DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.087e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01489

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	9.4637	0.0088

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1855 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7353392	2L_7353392_SNP [dm3] 2L_7353392_SNP [dm6]	A	C	6.773e^-7	0.642	DOWNSTREAM Wnt6 INTERGENIC
2L	8316116	2L_8316116_SNP [dm3] 2L_8316116_SNP [dm6]	T	C	6.854e^-7	0.642	SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
2R	13526944	2R_13526944_DEL [dm3] 2R_17639439_DEL [dm6]	TGGTTTATTTACATT...	T	1.282e^-6	0.801	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13186615	2R_13186615_SNP [dm3] 2R_17299110_SNP [dm6]	C	T	1.711e^-6	0.802	INTRON mbl
3L	15210888	3L_15210888_SNP [dm3] 3L_15217788_SNP [dm6]	C	T	5.043e^-6	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5171782	3L_5171782_SNP [dm3] 3L_5178682_SNP [dm6]	C	T	6.489e^-6	0.988	INTRON shep
3R	26504303	3R_26504303_SNP [dm3] 3R_30678581_SNP [dm6]	C	A	6.577e^-6	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	26504311	3R_26504311_SNP [dm3] 3R_30678589_SNP [dm6]	G	A	6.577e^-6	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	8765736	X_8765736_SNP [dm3] X_8871703_SNP [dm6]	T	G	7.502e^-6	0.988	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3R	13856596	3R_13856596_DEL [dm3] 3R_18030874_DEL [dm6]	GA	G	7.656e^-6	0.988	INTERGENIC
2L	15755322	2L_15755322_SNP [dm3] 2L_15755322_SNP [dm6]	T	C	7.964e^-6	0.988	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
X	1876052	X_1876052_SNP [dm3] X_1982019_SNP [dm6]	G	A	8.663e^-6	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo
3L	6635579	3L_6635579_SNP [dm3] 3L_6642479_SNP [dm6]	G	A	1.062e^-5	0.988	DOWNSTREAM CR45238 EXON CR45239
2R	13526990	2R_13526990_SNP [dm3] 2R_17639485_SNP [dm6]	A	G	1.079e^-5	0.988	UPSTREAM CG10936 INTERGENIC
2L	7353434	2L_7353434_SNP [dm3] 2L_7353434_SNP [dm6]	A	T	1.146e^-5	0.988	DOWNSTREAM Wnt6 INTERGENIC
3L	411446	3L_411446_SNP [dm3] 3L_411446_SNP [dm6]	T	C	1.204e^-5	0.988	INTERGENIC
3R	5822080	3R_5822080_SNP [dm3] 3R_9996358_SNP [dm6]	C	A	1.225e^-5	0.988	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17662696	3R_17662696_SNP [dm3] 3R_21836974_SNP [dm6]	A	T	1.230e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8765729	X_8765729_SNP [dm3] X_8871696_SNP [dm6]	A	G	1.247e^-5	0.988	NON_SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3L	8729997	3L_8729997_SNP [dm3] 3L_8736897_SNP [dm6]	G	C	1.277e^-5	0.988	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	8765688	X_8765688_SNP [dm3] X_8871655_SNP [dm6]	C	T	1.281e^-5	0.988	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3R	26735294	3R_26735294_SNP [dm3] 3R_30909572_SNP [dm6]	T	A	1.309e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15593886	3L_15593886_SNP [dm3] 3L_15600786_SNP [dm6]	C	T	1.639e^-5	0.988	SYNONYMOUS_CODING RhoGAP71E
2L	9601737	2L_9601737_SNP [dm3] 2L_9601737_SNP [dm6]	C	T	1.720e^-5	0.988	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10242299	3L_10242299_SNP [dm3] 3L_10249199_SNP [dm6]	A	G	1.856e^-5	0.988	UPSTREAM CR44540 INTERGENIC
2R	19475645	2R_19475645_SNP [dm3] 2R_23588122_SNP [dm6]	G	T	1.899e^-5	0.988	INTRON apt	TF binding site BDTNP1_TFBS_dl
3L	5496095	3L_5496095_SNP [dm3] 3L_5502995_SNP [dm6]	A	C	1.959e^-5	0.988	DOWNSTREAM CG34342 INTERGENIC
X	1875888	X_1875888_SNP [dm3] X_1981855_SNP [dm6]	A	C	1.988e^-5	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19915814	2R_19915814_SNP [dm3] 2R_24028291_SNP [dm6]	A	G	2.019e^-5	0.988	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13601326	2R_13601326_SNP [dm3] 2R_17713821_SNP [dm6]	G	A	2.039e^-5	0.988	INTRON CG6424
X	10966750	X_10966750_SNP [dm3] X_11072717_SNP [dm6]	A	G	2.146e^-5	0.988	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	18684321	3R_18684321_SNP [dm3] 3R_22858599_SNP [dm6]	C	G	2.190e^-5	0.988	INTERGENIC
3L	2579832	3L_2579832_SNP [dm3] 3L_2579832_SNP [dm6]	C	T	2.264e^-5	0.988	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1473125	3L_1473125_DEL [dm3] 3L_1473125_DEL [dm6]	TT	T	2.476e^-5	0.988	UTR_5_PRIME Ptp61F
X	9576530	X_9576530_SNP [dm3] X_9682497_SNP [dm6]	A	G	2.515e^-5	0.988	INTRON nej
2R	12196928	2R_12196928_SNP [dm3] 2R_16309423_SNP [dm6]	A	T	2.539e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26742576	3R_26742576_DEL [dm3] 3R_30916854_DEL [dm6]	TT	T	2.565e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_da
2L	2864736	2L_2864736_SNP [dm3] 2L_2864736_SNP [dm6]	C	G	2.601e^-5	0.988	INTRON CG2991
3R	26519124	3R_26519124_SNP [dm3] 3R_30693402_SNP [dm6]	C	G	2.636e^-5	0.988	DOWNSTREAM CG12069 & 1 other INTERGENIC
3R	5471598	3R_5471598_SNP [dm3] 3R_9645876_SNP [dm6]	G	T	2.742e^-5	0.988	SYNONYMOUS_CODING Fst INTRON Dh44	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	620909	2L_620909_SNP [dm3] 2L_620909_SNP [dm6]	A	C	2.763e^-5	0.988	NON_SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9084737	3L_9084737_DEL [dm3] 3L_9091637_DEL [dm6]	TTAGGCT	T	2.809e^-5	0.988	INTRON Tequila
X	15524230	X_15524230_SNP [dm3] X_15630197_SNP [dm6]	A	G	2.852e^-5	0.988	INTRON sog
3R	26746362	3R_26746362_SNP [dm3] 3R_30920640_SNP [dm6]	A	G	2.868e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	12896415	X_12896415_SNP [dm3] X_13002382_SNP [dm6]	G	A	2.875e^-5	0.988	INTRON rad
3L	5156871	3L_5156871_SNP [dm3] 3L_5163771_SNP [dm6]	G	T	3.020e^-5	0.988	INTRON shep
3R	18684318	3R_18684318_SNP [dm3] 3R_22858596_SNP [dm6]	G	A	3.105e^-5	0.988	INTERGENIC
3L	3148578	3L_3148578_SNP [dm3] 3L_3148578_SNP [dm6]	G	T	3.144e^-5	0.988	UPSTREAM BtbVII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	6755185	X_6755185_SNP [dm3] X_6861152_SNP [dm6]	T	G	3.160e^-5	0.988	INTRON CG14434 EXON CR45531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13357922	2R_13357922_DEL [dm3] 2R_17470417_DEL [dm6]	TACGT	T	3.226e^-5	0.988	INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	3779378	2R_3779378_SNP [dm3] 2R_7891873_SNP [dm6]	T	A	3.245e^-5	0.988	INTRON CG30377
3L	10144859	3L_10144859_SNP [dm3] 3L_10151759_SNP [dm6]	T	C	3.247e^-5	0.988	UPSTREAM CG8072 & 1 other INTRON dpr10
3R	26749001	3R_26749001_SNP [dm3] 3R_30923279_SNP [dm6]	A	T	3.325e^-5	0.988	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19813257	2R_19813257_SNP [dm3] 2R_23925734_SNP [dm6]	G	A	3.382e^-5	0.988	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26745494	3R_26745494_SNP [dm3] 3R_30919772_SNP [dm6]	A	T	3.536e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3148776	3L_3148776_SNP [dm3] 3L_3148776_SNP [dm6]	A	T	3.626e^-5	0.988	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17623111	2R_17623111_DEL [dm3] 2R_21735606_DEL [dm6]	CCC	C	3.675e^-5	0.988	INTERGENIC
3L	15593690	3L_15593690_SNP [dm3] 3L_15600590_SNP [dm6]	C	A	3.776e^-5	0.988	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_dl
3R	5822034	3R_5822034_SNP [dm3] 3R_9996312_SNP [dm6]	G	A	3.850e^-5	0.988	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6758156	X_6758156_SNP [dm3] X_6864123_SNP [dm6]	T	A	3.904e^-5	0.988	UTR_5_PRIME CG43736 DOWNSTREAM CR45531 INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22435483	3L_22435483_SNP [dm3] 3L_22442383_SNP [dm6]	G	A	3.939e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18684403	3R_18684403_SNP [dm3] 3R_22858681_SNP [dm6]	C	T	3.947e^-5	0.988	INTERGENIC
3R	26735295	3R_26735295_DEL [dm3] 3R_30909573_DEL [dm6]	CGGAAAACAT	C	3.967e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1870046	X_1870046_SNP [dm3] X_1976013_SNP [dm6]	G	C	4.022e^-5	0.988	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13005582	X_13005582_SNP [dm3] X_13111549_SNP [dm6]	G	T	4.034e^-5	0.988	INTRON CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2187969	2L_2187969_SNP [dm3] 2L_2187969_SNP [dm6]	C	T	4.055e^-5	0.988	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066
3R	21237538	3R_21237538_SNP [dm3] 3R_25411816_SNP [dm6]	C	T	4.151e^-5	0.988	INTRON Fur1
3L	9433238	3L_9433238_SNP [dm3] 3L_9440138_SNP [dm6]	G	A	4.180e^-5	0.988	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3	transposable element FlyBase
3R	17110098	3R_17110098_SNP [dm3] 3R_21284376_SNP [dm6]	A	C	4.242e^-5	0.988	DOWNSTREAM CG17298 INTRON SIFaR
X	17073059	X_17073059_SNP [dm3] X_17179026_SNP [dm6]	C	T	4.333e^-5	0.988	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11038069	2R_11038069_SNP [dm3] 2R_15150564_SNP [dm6]	T	G	4.402e^-5	0.988	DOWNSTREAM CG7544 INTERGENIC
2L	18915465	2L_18915465_SNP [dm3] 2L_18915465_SNP [dm6]	T	C	4.414e^-5	0.988	DOWNSTREAM ssp3 INTERGENIC
3R	7041175	3R_7041175_SNP [dm3] 3R_11215453_SNP [dm6]	A	T	4.489e^-5	0.988	UTR_3_PRIME RpS25 UPSTREAM ZnT86D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	26732156	3R_26732156_SNP [dm3] 3R_30906434_SNP [dm6]	C	T	4.513e^-5	0.988	INTERGENIC
3R	9987108	3R_9987108_SNP [dm3] 3R_14161386_SNP [dm6]	G	C	4.601e^-5	0.988	INTERGENIC
X	2320369	X_2320369_SNP [dm3] X_2426336_SNP [dm6]	T	G	4.611e^-5	0.988	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC	transposable element FlyBase
3R	26746465	3R_26746465_SNP [dm3] 3R_30920743_SNP [dm6]	A	G	4.613e^-5	0.988	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7353310	2L_7353310_SNP [dm3] 2L_7353310_SNP [dm6]	C	T	4.628e^-5	0.988	DOWNSTREAM Wnt6 INTERGENIC
X	14406614	X_14406614_SNP [dm3] X_14512581_SNP [dm6]	G	T	4.788e^-5	0.988	INTERGENIC
X	13696814	X_13696814_SNP [dm3] X_13802781_SNP [dm6]	A	C	4.815e^-5	0.988	INTRON inaE
3R	23275025	3R_23275025_SNP [dm3] 3R_27449303_SNP [dm6]	T	A	4.821e^-5	0.988	INTERGENIC
3L	3607491	3L_3607491_SNP [dm3] 3L_3607491_SNP [dm6]	C	T	4.884e^-5	0.988	INTRON Eip63E
X	4292937	X_4292937_SNP [dm3] X_4398904_SNP [dm6]	G	A	4.930e^-5	0.988	INTRON CR32773
X	1869437	X_1869437_SNP [dm3] X_1975404_SNP [dm6]	T	C	5.002e^-5	0.988	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9433231	3L_9433231_SNP [dm3] 3L_9440131_SNP [dm6]	C	T	5.085e^-5	0.988	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3	transposable element FlyBase
2L	14101457	2L_14101457_SNP [dm3] 2L_14101457_SNP [dm6]	C	T	5.114e^-5	0.988	INTERGENIC
2L	4046261	2L_4046261_SNP [dm3] 2L_4046261_SNP [dm6]	G	C	5.227e^-5	0.988	INTRON ed	TF binding site mE1_TFBS_HSA
3R	23274707	3R_23274707_SNP [dm3] 3R_27448985_SNP [dm6]	G	A	5.248e^-5	0.988	INTERGENIC
2L	14416631	2L_14416631_INS [dm3] 2L_14416631_INS [dm6]	A	ACTATATGAGAA...	5.301e^-5	0.988	DOWNSTREAM Pburs INTERGENIC
2R	12196729	2R_12196729_SNP [dm3] 2R_16309224_SNP [dm6]	T	C	5.374e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19756057	3R_19756057_SNP [dm3] 3R_23930335_SNP [dm6]	A	G	5.617e^-5	0.988	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3598862	X_3598862_DEL [dm3] X_3704829_DEL [dm6]	CGGC	C	5.668e^-5	0.988	UTR_3_PRIME Rala DOWNSTREAM Rala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12196925	2R_12196925_SNP [dm3] 2R_16309420_SNP [dm6]	A	G	5.682e^-5	0.988	START_GAINED Nox UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15953764	X_15953764_SNP [dm3] X_16059731_SNP [dm6]	A	G	5.776e^-5	0.988	NON_SYNONYMOUS_CODING Muc14A
3L	22435552	3L_22435552_SNP [dm3] 3L_22442452_SNP [dm6]	C	T	5.833e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22435577	3L_22435577_SNP [dm3] 3L_22442477_SNP [dm6]	G	A	5.833e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5124374	X_5124374_SNP [dm3] X_5230341_SNP [dm6]	A	G	5.890e^-5	0.988	INTRON rg & 1 other
3L	16199996	3L_16199996_SNP [dm3] 3L_16206896_SNP [dm6]	A	C	5.942e^-5	0.988	INTERGENIC
2L	6142692	2L_6142692_SNP [dm3] 2L_6142692_SNP [dm6]	G	A	6.023e^-5	0.988	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12196934	2R_12196934_SNP [dm3] 2R_16309429_SNP [dm6]	A	C	6.054e^-5	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	1876017	X_1876017_SNP [dm3] X_1981984_SNP [dm6]	T	G	6.068e^-5	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo
3L	13885333	3L_13885333_SNP [dm3] 3L_13892233_SNP [dm6]	C	T	6.105e^-5	0.988	INTRON dysc
3L	20789591	3L_20789591_SNP [dm3] 3L_20796491_SNP [dm6]	T	C	6.123e^-5	0.988	UPSTREAM CR43705 DOWNSTREAM CG3698 EXON CR43706	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13047425	2R_13047425_INS [dm3] 2R_17159920_INS [dm6]	G	GAAAGTGAAAG...	6.324e^-5	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
X	6758077	X_6758077_SNP [dm3] X_6864044_SNP [dm6]	A	G	6.333e^-5	0.988	UTR_5_PRIME CG43736 UPSTREAM CG43736 DOWNSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12087692	2R_12087692_SNP [dm3] 2R_16200187_SNP [dm6]	T	C	6.353e^-5	0.988	SYNONYMOUS_CODING shark DOWNSTREAM CG42837 & 1 other	TF binding site mE1_TFBS_chinmo
X	4387775	X_4387775_SNP [dm3] X_4493742_SNP [dm6]	A	G	6.399e^-5	0.988	INTRON CR32773
2R	7328385	2R_7328385_SNP [dm3] 2R_11440880_SNP [dm6]	C	A	6.449e^-5	0.988	INTRON CG7777
3R	17008897	3R_17008897_SNP [dm3] 3R_21183175_SNP [dm6]	T	A	6.468e^-5	0.988	INTRON SNF4Agamma
2R	19813792	2R_19813792_SNP [dm3] 2R_23926269_SNP [dm6]	T	C	6.482e^-5	0.988	SPLICE_SITE_REGION CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10144553	3L_10144553_SNP [dm3] 3L_10151453_SNP [dm6]	G	T	6.573e^-5	0.988	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	24245721	3R_24245721_SNP [dm3] 3R_28419999_SNP [dm6]	T	A	6.614e^-5	0.988	INTRON beat-VI
3R	21749580	3R_21749580_SNP [dm3] 3R_25923858_SNP [dm6]	T	C	6.643e^-5	0.988	UTR_3_PRIME CCAP-R
2R	9450301	2R_9450301_SNP [dm3] 2R_13562796_SNP [dm6]	T	A	6.666e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	14406610	X_14406610_SNP [dm3] X_14512577_SNP [dm6]	A	T	6.693e^-5	0.988	INTERGENIC
X	15524229	X_15524229_SNP [dm3] X_15630196_SNP [dm6]	C	T	6.752e^-5	0.988	INTRON sog
2R	13047412	2R_13047412_SNP [dm3] 2R_17159907_SNP [dm6]	T	A	6.886e^-5	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2L	5089485	2L_5089485_SNP [dm3] 2L_5089485_SNP [dm6]	C	A	6.909e^-5	0.988	INTRON pgant5
3R	24970045	3R_24970045_SNP [dm3] 3R_29144323_SNP [dm6]	C	T	6.954e^-5	0.988	SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9686122	X_9686122_SNP [dm3] X_9792089_SNP [dm6]	G	T	7.071e^-5	0.988	INTRON CG32698
