©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
2L | 11397687 | 2L_11397687_SNP [dm3] 2L_11397687_SNP [dm6] | A | G | 7.915e-7 | 0.99 |
INTERGENIC
|
regulatory region
REDfly_CRMs
|
|
2R | 7673484 | 2R_7673484_SNP [dm3] 2R_11785979_SNP [dm6] | A | C | 1.356e-6 | 0.99 |
INTRON
ths |
||
X | 6414560 | X_6414560_SNP [dm3] X_6520527_SNP [dm6] | T | C | 4.904e-6 | 0.99 |
INTRON
CG42340 |
||
2R | 17598285 | 2R_17598285_SNP [dm3] 2R_21710780_SNP [dm6] | T | C | 5.368e-6 | 0.99 |
INTRON
HmgD & 1 other |
TF binding site
BDTNP1_TFBS_dl
|
|
3R | 19532952 | 3R_19532952_SNP [dm3] 3R_23707230_SNP [dm6] | T | A | 7.732e-6 | 0.99 |
UPSTREAM
CR44052 INTRON CG31414 |
||
3L | 6567577 | 3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6] | T | C | 8.053e-6 | 0.99 |
INTRON
CG18769 & 1 other |
||
2R | 19085373 | 2R_19085373_SNP [dm3] 2R_23197850_SNP [dm6] | T | G | 8.625e-6 | 0.99 |
INTRON
CG34371 |
||
2R | 8937359 | 2R_8937359_SNP [dm3] 2R_13049854_SNP [dm6] | C | T | 1.003e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
2R | 8937376 | 2R_8937376_SNP [dm3] 2R_13049871_SNP [dm6] | A | T | 1.003e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
2R | 8937487 | 2R_8937487_SNP [dm3] 2R_13049982_SNP [dm6] | C | T | 1.003e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
2R | 8911622 | 2R_8911622_SNP [dm3] 2R_13024117_SNP [dm6] | A | C | 1.086e-5 | 0.99 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl
|
|
2L | 11397732 | 2L_11397732_SNP [dm3] 2L_11397732_SNP [dm6] | A | T | 1.097e-5 | 0.99 |
INTERGENIC
|
regulatory region
REDfly_CRMs
|
|
X | 7917881 | X_7917881_SNP [dm3] X_8023848_SNP [dm6] | G | A | 1.144e-5 | 0.99 |
SYNONYMOUS_CODING
Tbh |
||
3L | 10697136 | 3L_10697136_DEL [dm3] 3L_10704036_DEL [dm6] | TT | T | 1.529e-5 | 0.99 |
INTERGENIC
|
||
3L | 6650340 | 3L_6650340_SNP [dm3] 3L_6657240_SNP [dm6] | T | C | 1.578e-5 | 0.99 |
INTERGENIC
|
||
X | 6829581 | X_6829581_SNP [dm3] X_6935548_SNP [dm6] | G | T | 1.580e-5 | 0.99 |
INTRON
CG14431 |
||
2L | 9337999 | 2L_9337999_SNP [dm3] 2L_9337999_SNP [dm6] | T | C | 1.677e-5 | 0.99 |
SPLICE_SITE_REGION
Eaat1 INTRON Eaat1 |
||
2R | 17598259 | 2R_17598259_SNP [dm3] 2R_21710754_SNP [dm6] | A | C | 1.748e-5 | 0.99 |
INTRON
HmgD & 1 other |
TF binding site
BDTNP1_TFBS_dl
|
|
3R | 15123870 | 3R_15123870_SNP [dm3] 3R_19298148_SNP [dm6] | A | T | 1.888e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2R | 8850238 | 2R_8850238_SNP [dm3] 2R_12962733_SNP [dm6] | C | T | 1.903e-5 | 0.99 |
INTERGENIC
|
||
2L | 9337986 | 2L_9337986_SNP [dm3] 2L_9337986_SNP [dm6] | A | C | 1.903e-5 | 0.99 |
