^-4	0.878	INTRON qin
2L	4749581	2L_4749581_SNP [dm3] 2L_4749581_SNP [dm6]	C	A	2.874e^-4	0.878	INTRON CG15630
2L	9990783	2L_9990783_SNP [dm3] 2L_9990783_SNP [dm6]	G	A	2.875e^-4	0.878	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4635878	2L_4635878_SNP [dm3] 2L_4635878_SNP [dm6]	G	A	2.882e^-4	0.878	INTERGENIC
3L	2498085	3L_2498085_SNP [dm3] 3L_2498085_SNP [dm6]	T	C	2.882e^-4	0.878	INTRON CG45186
3R	11160098	3R_11160098_SNP [dm3] 3R_15334376_SNP [dm6]	C	A	2.889e^-4	0.878	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3764703	2L_3764703_SNP [dm3] 2L_3764703_SNP [dm6]	A	C	2.890e^-4	0.878	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10272300	2R_10272300_SNP [dm3] 2R_14384795_SNP [dm6]	A	G	2.892e^-4	0.878	SYNONYMOUS_CODING Dh44-R1
2L	4029201	2L_4029201_SNP [dm3] 2L_4029201_SNP [dm6]	A	T	2.897e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11536384	3L_11536384_SNP [dm3] 3L_11543284_SNP [dm6]	T	C	2.900e^-4	0.878	INTRON Mob2
2L	907603	2L_907603_SNP [dm3] 2L_907603_SNP [dm6]	G	A	2.902e^-4	0.878	INTERGENIC
3L	4735440	3L_4735440_SNP [dm3] 3L_4735440_SNP [dm6]	C	A	2.905e^-4	0.878	INTRON RhoGEF64C
3L	15127260	3L_15127260_SNP [dm3] 3L_15134160_SNP [dm6]	A	C	2.909e^-4	0.878	NON_SYNONYMOUS_CODING CG12316 DOWNSTREAM scaRNA:MeU5-U42	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19324021	X_19324021_SNP [dm3] X_19429988_SNP [dm6]	T	A	2.911e^-4	0.878	INTRON kek5
2R	6672485	2R_6672485_SNP [dm3] 2R_10784980_SNP [dm6]	G	T	2.912e^-4	0.878	DOWNSTREAM CR44300 INTRON CG33144 EXON CR44299
2R	8900263	2R_8900263_SNP [dm3] 2R_13012758_SNP [dm6]	C	T	2.919e^-4	0.878	INTERGENIC
3L	10092006	3L_10092006_SNP [dm3] 3L_10098906_SNP [dm6]	G	A	2.941e^-4	0.878	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	2603703	3L_2603703_SNP [dm3] 3L_2603703_SNP [dm6]	C	G	2.948e^-4	0.878	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10840300	2R_10840300_SNP [dm3] 2R_14952795_SNP [dm6]	T	G	2.950e^-4	0.878	INTRON aPKC
3L	918075	3L_918075_SNP [dm3] 3L_918075_SNP [dm6]	T	C	2.954e^-4	0.878	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13852734	3L_13852734_SNP [dm3] 3L_13859634_SNP [dm6]	G	A	2.962e^-4	0.878	SYNONYMOUS_CODING Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_cad
3R	9136134	3R_9136134_SNP [dm3] 3R_13310412_SNP [dm6]	G	A	2.964e^-4	0.878	NON_SYNONYMOUS_CODING CG32473	TF binding site mE1_TFBS_sens
3R	10901777	3R_10901777_SNP [dm3] 3R_15076055_SNP [dm6]	A	C	2.969e^-4	0.878	INTRON dpr9
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	2.971e^-4	0.878	INTRON unc-4
3L	1602229	3L_1602229_SNP [dm3] 3L_1602229_SNP [dm6]	A	G	2.983e^-4	0.878	UPSTREAM CG33791 & 2 others INTRON CG12104	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2760338	X_2760338_SNP [dm3] X_2866305_SNP [dm6]	G	A	2.989e^-4	0.878	INTRON kirre
X	3763924	X_3763924_SNP [dm3] X_3869891_SNP [dm6]	T	C	2.994e^-4	0.878	INTRON yin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5493158	2L_5493158_SNP [dm3] 2L_5493158_SNP [dm6]	C	A	2.994e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12971242	2R_12971242_SNP [dm3] 2R_17083737_SNP [dm6]	C	T	2.996e^-4	0.878	INTRON CG30460	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10630930	3L_10630930_SNP [dm3] 3L_10637830_SNP [dm6]	A	T	2.996e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18470208	X_18470208_SNP [dm3] X_18576175_SNP [dm6]	A	G	3.001e^-4	0.878	INTERGENIC
X	18470210	X_18470210_SNP [dm3] X_18576177_SNP [dm6]	T	A	3.001e^-4	0.878	INTERGENIC
3L	20337040	3L_20337040_SNP [dm3] 3L_20343940_SNP [dm6]	G	T	3.006e^-4	0.878	NON_SYNONYMOUS_CODING Spn77Bc	TF binding site mE1_TFBS_HSA
3L	10803295	3L_10803295_SNP [dm3] 3L_10810195_SNP [dm6]	T	C	3.008e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11848012	3L_11848012_DEL [dm3] 3L_11854912_DEL [dm6]	CCGAAGGATCAATGGGTTTG...	C	3.013e^-4	0.878	INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11848089	3L_11848089_SNP [dm3] 3L_11854989_SNP [dm6]	A	G	3.013e^-4	0.878	INTRON CG44837	TF binding site mE1_TFBS_cad
3R	23397091	3R_23397091_SNP [dm3] 3R_27571369_SNP [dm6]	T	C	3.014e^-4	0.878	INTRON wdb	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	15142269	2L_15142269_SNP [dm3] 2L_15142269_SNP [dm6]	T	A	3.019e^-4	0.878	INTERGENIC
3L	2856136	3L_2856136_SNP [dm3] 3L_2856136_SNP [dm6]	C	T	3.023e^-4	0.878	INTRON CG43444
2R	10834176	2R_10834176_SNP [dm3] 2R_14946671_SNP [dm6]	G	T	3.024e^-4	0.878	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6845125	2R_6845125_DEL [dm3] 2R_10957620_DEL [dm6]	AA	A	3.028e^-4	0.878	INTERGENIC
X	17664163	X_17664163_SNP [dm3] X_17770130_SNP [dm6]	T	A	3.028e^-4	0.878	INTRON unc-4
3R	19846703	3R_19846703_SNP [dm3] 3R_24020981_SNP [dm6]	C	A	3.031e^-4	0.878	INTRON KrT95D
3L	2498061	3L_2498061_SNP [dm3] 3L_2498061_SNP [dm6]	C	T	3.039e^-4	0.878	INTRON CG45186
3R	21354643	3R_21354643_SNP [dm3] 3R_25528921_SNP [dm6]	C	A	3.041e^-4	0.878	INTRON msi
2L	12362300	2L_12362300_DEL [dm3] 2L_12362300_DEL [dm6]	TTTGCATTTGG...	T	3.046e^-4	0.878	INTRON bru-2
2R	8409606	2R_8409606_SNP [dm3] 2R_12522101_SNP [dm6]	A	T	3.050e^-4	0.878	DOWNSTREAM CG8569 INTRON CG33632
2L	11114988	2L_11114988_SNP [dm3] 2L_11114988_SNP [dm6]	C	T	3.056e^-4	0.878	NON_SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad
3R	14687773	3R_14687773_SNP [dm3] 3R_18862051_SNP [dm6]	G	A	3.058e^-4	0.878	INTERGENIC
3R	22813833	3R_22813833_SNP [dm3] 3R_26988111_SNP [dm6]	C	T	3.060e^-4	0.878	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
3L	10630902	3L_10630902_DEL [dm3] 3L_10637802_DEL [dm6]	AA	G	3.065e^-4	0.878	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16904703	3R_16904703_SNP [dm3] 3R_21078981_SNP [dm6]	G	T	3.066e^-4	0.878	INTRON HHEX
2R	18233084	2R_18233084_SNP [dm3] 2R_22345579_SNP [dm6]	C	G	3.068e^-4	0.878	INTRON Liprin-gamma
3L	7744684	3L_7744684_SNP [dm3] 3L_7751584_SNP [dm6]	A	G	3.070e^-4	0.878	INTRON CG32373
X	16045291	X_16045291_SNP [dm3] X_16151258_SNP [dm6]	T	C	3.072e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19823898	2R_19823898_SNP [dm3] 2R_23936375_SNP [dm6]	A	G	3.073e^-4	0.878	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
3R	14469791	3R_14469791_SNP [dm3] 3R_18644069_SNP [dm6]	A	G	3.078e^-4	0.878	INTRON qin