2L	14416640	2L_14416640_SNP [dm3] 2L_14416640_SNP [dm6]	A	G	7.148e^-5	0.988	DOWNSTREAM Pburs INTERGENIC
3L	5266323	3L_5266323_SNP [dm3] 3L_5273223_SNP [dm6]	T	A	7.178e^-5	0.988	UTR_5_PRIME shep INTRON shep
2L	6118622	2L_6118622_SNP [dm3] 2L_6118622_SNP [dm6]	T	C	7.196e^-5	0.988	INTRON stai & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	24358236	3R_24358236_SNP [dm3] 3R_28532514_SNP [dm6]	G	T	7.256e^-5	0.988	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3L	19170214	3L_19170214_SNP [dm3] 3L_19177114_SNP [dm6]	T	G	7.260e^-5	0.988	INTRON fz2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18870193	2R_18870193_SNP [dm3] 2R_22982670_SNP [dm6]	T	G	7.271e^-5	0.988	NON_SYNONYMOUS_CODING CG32834
2L	10565836	2L_10565836_SNP [dm3] 2L_10565836_SNP [dm6]	G	C	7.349e^-5	0.988	INTRON Trim9
3L	3800822	3L_3800822_SNP [dm3] 3L_3800822_SNP [dm6]	T	A	7.440e^-5	0.988	UTR_5_PRIME CG32264 INTRON CG32264
3R	18818785	3R_18818785_SNP [dm3] 3R_22993063_SNP [dm6]	G	T	7.572e^-5	0.988	INTRON Nha2
2R	7327863	2R_7327863_SNP [dm3] 2R_11440358_SNP [dm6]	A	T	7.700e^-5	0.988	INTRON CG7777
X	14603308	X_14603308_SNP [dm3] X_14709275_SNP [dm6]	A	G	7.701e^-5	0.988	INTRON NetB
X	1887872	X_1887872_SNP [dm3] X_1993839_SNP [dm6]	T	G	7.821e^-5	0.988	NON_SYNONYMOUS_CODING Hr4 INTRON Hr4	TF binding site mE1_TFBS_chinmo
3R	17637561	3R_17637561_SNP [dm3] 3R_21811839_SNP [dm6]	G	C	7.836e^-5	0.988	INTRON CASK
2R	13047503	2R_13047503_DEL [dm3] 2R_17159998_DEL [dm6]	TTCTAAACT	T	7.957e^-5	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3L	6713124	3L_6713124_MNP [dm3] 3L_6720024_MNP [dm6]	CCA	GTT	8.014e^-5	0.988	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
3L	6713130	3L_6713130_SNP [dm3] 3L_6720030_SNP [dm6]	C	A	8.106e^-5	0.988	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
2R	10591647	2R_10591647_DEL [dm3] 2R_14704142_DEL [dm6]	TT	C	8.194e^-5	0.988	INTRON mspo
2R	9355654	2R_9355654_SNP [dm3] 2R_13468149_SNP [dm6]	G	A	8.224e^-5	0.988	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	10546797	3L_10546797_SNP [dm3] 3L_10553697_SNP [dm6]	A	G	8.246e^-5	0.988	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	21237645	3R_21237645_SNP [dm3] 3R_25411923_SNP [dm6]	C	G	8.338e^-5	0.988	INTRON Fur1
3L	18539365	3L_18539365_SNP [dm3] 3L_18546265_SNP [dm6]	C	A	8.344e^-5	0.988	INTERGENIC
3R	26742382	3R_26742382_SNP [dm3] 3R_30916660_SNP [dm6]	C	T	8.389e^-5	0.988	SYNONYMOUS_CODING Ptx1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7353408	2L_7353408_SNP [dm3] 2L_7353408_SNP [dm6]	A	C	8.465e^-5	0.988	DOWNSTREAM Wnt6 INTERGENIC
2R	17539826	2R_17539826_SNP [dm3] 2R_21652321_SNP [dm6]	T	C	8.466e^-5	0.988	UPSTREAM CG30284 INTRON CG10082
3R	18141396	3R_18141396_SNP [dm3] 3R_22315674_SNP [dm6]	C	A	8.622e^-5	0.988	SYNONYMOUS_CODING CG34377
3R	26745198	3R_26745198_DEL [dm3] 3R_30919476_DEL [dm6]	CA	C	8.719e^-5	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10372475	3R_10372475_SNP [dm3] 3R_14546753_SNP [dm6]	A	T	8.797e^-5	0.988	INTRON Pde6
2R	17758504	2R_17758504_DEL [dm3] 2R_21870999_DEL [dm6]	CTTAACATAAGTATTGTTGT...	C	8.944e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	26525937	3R_26525937_SNP [dm3] 3R_30700215_SNP [dm6]	T	A	8.945e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19813777	2R_19813777_SNP [dm3] 2R_23926254_SNP [dm6]	C	T	9.020e^-5	0.988	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7040540	3R_7040540_SNP [dm3] 3R_11214818_SNP [dm6]	C	G	9.074e^-5	0.988	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14960436	3R_14960436_SNP [dm3] 3R_19134714_SNP [dm6]	G	C	9.137e^-5	0.988	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	17526279	2L_17526279_SNP [dm3] 2L_17526279_SNP [dm6]	C	T	9.158e^-5	0.988	SYNONYMOUS_CODING CG15144 DOWNSTREAM Dhc36C	TF binding site mE1_TFBS_cad
X	8832434	X_8832434_SNP [dm3] X_8938401_SNP [dm6]	A	C	9.181e^-5	0.988	INTRON rdgA
X	17073476	X_17073476_SNP [dm3] X_17179443_SNP [dm6]	A	T	9.274e^-5	0.988	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13590693	2R_13590693_SNP [dm3] 2R_17703188_SNP [dm6]	C	T	9.306e^-5	0.988	DOWNSTREAM snoRNA:U31:54Ec & 5 others INTRON Uhg1
2L	4512664	2L_4512664_SNP [dm3] 2L_4512664_SNP [dm6]	G	T	9.439e^-5	0.988	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2439169	3L_2439169_SNP [dm3] 3L_2439169_SNP [dm6]	T	C	9.511e^-5	0.988	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13695045	2L_13695045_SNP [dm3] 2L_13695045_SNP [dm6]	C	T	9.516e^-5	0.988	INTRON CG31814
3R	9784124	3R_9784124_SNP [dm3] 3R_13958402_SNP [dm6]	G	T	9.548e^-5	0.988	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
2R	10580250	2R_10580250_SNP [dm3] 2R_14692745_SNP [dm6]	T	G	9.765e^-5	0.988	INTRON mspo
3L	14196184	3L_14196184_SNP [dm3] 3L_14203084_SNP [dm6]	A	T	9.837e^-5	0.988	UPSTREAM CG32141 INTRON nuf
2L	7036178	2L_7036178_SNP [dm3] 2L_7036178_SNP [dm6]	A	T	9.906e^-5	0.988	SPLICE_SITE_REGION CG11266 INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17637555	3R_17637555_MNP [dm3] 3R_21811833_MNP [dm6]	GGGG	TACT	9.987e^-5	0.988	INTRON CASK
X	6758258	X_6758258_DEL [dm3] X_6864225_DEL [dm6]	CA	C	1.003e^-4	0.988	UTR_5_PRIME CG43736 DOWNSTREAM CR45531 INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25289493	3R_25289493_SNP [dm3] 3R_29463771_SNP [dm6]	C	T	1.005e^-4	0.988	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23285814	3R_23285814_SNP [dm3] 3R_27460092_SNP [dm6]	T	G	1.011e^-4	0.988	INTERGENIC
X	4443394	X_4443394_SNP [dm3] X_4549361_SNP [dm6]	C	G	1.014e^-4	0.988	NON_SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21893008	X_21893008_SNP [dm3] X_22491172_SNP [dm6]	A	T	1.021e^-4	0.988	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
2L	1676109	2L_1676109_SNP [dm3] 2L_1676109_SNP [dm6]	C	T	1.036e^-4	0.988	INTRON chinmo
3L	11369117	3L_11369117_SNP [dm3] 3L_11376017_SNP [dm6]	T	G	1.037e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17008873	3R_17008873_SNP [dm3] 3R_21183151_SNP [dm6]	C	G	1.039e^-4	0.988	INTRON SNF4Agamma
X	1875887	X_1875887_SNP [dm3] X_1981854_SNP [dm6]	G	A	1.046e^-4	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26746456	3R_26746456_SNP [dm3] 3R_30920734_SNP [dm6]	G	A	1.048e^-4	0.988	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	6714741	2R_6714741_SNP [dm3] 2R_10827236_SNP [dm6]	A	G	1.051e^-4	0.988	NON_SYNONYMOUS_CODING CG12325 DOWNSTREAM CG12344
3R	2250249	3R_2250249_SNP [dm3] 3R_6424527_SNP [dm6]	T	C	1.060e^-4	0.988	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3891627	X_3891627_SNP [dm3] X_3997594_SNP [dm6]	G	T	1.063e^-4	0.988	INTERGENIC
3R	26501843	3R_26501843_DEL [dm3] 3R_30676121_DEL [dm6]	GG	G	1.074e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24969025	3R_24969025_SNP [dm3] 3R_29143303_SNP [dm6]	G	A	1.076e^-4	0.988	SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17349463	2R_17349463_SNP [dm3] 2R_21461958_SNP [dm6]	T	C	1.089e^-4	0.988	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
3L	3952864	3L_3952864_SNP [dm3] 3L_3952864_SNP [dm6]	T	C	1.133e^-4	0.988	UPSTREAM CG14984 INTERGENIC
2L	2062609	2L_2062609_SNP [dm3] 2L_2062609_SNP [dm6]	C	T	1.155e^-4	0.988	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2R	7103878	2R_7103878_SNP [dm3] 2R_11216373_SNP [dm6]	A	T	1.159e^-4	0.988	UTR_3_PRIME shn	TF binding site mE1_TFBS_cad
3R	24358105	3R_24358105_SNP [dm3] 3R_28532383_SNP [dm6]	T	G	1.163e^-4	0.988	INTRON Ppn	TF binding site mE1_TFBS_chinmo
2L	7883777	2L_7883777_SNP [dm3] 2L_7883777_SNP [dm6]	A	G	1.173e^-4	0.988	SYNONYMOUS_CODING CG7102
2L	15760700	2L_15760700_INS [dm3] 2L_15760700_INS [dm6]	A	ACAGAATGAA	1.181e^-4	0.988	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5089580	2L_5089580_SNP [dm3] 2L_5089580_SNP [dm6]	C	T	1.196e^-4	0.988	INTRON pgant5
3R	18678896	3R_18678896_SNP [dm3] 3R_22853174_SNP [dm6]	C	A	1.199e^-4	0.988	INTERGENIC
2R	17917645	2R_17917645_SNP [dm3] 2R_22030140_SNP [dm6]	G	T	1.205e^-4	0.988	INTRON CG34370
3L	6481133	3L_6481133_SNP [dm3] 3L_6488033_SNP [dm6]	T	C	1.206e^-4	0.988	SYNONYMOUS_CODING CG10147 UPSTREAM CG8270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13047454	2R_13047454_SNP [dm3] 2R_17159949_SNP [dm6]	G	A	1.212e^-4	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3L	3266820	3L_3266820_SNP [dm3] 3L_3266820_SNP [dm6]	A	C	1.213e^-4	0.988	INTRON ckd	TF binding site BDTNP1_TFBS_dl
2L	17250475	2L_17250475_SNP [dm3] 2L_17250475_SNP [dm6]	T	C	1.222e^-4	0.988	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	10831085	2R_10831085_SNP [dm3] 2R_14943580_SNP [dm6]	G	T	1.230e^-4	0.988	DOWNSTREAM aPKC INTRON CG10257
X	1209575	X_1209575_SNP [dm3] X_1315542_SNP [dm6]	C	A	1.233e^-4	0.988	INTRON DAAM
X	15012136	X_15012136_SNP [dm3] X_15118103_SNP [dm6]	A	G	1.234e^-4	0.988	INTERGENIC
2L	15755343	2L_15755343_SNP [dm3] 2L_15755343_SNP [dm6]	C	T	1.238e^-4	0.988	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3R	12855256	3R_12855256_SNP [dm3] 3R_17029534_SNP [dm6]	T	C	1.243e^-4	0.988	INTRON CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4482966	2L_4482966_SNP [dm3] 2L_4482966_SNP [dm6]	A	G	1.245e^-4	0.988	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26732145	3R_26732145_SNP [dm3] 3R_30906423_SNP [dm6]	T	C	1.249e^-4	0.988	INTERGENIC
2R	7103779	2R_7103779_SNP [dm3] 2R_11216274_SNP [dm6]	G	A	1.270e^-4	0.988	UTR_3_PRIME shn	TF binding site mE1_TFBS_cad
3R	24357316	3R_24357316_SNP [dm3] 3R_28531594_SNP [dm6]	C	G	1.272e^-4	0.988	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	16168769	2L_16168769_SNP [dm3] 2L_16168769_SNP [dm6]	G	A	1.273e^-4	0.988	INTRON Ca-alpha1D
X	4443812	X_4443812_SNP [dm3] X_4549779_SNP [dm6]	T	C	1.281e^-4	0.988	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12792258	3L_12792258_SNP [dm3] 3L_12799158_SNP [dm6]	T	G	1.285e^-4	0.988	INTRON Atg1
2L	14971407	2L_14971407_SNP [dm3] 2L_14971407_SNP [dm6]	A	G	1.287e^-4	0.988	INTRON CG42313
2R	10831074	2R_10831074_SNP [dm3] 2R_14943569_SNP [dm6]	T	C	1.299e^-4	0.988	DOWNSTREAM aPKC INTRON CG10257
X	10966825	X_10966825_SNP [dm3] X_11072792_SNP [dm6]	C	G	1.318e^-4	0.988	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	17637588	3R_17637588_SNP [dm3] 3R_21811866_SNP [dm6]	C	G	1.323e^-4	0.988	INTRON CASK
3R	17637563	3R_17637563_SNP [dm3] 3R_21811841_SNP [dm6]	G	C	1.324e^-4	0.988	INTRON CASK
2L	13149426	2L_13149426_INS [dm3] 2L_13149426_INS [dm6]	G	GT	1.327e^-4	0.988	INTERGENIC
2R	17070798	2R_17070798_SNP [dm3] 2R_21183293_SNP [dm6]	C	T	1.328e^-4	0.988	UPSTREAM tud & 1 other DOWNSTREAM Pu & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18539257	3L_18539257_SNP [dm3] 3L_18546157_SNP [dm6]	T	A	1.330e^-4	0.988	INTERGENIC
X	21889661	X_21889661_SNP [dm3] X_22487825_SNP [dm6]	G	C	1.332e^-4	0.988	DOWNSTREAM CR43493 & 1 other INTRON l_1_G0196
2R	12361698	2R_12361698_SNP [dm3] 2R_16474193_SNP [dm6]	T	C	1.334e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15789961	3R_15789961_SNP [dm3] 3R_19964239_SNP [dm6]	G	A	1.334e^-4	0.988	INTRON Hs6st
2L	14408247	2L_14408247_SNP [dm3] 2L_14408247_SNP [dm6]	G	A	1.340e^-4	0.988	INTRON elB
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	1.341e^-4	0.988	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6713129	3L_6713129_SNP [dm3] 3L_6720029_SNP [dm6]	C	G	1.355e^-4	0.988	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
X	11139818	X_11139818_SNP [dm3] X_11245785_SNP [dm6]	A	G	1.359e^-4	0.988	INTRON CG44422
2L	7615201	2L_7615201_SNP [dm3] 2L_7615201_SNP [dm6]	C	T	1.361e^-4	0.988	SYNONYMOUS_CODING CG6739
2L	16564816	2L_16564816_DEL [dm3] 2L_16564816_DEL [dm6]	ACTGCAGTTGTCA...	A	1.366e^-4	0.988	INTRON CG42389
X	6443990	X_6443990_SNP [dm3] X_6549957_SNP [dm6]	A	G	1.375e^-4	0.988	INTRON CG34417	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14660407	3L_14660407_SNP [dm3] 3L_14667307_SNP [dm6]	A	G	1.387e^-4	0.988	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18164952	X_18164952_SNP [dm3] X_18270919_SNP [dm6]	C	T	1.395e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19475700	2R_19475700_SNP [dm3] 2R_23588177_SNP [dm6]	G	A	1.398e^-4	0.988	INTRON apt
X	1208583	X_1208583_SNP [dm3] X_1314550_SNP [dm6]	C	G	1.399e^-4	0.988	INTRON DAAM	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9223144	X_9223144_SNP [dm3] X_9329111_SNP [dm6]	C	A	1.401e^-4	0.988	NON_SYNONYMOUS_CODING CG34450 INTRON CG34449
X	15012054	X_15012054_SNP [dm3] X_15118021_SNP [dm6]	T	C	1.403e^-4	0.988	INTERGENIC
2R	17070755	2R_17070755_SNP [dm3] 2R_21183250_SNP [dm6]	G	C	1.405e^-4	0.988	UPSTREAM tud & 1 other DOWNSTREAM Pu & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3678772	3L_3678772_SNP [dm3] 3L_3678772_SNP [dm6]	A	G	1.413e^-4	0.988	INTERGENIC
3R	23252558	3R_23252558_SNP [dm3] 3R_27426836_SNP [dm6]	G	C	1.415e^-4	0.988	INTRON side
2L	14361837	2L_14361837_SNP [dm3] 2L_14361837_SNP [dm6]	T	C	1.419e^-4	0.988	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8919049	2R_8919049_SNP [dm3] 2R_13031544_SNP [dm6]	A	G	1.429e^-4	0.988	INTERGENIC
X	6757974	X_6757974_DEL [dm3] X_6863941_DEL [dm6]	GG	G	1.434e^-4	0.988	UTR_5_PRIME CG43736 UPSTREAM CG43736 DOWNSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3955608	3L_3955608_SNP [dm3] 3L_3955608_SNP [dm6]	T	A	1.436e^-4	0.988	UTR_3_PRIME CG12605
2R	16120043	2R_16120043_INS [dm3] 2R_20232538_INS [dm6]	T	TGTGTATGCTT...	1.441e^-4	0.988	SPLICE_SITE_REGION CG11044 UPSTREAM tRNA:G3:56EFb INTRON CG11044
X	3945512	X_3945512_SNP [dm3] X_4051479_SNP [dm6]	A	G	1.444e^-4	0.988	INTERGENIC
3R	17637583	3R_17637583_MNP [dm3] 3R_21811861_MNP [dm6]	CCGC	TGAA	1.448e^-4	0.988	INTRON CASK
3L	3527897	3L_3527897_SNP [dm3] 3L_3527897_SNP [dm6]	C	T	1.457e^-4	0.988	INTRON Eip63E
2L	10565847	2L_10565847_SNP [dm3] 2L_10565847_SNP [dm6]	A	T	1.471e^-4	0.988	INTRON Trim9
3R	23259539	3R_23259539_SNP [dm3] 3R_27433817_SNP [dm6]	G	A	1.480e^-4	0.988	INTRON side
X	2320172	X_2320172_SNP [dm3] X_2426139_SNP [dm6]	C	A	1.483e^-4	0.988	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC	transposable element FlyBase