INTRON
Eaat1 |
||
2R | 17598378 | 2R_17598378_SNP [dm3] 2R_21710873_SNP [dm6] | G | A | 2.059e-5 | 0.99 |
INTRON
HmgD & 1 other |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_cad
|
|
3L | 18876720 | 3L_18876720_SNP [dm3] 3L_18883620_SNP [dm6] | G | A | 2.140e-5 | 0.99 |
INTRON
CG3961 |
||
2L | 12398246 | 2L_12398246_SNP [dm3] 2L_12398246_SNP [dm6] | T | A | 2.164e-5 | 0.99 |
UPSTREAM
Pkd2 DOWNSTREAM bru-2 INTERGENIC |
||
3R | 11060754 | 3R_11060754_SNP [dm3] 3R_15235032_SNP [dm6] | T | C | 2.305e-5 | 0.99 |
SYNONYMOUS_CODING
tefu |
TF binding site
BDTNP1_TFBS_da
|
|
2L | 15882559 | 2L_15882559_SNP [dm3] 2L_15882559_SNP [dm6] | C | T | 2.337e-5 | 0.99 |
DOWNSTREAM
CG44475 INTERGENIC |
TF binding site
mE1_TFBS_HSA
|
|
2L | 12858798 | 2L_12858798_SNP [dm3] 2L_12858798_SNP [dm6] | G | C | 2.341e-5 | 0.99 |
INTERGENIC
|
||
2R | 7327863 | 2R_7327863_SNP [dm3] 2R_11440358_SNP [dm6] | A | T | 2.506e-5 | 0.99 |
INTRON
CG7777 |
||
2R | 10814493 | 2R_10814493_SNP [dm3] 2R_14926988_SNP [dm6] | G | A | 2.546e-5 | 0.99 |
INTRON
CG10249 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
2R | 10580250 | 2R_10580250_SNP [dm3] 2R_14692745_SNP [dm6] | T | G | 2.591e-5 | 0.99 |
INTRON
mspo |
||
2R | 14720949 | 2R_14720949_SNP [dm3] 2R_18833444_SNP [dm6] | T | A | 2.758e-5 | 0.99 |
UTR_3_PRIME
CG15098 DOWNSTREAM CG15082 |
||
3R | 26997709 | 3R_26997709_SNP [dm3] 3R_31171987_SNP [dm6] | C | A | 2.963e-5 | 0.99 |
INTRON
Gycbeta100B |
||
X | 16775012 | X_16775012_SNP [dm3] X_16880979_SNP [dm6] | A | G | 2.998e-5 | 0.99 |
UPSTREAM
CG4872 INTERGENIC |
||
2R | 14720945 | 2R_14720945_SNP [dm3] 2R_18833440_SNP [dm6] | T | C | 3.080e-5 | 0.99 |
UTR_3_PRIME
CG15098 DOWNSTREAM CG15082 |
||
2R | 4207195 | 2R_4207195_SNP [dm3] 2R_8319690_SNP [dm6] | G | C | 3.201e-5 | 0.99 |
INTERGENIC
|
||
2R | 8937744 | 2R_8937744_SNP [dm3] 2R_13050239_SNP [dm6] | G | A | 3.201e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
3R | 12512612 | 3R_12512612_SNP [dm3] 3R_16686890_SNP [dm6] | A | T | 3.343e-5 | 0.99 |
INTRON
Ubx |
regulatory region
REDfly_CRMs
TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad |
|
3L | 8724822 | 3L_8724822_SNP [dm3] 3L_8731722_SNP [dm6] | G | T | 3.410e-5 | 0.99 |
UPSTREAM
Cp16 INTERGENIC |
TF binding site
mE1_TFBS_chinmo
|
|
X | 16231331 | X_16231331_SNP [dm3] X_16337298_SNP [dm6] | A | C | 3.434e-5 | 0.99 |
INTRON
Dsp1 |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
|
|
3R | 5688365 | 3R_5688365_SNP [dm3] 3R_9862643_SNP [dm6] | A | G | 3.675e-5 | 0.99 |
INTRON
Teh1 |
||
