DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.522e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1963 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	5926716	2R_5926716_SNP [dm3] 2R_10039211_SNP [dm6]	C	T	4.707e^-7	0.249	NON_SYNONYMOUS_CODING oys
X	12756893	X_12756893_SNP [dm3] X_12862860_SNP [dm6]	G	T	5.180e^-7	0.249	INTRON Pde9
X	14399033	X_14399033_SNP [dm3] X_14505000_SNP [dm6]	T	G	6.746e^-7	0.249	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6541116	X_6541116_SNP [dm3] X_6647083_SNP [dm6]	C	T	9.693e^-7	0.249	INTRON pigs	TF binding site mE1_TFBS_chinmo
2L	1445163	2L_1445163_SNP [dm3] 2L_1445163_SNP [dm6]	C	T	9.704e^-7	0.249	INTERGENIC
3L	13058142	3L_13058142_SNP [dm3] 3L_13065042_SNP [dm6]	C	A	1.057e^-6	0.249	INTERGENIC
X	6541215	X_6541215_SNP [dm3] X_6647182_SNP [dm6]	G	A	1.091e^-6	0.249	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	5926648	2R_5926648_SNP [dm3] 2R_10039143_SNP [dm6]	T	C	1.102e^-6	0.249	INTRON oys
2L	1378856	2L_1378856_INS [dm3] 2L_1378856_INS [dm6]	A	ATA	1.316e^-6	0.249	INTERGENIC
X	6541138	X_6541138_SNP [dm3] X_6647105_SNP [dm6]	G	A	1.330e^-6	0.249	INTRON pigs	TF binding site mE1_TFBS_chinmo
X	6541155	X_6541155_SNP [dm3] X_6647122_SNP [dm6]	C	A	2.124e^-6	0.342	INTRON pigs	TF binding site mE1_TFBS_chinmo
X	9108204	X_9108204_SNP [dm3] X_9214171_SNP [dm6]	C	T	2.450e^-6	0.342	UPSTREAM Obp8a INTERGENIC
X	12757013	X_12757013_SNP [dm3] X_12862980_SNP [dm6]	C	A	2.497e^-6	0.342	INTRON Pde9
X	6541151	X_6541151_SNP [dm3] X_6647118_SNP [dm6]	C	G	2.558e^-6	0.342	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	5901558	2R_5901558_SNP [dm3] 2R_10014053_SNP [dm6]	A	T	2.883e^-6	0.357	INTRON Pka-R2
2L	17554556	2L_17554556_SNP [dm3] 2L_17554556_SNP [dm6]	C	T	3.221e^-6	0.357	SYNONYMOUS_CODING CG7094
2R	5942318	2R_5942318_DEL [dm3] 2R_10054813_DEL [dm6]	TTTCAT	T	3.240e^-6	0.357	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7051651	X_7051651_SNP [dm3] X_7157618_SNP [dm6]	T	A	4.214e^-6	0.403	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	3850726	2L_3850726_SNP [dm3] 2L_3850726_SNP [dm6]	C	T	4.297e^-6	0.403	INTERGENIC
3L	10320750	3L_10320750_SNP [dm3] 3L_10327650_SNP [dm6]	G	A	4.919e^-6	0.403	DOWNSTREAM CR45244 INTERGENIC
2L	3575510	2L_3575510_SNP [dm3] 2L_3575510_SNP [dm6]	A	G	4.967e^-6	0.403	UPSTREAM CG43815 EXON CR43822
X	19906128	X_19906128_DEL [dm3] X_20012095_DEL [dm6]	ATAGGTATTTGTTGACT...	A	5.061e^-6	0.403	INTRON Dop2R
2L	307423	2L_307423_SNP [dm3] 2L_307423_SNP [dm6]	A	G	5.128e^-6	0.403	INTRON Plc21C	TF binding site mE1_TFBS_Trl
X	19906178	X_19906178_SNP [dm3] X_20012145_SNP [dm6]	A	T	5.281e^-6	0.403	INTRON Dop2R
X	19906158	X_19906158_SNP [dm3] X_20012125_SNP [dm6]	G	T	5.381e^-6	0.403	INTRON Dop2R
X	8927791	X_8927791_SNP [dm3] X_9033758_SNP [dm6]	A	G	6.980e^-6	0.493	INTRON CR43836 & 1 other
X	8927781	X_8927781_SNP [dm3] X_9033748_SNP [dm6]	T	A	7.101e^-6	0.493	INTRON CR43836 & 1 other
2L	7929503	2L_7929503_SNP [dm3] 2L_7929503_SNP [dm6]	A	T	7.637e^-6	0.511	INTRON Snoo
2L	17510638	2L_17510638_SNP [dm3] 2L_17510638_SNP [dm6]	T	C	7.939e^-6	0.513	SYNONYMOUS_CODING Dhc36C
2R	5925455	2R_5925455_SNP [dm3] 2R_10037950_SNP [dm6]	C	T	1.032e^-5	0.593	INTRON oys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	8927813	X_8927813_SNP [dm3] X_9033780_SNP [dm6]	A	C	1.052e^-5	0.593	INTRON CR43836 & 1 other