2R	17748896	2R_17748896_SNP [dm3] 2R_21861391_SNP [dm6]	T	C	1.484e^-4	0.988	SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8676971	X_8676971_SNP [dm3] X_8782938_SNP [dm6]	G	A	1.485e^-4	0.988	INTRON Lim1
X	6758257	X_6758257_SNP [dm3] X_6864224_SNP [dm6]	G	C	1.497e^-4	0.988	UTR_5_PRIME CG43736 DOWNSTREAM CR45531 INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6758487	X_6758487_INS [dm3] X_6864454_INS [dm6]	A	ATGTA	1.503e^-4	0.988	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	5496153	3L_5496153_SNP [dm3] 3L_5503053_SNP [dm6]	G	C	1.506e^-4	0.988	DOWNSTREAM CG34342 INTERGENIC
3R	17637560	3R_17637560_SNP [dm3] 3R_21811838_SNP [dm6]	A	G	1.507e^-4	0.988	INTRON CASK
2R	7328378	2R_7328378_SNP [dm3] 2R_11440873_SNP [dm6]	A	G	1.517e^-4	0.988	INTRON CG7777
3L	10489453	3L_10489453_SNP [dm3] 3L_10496353_SNP [dm6]	T	G	1.531e^-4	0.988	INTRON A2bp1
2L	621033	2L_621033_SNP [dm3] 2L_621033_SNP [dm6]	T	C	1.537e^-4	0.988	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1209463	X_1209463_SNP [dm3] X_1315430_SNP [dm6]	A	G	1.538e^-4	0.988	INTRON DAAM
3R	17637581	3R_17637581_SNP [dm3] 3R_21811859_SNP [dm6]	C	G	1.546e^-4	0.988	INTRON CASK
3R	15561669	3R_15561669_SNP [dm3] 3R_19735947_SNP [dm6]	C	G	1.554e^-4	0.988	INTRON GluClalpha
3R	21237549	3R_21237549_DEL [dm3] 3R_25411827_DEL [dm6]	TCATACTCAAGAATTTTGTG...	T	1.559e^-4	0.988	INTRON Fur1
3L	20793290	3L_20793290_SNP [dm3] 3L_20800190_SNP [dm6]	T	C	1.568e^-4	0.988	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC
3L	10476620	3L_10476620_SNP [dm3] 3L_10483520_SNP [dm6]	A	T	1.577e^-4	0.988	INTRON A2bp1
3L	5306407	3L_5306407_DEL [dm3] 3L_5313307_DEL [dm6]	AA	A	1.580e^-4	0.988	INTERGENIC
X	12549046	X_12549046_SNP [dm3] X_12655013_SNP [dm6]	C	G	1.581e^-4	0.988	INTRON CkIalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13047421	2R_13047421_SNP [dm3] 2R_17159916_SNP [dm6]	A	T	1.592e^-4	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3L	17051763	3L_17051763_SNP [dm3] 3L_17058663_SNP [dm6]	C	A	1.596e^-4	0.988	DOWNSTREAM Rbp6 & 1 other INTERGENIC
X	10095665	X_10095665_SNP [dm3] X_10201632_SNP [dm6]	T	C	1.601e^-4	0.988	INTRON CR44894
2R	19312205	2R_19312205_SNP [dm3] 2R_23424682_SNP [dm6]	G	A	1.604e^-4	0.988	INTRON CG9815	TF binding site mE1_TFBS_chinmo
3R	19076481	3R_19076481_SNP [dm3] 3R_23250759_SNP [dm6]	C	T	1.605e^-4	0.988	SYNONYMOUS_CODING CG4449 UPSTREAM EloA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	12859142	3R_12859142_SNP [dm3] 3R_17033420_SNP [dm6]	A	C	1.609e^-4	0.988	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
X	12230334	X_12230334_SNP [dm3] X_12336301_SNP [dm6]	C	T	1.610e^-4	0.988	INTERGENIC
3R	24357520	3R_24357520_SNP [dm3] 3R_28531798_SNP [dm6]	A	G	1.612e^-4	0.988	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16864800	3R_16864800_SNP [dm3] 3R_21039078_SNP [dm6]	G	T	1.624e^-4	0.988	SYNONYMOUS_CODING Dhc93AB
2L	22188014	2L_22188014_SNP [dm3] 2L_22188014_SNP [dm6]	T	C	1.627e^-4	0.988	INTERGENIC	transposable element FlyBase
2L	5089599	2L_5089599_SNP [dm3] 2L_5089599_SNP [dm6]	G	A	1.628e^-4	0.988	INTRON pgant5
2L	7353106	2L_7353106_SNP [dm3] 2L_7353106_SNP [dm6]	G	A	1.632e^-4	0.988	DOWNSTREAM Wnt6 INTERGENIC
X	7259116	X_7259116_SNP [dm3] X_7365083_SNP [dm6]	G	A	1.642e^-4	0.988	INTRON CG1677 & 1 other
2R	12196913	2R_12196913_SNP [dm3] 2R_16309408_SNP [dm6]	T	C	1.654e^-4	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8790593	3R_8790593_SNP [dm3] 3R_12964871_SNP [dm6]	A	G	1.667e^-4	0.988	NON_SYNONYMOUS_CODING Cyp304a1 INTRON grsm	TF binding site mE1_TFBS_cad
3R	26464190	3R_26464190_SNP [dm3] 3R_30638468_SNP [dm6]	T	C	1.667e^-4	0.988	INTERGENIC
2R	16029206	2R_16029206_SNP [dm3] 2R_20141701_SNP [dm6]	C	T	1.672e^-4	0.988	INTERGENIC
2L	12755988	2L_12755988_SNP [dm3] 2L_12755988_SNP [dm6]	A	C	1.674e^-4	0.988	INTERGENIC
3R	24975278	3R_24975278_SNP [dm3] 3R_29149556_SNP [dm6]	T	C	1.678e^-4	0.988	DOWNSTREAM ligatin INTRON Pglym78	TF binding site mE1_TFBS_chinmo
3R	18128146	3R_18128146_SNP [dm3] 3R_22302424_SNP [dm6]	A	C	1.679e^-4	0.988	INTRON CG7084	TF binding site mE1_TFBS_chinmo
3L	6722518	3L_6722518_SNP [dm3] 3L_6729418_SNP [dm6]	T	C	1.687e^-4	0.988	UTR_3_PRIME dikar DOWNSTREAM CR45417 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17637573	3R_17637573_SNP [dm3] 3R_21811851_SNP [dm6]	T	G	1.688e^-4	0.988	INTRON CASK
3R	17637575	3R_17637575_MNP [dm3] 3R_21811853_MNP [dm6]	CAC	GGG	1.688e^-4	0.988	INTRON CASK
2R	3196739	2R_3196739_SNP [dm3] 2R_7309234_SNP [dm6]	A	C	1.693e^-4	0.988	INTERGENIC
2L	13490687	2L_13490687_SNP [dm3] 2L_13490687_SNP [dm6]	T	A	1.694e^-4	0.988	INTRON CG42784
3R	26744230	3R_26744230_SNP [dm3] 3R_30918508_SNP [dm6]	T	A	1.703e^-4	0.988	INTRON Ptx1	TF binding site mE1_TFBS_cad
2L	989024	2L_989024_SNP [dm3] 2L_989024_SNP [dm6]	C	T	1.706e^-4	0.988	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9646495	X_9646495_SNP [dm3] X_9752462_SNP [dm6]	A	C	1.712e^-4	0.988	INTRON Sp1
3R	12859448	3R_12859448_INS [dm3] 3R_17033726_INS [dm6]	T	TGTGTAAATTAATGAATG...	1.725e^-4	0.988	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
3R	5822630	3R_5822630_SNP [dm3] 3R_9996908_SNP [dm6]	A	G	1.733e^-4	0.988	UPSTREAM Spn85F & 1 other INTERGENIC
3R	17637571	3R_17637571_INS [dm3] 3R_21811849_INS [dm6]	C	CACT	1.736e^-4	0.988	INTRON CASK
2L	14380425	2L_14380425_SNP [dm3] 2L_14380425_SNP [dm6]	A	G	1.738e^-4	0.988	INTRON ppk
3L	5496139	3L_5496139_SNP [dm3] 3L_5503039_SNP [dm6]	A	T	1.748e^-4	0.988	DOWNSTREAM CG34342 INTERGENIC
2R	6781646	2R_6781646_SNP [dm3] 2R_10894141_SNP [dm6]	T	A	1.752e^-4	0.988	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other DOWNSTREAM CG30020	TF binding site BDTNP1_TFBS_dl
2R	13977331	2R_13977331_SNP [dm3] 2R_18089826_SNP [dm6]	C	T	1.760e^-4	0.988	INTRON CG34386
3R	10372397	3R_10372397_SNP [dm3] 3R_14546675_SNP [dm6]	T	C	1.762e^-4	0.988	INTRON Pde6
3L	3678776	3L_3678776_SNP [dm3] 3L_3678776_SNP [dm6]	C	G	1.771e^-4	0.988	INTERGENIC
2R	10580283	2R_10580283_SNP [dm3] 2R_14692778_SNP [dm6]	T	C	1.773e^-4	0.988	INTRON mspo
2R	17136350	2R_17136350_SNP [dm3] 2R_21248845_SNP [dm6]	A	T	1.774e^-4	0.988	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10097032	2R_10097032_INS [dm3] 2R_14209527_INS [dm6]	A	AGAGTTTGGCACATTTCCGG...	1.775e^-4	0.988	INTRON Sox15	regulatory region REDfly_CRMs
3R	24358040	3R_24358040_SNP [dm3] 3R_28532318_SNP [dm6]	T	C	1.790e^-4	0.988	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	26722952	3R_26722952_SNP [dm3] 3R_30897230_SNP [dm6]	G	C	1.794e^-4	0.988	INTRON Cyp4c3
3R	26747929	3R_26747929_SNP [dm3] 3R_30922207_SNP [dm6]	G	A	1.811e^-4	0.988	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26747956	3R_26747956_SNP [dm3] 3R_30922234_SNP [dm6]	C	T	1.811e^-4	0.988	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10271805	2L_10271805_SNP [dm3] 2L_10271805_SNP [dm6]	C	T	1.822e^-4	0.988	SYNONYMOUS_CODING trk DOWNSTREAM Utx & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9222982	X_9222982_SNP [dm3] X_9328949_SNP [dm6]	C	T	1.823e^-4	0.988	DOWNSTREAM CG34450 INTRON CG34449
2L	620996	2L_620996_SNP [dm3] 2L_620996_SNP [dm6]	C	T	1.826e^-4	0.988	NON_SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17665500	3R_17665500_SNP [dm3] 3R_21839778_SNP [dm6]	T	G	1.827e^-4	0.988	INTERGENIC
X	7658243	X_7658243_SNP [dm3] X_7764210_SNP [dm6]	G	A	1.841e^-4	0.988	UPSTREAM Ir7a INTERGENIC
2L	6608789	2L_6608789_SNP [dm3] 2L_6608789_SNP [dm6]	T	G	1.851e^-4	0.988	INTERGENIC
X	1209692	X_1209692_SNP [dm3] X_1315659_SNP [dm6]	T	G	1.852e^-4	0.988	INTRON DAAM
2R	8926920	2R_8926920_SNP [dm3] 2R_13039415_SNP [dm6]	T	C	1.856e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	10831088	2R_10831088_SNP [dm3] 2R_14943583_SNP [dm6]	T	C	1.861e^-4	0.988	DOWNSTREAM aPKC INTRON CG10257
3L	7276777	3L_7276777_SNP [dm3] 3L_7283677_SNP [dm6]	G	A	1.863e^-4	0.988	INTRON unc-13-4A
3R	12858798	3R_12858798_SNP [dm3] 3R_17033076_SNP [dm6]	G	A	1.865e^-4	0.988	SYNONYMOUS_CODING CG31268 UTR_3_PRIME CG31268 DOWNSTREAM CG4009
X	6754828	X_6754828_SNP [dm3] X_6860795_SNP [dm6]	T	C	1.873e^-4	0.988	INTRON CG14434 EXON CR45531	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	6831086	2L_6831086_SNP [dm3] 2L_6831086_SNP [dm6]	A	T	1.874e^-4	0.988	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10580381	2R_10580381_SNP [dm3] 2R_14692876_SNP [dm6]	C	A	1.875e^-4	0.988	INTRON mspo
3L	11216304	3L_11216304_SNP [dm3] 3L_11223204_SNP [dm6]	C	T	1.876e^-4	0.988	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16198323	2R_16198323_SNP [dm3] 2R_20310818_SNP [dm6]	T	C	1.898e^-4	0.988	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10877025	2R_10877025_SNP [dm3] 2R_14989520_SNP [dm6]	T	A	1.899e^-4	0.988	INTRON pcs & 1 other
2R	13047483	2R_13047483_SNP [dm3] 2R_17159978_SNP [dm6]	T	C	1.904e^-4	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3L	18539371	3L_18539371_SNP [dm3] 3L_18546271_SNP [dm6]	C	T	1.908e^-4	0.988	INTERGENIC
3R	26745481	3R_26745481_SNP [dm3] 3R_30919759_SNP [dm6]	T	G	1.917e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	12861402	3R_12861402_SNP [dm3] 3R_17035680_SNP [dm6]	G	A	1.918e^-4	0.988	SYNONYMOUS_CODING CG4009 DOWNSTREAM CG18213	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14361899	2L_14361899_SNP [dm3] 2L_14361899_SNP [dm6]	A	G	1.922e^-4	0.988	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26730991	3R_26730991_DEL [dm3] 3R_30905269_DEL [dm6]	TAT	T	1.923e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26735252	3R_26735252_SNP [dm3] 3R_30909530_SNP [dm6]	C	T	1.934e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26730304	3R_26730304_SNP [dm3] 3R_30904582_SNP [dm6]	C	T	1.939e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4020276	2L_4020276_SNP [dm3] 2L_4020276_SNP [dm6]	C	A	1.942e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	19279958	2L_19279958_SNP [dm3] 2L_19279958_SNP [dm6]	G	A	1.944e^-4	0.988	INTERGENIC
3R	14464803	3R_14464803_SNP [dm3] 3R_18639081_SNP [dm6]	G	A	1.947e^-4	0.988	INTRON qin & 1 other
X	16793549	X_16793549_SNP [dm3] X_16899516_SNP [dm6]	T	G	1.951e^-4	0.988	INTERGENIC
2L	14106338	2L_14106338_SNP [dm3] 2L_14106338_SNP [dm6]	C	T	1.951e^-4	0.988	NON_SYNONYMOUS_CODING CG16879
X	15953758	X_15953758_SNP [dm3] X_16059725_SNP [dm6]	C	G	1.952e^-4	0.988	NON_SYNONYMOUS_CODING Muc14A
3R	26842885	3R_26842885_SNP [dm3] 3R_31017163_SNP [dm6]	T	C	1.965e^-4	0.988	UPSTREAM 5-HT7 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	7882889	2L_7882889_SNP [dm3] 2L_7882889_SNP [dm6]	A	G	1.966e^-4	0.988	DOWNSTREAM CG7102 INTERGENIC
X	1898195	X_1898195_DEL [dm3] X_2004162_DEL [dm6]	AACAACA	A	1.968e^-4	0.988	CODON_DELETION Hr4 UTR_3_PRIME Hr4
X	3210773	X_3210773_SNP [dm3] X_3316740_SNP [dm6]	A	G	1.971e^-4	0.988	UPSTREAM CG10793 INTRON dnc & 1 other
2R	17758464	2R_17758464_SNP [dm3] 2R_21870959_SNP [dm6]	T	A	1.972e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	12811256	3L_12811256_SNP [dm3] 3L_12818156_SNP [dm6]	T	C	1.977e^-4	0.988	SYNONYMOUS_CODING CG42588
2L	4360061	2L_4360061_SNP [dm3] 2L_4360061_SNP [dm6]	T	G	1.984e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	10174925	2L_10174925_SNP [dm3] 2L_10174925_SNP [dm6]	A	G	1.991e^-4	0.988	DOWNSTREAM CG13137 INTRON CG44153
X	1888840	X_1888840_SNP [dm3] X_1994807_SNP [dm6]	A	G	1.992e^-4	0.988	SYNONYMOUS_CODING Hr4 INTRON Hr4
3L	5497266	3L_5497266_SNP [dm3] 3L_5504166_SNP [dm6]	A	G	1.997e^-4	0.988	INTRON CG34342
3R	16236865	3R_16236865_SNP [dm3] 3R_20411143_SNP [dm6]	G	A	1.998e^-4	0.988	SYNONYMOUS_CODING Gfrl
X	1875961	X_1875961_SNP [dm3] X_1981928_SNP [dm6]	G	A	2.014e^-4	0.988	INTRON Hr4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10967808	X_10967808_SNP [dm3] X_11073775_SNP [dm6]	A	G	2.023e^-4	0.988	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	14826608	3R_14826608_SNP [dm3] 3R_19000886_SNP [dm6]	A	G	2.041e^-4	0.988	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19388617	2L_19388617_SNP [dm3] 2L_19388617_SNP [dm6]	G	A	2.042e^-4	0.988	INTRON CG17549
2L	14428616	2L_14428616_SNP [dm3] 2L_14428616_SNP [dm6]	A	C	2.042e^-4	0.988	EXON CR44732	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10816383	2R_10816383_DEL [dm3] 2R_14928878_DEL [dm6]	TAATTA	T	2.045e^-4	0.988	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6873501	3R_6873501_SNP [dm3] 3R_11047779_SNP [dm6]	C	A	2.046e^-4	0.988	NON_SYNONYMOUS_CODING CG34114	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11026376	2R_11026376_SNP [dm3] 2R_15138871_SNP [dm6]	G	T	2.054e^-4	0.988	SYNONYMOUS_CODING chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2318755	X_2318755_SNP [dm3] X_2424722_SNP [dm6]	A	G	2.055e^-4	0.988	DOWNSTREAM CG32797 INTERGENIC
2R	12190425	2R_12190425_SNP [dm3] 2R_16302920_SNP [dm6]	G	A	2.056e^-4	0.988	EXON CR45232
2R	13417626	2R_13417626_SNP [dm3] 2R_17530121_SNP [dm6]	C	T	2.058e^-4	0.988	SYNONYMOUS_CODING Patronin INTRON Patronin
3R	22682250	3R_22682250_SNP [dm3] 3R_26856528_SNP [dm6]	A	T	2.068e^-4	0.988	INTRON Lerp
2R	12196940	2R_12196940_SNP [dm3] 2R_16309435_SNP [dm6]	T	C	2.071e^-4	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	18539388	3L_18539388_SNP [dm3] 3L_18546288_SNP [dm6]	A	C	2.072e^-4	0.988	INTERGENIC
3L	13101476	3L_13101476_SNP [dm3] 3L_13108376_SNP [dm6]	A	T	2.073e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	18686020	3R_18686020_SNP [dm3] 3R_22860298_SNP [dm6]	T	A	2.073e^-4	0.988	INTERGENIC
X	7423886	X_7423886_SNP [dm3] X_7529853_SNP [dm6]	A	G	2.074e^-4	0.988	INTRON CG32719
X	5124352	X_5124352_SNP [dm3] X_5230319_SNP [dm6]	C	T	2.078e^-4	0.988	INTRON rg & 1 other
3R	12858736	3R_12858736_SNP [dm3] 3R_17033014_SNP [dm6]	A	C	2.082e^-4	0.988	NON_SYNONYMOUS_CODING CG31268 UTR_3_PRIME CG31268 DOWNSTREAM CG4009
3R	26733367	3R_26733367_SNP [dm3] 3R_30907645_SNP [dm6]	G	A	2.085e^-4	0.988	INTERGENIC
3L	1454382	3L_1454382_INS [dm3] 3L_1454382_INS [dm6]	T	TT	2.087e^-4	0.988	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	9997242	3R_9997242_SNP [dm3] 3R_14171520_SNP [dm6]	G	A	2.096e^-4	0.988	UTR_3_PRIME Dop1R1
