DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.775e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2028 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23254918	3R_23254918_SNP [dm3] 3R_27429196_SNP [dm6]	A	G	3.159e^-7	0.592	INTRON side
2R	1099034	2R_1099034_SNP [dm3] 2R_5211529_SNP [dm6]	A	T	1.488e^-6	0.598	INTRON Nipped-A
3R	23254891	3R_23254891_SNP [dm3] 3R_27429169_SNP [dm6]	T	A	2.110e^-6	0.598	INTRON side
2R	1099224	2R_1099224_SNP [dm3] 2R_5211719_SNP [dm6]	A	T	2.287e^-6	0.598	INTRON Nipped-A	transposable element FlyBase
3R	14993307	3R_14993307_SNP [dm3] 3R_19167585_SNP [dm6]	C	G	2.416e^-6	0.598	INTRON sqz
3R	14993376	3R_14993376_SNP [dm3] 3R_19167654_SNP [dm6]	C	T	2.416e^-6	0.598	INTRON sqz	TF binding site mE1_TFBS_cad
X	14395121	X_14395121_SNP [dm3] X_14501088_SNP [dm6]	A	C	2.815e^-6	0.598	INTERGENIC
3L	13128699	3L_13128699_INS [dm3] 3L_13135599_INS [dm6]	T	TAGCA	2.969e^-6	0.598	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13128705	3L_13128705_INS [dm3] 3L_13135605_INS [dm6]	A	AGCATATAT	2.969e^-6	0.598	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2561270	3L_2561270_SNP [dm3] 3L_2561270_SNP [dm6]	A	C	3.279e^-6	0.598	INTRON msn
3L	13128758	3L_13128758_SNP [dm3] 3L_13135658_SNP [dm6]	A	T	3.509e^-6	0.598	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15003212	3R_15003212_SNP [dm3] 3R_19177490_SNP [dm6]	G	A	3.983e^-6	0.622	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12896910	2R_12896910_INS [dm3] 2R_17009405_INS [dm6]	C	AGGCCG	4.438e^-6	0.628	INTRON Ehbp1	TF binding site mE1_TFBS_cad
3L	13128702	3L_13128702_SNP [dm3] 3L_13135602_SNP [dm6]	A	T	5.557e^-6	0.628	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9806937	2R_9806937_SNP [dm3] 2R_13919432_SNP [dm6]	A	G	5.794e^-6	0.628	INTRON shot	TF binding site mE1_TFBS_Trl
2R	9145921	2R_9145921_SNP [dm3] 2R_13258416_SNP [dm6]	G	C	5.860e^-6	0.628	NON_SYNONYMOUS_CODING CG10799 DOWNSTREAM CG4716
2R	16309045	2R_16309045_SNP [dm3] 2R_20421540_SNP [dm6]	C	G	6.185e^-6	0.628	INTERGENIC
2L	3104072	2L_3104072_SNP [dm3] 2L_3104072_SNP [dm6]	A	C	6.603e^-6	0.628	INTRON toc
3L	2124997	3L_2124997_DEL [dm3] 3L_2124997_DEL [dm6]	AA	A	6.847e^-6	0.628	INTRON zormin
2R	16309049	2R_16309049_SNP [dm3] 2R_20421544_SNP [dm6]	A	T	6.980e^-6	0.628	INTERGENIC
X	20411243	X_20411243_SNP [dm3] X_20540216_SNP [dm6]	C	T	7.280e^-6	0.628	INTRON RunxB	TF binding site mE1_TFBS_inv
3L	13128712	3L_13128712_SNP [dm3] 3L_13135612_SNP [dm6]	T	C	7.376e^-6	0.628	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9990835	2L_9990835_DEL [dm3] 2L_9990835_DEL [dm6]	AGGTATGA	A	7.835e^-6	0.629	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	11245361	2R_11245361_SNP [dm3] 2R_15357856_SNP [dm6]	A	G	8.422e^-6	0.629	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	3498569	2L_3498569_SNP [dm3] 2L_3498569_SNP [dm6]	C	G	8.823e^-6	0.629	INTRON tim
2L	12512137	2L_12512137_SNP [dm3] 2L_12512137_SNP [dm6]	G	C	9.594e^-6	0.629	INTRON bun
2L	2737863	2L_2737863_SNP [dm3] 2L_2737863_SNP [dm6]	C	T	9.824e^-6	0.629	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914
3L	13128681	3L_13128681_SNP [dm3] 3L_13135581_SNP [dm6]	A	G	1.041e^-5	0.629	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19324053	X_19324053_SNP [dm3] X_19430020_SNP [dm6]	T	C	1.070e^-5	0.629	INTRON kek5
2R	6788862	2R_6788862_SNP [dm3] 2R_10901357_SNP [dm6]	G	T	1.077e^-5	0.629	INTERGENIC
3R	20604050	3R_20604050_SNP [dm3] 3R_24778328_SNP [dm6]	T	C	1.151e^-5	0.629	INTRON CG42331
3R	22166339	3R_22166339_SNP [dm3] 3R_26340617_SNP [dm6]	T	G	1.253e^-5	0.629	INTRON CG33970
2R	16929277	2R_16929277_SNP [dm3] 2R_21041772_SNP [dm6]	T	A	1.280e^-5	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4732432	X_4732432_DEL [dm3] X_4838399_DEL [dm6]	ATACC	T	1.373e^-5	0.629	INTERGENIC
X	4732439	X_4732439_SNP [dm3] X_4838406_SNP [dm6]	A	T	1.373e^-5	0.629	INTERGENIC
2L	1848969	2L_1848969_SNP [dm3] 2L_1848969_SNP [dm6]	T	G	1.394e^-5	0.629	INTRON wry
3R	21455243	3R_21455243_SNP [dm3] 3R_25629521_SNP [dm6]	G	T	1.414e^-5	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20411217	X_20411217_SNP [dm3] X_20540190_SNP [dm6]	A	G	1.447e^-5	0.629	INTRON RunxB	TF binding site mE1_TFBS_inv
3R	27165408	3R_27165408_SNP [dm3] 3R_31339686_SNP [dm6]	C	G	1.454e^-5	0.629	INTRON CG34347
3R	25217332	3R_25217332_DEL [dm3] 3R_29391610_DEL [dm6]	TT	T	1.496e^-5	0.629	INTRON Ptp99A
2L	3104089	2L_3104089_SNP [dm3] 2L_3104089_SNP [dm6]	G	A	1.529e^-5	0.629	INTRON toc
3R	14983084	3R_14983084_SNP [dm3] 3R_19157362_SNP [dm6]	G	A	1.538e^-5	0.629	UTR_5_PRIME nos UPSTREAM CG11779 INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	1.544e^-5	0.629	INTRON CG34340
2R	12967499	2R_12967499_SNP [dm3] 2R_17079994_SNP [dm6]	T	G	1.556e^-5	0.629	INTRON CG30460
2L	11599129	2L_11599129_SNP [dm3] 2L_11599129_SNP [dm6]	T	A	1.556e^-5	0.629	INTRON kek2
2R	18728650	2R_18728650_SNP [dm3] 2R_22841127_SNP [dm6]	G	A	1.560e^-5	0.629	SYNONYMOUS_CODING CG9826	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3104090	2L_3104090_SNP [dm3] 2L_3104090_SNP [dm6]	C	G	1.577e^-5	0.629	INTRON toc
3R	14173584	3R_14173584_SNP [dm3] 3R_18347862_SNP [dm6]	A	T	1.816e^-5	0.709	INTRON CG15803
2L	9726606	2L_9726606_SNP [dm3] 2L_9726606_SNP [dm6]	C	T	1.864e^-5	0.713	INTRON Nckx30C
3R	18556029	3R_18556029_SNP [dm3] 3R_22730307_SNP [dm6]	A	C	1.947e^-5	0.723	UTR_3_PRIME CG45049
2L	3284659	2L_3284659_SNP [dm3] 2L_3284659_SNP [dm6]	A	T	1.968e^-5	0.723	INTERGENIC
3L	2567886	3L_2567886_SNP [dm3] 3L_2567886_SNP [dm6]	G	A	2.072e^-5	0.725	INTRON msn	regulatory region REDfly_CRMs
3L	15017005	3L_15017005_SNP [dm3] 3L_15023905_SNP [dm6]	C	T	2.085e^-5	0.725	UTR_3_PRIME CG32148 INTRON Sytbeta
3R	17661350	3R_17661350_SNP [dm3] 3R_21835628_SNP [dm6]	T	G	2.094e^-5	0.725	INTERGENIC
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	2.128e^-5	0.725	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18025945	2R_18025945_SNP [dm3] 2R_22138440_SNP [dm6]	G	A	2.245e^-5	0.742	UPSTREAM CG11269 INTRON a
X	10149971	X_10149971_SNP [dm3] X_10255938_SNP [dm6]	G	A	2.369e^-5	0.742	UPSTREAM CR43959 INTRON Hk
3L	2561254	3L_2561254_SNP [dm3] 3L_2561254_SNP [dm6]	G	A	2.446e^-5	0.742	INTRON msn
2R	12964987	2R_12964987_SNP [dm3] 2R_17077482_SNP [dm6]	C	G	2.448e^-5	0.742	INTRON CG30460
3L	7921507	3L_7921507_SNP [dm3] 3L_7928407_SNP [dm6]	T	A	2.466e^-5	0.742	SPLICE_SITE_REGION syd INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4901956	2L_4901956_SNP [dm3] 2L_4901956_SNP [dm6]	A	G	2.507e^-5	0.742	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12181760	X_12181760_SNP [dm3] X_12287727_SNP [dm6]	A	G	2.544e^-5	0.742	INTRON Ten-a
2R	16517402	2R_16517402_SNP [dm3] 2R_20629897_SNP [dm6]	G	A	2.549e^-5	0.742	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
X	5224574	X_5224574_SNP [dm3] X_5330541_SNP [dm6]	C	A	2.691e^-5	0.742	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21973466	3R_21973466_SNP [dm3] 3R_26147744_SNP [dm6]	T	G	2.748e^-5	0.742	INTERGENIC
3R	25704774	3R_25704774_SNP [dm3] 3R_29879052_SNP [dm6]	G	A	2.748e^-5	0.742	SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8044099	2L_8044099_SNP [dm3] 2L_8044099_SNP [dm6]	G	T	2.783e^-5	0.742	INTRON CG7466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14558686	2R_14558686_SNP [dm3] 2R_18671181_SNP [dm6]	T	C	2.784e^-5	0.742	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1849007	2L_1849007_SNP [dm3] 2L_1849007_SNP [dm6]	T	C	2.874e^-5	0.742	INTRON wry
3R	14173589	3R_14173589_SNP [dm3] 3R_18347867_SNP [dm6]	T	C	2.930e^-5	0.742	INTRON CG15803
2R	8579289	2R_8579289_SNP [dm3] 2R_12691784_SNP [dm6]	A	T	2.953e^-5	0.742	SPLICE_SITE_REGION CG8768 UPSTREAM Obp49a INTRON CG8768	TF binding site mE1_TFBS_sens
3R	19310439	3R_19310439_SNP [dm3] 3R_23484717_SNP [dm6]	C	T	2.963e^-5	0.742	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14173629	3R_14173629_SNP [dm3] 3R_18347907_SNP [dm6]	A	T	3.042e^-5	0.742	INTRON CG15803
X	9487660	X_9487660_SNP [dm3] X_9593627_SNP [dm6]	C	T	3.069e^-5	0.742	INTERGENIC
2L	11883718	2L_11883718_SNP [dm3] 2L_11883718_SNP [dm6]	C	T	3.085e^-5	0.742	INTRON Pde1c
2L	9990848	2L_9990848_INS [dm3] 2L_9990848_INS [dm6]	T	TT	3.094e^-5	0.742	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	19310415	3R_19310415_SNP [dm3] 3R_23484693_SNP [dm6]	C	T	3.151e^-5	0.742	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20902093	3L_20902093_SNP [dm3] 3L_20908993_SNP [dm6]	T	A	3.177e^-5	0.742	INTERGENIC
2L	13632652	2L_13632652_SNP [dm3] 2L_13632652_SNP [dm6]	T	A	3.234e^-5	0.742	DOWNSTREAM CR43410 INTRON kuz
3R	9879534	3R_9879534_DEL [dm3] 3R_14053812_DEL [dm6]	CC	C	3.243e^-5	0.742	INTERGENIC
3L	10155969	3L_10155969_SNP [dm3] 3L_10162869_SNP [dm6]	T	A	3.293e^-5	0.742	INTRON dpr10
3L	10155802	3L_10155802_SNP [dm3] 3L_10162702_SNP [dm6]	G	A	3.463e^-5	0.742	INTRON dpr10
3L	2567863	3L_2567863_SNP [dm3] 3L_2567863_SNP [dm6]	C	A	3.518e^-5	0.742	INTRON msn	regulatory region REDfly_CRMs
2R	7293754	2R_7293754_SNP [dm3] 2R_11406249_SNP [dm6]	A	T	3.540e^-5	0.742	SYNONYMOUS_CODING CG7759 UPSTREAM tRNA:CR45107
3L	2567870	3L_2567870_SNP [dm3] 3L_2567870_SNP [dm6]	T	A	3.599e^-5	0.742	INTRON msn	regulatory region REDfly_CRMs
3L	1824031	3L_1824031_SNP [dm3] 3L_1824031_SNP [dm6]	C	A	3.600e^-5	0.742	DOWNSTREAM Cpr62Ba INTERGENIC
2R	20507919	2R_20507919_SNP [dm3] 2R_24620396_SNP [dm6]	T	A	3.744e^-5	0.742	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	2567893	3L_2567893_SNP [dm3] 3L_2567893_SNP [dm6]	A	G	3.750e^-5	0.742	INTRON msn	regulatory region REDfly_CRMs
3R	27189959	3R_27189959_SNP [dm3] 3R_31364237_SNP [dm6]	C	A	3.780e^-5	0.742	INTRON CG34347
3L	2561124	3L_2561124_SNP [dm3] 3L_2561124_SNP [dm6]	T	A	3.788e^-5	0.742	INTRON msn
2L	916066	2L_916066_SNP [dm3] 2L_916066_SNP [dm6]	G	C	3.796e^-5	0.742	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10787484	X_10787484_DEL [dm3] X_10893451_DEL [dm6]	ATAATGTT	A	3.880e^-5	0.742	DOWNSTREAM CR45617 INTRON CR44524
3R	11709513	3R_11709513_SNP [dm3] 3R_15883791_SNP [dm6]	T	C	3.907e^-5	0.742	INTERGENIC
3L	20923190	3L_20923190_SNP [dm3] 3L_20930090_SNP [dm6]	C	T	3.922e^-5	0.742	DOWNSTREAM CG10589 INTRON fng
2L	903827	2L_903827_SNP [dm3] 2L_903827_SNP [dm6]	C	T	3.923e^-5	0.742	UPSTREAM CR45261 INTERGENIC
2R	11203292	2R_11203292_SNP [dm3] 2R_15315787_SNP [dm6]	C	T	3.988e^-5	0.742	NON_SYNONYMOUS_CODING mus210
2R	13397188	2R_13397188_INS [dm3] 2R_17509683_INS [dm6]	T	TT	3.998e^-5	0.742	UTR_5_PRIME CG34193 UPSTREAM CG34193
3R	12924178	3R_12924178_SNP [dm3] 3R_17098456_SNP [dm6]	T	C	4.000e^-5	0.742	INTRON cher
X	7518282	X_7518282_SNP [dm3] X_7624249_SNP [dm6]	C	G	4.011e^-5	0.742	INTRON ct
3R	13385559	3R_13385559_SNP [dm3] 3R_17559837_SNP [dm6]	A	G	4.127e^-5	0.742	SYNONYMOUS_CODING Hmx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7983120	2R_7983120_SNP [dm3] 2R_12095615_SNP [dm6]	T	A	4.144e^-5	0.742	INTRON jeb
3R	22116923	3R_22116923_SNP [dm3] 3R_26291201_SNP [dm6]	A	C	4.145e^-5	0.742	INTERGENIC
X	13904703	X_13904703_SNP [dm3] X_14010670_SNP [dm6]	T	A	4.164e^-5	0.742	INTERGENIC
3R	25438006	3R_25438006_SNP [dm3] 3R_29612284_SNP [dm6]	T	G	4.278e^-5	0.742	INTRON alph
X	17621185	X_17621185_SNP [dm3] X_17727152_SNP [dm6]	C	T	4.309e^-5	0.742	INTRON CG42684
2R	17362257	2R_17362257_SNP [dm3] 2R_21474752_SNP [dm6]	A	C	4.443e^-5	0.742	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18109262	2R_18109262_SNP [dm3] 2R_22221757_SNP [dm6]	A	T	4.465e^-5	0.742	NON_SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
3R	26286759	3R_26286759_SNP [dm3] 3R_30461037_SNP [dm6]	T	G	4.481e^-5	0.742	INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26634268	3R_26634268_SNP [dm3] 3R_30808546_SNP [dm6]	C	G	4.523e^-5	0.742	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	5493158	2L_5493158_SNP [dm3] 2L_5493158_SNP [dm6]	C	A	4.554e^-5	0.742	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14173543	3R_14173543_SNP [dm3] 3R_18347821_SNP [dm6]	T	A	4.558e^-5	0.742	INTRON CG15803
3R	22211626	3R_22211626_SNP [dm3] 3R_26385904_SNP [dm6]	C	T	4.599e^-5	0.742	INTERGENIC
3R	21408483	3R_21408483_SNP [dm3] 3R_25582761_SNP [dm6]	C	T	4.634e^-5	0.742	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
2R	18376506	2R_18376506_SNP [dm3] 2R_22489001_SNP [dm6]	G	A	4.637e^-5	0.742	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
2R	16517396	2R_16517396_SNP [dm3] 2R_20629891_SNP [dm6]	G	A	4.640e^-5	0.742	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
3R	22167961	3R_22167961_DEL [dm3] 3R_26342239_DEL [dm6]	CTT	C	4.655e^-5	0.742	INTRON CG33970
2R	1096853	2R_1096853_SNP [dm3] 2R_5209348_SNP [dm6]	T	C	4.666e^-5	0.742	INTRON Nipped-A
3L	9563296	3L_9563296_INS [dm3] 3L_9570196_INS [dm6]	C	CC	4.689e^-5	0.742	INTRON CG42673
3R	21864326	3R_21864326_SNP [dm3] 3R_26038604_SNP [dm6]	C	T	4.737e^-5	0.742	DOWNSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	17940213	2R_17940213_SNP [dm3] 2R_22052708_SNP [dm6]	G	A	4.749e^-5	0.742	INTERGENIC
2R	1098986	2R_1098986_SNP [dm3] 2R_5211481_SNP [dm6]	T	C	4.799e^-5	0.743	INTRON Nipped-A
3L	2568029	3L_2568029_SNP [dm3] 3L_2568029_SNP [dm6]	G	T	4.851e^-5	0.745	INTRON msn
2R	1101653	2R_1101653_SNP [dm3] 2R_5214148_SNP [dm6]	A	T	5.010e^-5	0.762	INTRON Nipped-A
3R	23250529	3R_23250529_SNP [dm3] 3R_27424807_SNP [dm6]	A	C	5.075e^-5	0.762	INTRON side
3R	21412911	3R_21412911_SNP [dm3] 3R_25587189_SNP [dm6]	A	G	5.081e^-5	0.762	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14214935	3L_14214935_SNP [dm3] 3L_14221835_SNP [dm6]	C	G	5.300e^-5	0.779	INTRON nuf
3L	2568018	3L_2568018_SNP [dm3] 3L_2568018_SNP [dm6]	C	T	5.316e^-5	0.779	INTRON msn	regulatory region REDfly_CRMs