2R	5971572	2R_5971572_SNP [dm3] 2R_10084067_SNP [dm6]	A	T	3.080e^-4	0.878	UTR_3_PRIME egr
3R	8092833	3R_8092833_SNP [dm3] 3R_12267111_SNP [dm6]	C	A	3.080e^-4	0.878	INTRON svp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17942833	2R_17942833_SNP [dm3] 2R_22055328_SNP [dm6]	T	G	3.081e^-4	0.878	INTERGENIC
3R	8521192	3R_8521192_SNP [dm3] 3R_12695470_SNP [dm6]	C	T	3.083e^-4	0.878	UPSTREAM CG14391 & 1 other INTRON NijC
3L	2251644	3L_2251644_SNP [dm3] 3L_2251644_SNP [dm6]	A	G	3.083e^-4	0.878	SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
3L	10750176	3L_10750176_SNP [dm3] 3L_10757076_SNP [dm6]	T	C	3.084e^-4	0.878	INTERGENIC
3R	22166339	3R_22166339_SNP [dm3] 3R_26340617_SNP [dm6]	T	G	3.086e^-4	0.878	INTRON CG33970
X	7730220	X_7730220_SNP [dm3] X_7836187_SNP [dm6]	G	C	3.091e^-4	0.878	INTRON CG1402
3L	8899536	3L_8899536_SNP [dm3] 3L_8906436_SNP [dm6]	G	A	3.091e^-4	0.878	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
2L	15622566	2L_15622566_SNP [dm3] 2L_15622566_SNP [dm6]	A	G	3.107e^-4	0.878	SYNONYMOUS_CODING Or35a
2L	1301610	2L_1301610_SNP [dm3] 2L_1301610_SNP [dm6]	C	T	3.109e^-4	0.878	INTERGENIC
2L	5294038	2L_5294038_SNP [dm3] 2L_5294038_SNP [dm6]	C	T	3.110e^-4	0.878	INTRON vri	TF binding site BDTNP1_TFBS_dl
2R	4942633	2R_4942633_SNP [dm3] 2R_9055128_SNP [dm6]	G	C	3.112e^-4	0.878	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16337405	X_16337405_SNP [dm3] X_16443372_SNP [dm6]	A	T	3.115e^-4	0.878	INTRON rngo	TF binding site mE1_TFBS_cad
2L	10873535	2L_10873535_DEL [dm3] 2L_10873535_DEL [dm6]	ACCCCAATTCGTT...	A	3.122e^-4	0.878	INTERGENIC
2R	6809537	2R_6809537_SNP [dm3] 2R_10922032_SNP [dm6]	G	A	3.131e^-4	0.878	INTERGENIC
2R	8409721	2R_8409721_SNP [dm3] 2R_12522216_SNP [dm6]	T	A	3.135e^-4	0.878	STOP_LOST CG33632 DOWNSTREAM CG8569
3L	5216964	3L_5216964_SNP [dm3] 3L_5223864_SNP [dm6]	G	T	3.139e^-4	0.878	INTRON shep
2L	17672657	2L_17672657_SNP [dm3] 2L_17672657_SNP [dm6]	A	G	3.142e^-4	0.878	INTRON CadN
X	5224574	X_5224574_SNP [dm3] X_5330541_SNP [dm6]	C	A	3.144e^-4	0.878	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14125923	2R_14125923_SNP [dm3] 2R_18238418_SNP [dm6]	C	T	3.152e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2R	1096853	2R_1096853_SNP [dm3] 2R_5209348_SNP [dm6]	T	C	3.158e^-4	0.878	INTRON Nipped-A
2L	10560881	2L_10560881_SNP [dm3] 2L_10560881_SNP [dm6]	T	G	3.167e^-4	0.878	INTRON Trim9
3R	4411301	3R_4411301_SNP [dm3] 3R_8585579_SNP [dm6]	A	T	3.167e^-4	0.878	INTRON 5-HT2B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3410758	X_3410758_SNP [dm3] X_3516725_SNP [dm6]	T	C	3.172e^-4	0.878	DOWNSTREAM CG13021 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	10827427	2L_10827427_SNP [dm3] 2L_10827427_SNP [dm6]	G	A	3.173e^-4	0.878	UPSTREAM Nos INTRON Nos
2L	10478309	2L_10478309_SNP [dm3] 2L_10478309_SNP [dm6]	C	A	3.179e^-4	0.878	INTRON RluA-2
2R	11558832	2R_11558832_SNP [dm3] 2R_15671327_SNP [dm6]	A	T	3.181e^-4	0.878	INTRON fus
3L	2498081	3L_2498081_SNP [dm3] 3L_2498081_SNP [dm6]	T	A	3.186e^-4	0.878	INTRON CG45186
3L	13165395	3L_13165395_SNP [dm3] 3L_13172295_SNP [dm6]	A	T	3.187e^-4	0.878	INTERGENIC
3R	14470666	3R_14470666_SNP [dm3] 3R_18644944_SNP [dm6]	T	A	3.190e^-4	0.878	INTRON qin
3L	22162310	3L_22162310_SNP [dm3] 3L_22169210_SNP [dm6]	T	A	3.192e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15106176	X_15106176_SNP [dm3] X_15212143_SNP [dm6]	G	T	3.203e^-4	0.878	DOWNSTREAM CG5662 INTERGENIC
3R	14470971	3R_14470971_SNP [dm3] 3R_18645249_SNP [dm6]	G	A	3.206e^-4	0.878	NON_SYNONYMOUS_CODING qin
3L	10091340	3L_10091340_SNP [dm3] 3L_10098240_SNP [dm6]	T	C	3.210e^-4	0.878	UPSTREAM CG42825 INTRON dpr6
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	3.211e^-4	0.878	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
3R	18556029	3R_18556029_SNP [dm3] 3R_22730307_SNP [dm6]	A	C	3.222e^-4	0.878	UTR_3_PRIME CG45049
3L	10762752	3L_10762752_SNP [dm3] 3L_10769652_SNP [dm6]	C	G	3.226e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6832030	2R_6832030_SNP [dm3] 2R_10944525_SNP [dm6]	G	T	3.228e^-4	0.878	INTERGENIC
2R	8862820	2R_8862820_INS [dm3] 2R_12975315_INS [dm6]	A	AGA	3.231e^-4	0.878	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4901952	3R_4901952_SNP [dm3] 3R_9076230_SNP [dm6]	A	T	3.231e^-4	0.878	INTRON pum
3L	12145101	3L_12145101_SNP [dm3] 3L_12152001_SNP [dm6]	T	C	3.232e^-4	0.878	SYNONYMOUS_CODING Nrx-IV INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	17211338	3R_17211338_SNP [dm3] 3R_21385616_SNP [dm6]	G	A	3.233e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	904642	3L_904642_SNP [dm3] 3L_904642_SNP [dm6]	A	G	3.234e^-4	0.878	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16431606	2R_16431606_SNP [dm3] 2R_20544101_SNP [dm6]	G	A	3.236e^-4	0.878	INTERGENIC
3R	20233327	3R_20233327_SNP [dm3] 3R_24407605_SNP [dm6]	G	A	3.237e^-4	0.878	INTRON nAChRalpha1
2R	9089426	2R_9089426_SNP [dm3] 2R_13201921_SNP [dm6]	T	C	3.240e^-4	0.878	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26283938	3R_26283938_SNP [dm3] 3R_30458216_SNP [dm6]	T	C	3.246e^-4	0.878	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10873549	2L_10873549_SNP [dm3] 2L_10873549_SNP [dm6]	T	G	3.254e^-4	0.878	INTERGENIC
2L	10474199	2L_10474199_SNP [dm3] 2L_10474199_SNP [dm6]	C	G	3.256e^-4	0.878	START_GAINED RluA-1 UTR_5_PRIME RluA-1 INTRON RluA-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10474207	2L_10474207_SNP [dm3] 2L_10474207_SNP [dm6]	A	G	3.256e^-4	0.878	UTR_5_PRIME RluA-1 INTRON RluA-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26283554	3R_26283554_SNP [dm3] 3R_30457832_SNP [dm6]	T	C	3.259e^-4	0.878	INTRON CG2224
2R	18233062	2R_18233062_SNP [dm3] 2R_22345557_SNP [dm6]	G	A	3.260e^-4	0.878	INTRON Liprin-gamma
2R	6157175	2R_6157175_SNP [dm3] 2R_10269670_SNP [dm6]	T	A	3.288e^-4	0.878	DOWNSTREAM CG12910 INTRON CAP
2L	6532490	2L_6532490_SNP [dm3] 2L_6532490_SNP [dm6]	G	T	3.289e^-4	0.878	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9642809	2L_9642809_SNP [dm3] 2L_9642809_SNP [dm6]	T	C	3.292e^-4	0.878	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14649488	3R_14649488_SNP [dm3] 3R_18823766_SNP [dm6]	G	T	3.296e^-4	0.878	INTRON CG18208
3L	21858776	3L_21858776_SNP [dm3] 3L_21865676_SNP [dm6]	C	T	3.312e^-4	0.878	INTRON mub
