DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.087e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01489

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	9.4637	0.0088

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1855 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7353392	2L_7353392_SNP [dm3] 2L_7353392_SNP [dm6]	A	C	6.773e^-7	0.642	DOWNSTREAM Wnt6 INTERGENIC
2L	8316116	2L_8316116_SNP [dm3] 2L_8316116_SNP [dm6]	T	C	6.854e^-7	0.642	SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
2R	13526944	2R_13526944_DEL [dm3] 2R_17639439_DEL [dm6]	TGGTTTATTTACATT...	T	1.282e^-6	0.801	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13186615	2R_13186615_SNP [dm3] 2R_17299110_SNP [dm6]	C	T	1.711e^-6	0.802	INTRON mbl
3L	15210888	3L_15210888_SNP [dm3] 3L_15217788_SNP [dm6]	C	T	5.043e^-6	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5171782	3L_5171782_SNP [dm3] 3L_5178682_SNP [dm6]	C	T	6.489e^-6	0.988	INTRON shep
3R	26504303	3R_26504303_SNP [dm3] 3R_30678581_SNP [dm6]	C	A	6.577e^-6	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	26504311	3R_26504311_SNP [dm3] 3R_30678589_SNP [dm6]	G	A	6.577e^-6	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	8765736	X_8765736_SNP [dm3] X_8871703_SNP [dm6]	T	G	7.502e^-6	0.988	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3R	13856596	3R_13856596_DEL [dm3] 3R_18030874_DEL [dm6]	GA	G	7.656e^-6	0.988	INTERGENIC
2L	15755322	2L_15755322_SNP [dm3] 2L_15755322_SNP [dm6]	T	C	7.964e^-6	0.988	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
X	1876052	X_1876052_SNP [dm3] X_1982019_SNP [dm6]	G	A	8.663e^-6	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo
3L	6635579	3L_6635579_SNP [dm3] 3L_6642479_SNP [dm6]	G	A	1.062e^-5	0.988	DOWNSTREAM CR45238 EXON CR45239
2R	13526990	2R_13526990_SNP [dm3] 2R_17639485_SNP [dm6]	A	G	1.079e^-5	0.988	UPSTREAM CG10936 INTERGENIC
2L	7353434	2L_7353434_SNP [dm3] 2L_7353434_SNP [dm6]	A	T	1.146e^-5	0.988	DOWNSTREAM Wnt6 INTERGENIC
3L	411446	3L_411446_SNP [dm3] 3L_411446_SNP [dm6]	T	C	1.204e^-5	0.988	INTERGENIC
3R	5822080	3R_5822080_SNP [dm3] 3R_9996358_SNP [dm6]	C	A	1.225e^-5	0.988	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17662696	3R_17662696_SNP [dm3] 3R_21836974_SNP [dm6]	A	T	1.230e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8765729	X_8765729_SNP [dm3] X_8871696_SNP [dm6]	A	G	1.247e^-5	0.988	NON_SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3L	8729997	3L_8729997_SNP [dm3] 3L_8736897_SNP [dm6]	G	C	1.277e^-5	0.988	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	8765688	X_8765688_SNP [dm3] X_8871655_SNP [dm6]	C	T	1.281e^-5	0.988	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3R	26735294	3R_26735294_SNP [dm3] 3R_30909572_SNP [dm6]	T	A	1.309e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15593886	3L_15593886_SNP [dm3] 3L_15600786_SNP [dm6]	C	T	1.639e^-5	0.988	SYNONYMOUS_CODING RhoGAP71E