3L	2567831	3L_2567831_INS [dm3] 3L_2567831_INS [dm6]	G	GGGAATTCTCG...	5.388e^-5	0.779	INTRON msn	regulatory region REDfly_CRMs
3R	22118997	3R_22118997_SNP [dm3] 3R_26293275_SNP [dm6]	G	A	5.424e^-5	0.779	INTERGENIC
3R	13108881	3R_13108881_SNP [dm3] 3R_17283159_SNP [dm6]	A	T	5.455e^-5	0.779	UPSTREAM CG31418 INTERGENIC
3R	20600728	3R_20600728_SNP [dm3] 3R_24775006_SNP [dm6]	G	C	5.496e^-5	0.779	INTRON CG42331
3L	6611836	3L_6611836_SNP [dm3] 3L_6618736_SNP [dm6]	A	G	5.539e^-5	0.779	UTR_3_PRIME CG8398 DOWNSTREAM CG8398
X	19505222	X_19505222_SNP [dm3] X_19611189_SNP [dm6]	C	T	5.619e^-5	0.779	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other DOWNSTREAM CG14207
2R	12965128	2R_12965128_SNP [dm3] 2R_17077623_SNP [dm6]	T	C	5.633e^-5	0.779	INTRON CG30460
2L	4487433	2L_4487433_SNP [dm3] 2L_4487433_SNP [dm6]	T	C	5.649e^-5	0.779	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22807306	3R_22807306_SNP [dm3] 3R_26981584_SNP [dm6]	A	C	5.650e^-5	0.779	UTR_5_PRIME CG14253 INTRON CG14253
3R	21973631	3R_21973631_SNP [dm3] 3R_26147909_SNP [dm6]	T	C	5.833e^-5	0.792	INTERGENIC
2R	1098960	2R_1098960_SNP [dm3] 2R_5211455_SNP [dm6]	G	C	5.918e^-5	0.792	INTRON Nipped-A	transposable element FlyBase
2R	11244737	2R_11244737_SNP [dm3] 2R_15357232_SNP [dm6]	C	G	5.980e^-5	0.792	NON_SYNONYMOUS_CODING unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5507374	X_5507374_SNP [dm3] X_5613341_SNP [dm6]	A	G	6.054e^-5	0.792	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
3R	14980554	3R_14980554_SNP [dm3] 3R_19154832_SNP [dm6]	T	C	6.165e^-5	0.792	UTR_3_PRIME CG11779
2L	12512274	2L_12512274_SNP [dm3] 2L_12512274_SNP [dm6]	T	C	6.196e^-5	0.792	INTRON bun
X	8708965	X_8708965_SNP [dm3] X_8814932_SNP [dm6]	G	C	6.211e^-5	0.792	INTERGENIC
2L	12512275	2L_12512275_SNP [dm3] 2L_12512275_SNP [dm6]	T	A	6.219e^-5	0.792	INTRON bun
2L	5648458	2L_5648458_INS [dm3] 2L_5648458_INS [dm6]	A	ATA	6.326e^-5	0.792	INTRON CG31646
2L	10061566	2L_10061566_SNP [dm3] 2L_10061566_SNP [dm6]	G	C	6.342e^-5	0.792	INTRON Spn31A
2L	11967637	2L_11967637_SNP [dm3] 2L_11967637_SNP [dm6]	G	T	6.404e^-5	0.792	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	15287226	2R_15287226_SNP [dm3] 2R_19399721_SNP [dm6]	T	C	6.444e^-5	0.792	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
2L	6048227	2L_6048227_SNP [dm3] 2L_6048227_SNP [dm6]	T	C	6.513e^-5	0.792	SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18203120	2R_18203120_SNP [dm3] 2R_22315615_SNP [dm6]	G	T	6.541e^-5	0.792	INTRON CR44758
3L	2469911	3L_2469911_SNP [dm3] 3L_2469911_SNP [dm6]	T	G	6.564e^-5	0.792	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11536384	3L_11536384_SNP [dm3] 3L_11543284_SNP [dm6]	T	C	6.587e^-5	0.792	INTRON Mob2
3L	2567846	3L_2567846_SNP [dm3] 3L_2567846_SNP [dm6]	G	T	6.596e^-5	0.792	INTRON msn	regulatory region REDfly_CRMs
2L	7271471	2L_7271471_SNP [dm3] 2L_7271471_SNP [dm6]	T	A	6.621e^-5	0.792	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	3109734	2L_3109734_INS [dm3] 2L_3109734_INS [dm6]	A	AACA	6.621e^-5	0.792	CODON_INSERTION PpD6 INTRON toc
X	10787418	X_10787418_SNP [dm3] X_10893385_SNP [dm6]	A	T	6.679e^-5	0.792	DOWNSTREAM CR45617 EXON CR44524
3L	2568006	3L_2568006_SNP [dm3] 3L_2568006_SNP [dm6]	C	T	6.697e^-5	0.792	INTRON msn	regulatory region REDfly_CRMs
2R	1099074	2R_1099074_SNP [dm3] 2R_5211569_SNP [dm6]	C	T	6.710e^-5	0.792	INTRON Nipped-A
3R	18845417	3R_18845417_SNP [dm3] 3R_23019695_SNP [dm6]	A	C	6.793e^-5	0.792	INTERGENIC
2L	17130903	2L_17130903_SNP [dm3] 2L_17130903_SNP [dm6]	A	G	6.817e^-5	0.792	UPSTREAM beat-IIIa & 1 other INTERGENIC
X	6205618	X_6205618_SNP [dm3] X_6311585_SNP [dm6]	T	G	6.844e^-5	0.792	INTRON CG15894
2L	4185405	2L_4185405_SNP [dm3] 2L_4185405_SNP [dm6]	C	A	6.847e^-5	0.792	DOWNSTREAM CG31961 EXON CR44057
3R	18845667	3R_18845667_SNP [dm3] 3R_23019945_SNP [dm6]	A	G	6.924e^-5	0.792	INTERGENIC
2R	1094256	2R_1094256_SNP [dm3] 2R_5206751_SNP [dm6]	G	T	6.928e^-5	0.792	INTRON Nipped-A	transposable element FlyBase
X	17674583	X_17674583_SNP [dm3] X_17780550_SNP [dm6]	T	A	7.141e^-5	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17621660	X_17621660_DEL [dm3] X_17727627_DEL [dm6]	GTGCCAG	G	7.151e^-5	0.804	INTRON CG42684
3R	22175880	3R_22175880_SNP [dm3] 3R_26350158_SNP [dm6]	T	C	7.168e^-5	0.804	SYNONYMOUS_CODING CG33970
3L	2541282	3L_2541282_SNP [dm3] 3L_2541282_SNP [dm6]	T	G	7.212e^-5	0.805	UTR_5_PRIME Spn
2L	12512270	2L_12512270_SNP [dm3] 2L_12512270_SNP [dm6]	T	G	7.273e^-5	0.807	INTRON bun
2L	11319385	2L_11319385_SNP [dm3] 2L_11319385_SNP [dm6]	T	C	7.429e^-5	0.808	DOWNSTREAM CR44583 INTERGENIC
2L	4029361	2L_4029361_SNP [dm3] 2L_4029361_SNP [dm6]	A	G	7.584e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14214918	3L_14214918_SNP [dm3] 3L_14221818_SNP [dm6]	T	C	7.597e^-5	0.808	INTRON nuf
X	17674543	X_17674543_SNP [dm3] X_17780510_SNP [dm6]	G	T	7.612e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3068870	X_3068870_SNP [dm3] X_3174837_SNP [dm6]	C	T	7.624e^-5	0.808	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	12383510	X_12383510_SNP [dm3] X_12489477_SNP [dm6]	T	A	7.644e^-5	0.808	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17661351	3R_17661351_SNP [dm3] 3R_21835629_SNP [dm6]	A	C	7.648e^-5	0.808	INTERGENIC
3R	10220668	3R_10220668_SNP [dm3] 3R_14394946_SNP [dm6]	G	T	7.662e^-5	0.808	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25157259	3R_25157259_SNP [dm3] 3R_29331537_SNP [dm6]	G	A	7.691e^-5	0.808	INTERGENIC
3L	17930072	3L_17930072_SNP [dm3] 3L_17936972_SNP [dm6]	A	G	7.855e^-5	0.808	INTRON CG43174
2L	16614015	2L_16614015_SNP [dm3] 2L_16614015_SNP [dm6]	C	A	7.861e^-5	0.808	INTRON CG42389
3L	12031304	3L_12031304_SNP [dm3] 3L_12038204_SNP [dm6]	T	C	7.898e^-5	0.808	INTRON rols
3R	15003576	3R_15003576_SNP [dm3] 3R_19177854_SNP [dm6]	A	C	7.910e^-5	0.808	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
2L	13439845	2L_13439845_SNP [dm3] 2L_13439845_SNP [dm6]	T	A	7.952e^-5	0.808	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
X	5231712	X_5231712_SNP [dm3] X_5337679_SNP [dm6]	G	A	7.963e^-5	0.808	INTERGENIC
3R	19036123	3R_19036123_SNP [dm3] 3R_23210401_SNP [dm6]	A	T	7.979e^-5	0.808	INTRON cnc	TF binding site mE1_TFBS_Trl
X	3068864	X_3068864_SNP [dm3] X_3174831_SNP [dm6]	G	T	8.042e^-5	0.808	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	3068883	X_3068883_SNP [dm3] X_3174850_SNP [dm6]	T	C	8.095e^-5	0.808	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	6487253	X_6487253_SNP [dm3] X_6593220_SNP [dm6]	A	G	8.102e^-5	0.808	UPSTREAM CR43832 INTRON Pat1
X	8389654	X_8389654_INS [dm3] X_8495621_INS [dm6]	T	TCTAGGATTTTTCAATTTTT...	8.147e^-5	0.808	INTRON CG33181
3L	10612282	3L_10612282_SNP [dm3] 3L_10619182_SNP [dm6]	G	T	8.360e^-5	0.816	INTERGENIC
2L	4474389	2L_4474389_SNP [dm3] 2L_4474389_SNP [dm6]	T	C	8.389e^-5	0.816	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20941290	3L_20941290_SNP [dm3] 3L_20948190_SNP [dm6]	T	C	8.431e^-5	0.816	INTRON fng
X	3068874	X_3068874_SNP [dm3] X_3174841_SNP [dm6]	G	C	8.469e^-5	0.816	UPSTREAM CG3939 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	2568002	3L_2568002_INS [dm3] 3L_2568002_INS [dm6]	GT	ACATA	8.492e^-5	0.816	INTRON msn	regulatory region REDfly_CRMs
2L	14114851	2L_14114851_SNP [dm3] 2L_14114851_SNP [dm6]	G	A	8.580e^-5	0.816	INTERGENIC
X	10787410	X_10787410_SNP [dm3] X_10893377_SNP [dm6]	A	T	8.594e^-5	0.816	DOWNSTREAM CR45617 EXON CR44524
X	10084472	X_10084472_SNP [dm3] X_10190439_SNP [dm6]	A	G	8.702e^-5	0.816	INTRON CR44894 & 1 other
3R	25704302	3R_25704302_SNP [dm3] 3R_29878580_SNP [dm6]	A	G	8.772e^-5	0.816	NON_SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo
2R	17830856	2R_17830856_SNP [dm3] 2R_21943351_SNP [dm6]	T	C	8.822e^-5	0.816	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo
2L	4487435	2L_4487435_SNP [dm3] 2L_4487435_SNP [dm6]	C	T	8.824e^-5	0.816	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16866270	3R_16866270_SNP [dm3] 3R_21040548_SNP [dm6]	C	T	8.964e^-5	0.816	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3630399	2L_3630399_SNP [dm3] 2L_3630399_SNP [dm6]	C	A	9.014e^-5	0.816	INTRON for
2L	12512269	2L_12512269_SNP [dm3] 2L_12512269_SNP [dm6]	G	T	9.020e^-5	0.816	INTRON bun
2R	16487275	2R_16487275_SNP [dm3] 2R_20599770_SNP [dm6]	C	G	9.033e^-5	0.816	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13395952	3R_13395952_SNP [dm3] 3R_17570230_SNP [dm6]	G	A	9.085e^-5	0.816	INTERGENIC
3L	10609037	3L_10609037_SNP [dm3] 3L_10615937_SNP [dm6]	G	A	9.093e^-5	0.816	INTERGENIC
3L	5325082	3L_5325082_SNP [dm3] 3L_5331982_SNP [dm6]	T	G	9.147e^-5	0.816	INTERGENIC
3L	6699741	3L_6699741_SNP [dm3] 3L_6706641_SNP [dm6]	T	A	9.148e^-5	0.816	UPSTREAM CG8519 INTRON CG8519
2R	1742336	2R_1742336_SNP [dm3] 2R_5854831_SNP [dm6]	A	G	9.165e^-5	0.816	INTRON dpr12
3R	22175918	3R_22175918_SNP [dm3] 3R_26350196_SNP [dm6]	G	A	9.192e^-5	0.816	INTRON CG33970
X	7334485	X_7334485_SNP [dm3] X_7440452_SNP [dm6]	A	G	9.224e^-5	0.816	INTERGENIC
2R	8409721	2R_8409721_SNP [dm3] 2R_12522216_SNP [dm6]	T	A	9.234e^-5	0.816	STOP_LOST CG33632 DOWNSTREAM CG8569
3R	20603245	3R_20603245_SNP [dm3] 3R_24777523_SNP [dm6]	C	A	9.282e^-5	0.816	INTRON CG42331
2R	8409720	2R_8409720_SNP [dm3] 2R_12522215_SNP [dm6]	T	G	9.318e^-5	0.816	SYNONYMOUS_CODING CG33632 DOWNSTREAM CG8569
2R	20507913	2R_20507913_SNP [dm3] 2R_24620390_SNP [dm6]	T	A	9.368e^-5	0.816	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	18202866	2R_18202866_SNP [dm3] 2R_22315361_SNP [dm6]	G	A	9.453e^-5	0.816	INTRON CR44758
2L	3752970	2L_3752970_SNP [dm3] 2L_3752970_SNP [dm6]	C	T	9.479e^-5	0.816	UTR_3_PRIME CG10019
2R	13833176	2R_13833176_SNP [dm3] 2R_17945671_SNP [dm6]	G	A	9.550e^-5	0.816	INTERGENIC
2R	11519565	2R_11519565_SNP [dm3] 2R_15632060_SNP [dm6]	T	C	9.556e^-5	0.816	INTRON CG42524
2R	16563454	2R_16563454_SNP [dm3] 2R_20675949_SNP [dm6]	G	T	9.581e^-5	0.816	INTERGENIC
X	16921298	X_16921298_SNP [dm3] X_17027265_SNP [dm6]	C	A	9.731e^-5	0.825	INTRON CG45002
2L	6972188	2L_6972188_SNP [dm3] 2L_6972188_SNP [dm6]	C	A	9.807e^-5	0.825	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	3103431	2L_3103431_SNP [dm3] 2L_3103431_SNP [dm6]	C	G	9.901e^-5	0.825	INTRON toc
2L	3103435	2L_3103435_SNP [dm3] 2L_3103435_SNP [dm6]	T	C	9.901e^-5	0.825	INTRON toc
2R	7823341	2R_7823341_SNP [dm3] 2R_11935836_SNP [dm6]	T	A	9.906e^-5	0.825	INTERGENIC
2R	16309008	2R_16309008_SNP [dm3] 2R_20421503_SNP [dm6]	C	T	1.022e^-4	0.827	INTERGENIC
3R	25877156	3R_25877156_SNP [dm3] 3R_30051434_SNP [dm6]	A	G	1.031e^-4	0.827	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	20940986	3L_20940986_SNP [dm3] 3L_20947886_SNP [dm6]	G	T	1.032e^-4	0.827	INTRON fng
3R	22558537	3R_22558537_SNP [dm3] 3R_26732815_SNP [dm6]	A	G	1.034e^-4	0.827	INTERGENIC
3R	21973704	3R_21973704_SNP [dm3] 3R_26147982_SNP [dm6]	G	C	1.036e^-4	0.827	INTERGENIC
X	17621098	X_17621098_SNP [dm3] X_17727065_SNP [dm6]	T	A	1.038e^-4	0.827	INTRON CG42684
2L	904542	2L_904542_SNP [dm3] 2L_904542_SNP [dm6]	G	T	1.050e^-4	0.827	DOWNSTREAM CR45261 INTERGENIC
3R	25877257	3R_25877257_SNP [dm3] 3R_30051535_SNP [dm6]	A	T	1.052e^-4	0.827	UPSTREAM CG7946 INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	8237767	2R_8237767_SNP [dm3] 2R_12350262_SNP [dm6]	A	G	1.055e^-4	0.827	SYNONYMOUS_CODING ana3	TF binding site mE1_TFBS_sens
2R	15225425	2R_15225425_SNP [dm3] 2R_19337920_SNP [dm6]	T	C	1.057e^-4	0.827	INTRON Rgk1
X	19324123	X_19324123_INS [dm3] X_19430090_INS [dm6]	A	ATAGCA	1.060e^-4	0.827	INTRON kek5
2R	17830784	2R_17830784_SNP [dm3] 2R_21943279_SNP [dm6]	A	G	1.061e^-4	0.827	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo
3L	4665922	3L_4665922_SNP [dm3] 3L_4665922_SNP [dm6]	G	A	1.065e^-4	0.827	DOWNSTREAM CG32236 INTRON axo
2R	1819523	2R_1819523_DEL [dm3] 2R_5932018_DEL [dm6]	TATCGATATCT...	T	1.072e^-4	0.827	DOWNSTREAM CG43366 INTERGENIC	transposable element FlyBase
2R	15287207	2R_15287207_SNP [dm3] 2R_19399702_SNP [dm6]	A	C	1.073e^-4	0.827	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
3R	24010068	3R_24010068_SNP [dm3] 3R_28184346_SNP [dm6]	G	C	1.077e^-4	0.827	INTRON CG34354
2L	16020456	2L_16020456_SNP [dm3] 2L_16020456_SNP [dm6]	A	T	1.078e^-4	0.827	INTRON beat-Ic
3R	26277124	3R_26277124_SNP [dm3] 3R_30451402_SNP [dm6]	A	G	1.078e^-4	0.827	UPSTREAM aralar1 INTRON aralar1
2R	9817732	2R_9817732_DEL [dm3] 2R_13930227_DEL [dm6]	ACA	A	1.080e^-4	0.827	INTRON shot
X	5361099	X_5361099_SNP [dm3] X_5467066_SNP [dm6]	T	A	1.081e^-4	0.827	INTRON SPR
3L	7638753	3L_7638753_SNP [dm3] 3L_7645653_SNP [dm6]	A	G	1.092e^-4	0.831	INTERGENIC
2L	11742037	2L_11742037_SNP [dm3] 2L_11742037_SNP [dm6]	T	C	1.095e^-4	0.831	SYNONYMOUS_CODING Vha100-5	TF binding site mE1_TFBS_chinmo
3R	22813833	3R_22813833_SNP [dm3] 3R_26988111_SNP [dm6]	C	T	1.104e^-4	0.834	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
X	8831990	X_8831990_SNP [dm3] X_8937957_SNP [dm6]	C	A	1.128e^-4	0.839	INTRON rdgA
3R	22175256	3R_22175256_SNP [dm3] 3R_26349534_SNP [dm6]	T	A	1.129e^-4	0.839	INTRON CG33970
3R	16058027	3R_16058027_SNP [dm3] 3R_20232305_SNP [dm6]	A	T	1.137e^-4	0.839	INTRON Nlg4
X	16936009	X_16936009_SNP [dm3] X_17041976_SNP [dm6]	A	G	1.139e^-4	0.839	INTRON CG45002
3L	20828483	3L_20828483_SNP [dm3] 3L_20835383_SNP [dm6]	C	T	1.140e^-4	0.839	UTR_3_PRIME Pka-R1 UPSTREAM CG3288 DOWNSTREAM Pka-R1 & 1 other
2L	3630357	2L_3630357_SNP [dm3] 2L_3630357_SNP [dm6]	T	A	1.144e^-4	0.839	INTRON for
3L	7289502	3L_7289502_SNP [dm3] 3L_7296402_SNP [dm6]	T	A	1.149e^-4	0.839	INTRON unc-13-4A
3L	20902091	3L_20902091_SNP [dm3] 3L_20908991_SNP [dm6]	A	T	1.156e^-4	0.839	INTERGENIC