3L	12262931	3L_12262931_SNP [dm3] 3L_12269831_SNP [dm6]	C	A	3.312e^-4	0.878	UTR_3_PRIME Pbgs DOWNSTREAM Pbgs & 1 other
3R	9627895	3R_9627895_SNP [dm3] 3R_13802173_SNP [dm6]	C	T	3.313e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9649822	2L_9649822_SNP [dm3] 2L_9649822_SNP [dm6]	C	T	3.318e^-4	0.878	SYNONYMOUS_CODING Apoltp
2R	5124606	2R_5124606_SNP [dm3] 2R_9237101_SNP [dm6]	A	C	3.329e^-4	0.878	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
2L	17671145	2L_17671145_SNP [dm3] 2L_17671145_SNP [dm6]	T	C	3.329e^-4	0.878	INTRON CadN
2L	2740118	2L_2740118_SNP [dm3] 2L_2740118_SNP [dm6]	T	A	3.329e^-4	0.878	UTR_5_PRIME Hrs UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	1872163	3R_1872163_SNP [dm3] 3R_6046441_SNP [dm6]	T	C	3.330e^-4	0.878	INTERGENIC
2L	6448491	2L_6448491_INS [dm3] 2L_6448491_INS [dm6]	T	TGAAAT	3.333e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15447652	3R_15447652_SNP [dm3] 3R_19621930_SNP [dm6]	A	G	3.344e^-4	0.878	UPSTREAM CG6231 INTRON CG6231
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	3.344e^-4	0.878	INTRON SNF4Agamma
2R	8873309	2R_8873309_SNP [dm3] 2R_12985804_SNP [dm6]	C	A	3.351e^-4	0.878	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11972913	2L_11972913_SNP [dm3] 2L_11972913_SNP [dm6]	G	A	3.353e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	9252105	2R_9252105_SNP [dm3] 2R_13364600_SNP [dm6]	T	A	3.353e^-4	0.878	INTERGENIC
2R	9882864	2R_9882864_SNP [dm3] 2R_13995359_SNP [dm6]	G	A	3.356e^-4	0.878	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2495787	3L_2495787_SNP [dm3] 3L_2495787_SNP [dm6]	T	C	3.357e^-4	0.878	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1941853	X_1941853_SNP [dm3] X_2047820_SNP [dm6]	T	C	3.358e^-4	0.878	INTRON CG4313 & 1 other
3L	22306690	3L_22306690_SNP [dm3] 3L_22313590_SNP [dm6]	G	A	3.359e^-4	0.878	INTRON Ten-m
X	21495542	X_21495542_INS [dm3] X_21624515_INS [dm6]	G	GACG	3.365e^-4	0.878	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	16301890	X_16301890_SNP [dm3] X_16407857_SNP [dm6]	G	A	3.368e^-4	0.878	UPSTREAM CG4301 INTRON CG4301
X	17621639	X_17621639_DEL [dm3] X_17727606_DEL [dm6]	ACATGGATATGGTGGCAAT...	A	3.369e^-4	0.878	INTRON CG42684
X	19794601	X_19794601_SNP [dm3] X_19900568_SNP [dm6]	T	G	3.380e^-4	0.878	INTRON Hers
3L	904627	3L_904627_SNP [dm3] 3L_904627_SNP [dm6]	C	A	3.406e^-4	0.878	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19221578	3L_19221578_SNP [dm3] 3L_19228478_SNP [dm6]	G	C	3.408e^-4	0.878	UPSTREAM CR43893 INTRON fz2
X	16333822	X_16333822_DEL [dm3] X_16439789_DEL [dm6]	GAT	G	3.415e^-4	0.878	INTRON CG9947	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9000031	2L_9000031_SNP [dm3] 2L_9000031_SNP [dm6]	G	C	3.420e^-4	0.878	DOWNSTREAM Try29F INTERGENIC
2R	18236487	2R_18236487_SNP [dm3] 2R_22348982_SNP [dm6]	G	T	3.450e^-4	0.878	DOWNSTREAM CG11298 INTRON Liprin-gamma
3L	18060279	3L_18060279_DEL [dm3] 3L_18067179_DEL [dm6]	ACACTGCA	A	3.452e^-4	0.878	INTERGENIC
2L	9008180	2L_9008180_SNP [dm3] 2L_9008180_SNP [dm6]	C	A	3.453e^-4	0.878	INTERGENIC
3L	9743886	3L_9743886_SNP [dm3] 3L_9750786_SNP [dm6]	A	T	3.459e^-4	0.878	INTRON CG42268
3R	14471038	3R_14471038_SNP [dm3] 3R_18645316_SNP [dm6]	C	T	3.464e^-4	0.878	SYNONYMOUS_CODING qin
3R	16866270	3R_16866270_SNP [dm3] 3R_21040548_SNP [dm6]	C	T	3.465e^-4	0.878	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	3.467e^-4	0.878	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3L	10732762	3L_10732762_SNP [dm3] 3L_10739662_SNP [dm6]	G	A	3.473e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	1949440	3R_1949440_SNP [dm3] 3R_6123718_SNP [dm6]	C	A	3.477e^-4	0.878	UTR_3_PRIME Vha14-2 DOWNSTREAM Vha14-2
3R	11160875	3R_11160875_SNP [dm3] 3R_15335153_SNP [dm6]	T	C	3.499e^-4	0.878	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo
3L	4737252	3L_4737252_SNP [dm3] 3L_4737252_SNP [dm6]	T	C	3.507e^-4	0.878	INTRON RhoGEF64C
3R	13834302	3R_13834302_DEL [dm3] 3R_18008580_DEL [dm6]	AA	T	3.511e^-4	0.878	INTRON cpo
3L	8265958	3L_8265958_SNP [dm3] 3L_8272858_SNP [dm6]	G	A	3.511e^-4	0.878	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad
3L	11168309	3L_11168309_SNP [dm3] 3L_11175209_SNP [dm6]	C	T	3.522e^-4	0.878	INTRON CG14142
2L	3109592	2L_3109592_SNP [dm3] 2L_3109592_SNP [dm6]	A	G	3.530e^-4	0.878	UPSTREAM PpD6 INTRON toc
2L	5293891	2L_5293891_SNP [dm3] 2L_5293891_SNP [dm6]	A	G	3.533e^-4	0.878	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8579289	2R_8579289_SNP [dm3] 2R_12691784_SNP [dm6]	A	T	3.535e^-4	0.878	SPLICE_SITE_REGION CG8768 UPSTREAM Obp49a INTRON CG8768	TF binding site mE1_TFBS_sens
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	3.541e^-4	0.878	INTERGENIC
X	5074965	X_5074965_SNP [dm3] X_5180932_SNP [dm6]	A	G	3.542e^-4	0.878	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	14173555	3R_14173555_SNP [dm3] 3R_18347833_SNP [dm6]	G	A	3.542e^-4	0.878	INTRON CG15803
3R	14173558	3R_14173558_SNP [dm3] 3R_18347836_SNP [dm6]	T	A	3.542e^-4	0.878	INTRON CG15803
X	5445448	X_5445448_DEL [dm3] X_5551415_DEL [dm6]	GAG	G	3.543e^-4	0.878	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	20338572	3L_20338572_SNP [dm3] 3L_20345472_SNP [dm6]	A	G	3.547e^-4	0.878	DOWNSTREAM Rbbp5 EXON CR45385
2R	14461652	2R_14461652_SNP [dm3] 2R_18574147_SNP [dm6]	C	A	3.565e^-4	0.878	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16760762	3R_16760762_INS [dm3] 3R_20935040_INS [dm6]	T	TT	3.566e^-4	0.878	INTRON CG31191
3L	1369169	3L_1369169_SNP [dm3] 3L_1369169_SNP [dm6]	T	A	3.570e^-4	0.878	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10560005	2L_10560005_SNP [dm3] 2L_10560005_SNP [dm6]	G	A	3.576e^-4	0.878	INTRON Trim9
2L	6820740	2L_6820740_DEL [dm3] 2L_6820740_DEL [dm6]	AA	T	3.587e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4293738	3L_4293738_SNP [dm3] 3L_4293738_SNP [dm6]	G	T	3.587e^-4	0.878	DOWNSTREAM dyl & 1 other INTERGENIC
2R	15141371	2R_15141371_SNP [dm3] 2R_19253866_SNP [dm6]	T	G	3.593e^-4	0.878	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	4516590	3L_4516590_SNP [dm3] 3L_4516590_SNP [dm6]	G	A	3.602e^-4	0.878	INTRON Tie	TF binding site mE1_TFBS_inv
X	6705466	X_6705466_SNP [dm3] X_6811433_SNP [dm6]	C	T	3.607e^-4	0.878	INTRON pod1	TF binding site BDTNP1_TFBS_dl