X	5483959	X_5483959_SNP [dm3] X_5589926_SNP [dm6]	A	C	2.103e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14960445	3R_14960445_SNP [dm3] 3R_19134723_SNP [dm6]	A	C	2.108e^-4	0.988	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	620991	2L_620991_SNP [dm3] 2L_620991_SNP [dm6]	T	G	2.114e^-4	0.988	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6758491	X_6758491_SNP [dm3] X_6864458_SNP [dm6]	T	C	2.123e^-4	0.988	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	673384	3L_673384_SNP [dm3] 3L_673384_SNP [dm6]	C	A	2.127e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	6703373	2L_6703373_SNP [dm3] 2L_6703373_SNP [dm6]	G	A	2.128e^-4	0.988	INTRON Tsp
X	12547701	X_12547701_SNP [dm3] X_12653668_SNP [dm6]	A	T	2.139e^-4	0.988	UTR_5_PRIME CkIalpha UPSTREAM CkIalpha DOWNSTREAM Tomosyn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16910881	2R_16910881_SNP [dm3] 2R_21023376_SNP [dm6]	A	T	2.141e^-4	0.988	INTRON RIC-3
3L	1663706	3L_1663706_SNP [dm3] 3L_1663706_SNP [dm6]	T	C	2.142e^-4	0.988	INTRON CG7971	TF binding site BDTNP1_TFBS_dl
3R	20263830	3R_20263830_SNP [dm3] 3R_24438108_SNP [dm6]	G	A	2.154e^-4	0.988	INTRON nAChRalpha1
3L	10547014	3L_10547014_SNP [dm3] 3L_10553914_SNP [dm6]	C	T	2.155e^-4	0.988	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
X	15012133	X_15012133_SNP [dm3] X_15118100_SNP [dm6]	A	G	2.166e^-4	0.988	INTERGENIC
2L	13146439	2L_13146439_SNP [dm3] 2L_13146439_SNP [dm6]	C	G	2.167e^-4	0.988	UPSTREAM CR44199 INTERGENIC
2R	17071127	2R_17071127_SNP [dm3] 2R_21183622_SNP [dm6]	A	G	2.169e^-4	0.988	UTR_5_PRIME tud UPSTREAM tRNA:CR30209 DOWNSTREAM tRNA:G3:57BCb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17625773	X_17625773_SNP [dm3] X_17731740_SNP [dm6]	A	G	2.177e^-4	0.988	INTRON CG42684
3L	18539356	3L_18539356_DEL [dm3] 3L_18546256_DEL [dm6]	ATCAAT	A	2.180e^-4	0.988	INTERGENIC
3L	9523395	3L_9523395_SNP [dm3] 3L_9530295_SNP [dm6]	A	G	2.188e^-4	0.988	SYNONYMOUS_CODING Or67a
2L	14361896	2L_14361896_SNP [dm3] 2L_14361896_SNP [dm6]	A	T	2.195e^-4	0.988	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26748563	3R_26748563_SNP [dm3] 3R_30922841_SNP [dm6]	C	T	2.195e^-4	0.988	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4344103	2L_4344103_SNP [dm3] 2L_4344103_SNP [dm6]	A	T	2.198e^-4	0.988	NON_SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005	TF binding site mE1_TFBS_inv
2R	7501596	2R_7501596_SNP [dm3] 2R_11614091_SNP [dm6]	A	G	2.203e^-4	0.988	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17637565	3R_17637565_SNP [dm3] 3R_21811843_SNP [dm6]	T	C	2.207e^-4	0.988	INTRON CASK
3L	454489	3L_454489_SNP [dm3] 3L_454489_SNP [dm6]	C	G	2.212e^-4	0.988	INTRON klar
2R	17539931	2R_17539931_DEL [dm3] 2R_21652426_DEL [dm6]	TC	T	2.226e^-4	0.988	UPSTREAM CG30284 INTRON CG10082
2R	3031339	2R_3031339_SNP [dm3] 2R_7143834_SNP [dm6]	C	A	2.230e^-4	0.988	INTERGENIC
3R	5821567	3R_5821567_SNP [dm3] 3R_9995845_SNP [dm6]	A	G	2.232e^-4	0.988	SYNONYMOUS_CODING Gr85a DOWNSTREAM Glut4EF
3L	18539367	3L_18539367_SNP [dm3] 3L_18546267_SNP [dm6]	C	T	2.234e^-4	0.988	INTERGENIC
3L	18539376	3L_18539376_MNP [dm3] 3L_18546276_MNP [dm6]	GTC	AAA	2.234e^-4	0.988	INTERGENIC
3L	18539381	3L_18539381_INS [dm3] 3L_18546281_INS [dm6]	T	TAT	2.234e^-4	0.988	INTERGENIC
3L	18539390	3L_18539390_INS [dm3] 3L_18546290_INS [dm6]	A	ATC	2.234e^-4	0.988	INTERGENIC
3L	18539392	3L_18539392_MNP [dm3] 3L_18546292_MNP [dm6]	TTC	AGT	2.234e^-4	0.988	INTERGENIC
2L	15437523	2L_15437523_SNP [dm3] 2L_15437523_SNP [dm6]	A	T	2.235e^-4	0.988	INTERGENIC
3L	2728946	3L_2728946_SNP [dm3] 3L_2728946_SNP [dm6]	G	A	2.239e^-4	0.988	SYNONYMOUS_CODING Mrtf UTR_5_PRIME Mrtf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14195661	3L_14195661_SNP [dm3] 3L_14202561_SNP [dm6]	C	G	2.243e^-4	0.988	UPSTREAM CG32141 INTRON nuf	TF binding site mE1_TFBS_cad
3L	9523378	3L_9523378_SNP [dm3] 3L_9530278_SNP [dm6]	C	T	2.243e^-4	0.988	NON_SYNONYMOUS_CODING Or67a
3R	9865962	3R_9865962_SNP [dm3] 3R_14040240_SNP [dm6]	A	G	2.250e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18984795	X_18984795_SNP [dm3] X_19090762_SNP [dm6]	G	A	2.251e^-4	0.988	INTERGENIC
3L	18539383	3L_18539383_SNP [dm3] 3L_18546283_SNP [dm6]	A	T	2.251e^-4	0.988	INTERGENIC
3L	18539387	3L_18539387_SNP [dm3] 3L_18546287_SNP [dm6]	A	T	2.251e^-4	0.988	INTERGENIC
X	15524324	X_15524324_SNP [dm3] X_15630291_SNP [dm6]	A	T	2.256e^-4	0.988	INTRON sog
3L	18539290	3L_18539290_SNP [dm3] 3L_18546190_SNP [dm6]	A	G	2.258e^-4	0.988	INTERGENIC
3L	10709410	3L_10709410_SNP [dm3] 3L_10716310_SNP [dm6]	T	A	2.261e^-4	0.988	INTERGENIC
3R	26749447	3R_26749447_SNP [dm3] 3R_30923725_SNP [dm6]	C	T	2.265e^-4	0.988	INTRON Ptx1	TF binding site mE1_TFBS_cad
3L	2786325	3L_2786325_SNP [dm3] 3L_2786325_SNP [dm6]	T	G	2.268e^-4	0.988	UTR_3_PRIME CG43444 DOWNSTREAM CG43444 & 1 other	TF binding site mE1_TFBS_HSA
3R	12851851	3R_12851851_SNP [dm3] 3R_17026129_SNP [dm6]	C	T	2.278e^-4	0.988	INTRON Pxd
3R	12851906	3R_12851906_SNP [dm3] 3R_17026184_SNP [dm6]	C	T	2.278e^-4	0.988	SYNONYMOUS_CODING Pxd
3R	12851954	3R_12851954_SNP [dm3] 3R_17026232_SNP [dm6]	C	T	2.278e^-4	0.988	SYNONYMOUS_CODING Pxd
2L	10903502	2L_10903502_SNP [dm3] 2L_10903502_SNP [dm6]	G	A	2.286e^-4	0.988	DOWNSTREAM CR45724 INTERGENIC
2L	15437433	2L_15437433_SNP [dm3] 2L_15437433_SNP [dm6]	C	T	2.304e^-4	0.988	INTERGENIC
3L	1625524	3L_1625524_SNP [dm3] 3L_1625524_SNP [dm6]	A	G	2.313e^-4	0.988	SYNONYMOUS_CODING GC DOWNSTREAM CG13928	TF binding site mE1_TFBS_cad
2R	10580280	2R_10580280_SNP [dm3] 2R_14692775_SNP [dm6]	A	G	2.315e^-4	0.988	INTRON mspo
2L	9797904	2L_9797904_SNP [dm3] 2L_9797904_SNP [dm6]	G	A	2.318e^-4	0.988	SPLICE_SITE_REGION nAChRalpha6 INTRON nAChRalpha6
2L	14380527	2L_14380527_SNP [dm3] 2L_14380527_SNP [dm6]	G	C	2.323e^-4	0.988	INTRON ppk
2L	7610420	2L_7610420_SNP [dm3] 2L_7610420_SNP [dm6]	C	T	2.329e^-4	0.988	INTRON CG6739
2R	10095923	2R_10095923_SNP [dm3] 2R_14208418_SNP [dm6]	T	C	2.329e^-4	0.988	INTRON Sox15	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9821313	3R_9821313_SNP [dm3] 3R_13995591_SNP [dm6]	C	A	2.331e^-4	0.988	INTRON rdx
2L	14112166	2L_14112166_SNP [dm3] 2L_14112166_SNP [dm6]	C	T	2.331e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26639419	3R_26639419_SNP [dm3] 3R_30813697_SNP [dm6]	T	A	2.331e^-4	0.988	INTRON cindr	TF binding site mE1_TFBS_HSA
2L	17057558	2L_17057558_SNP [dm3] 2L_17057558_SNP [dm6]	T	C	2.344e^-4	0.988	INTERGENIC
X	7882930	X_7882930_SNP [dm3] X_7988897_SNP [dm6]	A	C	2.348e^-4	0.988	INTERGENIC
3L	16758400	3L_16758400_SNP [dm3] 3L_16765300_SNP [dm6]	T	C	2.351e^-4	0.988	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9641740	2R_9641740_SNP [dm3] 2R_13754235_SNP [dm6]	A	T	2.365e^-4	0.988	UTR_5_PRIME CG6280
3R	21732732	3R_21732732_SNP [dm3] 3R_25907010_SNP [dm6]	G	A	2.366e^-4	0.988	UPSTREAM CG42235 & 1 other INTERGENIC
3L	9523391	3L_9523391_SNP [dm3] 3L_9530291_SNP [dm6]	T	A	2.370e^-4	0.988	NON_SYNONYMOUS_CODING Or67a
2R	17751047	2R_17751047_SNP [dm3] 2R_21863542_SNP [dm6]	A	T	2.378e^-4	0.988	INTERGENIC
3R	25432591	3R_25432591_SNP [dm3] 3R_29606869_SNP [dm6]	C	T	2.383e^-4	0.988	INTRON alph
2L	955924	2L_955924_SNP [dm3] 2L_955924_SNP [dm6]	A	G	2.383e^-4	0.988	INTRON CG4341
2L	16564834	2L_16564834_SNP [dm3] 2L_16564834_SNP [dm6]	A	C	2.387e^-4	0.988	INTRON CG42389
X	7320369	X_7320369_DEL [dm3] X_7426336_DEL [dm6]	ATA	A	2.403e^-4	0.988	UPSTREAM CG32726 INTERGENIC
X	4292883	X_4292883_DEL [dm3] X_4398850_DEL [dm6]	ATTTGTTG	A	2.416e^-4	0.988	INTRON CR32773
X	19231123	X_19231123_DEL [dm3] X_19337090_DEL [dm6]	AG	A	2.427e^-4	0.988	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3L	20793314	3L_20793314_SNP [dm3] 3L_20800214_SNP [dm6]	G	T	2.429e^-4	0.988	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC
3L	16150536	3L_16150536_SNP [dm3] 3L_16157436_SNP [dm6]	T	C	2.431e^-4	0.988	INTRON CG5151
3L	3630740	3L_3630740_SNP [dm3] 3L_3630740_SNP [dm6]	A	G	2.437e^-4	0.988	INTRON dar1
3R	7874948	3R_7874948_SNP [dm3] 3R_12049226_SNP [dm6]	G	T	2.445e^-4	0.988	UPSTREAM CG14739 INTERGENIC
2L	3876938	2L_3876938_SNP [dm3] 2L_3876938_SNP [dm6]	T	A	2.448e^-4	0.988	INTRON capu
2L	3876953	2L_3876953_SNP [dm3] 2L_3876953_SNP [dm6]	C	T	2.448e^-4	0.988	INTRON capu
3L	18539368	3L_18539368_SNP [dm3] 3L_18546268_SNP [dm6]	C	A	2.464e^-4	0.988	INTERGENIC
3R	12853998	3R_12853998_SNP [dm3] 3R_17028276_SNP [dm6]	T	A	2.486e^-4	0.988	UPSTREAM CG5225 DOWNSTREAM Pxd INTERGENIC
2L	15729616	2L_15729616_SNP [dm3] 2L_15729616_SNP [dm6]	G	A	2.490e^-4	0.988	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12858743	3R_12858743_SNP [dm3] 3R_17033021_SNP [dm6]	T	C	2.494e^-4	0.988	NON_SYNONYMOUS_CODING CG31268 UTR_3_PRIME CG31268 DOWNSTREAM CG4009
3R	12858885	3R_12858885_SNP [dm3] 3R_17033163_SNP [dm6]	C	A	2.494e^-4	0.988	SYNONYMOUS_CODING CG31268 UTR_3_PRIME CG31268 DOWNSTREAM CG4009
2L	7353425	2L_7353425_SNP [dm3] 2L_7353425_SNP [dm6]	C	A	2.499e^-4	0.988	DOWNSTREAM Wnt6 INTERGENIC
X	6758102	X_6758102_SNP [dm3] X_6864069_SNP [dm6]	C	T	2.503e^-4	0.988	UTR_5_PRIME CG43736 UPSTREAM CG43736 DOWNSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6425518	X_6425518_SNP [dm3] X_6531485_SNP [dm6]	T	C	2.507e^-4	0.988	DOWNSTREAM snoRNA:Or-CD10 & 1 other INTRON RpL7A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	22273255	X_22273255_SNP [dm3] X_22871419_SNP [dm6]	C	T	2.511e^-4	0.988	INTRON CG42346 & 1 other
3L	10901949	3L_10901949_SNP [dm3] 3L_10908849_SNP [dm6]	C	T	2.513e^-4	0.988	INTERGENIC
2L	15437526	2L_15437526_SNP [dm3] 2L_15437526_SNP [dm6]	A	G	2.518e^-4	0.988	INTERGENIC
3R	23269310	3R_23269310_SNP [dm3] 3R_27443588_SNP [dm6]	A	C	2.520e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19241875	2L_19241875_SNP [dm3] 2L_19241875_SNP [dm6]	T	C	2.520e^-4	0.988	INTERGENIC
3R	26732060	3R_26732060_SNP [dm3] 3R_30906338_SNP [dm6]	G	T	2.523e^-4	0.988	INTERGENIC
2L	4188531	2L_4188531_SNP [dm3] 2L_4188531_SNP [dm6]	C	T	2.535e^-4	0.988	SYNONYMOUS_CODING lectin-24Db UPSTREAM CG31961 DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	9130735	2R_9130735_SNP [dm3] 2R_13243230_SNP [dm6]	G	T	2.538e^-4	0.988	DOWNSTREAM CR45278 INTERGENIC
2R	17576027	2R_17576027_SNP [dm3] 2R_21688522_SNP [dm6]	C	G	2.540e^-4	0.988	UTR_5_PRIME CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl
3L	646259	3L_646259_SNP [dm3] 3L_646259_SNP [dm6]	G	T	2.540e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8685501	X_8685501_INS [dm3] X_8791468_INS [dm6]	G	GAAAGTTGTTG...	2.544e^-4	0.988	INTRON Lim1
2R	10816232	2R_10816232_DEL [dm3] 2R_14928727_DEL [dm6]	TAA	T	2.544e^-4	0.988	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18539406	3L_18539406_SNP [dm3] 3L_18546306_SNP [dm6]	A	T	2.549e^-4	0.988	INTERGENIC
2L	7880561	2L_7880561_SNP [dm3] 2L_7880561_SNP [dm6]	T	A	2.549e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4855638	2L_4855638_SNP [dm3] 2L_4855638_SNP [dm6]	A	T	2.560e^-4	0.988	INTRON pog
3R	9149396	3R_9149396_SNP [dm3] 3R_13323674_SNP [dm6]	T	G	2.561e^-4	0.988	INTERGENIC
3R	23276022	3R_23276022_SNP [dm3] 3R_27450300_SNP [dm6]	C	G	2.578e^-4	0.988	INTERGENIC
X	21889694	X_21889694_SNP [dm3] X_22487858_SNP [dm6]	G	A	2.579e^-4	0.988	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493
X	2347948	X_2347948_SNP [dm3] X_2453915_SNP [dm6]	G	A	2.586e^-4	0.988	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7259684	X_7259684_SNP [dm3] X_7365651_SNP [dm6]	G	A	2.590e^-4	0.988	INTRON CG1677 & 1 other
3L	5496115	3L_5496115_INS [dm3] 3L_5503015_INS [dm6]	G	GGTG	2.599e^-4	0.988	DOWNSTREAM CG34342 INTERGENIC
2L	12754779	2L_12754779_DEL [dm3] 2L_12754779_DEL [dm6]	TCCGCT	T	2.600e^-4	0.988	INTERGENIC
3L	20492033	3L_20492033_SNP [dm3] 3L_20498933_SNP [dm6]	T	C	2.603e^-4	0.988	UPSTREAM CG18281 INTRON CG32425
3R	26737586	3R_26737586_SNP [dm3] 3R_30911864_SNP [dm6]	A	C	2.604e^-4	0.988	UPSTREAM Ptx1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26722541	3R_26722541_SNP [dm3] 3R_30896819_SNP [dm6]	A	C	2.607e^-4	0.988	INTRON Cyp4c3
3R	12848003	3R_12848003_DEL [dm3] 3R_17022281_DEL [dm6]	TAT	T	2.610e^-4	0.988	INTRON Pxd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4025463	3R_4025463_SNP [dm3] 3R_8199741_SNP [dm6]	C	A	2.615e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	15729613	2L_15729613_SNP [dm3] 2L_15729613_SNP [dm6]	A	G	2.620e^-4	0.988	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26730510	3R_26730510_INS [dm3] 3R_30904788_INS [dm6]	A	ATAGT	2.623e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7032878	3R_7032878_SNP [dm3] 3R_11207156_SNP [dm6]	T	C	2.637e^-4	0.988	INTRON cu
3R	26732760	3R_26732760_SNP [dm3] 3R_30907038_SNP [dm6]	A	G	2.637e^-4	0.988	INTERGENIC
X	12230321	X_12230321_SNP [dm3] X_12336288_SNP [dm6]	C	A	2.646e^-4	0.988	INTERGENIC
2R	16135257	2R_16135257_SNP [dm3] 2R_20247752_SNP [dm6]	T	C	2.649e^-4	0.988	UPSTREAM ppk6 DOWNSTREAM CG9864 INTERGENIC
2R	6714928	2R_6714928_SNP [dm3] 2R_10827423_SNP [dm6]	A	T	2.651e^-4	0.988	UTR_3_PRIME CG12325 DOWNSTREAM CG12344
2R	10223168	2R_10223168_SNP [dm3] 2R_14335663_SNP [dm6]	T	C	2.653e^-4	0.988	INTRON Shroom	TF binding site mE1_TFBS_cad
3R	9821265	3R_9821265_SNP [dm3] 3R_13995543_SNP [dm6]	G	C	2.654e^-4	0.988	INTRON rdx
3R	15911192	3R_15911192_DEL [dm3] 3R_20085470_DEL [dm6]	GGCACTATG	G	2.663e^-4	0.988	INTERGENIC
X	15535114	X_15535114_SNP [dm3] X_15641081_SNP [dm6]	T	A	2.669e^-4	0.988	DOWNSTREAM CR44893 INTERGENIC
X	9689792	X_9689792_SNP [dm3] X_9795759_SNP [dm6]	A	G	2.670e^-4	0.988	INTRON CG32698
2R	17748480	2R_17748480_DEL [dm3] 2R_21860975_DEL [dm6]	CTACGAC	C	2.688e^-4	0.988		TF binding site mE1_TFBS_HSA
3L	12009096	3L_12009096_SNP [dm3] 3L_12015996_SNP [dm6]	A	T	2.692e^-4	0.988	INTRON rols	TF binding site BDTNP1_TFBS_da
3R	23278207	3R_23278207_SNP [dm3] 3R_27452485_SNP [dm6]	A	G	2.694e^-4	0.988	INTERGENIC
2R	7103672	2R_7103672_SNP [dm3] 2R_11216167_SNP [dm6]	G	C	2.696e^-4	0.988	NON_SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad
3R	24245640	3R_24245640_SNP [dm3] 3R_28419918_SNP [dm6]	A	T	2.702e^-4	0.988	INTRON beat-VI
3L	10242214	3L_10242214_SNP [dm3] 3L_10249114_SNP [dm6]	T	G	2.706e^-4	0.988	UPSTREAM CR44540 INTERGENIC
X	9467684	X_9467684_SNP [dm3] X_9573651_SNP [dm6]	G	A	2.707e^-4	0.988	SYNONYMOUS_CODING CG32699
2L	22275713	2L_22275713_SNP [dm3] 2L_22275713_SNP [dm6]	C	A	2.712e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12718782	2L_12718782_DEL [dm3] 2L_12718782_DEL [dm6]	AA	A	2.715e^-4	0.988	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12008084	3L_12008084_SNP [dm3] 3L_12014984_SNP [dm6]	C	T	2.719e^-4	0.988	INTRON rols
3L	3607524	3L_3607524_SNP [dm3] 3L_3607524_SNP [dm6]	A	G	2.720e^-4	0.988	SYNONYMOUS_CODING Eip63E
3L	6880143	3L_6880143_SNP [dm3] 3L_6887043_SNP [dm6]	T	C	2.726e^-4	0.988	INTERGENIC
3R	18806835	3R_18806835_SNP [dm3] 3R_22981113_SNP [dm6]	A	C	2.743e^-4	0.988	DOWNSTREAM Nha2 INTERGENIC
2L	15752863	2L_15752863_SNP [dm3] 2L_15752863_SNP [dm6]	G	C	2.749e^-4	0.988	SYNONYMOUS_CODING l_2_35Df	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18539385	3L_18539385_SNP [dm3] 3L_18546285_SNP [dm6]	A	C	2.751e^-4	0.988	INTERGENIC
3L	1531212	3L_1531212_SNP [dm3] 3L_1531212_SNP [dm6]	G	A	2.763e^-4	0.988	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3946257	X_3946257_SNP [dm3] X_4052224_SNP [dm6]	T	A	2.764e^-4	0.988	INTERGENIC
3L	10704646	3L_10704646_SNP [dm3] 3L_10711546_SNP [dm6]	T	A	2.765e^-4	0.988	INTERGENIC
3R	12851058	3R_12851058_SNP [dm3] 3R_17025336_SNP [dm6]	A	G	2.766e^-4	0.988	INTRON Pxd
3R	9987097	3R_9987097_SNP [dm3] 3R_14161375_SNP [dm6]	C	A	2.772e^-4	0.988	INTERGENIC
3R	13647150	3R_13647150_INS [dm3] 3R_17821428_INS [dm6]	T	TT	2.774e^-4	0.988	INTRON tinc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5352797	3R_5352797_SNP [dm3] 3R_9527075_SNP [dm6]	A	G	2.776e^-4	0.988	UTR_3_PRIME CG8176
X	16004313	X_16004313_SNP [dm3] X_16110280_SNP [dm6]	A	G	2.780e^-4	0.988	INTERGENIC
2L	17056611	2L_17056611_SNP [dm3] 2L_17056611_SNP [dm6]	A	C	2.794e^-4	0.988	INTERGENIC
3L	18539295	3L_18539295_SNP [dm3] 3L_18546195_SNP [dm6]	T	G	2.794e^-4	0.988	INTERGENIC
3R	21949838	3R_21949838_DEL [dm3] 3R_26124116_DEL [dm6]	AATGGTG	TTAA	2.799e^-4	0.988	INTRON CG31324
3L	455941	3L_455941_DEL [dm3] 3L_455941_DEL [dm6]	AGA	A	2.803e^-4	0.988	INTRON klar
3L	1625517	3L_1625517_SNP [dm3] 3L_1625517_SNP [dm6]	C	G	2.813e^-4	0.988	NON_SYNONYMOUS_CODING GC DOWNSTREAM CG13928	TF binding site mE1_TFBS_cad
3L	2743681	3L_2743681_SNP [dm3] 3L_2743681_SNP [dm6]	G	C	2.824e^-4	0.988	INTRON Mrtf
3R	17008900	3R_17008900_SNP [dm3] 3R_21183178_SNP [dm6]	T	C	2.825e^-4	0.988	INTRON SNF4Agamma
X	12992789	X_12992789_SNP [dm3] X_13098756_SNP [dm6]	C	T	2.839e^-4	0.988	INTRON CG43313
2R	10096153	2R_10096153_SNP [dm3] 2R_14208648_SNP [dm6]	G	A	2.839e^-4	0.988	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25561808	3R_25561808_SNP [dm3] 3R_29736086_SNP [dm6]	T	A	2.843e^-4	0.988	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598 DOWNSTREAM Kul	TF binding site mE1_TFBS_sens
3R	14826535	3R_14826535_SNP [dm3] 3R_19000813_SNP [dm6]	A	C	2.848e^-4	0.988	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5224467	3R_5224467_SNP [dm3] 3R_9398745_SNP [dm6]	A	G	2.848e^-4	0.988	NON_SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10816227	2R_10816227_SNP [dm3] 2R_14928722_SNP [dm6]	T	C	2.852e^-4	0.988	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26749000	3R_26749000_SNP [dm3] 3R_30923278_SNP [dm6]	G	A	2.856e^-4	0.988	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15012073	X_15012073_SNP [dm3] X_15118040_SNP [dm6]	T	G	2.867e^-4	0.988	INTERGENIC
X	6444000	X_6444000_SNP [dm3] X_6549967_SNP [dm6]	A	C	2.880e^-4	0.988	INTRON CG34417	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16322183	2R_16322183_SNP [dm3] 2R_20434678_SNP [dm6]	C	G	2.889e^-4	0.988	INTRON CG12484
3R	12859812	3R_12859812_SNP [dm3] 3R_17034090_SNP [dm6]	A	T	2.892e^-4	0.988	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2R	13765359	2R_13765359_SNP [dm3] 2R_17877854_SNP [dm6]	T	C	2.895e^-4	0.988	SYNONYMOUS_CODING CG30325 INTRON Elk
3R	24966904	3R_24966904_SNP [dm3] 3R_29141182_SNP [dm6]	T	A	2.899e^-4	0.988	INTRON CG14516
3L	5156857	3L_5156857_SNP [dm3] 3L_5163757_SNP [dm6]	C	A	2.901e^-4	0.988	INTRON shep
2R	10628163	2R_10628163_SNP [dm3] 2R_14740658_SNP [dm6]	G	A	2.904e^-4	0.988	UTR_3_PRIME CG12858
2L	959404	2L_959404_SNP [dm3] 2L_959404_SNP [dm6]	A	T	2.905e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	667983	3L_667983_SNP [dm3] 3L_667983_SNP [dm6]	C	T	2.906e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3966081	2L_3966081_SNP [dm3] 2L_3966081_SNP [dm6]	A	T	2.911e^-4	0.988	INTRON fred
X	17073482	X_17073482_SNP [dm3] X_17179449_SNP [dm6]	T	A	2.914e^-4	0.988	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14416664	2L_14416664_SNP [dm3] 2L_14416664_SNP [dm6]	G	A	2.920e^-4	0.988	DOWNSTREAM Pburs INTERGENIC
3R	21236883	3R_21236883_SNP [dm3] 3R_25411161_SNP [dm6]	A	G	2.922e^-4	0.988	INTRON Fur1
3L	18842209	3L_18842209_SNP [dm3] 3L_18849109_SNP [dm6]	C	T	2.922e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7023635	3R_7023635_SNP [dm3] 3R_11197913_SNP [dm6]	C	T	2.928e^-4	0.988	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12858973	3R_12858973_SNP [dm3] 3R_17033251_SNP [dm6]	T	C	2.941e^-4	0.988	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
3L	2730641	3L_2730641_SNP [dm3] 3L_2730641_SNP [dm6]	C	T	2.945e^-4	0.988	INTRON Mrtf
3R	18440240	3R_18440240_SNP [dm3] 3R_22614518_SNP [dm6]	C	T	2.948e^-4	0.988	UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_sens
X	15953836	X_15953836_SNP [dm3] X_16059803_SNP [dm6]	A	C	2.950e^-4	0.988	NON_SYNONYMOUS_CODING Muc14A
2R	7555479	2R_7555479_SNP [dm3] 2R_11667974_SNP [dm6]	T	C	2.957e^-4	0.988	INTRON Roc2 & 1 other
2L	14380423	2L_14380423_SNP [dm3] 2L_14380423_SNP [dm6]	A	T	2.963e^-4	0.988	INTRON ppk
2R	16120290	2R_16120290_SNP [dm3] 2R_20232785_SNP [dm6]	C	G	2.973e^-4	0.988	UPSTREAM tRNA:G3:56EFb INTRON CG11044
X	3211106	X_3211106_INS [dm3] X_3317073_INS [dm6]	A	AAA	2.984e^-4	0.988	UPSTREAM CG10793 INTRON dnc & 1 other
2L	4328212	2L_4328212_SNP [dm3] 2L_4328212_SNP [dm6]	T	C	3.006e^-4	0.988	INTRON CG16857
3R	26745422	3R_26745422_SNP [dm3] 3R_30919700_SNP [dm6]	C	T	3.010e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16004825	3L_16004825_SNP [dm3] 3L_16011725_SNP [dm6]	A	G	3.016e^-4	0.988	UTR_5_PRIME mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12761323	2L_12761323_SNP [dm3] 2L_12761323_SNP [dm6]	G	C	3.028e^-4	0.988	NON_SYNONYMOUS_CODING CG15483
2R	4746251	2R_4746251_SNP [dm3] 2R_8858746_SNP [dm6]	T	C	3.032e^-4	0.988	INTERGENIC
X	6754217	X_6754217_SNP [dm3] X_6860184_SNP [dm6]	G	A	3.041e^-4	0.988	UPSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6656004	3L_6656004_SNP [dm3] 3L_6662904_SNP [dm6]	C	G	3.043e^-4	0.988	INTERGENIC
2R	10831084	2R_10831084_SNP [dm3] 2R_14943579_SNP [dm6]	T	A	3.045e^-4	0.988	DOWNSTREAM aPKC INTRON CG10257
2R	9584276	2R_9584276_SNP [dm3] 2R_13696771_SNP [dm6]	G	A	3.047e^-4	0.988	INTRON fas
2R	19789369	2R_19789369_SNP [dm3] 2R_23901846_SNP [dm6]	G	A	3.055e^-4	0.988	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7835732	2R_7835732_SNP [dm3] 2R_11948227_SNP [dm6]	T	C	3.061e^-4	0.988	INTRON CG13188
2L	10903505	2L_10903505_SNP [dm3] 2L_10903505_SNP [dm6]	A	C	3.064e^-4	0.988	DOWNSTREAM CR45724 INTERGENIC
2L	14380470	2L_14380470_SNP [dm3] 2L_14380470_SNP [dm6]	A	G	3.064e^-4	0.988	INTRON ppk
2L	14380482	2L_14380482_SNP [dm3] 2L_14380482_SNP [dm6]	T	C	3.064e^-4	0.988	INTRON ppk
3L	15211034	3L_15211034_SNP [dm3] 3L_15217934_SNP [dm6]	G	A	3.064e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16343797	3R_16343797_SNP [dm3] 3R_20518075_SNP [dm6]	T	G	3.065e^-4	0.988	INTERGENIC
X	6759934	X_6759934_DEL [dm3] X_6865901_DEL [dm6]	TTCT	T	3.069e^-4	0.988	INTRON CG43736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12196916	2R_12196916_SNP [dm3] 2R_16309411_SNP [dm6]	A	G	3.077e^-4	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17577260	2R_17577260_SNP [dm3] 2R_21689755_SNP [dm6]	T	C	3.077e^-4	0.988	NON_SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	13505254	2R_13505254_SNP [dm3] 2R_17617749_SNP [dm6]	G	C	3.081e^-4	0.988	UTR_5_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936
3L	14194016	3L_14194016_SNP [dm3] 3L_14200916_SNP [dm6]	G	A	3.083e^-4	0.988	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10410506	2L_10410506_SNP [dm3] 2L_10410506_SNP [dm6]	T	C	3.118e^-4	0.988	DOWNSTREAM CG5355 & 2 others INTERGENIC
3R	15116675	3R_15116675_SNP [dm3] 3R_19290953_SNP [dm6]	T	G	3.122e^-4	0.988	INTERGENIC
X	17309813	X_17309813_SNP [dm3] X_17415780_SNP [dm6]	T	C	3.131e^-4	0.988	UTR_3_PRIME CG8611 INTRON CG8611
2L	14429625	2L_14429625_SNP [dm3] 2L_14429625_SNP [dm6]	T	G	3.135e^-4	0.988	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	18736466	2L_18736466_INS [dm3] 2L_18736466_INS [dm6]	T	AA	3.136e^-4	0.988	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17008896	3R_17008896_SNP [dm3] 3R_21183174_SNP [dm6]	A	C	3.145e^-4	0.988	INTRON SNF4Agamma
2L	623719	2L_623719_SNP [dm3] 2L_623719_SNP [dm6]	A	C	3.160e^-4	0.988	UPSTREAM lectin-21Ca DOWNSTREAM CR44798 & 1 other INTERGENIC
2R	3455852	2R_3455852_SNP [dm3] 2R_7568347_SNP [dm6]	G	A	3.160e^-4	0.988	INTRON Vps13
X	21861772	X_21861772_SNP [dm3] X_22459936_SNP [dm6]	T	G	3.160e^-4	0.988	INTRON CG14619	transposable element FlyBase
2R	12196930	2R_12196930_INS [dm3] 2R_16309425_INS [dm6]	T	TT	3.162e^-4	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14416643	2L_14416643_SNP [dm3] 2L_14416643_SNP [dm6]	G	C	3.162e^-4	0.988	DOWNSTREAM Pburs INTERGENIC
2L	6153830	2L_6153830_SNP [dm3] 2L_6153830_SNP [dm6]	G	T	3.167e^-4	0.988	DOWNSTREAM CG31639 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1561788	3L_1561788_SNP [dm3] 3L_1561788_SNP [dm6]	A	G	3.167e^-4	0.988	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9997243	3R_9997243_SNP [dm3] 3R_14171521_SNP [dm6]	C	T	3.169e^-4	0.988	UTR_3_PRIME Dop1R1
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	3.173e^-4	0.988	INTERGENIC
2R	11899566	2R_11899566_SNP [dm3] 2R_16012061_SNP [dm6]	A	C	3.174e^-4	0.988	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	6144675	2L_6144675_SNP [dm3] 2L_6144675_SNP [dm6]	C	A	3.177e^-4	0.988	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
2R	13795784	2R_13795784_SNP [dm3] 2R_17908279_SNP [dm6]	C	T	3.183e^-4	0.988	INTRON Elk
2R	13047473	2R_13047473_DEL [dm3] 2R_17159968_DEL [dm6]	TCTTC	AG	3.189e^-4	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2R	10580177	2R_10580177_SNP [dm3] 2R_14692672_SNP [dm6]	A	G	3.192e^-4	0.988	INTRON mspo
2L	4188536	2L_4188536_SNP [dm3] 2L_4188536_SNP [dm6]	C	T	3.193e^-4	0.988	NON_SYNONYMOUS_CODING lectin-24Db UPSTREAM CG31961 DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	21915891	2L_21915891_SNP [dm3] 2L_21915891_SNP [dm6]	G	T	3.194e^-4	0.988	UPSTREAM CG11634 & 1 other INTERGENIC
X	12344704	X_12344704_SNP [dm3] X_12450671_SNP [dm6]	G	A	3.195e^-4	0.988	INTRON Pkcdelta
3R	14960441	3R_14960441_SNP [dm3] 3R_19134719_SNP [dm6]	T	C	3.199e^-4	0.988	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	26464113	3R_26464113_SNP [dm3] 3R_30638391_SNP [dm6]	G	A	3.204e^-4	0.988	INTERGENIC
2L	12760049	2L_12760049_SNP [dm3] 2L_12760049_SNP [dm6]	C	T	3.206e^-4	0.988	DOWNSTREAM CG15483 INTERGENIC
X	13574007	X_13574007_SNP [dm3] X_13679974_SNP [dm6]	T	C	3.210e^-4	0.988	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5115296	X_5115296_SNP [dm3] X_5221263_SNP [dm6]	C	T	3.216e^-4	0.988	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
2L	15594586	2L_15594586_SNP [dm3] 2L_15594586_SNP [dm6]	A	T	3.223e^-4	0.988	INTERGENIC
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	3.238e^-4	0.988	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7383226	3L_7383226_DEL [dm3] 3L_7390126_DEL [dm6]	GTTTTCGGATCGG...	G	3.245e^-4	0.988	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19660695	3R_19660695_SNP [dm3] 3R_23834973_SNP [dm6]	T	A	3.251e^-4	0.988	INTRON CG34355
3R	12861078	3R_12861078_SNP [dm3] 3R_17035356_SNP [dm6]	C	A	3.253e^-4	0.988	NON_SYNONYMOUS_CODING CG4009	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	3.253e^-4	0.988	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
X	11139705	X_11139705_SNP [dm3] X_11245672_SNP [dm6]	C	T	3.260e^-4	0.988	INTRON CG44422
3L	10788041	3L_10788041_SNP [dm3] 3L_10794941_SNP [dm6]	A	C	3.261e^-4	0.988	UPSTREAM CR44546 INTERGENIC
2R	19915865	2R_19915865_SNP [dm3] 2R_24028342_SNP [dm6]	A	C	3.273e^-4	0.988	UPSTREAM CG3163 DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11185635	2L_11185635_SNP [dm3] 2L_11185635_SNP [dm6]	G	A	3.277e^-4	0.988	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26745369	3R_26745369_SNP [dm3] 3R_30919647_SNP [dm6]	C	T	3.281e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17192620	X_17192620_SNP [dm3] X_17298587_SNP [dm6]	G	A	3.297e^-4	0.988	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12015730	3L_12015730_SNP [dm3] 3L_12022630_SNP [dm6]	C	A	3.297e^-4	0.988	INTRON rols
2R	16972011	2R_16972011_SNP [dm3] 2R_21084506_SNP [dm6]	T	C	3.299e^-4	0.988	UTR_5_PRIME Treh INTRON Treh	TF binding site mE1_TFBS_cad
3R	19050310	3R_19050310_DEL [dm3] 3R_23224588_DEL [dm6]	AAT	A	3.300e^-4	0.988	INTRON cnc
2R	3031468	2R_3031468_SNP [dm3] 2R_7143963_SNP [dm6]	T	C	3.303e^-4	0.988	INTERGENIC
3R	5838019	3R_5838019_SNP [dm3] 3R_10012297_SNP [dm6]	T	C	3.318e^-4	0.988	NON_SYNONYMOUS_CODING Mical INTRON Mical	TF binding site mE1_TFBS_cad
3R	26745044	3R_26745044_DEL [dm3] 3R_30919322_DEL [dm6]	TC	T	3.319e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16503542	3R_16503542_SNP [dm3] 3R_20677820_SNP [dm6]	T	C	3.320e^-4	0.988	UPSTREAM CR43452 & 1 other EXON CR45024
X	12344763	X_12344763_SNP [dm3] X_12450730_SNP [dm6]	C	G	3.321e^-4	0.988	INTRON Pkcdelta