3L	9249881	3L_9249881_SNP [dm3] 3L_9256781_SNP [dm6]	G	A	1.172e^-4	0.839	INTRON GluRIB
X	7517677	X_7517677_SNP [dm3] X_7623644_SNP [dm6]	C	T	1.181e^-4	0.839	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25515640	3R_25515640_SNP [dm3] 3R_29689918_SNP [dm6]	A	T	1.182e^-4	0.839	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
3L	826239	3L_826239_SNP [dm3] 3L_826239_SNP [dm6]	A	T	1.184e^-4	0.839	DOWNSTREAM CG13900 & 2 others INTERGENIC
2L	4901989	2L_4901989_SNP [dm3] 2L_4901989_SNP [dm6]	C	T	1.185e^-4	0.839	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13632660	2L_13632660_SNP [dm3] 2L_13632660_SNP [dm6]	T	C	1.189e^-4	0.839	DOWNSTREAM CR43410 INTRON kuz
3L	12046344	3L_12046344_SNP [dm3] 3L_12053244_SNP [dm6]	T	A	1.192e^-4	0.839	INTRON rols
X	14606377	X_14606377_INS [dm3] X_14712344_INS [dm6]	T	TT	1.203e^-4	0.839	INTRON NetB
2R	14125922	2R_14125922_SNP [dm3] 2R_18238417_SNP [dm6]	G	T	1.209e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6425421	2R_6425421_SNP [dm3] 2R_10537916_SNP [dm6]	C	A	1.214e^-4	0.839	UPSTREAM snoRNA:lola-c & 1 other INTRON lola	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19868620	3R_19868620_SNP [dm3] 3R_24042898_SNP [dm6]	T	C	1.220e^-4	0.839	UTR_3_PRIME spas DOWNSTREAM Rox8 & 1 other
3R	13382708	3R_13382708_SNP [dm3] 3R_17556986_SNP [dm6]	G	A	1.222e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7921508	3L_7921508_SNP [dm3] 3L_7928408_SNP [dm6]	G	A	1.226e^-4	0.839	SPLICE_SITE_REGION syd INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	743584	X_743584_SNP [dm3] X_849551_SNP [dm6]	T	A	1.229e^-4	0.839	INTRON CG43867
2R	17571907	2R_17571907_SNP [dm3] 2R_21684402_SNP [dm6]	C	A	1.229e^-4	0.839	UPSTREAM CG10306 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13810307	X_13810307_SNP [dm3] X_13916274_SNP [dm6]	G	A	1.232e^-4	0.839	INTRON mamo
3L	2536509	3L_2536509_SNP [dm3] 3L_2536509_SNP [dm6]	G	T	1.236e^-4	0.839	INTRON Spn
3L	2536612	3L_2536612_SNP [dm3] 3L_2536612_SNP [dm6]	A	G	1.236e^-4	0.839	UPSTREAM Spn INTRON Spn
3L	2609564	3L_2609564_SNP [dm3] 3L_2609564_SNP [dm6]	G	T	1.250e^-4	0.839	DOWNSTREAM Pxn INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2567858	3L_2567858_SNP [dm3] 3L_2567858_SNP [dm6]	C	A	1.251e^-4	0.839	INTRON msn	regulatory region REDfly_CRMs
2R	11407382	2R_11407382_SNP [dm3] 2R_15519877_SNP [dm6]	A	G	1.257e^-4	0.839	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
3R	14718673	3R_14718673_SNP [dm3] 3R_18892951_SNP [dm6]	A	C	1.257e^-4	0.839	INTERGENIC
3L	22126110	3L_22126110_INS [dm3] 3L_22133010_INS [dm6]	A	AATAA	1.263e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22175250	3R_22175250_SNP [dm3] 3R_26349528_SNP [dm6]	G	A	1.274e^-4	0.839	INTRON CG33970
2R	17925257	2R_17925257_SNP [dm3] 2R_22037752_SNP [dm6]	A	G	1.286e^-4	0.839	INTRON CG34370
X	10150281	X_10150281_SNP [dm3] X_10256248_SNP [dm6]	G	A	1.286e^-4	0.839	START_GAINED Hk UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
3L	7266950	3L_7266950_SNP [dm3] 3L_7273850_SNP [dm6]	T	G	1.286e^-4	0.839	INTRON unc-13-4A
3L	19255763	3L_19255763_SNP [dm3] 3L_19262663_SNP [dm6]	T	C	1.288e^-4	0.839	UTR_3_PRIME Max DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_cad
2R	1742339	2R_1742339_SNP [dm3] 2R_5854834_SNP [dm6]	C	G	1.292e^-4	0.839	INTRON dpr12
2R	12970401	2R_12970401_SNP [dm3] 2R_17082896_SNP [dm6]	A	T	1.307e^-4	0.839	INTRON CG30460
3L	17544183	3L_17544183_SNP [dm3] 3L_17551083_SNP [dm6]	T	C	1.310e^-4	0.839	UTR_3_PRIME CycT DOWNSTREAM CG7542
2R	1102999	2R_1102999_SNP [dm3] 2R_5215494_SNP [dm6]	G	C	1.313e^-4	0.839	INTRON Nipped-A	transposable element FlyBase
2R	8409606	2R_8409606_SNP [dm3] 2R_12522101_SNP [dm6]	A	T	1.327e^-4	0.839	DOWNSTREAM CG8569 INTRON CG33632
2L	6661886	2L_6661886_SNP [dm3] 2L_6661886_SNP [dm6]	C	A	1.327e^-4	0.839	UTR_3_PRIME CG11070 DOWNSTREAM CG13771	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12220945	X_12220945_INS [dm3] X_12326912_INS [dm6]	T	TT	1.329e^-4	0.839	INTRON Ten-a
2L	7789541	2L_7789541_SNP [dm3] 2L_7789541_SNP [dm6]	A	G	1.336e^-4	0.839	INTRON CG7149
X	8708639	X_8708639_SNP [dm3] X_8814606_SNP [dm6]	T	C	1.336e^-4	0.839	INTERGENIC
2L	8777233	2L_8777233_SNP [dm3] 2L_8777233_SNP [dm6]	T	C	1.341e^-4	0.839	UPSTREAM CG9466 DOWNSTREAM CG9468 INTERGENIC
3R	22175298	3R_22175298_SNP [dm3] 3R_26349576_SNP [dm6]	C	T	1.343e^-4	0.839	INTRON CG33970
2L	900221	2L_900221_SNP [dm3] 2L_900221_SNP [dm6]	T	C	1.354e^-4	0.839	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13682783	3R_13682783_SNP [dm3] 3R_17857061_SNP [dm6]	C	T	1.359e^-4	0.839	INTRON tinc
2L	3752916	2L_3752916_SNP [dm3] 2L_3752916_SNP [dm6]	T	C	1.364e^-4	0.839	UTR_3_PRIME CG10019
3R	20598451	3R_20598451_SNP [dm3] 3R_24772729_SNP [dm6]	A	C	1.370e^-4	0.839	INTRON CG42331
2L	3249373	2L_3249373_SNP [dm3] 2L_3249373_SNP [dm6]	C	T	1.372e^-4	0.839	INTERGENIC
2R	13271852	2R_13271852_SNP [dm3] 2R_17384347_SNP [dm6]	G	C	1.376e^-4	0.839	INTERGENIC
3R	12924194	3R_12924194_SNP [dm3] 3R_17098472_SNP [dm6]	C	T	1.381e^-4	0.839	INTRON cher
2L	3752751	2L_3752751_DEL [dm3] 2L_3752751_DEL [dm6]	TA	C	1.385e^-4	0.839	UTR_3_PRIME CG10019
2L	9649270	2L_9649270_SNP [dm3] 2L_9649270_SNP [dm6]	G	A	1.392e^-4	0.839	SYNONYMOUS_CODING Apoltp
2L	6048217	2L_6048217_SNP [dm3] 2L_6048217_SNP [dm6]	C	A	1.406e^-4	0.839	NON_SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12512165	2L_12512165_SNP [dm3] 2L_12512165_SNP [dm6]	A	G	1.409e^-4	0.839	INTRON bun
3L	6522280	3L_6522280_SNP [dm3] 3L_6529180_SNP [dm6]	T	A	1.410e^-4	0.839	INTRON sfl
2R	14458671	2R_14458671_SNP [dm3] 2R_18571166_SNP [dm6]	G	C	1.419e^-4	0.839	INTRON GEFmeso
2R	17129163	2R_17129163_SNP [dm3] 2R_21241658_SNP [dm6]	A	G	1.421e^-4	0.839	INTRON ASPP
3L	904642	3L_904642_SNP [dm3] 3L_904642_SNP [dm6]	A	G	1.425e^-4	0.839	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10694515	3R_10694515_SNP [dm3] 3R_14868793_SNP [dm6]	A	T	1.426e^-4	0.839	INTRON btsz
X	8389644	X_8389644_SNP [dm3] X_8495611_SNP [dm6]	A	G	1.426e^-4	0.839	INTRON CG33181
X	22253391	X_22253391_SNP [dm3] X_22851555_SNP [dm6]	T	C	1.432e^-4	0.839	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_sna
3R	18845672	3R_18845672_SNP [dm3] 3R_23019950_SNP [dm6]	C	G	1.443e^-4	0.839	INTERGENIC
2L	18679971	2L_18679971_SNP [dm3] 2L_18679971_SNP [dm6]	C	T	1.445e^-4	0.839	NON_SYNONYMOUS_CODING tos INTRON CG31751
X	5507417	X_5507417_SNP [dm3] X_5613384_SNP [dm6]	A	G	1.445e^-4	0.839	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2L	18774462	2L_18774462_SNP [dm3] 2L_18774462_SNP [dm6]	A	T	1.449e^-4	0.839	UPSTREAM CR43804 INTRON ham	TF binding site BDTNP1_TFBS_twi
2L	4901994	2L_4901994_SNP [dm3] 2L_4901994_SNP [dm6]	C	A	1.459e^-4	0.839	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11499913	2L_11499913_SNP [dm3] 2L_11499913_SNP [dm6]	G	A	1.461e^-4	0.839	UPSTREAM CG6488 INTERGENIC
2R	9525415	2R_9525415_SNP [dm3] 2R_13637910_SNP [dm6]	C	A	1.462e^-4	0.839	INTRON fas	TF binding site BDTNP1_TFBS_dl
3R	15447599	3R_15447599_SNP [dm3] 3R_19621877_SNP [dm6]	A	T	1.468e^-4	0.839	UPSTREAM CG6231 INTRON CG6231
2R	12966721	2R_12966721_SNP [dm3] 2R_17079216_SNP [dm6]	C	T	1.471e^-4	0.839	INTRON CG30460
X	17664163	X_17664163_SNP [dm3] X_17770130_SNP [dm6]	T	A	1.472e^-4	0.839	INTRON unc-4
3R	19127364	3R_19127364_SNP [dm3] 3R_23301642_SNP [dm6]	C	T	1.475e^-4	0.839	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15765222	2L_15765222_SNP [dm3] 2L_15765222_SNP [dm6]	A	T	1.483e^-4	0.839	DOWNSTREAM wek INTRON CG3793	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22211836	3R_22211836_SNP [dm3] 3R_26386114_SNP [dm6]	G	A	1.486e^-4	0.839	INTERGENIC
3L	22235408	3L_22235408_SNP [dm3] 3L_22242308_SNP [dm6]	C	G	1.487e^-4	0.839	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18101569	2R_18101569_SNP [dm3] 2R_22214064_SNP [dm6]	A	T	1.487e^-4	0.839	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18109267	2R_18109267_SNP [dm3] 2R_22221762_SNP [dm6]	A	C	1.488e^-4	0.839	NON_SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
2R	17868312	2R_17868312_SNP [dm3] 2R_21980807_SNP [dm6]	T	G	1.489e^-4	0.839	NON_SYNONYMOUS_CODING Gr58a
2L	2333459	2L_2333459_SNP [dm3] 2L_2333459_SNP [dm6]	A	C	1.493e^-4	0.839	INTRON CG9967 & 1 other
2R	4942633	2R_4942633_SNP [dm3] 2R_9055128_SNP [dm6]	G	C	1.494e^-4	0.839	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5506959	X_5506959_SNP [dm3] X_5612926_SNP [dm6]	C	T	1.495e^-4	0.839	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	14807753	X_14807753_SNP [dm3] X_14913720_SNP [dm6]	T	G	1.496e^-4	0.839	SYNONYMOUS_CODING CG12398 INTRON Flo2
X	10787558	X_10787558_SNP [dm3] X_10893525_SNP [dm6]	C	T	1.504e^-4	0.842	DOWNSTREAM CR45617 EXON CR44524
2L	8046097	2L_8046097_SNP [dm3] 2L_8046097_SNP [dm6]	C	T	1.517e^-4	0.845	SYNONYMOUS_CODING CG7466
3R	25836511	3R_25836511_SNP [dm3] 3R_30010789_SNP [dm6]	G	A	1.524e^-4	0.845	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10971554	3R_10971554_SNP [dm3] 3R_15145832_SNP [dm6]	G	C	1.525e^-4	0.845	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10218031	3R_10218031_SNP [dm3] 3R_14392309_SNP [dm6]	A	T	1.533e^-4	0.845	UTR_3_PRIME cv-c
2R	6803855	2R_6803855_SNP [dm3] 2R_10916350_SNP [dm6]	C	T	1.543e^-4	0.845	INTERGENIC
3L	1019066	3L_1019066_SNP [dm3] 3L_1019066_SNP [dm6]	C	T	1.550e^-4	0.845	SYNONYMOUS_CODING trio INTRON trio
3R	18182890	3R_18182890_SNP [dm3] 3R_22357168_SNP [dm6]	C	G	1.553e^-4	0.845	UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	907603	2L_907603_SNP [dm3] 2L_907603_SNP [dm6]	G	A	1.554e^-4	0.845	INTERGENIC
3R	3999842	3R_3999842_DEL [dm3] 3R_8174120_DEL [dm6]	AGCAGTTGCT	A	1.557e^-4	0.845	INTRON grn	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7601044	3L_7601044_SNP [dm3] 3L_7607944_SNP [dm6]	T	C	1.561e^-4	0.845	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7746899	2L_7746899_SNP [dm3] 2L_7746899_SNP [dm6]	A	G	1.564e^-4	0.845	UPSTREAM CG7211 INTERGENIC
2R	18103669	2R_18103669_SNP [dm3] 2R_22216164_SNP [dm6]	G	A	1.571e^-4	0.845	SYNONYMOUS_CODING ari-2
2R	1101758	2R_1101758_SNP [dm3] 2R_5214253_SNP [dm6]	G	T	1.572e^-4	0.845	INTRON Nipped-A
X	12221748	X_12221748_SNP [dm3] X_12327715_SNP [dm6]	T	C	1.579e^-4	0.845	SYNONYMOUS_CODING Ten-a
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	1.579e^-4	0.845	INTRON SF1
2R	10889269	2R_10889269_SNP [dm3] 2R_15001764_SNP [dm6]	T	A	1.584e^-4	0.846	INTERGENIC
2R	7286599	2R_7286599_SNP [dm3] 2R_11399094_SNP [dm6]	A	G	1.590e^-4	0.847	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7295161	2R_7295161_SNP [dm3] 2R_11407656_SNP [dm6]	C	T	1.597e^-4	0.848	SYNONYMOUS_CODING CG7759 DOWNSTREAM CG30026
X	5507155	X_5507155_DEL [dm3] X_5613122_DEL [dm6]	AG	A	1.617e^-4	0.851	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
2R	17014786	2R_17014786_SNP [dm3] 2R_21127281_SNP [dm6]	T	G	1.617e^-4	0.851	INTRON CG4050	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	6902193	3R_6902193_SNP [dm3] 3R_11076471_SNP [dm6]	A	G	1.618e^-4	0.851	INTERGENIC
3L	1302062	3L_1302062_SNP [dm3] 3L_1302062_SNP [dm6]	G	T	1.621e^-4	0.851	SYNONYMOUS_CODING Rac1 UPSTREAM CG9149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9554018	3L_9554018_SNP [dm3] 3L_9560918_SNP [dm6]	A	T	1.628e^-4	0.853	INTRON CG42673
2R	18109209	2R_18109209_SNP [dm3] 2R_22221704_SNP [dm6]	G	A	1.659e^-4	0.862	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
2L	4904988	2L_4904988_SNP [dm3] 2L_4904988_SNP [dm6]	G	A	1.665e^-4	0.862	INTRON CG2837
3L	14214969	3L_14214969_INS [dm3] 3L_14221869_INS [dm6]	T	TAT	1.667e^-4	0.862	INTRON nuf
2R	16563499	2R_16563499_SNP [dm3] 2R_20675994_SNP [dm6]	T	A	1.675e^-4	0.862	INTERGENIC
2R	18101608	2R_18101608_SNP [dm3] 2R_22214103_SNP [dm6]	A	T	1.699e^-4	0.862	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3508779	2L_3508779_SNP [dm3] 2L_3508779_SNP [dm6]	G	C	1.701e^-4	0.862	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2L	17183666	2L_17183666_SNP [dm3] 2L_17183666_SNP [dm6]	C	A	1.706e^-4	0.862	DOWNSTREAM CG31750 INTERGENIC
2L	9726580	2L_9726580_SNP [dm3] 2L_9726580_SNP [dm6]	T	G	1.711e^-4	0.862	INTRON Nckx30C
3L	1140309	3L_1140309_SNP [dm3] 3L_1140309_SNP [dm6]	A	G	1.716e^-4	0.862	DOWNSTREAM bab2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1140569	3L_1140569_SNP [dm3] 3L_1140569_SNP [dm6]	A	C	1.716e^-4	0.862	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19310451	3R_19310451_SNP [dm3] 3R_23484729_SNP [dm6]	G	A	1.720e^-4	0.862	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9148659	2R_9148659_SNP [dm3] 2R_13261154_SNP [dm6]	A	T	1.722e^-4	0.862	INTRON CG42319
3L	11240611	3L_11240611_DEL [dm3] 3L_11247511_DEL [dm6]	ACGTA	A	1.729e^-4	0.862	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3826884	X_3826884_SNP [dm3] X_3932851_SNP [dm6]	C	T	1.742e^-4	0.862	UTR_3_PRIME CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.742e^-4	0.862	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	1033162	3L_1033162_SNP [dm3] 3L_1033162_SNP [dm6]	G	T	1.743e^-4	0.862	INTRON trio	TF binding site BDTNP1_TFBS_dl
3R	13971795	3R_13971795_SNP [dm3] 3R_18146073_SNP [dm6]	T	A	1.747e^-4	0.862	INTERGENIC
2R	14458441	2R_14458441_SNP [dm3] 2R_18570936_SNP [dm6]	G	A	1.750e^-4	0.862	INTRON GEFmeso
3R	23909372	3R_23909372_SNP [dm3] 3R_28083650_SNP [dm6]	G	T	1.756e^-4	0.862	INTRON CG34362
2R	13271531	2R_13271531_SNP [dm3] 2R_17384026_SNP [dm6]	A	C	1.756e^-4	0.862	INTERGENIC
2L	13439507	2L_13439507_SNP [dm3] 2L_13439507_SNP [dm6]	A	T	1.756e^-4	0.862	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
2L	904958	2L_904958_SNP [dm3] 2L_904958_SNP [dm6]	G	A	1.758e^-4	0.862	DOWNSTREAM CR45261 INTERGENIC