X	6705467	X_6705467_SNP [dm3] X_6811434_SNP [dm6]	C	T	3.607e^-4	0.878	INTRON pod1	TF binding site BDTNP1_TFBS_dl
3R	13451278	3R_13451278_SNP [dm3] 3R_17625556_SNP [dm6]	C	A	3.609e^-4	0.878	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
3R	9179834	3R_9179834_SNP [dm3] 3R_13354112_SNP [dm6]	T	C	3.614e^-4	0.878	NON_SYNONYMOUS_CODING mthl12
2R	17901257	2R_17901257_SNP [dm3] 2R_22013752_SNP [dm6]	A	C	3.615e^-4	0.878	INTRON CG34370
2L	11788041	2L_11788041_SNP [dm3] 2L_11788041_SNP [dm6]	C	T	3.621e^-4	0.878	UPSTREAM CG14931 INTERGENIC
2L	14348984	2L_14348984_SNP [dm3] 2L_14348984_SNP [dm6]	C	T	3.621e^-4	0.878	UPSTREAM CR44850 & 1 other DOWNSTREAM l_2_34Fc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7799455	3L_7799455_SNP [dm3] 3L_7806355_SNP [dm6]	A	T	3.623e^-4	0.878	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18832508	X_18832508_SNP [dm3] X_18938475_SNP [dm6]	A	T	3.638e^-4	0.878	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	1605793	3L_1605793_SNP [dm3] 3L_1605793_SNP [dm6]	G	A	3.653e^-4	0.878	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
2R	19100549	2R_19100549_SNP [dm3] 2R_23213026_SNP [dm6]	C	G	3.659e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6699745	3L_6699745_SNP [dm3] 3L_6706645_SNP [dm6]	G	T	3.659e^-4	0.878	UPSTREAM CG8519 INTRON CG8519
X	19794605	X_19794605_SNP [dm3] X_19900572_SNP [dm6]	A	T	3.673e^-4	0.878	INTRON Hers
2R	14458671	2R_14458671_SNP [dm3] 2R_18571166_SNP [dm6]	G	C	3.678e^-4	0.878	INTRON GEFmeso
X	9931768	X_9931768_SNP [dm3] X_10037735_SNP [dm6]	G	A	3.678e^-4	0.878	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
3L	12718963	3L_12718963_SNP [dm3] 3L_12725863_SNP [dm6]	T	G	3.683e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19324186	X_19324186_SNP [dm3] X_19430153_SNP [dm6]	G	C	3.686e^-4	0.878	INTRON kek5
3L	7799380	3L_7799380_SNP [dm3] 3L_7806280_SNP [dm6]	G	A	3.704e^-4	0.878	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	13099292	3R_13099292_SNP [dm3] 3R_17273570_SNP [dm6]	C	T	3.710e^-4	0.878	INTERGENIC
3L	7799451	3L_7799451_SNP [dm3] 3L_7806351_SNP [dm6]	T	G	3.718e^-4	0.878	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	1982631	X_1982631_SNP [dm3] X_2088598_SNP [dm6]	C	A	3.720e^-4	0.878	UPSTREAM Unc-76 INTRON Unc-76
2R	10036527	2R_10036527_SNP [dm3] 2R_14149022_SNP [dm6]	A	G	3.720e^-4	0.878	SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13918489	3L_13918489_SNP [dm3] 3L_13925389_SNP [dm6]	T	A	3.723e^-4	0.878	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7152925	3L_7152925_SNP [dm3] 3L_7159825_SNP [dm6]	C	T	3.729e^-4	0.878	UTR_3_PRIME Dscam2 DOWNSTREAM CG8620 & 1 other
3R	9385737	3R_9385737_SNP [dm3] 3R_13560015_SNP [dm6]	A	T	3.734e^-4	0.878	INTERGENIC
3R	20261449	3R_20261449_SNP [dm3] 3R_24435727_SNP [dm6]	G	T	3.736e^-4	0.878	INTRON nAChRalpha1
2L	14169380	2L_14169380_SNP [dm3] 2L_14169380_SNP [dm6]	T	C	3.741e^-4	0.878	INTRON CG43333
2L	5648830	2L_5648830_SNP [dm3] 2L_5648830_SNP [dm6]	T	C	3.743e^-4	0.878	INTRON CG31646
3L	17494737	3L_17494737_SNP [dm3] 3L_17501637_SNP [dm6]	A	C	3.743e^-4	0.878	INTRON Oatp74D	TF binding site mE1_TFBS_HSA
3L	956333	3L_956333_SNP [dm3] 3L_956333_SNP [dm6]	A	C	3.744e^-4	0.878	INTRON Glut1
3R	22291785	3R_22291785_SNP [dm3] 3R_26466063_SNP [dm6]	G	T	3.745e^-4	0.878	INTRON CG5455
3L	4724807	3L_4724807_INS [dm3] 3L_4724807_INS [dm6]	A	AA	3.746e^-4	0.878	INTRON RhoGEF64C
2L	6448613	2L_6448613_SNP [dm3] 2L_6448613_SNP [dm6]	C	T	3.748e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_kn
X	11602386	X_11602386_SNP [dm3] X_11708353_SNP [dm6]	T	C	3.753e^-4	0.878	SYNONYMOUS_CODING FucT6
2R	15141424	2R_15141424_SNP [dm3] 2R_19253919_SNP [dm6]	C	T	3.754e^-4	0.878	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	11440275	3L_11440275_SNP [dm3] 3L_11447175_SNP [dm6]	A	G	3.756e^-4	0.878	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14165275	2L_14165275_SNP [dm3] 2L_14165275_SNP [dm6]	C	G	3.765e^-4	0.878	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
3L	16489032	3L_16489032_SNP [dm3] 3L_16495932_SNP [dm6]	T	G	3.770e^-4	0.878	UPSTREAM CG42514 INTRON CG33158 & 2 others
3R	25879021	3R_25879021_SNP [dm3] 3R_30053299_SNP [dm6]	A	T	3.772e^-4	0.878	SYNONYMOUS_CODING CG7946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	20828483	3L_20828483_SNP [dm3] 3L_20835383_SNP [dm6]	C	T	3.775e^-4	0.878	UTR_3_PRIME Pka-R1 UPSTREAM CG3288 DOWNSTREAM Pka-R1 & 1 other
2L	7096307	2L_7096307_SNP [dm3] 2L_7096307_SNP [dm6]	G	A	3.777e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22230741	3L_22230741_SNP [dm3] 3L_22237641_SNP [dm6]	G	A	3.779e^-4	0.878	INTRON olf413
3L	11273574	3L_11273574_DEL [dm3] 3L_11280474_DEL [dm6]	GT	G	3.779e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15142226	2R_15142226_SNP [dm3] 2R_19254721_SNP [dm6]	A	T	3.786e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8313169	2L_8313169_SNP [dm3] 2L_8313169_SNP [dm6]	G	A	3.788e^-4	0.878	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6808895	3R_6808895_SNP [dm3] 3R_10983173_SNP [dm6]	A	G	3.791e^-4	0.878	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22381875	3R_22381875_SNP [dm3] 3R_26556153_SNP [dm6]	A	C	3.793e^-4	0.878	INTRON scrib	TF binding site mE1_TFBS_cnc
3L	10732740	3L_10732740_SNP [dm3] 3L_10739640_SNP [dm6]	C	T	3.796e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10560877	2L_10560877_SNP [dm3] 2L_10560877_SNP [dm6]	A	G	3.797e^-4	0.878	INTRON Trim9
2R	1327502	2R_1327502_SNP [dm3] 2R_5439997_SNP [dm6]	G	T	3.802e^-4	0.878	INTRON laccase2
3R	25238112	3R_25238112_SNP [dm3] 3R_29412390_SNP [dm6]	C	T	3.817e^-4	0.878	INTRON Ptp99A
2R	1102999	2R_1102999_SNP [dm3] 2R_5215494_SNP [dm6]	G	C	3.826e^-4	0.878	INTRON Nipped-A	transposable element FlyBase
2L	4474389	2L_4474389_SNP [dm3] 2L_4474389_SNP [dm6]	T	C	3.827e^-4	0.878	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19020797	2R_19020797_DEL [dm3] 2R_23133274_DEL [dm6]	TTGCAAT	T	3.828e^-4	0.878	INTERGENIC
3R	22114032	3R_22114032_SNP [dm3] 3R_26288310_SNP [dm6]	T	A	3.835e^-4	0.878	INTERGENIC