2L	9601737	2L_9601737_SNP [dm3] 2L_9601737_SNP [dm6]	C	T	1.720e^-5	0.988	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10242299	3L_10242299_SNP [dm3] 3L_10249199_SNP [dm6]	A	G	1.856e^-5	0.988	UPSTREAM CR44540 INTERGENIC
2R	19475645	2R_19475645_SNP [dm3] 2R_23588122_SNP [dm6]	G	T	1.899e^-5	0.988	INTRON apt	TF binding site BDTNP1_TFBS_dl
3L	5496095	3L_5496095_SNP [dm3] 3L_5502995_SNP [dm6]	A	C	1.959e^-5	0.988	DOWNSTREAM CG34342 INTERGENIC
X	1875888	X_1875888_SNP [dm3] X_1981855_SNP [dm6]	A	C	1.988e^-5	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19915814	2R_19915814_SNP [dm3] 2R_24028291_SNP [dm6]	A	G	2.019e^-5	0.988	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13601326	2R_13601326_SNP [dm3] 2R_17713821_SNP [dm6]	G	A	2.039e^-5	0.988	INTRON CG6424
X	10966750	X_10966750_SNP [dm3] X_11072717_SNP [dm6]	A	G	2.146e^-5	0.988	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	18684321	3R_18684321_SNP [dm3] 3R_22858599_SNP [dm6]	C	G	2.190e^-5	0.988	INTERGENIC
3L	2579832	3L_2579832_SNP [dm3] 3L_2579832_SNP [dm6]	C	T	2.264e^-5	0.988	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1473125	3L_1473125_DEL [dm3] 3L_1473125_DEL [dm6]	TT	T	2.476e^-5	0.988	UTR_5_PRIME Ptp61F
X	9576530	X_9576530_SNP [dm3] X_9682497_SNP [dm6]	A	G	2.515e^-5	0.988	INTRON nej
2R	12196928	2R_12196928_SNP [dm3] 2R_16309423_SNP [dm6]	A	T	2.539e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26742576	3R_26742576_DEL [dm3] 3R_30916854_DEL [dm6]	TT	T	2.565e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_da
2L	2864736	2L_2864736_SNP [dm3] 2L_2864736_SNP [dm6]	C	G	2.601e^-5	0.988	INTRON CG2991
3R	26519124	3R_26519124_SNP [dm3] 3R_30693402_SNP [dm6]	C	G	2.636e^-5	0.988	DOWNSTREAM CG12069 & 1 other INTERGENIC
3R	5471598	3R_5471598_SNP [dm3] 3R_9645876_SNP [dm6]	G	T	2.742e^-5	0.988	SYNONYMOUS_CODING Fst INTRON Dh44	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	620909	2L_620909_SNP [dm3] 2L_620909_SNP [dm6]	A	C	2.763e^-5	0.988	NON_SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9084737	3L_9084737_DEL [dm3] 3L_9091637_DEL [dm6]	TTAGGCT	T	2.809e^-5	0.988	INTRON Tequila
X	15524230	X_15524230_SNP [dm3] X_15630197_SNP [dm6]	A	G	2.852e^-5	0.988	INTRON sog
3R	26746362	3R_26746362_SNP [dm3] 3R_30920640_SNP [dm6]	A	G	2.868e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	12896415	X_12896415_SNP [dm3] X_13002382_SNP [dm6]	G	A	2.875e^-5	0.988	INTRON rad
3L	5156871	3L_5156871_SNP [dm3] 3L_5163771_SNP [dm6]	G	T	3.020e^-5	0.988	INTRON shep
3R	18684318	3R_18684318_SNP [dm3] 3R_22858596_SNP [dm6]	G	A	3.105e^-5	0.988	INTERGENIC
3L	3148578	3L_3148578_SNP [dm3] 3L_3148578_SNP [dm6]	G	T	3.144e^-5	0.988	UPSTREAM BtbVII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	6755185	X_6755185_SNP [dm3] X_6861152_SNP [dm6]	T	G	3.160e^-5	0.988	INTRON CG14434 EXON CR45531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13357922	2R_13357922_DEL [dm3] 2R_17470417_DEL [dm6]	TACGT	T	3.226e^-5	0.988	INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	3779378	2R_3779378_SNP [dm3] 2R_7891873_SNP [dm6]	T	A	3.245e^-5	0.988	INTRON CG30377