X	1982631	X_1982631_SNP [dm3] X_2088598_SNP [dm6]	C	A	1.761e^-4	0.862	UPSTREAM Unc-76 INTRON Unc-76
3L	3795280	3L_3795280_SNP [dm3] 3L_3795280_SNP [dm6]	T	A	1.764e^-4	0.862	UPSTREAM CG32264 INTRON CG32264
3R	26269614	3R_26269614_SNP [dm3] 3R_30443892_SNP [dm6]	C	T	1.765e^-4	0.862	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3L	16996757	3L_16996757_SNP [dm3] 3L_17003657_SNP [dm6]	G	A	1.767e^-4	0.862	INTRON CG3764
3L	15900836	3L_15900836_SNP [dm3] 3L_15907736_SNP [dm6]	C	A	1.793e^-4	0.872	INTRON sff
3L	1928241	3L_1928241_SNP [dm3] 3L_1928241_SNP [dm6]	G	T	1.802e^-4	0.872	INTRON Dbx	TF binding site mE1_TFBS_chinmo
3L	1140886	3L_1140886_SNP [dm3] 3L_1140886_SNP [dm6]	A	T	1.806e^-4	0.872	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi
2R	8164391	2R_8164391_SNP [dm3] 2R_12276886_SNP [dm6]	A	T	1.807e^-4	0.872	UTR_3_PRIME Cam DOWNSTREAM Cam
X	8697655	X_8697655_SNP [dm3] X_8803622_SNP [dm6]	T	C	1.810e^-4	0.872	INTRON Lim1
3L	1476844	3L_1476844_SNP [dm3] 3L_1476844_SNP [dm6]	C	A	1.819e^-4	0.874	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
3R	13385592	3R_13385592_SNP [dm3] 3R_17559870_SNP [dm6]	G	T	1.827e^-4	0.874	NON_SYNONYMOUS_CODING Hmx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4245803	2R_4245803_SNP [dm3] 2R_8358298_SNP [dm6]	A	G	1.831e^-4	0.874	UPSTREAM CG11635 INTRON pdm3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8639391	3L_8639391_SNP [dm3] 3L_8646291_SNP [dm6]	T	C	1.837e^-4	0.874	SYNONYMOUS_CODING CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9182279	3L_9182279_SNP [dm3] 3L_9189179_SNP [dm6]	C	A	1.842e^-4	0.874	INTERGENIC
2R	15895298	2R_15895298_INS [dm3] 2R_20007793_INS [dm6]	T	TGT	1.847e^-4	0.874	DOWNSTREAM CR44628 INTERGENIC
X	7518149	X_7518149_SNP [dm3] X_7624116_SNP [dm6]	C	A	1.856e^-4	0.874	INTRON ct
2R	17474364	2R_17474364_SNP [dm3] 2R_21586859_SNP [dm6]	T	C	1.862e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19148676	2R_19148676_SNP [dm3] 2R_23261153_SNP [dm6]	T	C	1.863e^-4	0.874	INTERGENIC
3R	25440010	3R_25440010_SNP [dm3] 3R_29614288_SNP [dm6]	C	A	1.871e^-4	0.874	INTRON alph
3R	14470081	3R_14470081_SNP [dm3] 3R_18644359_SNP [dm6]	G	C	1.878e^-4	0.874	INTRON qin
2R	15225760	2R_15225760_SNP [dm3] 2R_19338255_SNP [dm6]	T	G	1.884e^-4	0.874	INTRON Rgk1
2R	1098616	2R_1098616_SNP [dm3] 2R_5211111_SNP [dm6]	A	G	1.885e^-4	0.874	INTRON Nipped-A
3R	21023037	3R_21023037_SNP [dm3] 3R_25197315_SNP [dm6]	G	A	1.888e^-4	0.874	DOWNSTREAM CG13653 & 1 other INTERGENIC
2L	10521984	2L_10521984_SNP [dm3] 2L_10521984_SNP [dm6]	A	G	1.892e^-4	0.874	INTERGENIC
2L	10173123	2L_10173123_SNP [dm3] 2L_10173123_SNP [dm6]	G	A	1.897e^-4	0.874	SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22167517	3R_22167517_SNP [dm3] 3R_26341795_SNP [dm6]	G	A	1.899e^-4	0.874	INTRON CG33970
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	1.940e^-4	0.874	INTRON sff
2R	11207459	2R_11207459_SNP [dm3] 2R_15319954_SNP [dm6]	C	T	1.943e^-4	0.874	SYNONYMOUS_CODING CG8155
X	1963908	X_1963908_SNP [dm3] X_2069875_SNP [dm6]	C	A	1.950e^-4	0.874	DOWNSTREAM CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_Trl
2L	8049735	2L_8049735_SNP [dm3] 2L_8049735_SNP [dm6]	T	A	1.953e^-4	0.874	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
2R	14090141	2R_14090141_SNP [dm3] 2R_18202636_SNP [dm6]	A	C	1.954e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20851188	3L_20851188_SNP [dm3] 3L_20858088_SNP [dm6]	G	A	1.957e^-4	0.874	INTRON CG32432
2R	16309959	2R_16309959_SNP [dm3] 2R_20422454_SNP [dm6]	G	C	1.959e^-4	0.874	INTERGENIC
3L	10750292	3L_10750292_SNP [dm3] 3L_10757192_SNP [dm6]	C	G	1.969e^-4	0.874	INTERGENIC
2R	18494841	2R_18494841_SNP [dm3] 2R_22607336_SNP [dm6]	T	G	1.975e^-4	0.874	UPSTREAM snoRNA:Psi28S-1175c & 2 others DOWNSTREAM snoRNA:Me28S-G2173 & 1 other INTRON RpS16 EXON snoRNA:Psi28S-1175b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	14298993	X_14298993_SNP [dm3] X_14404960_SNP [dm6]	T	A	1.977e^-4	0.874	INTRON dpr8
2R	13271528	2R_13271528_SNP [dm3] 2R_17384023_SNP [dm6]	T	A	1.983e^-4	0.874	INTERGENIC
3L	6927719	3L_6927719_SNP [dm3] 3L_6934619_SNP [dm6]	C	T	1.989e^-4	0.874	SYNONYMOUS_CODING CG14820 DOWNSTREAM CR45415
2R	4637431	2R_4637431_SNP [dm3] 2R_8749926_SNP [dm6]	C	T	1.995e^-4	0.874	INTRON CG8740
3L	1824292	3L_1824292_SNP [dm3] 3L_1824292_SNP [dm6]	T	C	1.998e^-4	0.874	UTR_3_PRIME Cpr62Ba
3R	21265682	3R_21265682_SNP [dm3] 3R_25439960_SNP [dm6]	T	A	1.999e^-4	0.874	INTRON Fur1
2R	17571850	2R_17571850_SNP [dm3] 2R_21684345_SNP [dm6]	C	T	2.001e^-4	0.874	SYNONYMOUS_CODING CG30263 UPSTREAM CG10306	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22172358	3R_22172358_SNP [dm3] 3R_26346636_SNP [dm6]	T	G	2.020e^-4	0.874	INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20723084	X_20723084_SNP [dm3] X_20852057_SNP [dm6]	G	T	2.025e^-4	0.874	INTRON shakB
3R	18541919	3R_18541919_SNP [dm3] 3R_22716197_SNP [dm6]	T	G	2.025e^-4	0.874	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1099732	2R_1099732_SNP [dm3] 2R_5212227_SNP [dm6]	G	C	2.026e^-4	0.874	INTRON Nipped-A
2R	6845125	2R_6845125_DEL [dm3] 2R_10957620_DEL [dm6]	AA	A	2.030e^-4	0.874	INTERGENIC
X	5231742	X_5231742_DEL [dm3] X_5337709_DEL [dm6]	TGT	T	2.039e^-4	0.874	INTERGENIC
3L	1000440	3L_1000440_SNP [dm3] 3L_1000440_SNP [dm6]	C	G	2.040e^-4	0.874	UTR_5_PRIME trio INTRON trio
3L	1465235	3L_1465235_SNP [dm3] 3L_1465235_SNP [dm6]	C	T	2.051e^-4	0.874	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
X	4568068	X_4568068_SNP [dm3] X_4674035_SNP [dm6]	T	G	2.056e^-4	0.874	INTRON rap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9345001	2L_9345001_SNP [dm3] 2L_9345001_SNP [dm6]	C	A	2.056e^-4	0.874	DOWNSTREAM CG3748 INTERGENIC
3R	10716947	3R_10716947_SNP [dm3] 3R_14891225_SNP [dm6]	T	G	2.063e^-4	0.874	SYNONYMOUS_CODING CG3731	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	9133435	X_9133435_SNP [dm3] X_9239402_SNP [dm6]	A	T	2.070e^-4	0.874	NON_SYNONYMOUS_CODING mxc
X	15357163	X_15357163_SNP [dm3] X_15463130_SNP [dm6]	A	T	2.074e^-4	0.874	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8963144	2L_8963144_SNP [dm3] 2L_8963144_SNP [dm6]	A	C	2.087e^-4	0.874	SYNONYMOUS_CODING CG32985 UPSTREAM CG9525
3R	22807253	3R_22807253_SNP [dm3] 3R_26981531_SNP [dm6]	A	T	2.092e^-4	0.874	SPLICE_SITE_ACCEPTOR CG14253 START_GAINED CG14253 UTR_5_PRIME CG14253 INTRON CG14253
3R	25288616	3R_25288616_SNP [dm3] 3R_29462894_SNP [dm6]	C	T	2.092e^-4	0.874	INTRON Ptp99A
3L	4776832	3L_4776832_SNP [dm3] 3L_4776832_SNP [dm6]	A	T	2.093e^-4	0.874	INTRON RhoGEF64C
3L	11298170	3L_11298170_SNP [dm3] 3L_11305070_SNP [dm6]	T	G	2.102e^-4	0.874	INTERGENIC
2L	1847923	2L_1847923_SNP [dm3] 2L_1847923_SNP [dm6]	T	A	2.107e^-4	0.874	INTRON wry
X	19324186	X_19324186_SNP [dm3] X_19430153_SNP [dm6]	G	C	2.108e^-4	0.874	INTRON kek5
X	7731882	X_7731882_SNP [dm3] X_7837849_SNP [dm6]	C	A	2.116e^-4	0.874	INTRON CG1402
2R	1099793	2R_1099793_INS [dm3] 2R_5212288_INS [dm6]	T	TT	2.119e^-4	0.874	INTRON Nipped-A
3R	27135131	3R_27135131_SNP [dm3] 3R_31309409_SNP [dm6]	C	A	2.119e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19156374	2R_19156374_SNP [dm3] 2R_23268851_SNP [dm6]	A	T	2.120e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19924361	3R_19924361_SNP [dm3] 3R_24098639_SNP [dm6]	G	A	2.120e^-4	0.874	INTRON 4EHP
3R	22796399	3R_22796399_SNP [dm3] 3R_26970677_SNP [dm6]	G	C	2.123e^-4	0.874	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
2L	6448625	2L_6448625_SNP [dm3] 2L_6448625_SNP [dm6]	T	C	2.126e^-4	0.874	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
3L	8119682	3L_8119682_SNP [dm3] 3L_8126582_SNP [dm6]	G	A	2.126e^-4	0.874	SYNONYMOUS_CODING Uba2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15287338	2R_15287338_SNP [dm3] 2R_19399833_SNP [dm6]	A	G	2.131e^-4	0.874	UTR_3_PRIME hts INTRON hts EXON CR43430
X	8389648	X_8389648_SNP [dm3] X_8495615_SNP [dm6]	T	G	2.133e^-4	0.874	INTRON CG33181
3R	5466619	3R_5466619_SNP [dm3] 3R_9640897_SNP [dm6]	G	T	2.144e^-4	0.874	INTRON Dh44
2R	11548634	2R_11548634_SNP [dm3] 2R_15661129_SNP [dm6]	G	A	2.148e^-4	0.874	UTR_3_PRIME fus INTRON fus	TF binding site mE1_TFBS_inv
X	19330143	X_19330143_DEL [dm3] X_19436110_DEL [dm6]	TT	T	2.150e^-4	0.874	INTRON kek5
X	9962661	X_9962661_SNP [dm3] X_10068628_SNP [dm6]	A	G	2.153e^-4	0.874	INTRON CG15312	TF binding site mE1_TFBS_inv
2L	903183	2L_903183_SNP [dm3] 2L_903183_SNP [dm6]	A	G	2.154e^-4	0.874	UPSTREAM CR45261 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17644345	2L_17644345_SNP [dm3] 2L_17644345_SNP [dm6]	A	G	2.157e^-4	0.874	DOWNSTREAM CR45699 INTERGENIC
3L	20172161	3L_20172161_SNP [dm3] 3L_20179061_SNP [dm6]	A	G	2.160e^-4	0.874	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13102371	3R_13102371_SNP [dm3] 3R_17276649_SNP [dm6]	G	C	2.162e^-4	0.874	INTERGENIC
X	12661106	X_12661106_SNP [dm3] X_12767073_SNP [dm6]	C	A	2.168e^-4	0.874	UTR_5_PRIME CG3812	TF binding site mE1_TFBS_bab1
2R	14226058	2R_14226058_SNP [dm3] 2R_18338553_SNP [dm6]	C	G	2.181e^-4	0.874	INTRON sbb	TF binding site BDTNP1_TFBS_dl
3R	21027963	3R_21027963_SNP [dm3] 3R_25202241_SNP [dm6]	G	T	2.185e^-4	0.874	INTRON CG13654 & 1 other
3R	18541902	3R_18541902_SNP [dm3] 3R_22716180_SNP [dm6]	A	G	2.186e^-4	0.874	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9313494	3L_9313494_SNP [dm3] 3L_9320394_SNP [dm6]	C	G	2.190e^-4	0.874	INTERGENIC
2L	4281093	2L_4281093_SNP [dm3] 2L_4281093_SNP [dm6]	A	T	2.192e^-4	0.874	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6448628	2L_6448628_SNP [dm3] 2L_6448628_SNP [dm6]	C	T	2.193e^-4	0.874	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
2L	9726581	2L_9726581_SNP [dm3] 2L_9726581_SNP [dm6]	T	G	2.202e^-4	0.874	INTRON Nckx30C
2L	11246556	2L_11246556_SNP [dm3] 2L_11246556_SNP [dm6]	G	T	2.203e^-4	0.874	INTRON ab	TF binding site mE1_TFBS_chinmo
2R	15053610	2R_15053610_SNP [dm3] 2R_19166105_SNP [dm6]	A	C	2.206e^-4	0.874	INTRON CG10737
3L	3308633	3L_3308633_SNP [dm3] 3L_3308633_SNP [dm6]	C	T	2.208e^-4	0.874	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	4937165	X_4937165_SNP [dm3] X_5043132_SNP [dm6]	C	T	2.223e^-4	0.874	INTRON CR44833	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13915656	3R_13915656_DEL [dm3] 3R_18089934_DEL [dm6]	ATTGA	A	2.224e^-4	0.874	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27515102	3R_27515102_SNP [dm3] 3R_31689380_SNP [dm6]	G	T	2.236e^-4	0.874	UPSTREAM CR45564 EXON CR45565	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	13108667	3R_13108667_SNP [dm3] 3R_17282945_SNP [dm6]	G	T	2.244e^-4	0.874	UPSTREAM CG31418 INTERGENIC
2R	17846041	2R_17846041_SNP [dm3] 2R_21958536_SNP [dm6]	A	T	2.246e^-4	0.874	INTERGENIC
3R	24469790	3R_24469790_SNP [dm3] 3R_28644068_SNP [dm6]	A	G	2.247e^-4	0.874	INTERGENIC
2R	13109053	2R_13109053_SNP [dm3] 2R_17221548_SNP [dm6]	T	C	2.247e^-4	0.874	INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12046358	3L_12046358_SNP [dm3] 3L_12053258_SNP [dm6]	C	A	2.250e^-4	0.874	INTRON rols
3R	9116213	3R_9116213_SNP [dm3] 3R_13290491_SNP [dm6]	A	T	2.254e^-4	0.874	UPSTREAM Osi22 INTERGENIC
X	5815204	X_5815204_SNP [dm3] X_5921171_SNP [dm6]	C	T	2.256e^-4	0.874	INTRON CG3726
2R	19032635	2R_19032635_SNP [dm3] 2R_23145112_SNP [dm6]	C	T	2.262e^-4	0.874	DOWNSTREAM Klp59D INTERGENIC
3L	15471918	3L_15471918_INS [dm3] 3L_15478818_INS [dm6]	A	TC	2.264e^-4	0.874	INTERGENIC
3L	21854585	3L_21854585_SNP [dm3] 3L_21861485_SNP [dm6]	A	C	2.272e^-4	0.874	INTRON mub
3R	19388570	3R_19388570_SNP [dm3] 3R_23562848_SNP [dm6]	C	A	2.273e^-4	0.874	INTRON beat-IV	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	17861309	X_17861309_SNP [dm3] X_17967276_SNP [dm6]	C	T	2.286e^-4	0.874	UPSTREAM Sh INTRON Sh
3L	20928693	3L_20928693_SNP [dm3] 3L_20935593_SNP [dm6]	A	G	2.290e^-4	0.874	INTRON fng
X	5234439	X_5234439_SNP [dm3] X_5340406_SNP [dm6]	G	A	2.294e^-4	0.874	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7266101	2R_7266101_SNP [dm3] 2R_11378596_SNP [dm6]	T	C	2.297e^-4	0.874	INTRON Tsp47F
3L	10764347	3L_10764347_SNP [dm3] 3L_10771247_SNP [dm6]	T	C	2.299e^-4	0.874	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	21223003	3L_21223003_SNP [dm3] 3L_21229903_SNP [dm6]	T	C	2.303e^-4	0.874	INTRON Eip78C
3R	22169977	3R_22169977_SNP [dm3] 3R_26344255_SNP [dm6]	G	A	2.304e^-4	0.874	DOWNSTREAM CG6036 INTRON CG33970
X	12222594	X_12222594_SNP [dm3] X_12328561_SNP [dm6]	G	C	2.308e^-4	0.874	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2R	11245345	2R_11245345_SNP [dm3] 2R_15357840_SNP [dm6]	A	T	2.309e^-4	0.874	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	14133377	X_14133377_SNP [dm3] X_14239344_SNP [dm6]	C	T	2.323e^-4	0.874	SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4732375	X_4732375_SNP [dm3] X_4838342_SNP [dm6]	A	T	2.340e^-4	0.874	INTERGENIC
2R	16565296	2R_16565296_SNP [dm3] 2R_20677791_SNP [dm6]	G	C	2.346e^-4	0.874	INTERGENIC
3R	25116810	3R_25116810_SNP [dm3] 3R_29291088_SNP [dm6]	A	T	2.347e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15899462	3L_15899462_SNP [dm3] 3L_15906362_SNP [dm6]	G	C	2.355e^-4	0.874	INTRON sff
2L	11255854	2L_11255854_SNP [dm3] 2L_11255854_SNP [dm6]	A	G	2.358e^-4	0.874	SYNONYMOUS_CODING ab INTRON ab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8870482	2R_8870482_SNP [dm3] 2R_12982977_SNP [dm6]	G	T	2.361e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1463302	3L_1463302_SNP [dm3] 3L_1463302_SNP [dm6]	A	G	2.362e^-4	0.874	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7385481	2R_7385481_DEL [dm3] 2R_11497976_DEL [dm6]	AT	A	2.365e^-4	0.874	INTRON inv