3R	26516260	3R_26516260_DEL [dm3] 3R_30690538_DEL [dm6]	GG	G	3.322e^-4	0.988	UPSTREAM Spn100A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25543524	3R_25543524_DEL [dm3] 3R_29717802_DEL [dm6]	TG	T	3.323e^-4	0.988	UPSTREAM Obp99b & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	2065560	2L_2065560_SNP [dm3] 2L_2065560_SNP [dm6]	C	T	3.335e^-4	0.988	INTRON dpr3
2R	12196850	2R_12196850_SNP [dm3] 2R_16309345_SNP [dm6]	T	C	3.344e^-4	0.988	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7032847	3R_7032847_SNP [dm3] 3R_11207125_SNP [dm6]	T	C	3.350e^-4	0.988	SYNONYMOUS_CODING cu
2L	13149278	2L_13149278_SNP [dm3] 2L_13149278_SNP [dm6]	C	T	3.360e^-4	0.988	INTERGENIC
3R	22230411	3R_22230411_SNP [dm3] 3R_26404689_SNP [dm6]	G	C	3.364e^-4	0.988	INTERGENIC
2R	18991523	2R_18991523_SNP [dm3] 2R_23104000_SNP [dm6]	A	C	3.365e^-4	0.988	NON_SYNONYMOUS_CODING Gr59d UPSTREAM Gr59c
3L	7565432	3L_7565432_DEL [dm3] 3L_7572332_DEL [dm6]	CAGCGACCACAGATGCACAC...	C	3.375e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16385009	3L_16385009_SNP [dm3] 3L_16391909_SNP [dm6]	G	A	3.375e^-4	0.988	UPSTREAM CG44836 INTRON CG44836
2L	9827421	2L_9827421_SNP [dm3] 2L_9827421_SNP [dm6]	T	A	3.395e^-4	0.988	INTRON nAChRalpha6
2L	6871850	2L_6871850_SNP [dm3] 2L_6871850_SNP [dm6]	C	T	3.412e^-4	0.988	UPSTREAM CR44914 INTRON CR44915
2L	8909981	2L_8909981_SNP [dm3] 2L_8909981_SNP [dm6]	A	C	3.412e^-4	0.988	INTRON CG34398
X	21861771	X_21861771_SNP [dm3] X_22459935_SNP [dm6]	G	A	3.415e^-4	0.988	INTRON CG14619	transposable element FlyBase
3L	14195621	3L_14195621_SNP [dm3] 3L_14202521_SNP [dm6]	A	C	3.421e^-4	0.988	UPSTREAM CG32141 INTRON nuf	TF binding site mE1_TFBS_cad
X	8195565	X_8195565_INS [dm3] X_8301532_INS [dm6]	T	TGTGTTTT	3.429e^-4	0.988	INTRON nAChRalpha3
3R	13651328	3R_13651328_SNP [dm3] 3R_17825606_SNP [dm6]	A	T	3.430e^-4	0.988	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10903503	2L_10903503_SNP [dm3] 2L_10903503_SNP [dm6]	A	G	3.437e^-4	0.988	DOWNSTREAM CR45724 INTERGENIC
X	17192580	X_17192580_SNP [dm3] X_17298547_SNP [dm6]	A	T	3.440e^-4	0.988	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16971541	2R_16971541_SNP [dm3] 2R_21084036_SNP [dm6]	A	G	3.443e^-4	0.988	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_cad
3R	12854411	3R_12854411_SNP [dm3] 3R_17028689_SNP [dm6]	G	A	3.446e^-4	0.988	UPSTREAM CG5225 DOWNSTREAM Pxd INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17569149	2L_17569149_SNP [dm3] 2L_17569149_SNP [dm6]	C	A	3.448e^-4	0.988	INTERGENIC
3R	18490573	3R_18490573_SNP [dm3] 3R_22664851_SNP [dm6]	C	T	3.448e^-4	0.988	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2R	10676245	2R_10676245_SNP [dm3] 2R_14788740_SNP [dm6]	C	T	3.452e^-4	0.988	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26742813	3R_26742813_SNP [dm3] 3R_30917091_SNP [dm6]	G	A	3.452e^-4	0.988	INTRON Ptx1
3L	4557892	3L_4557892_SNP [dm3] 3L_4557892_SNP [dm6]	G	C	3.462e^-4	0.988	UTR_5_PRIME CG42540 INTRON CG42540
2R	13614875	2R_13614875_SNP [dm3] 2R_17727370_SNP [dm6]	A	G	3.479e^-4	0.988	NON_SYNONYMOUS_CODING CG4975 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21718428	3R_21718428_SNP [dm3] 3R_25892706_SNP [dm6]	C	T	3.481e^-4	0.988	SYNONYMOUS_CODING Lnk UTR_3_PRIME Lnk UPSTREAM CG5913	TF binding site mE1_TFBS_cad
3L	11369111	3L_11369111_SNP [dm3] 3L_11376011_SNP [dm6]	T	A	3.481e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16503690	3R_16503690_SNP [dm3] 3R_20677968_SNP [dm6]	G	T	3.485e^-4	0.988	UPSTREAM CR43452 & 1 other DOWNSTREAM CR45024 INTERGENIC
2R	13358028	2R_13358028_SNP [dm3] 2R_17470523_SNP [dm6]	T	C	3.490e^-4	0.988	INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	1870501	X_1870501_SNP [dm3] X_1976468_SNP [dm6]	T	G	3.492e^-4	0.988	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10420712	2L_10420712_SNP [dm3] 2L_10420712_SNP [dm6]	G	T	3.495e^-4	0.988	UTR_3_PRIME pie DOWNSTREAM RfC3
2L	15111866	2L_15111866_SNP [dm3] 2L_15111866_SNP [dm6]	T	A	3.500e^-4	0.988	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	16648929	3L_16648929_SNP [dm3] 3L_16655829_SNP [dm6]	A	G	3.501e^-4	0.988	INTRON Baldspot
2L	13876945	2L_13876945_SNP [dm3] 2L_13876945_SNP [dm6]	C	T	3.506e^-4	0.988	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	16369807	3R_16369807_SNP [dm3] 3R_20544085_SNP [dm6]	T	A	3.506e^-4	0.988	INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8529228	X_8529228_SNP [dm3] X_8635195_SNP [dm6]	G	A	3.508e^-4	0.988	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5800435	2L_5800435_INS [dm3] 2L_5800435_INS [dm6]	G	GCTCAACAAG	3.520e^-4	0.988	UPSTREAM CG9171 DOWNSTREAM CG14005 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	4342389	2L_4342389_SNP [dm3] 2L_4342389_SNP [dm6]	C	T	3.524e^-4	0.988	INTRON Atet	TF binding site mE1_TFBS_HSA
2L	11891073	2L_11891073_SNP [dm3] 2L_11891073_SNP [dm6]	T	A	3.531e^-4	0.988	INTRON Pde1c
3R	5762556	3R_5762556_SNP [dm3] 3R_9936834_SNP [dm6]	C	A	3.544e^-4	0.988	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10586001	2R_10586001_DEL [dm3] 2R_14698496_DEL [dm6]	CTATTG	C	3.544e^-4	0.988	INTRON mspo
3R	23269249	3R_23269249_SNP [dm3] 3R_27443527_SNP [dm6]	C	G	3.552e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	23269315	3R_23269315_SNP [dm3] 3R_27443593_SNP [dm6]	C	G	3.552e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9170750	2R_9170750_SNP [dm3] 2R_13283245_SNP [dm6]	T	C	3.561e^-4	0.988	INTRON Dh31-R
3L	12310530	3L_12310530_SNP [dm3] 3L_12317430_SNP [dm6]	A	C	3.563e^-4	0.988	INTERGENIC
3L	7688413	3L_7688413_SNP [dm3] 3L_7695313_SNP [dm6]	A	T	3.566e^-4	0.988	INTRON CG32373 & 2 others
2R	18991599	2R_18991599_SNP [dm3] 2R_23104076_SNP [dm6]	C	T	3.566e^-4	0.988	SYNONYMOUS_CODING Gr59d UPSTREAM Gr59c
3R	25455700	3R_25455700_SNP [dm3] 3R_29629978_SNP [dm6]	A	T	3.567e^-4	0.988	DOWNSTREAM Dop1R2 INTERGENIC
3R	19165418	3R_19165418_SNP [dm3] 3R_23339696_SNP [dm6]	T	C	3.570e^-4	0.988	INTRON pnt
X	7258895	X_7258895_SNP [dm3] X_7364862_SNP [dm6]	T	C	3.575e^-4	0.988	INTRON CG1677 & 1 other
X	21889690	X_21889690_SNP [dm3] X_22487854_SNP [dm6]	A	C	3.580e^-4	0.988	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493
3R	19177683	3R_19177683_SNP [dm3] 3R_23351961_SNP [dm6]	T	C	3.583e^-4	0.988	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3L	16199861	3L_16199861_SNP [dm3] 3L_16206761_SNP [dm6]	A	G	3.585e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10565655	2L_10565655_SNP [dm3] 2L_10565655_SNP [dm6]	G	C	3.588e^-4	0.988	INTRON Trim9
2R	17870077	2R_17870077_SNP [dm3] 2R_21982572_SNP [dm6]	C	T	3.590e^-4	0.988	INTERGENIC
X	9446867	X_9446867_SNP [dm3] X_9552834_SNP [dm6]	A	G	3.591e^-4	0.988	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12050307	2R_12050307_SNP [dm3] 2R_16162802_SNP [dm6]	A	C	3.600e^-4	0.988	INTRON lbk
2R	10580132	2R_10580132_SNP [dm3] 2R_14692627_SNP [dm6]	T	A	3.622e^-4	0.988	INTRON mspo
3R	26464165	3R_26464165_SNP [dm3] 3R_30638443_SNP [dm6]	C	T	3.641e^-4	0.988	INTERGENIC
3L	10260564	3L_10260564_SNP [dm3] 3L_10267464_SNP [dm6]	A	G	3.649e^-4	0.988	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3L	9186554	3L_9186554_SNP [dm3] 3L_9193454_SNP [dm6]	G	A	3.651e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16198341	2R_16198341_SNP [dm3] 2R_20310836_SNP [dm6]	T	C	3.666e^-4	0.988	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19002525	3R_19002525_SNP [dm3] 3R_23176803_SNP [dm6]	C	A	3.668e^-4	0.988	INTRON Irk1
2L	14593964	2L_14593964_SNP [dm3] 2L_14593964_SNP [dm6]	A	T	3.688e^-4	0.988	INTERGENIC
2L	14416680	2L_14416680_INS [dm3] 2L_14416680_INS [dm6]	T	TAGTT	3.706e^-4	0.988	DOWNSTREAM Pburs INTERGENIC
3L	2729369	3L_2729369_SNP [dm3] 3L_2729369_SNP [dm6]	C	T	3.707e^-4	0.988	SYNONYMOUS_CODING Mrtf UTR_5_PRIME Mrtf	TF binding site mE1_TFBS_chinmo
3L	5493119	3L_5493119_SNP [dm3] 3L_5500019_SNP [dm6]	G	A	3.708e^-4	0.988	EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10823704	2L_10823704_SNP [dm3] 2L_10823704_SNP [dm6]	A	G	3.714e^-4	0.988	INTRON Nos
3L	17914917	3L_17914917_SNP [dm3] 3L_17921817_SNP [dm6]	G	A	3.718e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4969765	3L_4969765_SNP [dm3] 3L_4969765_SNP [dm6]	A	T	3.732e^-4	0.988	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12851877	3R_12851877_SNP [dm3] 3R_17026155_SNP [dm6]	T	C	3.733e^-4	0.988	INTRON Pxd
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	3.740e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	13838132	2L_13838132_SNP [dm3] 2L_13838132_SNP [dm6]	T	C	3.743e^-4	0.988	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2830585	2L_2830585_SNP [dm3] 2L_2830585_SNP [dm6]	T	A	3.758e^-4	0.988	UPSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18795449	3R_18795449_SNP [dm3] 3R_22969727_SNP [dm6]	C	G	3.758e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17527196	2L_17527196_SNP [dm3] 2L_17527196_SNP [dm6]	C	G	3.759e^-4	0.988	NON_SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8763970	3R_8763970_SNP [dm3] 3R_12938248_SNP [dm6]	A	G	3.760e^-4	0.988	INTERGENIC
X	3946251	X_3946251_SNP [dm3] X_4052218_SNP [dm6]	C	T	3.768e^-4	0.988	INTERGENIC
X	3944976	X_3944976_SNP [dm3] X_4050943_SNP [dm6]	A	C	3.789e^-4	0.988	INTERGENIC
X	2318780	X_2318780_SNP [dm3] X_2424747_SNP [dm6]	G	A	3.791e^-4	0.988	DOWNSTREAM CG32797 INTERGENIC
3R	26744635	3R_26744635_SNP [dm3] 3R_30918913_SNP [dm6]	A	G	3.799e^-4	0.988	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14134227	2L_14134227_SNP [dm3] 2L_14134227_SNP [dm6]	G	C	3.804e^-4	0.988	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10097017	2R_10097017_SNP [dm3] 2R_14209512_SNP [dm6]	T	C	3.821e^-4	0.988	INTRON Sox15	regulatory region REDfly_CRMs
2L	17236787	2L_17236787_SNP [dm3] 2L_17236787_SNP [dm6]	T	A	3.821e^-4	0.988	INTRON beat-IIIc
3R	23265967	3R_23265967_SNP [dm3] 3R_27440245_SNP [dm6]	C	T	3.822e^-4	0.988	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	17230537	X_17230537_SNP [dm3] X_17336504_SNP [dm6]	C	G	3.830e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	14944731	2R_14944731_SNP [dm3] 2R_19057226_SNP [dm6]	A	G	3.830e^-4	0.988	INTERGENIC
3R	26731948	3R_26731948_SNP [dm3] 3R_30906226_SNP [dm6]	A	G	3.837e^-4	0.988	INTERGENIC
2R	18582535	2R_18582535_SNP [dm3] 2R_22695030_SNP [dm6]	C	G	3.852e^-4	0.988	SYNONYMOUS_CODING robo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3008219	X_3008219_SNP [dm3] X_3114186_SNP [dm6]	C	A	3.856e^-4	0.988	INTRON kirre
2L	11463764	2L_11463764_INS [dm3] 2L_11463764_INS [dm6]	T	TCATGT	3.868e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1456173	3L_1456173_SNP [dm3] 3L_1456173_SNP [dm6]	T	C	3.875e^-4	0.988	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	19348235	3R_19348235_SNP [dm3] 3R_23522513_SNP [dm6]	T	C	3.882e^-4	0.988	UTR_3_PRIME CG10175 UPSTREAM CG10177 DOWNSTREAM CG10175	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	12853340	3R_12853340_SNP [dm3] 3R_17027618_SNP [dm6]	G	A	3.891e^-4	0.988	INTRON Pxd
3R	17515588	3R_17515588_SNP [dm3] 3R_21689866_SNP [dm6]	G	T	3.899e^-4	0.988	INTRON CG31176
3L	11153761	3L_11153761_SNP [dm3] 3L_11160661_SNP [dm6]	T	C	3.899e^-4	0.988	NON_SYNONYMOUS_CODING CG32082
2L	7036096	2L_7036096_SNP [dm3] 2L_7036096_SNP [dm6]	C	T	3.909e^-4	0.988	INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13768866	2L_13768866_DEL [dm3] 2L_13768866_DEL [dm6]	TGT	T	3.910e^-4	0.988	INTRON TM9SF4
3R	20335500	3R_20335500_SNP [dm3] 3R_24509778_SNP [dm6]	A	G	3.913e^-4	0.988	INTRON nAChRbeta2
3L	1752977	3L_1752977_SNP [dm3] 3L_1752977_SNP [dm6]	A	G	3.914e^-4	0.988	SYNONYMOUS_CODING Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11443268	2R_11443268_SNP [dm3] 2R_15555763_SNP [dm6]	C	T	3.922e^-4	0.988	UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963
3R	26737990	3R_26737990_SNP [dm3] 3R_30912268_SNP [dm6]	A	G	3.926e^-4	0.988	UPSTREAM Ptx1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8714875	2L_8714875_SNP [dm3] 2L_8714875_SNP [dm6]	C	T	3.927e^-4	0.988	UPSTREAM raw INTRON raw
X	9485492	X_9485492_SNP [dm3] X_9591459_SNP [dm6]	C	G	3.938e^-4	0.988	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14404894	X_14404894_SNP [dm3] X_14510861_SNP [dm6]	G	A	3.940e^-4	0.988	INTERGENIC
X	6753160	X_6753160_INS [dm3] X_6859127_INS [dm6]	G	GG	3.946e^-4	0.988	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	454469	3L_454469_SNP [dm3] 3L_454469_SNP [dm6]	A	G	3.951e^-4	0.988	INTRON klar
3R	7029719	3R_7029719_SNP [dm3] 3R_11203997_SNP [dm6]	G	T	3.956e^-4	0.988	INTRON cu
3R	12859493	3R_12859493_SNP [dm3] 3R_17033771_SNP [dm6]	A	C	3.970e^-4	0.988	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
2L	14133695	2L_14133695_SNP [dm3] 2L_14133695_SNP [dm6]	A	T	3.975e^-4	0.988	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5541146	2L_5541146_DEL [dm3] 2L_5541146_DEL [dm6]	AA	A	3.976e^-4	0.988	SPLICE_SITE_REGION Hel25E INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	8655316	2R_8655316_SNP [dm3] 2R_12767811_SNP [dm6]	T	G	3.977e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	13530614	2R_13530614_SNP [dm3] 2R_17643109_SNP [dm6]	C	T	3.998e^-4	0.988	INTERGENIC
2L	5594925	2L_5594925_SNP [dm3] 2L_5594925_SNP [dm6]	C	T	4.011e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12853339	3R_12853339_SNP [dm3] 3R_17027617_SNP [dm6]	T	C	4.011e^-4	0.988	INTRON Pxd
2L	10028615	2L_10028615_SNP [dm3] 2L_10028615_SNP [dm6]	G	A	4.017e^-4	0.988	SYNONYMOUS_CODING CG13127
2R	14851072	2R_14851072_SNP [dm3] 2R_18963567_SNP [dm6]	G	C	4.024e^-4	0.988	INTERGENIC
2L	6201643	2L_6201643_SNP [dm3] 2L_6201643_SNP [dm6]	G	A	4.025e^-4	0.988	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3L	20793221	3L_20793221_DEL [dm3] 3L_20800121_DEL [dm6]	TT	T	4.035e^-4	0.988	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6861309	2R_6861309_SNP [dm3] 2R_10973804_SNP [dm6]	G	A	4.039e^-4	0.988	INTERGENIC
X	9407296	X_9407296_SNP [dm3] X_9513263_SNP [dm6]	A	C	4.040e^-4	0.988	INTRON CG32700
2L	6014416	2L_6014416_SNP [dm3] 2L_6014416_SNP [dm6]	C	T	4.042e^-4	0.988	INTRON H2.0
2L	9827392	2L_9827392_SNP [dm3] 2L_9827392_SNP [dm6]	A	C	4.044e^-4	0.988	INTRON nAChRalpha6