2R | 19716299 | 2R_19716299_SNP [dm3] 2R_23828776_SNP [dm6] | C | T | 3.736e-5 | 0.99 |
INTRON
CG5549 |
||
3R | 15123806 | 3R_15123806_SNP [dm3] 3R_19298084_SNP [dm6] | C | G | 3.742e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2L | 11397742 | 2L_11397742_DEL [dm3] 2L_11397742_DEL [dm6] | AAACCTTTTA | A | 3.766e-5 | 0.99 |
INTERGENIC
|
regulatory region
REDfly_CRMs
|
|
3R | 15123774 | 3R_15123774_SNP [dm3] 3R_19298052_SNP [dm6] | G | A | 3.852e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2R | 17570972 | 2R_17570972_SNP [dm3] 2R_21683467_SNP [dm6] | G | A | 3.932e-5 | 0.99 |
NON_SYNONYMOUS_CODING
CG30263 |
TF binding site
mE1_TFBS_cad
|
|
X | 6927604 | X_6927604_SNP [dm3] X_7033571_SNP [dm6] | A | G | 3.951e-5 | 0.99 |
INTRON
CG12541 |
TF binding site
BDTNP1_TFBS_twi
|
|
3R | 13703110 | 3R_13703110_SNP [dm3] 3R_17877388_SNP [dm6] | A | T | 3.981e-5 | 0.99 |
SYNONYMOUS_CODING
Rim |
||
3R | 12918706 | 3R_12918706_SNP [dm3] 3R_17092984_SNP [dm6] | G | A | 4.045e-5 | 0.99 |
SYNONYMOUS_CODING
cher |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
|
|
3R | 15123861 | 3R_15123861_INS [dm3] 3R_19298139_INS [dm6] | C | CTGA | 4.116e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 15123864 | 3R_15123864_MNP [dm3] 3R_19298142_MNP [dm6] | TTC | CAG | 4.116e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3L | 13304373 | 3L_13304373_SNP [dm3] 3L_13311273_SNP [dm6] | T | C | 4.167e-5 | 0.99 |
INTERGENIC
|
||
3R | 19709637 | 3R_19709637_SNP [dm3] 3R_23883915_SNP [dm6] | C | T | 4.170e-5 | 0.99 |
INTRON
Pli |
||
2R | 17548556 | 2R_17548556_SNP [dm3] 2R_21661051_SNP [dm6] | G | A | 4.270e-5 | 0.99 |
UTR_3_PRIME
pirk |
||
3L | 19203799 | 3L_19203799_SNP [dm3] 3L_19210699_SNP [dm6] | A | C | 4.274e-5 | 0.99 |
INTRON
fz2 |
TF binding site
mE1_TFBS_Kr
|
|
X | 5255972 | X_5255972_SNP [dm3] X_5361939_SNP [dm6] | G | A | 4.286e-5 | 0.99 |
INTRON
SK |
||
2R | 16953609 | 2R_16953609_SNP [dm3] 2R_21066104_SNP [dm6] | G | A | 4.348e-5 | 0.99 |
INTRON
Cht4 |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 12860002 | 2L_12860002_SNP [dm3] 2L_12860002_SNP [dm6] | G | T | 4.432e-5 | 0.99 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
X | 20007194 | X_20007194_INS [dm3] X_20113161_INS [dm6] | T | TGTTTTCGAGATTGGCTATA... | 4.589e-5 | 0.99 |
INTERGENIC
|
||
3R | 15123857 | 3R_15123857_SNP [dm3] 3R_19298135_SNP [dm6] | C | A | 4.625e-5 | 0.99 |
UPSTREAM
CG44174 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 13778634 | 3R_13778634_SNP [dm3] 3R_17952912_SNP [dm6] | G | A | 4.632e-5 | 0.99 |
INTRON
cpo |
TF binding site
mE1_TFBS_cad