2R	18109337	2R_18109337_SNP [dm3] 2R_22221832_SNP [dm6]	G	A	2.369e^-4	0.874	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
3L	10155586	3L_10155586_SNP [dm3] 3L_10162486_SNP [dm6]	G	T	2.375e^-4	0.874	INTRON dpr10
2R	12894943	2R_12894943_SNP [dm3] 2R_17007438_SNP [dm6]	C	T	2.381e^-4	0.874	UTR_3_PRIME CG6805 DOWNSTREAM Ehbp1
3R	25426391	3R_25426391_SNP [dm3] 3R_29600669_SNP [dm6]	C	T	2.383e^-4	0.874	INTRON alph & 1 other	TF binding site mE1_TFBS_sens
3L	1367900	3L_1367900_DEL [dm3] 3L_1367900_DEL [dm6]	ATGCCTATA	A	2.392e^-4	0.874	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10377532	2L_10377532_SNP [dm3] 2L_10377532_SNP [dm6]	T	A	2.392e^-4	0.874	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	4097894	2R_4097894_SNP [dm3] 2R_8210389_SNP [dm6]	C	A	2.392e^-4	0.874	INTRON LRP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22795599	3R_22795599_MNP [dm3] 3R_26969877_MNP [dm6]	TTT	CAG	2.393e^-4	0.874	INTRON CG5521
3L	9182545	3L_9182545_SNP [dm3] 3L_9189445_SNP [dm6]	C	T	2.398e^-4	0.874	INTERGENIC
2L	9187056	2L_9187056_SNP [dm3] 2L_9187056_SNP [dm6]	C	A	2.398e^-4	0.874	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22807216	3R_22807216_SNP [dm3] 3R_26981494_SNP [dm6]	C	T	2.401e^-4	0.874	INTRON CG14253
2L	5441987	2L_5441987_SNP [dm3] 2L_5441987_SNP [dm6]	T	C	2.408e^-4	0.874	INTERGENIC
3L	12046080	3L_12046080_SNP [dm3] 3L_12052980_SNP [dm6]	C	A	2.423e^-4	0.874	INTRON rols
2R	1096512	2R_1096512_SNP [dm3] 2R_5209007_SNP [dm6]	A	T	2.427e^-4	0.874	INTRON Nipped-A	transposable element FlyBase
2L	6448627	2L_6448627_SNP [dm3] 2L_6448627_SNP [dm6]	T	C	2.427e^-4	0.874	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
2L	2740294	2L_2740294_SNP [dm3] 2L_2740294_SNP [dm6]	C	A	2.431e^-4	0.874	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	11304765	2R_11304765_SNP [dm3] 2R_15417260_SNP [dm6]	T	C	2.438e^-4	0.874	INTRON CG43729
3L	8899536	3L_8899536_SNP [dm3] 3L_8906436_SNP [dm6]	G	A	2.442e^-4	0.874	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
3L	7892550	3L_7892550_DEL [dm3] 3L_7899450_DEL [dm6]	GTTTTGTGTGTG...	G	2.443e^-4	0.874	UPSTREAM pbl INTRON pbl
3L	5248000	3L_5248000_SNP [dm3] 3L_5254900_SNP [dm6]	G	T	2.446e^-4	0.874	INTRON shep
3R	14972074	3R_14972074_SNP [dm3] 3R_19146352_SNP [dm6]	T	G	2.446e^-4	0.874	INTRON Ppcs
2L	17094600	2L_17094600_SNP [dm3] 2L_17094600_SNP [dm6]	T	G	2.449e^-4	0.874	INTERGENIC
2L	12512283	2L_12512283_SNP [dm3] 2L_12512283_SNP [dm6]	T	A	2.465e^-4	0.874	INTRON bun
3L	2542536	3L_2542536_SNP [dm3] 3L_2542536_SNP [dm6]	A	G	2.477e^-4	0.874	INTRON Spn	TF binding site mE1_TFBS_cad
3L	17559829	3L_17559829_SNP [dm3] 3L_17566729_SNP [dm6]	G	A	2.478e^-4	0.874	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10612283	3L_10612283_SNP [dm3] 3L_10619183_SNP [dm6]	C	T	2.479e^-4	0.874	INTERGENIC
2R	15094265	2R_15094265_SNP [dm3] 2R_19206760_SNP [dm6]	G	C	2.486e^-4	0.874	INTRON hppy
2L	17672657	2L_17672657_SNP [dm3] 2L_17672657_SNP [dm6]	A	G	2.501e^-4	0.874	INTRON CadN
3L	15237191	3L_15237191_SNP [dm3] 3L_15244091_SNP [dm6]	C	G	2.503e^-4	0.874	INTERGENIC
X	8354787	X_8354787_SNP [dm3] X_8460754_SNP [dm6]	T	A	2.511e^-4	0.874	UPSTREAM Es2 INTRON CG15347
3L	15899108	3L_15899108_SNP [dm3] 3L_15906008_SNP [dm6]	T	C	2.528e^-4	0.874	SYNONYMOUS_CODING sff
X	6816363	X_6816363_SNP [dm3] X_6922330_SNP [dm6]	C	T	2.530e^-4	0.874	INTRON CG14431
X	8702539	X_8702539_SNP [dm3] X_8808506_SNP [dm6]	C	T	2.535e^-4	0.874	INTERGENIC
3R	16036480	3R_16036480_SNP [dm3] 3R_20210758_SNP [dm6]	C	G	2.536e^-4	0.874	UPSTREAM CG17199 INTRON Nlg4
3L	23146999	3L_23146999_SNP [dm3] 3L_23153899_SNP [dm6]	T	A	2.547e^-4	0.874	INTERGENIC	transposable element FlyBase
3L	20172018	3L_20172018_SNP [dm3] 3L_20178918_SNP [dm6]	C	T	2.562e^-4	0.874	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8323241	3L_8323241_SNP [dm3] 3L_8330141_SNP [dm6]	C	T	2.563e^-4	0.874	UTR_3_PRIME CG34462
3R	25440013	3R_25440013_SNP [dm3] 3R_29614291_SNP [dm6]	G	T	2.565e^-4	0.874	INTRON alph
2L	10920486	2L_10920486_SNP [dm3] 2L_10920486_SNP [dm6]	T	C	2.574e^-4	0.874	INTRON dpr2
3R	19817860	3R_19817860_SNP [dm3] 3R_23992138_SNP [dm6]	A	G	2.575e^-4	0.874	SYNONYMOUS_CODING CG13604 UPSTREAM CG13604 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9878085	3R_9878085_SNP [dm3] 3R_14052363_SNP [dm6]	A	T	2.583e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21864137	3R_21864137_SNP [dm3] 3R_26038415_SNP [dm6]	A	T	2.587e^-4	0.874	DOWNSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	20598136	3R_20598136_SNP [dm3] 3R_24772414_SNP [dm6]	A	T	2.589e^-4	0.874	INTRON CG42331
3R	16015036	3R_16015036_SNP [dm3] 3R_20189314_SNP [dm6]	A	G	2.590e^-4	0.874	INTERGENIC
2L	6448599	2L_6448599_SNP [dm3] 2L_6448599_SNP [dm6]	A	C	2.603e^-4	0.874	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad
2L	17094592	2L_17094592_SNP [dm3] 2L_17094592_SNP [dm6]	C	G	2.603e^-4	0.874	INTERGENIC
2R	16309011	2R_16309011_SNP [dm3] 2R_20421506_SNP [dm6]	C	T	2.604e^-4	0.874	INTERGENIC
2R	15228543	2R_15228543_SNP [dm3] 2R_19341038_SNP [dm6]	T	A	2.605e^-4	0.874	UPSTREAM CG9975 INTRON Rgk1
3R	14849959	3R_14849959_SNP [dm3] 3R_19024237_SNP [dm6]	T	C	2.606e^-4	0.874	NON_SYNONYMOUS_CODING CG14286 UPSTREAM CG6005 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5303289	X_5303289_SNP [dm3] X_5409256_SNP [dm6]	T	C	2.610e^-4	0.874	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
X	5401790	X_5401790_SNP [dm3] X_5507757_SNP [dm6]	C	A	2.611e^-4	0.874	DOWNSTREAM CR45519 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18654240	2L_18654240_SNP [dm3] 2L_18654240_SNP [dm6]	C	A	2.618e^-4	0.874	INTRON MESR3	TF binding site mE1_TFBS_cnc
2L	18404374	2L_18404374_SNP [dm3] 2L_18404374_SNP [dm6]	A	G	2.618e^-4	0.874	EXON CR44487
2L	18406089	2L_18406089_SNP [dm3] 2L_18406089_SNP [dm6]	A	C	2.634e^-4	0.874	INTERGENIC
2L	6448613	2L_6448613_SNP [dm3] 2L_6448613_SNP [dm6]	C	T	2.635e^-4	0.874	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_kn
X	2556248	X_2556248_DEL [dm3] X_2662215_DEL [dm6]	CATCCATCGGGATCCAGTTA...	AGGGGTAGTAG...	2.636e^-4	0.874	INTRON sgg
3L	5245239	3L_5245239_SNP [dm3] 3L_5252139_SNP [dm6]	T	A	2.636e^-4	0.874	INTRON shep
X	12963115	X_12963115_SNP [dm3] X_13069082_SNP [dm6]	C	A	2.643e^-4	0.874	INTRON rad
2R	9676671	2R_9676671_SNP [dm3] 2R_13789166_SNP [dm6]	C	G	2.645e^-4	0.874	INTERGENIC
2L	8178289	2L_8178289_SNP [dm3] 2L_8178289_SNP [dm6]	T	C	2.647e^-4	0.874	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	904753	2L_904753_INS [dm3] 2L_904753_INS [dm6]	A	ACTA	2.647e^-4	0.874	DOWNSTREAM CR45261 INTERGENIC
3R	15963930	3R_15963930_SNP [dm3] 3R_20138208_SNP [dm6]	A	G	2.653e^-4	0.874	DOWNSTREAM CR42836 INTERGENIC
3R	13363764	3R_13363764_SNP [dm3] 3R_17538042_SNP [dm6]	A	G	2.657e^-4	0.874	SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20401508	2L_20401508_SNP [dm3] 2L_20401508_SNP [dm6]	G	T	2.660e^-4	0.874	INTRON CG10947
2L	12746563	2L_12746563_SNP [dm3] 2L_12746563_SNP [dm6]	T	G	2.663e^-4	0.874	INTERGENIC
2R	17739704	2R_17739704_SNP [dm3] 2R_21852199_SNP [dm6]	A	G	2.674e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14125923	2R_14125923_SNP [dm3] 2R_18238418_SNP [dm6]	C	T	2.678e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17094587	2L_17094587_SNP [dm3] 2L_17094587_SNP [dm6]	G	A	2.680e^-4	0.874	INTERGENIC
3L	10803236	3L_10803236_SNP [dm3] 3L_10810136_SNP [dm6]	G	A	2.687e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14111029	2L_14111029_SNP [dm3] 2L_14111029_SNP [dm6]	G	A	2.688e^-4	0.874	UPSTREAM CG31769 INTERGENIC
2L	3525655	2L_3525655_SNP [dm3] 2L_3525655_SNP [dm6]	G	C	2.688e^-4	0.874	SYNONYMOUS_CODING CG8852	TF binding site mE1_TFBS_HSA
X	14606856	X_14606856_INS [dm3] X_14712823_INS [dm6]	G	GGTGTTGTGGG...	2.690e^-4	0.874	INTRON NetB
2L	9578665	2L_9578665_SNP [dm3] 2L_9578665_SNP [dm6]	C	T	2.692e^-4	0.874	UTR_3_PRIME CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	16603717	X_16603717_SNP [dm3] X_16709684_SNP [dm6]	A	G	2.694e^-4	0.874	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2686036	2R_2686036_SNP [dm3] 2R_6798531_SNP [dm6]	T	C	2.697e^-4	0.874	INTRON Epac
2R	17014686	2R_17014686_SNP [dm3] 2R_21127181_SNP [dm6]	G	A	2.702e^-4	0.874	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	14089809	2R_14089809_SNP [dm3] 2R_18202304_SNP [dm6]	A	T	2.709e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19310187	3R_19310187_SNP [dm3] 3R_23484465_SNP [dm6]	A	C	2.710e^-4	0.874	SYNONYMOUS_CODING Ir94g DOWNSTREAM Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14509033	2R_14509033_SNP [dm3] 2R_18621528_SNP [dm6]	G	A	2.716e^-4	0.874	UPSTREAM CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
3R	23783282	3R_23783282_SNP [dm3] 3R_27957560_SNP [dm6]	A	G	2.722e^-4	0.874	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11715538	3R_11715538_SNP [dm3] 3R_15889816_SNP [dm6]	A	G	2.747e^-4	0.874	SYNONYMOUS_CODING CG14877
2R	17928345	2R_17928345_SNP [dm3] 2R_22040840_SNP [dm6]	A	G	2.755e^-4	0.874	DOWNSTREAM PpD5 INTERGENIC
2R	16590878	2R_16590878_SNP [dm3] 2R_20703373_SNP [dm6]	G	C	2.756e^-4	0.874	INTRON dpr
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	2.756e^-4	0.874	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
2R	5605924	2R_5605924_SNP [dm3] 2R_9718419_SNP [dm6]	G	T	2.764e^-4	0.874	DOWNSTREAM sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi
3L	12046370	3L_12046370_SNP [dm3] 3L_12053270_SNP [dm6]	G	A	2.765e^-4	0.874	INTRON rols
2L	19585745	2L_19585745_SNP [dm3] 2L_19585745_SNP [dm6]	A	T	2.768e^-4	0.874	SYNONYMOUS_CODING CG10366 UPSTREAM Lar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14089811	2R_14089811_SNP [dm3] 2R_18202306_SNP [dm6]	T	C	2.770e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16309012	2R_16309012_DEL [dm3] 2R_20421507_DEL [dm6]	CACATACAGAACTA...	C	2.779e^-4	0.874	INTERGENIC
2R	1092833	2R_1092833_SNP [dm3] 2R_5205328_SNP [dm6]	T	C	2.785e^-4	0.874	INTRON Nipped-A	TF binding site mE1_TFBS_sens
2R	10217741	2R_10217741_SNP [dm3] 2R_14330236_SNP [dm6]	C	T	2.786e^-4	0.874	INTRON Shroom
2R	9796478	2R_9796478_SNP [dm3] 2R_13908973_SNP [dm6]	A	G	2.786e^-4	0.874	INTRON shot
2R	10889267	2R_10889267_SNP [dm3] 2R_15001762_SNP [dm6]	T	A	2.786e^-4	0.874	INTERGENIC
X	17621639	X_17621639_DEL [dm3] X_17727606_DEL [dm6]	ACATGGATATGGTGGCAAT...	A	2.789e^-4	0.874	INTRON CG42684
3R	26283157	3R_26283157_SNP [dm3] 3R_30457435_SNP [dm6]	A	G	2.789e^-4	0.874	INTRON CG2224
3R	19697805	3R_19697805_SNP [dm3] 3R_23872083_SNP [dm6]	G	C	2.792e^-4	0.874	INTRON Pli
2L	7518867	2L_7518867_DEL [dm3] 2L_7518867_DEL [dm6]	TT	A	2.810e^-4	0.876	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	10787549	X_10787549_SNP [dm3] X_10893516_SNP [dm6]	G	A	2.812e^-4	0.876	DOWNSTREAM CR45617 EXON CR44524
2L	5625077	2L_5625077_SNP [dm3] 2L_5625077_SNP [dm6]	T	C	2.815e^-4	0.876	INTERGENIC
2R	1372000	2R_1372000_SNP [dm3] 2R_5484495_SNP [dm6]	T	G	2.832e^-4	0.878	SYNONYMOUS_CODING CG30440
3L	22155823	3L_22155823_SNP [dm3] 3L_22162723_SNP [dm6]	C	T	2.837e^-4	0.878	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12100872	3L_12100872_SNP [dm3] 3L_12107772_SNP [dm6]	A	G	2.839e^-4	0.878	INTERGENIC
X	8059602	X_8059602_SNP [dm3] X_8165569_SNP [dm6]	T	C	2.841e^-4	0.878	NON_SYNONYMOUS_CODING Or7a DOWNSTREAM CG2278	TF binding site mE1_TFBS_chinmo
2R	9135886	2R_9135886_INS [dm3] 2R_13248381_INS [dm6]	A	AT	2.851e^-4	0.878	DOWNSTREAM Mp20 & 1 other INTRON Mp20
3L	18060279	3L_18060279_DEL [dm3] 3L_18067179_DEL [dm6]	ACACTGCA	A	2.856e^-4	0.878	INTERGENIC
2R	2681125	2R_2681125_SNP [dm3] 2R_6793620_SNP [dm6]	C	T	2.862e^-4	0.878	INTRON Epac
3R	7368800	3R_7368800_SNP [dm3] 3R_11543078_SNP [dm6]	G	A	2.880e^-4	0.878	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14494991	2R_14494991_DEL [dm3] 2R_18607486_DEL [dm6]	CATAGCCCGCC...	C	2.897e^-4	0.878	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	12512296	2L_12512296_SNP [dm3] 2L_12512296_SNP [dm6]	G	T	2.897e^-4	0.878	INTRON bun
3L	10750176	3L_10750176_SNP [dm3] 3L_10757076_SNP [dm6]	T	C	2.899e^-4	0.878	INTERGENIC
3R	9248098	3R_9248098_SNP [dm3] 3R_13422376_SNP [dm6]	G	A	2.899e^-4	0.878	SYNONYMOUS_CODING Ir87a
3R	19310178	3R_19310178_SNP [dm3] 3R_23484456_SNP [dm6]	C	T	2.901e^-4	0.878	SYNONYMOUS_CODING Ir94g DOWNSTREAM Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1618322	3L_1618322_SNP [dm3] 3L_1618322_SNP [dm6]	T	A	2.914e^-4	0.878	UPSTREAM ABCB7 & 2 others DOWNSTREAM CG33791 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9726585	2L_9726585_SNP [dm3] 2L_9726585_SNP [dm6]	A	T	2.915e^-4	0.878	INTRON Nckx30C
2L	5877229	2L_5877229_SNP [dm3] 2L_5877229_SNP [dm6]	C	A	2.919e^-4	0.878	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22807296	3R_22807296_SNP [dm3] 3R_26981574_SNP [dm6]	A	T	2.919e^-4	0.878	UTR_5_PRIME CG14253 INTRON CG14253
3L	14423222	3L_14423222_SNP [dm3] 3L_14430122_SNP [dm6]	G	A	2.921e^-4	0.878	INTRON bbg
2R	5699567	2R_5699567_SNP [dm3] 2R_9812062_SNP [dm6]	C	T	2.924e^-4	0.878	INTRON CG1648
2R	9796482	2R_9796482_SNP [dm3] 2R_13908977_SNP [dm6]	A	G	2.940e^-4	0.878	INTRON shot
3L	10159757	3L_10159757_SNP [dm3] 3L_10166657_SNP [dm6]	C	T	2.940e^-4	0.878	SYNONYMOUS_CODING CG6628 INTRON dpr10
3L	5245238	3L_5245238_SNP [dm3] 3L_5252138_SNP [dm6]	A	C	2.943e^-4	0.878	INTRON shep
X	12291833	X_12291833_SNP [dm3] X_12397800_SNP [dm6]	C	G	2.944e^-4	0.878	INTERGENIC
3L	12499468	3L_12499468_SNP [dm3] 3L_12506368_SNP [dm6]	C	T	2.953e^-4	0.878	SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9137377	2R_9137377_SNP [dm3] 2R_13249872_SNP [dm6]	T	A	2.959e^-4	0.878	DOWNSTREAM Mp20 INTRON CG4712