X	6404833	X_6404833_SNP [dm3] X_6510800_SNP [dm6]	C	A	4.060e^-4	0.988	INTRON CG42340	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18999692	2R_18999692_SNP [dm3] 2R_23112169_SNP [dm6]	A	G	4.065e^-4	0.988	UPSTREAM CR44781 INTERGENIC
2L	11400008	2L_11400008_SNP [dm3] 2L_11400008_SNP [dm6]	G	C	4.073e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
3R	9716738	3R_9716738_SNP [dm3] 3R_13891016_SNP [dm6]	G	T	4.074e^-4	0.988	INTERGENIC
2R	16967844	2R_16967844_SNP [dm3] 2R_21080339_SNP [dm6]	T	A	4.080e^-4	0.988	UPSTREAM Treh INTRON Treh
3R	19690932	3R_19690932_SNP [dm3] 3R_23865210_SNP [dm6]	A	C	4.081e^-4	0.988	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3R	17008875	3R_17008875_SNP [dm3] 3R_21183153_SNP [dm6]	A	C	4.083e^-4	0.988	INTRON SNF4Agamma
3R	21725309	3R_21725309_SNP [dm3] 3R_25899587_SNP [dm6]	T	C	4.087e^-4	0.988	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091
3L	20801167	3L_20801167_SNP [dm3] 3L_20808067_SNP [dm6]	G	A	4.105e^-4	0.988	SYNONYMOUS_CODING CG3634	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16967814	2R_16967814_SNP [dm3] 2R_21080309_SNP [dm6]	G	C	4.109e^-4	0.988	UPSTREAM Treh INTRON Treh
X	3008538	X_3008538_SNP [dm3] X_3114505_SNP [dm6]	G	A	4.116e^-4	0.988	INTRON kirre
2R	16444370	2R_16444370_SNP [dm3] 2R_20556865_SNP [dm6]	C	T	4.120e^-4	0.988	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8788307	3R_8788307_SNP [dm3] 3R_12962585_SNP [dm6]	T	A	4.128e^-4	0.988	UPSTREAM grsm INTRON grsm & 1 other
3L	16200015	3L_16200015_DEL [dm3] 3L_16206915_DEL [dm6]	CGTAATATTTATGTC...	C	4.133e^-4	0.988	INTERGENIC
3R	5825761	3R_5825761_SNP [dm3] 3R_10000039_SNP [dm6]	A	G	4.139e^-4	0.988	UTR_3_PRIME CG5359 DOWNSTREAM CG5359 INTRON Spn85F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14850813	2R_14850813_DEL [dm3] 2R_18963308_DEL [dm6]	AA	A	4.139e^-4	0.988	INTERGENIC
2R	10580382	2R_10580382_SNP [dm3] 2R_14692877_SNP [dm6]	G	T	4.142e^-4	0.988	INTRON mspo
X	9646397	X_9646397_SNP [dm3] X_9752364_SNP [dm6]	A	C	4.143e^-4	0.988	INTRON Sp1
2L	6142638	2L_6142638_SNP [dm3] 2L_6142638_SNP [dm6]	G	A	4.168e^-4	0.988	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3934330	2L_3934330_SNP [dm3] 2L_3934330_SNP [dm6]	T	A	4.179e^-4	0.988	INTRON fred
3R	26748876	3R_26748876_SNP [dm3] 3R_30923154_SNP [dm6]	A	G	4.185e^-4	0.988	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19982484	2R_19982484_SNP [dm3] 2R_24094961_SNP [dm6]	T	C	4.186e^-4	0.988	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4239120	3R_4239120_SNP [dm3] 3R_8413398_SNP [dm6]	T	C	4.190e^-4	0.988	INTRON CG45263
3L	10943743	3L_10943743_SNP [dm3] 3L_10950643_SNP [dm6]	C	T	4.194e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17539926	2R_17539926_SNP [dm3] 2R_21652421_SNP [dm6]	A	C	4.196e^-4	0.988	UPSTREAM CG30284 INTRON CG10082
3L	12321012	3L_12321012_SNP [dm3] 3L_12327912_SNP [dm6]	A	T	4.197e^-4	0.988	INTERGENIC
2L	11326300	2L_11326300_INS [dm3] 2L_11326300_INS [dm6]	A	AA	4.200e^-4	0.988	INTERGENIC
3L	17159024	3L_17159024_SNP [dm3] 3L_17165924_SNP [dm6]	G	C	4.201e^-4	0.988	UPSTREAM CR43433 INTRON Rbp6
X	9287938	X_9287938_SNP [dm3] X_9393905_SNP [dm6]	C	T	4.209e^-4	0.988	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8919054	2R_8919054_SNP [dm3] 2R_13031549_SNP [dm6]	T	G	4.210e^-4	0.988	INTERGENIC
2L	14380522	2L_14380522_SNP [dm3] 2L_14380522_SNP [dm6]	T	A	4.218e^-4	0.988	INTRON ppk
2L	17337031	2L_17337031_SNP [dm3] 2L_17337031_SNP [dm6]	A	C	4.224e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12589954	3L_12589954_SNP [dm3] 3L_12596854_SNP [dm6]	A	T	4.226e^-4	0.988	DOWNSTREAM ara INTERGENIC
2R	10816228	2R_10816228_SNP [dm3] 2R_14928723_SNP [dm6]	T	C	4.231e^-4	0.988	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	19685288	X_19685288_INS [dm3] X_19791255_INS [dm6]	A	ACATA	4.237e^-4	0.988	INTERGENIC
X	17194930	X_17194930_SNP [dm3] X_17300897_SNP [dm6]	C	T	4.238e^-4	0.988	UPSTREAM Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18204651	2R_18204651_SNP [dm3] 2R_22317146_SNP [dm6]	A	C	4.259e^-4	0.988	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18204677	2R_18204677_SNP [dm3] 2R_22317172_SNP [dm6]	C	T	4.259e^-4	0.988	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14414720	2R_14414720_SNP [dm3] 2R_18527215_SNP [dm6]	G	C	4.261e^-4	0.988	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14101298	X_14101298_SNP [dm3] X_14207265_SNP [dm6]	A	G	4.262e^-4	0.988	INTRON l_1_G0007 & 1 other
3L	1625516	3L_1625516_SNP [dm3] 3L_1625516_SNP [dm6]	G	T	4.264e^-4	0.988	NON_SYNONYMOUS_CODING GC DOWNSTREAM CG13928	TF binding site mE1_TFBS_cad
2R	10580159	2R_10580159_SNP [dm3] 2R_14692654_SNP [dm6]	G	A	4.267e^-4	0.988	INTRON mspo
2R	14930685	2R_14930685_SNP [dm3] 2R_19043180_SNP [dm6]	T	C	4.274e^-4	0.988	INTERGENIC
3L	19205106	3L_19205106_SNP [dm3] 3L_19212006_SNP [dm6]	C	T	4.277e^-4	0.988	INTRON fz2
3R	17807423	3R_17807423_SNP [dm3] 3R_21981701_SNP [dm6]	G	C	4.284e^-4	0.988	INTRON Eip93F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	26732590	3R_26732590_DEL [dm3] 3R_30906868_DEL [dm6]	AAATCATAAT	A	4.291e^-4	0.988	INTERGENIC
2L	311316	2L_311316_SNP [dm3] 2L_311316_SNP [dm6]	T	A	4.294e^-4	0.988	INTRON Plc21C
2R	6714674	2R_6714674_SNP [dm3] 2R_10827169_SNP [dm6]	A	T	4.303e^-4	0.988	DOWNSTREAM CG12344 INTRON CG12325
2R	11443232	2R_11443232_SNP [dm3] 2R_15555727_SNP [dm6]	A	C	4.307e^-4	0.988	UPSTREAM CG12963 INTRON CG12963
3L	5156832	3L_5156832_SNP [dm3] 3L_5163732_SNP [dm6]	A	C	4.325e^-4	0.988	INTRON shep
3R	12851084	3R_12851084_SNP [dm3] 3R_17025362_SNP [dm6]	A	G	4.328e^-4	0.988	INTRON Pxd
X	12173798	X_12173798_SNP [dm3] X_12279765_SNP [dm6]	G	A	4.335e^-4	0.988	INTRON Ten-a
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	4.339e^-4	0.988	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7339950	2L_7339950_SNP [dm3] 2L_7339950_SNP [dm6]	G	A	4.340e^-4	0.988	INTRON Wnt6	TF binding site mE1_TFBS_Trl
X	5052935	X_5052935_SNP [dm3] X_5158902_SNP [dm6]	A	C	4.344e^-4	0.988	INTRON rg & 1 other
2L	4442414	2L_4442414_SNP [dm3] 2L_4442414_SNP [dm6]	A	C	4.348e^-4	0.988	UTR_5_PRIME CG15432 UPSTREAM CG15432 & 1 other DOWNSTREAM morgue INTRON CG15432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	1450573	3L_1450573_SNP [dm3] 3L_1450573_SNP [dm6]	A	G	4.354e^-4	0.988	INTRON Ptp61F
3R	12859451	3R_12859451_SNP [dm3] 3R_17033729_SNP [dm6]	C	A	4.364e^-4	0.988	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	4.371e^-4	0.988	INTRON CG18769 & 1 other
3L	11060781	3L_11060781_SNP [dm3] 3L_11067681_SNP [dm6]	C	A	4.372e^-4	0.988	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1554042	3L_1554042_SNP [dm3] 3L_1554042_SNP [dm6]	C	G	4.373e^-4	0.988	DOWNSTREAM Cct1 INTRON Cct2	TF binding site mE1_TFBS_cad
2L	13838084	2L_13838084_SNP [dm3] 2L_13838084_SNP [dm6]	G	T	4.391e^-4	0.988	INTRON CenG1A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	22258096	X_22258096_SNP [dm3] X_22856260_SNP [dm6]	A	G	4.393e^-4	0.988	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9646468	X_9646468_SNP [dm3] X_9752435_SNP [dm6]	C	T	4.394e^-4	0.988	INTRON Sp1
2R	4739669	2R_4739669_SNP [dm3] 2R_8852164_SNP [dm6]	T	C	4.407e^-4	0.988	SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo
3L	3267110	3L_3267110_SNP [dm3] 3L_3267110_SNP [dm6]	T	A	4.414e^-4	0.988	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6713249	3L_6713249_DEL [dm3] 3L_6720149_DEL [dm6]	GG	G	4.416e^-4	0.988	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
3L	3132291	3L_3132291_SNP [dm3] 3L_3132291_SNP [dm6]	G	A	4.418e^-4	0.988	INTRON CG11537
3L	2565440	3L_2565440_SNP [dm3] 3L_2565440_SNP [dm6]	T	C	4.426e^-4	0.988	INTRON msn
2L	4140774	2L_4140774_SNP [dm3] 2L_4140774_SNP [dm6]	T	A	4.427e^-4	0.988	INTERGENIC
2R	15573726	2R_15573726_INS [dm3] 2R_19686221_INS [dm6]	A	AA	4.432e^-4	0.988	INTRON CG15128	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10628993	2R_10628993_SNP [dm3] 2R_14741488_SNP [dm6]	G	T	4.445e^-4	0.988	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
3L	5496131	3L_5496131_SNP [dm3] 3L_5503031_SNP [dm6]	A	T	4.446e^-4	0.988	DOWNSTREAM CG34342 INTERGENIC
2R	18991522	2R_18991522_SNP [dm3] 2R_23103999_SNP [dm6]	A	C	4.449e^-4	0.988	NON_SYNONYMOUS_CODING Gr59d UPSTREAM Gr59c
3L	5289878	3L_5289878_SNP [dm3] 3L_5296778_SNP [dm6]	T	C	4.469e^-4	0.988	INTERGENIC
3L	2579194	3L_2579194_SNP [dm3] 3L_2579194_SNP [dm6]	C	T	4.475e^-4	0.988	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6142755	2L_6142755_SNP [dm3] 2L_6142755_SNP [dm6]	A	G	4.476e^-4	0.988	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	7328291	2R_7328291_SNP [dm3] 2R_11440786_SNP [dm6]	C	T	4.489e^-4	0.988	INTRON CG7777
2R	16910694	2R_16910694_SNP [dm3] 2R_21023189_SNP [dm6]	G	T	4.512e^-4	0.988	INTRON RIC-3
2R	15126998	2R_15126998_SNP [dm3] 2R_19239493_SNP [dm6]	A	G	4.512e^-4	0.988	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14113502	2L_14113502_SNP [dm3] 2L_14113502_SNP [dm6]	A	C	4.513e^-4	0.988	INTERGENIC
2R	13504863	2R_13504863_SNP [dm3] 2R_17617358_SNP [dm6]	C	T	4.532e^-4	0.988	NON_SYNONYMOUS_CODING CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site mE1_TFBS_HSA
2R	17576024	2R_17576024_DEL [dm3] 2R_21688519_DEL [dm6]	TT	T	4.544e^-4	0.988	UTR_5_PRIME CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl
X	13696531	X_13696531_DEL [dm3] X_13802498_DEL [dm6]	CGGTTTTATGC...	C	4.549e^-4	0.988	INTRON inaE
2L	21915981	2L_21915981_SNP [dm3] 2L_21915981_SNP [dm6]	C	T	4.550e^-4	0.988	UPSTREAM CG11634 & 1 other INTERGENIC
3R	23275080	3R_23275080_SNP [dm3] 3R_27449358_SNP [dm6]	G	T	4.552e^-4	0.988	INTERGENIC
X	3944413	X_3944413_SNP [dm3] X_4050380_SNP [dm6]	G	C	4.564e^-4	0.988	INTERGENIC
X	15524272	X_15524272_SNP [dm3] X_15630239_SNP [dm6]	C	G	4.573e^-4	0.988	INTRON sog
2R	13130874	2R_13130874_SNP [dm3] 2R_17243369_SNP [dm6]	C	G	4.577e^-4	0.988	INTRON mbl
X	13373064	X_13373064_SNP [dm3] X_13479031_SNP [dm6]	C	T	4.579e^-4	0.988	INTRON Neto
3L	15841572	3L_15841572_SNP [dm3] 3L_15848472_SNP [dm6]	G	T	4.606e^-4	0.988	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	10723426	2R_10723426_SNP [dm3] 2R_14835921_SNP [dm6]	T	G	4.606e^-4	0.988	INTERGENIC
2L	19915232	2L_19915232_SNP [dm3] 2L_19915232_SNP [dm6]	T	A	4.609e^-4	0.988	INTRON sick	TF binding site mE1_TFBS_bab1
X	3008570	X_3008570_SNP [dm3] X_3114537_SNP [dm6]	A	G	4.613e^-4	0.988	INTRON kirre
2L	961528	2L_961528_SNP [dm3] 2L_961528_SNP [dm6]	T	C	4.615e^-4	0.988	INTERGENIC
X	17608901	X_17608901_SNP [dm3] X_17714868_SNP [dm6]	G	A	4.629e^-4	0.988	INTRON CG42684
X	4087069	X_4087069_SNP [dm3] X_4193036_SNP [dm6]	T	C	4.634e^-4	0.988	INTRON Fas2
3R	18806834	3R_18806834_SNP [dm3] 3R_22981112_SNP [dm6]	A	G	4.641e^-4	0.988	DOWNSTREAM Nha2 INTERGENIC
2L	15752872	2L_15752872_SNP [dm3] 2L_15752872_SNP [dm6]	C	T	4.644e^-4	0.988	SYNONYMOUS_CODING l_2_35Df	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19182427	2R_19182427_SNP [dm3] 2R_23294904_SNP [dm6]	A	C	4.645e^-4	0.988	INTERGENIC
X	9446868	X_9446868_SNP [dm3] X_9552835_SNP [dm6]	C	T	4.648e^-4	0.988	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	13419810	3R_13419810_SNP [dm3] 3R_17594088_SNP [dm6]	T	C	4.650e^-4	0.988	UPSTREAM CG7587 INTERGENIC
X	20286969	X_20286969_SNP [dm3] X_20415942_SNP [dm6]	C	T	4.652e^-4	0.988	SYNONYMOUS_CODING Obp19a UPSTREAM Obp19b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9584288	2R_9584288_SNP [dm3] 2R_13696783_SNP [dm6]	C	T	4.657e^-4	0.988	INTRON fas
2R	10877054	2R_10877054_SNP [dm3] 2R_14989549_SNP [dm6]	T	G	4.660e^-4	0.988	SPLICE_SITE_REGION pcs INTRON pcs & 1 other
3L	16199958	3L_16199958_INS [dm3] 3L_16206858_INS [dm6]	A	ACTATATATC	4.666e^-4	0.988	INTERGENIC
X	6424870	X_6424870_SNP [dm3] X_6530837_SNP [dm6]	C	G	4.672e^-4	0.988	DOWNSTREAM RpL7A & 2 others INTERGENIC
X	7195683	X_7195683_SNP [dm3] X_7301650_SNP [dm6]	G	A	4.672e^-4	0.988	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14675026	3L_14675026_SNP [dm3] 3L_14681926_SNP [dm6]	T	C	4.674e^-4	0.988	INTRON ome
2R	9632060	2R_9632060_SNP [dm3] 2R_13744555_SNP [dm6]	A	T	4.675e^-4	0.988	INTRON fas
2L	2677380	2L_2677380_SNP [dm3] 2L_2677380_SNP [dm6]	C	T	4.677e^-4	0.988	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	934194	2L_934194_SNP [dm3] 2L_934194_SNP [dm6]	A	C	4.679e^-4	0.988	INTRON CG4341
2R	3316418	2R_3316418_DEL [dm3] 2R_7428913_DEL [dm6]	TC	A	4.688e^-4	0.988	UPSTREAM CG11145 DOWNSTREAM CR44203 INTRON so	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9202549	3L_9202549_SNP [dm3] 3L_9209449_SNP [dm6]	C	T	4.691e^-4	0.988	UPSTREAM Slc45-1 INTERGENIC
X	9446922	X_9446922_INS [dm3] X_9552889_INS [dm6]	G	GG	4.696e^-4	0.988	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	10489418	3L_10489418_INS [dm3] 3L_10496318_INS [dm6]	G	GG	4.704e^-4	0.988	INTRON A2bp1
2R	9467978	2R_9467978_SNP [dm3] 2R_13580473_SNP [dm6]	T	A	4.710e^-4	0.988	UTR_3_PRIME CG6191 DOWNSTREAM CG6191 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11331913	3L_11331913_SNP [dm3] 3L_11338813_SNP [dm6]	T	C	4.714e^-4	0.988	INTERGENIC
3L	3720532	3L_3720532_SNP [dm3] 3L_3720532_SNP [dm6]	C	T	4.718e^-4	0.988	INTRON CG32264
3R	17110453	3R_17110453_SNP [dm3] 3R_21284731_SNP [dm6]	G	A	4.725e^-4	0.988	DOWNSTREAM CG17298 INTRON SIFaR
3R	10164047	3R_10164047_DEL [dm3] 3R_14338325_DEL [dm6]	CA	C	4.733e^-4	0.988	INTRON NK7.1
3L	6725329	3L_6725329_SNP [dm3] 3L_6732229_SNP [dm6]	G	T	4.733e^-4	0.988	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17588637	2R_17588637_SNP [dm3] 2R_21701132_SNP [dm6]	T	C	4.734e^-4	0.988	UPSTREAM HmgD INTRON HmgZ
2L	3934237	2L_3934237_SNP [dm3] 2L_3934237_SNP [dm6]	C	T	4.737e^-4	0.988	INTRON fred
3R	5822942	3R_5822942_SNP [dm3] 3R_9997220_SNP [dm6]	C	T	4.744e^-4	0.988	UTR_5_PRIME Spn85F UPSTREAM Gr85a
2L	5814361	2L_5814361_SNP [dm3] 2L_5814361_SNP [dm6]	A	C	4.746e^-4	0.988	INTERGENIC
3L	4095782	3L_4095782_SNP [dm3] 3L_4095782_SNP [dm6]	G	A	4.747e^-4	0.988	SYNONYMOUS_CODING CG14995 UTR_3_PRIME CG14995
3L	11804269	3L_11804269_DEL [dm3] 3L_11811169_DEL [dm6]	TTAACAATA	T	4.748e^-4	0.988	INTRON CG42255