4	984780	4_984780_SNP [dm3] 4_964154_SNP [dm6]	T	A	3.838e^-4	0.878	INTRON fuss	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5293797	2L_5293797_SNP [dm3] 2L_5293797_SNP [dm6]	A	T	3.845e^-4	0.878	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22558537	3R_22558537_SNP [dm3] 3R_26732815_SNP [dm6]	A	G	3.849e^-4	0.878	INTERGENIC
2R	6788758	2R_6788758_SNP [dm3] 2R_10901253_SNP [dm6]	T	C	3.859e^-4	0.878	INTERGENIC
3R	10716812	3R_10716812_SNP [dm3] 3R_14891090_SNP [dm6]	A	G	3.861e^-4	0.878	SYNONYMOUS_CODING CG3731 UPSTREAM CycC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	1603660	3L_1603660_SNP [dm3] 3L_1603660_SNP [dm6]	A	C	3.863e^-4	0.878	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG12104
2L	6374350	2L_6374350_SNP [dm3] 2L_6374350_SNP [dm6]	G	A	3.864e^-4	0.878	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6805900	3R_6805900_SNP [dm3] 3R_10980178_SNP [dm6]	G	C	3.864e^-4	0.878	INTRON CG34114
3L	7799372	3L_7799372_SNP [dm3] 3L_7806272_SNP [dm6]	T	G	3.869e^-4	0.878	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	12366385	2R_12366385_SNP [dm3] 2R_16478880_SNP [dm6]	C	T	3.870e^-4	0.878	INTERGENIC
3R	27179513	3R_27179513_SNP [dm3] 3R_31353791_SNP [dm6]	A	G	3.870e^-4	0.878	INTRON CG34347
3R	11411933	3R_11411933_SNP [dm3] 3R_15586211_SNP [dm6]	C	A	3.872e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19777812	3R_19777812_SNP [dm3] 3R_23952090_SNP [dm6]	C	G	3.874e^-4	0.878	DOWNSTREAM Aats-glupro INTERGENIC
2L	10061410	2L_10061410_SNP [dm3] 2L_10061410_SNP [dm6]	T	A	3.878e^-4	0.878	INTRON Spn31A
3L	19639470	3L_19639470_SNP [dm3] 3L_19646370_SNP [dm6]	C	A	3.879e^-4	0.878	DOWNSTREAM Oat INTERGENIC	insulator Insulator_Class_II.mE01
3R	1865483	3R_1865483_SNP [dm3] 3R_6039761_SNP [dm6]	T	A	3.892e^-4	0.878	INTERGENIC
2R	17147474	2R_17147474_SNP [dm3] 2R_21259969_SNP [dm6]	G	T	3.896e^-4	0.878	INTRON Rgk3
2R	19032672	2R_19032672_SNP [dm3] 2R_23145149_SNP [dm6]	A	T	3.901e^-4	0.878	DOWNSTREAM Klp59D INTERGENIC
3L	22160538	3L_22160538_DEL [dm3] 3L_22167438_DEL [dm6]	CCCCCTATGTAAATATGCTG...	C	3.906e^-4	0.878	INTRON olf413
2R	11963928	2R_11963928_SNP [dm3] 2R_16076423_SNP [dm6]	C	T	3.906e^-4	0.878	INTERGENIC
X	6629712	X_6629712_SNP [dm3] X_6735679_SNP [dm6]	A	G	3.914e^-4	0.878	INTRON CG3168 EXON CR43461
3R	17576609	3R_17576609_SNP [dm3] 3R_21750887_SNP [dm6]	T	A	3.914e^-4	0.878	SPLICE_SITE_REGION CG31233 INTRON CG31233	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	9526159	3L_9526159_SNP [dm3] 3L_9533059_SNP [dm6]	T	C	3.917e^-4	0.878	INTERGENIC
3R	18554446	3R_18554446_SNP [dm3] 3R_22728724_SNP [dm6]	T	C	3.923e^-4	0.878	INTRON CG45049
3R	10199032	3R_10199032_SNP [dm3] 3R_14373310_SNP [dm6]	T	G	3.925e^-4	0.878	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15515855	2L_15515855_SNP [dm3] 2L_15515855_SNP [dm6]	G	A	3.933e^-4	0.878	EXON CR44864
2L	9726606	2L_9726606_SNP [dm3] 2L_9726606_SNP [dm6]	C	T	3.939e^-4	0.878	INTRON Nckx30C
3R	7893657	3R_7893657_SNP [dm3] 3R_12067935_SNP [dm6]	T	C	3.951e^-4	0.878	DOWNSTREAM CG14741 INTERGENIC
2L	13139191	2L_13139191_SNP [dm3] 2L_13139191_SNP [dm6]	T	C	3.954e^-4	0.878	INTERGENIC
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	3.954e^-4	0.878	INTERGENIC
3R	9039096	3R_9039096_SNP [dm3] 3R_13213374_SNP [dm6]	T	C	3.955e^-4	0.878	INTRON CG8483
3L	8564770	3L_8564770_SNP [dm3] 3L_8571670_SNP [dm6]	T	G	3.962e^-4	0.878	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
2L	5053704	2L_5053704_SNP [dm3] 2L_5053704_SNP [dm6]	G	A	3.964e^-4	0.878	NON_SYNONYMOUS_CODING CG14040 UPSTREAM eIF-3p40 DOWNSTREAM CG14036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20902093	3L_20902093_SNP [dm3] 3L_20908993_SNP [dm6]	T	A	3.964e^-4	0.878	INTERGENIC
2R	10889269	2R_10889269_SNP [dm3] 2R_15001764_SNP [dm6]	T	A	3.965e^-4	0.878	INTERGENIC
3L	1602183	3L_1602183_SNP [dm3] 3L_1602183_SNP [dm6]	T	C	3.966e^-4	0.878	UPSTREAM CG33791 & 2 others INTRON CG12104	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1063786	3L_1063786_SNP [dm3] 3L_1063786_SNP [dm6]	G	A	3.979e^-4	0.878	INTRON bab1
3L	22126095	3L_22126095_SNP [dm3] 3L_22132995_SNP [dm6]	C	A	3.986e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17595331	3L_17595331_SNP [dm3] 3L_17602231_SNP [dm6]	G	A	3.989e^-4	0.878	INTRON Eip74EF
3L	1419485	3L_1419485_SNP [dm3] 3L_1419485_SNP [dm6]	T	A	3.990e^-4	0.878	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	15003212	3R_15003212_SNP [dm3] 3R_19177490_SNP [dm6]	G	A	3.990e^-4	0.878	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	780794	3L_780794_SNP [dm3] 3L_780794_SNP [dm6]	G	C	3.997e^-4	0.878	INTERGENIC
3L	5902388	3L_5902388_SNP [dm3] 3L_5909288_SNP [dm6]	A	G	4.005e^-4	0.878	NON_SYNONYMOUS_CODING CG13288
2R	2445803	2R_2445803_SNP [dm3] 2R_6558298_SNP [dm6]	A	T	4.008e^-4	0.878	INTRON jing	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	4732432	X_4732432_DEL [dm3] X_4838399_DEL [dm6]	ATACC	T	4.014e^-4	0.878	INTERGENIC
X	4732439	X_4732439_SNP [dm3] X_4838406_SNP [dm6]	A	T	4.014e^-4	0.878	INTERGENIC
3R	9176454	3R_9176454_SNP [dm3] 3R_13350732_SNP [dm6]	G	T	4.035e^-4	0.878	INTERGENIC
2L	4820300	2L_4820300_SNP [dm3] 2L_4820300_SNP [dm6]	C	T	4.040e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15263389	X_15263389_SNP [dm3] X_15369356_SNP [dm6]	G	A	4.044e^-4	0.878	INTRON acj6
2R	12604445	2R_12604445_SNP [dm3] 2R_16716940_SNP [dm6]	C	T	4.058e^-4	0.878	INTRON CG30463
X	1935737	X_1935737_SNP [dm3] X_2041704_SNP [dm6]	A	G	4.058e^-4	0.878	UPSTREAM CG4313 & 1 other INTRON Actn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	21465912	X_21465912_INS [dm3] X_21594885_INS [dm6]	A	ACATA	4.072e^-4	0.878	INTERGENIC
3L	18213690	3L_18213690_INS [dm3] 3L_18220590_INS [dm6]	A	ACTT	4.081e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	6448599	2L_6448599_SNP [dm3] 2L_6448599_SNP [dm6]	A	C	4.081e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad
2L	4629677	2L_4629677_SNP [dm3] 2L_4629677_SNP [dm6]	A	G	4.085e^-4	0.878	INTERGENIC
3L	822649	3L_822649_SNP [dm3] 3L_822649_SNP [dm6]	A	G	4.088e^-4	0.878	INTERGENIC
3R	10076594	3R_10076594_SNP [dm3] 3R_14250872_SNP [dm6]	A	T	4.094e^-4	0.878	DOWNSTREAM Aats-met INTERGENIC
3L	1019564	3L_1019564_SNP [dm3] 3L_1019564_SNP [dm6]	T	C	4.095e^-4	0.878	INTRON trio	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25163956	3R_25163956_SNP [dm3] 3R_29338234_SNP [dm6]	G	A	4.098e^-4	0.878	INTERGENIC