|
|
2R | 8937386 | 2R_8937386_SNP [dm3] 2R_13049881_SNP [dm6] | G | A | 4.701e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
3L | 9021437 | 3L_9021437_SNP [dm3] 3L_9028337_SNP [dm6] | C | A | 4.724e-5 | 0.99 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
|
|
3R | 8620376 | 3R_8620376_SNP [dm3] 3R_12794654_SNP [dm6] | C | T | 4.774e-5 | 0.99 |
INTERGENIC
|
||
2R | 3037282 | 2R_3037282_SNP [dm3] 2R_7149777_SNP [dm6] | A | G | 4.927e-5 | 0.99 |
UPSTREAM
CR44200 & 2 others DOWNSTREAM Spn43Aa INTERGENIC |
TF binding site
mE1_TFBS_Trl
|
|
2R | 8937563 | 2R_8937563_SNP [dm3] 2R_13050058_SNP [dm6] | G | A | 4.934e-5 | 0.99 |
UPSTREAM
CG13324 INTERGENIC |
||
2L | 9331749 | 2L_9331749_SNP [dm3] 2L_9331749_SNP [dm6] | G | T | 4.978e-5 | 0.99 |
UTR_3_PRIME
Cks30A |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi
|
|
2R | 3037267 | 2R_3037267_SNP [dm3] 2R_7149762_SNP [dm6] | A | G | 5.001e-5 | 0.99 |
UPSTREAM
CR44200 & 2 others DOWNSTREAM Spn43Aa INTERGENIC |
TF binding site
mE1_TFBS_Trl
|
|
3R | 8082131 | 3R_8082131_SNP [dm3] 3R_12256409_SNP [dm6] | C | G | 5.021e-5 | 0.99 |
SYNONYMOUS_CODING
CG3942 |
TF binding site
BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
|
|
2R | 8327186 | 2R_8327186_SNP [dm3] 2R_12439681_SNP [dm6] | A | G | 5.169e-5 | 0.99 |
DOWNSTREAM
CG30334 INTRON Dyb |
||
X | 16918901 | X_16918901_SNP [dm3] X_17024868_SNP [dm6] | G | C | 5.185e-5 | 0.99 |
DOWNSTREAM
CG43997 INTRON CG45002 |
||
2L | 13146439 | 2L_13146439_SNP [dm3] 2L_13146439_SNP [dm6] | C | G | 5.220e-5 | 0.99 |
UPSTREAM
CR44199 INTERGENIC |
||
2R | 5647729 | 2R_5647729_DEL [dm3] 2R_9760224_DEL [dm6] | AGATA | A | 5.273e-5 | 0.99 |
INTRON
trpl |
||
X | 10002500 | X_10002500_INS [dm3] X_10108467_INS [dm6] | T | TTT | 5.320e-5 | 0.99 |
INTRON
RhoU |
||
X | 15444521 | X_15444521_SNP [dm3] X_15550488_SNP [dm6] | A | G | 5.428e-5 | 0.99 |
INTRON
Ac13E |
||
2L | 4109887 | 2L_4109887_SNP [dm3] 2L_4109887_SNP [dm6] | G | C | 5.493e-5 | 0.99 |
INTRON
ed |
||
2R | 17548662 | 2R_17548662_SNP [dm3] 2R_21661157_SNP [dm6] | A | G | 5.565e-5 | 0.99 |
UTR_3_PRIME
pirk |
||
2R | 11246933 | 2R_11246933_SNP [dm3] 2R_15359428_SNP [dm6] | C | A | 5.673e-5 | 0.99 |
INTRON
unc-5 |
||
2L | 9603943 | 2L_9603943_SNP [dm3] 2L_9603943_SNP [dm6] | A | T | 5.739e-5 | 0.99 |
INTERGENIC
|
regulatory region
REDfly_CRMs
TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens |
|
3R | 21973109 | 3R_21973109_SNP [dm3] 3R_26147387_SNP [dm6] | A | T | 5.774e-5 | 0.99 |
INTERGENIC
|
||
3L | 4129421 | 3L_4129421_SNP [dm3] 3L_4129421_SNP [dm6] | A | G | 5.853e-5 | 0.99 |