2L	11553527	2L_11553527_SNP [dm3] 2L_11553527_SNP [dm6]	G	C	4.748e^-4	0.988	INTERGENIC
2L	9847121	2L_9847121_INS [dm3] 2L_9847121_INS [dm6]	G	GG	4.751e^-4	0.988	INTRON nAChRalpha6
3R	17515587	3R_17515587_SNP [dm3] 3R_21689865_SNP [dm6]	T	G	4.752e^-4	0.988	INTRON CG31176
2L	17153484	2L_17153484_SNP [dm3] 2L_17153484_SNP [dm6]	A	C	4.754e^-4	0.988	INTRON beat-IIIa & 1 other
2L	17320950	2L_17320950_SNP [dm3] 2L_17320950_SNP [dm6]	A	G	4.772e^-4	0.988	UPSTREAM CG45691 INTERGENIC
3R	23272771	3R_23272771_SNP [dm3] 3R_27447049_SNP [dm6]	C	A	4.773e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7876265	2L_7876265_SNP [dm3] 2L_7876265_SNP [dm6]	G	C	4.781e^-4	0.988	INTRON spz3
X	5053694	X_5053694_SNP [dm3] X_5159661_SNP [dm6]	A	T	4.788e^-4	0.988	INTRON rg & 1 other
3R	24970341	3R_24970341_SNP [dm3] 3R_29144619_SNP [dm6]	C	T	4.791e^-4	0.988	INTRON CG14516
3L	18539401	3L_18539401_SNP [dm3] 3L_18546301_SNP [dm6]	C	G	4.793e^-4	0.988	INTERGENIC
2L	15437383	2L_15437383_SNP [dm3] 2L_15437383_SNP [dm6]	T	C	4.796e^-4	0.988	INTERGENIC
3L	9917433	3L_9917433_SNP [dm3] 3L_9924333_SNP [dm6]	T	C	4.796e^-4	0.988	INTRON CG34356
3L	6569252	3L_6569252_SNP [dm3] 3L_6576152_SNP [dm6]	G	A	4.797e^-4	0.988	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	2565453	3L_2565453_SNP [dm3] 3L_2565453_SNP [dm6]	T	C	4.799e^-4	0.988	INTRON msn
2R	15035642	2R_15035642_SNP [dm3] 2R_19148137_SNP [dm6]	C	T	4.808e^-4	0.988	INTRON ena	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12859450	3R_12859450_SNP [dm3] 3R_17033728_SNP [dm6]	C	A	4.812e^-4	0.988	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
2R	11574803	2R_11574803_SNP [dm3] 2R_15687298_SNP [dm6]	G	T	4.815e^-4	0.988	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM Cep89	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12460561	2L_12460561_SNP [dm3] 2L_12460561_SNP [dm6]	G	T	4.818e^-4	0.988	UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4709039	X_4709039_SNP [dm3] X_4815006_SNP [dm6]	G	A	4.818e^-4	0.988	INTERGENIC
2R	4527181	2R_4527181_SNP [dm3] 2R_8639676_SNP [dm6]	T	C	4.819e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	6829581	X_6829581_SNP [dm3] X_6935548_SNP [dm6]	G	T	4.827e^-4	0.988	INTRON CG14431
2R	13047400	2R_13047400_SNP [dm3] 2R_17159895_SNP [dm6]	C	T	4.827e^-4	0.988	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2L	18894639	2L_18894639_SNP [dm3] 2L_18894639_SNP [dm6]	G	A	4.830e^-4	0.988	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
3L	18539260	3L_18539260_SNP [dm3] 3L_18546160_SNP [dm6]	G	A	4.832e^-4	0.988	INTERGENIC
2L	17461190	2L_17461190_DEL [dm3] 2L_17461190_DEL [dm6]	CC	C	4.840e^-4	0.988	UTR_3_PRIME BicD DOWNSTREAM BicD
3L	11264954	3L_11264954_SNP [dm3] 3L_11271854_SNP [dm6]	C	T	4.842e^-4	0.988	INTERGENIC
2L	14407267	2L_14407267_SNP [dm3] 2L_14407267_SNP [dm6]	T	G	4.843e^-4	0.988	INTRON elB
3L	18539348	3L_18539348_SNP [dm3] 3L_18546248_SNP [dm6]	G	A	4.846e^-4	0.988	INTERGENIC
3L	9562634	3L_9562634_SNP [dm3] 3L_9569534_SNP [dm6]	A	G	4.850e^-4	0.988	INTRON CG42673
3L	9433248	3L_9433248_SNP [dm3] 3L_9440148_SNP [dm6]	A	T	4.862e^-4	0.988	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3	transposable element FlyBase
2L	8714922	2L_8714922_MNP [dm3] 2L_8714922_MNP [dm6]	AGTT	TACC	4.863e^-4	0.988	UPSTREAM raw INTRON raw
X	17711907	X_17711907_SNP [dm3] X_17817874_SNP [dm6]	C	A	4.870e^-4	0.988	INTERGENIC
X	1625912	X_1625912_SNP [dm3] X_1731879_SNP [dm6]	A	G	4.874e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4270082	X_4270082_SNP [dm3] X_4376049_SNP [dm6]	A	C	4.894e^-4	0.988	EXON CR45484
2L	4683200	2L_4683200_SNP [dm3] 2L_4683200_SNP [dm6]	A	G	4.896e^-4	0.988	UTR_3_PRIME Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
X	9535975	X_9535975_SNP [dm3] X_9641942_SNP [dm6]	A	G	4.900e^-4	0.988	INTRON l_1_G0232
2L	9276682	2L_9276682_SNP [dm3] 2L_9276682_SNP [dm6]	T	A	4.902e^-4	0.988	INTRON Ggamma30A
3R	18439642	3R_18439642_SNP [dm3] 3R_22613920_SNP [dm6]	A	G	4.912e^-4	0.988	UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9685737	2L_9685737_DEL [dm3] 2L_9685737_DEL [dm6]	AA	A	4.919e^-4	0.988	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3792066	3L_3792066_SNP [dm3] 3L_3792066_SNP [dm6]	A	C	4.920e^-4	0.988	DOWNSTREAM CG32266 INTRON CG32264
3R	12851091	3R_12851091_SNP [dm3] 3R_17025369_SNP [dm6]	G	T	4.927e^-4	0.988	INTRON Pxd
3R	12851114	3R_12851114_SNP [dm3] 3R_17025392_SNP [dm6]	A	C	4.927e^-4	0.988	INTRON Pxd
3L	3677781	3L_3677781_SNP [dm3] 3L_3677781_SNP [dm6]	G	T	4.931e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17158723	2L_17158723_SNP [dm3] 2L_17158723_SNP [dm6]	C	T	4.934e^-4	0.988	SYNONYMOUS_CODING beat-IIIa UTR_5_PRIME CG34106
2R	3031419	2R_3031419_SNP [dm3] 2R_7143914_SNP [dm6]	C	T	4.936e^-4	0.988	INTERGENIC
2L	11397732	2L_11397732_SNP [dm3] 2L_11397732_SNP [dm6]	A	T	4.936e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
X	20305003	X_20305003_SNP [dm3] X_20433976_SNP [dm6]	G	T	4.948e^-4	0.988	UTR_5_PRIME CG1695 DOWNSTREAM mal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24357241	3R_24357241_SNP [dm3] 3R_28531519_SNP [dm6]	G	A	4.950e^-4	0.988	SPLICE_SITE_REGION Ppn SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	12811356	3L_12811356_SNP [dm3] 3L_12818256_SNP [dm6]	A	C	4.951e^-4	0.988	NON_SYNONYMOUS_CODING CG42588
3R	19050314	3R_19050314_SNP [dm3] 3R_23224592_SNP [dm6]	A	C	4.954e^-4	0.988	INTRON cnc
3R	21877488	3R_21877488_SNP [dm3] 3R_26051766_SNP [dm6]	G	A	4.954e^-4	0.988	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	656667	3L_656667_SNP [dm3] 3L_656667_SNP [dm6]	G	A	4.954e^-4	0.988	SYNONYMOUS_CODING Rev1
2R	11899004	2R_11899004_SNP [dm3] 2R_16011499_SNP [dm6]	A	C	4.954e^-4	0.988	UPSTREAM CG8389 & 1 other INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	4062806	2L_4062806_SNP [dm3] 2L_4062806_SNP [dm6]	G	A	4.957e^-4	0.988	INTRON ed
3R	4332706	3R_4332706_SNP [dm3] 3R_8506984_SNP [dm6]	C	G	4.965e^-4	0.988	INTERGENIC
2R	14936263	2R_14936263_SNP [dm3] 2R_19048758_SNP [dm6]	A	G	4.967e^-4	0.988	INTERGENIC
3L	7332558	3L_7332558_SNP [dm3] 3L_7339458_SNP [dm6]	C	G	4.987e^-4	0.988	UTR_5_PRIME lark UPSTREAM lark & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	20056416	X_20056416_SNP [dm3] X_20162383_SNP [dm6]	G	C	4.991e^-4	0.988	SYNONYMOUS_CODING Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20034212	X_20034212_SNP [dm3] X_20140179_SNP [dm6]	G	A	4.997e^-4	0.988	UPSTREAM CG34332 DOWNSTREAM CG42583 INTERGENIC
2L	19386745	2L_19386745_INS [dm3] 2L_19386745_INS [dm6]	A	AAGAACACGATCTTGAAATT...	5.001e^-4	0.988	UPSTREAM fon DOWNSTREAM CG17549 INTERGENIC
2L	6608790	2L_6608790_SNP [dm3] 2L_6608790_SNP [dm6]	G	T	5.028e^-4	0.988	INTERGENIC
3R	2228271	3R_2228271_SNP [dm3] 3R_6402549_SNP [dm6]	A	T	5.032e^-4	0.988	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26726192	3R_26726192_SNP [dm3] 3R_30900470_SNP [dm6]	C	A	5.053e^-4	0.988	NON_SYNONYMOUS_CODING Cyp4c3 DOWNSTREAM CG33483
2L	17056951	2L_17056951_SNP [dm3] 2L_17056951_SNP [dm6]	C	T	5.055e^-4	0.988	INTERGENIC
2R	5898800	2R_5898800_SNP [dm3] 2R_10011295_SNP [dm6]	A	C	5.055e^-4	0.988	DOWNSTREAM mir-4967 INTRON Pka-R2
3R	12856919	3R_12856919_SNP [dm3] 3R_17031197_SNP [dm6]	A	G	5.061e^-4	0.988	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
2L	5925781	2L_5925781_SNP [dm3] 2L_5925781_SNP [dm6]	C	A	5.066e^-4	0.988	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13653065	3R_13653065_DEL [dm3] 3R_17827343_DEL [dm6]	ACTGA	A	5.069e^-4	0.988	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24977490	3R_24977490_SNP [dm3] 3R_29151768_SNP [dm6]	C	G	5.070e^-4	0.988	UTR_5_PRIME ligatin DOWNSTREAM Slbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5033023	3L_5033023_SNP [dm3] 3L_5033023_SNP [dm6]	T	C	5.076e^-4	0.988	INTRON Con	TF binding site mE1_TFBS_inv
3R	14234728	3R_14234728_SNP [dm3] 3R_18409006_SNP [dm6]	T	A	5.078e^-4	0.988	SYNONYMOUS_CODING CG31122	TF binding site mE1_TFBS_inv
3R	14356439	3R_14356439_SNP [dm3] 3R_18530717_SNP [dm6]	C	T	5.090e^-4	0.988	INTRON fru
X	5012133	X_5012133_SNP [dm3] X_5118100_SNP [dm6]	T	A	5.091e^-4	0.988	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2L	16704047	2L_16704047_SNP [dm3] 2L_16704047_SNP [dm6]	T	G	5.093e^-4	0.988	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15110192	2L_15110192_SNP [dm3] 2L_15110192_SNP [dm6]	A	G	5.107e^-4	0.988	NON_SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16967822	2R_16967822_SNP [dm3] 2R_21080317_SNP [dm6]	A	G	5.108e^-4	0.988	UPSTREAM Treh INTRON Treh
X	6758790	X_6758790_SNP [dm3] X_6864757_SNP [dm6]	A	T	5.120e^-4	0.988	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16645450	3L_16645450_SNP [dm3] 3L_16652350_SNP [dm6]	G	A	5.122e^-4	0.988	INTRON Baldspot	TF binding site mE1_TFBS_sens
2L	13875961	2L_13875961_SNP [dm3] 2L_13875961_SNP [dm6]	T	C	5.122e^-4	0.988	INTRON CenG1A
2L	19385383	2L_19385383_SNP [dm3] 2L_19385383_SNP [dm6]	A	G	5.132e^-4	0.988	INTRON fon
X	17199024	X_17199024_SNP [dm3] X_17304991_SNP [dm6]	C	T	5.136e^-4	0.988	UTR_3_PRIME CG5445
2R	11038840	2R_11038840_SNP [dm3] 2R_15151335_SNP [dm6]	C	T	5.139e^-4	0.988	INTERGENIC
2L	14107484	2L_14107484_DEL [dm3] 2L_14107484_DEL [dm6]	TT	T	5.140e^-4	0.988	DOWNSTREAM CG16879 & 1 other INTERGENIC
3R	15509452	3R_15509452_SNP [dm3] 3R_19683730_SNP [dm6]	T	G	5.145e^-4	0.988	INTRON Naam
2L	10222730	2L_10222730_SNP [dm3] 2L_10222730_SNP [dm6]	A	G	5.148e^-4	0.988	UTR_5_PRIME CG4908 DOWNSTREAM Prosalpha6 INTRON CG4908	TF binding site BDTNP1_TFBS_dl
2L	8714931	2L_8714931_SNP [dm3] 2L_8714931_SNP [dm6]	T	C	5.149e^-4	0.988	UPSTREAM raw INTRON raw
3R	5352892	3R_5352892_SNP [dm3] 3R_9527170_SNP [dm6]	A	G	5.152e^-4	0.988	UTR_3_PRIME CG8176
2L	15752971	2L_15752971_SNP [dm3] 2L_15752971_SNP [dm6]	T	G	5.157e^-4	0.988	SYNONYMOUS_CODING l_2_35Df	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12008091	3L_12008091_SNP [dm3] 3L_12014991_SNP [dm6]	C	T	5.166e^-4	0.988	INTRON rols
3L	19119134	3L_19119134_SNP [dm3] 3L_19126034_SNP [dm6]	C	T	5.166e^-4	0.988	INTRON CG14082
3R	17008638	3R_17008638_SNP [dm3] 3R_21182916_SNP [dm6]	A	G	5.169e^-4	0.988	INTRON SNF4Agamma
2L	8588321	2L_8588321_SNP [dm3] 2L_8588321_SNP [dm6]	T	A	5.169e^-4	0.988	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9021514	X_9021514_SNP [dm3] X_9127481_SNP [dm6]	G	A	5.173e^-4	0.988	INTRON fend	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	18598204	3L_18598204_SNP [dm3] 3L_18605104_SNP [dm6]	A	T	5.176e^-4	0.988	NON_SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
2R	9144871	2R_9144871_SNP [dm3] 2R_13257366_SNP [dm6]	C	A	5.178e^-4	0.988	UTR_3_PRIME CG4716 UPSTREAM CG10799 DOWNSTREAM CG4716
X	10840807	X_10840807_SNP [dm3] X_10946774_SNP [dm6]	T	C	5.184e^-4	0.988	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	11341147	2R_11341147_SNP [dm3] 2R_15453642_SNP [dm6]	T	C	5.185e^-4	0.988	INTRON CG43729
2R	20875371	2R_20875371_SNP [dm3] 2R_24987848_SNP [dm6]	A	G	5.187e^-4	0.988	INTRON CG3829	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8715015	2L_8715015_SNP [dm3] 2L_8715015_SNP [dm6]	T	A	5.189e^-4	0.988	UPSTREAM raw INTRON raw
X	1325474	X_1325474_MNP [dm3] X_1431441_MNP [dm6]	CCACCGC	TCTAGCT	5.192e^-4	0.988	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	14101553	2L_14101553_SNP [dm3] 2L_14101553_SNP [dm6]	A	T	5.212e^-4	0.988	INTERGENIC
2L	1676324	2L_1676324_SNP [dm3] 2L_1676324_SNP [dm6]	G	T	5.213e^-4	0.988	INTRON chinmo
2L	775604	2L_775604_SNP [dm3] 2L_775604_SNP [dm6]	C	T	5.215e^-4	0.988	UPSTREAM CG13946 INTERGENIC
2L	7686832	2L_7686832_SNP [dm3] 2L_7686832_SNP [dm6]	T	G	5.217e^-4	0.988	SYNONYMOUS_CODING Myo28B1
3R	12859828	3R_12859828_SNP [dm3] 3R_17034106_SNP [dm6]	T	G	5.217e^-4	0.988	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
3R	8736646	3R_8736646_SNP [dm3] 3R_12910924_SNP [dm6]	C	G	5.224e^-4	0.988	NON_SYNONYMOUS_CODING CG10909
3R	7021479	3R_7021479_SNP [dm3] 3R_11195757_SNP [dm6]	T	A	5.233e^-4	0.988	UPSTREAM CG18577 INTERGENIC
2L	10268573	2L_10268573_SNP [dm3] 2L_10268573_SNP [dm6]	A	T	5.242e^-4	0.988	UTR_3_PRIME CG4953 UPSTREAM CG4957
2L	4043922	2L_4043922_SNP [dm3] 2L_4043922_SNP [dm6]	C	G	5.252e^-4	0.988	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	6725275	3L_6725275_SNP [dm3] 3L_6732175_SNP [dm6]	T	C	5.254e^-4	0.988	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13369667	X_13369667_SNP [dm3] X_13475634_SNP [dm6]	A	T	5.254e^-4	0.988	INTRON Neto
2R	17751343	2R_17751343_SNP [dm3] 2R_21863838_SNP [dm6]	C	A	5.254e^-4	0.988	INTERGENIC
X	3528281	X_3528281_SNP [dm3] X_3634248_SNP [dm6]	A	G	5.257e^-4	0.988	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6610912	2L_6610912_SNP [dm3] 2L_6610912_SNP [dm6]	T	C	5.258e^-4	0.988	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	6276524	3L_6276524_SNP [dm3] 3L_6283424_SNP [dm6]	C	A	5.258e^-4	0.988	INTERGENIC
X	14379725	X_14379725_SNP [dm3] X_14485692_SNP [dm6]	C	G	5.267e^-4	0.988	INTERGENIC
2L	4043915	2L_4043915_SNP [dm3] 2L_4043915_SNP [dm6]	C	A	5.268e^-4	0.988	INTRON ed	TF binding site BDTNP1_TFBS_dl
2L	17056954	2L_17056954_SNP [dm3] 2L_17056954_SNP [dm6]	T	G	5.271e^-4	0.988	INTERGENIC
2R	6284586	2R_6284586_SNP [dm3] 2R_10397081_SNP [dm6]	A	G	5.273e^-4	0.988	INTRON CG42732
2R	16967836	2R_16967836_SNP [dm3] 2R_21080331_SNP [dm6]	T	C	5.277e^-4	0.988	UPSTREAM Treh INTRON Treh
2L	13462233	2L_13462233_SNP [dm3] 2L_13462233_SNP [dm6]	A	G	5.280e^-4	0.988	INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12851238	3R_12851238_SNP [dm3] 3R_17025516_SNP [dm6]	T	A	5.288e^-4	0.988	SYNONYMOUS_CODING Pxd
X	15870628	X_15870628_DEL [dm3] X_15976595_DEL [dm6]	TATATAT	G	5.306e^-4	0.988	UPSTREAM CG42766 INTRON Or13a
3R	23560898	3R_23560898_SNP [dm3] 3R_27735176_SNP [dm6]	G	C	5.317e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12185496	X_12185496_SNP [dm3] X_12291463_SNP [dm6]	G	A	5.318e^-4	0.988	INTRON Ten-a

By genomic position
Variant impact
Gene name

mn_Glycogen_LowDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results