2R	5934471	2R_5934471_SNP [dm3] 2R_10046966_SNP [dm6]	A	T	1.081e^-5	0.593	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	8927776	X_8927776_SNP [dm3] X_9033743_SNP [dm6]	G	T	1.090e^-5	0.593	INTRON CR43836 & 1 other
X	6541098	X_6541098_SNP [dm3] X_6647065_SNP [dm6]	G	A	1.134e^-5	0.593	INTRON pigs	TF binding site mE1_TFBS_chinmo
2L	3393589	2L_3393589_SNP [dm3] 2L_3393589_SNP [dm6]	G	A	1.139e^-5	0.593	INTERGENIC
X	8927745	X_8927745_DEL [dm3] X_9033712_DEL [dm6]	TTTTTCC	T	1.140e^-5	0.593	INTRON CR43836 & 1 other
2L	397420	2L_397420_SNP [dm3] 2L_397420_SNP [dm6]	C	T	1.196e^-5	0.606	NON_SYNONYMOUS_CODING CG4213 DOWNSTREAM CR43718	TF binding site mE1_TFBS_cad
2L	17554333	2L_17554333_SNP [dm3] 2L_17554333_SNP [dm6]	C	T	1.316e^-5	0.64	DOWNSTREAM CG7094 INTERGENIC
2R	12470353	2R_12470353_SNP [dm3] 2R_16582848_SNP [dm6]	T	G	1.359e^-5	0.64	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8927741	X_8927741_DEL [dm3] X_9033708_DEL [dm6]	CCA	C	1.397e^-5	0.64	INTRON CR43836 & 1 other
2L	7933665	2L_7933665_SNP [dm3] 2L_7933665_SNP [dm6]	G	A	1.401e^-5	0.64	INTRON Snoo	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
2R	5927470	2R_5927470_SNP [dm3] 2R_10039965_SNP [dm6]	T	C	1.434e^-5	0.64	INTRON oys
2L	17510703	2L_17510703_SNP [dm3] 2L_17510703_SNP [dm6]	T	G	1.526e^-5	0.658	SYNONYMOUS_CODING Dhc36C
3R	4815113	3R_4815113_SNP [dm3] 3R_8989391_SNP [dm6]	G	C	1.574e^-5	0.658	NON_SYNONYMOUS_CODING CG11970	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7051824	X_7051824_SNP [dm3] X_7157791_SNP [dm6]	T	C	1.629e^-5	0.658	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	7929510	2L_7929510_SNP [dm3] 2L_7929510_SNP [dm6]	C	T	1.669e^-5	0.658	INTRON Snoo
3R	10043797	3R_10043797_SNP [dm3] 3R_14218075_SNP [dm6]	A	G	1.709e^-5	0.658	UPSTREAM CG9649 DOWNSTREAM CG31326 INTERGENIC
3L	9303714	3L_9303714_SNP [dm3] 3L_9310614_SNP [dm6]	G	T	1.724e^-5	0.658	INTERGENIC
2R	16843248	2R_16843248_SNP [dm3] 2R_20955743_SNP [dm6]	G	A	1.820e^-5	0.658	SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5631179	2L_5631179_SNP [dm3] 2L_5631179_SNP [dm6]	A	C	1.820e^-5	0.658	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	17544115	2L_17544115_SNP [dm3] 2L_17544115_SNP [dm6]	C	A	1.837e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	17035908	X_17035908_SNP [dm3] X_17141875_SNP [dm6]	C	A	1.893e^-5	0.658	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	1.919e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12634944	3L_12634944_SNP [dm3] 3L_12641844_SNP [dm6]	A	T	1.924e^-5	0.658	INTRON CR32111	TF binding site BDTNP1_TFBS_twi
X	8927778	X_8927778_SNP [dm3] X_9033745_SNP [dm6]	C	A	2.085e^-5	0.658	INTRON CR43836 & 1 other
2L	7929495	2L_7929495_SNP [dm3] 2L_7929495_SNP [dm6]	G	T	2.171e^-5	0.658	INTRON Snoo
2L	421883	2L_421883_SNP [dm3] 2L_421883_SNP [dm6]	T	C	2.186e^-5	0.658	SYNONYMOUS_CODING CG13692 UPSTREAM CG11885 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	5927440	2R_5927440_SNP [dm3] 2R_10039935_SNP [dm6]	T	A	2.207e^-5	0.658	INTRON oys