INTRON
ens |
||
3L | 4000401 | 3L_4000401_SNP [dm3] 3L_4000401_SNP [dm6] | A | T | 5.905e-5 | 0.99 |
INTERGENIC
|
||
2R | 19317385 | 2R_19317385_SNP [dm3] 2R_23429862_SNP [dm6] | A | G | 5.921e-5 | 0.99 |
INTRON
CG9815 |
||
3L | 15238263 | 3L_15238263_SNP [dm3] 3L_15245163_SNP [dm6] | A | G | 6.043e-5 | 0.99 |
INTERGENIC
|
TF binding site
mE1_TFBS_cad
|
|
2L | 13155448 | 2L_13155448_SNP [dm3] 2L_13155448_SNP [dm6] | T | C | 6.066e-5 | 0.99 |
INTERGENIC
|
||
3L | 6641778 | 3L_6641778_SNP [dm3] 3L_6648678_SNP [dm6] | C | T | 6.089e-5 | 0.99 |
INTERGENIC
|
||
2L | 4855638 | 2L_4855638_SNP [dm3] 2L_4855638_SNP [dm6] | A | T | 6.184e-5 | 0.99 |
INTRON
pog |
||
3L | 14563327 | 3L_14563327_SNP [dm3] 3L_14570227_SNP [dm6] | G | A | 6.277e-5 | 0.99 |
INTERGENIC
|
||
3L | 14563328 | 3L_14563328_DEL [dm3] 3L_14570228_DEL [dm6] | GG | G | 6.277e-5 | 0.99 |
INTERGENIC
|
||
3R | 13393765 | 3R_13393765_SNP [dm3] 3R_17568043_SNP [dm6] | C | A | 6.351e-5 | 0.99 |
SYNONYMOUS_CODING
Hmx UTR_3_PRIME Hmx |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3R | 11181100 | 3R_11181100_SNP [dm3] 3R_15355378_SNP [dm6] | G | A | 6.355e-5 | 0.99 |
INTRON
Atg4b |
TF binding site
mE1_TFBS_chinmo
|
|
3L | 18877901 | 3L_18877901_SNP [dm3] 3L_18884801_SNP [dm6] | C | T | 6.425e-5 | 0.99 |
SPLICE_SITE_DONOR
CG3961 UTR_5_PRIME CG3961 INTRON CG3961 |
||
2L | 16564816 | 2L_16564816_DEL [dm3] 2L_16564816_DEL [dm6] | ACTGCAGTTGTCA... | A | 6.453e-5 | 0.99 |
INTRON
CG42389 |
||
2R | 3037258 | 2R_3037258_SNP [dm3] 2R_7149753_SNP [dm6] | A | G | 6.469e-5 | 0.99 |
UPSTREAM
CR44200 & 2 others DOWNSTREAM Spn43Aa INTERGENIC |
TF binding site
mE1_TFBS_Trl
|
|
2R | 14720965 | 2R_14720965_SNP [dm3] 2R_18833460_SNP [dm6] | A | G | 6.721e-5 | 0.99 |
UTR_3_PRIME
CG15098 DOWNSTREAM CG15082 |
||
3R | 21973063 | 3R_21973063_SNP [dm3] 3R_26147341_SNP [dm6] | T | A | 6.726e-5 | 0.99 |
INTERGENIC
|
||
3L | 9021407 | 3L_9021407_SNP [dm3] 3L_9028307_SNP [dm6] | C | T | 6.758e-5 | 0.99 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
|
|
3L | 4619814 | 3L_4619814_SNP [dm3] 3L_4619814_SNP [dm6] | A | G | 6.817e-5 | 0.99 |
INTRON
Src64B |
TF binding site
mE1_TFBS_HSA
|
|
3L | 7063334 | 3L_7063334_SNP [dm3] 3L_7070234_SNP [dm6] | T | C | 6.824e-5 | 0.99 |
INTRON
CG8641 |
||
2R | 3037271 | 2R_3037271_SNP [dm3] 2R_7149766_SNP [dm6] | C | T | 6.869e-5 | 0.99 |
UPSTREAM
CR44200 & 2 others DOWNSTREAM Spn43Aa INTERGENIC |
TF binding site
mE1_TFBS_Trl
|
|
3L | 2313500 | 3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6] | G | C | 6.990e-5 | 0.99 |
INTERGENIC
|