3L	10144859	3L_10144859_SNP [dm3] 3L_10151759_SNP [dm6]	T	C	3.247e^-5	0.988	UPSTREAM CG8072 & 1 other INTRON dpr10
3R	26749001	3R_26749001_SNP [dm3] 3R_30923279_SNP [dm6]	A	T	3.325e^-5	0.988	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19813257	2R_19813257_SNP [dm3] 2R_23925734_SNP [dm6]	G	A	3.382e^-5	0.988	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26745494	3R_26745494_SNP [dm3] 3R_30919772_SNP [dm6]	A	T	3.536e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3148776	3L_3148776_SNP [dm3] 3L_3148776_SNP [dm6]	A	T	3.626e^-5	0.988	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17623111	2R_17623111_DEL [dm3] 2R_21735606_DEL [dm6]	CCC	C	3.675e^-5	0.988	INTERGENIC
3L	15593690	3L_15593690_SNP [dm3] 3L_15600590_SNP [dm6]	C	A	3.776e^-5	0.988	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_dl
3R	5822034	3R_5822034_SNP [dm3] 3R_9996312_SNP [dm6]	G	A	3.850e^-5	0.988	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6758156	X_6758156_SNP [dm3] X_6864123_SNP [dm6]	T	A	3.904e^-5	0.988	UTR_5_PRIME CG43736 DOWNSTREAM CR45531 INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22435483	3L_22435483_SNP [dm3] 3L_22442383_SNP [dm6]	G	A	3.939e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18684403	3R_18684403_SNP [dm3] 3R_22858681_SNP [dm6]	C	T	3.947e^-5	0.988	INTERGENIC
3R	26735295	3R_26735295_DEL [dm3] 3R_30909573_DEL [dm6]	CGGAAAACAT	C	3.967e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1870046	X_1870046_SNP [dm3] X_1976013_SNP [dm6]	G	C	4.022e^-5	0.988	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13005582	X_13005582_SNP [dm3] X_13111549_SNP [dm6]	G	T	4.034e^-5	0.988	INTRON CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2187969	2L_2187969_SNP [dm3] 2L_2187969_SNP [dm6]	C	T	4.055e^-5	0.988	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066
3R	21237538	3R_21237538_SNP [dm3] 3R_25411816_SNP [dm6]	C	T	4.151e^-5	0.988	INTRON Fur1
3L	9433238	3L_9433238_SNP [dm3] 3L_9440138_SNP [dm6]	G	A	4.180e^-5	0.988	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3	transposable element FlyBase
3R	17110098	3R_17110098_SNP [dm3] 3R_21284376_SNP [dm6]	A	C	4.242e^-5	0.988	DOWNSTREAM CG17298 INTRON SIFaR
X	17073059	X_17073059_SNP [dm3] X_17179026_SNP [dm6]	C	T	4.333e^-5	0.988	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11038069	2R_11038069_SNP [dm3] 2R_15150564_SNP [dm6]	T	G	4.402e^-5	0.988	DOWNSTREAM CG7544 INTERGENIC
2L	18915465	2L_18915465_SNP [dm3] 2L_18915465_SNP [dm6]	T	C	4.414e^-5	0.988	DOWNSTREAM ssp3 INTERGENIC
3R	7041175	3R_7041175_SNP [dm3] 3R_11215453_SNP [dm6]	A	T	4.489e^-5	0.988	UTR_3_PRIME RpS25 UPSTREAM ZnT86D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	26732156	3R_26732156_SNP [dm3] 3R_30906434_SNP [dm6]	C	T	4.513e^-5	0.988	INTERGENIC
3R	9987108	3R_9987108_SNP [dm3] 3R_14161386_SNP [dm6]	G	C	4.601e^-5	0.988	INTERGENIC