3L	2879417	3L_2879417_SNP [dm3] 3L_2879417_SNP [dm6]	T	C	2.220e^-5	0.658	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2879419	3L_2879419_SNP [dm3] 3L_2879419_SNP [dm6]	A	G	2.266e^-5	0.658	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7929480	2L_7929480_MNP [dm3] 2L_7929480_MNP [dm6]	TTG	AAC	2.298e^-5	0.658	INTRON Snoo
2R	15834645	2R_15834645_SNP [dm3] 2R_19947140_SNP [dm6]	T	G	2.300e^-5	0.658	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19514553	X_19514553_SNP [dm3] X_19620520_SNP [dm6]	G	A	2.314e^-5	0.658	SYNONYMOUS_CODING CG14221 DOWNSTREAM NAA20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14135644	2L_14135644_SNP [dm3] 2L_14135644_SNP [dm6]	C	T	2.510e^-5	0.658	INTRON CG17341
3L	2879434	3L_2879434_SNP [dm3] 3L_2879434_SNP [dm6]	T	A	2.546e^-5	0.658	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12064109	2L_12064109_SNP [dm3] 2L_12064109_SNP [dm6]	G	T	2.568e^-5	0.658	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2R	5942386	2R_5942386_SNP [dm3] 2R_10054881_SNP [dm6]	G	A	2.584e^-5	0.658	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7929487	2L_7929487_SNP [dm3] 2L_7929487_SNP [dm6]	C	G	2.665e^-5	0.658	INTRON Snoo
2R	5942435	2R_5942435_SNP [dm3] 2R_10054930_SNP [dm6]	A	C	2.732e^-5	0.658	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12852441	3L_12852441_SNP [dm3] 3L_12859341_SNP [dm6]	C	T	2.775e^-5	0.658	NON_SYNONYMOUS_CODING CG32107
2L	282652	2L_282652_SNP [dm3] 2L_282652_SNP [dm6]	G	T	2.794e^-5	0.658	SPLICE_SITE_DONOR CG11601 DOWNSTREAM smo & 1 other INTRON CG11601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	300821	2L_300821_SNP [dm3] 2L_300821_SNP [dm6]	G	A	2.794e^-5	0.658	UPSTREAM Pi3K21B INTRON Pi3K21B
2L	309316	2L_309316_SNP [dm3] 2L_309316_SNP [dm6]	C	T	2.794e^-5	0.658	UPSTREAM Plc21C INTRON Plc21C EXON CR43719
3R	21455545	3R_21455545_SNP [dm3] 3R_25629823_SNP [dm6]	G	T	2.797e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	7929485	2L_7929485_SNP [dm3] 2L_7929485_SNP [dm6]	A	C	2.819e^-5	0.658	INTRON Snoo
3L	7496687	3L_7496687_SNP [dm3] 3L_7503587_SNP [dm6]	G	T	2.864e^-5	0.658	INTERGENIC
2L	10730727	2L_10730727_SNP [dm3] 2L_10730727_SNP [dm6]	T	C	2.888e^-5	0.658	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5874055	3L_5874055_SNP [dm3] 3L_5880955_SNP [dm6]	C	T	2.950e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	669197	3L_669197_SNP [dm3] 3L_669197_SNP [dm6]	T	G	2.953e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8927823	X_8927823_SNP [dm3] X_9033790_SNP [dm6]	G	T	2.959e^-5	0.658	INTRON CR43836 & 1 other
2R	7570740	2R_7570740_SNP [dm3] 2R_11683235_SNP [dm6]	A	G	2.967e^-5	0.658	DOWNSTREAM CG13196 INTRON Buffy
2R	17501493	2R_17501493_SNP [dm3] 2R_21613988_SNP [dm6]	T	G	2.983e^-5	0.658	UTR_3_PRIME CG18870 UPSTREAM CG15673 DOWNSTREAM CG18870
3L	10566499	3L_10566499_SNP [dm3] 3L_10573399_SNP [dm6]	T	C	2.991e^-5	0.658	INTRON A2bp1	TF binding site mE1_TFBS_chinmo
3L	12162546	3L_12162546_SNP [dm3] 3L_12169446_SNP [dm6]	C	T	3.017e^-5	0.658	INTRON Rh7
X	19906147	X_19906147_SNP [dm3] X_20012114_SNP [dm6]	T	A	3.023e^-5	0.658	INTRON Dop2R
2L	7929504	2L_7929504_SNP [dm3] 2L_7929504_SNP [dm6]	T	A	3.054e^-5	0.658	INTRON Snoo
X	17036132	X_17036132_SNP [dm3] X_17142099_SNP [dm6]	C	T	3.087e^-5	0.658	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