2R	8163295	2R_8163295_SNP [dm3] 2R_12275790_SNP [dm6]	A	T	4.102e^-4	0.878	UTR_3_PRIME Cam
3L	11273584	3L_11273584_SNP [dm3] 3L_11280484_SNP [dm6]	G	C	4.122e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17840763	3L_17840763_SNP [dm3] 3L_17847663_SNP [dm6]	C	T	4.125e^-4	0.878	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9163024	3R_9163024_SNP [dm3] 3R_13337302_SNP [dm6]	A	T	4.133e^-4	0.878	INTERGENIC
3R	17210038	3R_17210038_SNP [dm3] 3R_21384316_SNP [dm6]	G	T	4.138e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs
X	9629627	X_9629627_SNP [dm3] X_9735594_SNP [dm6]	T	C	4.140e^-4	0.878	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
3R	18541908	3R_18541908_SNP [dm3] 3R_22716186_SNP [dm6]	A	C	4.148e^-4	0.878	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10503487	X_10503487_SNP [dm3] X_10609454_SNP [dm6]	G	A	4.151e^-4	0.878	INTRON CG43347
3L	22174789	3L_22174789_SNP [dm3] 3L_22181689_SNP [dm6]	C	G	4.154e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6575987	2L_6575987_SNP [dm3] 2L_6575987_SNP [dm6]	G	A	4.158e^-4	0.878	INTRON CG11319
2L	3124677	2L_3124677_SNP [dm3] 2L_3124677_SNP [dm6]	G	C	4.160e^-4	0.878	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	3383913	X_3383913_INS [dm3] X_3489880_INS [dm6]	T	TAACCTCT	4.166e^-4	0.878	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18820775	3R_18820775_SNP [dm3] 3R_22995053_SNP [dm6]	G	A	4.171e^-4	0.878	INTRON Nha2
2L	6448534	2L_6448534_SNP [dm3] 2L_6448534_SNP [dm6]	C	T	4.174e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad
3L	9342999	3L_9342999_SNP [dm3] 3L_9349899_SNP [dm6]	T	A	4.193e^-4	0.878	NON_SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
3L	9130329	3L_9130329_SNP [dm3] 3L_9137229_SNP [dm6]	T	C	4.194e^-4	0.878	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10873515	2L_10873515_SNP [dm3] 2L_10873515_SNP [dm6]	A	T	4.203e^-4	0.878	INTERGENIC
3L	593002	3L_593002_SNP [dm3] 3L_593002_SNP [dm6]	A	C	4.208e^-4	0.878	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10732694	3L_10732694_SNP [dm3] 3L_10739594_SNP [dm6]	A	G	4.209e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	901850	2L_901850_SNP [dm3] 2L_901850_SNP [dm6]	A	G	4.211e^-4	0.878	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9196073	X_9196073_SNP [dm3] X_9302040_SNP [dm6]	C	T	4.218e^-4	0.878	SYNONYMOUS_CODING lz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	17978994	3L_17978994_DEL [dm3] 3L_17985894_DEL [dm6]	TAT	CC	4.220e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12362415	2L_12362415_SNP [dm3] 2L_12362415_SNP [dm6]	A	T	4.225e^-4	0.878	INTRON bru-2
3R	25463460	3R_25463460_SNP [dm3] 3R_29637738_SNP [dm6]	G	A	4.232e^-4	0.878	INTRON Dop1R2
2L	943745	2L_943745_SNP [dm3] 2L_943745_SNP [dm6]	A	T	4.234e^-4	0.878	INTRON CG4341
3R	19310439	3R_19310439_SNP [dm3] 3R_23484717_SNP [dm6]	C	T	4.238e^-4	0.878	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26283576	3R_26283576_SNP [dm3] 3R_30457854_SNP [dm6]	A	G	4.241e^-4	0.878	INTRON CG2224
2L	11483578	2L_11483578_SNP [dm3] 2L_11483578_SNP [dm6]	C	T	4.246e^-4	0.878	INTERGENIC
2L	15515759	2L_15515759_SNP [dm3] 2L_15515759_SNP [dm6]	C	T	4.252e^-4	0.878	DOWNSTREAM CR44864 INTERGENIC
3R	9128410	3R_9128410_SNP [dm3] 3R_13302688_SNP [dm6]	T	A	4.264e^-4	0.878	UTR_5_PRIME CG32473 UPSTREAM CG43208 DOWNSTREAM CG8774
3R	9129522	3R_9129522_SNP [dm3] 3R_13303800_SNP [dm6]	T	C	4.264e^-4	0.878	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
X	20683558	X_20683558_SNP [dm3] X_20812531_SNP [dm6]	C	T	4.271e^-4	0.878	INTRON shakB
3L	825692	3L_825692_SNP [dm3] 3L_825692_SNP [dm6]	C	A	4.288e^-4	0.878	INTERGENIC
X	4831334	X_4831334_SNP [dm3] X_4937301_SNP [dm6]	G	A	4.319e^-4	0.878	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14471170	3R_14471170_SNP [dm3] 3R_18645448_SNP [dm6]	G	A	4.323e^-4	0.878	SYNONYMOUS_CODING qin
2L	1410940	2L_1410940_SNP [dm3] 2L_1410940_SNP [dm6]	C	T	4.324e^-4	0.878	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	5526281	2L_5526281_SNP [dm3] 2L_5526281_SNP [dm6]	C	T	4.325e^-4	0.878	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22210914	3L_22210914_SNP [dm3] 3L_22217814_SNP [dm6]	C	A	4.329e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22216007	3L_22216007_SNP [dm3] 3L_22222907_SNP [dm6]	T	C	4.329e^-4	0.878	INTRON olf413
3L	17040223	3L_17040223_SNP [dm3] 3L_17047123_SNP [dm6]	A	G	4.330e^-4	0.878	INTRON TpnC73F
3R	12964901	3R_12964901_SNP [dm3] 3R_17139179_SNP [dm6]	A	T	4.338e^-4	0.878	NON_SYNONYMOUS_CODING CG5265 DOWNSTREAM CG5255
3L	2268696	3L_2268696_SNP [dm3] 3L_2268696_SNP [dm6]	T	A	4.339e^-4	0.878	UPSTREAM CG32302 DOWNSTREAM obst-I INTERGENIC
3R	6840959	3R_6840959_SNP [dm3] 3R_11015237_SNP [dm6]	C	A	4.340e^-4	0.878	INTRON CG34114
3L	5704258	3L_5704258_SNP [dm3] 3L_5711158_SNP [dm6]	T	C	4.344e^-4	0.878	INTRON sif
3R	27135131	3R_27135131_SNP [dm3] 3R_31309409_SNP [dm6]	C	A	4.348e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9153424	3R_9153424_SNP [dm3] 3R_13327702_SNP [dm6]	C	T	4.349e^-4	0.878	INTERGENIC
3L	2609564	3L_2609564_SNP [dm3] 3L_2609564_SNP [dm6]	G	T	4.351e^-4	0.878	DOWNSTREAM Pxn INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9146995	2R_9146995_SNP [dm3] 2R_13259490_SNP [dm6]	G	T	4.364e^-4	0.878	UPSTREAM CG42319 INTERGENIC
3R	25515841	3R_25515841_SNP [dm3] 3R_29690119_SNP [dm6]	A	T	4.368e^-4	0.878	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16335778	X_16335778_INS [dm3] X_16441745_INS [dm6]	A	AACACA	4.368e^-4	0.878	UTR_5_PRIME rngo UPSTREAM CG9947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	17501843	3L_17501843_SNP [dm3] 3L_17508743_SNP [dm6]	C	G	4.377e^-4	0.878	NON_SYNONYMOUS_CODING Oatp74D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15515897	2L_15515897_SNP [dm3] 2L_15515897_SNP [dm6]	A	G	4.377e^-4	0.878	EXON CR44864
3L	8149998	3L_8149998_SNP [dm3] 3L_8156898_SNP [dm6]	C	T	4.380e^-4	0.878	INTRON CG42445
3R	9135713	3R_9135713_INS [dm3] 3R_13309991_INS [dm6]	C	CATGCTTC	4.381e^-4	0.878	INTRON CG32473
3R	15651797	3R_15651797_SNP [dm3] 3R_19826075_SNP [dm6]	T	A	4.382e^-4	0.878	INTRON bnl
3L	20338372	3L_20338372_SNP [dm3] 3L_20345272_SNP [dm6]	C	A	4.392e^-4	0.878	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