X	2320369	X_2320369_SNP [dm3] X_2426336_SNP [dm6]	T	G	4.611e^-5	0.988	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC	transposable element FlyBase
3R	26746465	3R_26746465_SNP [dm3] 3R_30920743_SNP [dm6]	A	G	4.613e^-5	0.988	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7353310	2L_7353310_SNP [dm3] 2L_7353310_SNP [dm6]	C	T	4.628e^-5	0.988	DOWNSTREAM Wnt6 INTERGENIC
X	14406614	X_14406614_SNP [dm3] X_14512581_SNP [dm6]	G	T	4.788e^-5	0.988	INTERGENIC
X	13696814	X_13696814_SNP [dm3] X_13802781_SNP [dm6]	A	C	4.815e^-5	0.988	INTRON inaE
3R	23275025	3R_23275025_SNP [dm3] 3R_27449303_SNP [dm6]	T	A	4.821e^-5	0.988	INTERGENIC
3L	3607491	3L_3607491_SNP [dm3] 3L_3607491_SNP [dm6]	C	T	4.884e^-5	0.988	INTRON Eip63E
X	4292937	X_4292937_SNP [dm3] X_4398904_SNP [dm6]	G	A	4.930e^-5	0.988	INTRON CR32773
X	1869437	X_1869437_SNP [dm3] X_1975404_SNP [dm6]	T	C	5.002e^-5	0.988	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9433231	3L_9433231_SNP [dm3] 3L_9440131_SNP [dm6]	C	T	5.085e^-5	0.988	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3	transposable element FlyBase
2L	14101457	2L_14101457_SNP [dm3] 2L_14101457_SNP [dm6]	C	T	5.114e^-5	0.988	INTERGENIC
2L	4046261	2L_4046261_SNP [dm3] 2L_4046261_SNP [dm6]	G	C	5.227e^-5	0.988	INTRON ed	TF binding site mE1_TFBS_HSA
3R	23274707	3R_23274707_SNP [dm3] 3R_27448985_SNP [dm6]	G	A	5.248e^-5	0.988	INTERGENIC
2L	14416631	2L_14416631_INS [dm3] 2L_14416631_INS [dm6]	A	ACTATATGAGAA...	5.301e^-5	0.988	DOWNSTREAM Pburs INTERGENIC
2R	12196729	2R_12196729_SNP [dm3] 2R_16309224_SNP [dm6]	T	C	5.374e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19756057	3R_19756057_SNP [dm3] 3R_23930335_SNP [dm6]	A	G	5.617e^-5	0.988	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3598862	X_3598862_DEL [dm3] X_3704829_DEL [dm6]	CGGC	C	5.668e^-5	0.988	UTR_3_PRIME Rala DOWNSTREAM Rala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12196925	2R_12196925_SNP [dm3] 2R_16309420_SNP [dm6]	A	G	5.682e^-5	0.988	START_GAINED Nox UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15953764	X_15953764_SNP [dm3] X_16059731_SNP [dm6]	A	G	5.776e^-5	0.988	NON_SYNONYMOUS_CODING Muc14A
3L	22435552	3L_22435552_SNP [dm3] 3L_22442452_SNP [dm6]	C	T	5.833e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22435577	3L_22435577_SNP [dm3] 3L_22442477_SNP [dm6]	G	A	5.833e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5124374	X_5124374_SNP [dm3] X_5230341_SNP [dm6]	A	G	5.890e^-5	0.988	INTRON rg & 1 other
3L	16199996	3L_16199996_SNP [dm3] 3L_16206896_SNP [dm6]	A	C	5.942e^-5	0.988	INTERGENIC
2L	6142692	2L_6142692_SNP [dm3] 2L_6142692_SNP [dm6]	G	A	6.023e^-5	0.988	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12196934	2R_12196934_SNP [dm3] 2R_16309429_SNP [dm6]	A	C	6.054e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv

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By genomic position
Variant impact
Gene name

mn_Glycogen_LowDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results