3L	4246256	3L_4246256_SNP [dm3] 3L_4246256_SNP [dm6]	T	A	2.960e^-4	0.878	DOWNSTREAM ago & 1 other INTERGENIC
X	8708442	X_8708442_SNP [dm3] X_8814409_SNP [dm6]	C	A	2.963e^-4	0.878	INTERGENIC
3L	6927695	3L_6927695_SNP [dm3] 3L_6934595_SNP [dm6]	G	A	2.966e^-4	0.878	SYNONYMOUS_CODING CG14820
2L	21628641	2L_21628641_SNP [dm3] 2L_21628641_SNP [dm6]	G	C	2.968e^-4	0.878	INTRON Df31 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6805900	3R_6805900_SNP [dm3] 3R_10980178_SNP [dm6]	G	C	2.975e^-4	0.878	INTRON CG34114
X	14606553	X_14606553_SNP [dm3] X_14712520_SNP [dm6]	T	C	2.978e^-4	0.878	INTRON NetB
3R	22177017	3R_22177017_SNP [dm3] 3R_26351295_SNP [dm6]	T	C	2.984e^-4	0.878	INTRON CG33970
3L	10611722	3L_10611722_SNP [dm3] 3L_10618622_SNP [dm6]	C	A	2.999e^-4	0.878	INTERGENIC
3R	20486461	3R_20486461_SNP [dm3] 3R_24660739_SNP [dm6]	G	A	3.003e^-4	0.878	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5245142	3L_5245142_SNP [dm3] 3L_5252042_SNP [dm6]	A	T	3.004e^-4	0.878	INTRON shep
2R	14133952	2R_14133952_SNP [dm3] 2R_18246447_SNP [dm6]	G	T	3.004e^-4	0.878	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	14114725	3R_14114725_SNP [dm3] 3R_18289003_SNP [dm6]	C	A	3.009e^-4	0.878	UTR_3_PRIME l_3_05822 UPSTREAM CG7131	TF binding site mE1_TFBS_cad
2L	15738086	2L_15738086_SNP [dm3] 2L_15738086_SNP [dm6]	C	A	3.028e^-4	0.878	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6503754	3L_6503754_SNP [dm3] 3L_6510654_SNP [dm6]	C	T	3.031e^-4	0.878	INTRON sfl
2R	10368484	2R_10368484_SNP [dm3] 2R_14480979_SNP [dm6]	T	A	3.034e^-4	0.878	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4474404	2L_4474404_SNP [dm3] 2L_4474404_SNP [dm6]	C	T	3.042e^-4	0.878	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18134859	3R_18134859_SNP [dm3] 3R_22309137_SNP [dm6]	G	A	3.045e^-4	0.878	UTR_3_PRIME CG34377
3L	20965644	3L_20965644_SNP [dm3] 3L_20972544_SNP [dm6]	A	G	3.045e^-4	0.878	SYNONYMOUS_CODING CG33286
3R	14817825	3R_14817825_SNP [dm3] 3R_18992103_SNP [dm6]	G	T	3.056e^-4	0.878	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	20924423	3L_20924423_SNP [dm3] 3L_20931323_SNP [dm6]	G	A	3.061e^-4	0.878	INTRON fng	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26285832	3R_26285832_SNP [dm3] 3R_30460110_SNP [dm6]	T	C	3.064e^-4	0.878	UPSTREAM CG2224 & 1 other INTRON CDase
2L	16803350	2L_16803350_SNP [dm3] 2L_16803350_SNP [dm6]	A	G	3.064e^-4	0.878	SYNONYMOUS_CODING CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15476371	2R_15476371_SNP [dm3] 2R_19588866_SNP [dm6]	A	T	3.065e^-4	0.878	INTRON sm
2R	15287806	2R_15287806_SNP [dm3] 2R_19400301_SNP [dm6]	C	T	3.075e^-4	0.878	SYNONYMOUS_CODING hts INTRON hts EXON CR43430	TF binding site mE1_TFBS_sens
2L	3610822	2L_3610822_SNP [dm3] 2L_3610822_SNP [dm6]	C	A	3.092e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9250008	3L_9250008_SNP [dm3] 3L_9256908_SNP [dm6]	T	C	3.100e^-4	0.878	INTRON GluRIB
3R	19295351	3R_19295351_SNP [dm3] 3R_23469629_SNP [dm6]	T	C	3.101e^-4	0.878	INTRON CG4374
3R	23784376	3R_23784376_SNP [dm3] 3R_27958654_SNP [dm6]	G	A	3.105e^-4	0.878	NON_SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	6699745	3L_6699745_SNP [dm3] 3L_6706645_SNP [dm6]	G	T	3.114e^-4	0.878	UPSTREAM CG8519 INTRON CG8519
3L	1465447	3L_1465447_SNP [dm3] 3L_1465447_SNP [dm6]	C	T	3.130e^-4	0.878	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16992968	3L_16992968_SNP [dm3] 3L_16999868_SNP [dm6]	A	G	3.134e^-4	0.878	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_chinmo
2L	16422200	2L_16422200_DEL [dm3] 2L_16422200_DEL [dm6]	TATATGTTTTAAATATGT...	T	3.149e^-4	0.878	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9990988	2L_9990988_SNP [dm3] 2L_9990988_SNP [dm6]	C	T	3.150e^-4	0.878	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	901217	2L_901217_SNP [dm3] 2L_901217_SNP [dm6]	T	C	3.155e^-4	0.878	UTR_3_PRIME Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11754509	3L_11754509_INS [dm3] 3L_11761409_INS [dm6]	T	TTAAAGC	3.157e^-4	0.878	INTRON CG6024
3R	5481087	3R_5481087_SNP [dm3] 3R_9655365_SNP [dm6]	A	C	3.161e^-4	0.878	INTRON CG9492	TF binding site mE1_TFBS_chinmo
3R	19308978	3R_19308978_SNP [dm3] 3R_23483256_SNP [dm6]	T	C	3.165e^-4	0.878	SYNONYMOUS_CODING Ir94f UPSTREAM Ir94g	TF binding site mE1_TFBS_sens
2R	20506161	2R_20506161_SNP [dm3] 2R_24618638_SNP [dm6]	T	A	3.175e^-4	0.878	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20506179	2R_20506179_SNP [dm3] 2R_24618656_SNP [dm6]	A	T	3.175e^-4	0.878	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1825285	3L_1825285_SNP [dm3] 3L_1825285_SNP [dm6]	C	T	3.183e^-4	0.878	INTRON Cpr62Ba
3R	13387389	3R_13387389_SNP [dm3] 3R_17561667_SNP [dm6]	G	C	3.183e^-4	0.878	INTRON Hmx
X	12426451	X_12426451_SNP [dm3] X_12532418_SNP [dm6]	C	G	3.185e^-4	0.878	INTRON CG43921
2L	14127787	2L_14127787_SNP [dm3] 2L_14127787_SNP [dm6]	A	T	3.185e^-4	0.878	INTERGENIC
2R	18107713	2R_18107713_SNP [dm3] 2R_22220208_SNP [dm6]	C	T	3.192e^-4	0.878	SYNONYMOUS_CODING Oatp58Da DOWNSTREAM Oatp58Db
2L	6514862	2L_6514862_INS [dm3] 2L_6514862_INS [dm6]	G	GTTGCTCTCGCTTG...	3.209e^-4	0.878	INTRON CG31637
3R	22165114	3R_22165114_SNP [dm3] 3R_26339392_SNP [dm6]	T	A	3.225e^-4	0.878	INTRON CG33970
3L	5648665	3L_5648665_SNP [dm3] 3L_5655565_SNP [dm6]	A	G	3.227e^-4	0.878	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18905307	2R_18905307_SNP [dm3] 2R_23017784_SNP [dm6]	G	A	3.231e^-4	0.878	INTRON twi & 1 other
X	8708738	X_8708738_INS [dm3] X_8814705_INS [dm6]	T	TCTTTT	3.232e^-4	0.878	INTERGENIC
3R	20527099	3R_20527099_SNP [dm3] 3R_24701377_SNP [dm6]	C	G	3.239e^-4	0.878	INTRON slo
3R	25515639	3R_25515639_SNP [dm3] 3R_29689917_SNP [dm6]	T	G	3.240e^-4	0.878	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
3R	18541908	3R_18541908_SNP [dm3] 3R_22716186_SNP [dm6]	A	C	3.253e^-4	0.878	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1062853	3L_1062853_SNP [dm3] 3L_1062853_SNP [dm6]	C	T	3.254e^-4	0.878	INTRON bab1
X	7731883	X_7731883_SNP [dm3] X_7837850_SNP [dm6]	C	G	3.256e^-4	0.878	INTRON CG1402
3R	14647260	3R_14647260_SNP [dm3] 3R_18821538_SNP [dm6]	T	G	3.268e^-4	0.878	INTRON CG18208
X	12320533	X_12320533_SNP [dm3] X_12426500_SNP [dm6]	G	A	3.269e^-4	0.878	INTERGENIC
X	12320536	X_12320536_SNP [dm3] X_12426503_SNP [dm6]	C	T	3.269e^-4	0.878	INTERGENIC
X	15744778	X_15744778_SNP [dm3] X_15850745_SNP [dm6]	G	T	3.276e^-4	0.878	INTRON UBL3
2R	16563511	2R_16563511_SNP [dm3] 2R_20676006_SNP [dm6]	C	A	3.279e^-4	0.878	INTERGENIC
3R	9190082	3R_9190082_SNP [dm3] 3R_13364360_SNP [dm6]	C	T	3.285e^-4	0.878	UTR_5_PRIME poly UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	25461116	3R_25461116_SNP [dm3] 3R_29635394_SNP [dm6]	G	C	3.290e^-4	0.878	INTRON Dop1R2
3L	10611603	3L_10611603_SNP [dm3] 3L_10618503_SNP [dm6]	T	C	3.291e^-4	0.878	INTERGENIC
3R	25696086	3R_25696086_SNP [dm3] 3R_29870364_SNP [dm6]	A	T	3.298e^-4	0.878	INTRON CG34133
3R	5014216	3R_5014216_SNP [dm3] 3R_9188494_SNP [dm6]	G	T	3.303e^-4	0.878	INTRON pum	TF binding site mE1_TFBS_inv
3L	6071153	3L_6071153_SNP [dm3] 3L_6078053_SNP [dm6]	T	A	3.303e^-4	0.878	INTRON CG6619
3L	6071154	3L_6071154_SNP [dm3] 3L_6078054_SNP [dm6]	G	A	3.303e^-4	0.878	INTRON CG6619
2R	13989176	2R_13989176_SNP [dm3] 2R_18101671_SNP [dm6]	C	G	3.309e^-4	0.878	SYNONYMOUS_CODING CG5756 DOWNSTREAM CG5098	TF binding site mE1_TFBS_cad
3R	19143288	3R_19143288_SNP [dm3] 3R_23317566_SNP [dm6]	T	G	3.310e^-4	0.878	INTRON pnt
3R	13384423	3R_13384423_DEL [dm3] 3R_17558701_DEL [dm6]	CG	C	3.311e^-4	0.878	UPSTREAM Hmx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10155914	3L_10155914_SNP [dm3] 3L_10162814_SNP [dm6]	A	G	3.312e^-4	0.878	INTRON dpr10
3L	15903212	3L_15903212_SNP [dm3] 3L_15910112_SNP [dm6]	A	T	3.326e^-4	0.878	INTRON sff	TF binding site mE1_TFBS_cad
2R	18494837	2R_18494837_SNP [dm3] 2R_22607332_SNP [dm6]	T	C	3.328e^-4	0.878	UPSTREAM snoRNA:Psi28S-1175c & 2 others DOWNSTREAM snoRNA:Me28S-G2173 & 1 other INTRON RpS16 EXON snoRNA:Psi28S-1175b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	22167646	3R_22167646_SNP [dm3] 3R_26341924_SNP [dm6]	C	T	3.330e^-4	0.878	INTRON CG33970
3L	10765861	3L_10765861_SNP [dm3] 3L_10772761_SNP [dm6]	T	A	3.336e^-4	0.878	INTRON CG43245
X	11938442	X_11938442_SNP [dm3] X_12044409_SNP [dm6]	T	C	3.342e^-4	0.878	INTRON CR43960 & 1 other
2L	11599104	2L_11599104_SNP [dm3] 2L_11599104_SNP [dm6]	G	T	3.345e^-4	0.878	INTRON kek2
2R	8119682	2R_8119682_SNP [dm3] 2R_12232177_SNP [dm6]	T	C	3.356e^-4	0.878	INTERGENIC
3R	22169708	3R_22169708_DEL [dm3] 3R_26343986_DEL [dm6]	GGCAG	G	3.358e^-4	0.878	DOWNSTREAM CG6036 INTRON CG33970
3L	14171098	3L_14171098_SNP [dm3] 3L_14177998_SNP [dm6]	G	C	3.358e^-4	0.878	UTR_5_PRIME D UPSTREAM D	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14171450	3L_14171450_SNP [dm3] 3L_14178350_SNP [dm6]	C	T	3.358e^-4	0.878	UTR_5_PRIME D UPSTREAM D	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14172072	3L_14172072_SNP [dm3] 3L_14178972_SNP [dm6]	C	T	3.358e^-4	0.878	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2431143	X_2431143_SNP [dm3] X_2537110_SNP [dm6]	G	C	3.358e^-4	0.878	INTRON trol	TF binding site mE1_TFBS_bab1
3R	17140163	3R_17140163_SNP [dm3] 3R_21314441_SNP [dm6]	A	T	3.366e^-4	0.878	EXON Hsromega
3R	3974851	3R_3974851_DEL [dm3] 3R_8149129_DEL [dm6]	TAGCT	T	3.366e^-4	0.878	INTRON grn
2R	18111953	2R_18111953_SNP [dm3] 2R_22224448_SNP [dm6]	A	T	3.371e^-4	0.878	NON_SYNONYMOUS_CODING Oatp58Dc UPSTREAM Oatp58Db
X	5231710	X_5231710_SNP [dm3] X_5337677_SNP [dm6]	A	G	3.374e^-4	0.878	INTERGENIC
2R	11245320	2R_11245320_SNP [dm3] 2R_15357815_SNP [dm6]	C	T	3.376e^-4	0.878	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25699603	3R_25699603_SNP [dm3] 3R_29873881_SNP [dm6]	T	C	3.400e^-4	0.878	SYNONYMOUS_CODING CG34133	TF binding site mE1_TFBS_cad
X	8059652	X_8059652_SNP [dm3] X_8165619_SNP [dm6]	A	C	3.403e^-4	0.878	SYNONYMOUS_CODING Or7a DOWNSTREAM CG2278
2R	9430031	2R_9430031_SNP [dm3] 2R_13542526_SNP [dm6]	T	C	3.404e^-4	0.878	UTR_5_PRIME CG6145 INTRON CG6145
3R	26285940	3R_26285940_SNP [dm3] 3R_30460218_SNP [dm6]	G	A	3.405e^-4	0.878	UPSTREAM CG2224 & 1 other INTRON CDase
3R	3498092	3R_3498092_SNP [dm3] 3R_7672370_SNP [dm6]	G	T	3.407e^-4	0.878	INTRON Nlg1
2L	22552279	2L_22552279_SNP [dm3] 2L_22659547_SNP [dm6]	C	T	3.407e^-4	0.878	INTRON CG40006
2R	14458440	2R_14458440_SNP [dm3] 2R_18570935_SNP [dm6]	G	A	3.408e^-4	0.878	INTRON GEFmeso
3L	6116149	3L_6116149_SNP [dm3] 3L_6123049_SNP [dm6]	A	G	3.418e^-4	0.878	UTR_3_PRIME Ets65A DOWNSTREAM Ets65A & 1 other
3R	13355445	3R_13355445_SNP [dm3] 3R_17529723_SNP [dm6]	G	T	3.424e^-4	0.878	INTERGENIC
2L	6448719	2L_6448719_SNP [dm3] 2L_6448719_SNP [dm6]	A	C	3.426e^-4	0.878	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
X	17664119	X_17664119_SNP [dm3] X_17770086_SNP [dm6]	T	G	3.426e^-4	0.878	INTRON unc-4
3R	26285604	3R_26285604_SNP [dm3] 3R_30459882_SNP [dm6]	A	G	3.429e^-4	0.878	UPSTREAM CG2224 & 1 other INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	4487386	2L_4487386_SNP [dm3] 2L_4487386_SNP [dm6]	C	T	3.429e^-4	0.878	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25157261	3R_25157261_SNP [dm3] 3R_29331539_SNP [dm6]	A	G	3.430e^-4	0.878	INTERGENIC
X	20406098	X_20406098_SNP [dm3] X_20535071_SNP [dm6]	T	C	3.430e^-4	0.878	INTERGENIC
3L	8562430	3L_8562430_SNP [dm3] 3L_8569330_SNP [dm6]	A	T	3.431e^-4	0.878	UPSTREAM CR43910 INTRON rhea
3R	25238452	3R_25238452_INS [dm3] 3R_29412730_INS [dm6]	G	CT	3.432e^-4	0.878	INTRON Ptp99A
X	21081254	X_21081254_SNP [dm3] X_21210227_SNP [dm6]	T	A	3.437e^-4	0.878	INTRON CG32521
2R	15430114	2R_15430114_SNP [dm3] 2R_19542609_SNP [dm6]	C	T	3.439e^-4	0.878	INTRON sm	TF binding site mE1_TFBS_inv
2L	14943418	2L_14943418_SNP [dm3] 2L_14943418_SNP [dm6]	T	C	3.440e^-4	0.878	INTRON CG42313
X	9170317	X_9170317_SNP [dm3] X_9276284_SNP [dm6]	A	T	3.449e^-4	0.88	DOWNSTREAM CG16892 INTRON c11.1
2L	14943298	2L_14943298_SNP [dm3] 2L_14943298_SNP [dm6]	G	T	3.462e^-4	0.88	INTRON CG42313
3R	21683519	3R_21683519_SNP [dm3] 3R_25857797_SNP [dm6]	T	A	3.469e^-4	0.88	INTRON CG5890	TF binding site BDTNP1_TFBS_hb
3R	26312470	3R_26312470_INS [dm3] 3R_30486748_INS [dm6]	T	TA	3.470e^-4	0.88	DOWNSTREAM PH4alphaEFB & 1 other INTERGENIC
3L	15903208	3L_15903208_SNP [dm3] 3L_15910108_SNP [dm6]	T	C	3.473e^-4	0.88	INTRON sff	TF binding site mE1_TFBS_cad
X	18980324	X_18980324_SNP [dm3] X_19086291_SNP [dm6]	A	C	3.477e^-4	0.88	INTERGENIC
3L	12046491	3L_12046491_SNP [dm3] 3L_12053391_SNP [dm6]	A	T	3.481e^-4	0.88	INTRON rols
3R	13355669	3R_13355669_SNP [dm3] 3R_17529947_SNP [dm6]	T	A	3.482e^-4	0.88	INTERGENIC
3L	6071379	3L_6071379_SNP [dm3] 3L_6078279_SNP [dm6]	T	A	3.492e^-4	0.88	INTRON CG6619
3L	11141603	3L_11141603_SNP [dm3] 3L_11148503_SNP [dm6]	C	T	3.495e^-4	0.88	INTRON CG32082
2L	11455070	2L_11455070_SNP [dm3] 2L_11455070_SNP [dm6]	T	A	3.501e^-4	0.88	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8708851	X_8708851_SNP [dm3] X_8814818_SNP [dm6]	T	C	3.503e^-4	0.88	INTERGENIC
3R	18782222	3R_18782222_SNP [dm3] 3R_22956500_SNP [dm6]	T	C	3.513e^-4	0.88	INTRON klg
2R	6781909	2R_6781909_SNP [dm3] 2R_10894404_SNP [dm6]	C	T	3.518e^-4	0.88	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
X	21081260	X_21081260_SNP [dm3] X_21210233_SNP [dm6]	G	T	3.524e^-4	0.88	INTRON CG32521
3L	1464971	3L_1464971_SNP [dm3] 3L_1464971_SNP [dm6]	T	A	3.531e^-4	0.88	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	18774552	2L_18774552_SNP [dm3] 2L_18774552_SNP [dm6]	C	T	3.533e^-4	0.88	UPSTREAM CR43804 INTRON ham	TF binding site BDTNP1_TFBS_twi
2L	12512310	2L_12512310_SNP [dm3] 2L_12512310_SNP [dm6]	G	A	3.535e^-4	0.88	INTRON bun