2L	15515854	2L_15515854_SNP [dm3] 2L_15515854_SNP [dm6]	T	A	4.398e^-4	0.878	EXON CR44864
2R	15703742	2R_15703742_SNP [dm3] 2R_19816237_SNP [dm6]	C	T	4.401e^-4	0.878	DOWNSTREAM Obp56h INTERGENIC
2R	7823341	2R_7823341_SNP [dm3] 2R_11935836_SNP [dm6]	T	A	4.402e^-4	0.878	INTERGENIC
2L	13545148	2L_13545148_DEL [dm3] 2L_13545148_DEL [dm6]	TT	T	4.414e^-4	0.878	INTRON B4
2R	16185803	2R_16185803_SNP [dm3] 2R_20298298_SNP [dm6]	C	T	4.420e^-4	0.878	INTERGENIC
2L	19733563	2L_19733563_DEL [dm3] 2L_19733563_DEL [dm6]	GCAGCATTTGCTG...	G	4.423e^-4	0.878	CODON_DELETION CG10462	TF binding site mE1_TFBS_sens
2R	15143415	2R_15143415_SNP [dm3] 2R_19255910_SNP [dm6]	T	C	4.430e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11974619	2L_11974619_SNP [dm3] 2L_11974619_SNP [dm6]	T	A	4.430e^-4	0.878	INTERGENIC
2R	15430114	2R_15430114_SNP [dm3] 2R_19542609_SNP [dm6]	C	T	4.430e^-4	0.878	INTRON sm	TF binding site mE1_TFBS_inv
3R	26494771	3R_26494771_INS [dm3] 3R_30669049_INS [dm6]	A	ATA	4.447e^-4	0.878	INTERGENIC
2L	6820896	2L_6820896_SNP [dm3] 2L_6820896_SNP [dm6]	A	G	4.457e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8801588	2L_8801588_SNP [dm3] 2L_8801588_SNP [dm6]	C	A	4.457e^-4	0.878	INTERGENIC
3R	15447638	3R_15447638_SNP [dm3] 3R_19621916_SNP [dm6]	C	G	4.459e^-4	0.878	UPSTREAM CG6231 INTRON CG6231
3R	23130947	3R_23130947_SNP [dm3] 3R_27305225_SNP [dm6]	A	T	4.460e^-4	0.878	INTRON CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5648458	2L_5648458_INS [dm3] 2L_5648458_INS [dm6]	A	ATA	4.466e^-4	0.878	INTRON CG31646
2R	7050438	2R_7050438_SNP [dm3] 2R_11162933_SNP [dm6]	G	T	4.470e^-4	0.878	INTRON shn & 1 other
3L	2720598	3L_2720598_SNP [dm3] 3L_2720598_SNP [dm6]	G	T	4.484e^-4	0.878	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6460817	2L_6460817_SNP [dm3] 2L_6460817_SNP [dm6]	C	A	4.486e^-4	0.878	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2355715	3L_2355715_SNP [dm3] 3L_2355715_SNP [dm6]	A	C	4.487e^-4	0.878	INTERGENIC
3R	9088403	3R_9088403_SNP [dm3] 3R_13262681_SNP [dm6]	A	C	4.497e^-4	0.878	DOWNSTREAM Ravus & 1 other INTERGENIC
3R	14687801	3R_14687801_SNP [dm3] 3R_18862079_SNP [dm6]	G	A	4.499e^-4	0.878	INTERGENIC
3R	15185181	3R_15185181_SNP [dm3] 3R_19359459_SNP [dm6]	C	T	4.499e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	18988907	3R_18988907_SNP [dm3] 3R_23163185_SNP [dm6]	G	A	4.500e^-4	0.878	INTERGENIC
2L	1300832	2L_1300832_SNP [dm3] 2L_1300832_SNP [dm6]	C	A	4.512e^-4	0.878	INTERGENIC
2L	5482165	2L_5482165_SNP [dm3] 2L_5482165_SNP [dm6]	T	C	4.520e^-4	0.878	INTERGENIC
2R	6157314	2R_6157314_SNP [dm3] 2R_10269809_SNP [dm6]	C	G	4.523e^-4	0.878	DOWNSTREAM CG12910 INTRON CAP
3R	26499678	3R_26499678_SNP [dm3] 3R_30673956_SNP [dm6]	G	A	4.531e^-4	0.878	INTERGENIC
2R	1094256	2R_1094256_SNP [dm3] 2R_5206751_SNP [dm6]	G	T	4.535e^-4	0.878	INTRON Nipped-A	transposable element FlyBase
X	14700961	X_14700961_SNP [dm3] X_14806928_SNP [dm6]	A	C	4.538e^-4	0.878	INTRON rut
3R	15037901	3R_15037901_SNP [dm3] 3R_19212179_SNP [dm6]	A	G	4.553e^-4	0.878	UTR_5_PRIME cry	TF binding site BDTNP1_TFBS_dl
2L	10865479	2L_10865479_DEL [dm3] 2L_10865479_DEL [dm6]	TACATGT	T	4.558e^-4	0.878	UPSTREAM CR43807 INTERGENIC
X	21209537	X_21209537_SNP [dm3] X_21338510_SNP [dm6]	C	T	4.560e^-4	0.878	UTR_5_PRIME tty INTRON tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9133435	X_9133435_SNP [dm3] X_9239402_SNP [dm6]	A	T	4.561e^-4	0.878	NON_SYNONYMOUS_CODING mxc
2R	17938400	2R_17938400_SNP [dm3] 2R_22050895_SNP [dm6]	C	T	4.564e^-4	0.878	INTERGENIC
2R	6735339	2R_6735339_SNP [dm3] 2R_10847834_SNP [dm6]	G	A	4.565e^-4	0.878	INTRON CG30015
3L	20342421	3L_20342421_INS [dm3] 3L_20349321_INS [dm6]	G	GG	4.570e^-4	0.878	INTRON eRF1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	19007361	2R_19007361_SNP [dm3] 2R_23119838_SNP [dm6]	A	T	4.571e^-4	0.878	INTERGENIC
2L	4735443	2L_4735443_SNP [dm3] 2L_4735443_SNP [dm6]	G	A	4.582e^-4	0.878	UTR_3_PRIME CG15630 UPSTREAM CG15631
X	21919498	X_21919498_SNP [dm3] X_22517662_SNP [dm6]	T	A	4.585e^-4	0.878	INTRON CG17600
X	14417916	X_14417916_SNP [dm3] X_14523883_SNP [dm6]	T	C	4.587e^-4	0.878	INTERGENIC
2L	6448620	2L_6448620_SNP [dm3] 2L_6448620_SNP [dm6]	A	T	4.588e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_kn
2L	9009908	2L_9009908_SNP [dm3] 2L_9009908_SNP [dm6]	C	A	4.593e^-4	0.878	UPSTREAM CG9568 INTERGENIC
3L	12145135	3L_12145135_SNP [dm3] 3L_12152035_SNP [dm6]	G	C	4.594e^-4	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	2603712	3L_2603712_SNP [dm3] 3L_2603712_SNP [dm6]	C	T	4.599e^-4	0.878	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21784268	2L_21784268_SNP [dm3] 2L_21784268_SNP [dm6]	C	T	4.604e^-4	0.878	UPSTREAM CG11630 INTRON CG31612
2L	4029188	2L_4029188_INS [dm3] 2L_4029188_INS [dm6]	A	AAATGTA	4.607e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18812834	3R_18812834_SNP [dm3] 3R_22987112_SNP [dm6]	G	A	4.611e^-4	0.878	UPSTREAM Or94a INTRON Nha2	TF binding site mE1_TFBS_cad
X	10503478	X_10503478_SNP [dm3] X_10609445_SNP [dm6]	A	G	4.616e^-4	0.878	INTRON CG43347
2L	6529690	2L_6529690_SNP [dm3] 2L_6529690_SNP [dm6]	T	C	4.619e^-4	0.878	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14469904	3R_14469904_SNP [dm3] 3R_18644182_SNP [dm6]	C	T	4.621e^-4	0.878	INTRON qin
X	21466623	X_21466623_SNP [dm3] X_21595596_SNP [dm6]	G	T	4.630e^-4	0.878	INTERGENIC
X	8831990	X_8831990_SNP [dm3] X_8937957_SNP [dm6]	C	A	4.638e^-4	0.878	INTRON rdgA
3L	20340641	3L_20340641_SNP [dm3] 3L_20347541_SNP [dm6]	C	A	4.643e^-4	0.878	SYNONYMOUS_CODING Rbbp5 UPSTREAM eRF1	TF binding site BDTNP1_TFBS_Med
3R	11444395	3R_11444395_SNP [dm3] 3R_15618673_SNP [dm6]	C	T	4.645e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	22203321	3L_22203321_SNP [dm3] 3L_22210221_SNP [dm6]	A	C	4.651e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17228168	X_17228168_SNP [dm3] X_17334135_SNP [dm6]	C	T	4.658e^-4	0.878	INTERGENIC
3L	17978943	3L_17978943_SNP [dm3] 3L_17985843_SNP [dm6]	A	T	4.659e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26495557	3R_26495557_SNP [dm3] 3R_30669835_SNP [dm6]	C	T	4.665e^-4	0.878	INTERGENIC
2L	7096318	2L_7096318_DEL [dm3] 2L_7096318_DEL [dm6]	TT	T	4.667e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9091662	2R_9091662_SNP [dm3] 2R_13204157_SNP [dm6]	G	T	4.692e^-4	0.878	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315	TF binding site mE1_TFBS_cad
3R	1868322	3R_1868322_SNP [dm3] 3R_6042600_SNP [dm6]	G	A	4.695e^-4	0.878	INTERGENIC
2R	10840313	2R_10840313_SNP [dm3] 2R_14952808_SNP [dm6]	T	G	4.702e^-4	0.878	INTRON aPKC
3R	26372293	3R_26372293_SNP [dm3] 3R_30546571_SNP [dm6]	C	T	4.704e^-4	0.878	START_GAINED tmod UTR_5_PRIME tmod UPSTREAM tmod INTRON tmod
3L	15666857	3L_15666857_SNP [dm3] 3L_15673757_SNP [dm6]	C	T	4.705e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
X	9591253	X_9591253_INS [dm3] X_9697220_INS [dm6]	A	AA	4.710e^-4	0.878	UTR_3_PRIME btd
2L	10474515	2L_10474515_SNP [dm3] 2L_10474515_SNP [dm6]	G	C	4.717e^-4	0.878	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10475844	2L_10475844_INS [dm3] 2L_10475844_INS [dm6]	A	AA	4.720e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24422316	3R_24422316_SNP [dm3] 3R_28596594_SNP [dm6]	T	C	4.731e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26095969	3R_26095969_SNP [dm3] 3R_30270247_SNP [dm6]	A	C	4.733e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6531570	2L_6531570_SNP [dm3] 2L_6531570_SNP [dm6]	G	A	4.733e^-4	0.878	INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	5777540	2R_5777540_SNP [dm3] 2R_9890035_SNP [dm6]	T	C	4.749e^-4	0.878	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
X	21465783	X_21465783_SNP [dm3] X_21594756_SNP [dm6]	G	C	4.751e^-4	0.878	INTERGENIC
2R	8322734	2R_8322734_SNP [dm3] 2R_12435229_SNP [dm6]	G	C	4.757e^-4	0.878	NON_SYNONYMOUS_CODING DUBAI UPSTREAM CG30051	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8216084	3L_8216084_SNP [dm3] 3L_8222984_SNP [dm6]	T	A	4.759e^-4	0.878	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5649024	2L_5649024_SNP [dm3] 2L_5649024_SNP [dm6]	A	G	4.760e^-4	0.878	INTRON CG31646
2R	6180151	2R_6180151_SNP [dm3] 2R_10292646_SNP [dm6]	C	T	4.764e^-4	0.878	SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16335256	X_16335256_SNP [dm3] X_16441223_SNP [dm6]	G	A	4.771e^-4	0.878	UTR_5_PRIME CG9947 UPSTREAM rngo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1099793	2R_1099793_INS [dm3] 2R_5212288_INS [dm6]	T	TT	4.774e^-4	0.878	INTRON Nipped-A
2R	9411256	2R_9411256_SNP [dm3] 2R_13523751_SNP [dm6]	T	A	4.775e^-4	0.878	DOWNSTREAM CG13331 INTRON Vmat
3L	12145168	3L_12145168_SNP [dm3] 3L_12152068_SNP [dm6]	C	T	4.787e^-4	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	22722055	3R_22722055_SNP [dm3] 3R_26896333_SNP [dm6]	T	A	4.795e^-4	0.878	INTRON T48	regulatory region REDfly_CRMs
3L	8272717	3L_8272717_SNP [dm3] 3L_8279617_SNP [dm6]	G	A	4.795e^-4	0.878	SYNONYMOUS_CODING Dscam4
2R	1098960	2R_1098960_SNP [dm3] 2R_5211455_SNP [dm6]	G	C	4.798e^-4	0.878	INTRON Nipped-A	transposable element FlyBase
X	15533945	X_15533945_SNP [dm3] X_15639912_SNP [dm6]	C	T	4.800e^-4	0.878	INTERGENIC
X	9928821	X_9928821_SNP [dm3] X_10034788_SNP [dm6]	A	C	4.801e^-4	0.878	SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	8974575	2L_8974575_SNP [dm3] 2L_8974575_SNP [dm6]	G	A	4.806e^-4	0.878	INTRON CG9541
X	2785080	X_2785080_SNP [dm3] X_2891047_SNP [dm6]	T	C	4.807e^-4	0.878	INTRON kirre & 1 other	TF binding site mE1_TFBS_chinmo
2L	10873626	2L_10873626_SNP [dm3] 2L_10873626_SNP [dm6]	T	A	4.812e^-4	0.878	INTERGENIC
2L	6448719	2L_6448719_SNP [dm3] 2L_6448719_SNP [dm6]	A	C	4.815e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
3R	13355445	3R_13355445_SNP [dm3] 3R_17529723_SNP [dm6]	G	T	4.817e^-4	0.878	INTERGENIC
3L	12145239	3L_12145239_SNP [dm3] 3L_12152139_SNP [dm6]	G	A	4.818e^-4	0.878	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	14550405	2L_14550405_SNP [dm3] 2L_14550405_SNP [dm6]	T	A	4.819e^-4	0.878	EXON CR44853
X	606387	X_606387_DEL [dm3] X_712354_DEL [dm6]	AA	A	4.833e^-4	0.878	INTRON sdk
3R	17525506	3R_17525506_SNP [dm3] 3R_21699784_SNP [dm6]	G	T	4.838e^-4	0.878	INTRON CG31176
2L	10873588	2L_10873588_SNP [dm3] 2L_10873588_SNP [dm6]	T	C	4.846e^-4	0.878	INTERGENIC
3L	10155802	3L_10155802_SNP [dm3] 3L_10162702_SNP [dm6]	G	A	4.848e^-4	0.878	INTRON dpr10
2R	17290151	2R_17290151_SNP [dm3] 2R_21402646_SNP [dm6]	G	C	4.857e^-4	0.878	INTRON Sdc
2R	5124578	2R_5124578_SNP [dm3] 2R_9237073_SNP [dm6]	T	C	4.858e^-4	0.878	UPSTREAM Cyp4p2 INTRON hig	transposable element FlyBase
3R	13355669	3R_13355669_SNP [dm3] 3R_17529947_SNP [dm6]	T	A	4.860e^-4	0.878	INTERGENIC
3R	16231318	3R_16231318_SNP [dm3] 3R_20405596_SNP [dm6]	A	C	4.861e^-4	0.878	INTRON Gfrl
3L	2493926	3L_2493926_DEL [dm3] 3L_2493926_DEL [dm6]	CATACACAAAC...	C	4.861e^-4	0.878	UPSTREAM CG45186 INTRON CG45186
3L	15900836	3L_15900836_SNP [dm3] 3L_15907736_SNP [dm6]	C	A	4.863e^-4	0.878	INTRON sff
2L	7096097	2L_7096097_SNP [dm3] 2L_7096097_SNP [dm6]	T	A	4.866e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19032358	3R_19032358_SNP [dm3] 3R_23206636_SNP [dm6]	T	G	4.868e^-4	0.878	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	7422980	3L_7422980_SNP [dm3] 3L_7429880_SNP [dm6]	C	A	4.870e^-4	0.878	INTRON CG42458	TF binding site mE1_TFBS_HSA
3R	22211807	3R_22211807_SNP [dm3] 3R_26386085_SNP [dm6]	T	C	4.873e^-4	0.878	INTERGENIC
3L	21854585	3L_21854585_SNP [dm3] 3L_21861485_SNP [dm6]	A	C	4.875e^-4	0.878	INTRON mub
2R	14365778	2R_14365778_SNP [dm3] 2R_18478273_SNP [dm6]	A	C	4.877e^-4	0.878	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14365779	2R_14365779_SNP [dm3] 2R_18478274_SNP [dm6]	C	A	4.877e^-4	0.878	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16973903	2R_16973903_SNP [dm3] 2R_21086398_SNP [dm6]	T	G	4.890e^-4	0.878	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15141290	2R_15141290_SNP [dm3] 2R_19253785_SNP [dm6]	A	G	4.890e^-4	0.878	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14323674	X_14323674_SNP [dm3] X_14429641_SNP [dm6]	A	G	4.896e^-4	0.878	INTRON dpr8
2L	9009909	2L_9009909_SNP [dm3] 2L_9009909_SNP [dm6]	T	C	4.897e^-4	0.878	UPSTREAM CG9568 INTERGENIC
3L	1020043	3L_1020043_SNP [dm3] 3L_1020043_SNP [dm6]	G	A	4.898e^-4	0.878	INTRON trio

By genomic position
Variant impact
Gene name

mn_Triglyceri_LoDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results