2L	9344980	2L_9344980_SNP [dm3] 2L_9344980_SNP [dm6]	C	A	3.535e^-4	0.88	DOWNSTREAM CG3748 INTERGENIC
2L	13550026	2L_13550026_SNP [dm3] 2L_13550026_SNP [dm6]	T	A	3.549e^-4	0.88	UPSTREAM kuz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9820342	2L_9820342_SNP [dm3] 2L_9820342_SNP [dm6]	T	G	3.552e^-4	0.88	INTRON nAChRalpha6
X	18361381	X_18361381_SNP [dm3] X_18467348_SNP [dm6]	C	T	3.555e^-4	0.88	INTRON CG32547
X	18361384	X_18361384_SNP [dm3] X_18467351_SNP [dm6]	T	C	3.555e^-4	0.88	INTRON CG32547
3L	3487801	3L_3487801_SNP [dm3] 3L_3487801_SNP [dm6]	C	T	3.569e^-4	0.882	INTRON CG42324
2R	15225685	2R_15225685_DEL [dm3] 2R_19338180_DEL [dm6]	AG	A	3.571e^-4	0.882	INTRON Rgk1
X	7988911	X_7988911_SNP [dm3] X_8094878_SNP [dm6]	A	G	3.587e^-4	0.884	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H
2L	6314190	2L_6314190_SNP [dm3] 2L_6314190_SNP [dm6]	G	T	3.588e^-4	0.884	INTRON Ddr
3L	4382190	3L_4382190_SNP [dm3] 3L_4382190_SNP [dm6]	G	C	3.603e^-4	0.885	UPSTREAM CG32240 INTERGENIC
X	8708974	X_8708974_SNP [dm3] X_8814941_SNP [dm6]	C	A	3.610e^-4	0.885	INTERGENIC
X	14606283	X_14606283_DEL [dm3] X_14712250_DEL [dm6]	AA	A	3.612e^-4	0.885	INTRON NetB
3L	10155603	3L_10155603_SNP [dm3] 3L_10162503_SNP [dm6]	T	C	3.613e^-4	0.885	INTRON dpr10
X	8708734	X_8708734_SNP [dm3] X_8814701_SNP [dm6]	G	A	3.620e^-4	0.885	INTERGENIC
2L	8772684	2L_8772684_SNP [dm3] 2L_8772684_SNP [dm6]	A	G	3.624e^-4	0.885	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2R	11407343	2R_11407343_SNP [dm3] 2R_15519838_SNP [dm6]	T	C	3.650e^-4	0.885	SYNONYMOUS_CODING Khc-73
3R	10225060	3R_10225060_SNP [dm3] 3R_14399338_SNP [dm6]	T	C	3.656e^-4	0.885	INTRON cv-c
2L	16596189	2L_16596189_SNP [dm3] 2L_16596189_SNP [dm6]	C	G	3.660e^-4	0.885	INTRON CG42389
3R	25879254	3R_25879254_SNP [dm3] 3R_30053532_SNP [dm6]	T	C	3.668e^-4	0.885	INTRON CG7946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16820474	2R_16820474_SNP [dm3] 2R_20932969_SNP [dm6]	G	C	3.671e^-4	0.885	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18101506	2R_18101506_INS [dm3] 2R_22214001_INS [dm6]	GG	TTT	3.680e^-4	0.885	INTRON ari-2	TF binding site mE1_TFBS_Trl
2L	893610	2L_893610_SNP [dm3] 2L_893610_SNP [dm6]	G	A	3.680e^-4	0.885	INTERGENIC
3R	27166911	3R_27166911_SNP [dm3] 3R_31341189_SNP [dm6]	A	C	3.681e^-4	0.885	INTRON CG34347
2L	18403870	2L_18403870_SNP [dm3] 2L_18403870_SNP [dm6]	A	T	3.682e^-4	0.885	UPSTREAM CR44487 INTERGENIC
2L	4576627	2L_4576627_SNP [dm3] 2L_4576627_SNP [dm6]	C	G	3.686e^-4	0.885	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15972270	3R_15972270_SNP [dm3] 3R_20146548_SNP [dm6]	C	G	3.688e^-4	0.885	INTERGENIC
2R	13691364	2R_13691364_SNP [dm3] 2R_17803859_SNP [dm6]	T	A	3.689e^-4	0.885	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13564817	2R_13564817_SNP [dm3] 2R_17677312_SNP [dm6]	G	A	3.691e^-4	0.885	INTRON Sema-1b
2R	17014689	2R_17014689_SNP [dm3] 2R_21127184_SNP [dm6]	A	G	3.691e^-4	0.885	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	25515681	3R_25515681_SNP [dm3] 3R_29689959_SNP [dm6]	A	C	3.699e^-4	0.885	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
3R	14849940	3R_14849940_SNP [dm3] 3R_19024218_SNP [dm6]	G	A	3.704e^-4	0.885	SYNONYMOUS_CODING CG14286 UPSTREAM CG6005 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1406233	3L_1406233_SNP [dm3] 3L_1406233_SNP [dm6]	G	T	3.713e^-4	0.885	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	15895297	3R_15895297_SNP [dm3] 3R_20069575_SNP [dm6]	T	C	3.713e^-4	0.885	INTERGENIC
2L	902568	2L_902568_SNP [dm3] 2L_902568_SNP [dm6]	A	T	3.714e^-4	0.885	UPSTREAM snRNA:U1:21D INTERGENIC
2L	4487612	2L_4487612_SNP [dm3] 2L_4487612_SNP [dm6]	C	T	3.722e^-4	0.885	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20231460	3R_20231460_SNP [dm3] 3R_24405738_SNP [dm6]	C	T	3.724e^-4	0.885	INTRON nAChRalpha1
2L	9349024	2L_9349024_SNP [dm3] 2L_9349024_SNP [dm6]	G	T	3.726e^-4	0.885	UPSTREAM CG43350 EXON CR44802
2R	14458084	2R_14458084_DEL [dm3] 2R_18570579_DEL [dm6]	ATTGT	A	3.733e^-4	0.885	INTRON GEFmeso
2R	17014708	2R_17014708_SNP [dm3] 2R_21127203_SNP [dm6]	C	A	3.748e^-4	0.885	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	6820876	2L_6820876_SNP [dm3] 2L_6820876_SNP [dm6]	T	C	3.749e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19388701	3R_19388701_SNP [dm3] 3R_23562979_SNP [dm6]	G	A	3.750e^-4	0.885	INTRON beat-IV	TF binding site mE1_TFBS_HSA
2L	10267767	2L_10267767_SNP [dm3] 2L_10267767_SNP [dm6]	A	C	3.756e^-4	0.885	INTRON CG4953
3R	25116807	3R_25116807_SNP [dm3] 3R_29291085_SNP [dm6]	C	G	3.767e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10803295	3L_10803295_SNP [dm3] 3L_10810195_SNP [dm6]	T	C	3.779e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11289879	2R_11289879_SNP [dm3] 2R_15402374_SNP [dm6]	C	T	3.795e^-4	0.885	UTR_5_PRIME CG43729
3L	10901254	3L_10901254_DEL [dm3] 3L_10908154_DEL [dm6]	TTAAGGTATTAATATTTT...	T	3.795e^-4	0.885	INTERGENIC
X	21225859	X_21225859_SNP [dm3] X_21354832_SNP [dm6]	T	C	3.802e^-4	0.885	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12724565	3L_12724565_SNP [dm3] 3L_12731465_SNP [dm6]	C	T	3.804e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6610824	3L_6610824_INS [dm3] 3L_6617724_INS [dm6]	GA	TGTG	3.808e^-4	0.885	INTRON CG8398
2L	9990783	2L_9990783_SNP [dm3] 2L_9990783_SNP [dm6]	G	A	3.808e^-4	0.885	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6820881	2L_6820881_SNP [dm3] 2L_6820881_SNP [dm6]	A	G	3.811e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3274713	2L_3274713_SNP [dm3] 2L_3274713_SNP [dm6]	G	T	3.819e^-4	0.885	INTERGENIC
2L	21004480	2L_21004480_SNP [dm3] 2L_21004480_SNP [dm6]	G	A	3.822e^-4	0.885	INTRON CG42238	TF binding site mE1_TFBS_inv
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	3.823e^-4	0.885	INTRON unc-4
2L	7658219	2L_7658219_SNP [dm3] 2L_7658219_SNP [dm6]	C	G	3.824e^-4	0.885	INTRON Slob
2L	15738082	2L_15738082_SNP [dm3] 2L_15738082_SNP [dm6]	G	T	3.834e^-4	0.885	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10907520	3L_10907520_SNP [dm3] 3L_10914420_SNP [dm6]	A	G	3.838e^-4	0.885	INTERGENIC
X	10150267	X_10150267_SNP [dm3] X_10256234_SNP [dm6]	C	A	3.850e^-4	0.885	UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
3L	1369305	3L_1369305_SNP [dm3] 3L_1369305_SNP [dm6]	C	T	3.857e^-4	0.885	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	20373524	3R_20373524_SNP [dm3] 3R_24547802_SNP [dm6]	A	T	3.859e^-4	0.885	INTRON Esyt2	TF binding site mE1_TFBS_bab1
3L	14977245	3L_14977245_SNP [dm3] 3L_14984145_SNP [dm6]	A	T	3.866e^-4	0.885	UPSTREAM mnd INTRON CG5114
2R	16965304	2R_16965304_SNP [dm3] 2R_21077799_SNP [dm6]	T	A	3.867e^-4	0.885	INTRON Treh
2L	9642883	2L_9642883_SNP [dm3] 2L_9642883_SNP [dm6]	C	A	3.871e^-4	0.885	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo
2R	4459607	2R_4459607_SNP [dm3] 2R_8572102_SNP [dm6]	C	T	3.878e^-4	0.885	UTR_3_PRIME Cyp6a13
3R	14977261	3R_14977261_SNP [dm3] 3R_19151539_SNP [dm6]	C	T	3.883e^-4	0.885	NON_SYNONYMOUS_CODING CG5835
3R	17211349	3R_17211349_SNP [dm3] 3R_21385627_SNP [dm6]	C	G	3.884e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	19506298	3R_19506298_SNP [dm3] 3R_23680576_SNP [dm6]	A	G	3.887e^-4	0.885	SYNONYMOUS_CODING eIF-3p66 DOWNSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19215254	3R_19215254_SNP [dm3] 3R_23389532_SNP [dm6]	G	A	3.890e^-4	0.885	UPSTREAM CG31515 & 1 other INTERGENIC
2L	1030410	2L_1030410_SNP [dm3] 2L_1030410_SNP [dm6]	C	T	3.896e^-4	0.885	INTRON IA-2
3L	21756766	3L_21756766_SNP [dm3] 3L_21763666_SNP [dm6]	C	T	3.899e^-4	0.885	INTRON Syn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11602386	X_11602386_SNP [dm3] X_11708353_SNP [dm6]	T	C	3.899e^-4	0.885	SYNONYMOUS_CODING FucT6
2R	11245333	2R_11245333_SNP [dm3] 2R_15357828_SNP [dm6]	T	C	3.900e^-4	0.885	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	951445	3L_951445_SNP [dm3] 3L_951445_SNP [dm6]	G	A	3.900e^-4	0.885	INTRON Glut1
X	16036000	X_16036000_SNP [dm3] X_16141967_SNP [dm6]	A	C	3.915e^-4	0.885	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2L	6552116	2L_6552116_SNP [dm3] 2L_6552116_SNP [dm6]	T	G	3.918e^-4	0.885	EXON CR44776
2R	16309182	2R_16309182_SNP [dm3] 2R_20421677_SNP [dm6]	A	G	3.932e^-4	0.885	INTERGENIC
3R	24212262	3R_24212262_SNP [dm3] 3R_28386540_SNP [dm6]	T	C	3.936e^-4	0.885	INTERGENIC
3R	24779844	3R_24779844_SNP [dm3] 3R_28954122_SNP [dm6]	C	T	3.936e^-4	0.885	INTRON CG14521
3L	9298923	3L_9298923_SNP [dm3] 3L_9305823_SNP [dm6]	G	A	3.941e^-4	0.885	INTERGENIC
2R	17692094	2R_17692094_SNP [dm3] 2R_21804589_SNP [dm6]	G	T	3.941e^-4	0.885	DOWNSTREAM CR9284 INTERGENIC
2R	17290151	2R_17290151_SNP [dm3] 2R_21402646_SNP [dm6]	G	C	3.944e^-4	0.885	INTRON Sdc
2L	4281124	2L_4281124_DEL [dm3] 2L_4281124_DEL [dm6]	GATGTAGTTTGACTTTG...	G	3.945e^-4	0.885	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19032672	2R_19032672_SNP [dm3] 2R_23145149_SNP [dm6]	A	T	3.946e^-4	0.885	DOWNSTREAM Klp59D INTERGENIC
3R	25658417	3R_25658417_DEL [dm3] 3R_29832695_DEL [dm6]	AA	A	3.949e^-4	0.885	INTRON Atg16
X	5316852	X_5316852_SNP [dm3] X_5422819_SNP [dm6]	A	G	3.960e^-4	0.886	SYNONYMOUS_CODING CG4165	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2142565	3R_2142565_SNP [dm3] 3R_6316843_SNP [dm6]	A	G	3.963e^-4	0.886	INTRON Osi17
2L	904771	2L_904771_DEL [dm3] 2L_904771_DEL [dm6]	TAG	C	3.965e^-4	0.886	DOWNSTREAM CR45261 INTERGENIC
3L	15897755	3L_15897755_SNP [dm3] 3L_15904655_SNP [dm6]	G	C	3.972e^-4	0.886	SPLICE_SITE_REGION sff INTRON sff
2R	6835312	2R_6835312_SNP [dm3] 2R_10947807_SNP [dm6]	G	A	3.991e^-4	0.889	DOWNSTREAM CR45228 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9297963	3L_9297963_SNP [dm3] 3L_9304863_SNP [dm6]	A	T	3.995e^-4	0.889	INTERGENIC
2R	20451723	2R_20451723_SNP [dm3] 2R_24564200_SNP [dm6]	C	T	3.996e^-4	0.889	SYNONYMOUS_CODING CG11414	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18100716	2R_18100716_SNP [dm3] 2R_22213211_SNP [dm6]	C	T	4.013e^-4	0.891	UTR_5_PRIME ari-2 DOWNSTREAM CG11291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25880120	3R_25880120_SNP [dm3] 3R_30054398_SNP [dm6]	T	A	4.028e^-4	0.893	DOWNSTREAM spn-A INTRON CG7946
3R	19576110	3R_19576110_SNP [dm3] 3R_23750388_SNP [dm6]	A	C	4.032e^-4	0.893	DOWNSTREAM RanBP3 INTRON Hmgcr	TF binding site mE1_TFBS_cad
2R	16038901	2R_16038901_SNP [dm3] 2R_20151396_SNP [dm6]	C	T	4.054e^-4	0.895	DOWNSTREAM CR45229 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15483036	X_15483036_SNP [dm3] X_15589003_SNP [dm6]	T	G	4.054e^-4	0.895	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19901411	2R_19901411_SNP [dm3] 2R_24013888_SNP [dm6]	T	C	4.069e^-4	0.895	UTR_5_PRIME Unc-89
3R	7140185	3R_7140185_SNP [dm3] 3R_11314463_SNP [dm6]	C	A	4.074e^-4	0.895	INTERGENIC
3R	26505012	3R_26505012_SNP [dm3] 3R_30679290_SNP [dm6]	C	T	4.081e^-4	0.895	INTERGENIC
3R	25348202	3R_25348202_SNP [dm3] 3R_29522480_SNP [dm6]	G	A	4.083e^-4	0.895	INTERGENIC
2R	15228563	2R_15228563_DEL [dm3] 2R_19341058_DEL [dm6]	CGCAGAA	C	4.091e^-4	0.895	UPSTREAM CG9975 INTRON Rgk1
3R	26516651	3R_26516651_SNP [dm3] 3R_30690929_SNP [dm6]	G	A	4.101e^-4	0.895	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
2L	9645638	2L_9645638_SNP [dm3] 2L_9645638_SNP [dm6]	C	T	4.105e^-4	0.895	SYNONYMOUS_CODING Apoltp
2R	4140221	2R_4140221_SNP [dm3] 2R_8252716_SNP [dm6]	A	G	4.113e^-4	0.895	INTERGENIC
3L	2567975	3L_2567975_SNP [dm3] 3L_2567975_SNP [dm6]	C	G	4.121e^-4	0.895	INTRON msn	regulatory region REDfly_CRMs
3L	12046457	3L_12046457_SNP [dm3] 3L_12053357_SNP [dm6]	C	T	4.124e^-4	0.895	INTRON rols
2L	8777224	2L_8777224_SNP [dm3] 2L_8777224_SNP [dm6]	T	A	4.124e^-4	0.895	UPSTREAM CG9466 DOWNSTREAM CG9468 INTERGENIC
2L	2248450	2L_2248450_SNP [dm3] 2L_2248450_SNP [dm6]	C	G	4.125e^-4	0.895	INTERGENIC
2R	13564928	2R_13564928_SNP [dm3] 2R_17677423_SNP [dm6]	C	T	4.127e^-4	0.895	INTRON Sema-1b
2R	8164247	2R_8164247_SNP [dm3] 2R_12276742_SNP [dm6]	C	T	4.129e^-4	0.895	UTR_3_PRIME Cam DOWNSTREAM Cam
2L	10475797	2L_10475797_SNP [dm3] 2L_10475797_SNP [dm6]	A	T	4.135e^-4	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1093235	2L_1093235_SNP [dm3] 2L_1093235_SNP [dm6]	T	A	4.136e^-4	0.895	INTRON CG4629
2R	1100810	2R_1100810_SNP [dm3] 2R_5213305_SNP [dm6]	A	G	4.139e^-4	0.895	INTRON Nipped-A	transposable element FlyBase
2L	18695597	2L_18695597_SNP [dm3] 2L_18695597_SNP [dm6]	T	C	4.145e^-4	0.895	UTR_5_PRIME CG10383 UPSTREAM CG10338 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16752719	2R_16752719_SNP [dm3] 2R_20865214_SNP [dm6]	T	A	4.153e^-4	0.895	INTRON CG15227
3R	22573603	3R_22573603_SNP [dm3] 3R_26747881_SNP [dm6]	G	A	4.158e^-4	0.895	INTERGENIC
3L	22235907	3L_22235907_SNP [dm3] 3L_22242807_SNP [dm6]	A	G	4.159e^-4	0.895	UTR_3_PRIME olf413 DOWNSTREAM olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15046380	X_15046380_INS [dm3] X_15152347_INS [dm6]	A	AA	4.161e^-4	0.895	INTRON CG9095
3L	6254036	3L_6254036_SNP [dm3] 3L_6260936_SNP [dm6]	C	A	4.162e^-4	0.895	INTRON ImpL3
3R	19322468	3R_19322468_SNP [dm3] 3R_23496746_SNP [dm6]	C	G	4.165e^-4	0.895	INTERGENIC
2L	1921965	2L_1921965_DEL [dm3] 2L_1921965_DEL [dm6]	TG	C	4.172e^-4	0.895	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18404055	2L_18404055_SNP [dm3] 2L_18404055_SNP [dm6]	C	A	4.178e^-4	0.895	EXON CR44487
2L	8711679	2L_8711679_SNP [dm3] 2L_8711679_SNP [dm6]	G	A	4.180e^-4	0.895	INTRON raw
X	19207846	X_19207846_DEL [dm3] X_19313813_DEL [dm6]	TAGT	T	4.186e^-4	0.896	INTRON out
3L	8564713	3L_8564713_SNP [dm3] 3L_8571613_SNP [dm6]	C	T	4.196e^-4	0.897	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo
2R	6347287	2R_6347287_SNP [dm3] 2R_10459782_SNP [dm6]	A	G	4.201e^-4	0.897	UPSTREAM Cyp49a1 INTRON Galphao
3R	23784486	3R_23784486_SNP [dm3] 3R_27958764_SNP [dm6]	C	T	4.215e^-4	0.897	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10156108	3L_10156108_SNP [dm3] 3L_10163008_SNP [dm6]	G	A	4.237e^-4	0.897	INTRON dpr10
3L	22107754	3L_22107754_SNP [dm3] 3L_22114654_SNP [dm6]	G	C	4.240e^-4	0.897	INTERGENIC
2L	2355791	2L_2355791_SNP [dm3] 2L_2355791_SNP [dm6]	C	A	4.240e^-4	0.897	INTRON CG9967 & 1 other
2R	11290184	2R_11290184_SNP [dm3] 2R_15402679_SNP [dm6]	C	A	4.246e^-4	0.897	INTRON CG43729
2R	10961786	2R_10961786_SNP [dm3] 2R_15074281_SNP [dm6]	A	T	4.247e^-4	0.897	INTERGENIC
3R	16837898	3R_16837898_SNP [dm3] 3R_21012176_SNP [dm6]	T	C	4.255e^-4	0.897	SYNONYMOUS_CODING Calx UTR_3_PRIME Calx
3L	4613868	3L_4613868_INS [dm3] 3L_4613868_INS [dm6]	T	TTC	4.255e^-4	0.897	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12448706	2R_12448706_SNP [dm3] 2R_16561201_SNP [dm6]	T	C	4.256e^-4	0.897	SPLICE_SITE_REGION DAT INTRON DAT
2L	9642906	2L_9642906_SNP [dm3] 2L_9642906_SNP [dm6]	A	C	4.258e^-4	0.897	INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3L	10645237	3L_10645237_SNP [dm3] 3L_10652137_SNP [dm6]	C	T	4.260e^-4	0.897	INTRON CG32066
3L	2567924	3L_2567924_SNP [dm3] 3L_2567924_SNP [dm6]	T	C	4.260e^-4	0.897	INTRON msn	regulatory region REDfly_CRMs
3L	20949800	3L_20949800_SNP [dm3] 3L_20956700_SNP [dm6]	A	C	4.263e^-4	0.897	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3R	26707021	3R_26707021_SNP [dm3] 3R_30881299_SNP [dm6]	T	A	4.276e^-4	0.897	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5732345	3L_5732345_SNP [dm3] 3L_5739245_SNP [dm6]	T	C	4.280e^-4	0.897	NON_SYNONYMOUS_CODING sif
2L	3243673	2L_3243673_SNP [dm3] 2L_3243673_SNP [dm6]	G	C	4.285e^-4	0.897	INTERGENIC
3R	18504134	3R_18504134_SNP [dm3] 3R_22678412_SNP [dm6]	T	C	4.289e^-4	0.897	INTRON CG45058	TF binding site mE1_TFBS_cad
2L	7437584	2L_7437584_SNP [dm3] 2L_7437584_SNP [dm6]	C	G	4.289e^-4	0.897	UTR_5_PRIME CG5973	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5648715	3L_5648715_SNP [dm3] 3L_5655615_SNP [dm6]	G	T	4.301e^-4	0.898	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6507164	2R_6507164_INS [dm3] 2R_10619659_INS [dm6]	A	AT	4.311e^-4	0.898	INTRON CG11883
2L	18716848	2L_18716848_SNP [dm3] 2L_18716848_SNP [dm6]	G	T	4.316e^-4	0.898	INTRON CG10348
3R	20918149	3R_20918149_SNP [dm3] 3R_25092427_SNP [dm6]	A	G	4.317e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9631572	2L_9631572_SNP [dm3] 2L_9631572_SNP [dm6]	A	G	4.324e^-4	0.898	INTERGENIC
2R	19100549	2R_19100549_SNP [dm3] 2R_23213026_SNP [dm6]	C	G	4.326e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19571650	3R_19571650_SNP [dm3] 3R_23745928_SNP [dm6]	A	G	4.326e^-4	0.898	INTRON Hmgcr	TF binding site mE1_TFBS_cad
2L	7095768	2L_7095768_SNP [dm3] 2L_7095768_SNP [dm6]	G	A	4.349e^-4	0.9	INTERGENIC
3R	25304772	3R_25304772_SNP [dm3] 3R_29479050_SNP [dm6]	T	A	4.349e^-4	0.9	UPSTREAM Ptp99A INTRON Ptp99A
2R	16161366	2R_16161366_SNP [dm3] 2R_20273861_SNP [dm6]	G	A	4.352e^-4	0.9	SYNONYMOUS_CODING CG10444 UPSTREAM CG11788	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7290758	2R_7290758_SNP [dm3] 2R_11403253_SNP [dm6]	T	G	4.356e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11244817	2R_11244817_SNP [dm3] 2R_15357312_SNP [dm6]	G	A	4.366e^-4	0.901	SYNONYMOUS_CODING unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7849492	2L_7849492_SNP [dm3] 2L_7849492_SNP [dm6]	G	C	4.387e^-4	0.905	SYNONYMOUS_CODING CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10082681	X_10082681_SNP [dm3] X_10188648_SNP [dm6]	G	A	4.396e^-4	0.905	SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	6522163	3L_6522163_SNP [dm3] 3L_6529063_SNP [dm6]	C	G	4.397e^-4	0.905	INTRON sfl
2R	17362455	2R_17362455_SNP [dm3] 2R_21474950_SNP [dm6]	C	T	4.406e^-4	0.905	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16056962	3R_16056962_SNP [dm3] 3R_20231240_SNP [dm6]	C	A	4.409e^-4	0.905	INTRON Nlg4
3R	14718795	3R_14718795_SNP [dm3] 3R_18893073_SNP [dm6]	T	G	4.414e^-4	0.905	INTERGENIC
3L	13131261	3L_13131261_SNP [dm3] 3L_13138161_SNP [dm6]	G	A	4.420e^-4	0.905	INTERGENIC
3L	8001198	3L_8001198_SNP [dm3] 3L_8008098_SNP [dm6]	G	T	4.421e^-4	0.905	INTRON nmo
X	4242594	X_4242594_SNP [dm3] X_4348561_SNP [dm6]	C	G	4.426e^-4	0.905	INTRON norpA
3L	1608007	3L_1608007_SNP [dm3] 3L_1608007_SNP [dm6]	C	T	4.430e^-4	0.905	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1141862	3L_1141862_SNP [dm3] 3L_1141862_SNP [dm6]	C	A	4.448e^-4	0.907	UTR_3_PRIME bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	9649237	2L_9649237_SNP [dm3] 2L_9649237_SNP [dm6]	T	G	4.462e^-4	0.909	SYNONYMOUS_CODING Apoltp
2L	6933490	2L_6933490_SNP [dm3] 2L_6933490_SNP [dm6]	G	A	4.466e^-4	0.909	SYNONYMOUS_CODING CG18304 DOWNSTREAM CG43232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13631333	2L_13631333_SNP [dm3] 2L_13631333_SNP [dm6]	C	G	4.480e^-4	0.91	INTRON kuz
3R	14687773	3R_14687773_SNP [dm3] 3R_18862051_SNP [dm6]	G	A	4.492e^-4	0.91	INTERGENIC
3L	9179991	3L_9179991_SNP [dm3] 3L_9186891_SNP [dm6]	T	C	4.494e^-4	0.91	INTERGENIC
2L	7096948	2L_7096948_SNP [dm3] 2L_7096948_SNP [dm6]	G	T	4.498e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22211807	3R_22211807_SNP [dm3] 3R_26386085_SNP [dm6]	T	C	4.499e^-4	0.91	INTERGENIC
3R	26377722	3R_26377722_SNP [dm3] 3R_30552000_SNP [dm6]	C	A	4.504e^-4	0.91	INTRON tmod
3L	5314739	3L_5314739_DEL [dm3] 3L_5321639_DEL [dm6]	ACC	A	4.505e^-4	0.91	INTERGENIC
X	1965018	X_1965018_SNP [dm3] X_2070985_SNP [dm6]	G	A	4.513e^-4	0.91	UPSTREAM CG4199 & 1 other INTRON CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6522164	3L_6522164_SNP [dm3] 3L_6529064_SNP [dm6]	C	T	4.521e^-4	0.91	INTRON sfl
2R	15895320	2R_15895320_SNP [dm3] 2R_20007815_SNP [dm6]	T	G	4.523e^-4	0.91	DOWNSTREAM CR44628 INTERGENIC
X	7520059	X_7520059_SNP [dm3] X_7626026_SNP [dm6]	C	T	4.526e^-4	0.91	INTRON ct	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	11319422	2L_11319422_INS [dm3] 2L_11319422_INS [dm6]	T	TT	4.529e^-4	0.91	DOWNSTREAM CR44583 INTERGENIC
2L	15765057	2L_15765057_SNP [dm3] 2L_15765057_SNP [dm6]	G	A	4.543e^-4	0.91	NON_SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15765097	2L_15765097_SNP [dm3] 2L_15765097_SNP [dm6]	C	T	4.543e^-4	0.91	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9498602	2L_9498602_SNP [dm3] 2L_9498602_SNP [dm6]	G	A	4.549e^-4	0.91	INTRON CG33298	TF binding site BDTNP1_TFBS_twi
3R	26286001	3R_26286001_SNP [dm3] 3R_30460279_SNP [dm6]	C	G	4.553e^-4	0.91	UPSTREAM CG2224 & 1 other INTRON CDase
2L	7656791	2L_7656791_SNP [dm3] 2L_7656791_SNP [dm6]	C	T	4.555e^-4	0.91	INTRON Slob
2L	4487265	2L_4487265_SNP [dm3] 2L_4487265_SNP [dm6]	A	T	4.561e^-4	0.91	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12227848	2R_12227848_SNP [dm3] 2R_16340343_SNP [dm6]	C	A	4.562e^-4	0.91	NON_SYNONYMOUS_CODING Hmgs DOWNSTREAM CG7997	TF binding site mE1_TFBS_chinmo
3R	25238112	3R_25238112_SNP [dm3] 3R_29412390_SNP [dm6]	C	T	4.576e^-4	0.91	INTRON Ptp99A
3R	9793028	3R_9793028_SNP [dm3] 3R_13967306_SNP [dm6]	G	C	4.577e^-4	0.91	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
X	15483057	X_15483057_SNP [dm3] X_15589024_SNP [dm6]	A	C	4.592e^-4	0.91	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18451158	3R_18451158_SNP [dm3] 3R_22625436_SNP [dm6]	G	A	4.597e^-4	0.91	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	9649054	2L_9649054_SNP [dm3] 2L_9649054_SNP [dm6]	T	C	4.597e^-4	0.91	SYNONYMOUS_CODING Apoltp
2R	1092003	2R_1092003_SNP [dm3] 2R_5204498_SNP [dm6]	C	T	4.597e^-4	0.91	INTRON Nipped-A	transposable element FlyBase
2L	6448685	2L_6448685_SNP [dm3] 2L_6448685_SNP [dm6]	A	G	4.609e^-4	0.91	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
3R	7493458	3R_7493458_SNP [dm3] 3R_11667736_SNP [dm6]	C	G	4.610e^-4	0.91	NON_SYNONYMOUS_CODING CG42327
3R	22177183	3R_22177183_SNP [dm3] 3R_26351461_SNP [dm6]	A	T	4.611e^-4	0.91	INTRON CG33970
3R	21866911	3R_21866911_SNP [dm3] 3R_26041189_SNP [dm6]	G	T	4.619e^-4	0.91	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12046451	3L_12046451_SNP [dm3] 3L_12053351_SNP [dm6]	C	T	4.627e^-4	0.91	INTRON rols
2L	4820300	2L_4820300_SNP [dm3] 2L_4820300_SNP [dm6]	C	T	4.640e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10765764	3L_10765764_SNP [dm3] 3L_10772664_SNP [dm6]	C	A	4.641e^-4	0.91	INTRON CG43245	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17441395	X_17441395_SNP [dm3] X_17547362_SNP [dm6]	T	G	4.643e^-4	0.91	INTRON CG43658
3R	22173674	3R_22173674_SNP [dm3] 3R_26347952_SNP [dm6]	G	C	4.646e^-4	0.91	INTRON CG33970
2R	9145377	2R_9145377_DEL [dm3] 2R_13257872_DEL [dm6]	AA	A	4.660e^-4	0.91	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
X	6705466	X_6705466_SNP [dm3] X_6811433_SNP [dm6]	C	T	4.667e^-4	0.91	INTRON pod1	TF binding site BDTNP1_TFBS_dl
X	6705467	X_6705467_SNP [dm3] X_6811434_SNP [dm6]	C	T	4.667e^-4	0.91	INTRON pod1	TF binding site BDTNP1_TFBS_dl
2R	17571705	2R_17571705_SNP [dm3] 2R_21684200_SNP [dm6]	C	G	4.671e^-4	0.91	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6514851	2L_6514851_DEL [dm3] 2L_6514851_DEL [dm6]	GAATAATGGC	G	4.673e^-4	0.91	INTRON CG31637
2R	4278860	2R_4278860_SNP [dm3] 2R_8391355_SNP [dm6]	A	G	4.684e^-4	0.91	NON_SYNONYMOUS_CODING pdm3	TF binding site mE1_TFBS_chinmo
3R	16014783	3R_16014783_SNP [dm3] 3R_20189061_SNP [dm6]	C	T	4.692e^-4	0.91	INTERGENIC
2L	11378526	2L_11378526_SNP [dm3] 2L_11378526_SNP [dm6]	A	T	4.700e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	13354786	3R_13354786_SNP [dm3] 3R_17529064_SNP [dm6]	T	A	4.703e^-4	0.91	INTERGENIC
2R	10675627	2R_10675627_DEL [dm3] 2R_14788122_DEL [dm6]	GG	G	4.704e^-4	0.91	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10883138	3L_10883138_SNP [dm3] 3L_10890038_SNP [dm6]	A	C	4.707e^-4	0.91	UTR_5_PRIME Cpr67Fa1
3R	25433375	3R_25433375_SNP [dm3] 3R_29607653_SNP [dm6]	C	G	4.709e^-4	0.91	UPSTREAM Diedel2 INTRON alph
2L	3764703	2L_3764703_SNP [dm3] 2L_3764703_SNP [dm6]	A	C	4.710e^-4	0.91	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12773306	3L_12773306_SNP [dm3] 3L_12780206_SNP [dm6]	T	A	4.711e^-4	0.91	SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
2L	5441985	2L_5441985_SNP [dm3] 2L_5441985_SNP [dm6]	C	T	4.711e^-4	0.91	INTERGENIC
2L	20984347	2L_20984347_SNP [dm3] 2L_20984347_SNP [dm6]	T	C	4.716e^-4	0.91	INTRON CG42238
2L	14127670	2L_14127670_SNP [dm3] 2L_14127670_SNP [dm6]	C	T	4.720e^-4	0.91	INTERGENIC
2L	14943301	2L_14943301_SNP [dm3] 2L_14943301_SNP [dm6]	A	T	4.730e^-4	0.911	INTRON CG42313
2L	11319386	2L_11319386_SNP [dm3] 2L_11319386_SNP [dm6]	A	C	4.744e^-4	0.911	DOWNSTREAM CR44583 INTERGENIC
2R	9143673	2R_9143673_SNP [dm3] 2R_13256168_SNP [dm6]	T	C	4.749e^-4	0.911	UPSTREAM CR44343 & 1 other INTERGENIC
3L	22234911	3L_22234911_SNP [dm3] 3L_22241811_SNP [dm6]	A	T	4.749e^-4	0.911	INTRON olf413
2L	3524896	2L_3524896_SNP [dm3] 2L_3524896_SNP [dm6]	A	T	4.749e^-4	0.911	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	4340720	2L_4340720_SNP [dm3] 2L_4340720_SNP [dm6]	A	G	4.756e^-4	0.911	INTRON Atet
2R	17940392	2R_17940392_SNP [dm3] 2R_22052887_SNP [dm6]	T	C	4.756e^-4	0.911	INTERGENIC
2L	6342395	2L_6342395_SNP [dm3] 2L_6342395_SNP [dm6]	G	T	4.765e^-4	0.911	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6401024	X_6401024_SNP [dm3] X_6506991_SNP [dm6]	G	A	4.770e^-4	0.911	INTRON CG42340
X	14417916	X_14417916_SNP [dm3] X_14523883_SNP [dm6]	T	C	4.772e^-4	0.911	INTERGENIC
3R	2168706	3R_2168706_SNP [dm3] 3R_6342984_SNP [dm6]	G	T	4.796e^-4	0.914	UPSTREAM CG10298 DOWNSTREAM CG17917 INTERGENIC
3L	904627	3L_904627_SNP [dm3] 3L_904627_SNP [dm6]	C	A	4.797e^-4	0.914	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10272300	2R_10272300_SNP [dm3] 2R_14384795_SNP [dm6]	A	G	4.810e^-4	0.914	SYNONYMOUS_CODING Dh44-R1
2L	14132582	2L_14132582_SNP [dm3] 2L_14132582_SNP [dm6]	G	T	4.810e^-4	0.914	INTERGENIC
3R	10220698	3R_10220698_SNP [dm3] 3R_14394976_SNP [dm6]	A	C	4.837e^-4	0.917	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10212820	3R_10212820_SNP [dm3] 3R_14387098_SNP [dm6]	A	T	4.837e^-4	0.917	INTERGENIC
3L	10750276	3L_10750276_SNP [dm3] 3L_10757176_SNP [dm6]	T	C	4.843e^-4	0.917	INTERGENIC
3L	8572259	3L_8572259_SNP [dm3] 3L_8579159_SNP [dm6]	G	T	4.843e^-4	0.917	INTRON CG43078	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10091340	3L_10091340_SNP [dm3] 3L_10098240_SNP [dm6]	T	C	4.847e^-4	0.917	UPSTREAM CG42825 INTRON dpr6
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	4.852e^-4	0.917	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	15523412	2L_15523412_SNP [dm3] 2L_15523412_SNP [dm6]	C	A	4.897e^-4	0.918	INTRON CR43761 EXON CR43761
3R	24421229	3R_24421229_SNP [dm3] 3R_28595507_SNP [dm6]	A	G	4.900e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	11246551	2L_11246551_SNP [dm3] 2L_11246551_SNP [dm6]	T	C	4.909e^-4	0.918	INTRON ab	TF binding site mE1_TFBS_chinmo
3R	22635422	3R_22635422_SNP [dm3] 3R_26809700_SNP [dm6]	T	A	4.923e^-4	0.918	INTRON Tl
3R	18451150	3R_18451150_SNP [dm3] 3R_22625428_SNP [dm6]	C	T	4.926e^-4	0.918	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	20338347	3L_20338347_SNP [dm3] 3L_20345247_SNP [dm6]	T	C	4.928e^-4	0.918	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
X	5278672	X_5278672_SNP [dm3] X_5384639_SNP [dm6]	C	T	4.929e^-4	0.918	INTRON SK
2L	12512173	2L_12512173_SNP [dm3] 2L_12512173_SNP [dm6]	T	C	4.930e^-4	0.918	INTRON bun

By genomic position
Variant impact
Gene name

mn_Triglyceride_Pool phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results