2R	19179384	2R_19179384_SNP [dm3] 2R_23291861_SNP [dm6]	C	T	3.104e^-5	0.658	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15820945	2L_15820945_SNP [dm3] 2L_15820945_SNP [dm6]	T	A	3.165e^-5	0.658	INTERGENIC
X	10896243	X_10896243_DEL [dm3] X_11002210_DEL [dm6]	ACACACACA	A	3.174e^-5	0.658	INTRON CG42339
2L	14788110	2L_14788110_SNP [dm3] 2L_14788110_SNP [dm6]	G	A	3.211e^-5	0.658	INTERGENIC
2R	18762939	2R_18762939_SNP [dm3] 2R_22875416_SNP [dm6]	C	T	3.313e^-5	0.658	UPSTREAM CR45469 DOWNSTREAM CG13532 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5773907	2L_5773907_DEL [dm3] 2L_5773907_DEL [dm6]	AAT	C	3.358e^-5	0.658	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20252634	3L_20252634_SNP [dm3] 3L_20259534_SNP [dm6]	C	T	3.362e^-5	0.658	UPSTREAM rdgC INTRON rdgC
X	8927814	X_8927814_SNP [dm3] X_9033781_SNP [dm6]	A	T	3.363e^-5	0.658	INTRON CR43836 & 1 other
3L	12013546	3L_12013546_SNP [dm3] 3L_12020446_SNP [dm6]	T	C	3.384e^-5	0.658	INTRON rols
X	17036128	X_17036128_SNP [dm3] X_17142095_SNP [dm6]	T	C	3.405e^-5	0.658	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
2L	5773920	2L_5773920_SNP [dm3] 2L_5773920_SNP [dm6]	A	T	3.485e^-5	0.661	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7929477	2L_7929477_SNP [dm3] 2L_7929477_SNP [dm6]	A	G	3.533e^-5	0.661	INTRON Snoo
3L	2593347	3L_2593347_SNP [dm3] 3L_2593347_SNP [dm6]	T	A	3.577e^-5	0.661	INTRON dos	TF binding site mE1_TFBS_cad
2R	5918703	2R_5918703_SNP [dm3] 2R_10031198_SNP [dm6]	C	A	3.589e^-5	0.661	SYNONYMOUS_CODING CG1407 UTR_3_PRIME CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
X	8931352	X_8931352_SNP [dm3] X_9037319_SNP [dm6]	T	C	3.605e^-5	0.661	INTRON CR43836 & 1 other
2R	5913850	2R_5913850_SNP [dm3] 2R_10026345_SNP [dm6]	A	T	3.634e^-5	0.661	UPSTREAM CG12128 & 1 other DOWNSTREAM CR44294 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	12263756	2L_12263756_SNP [dm3] 2L_12263756_SNP [dm6]	A	G	3.735e^-5	0.673	INTRON aret
3L	12199223	3L_12199223_SNP [dm3] 3L_12206123_SNP [dm6]	T	G	3.854e^-5	0.688	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20670903	3R_20670903_SNP [dm3] 3R_24845181_SNP [dm6]	T	G	3.937e^-5	0.692	INTRON Esp
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	3.952e^-5	0.692	INTRON CG18088
2R	16954691	2R_16954691_SNP [dm3] 2R_21067186_SNP [dm6]	T	A	4.136e^-5	0.715	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2593352	3L_2593352_SNP [dm3] 3L_2593352_SNP [dm6]	C	A	4.160e^-5	0.715	INTRON dos	TF binding site mE1_TFBS_cad
3L	10325705	3L_10325705_SNP [dm3] 3L_10332605_SNP [dm6]	A	T	4.223e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	1155526	2L_1155526_SNP [dm3] 2L_1155526_SNP [dm6]	T	C	4.318e^-5	0.723	INTRON capt
2R	6526147	2R_6526147_SNP [dm3] 2R_10638642_SNP [dm6]	A	G	4.347e^-5	0.723	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	15849402	3L_15849402_SNP [dm3] 3L_15856302_SNP [dm6]	T	G	4.362e^-5	0.723	NON_SYNONYMOUS_CODING pHCl INTRON pHCl
X	17036124	X_17036124_SNP [dm3] X_17142091_SNP [dm6]	C	A	4.513e^-5	0.738	START_GAINED mei-218 UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
X	9533630	X_9533630_SNP [dm3] X_9639597_SNP [dm6]	T	C	4.530e^-5	0.738	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	399172	2L_399172_SNP [dm3] 2L_399172_SNP [dm6]	C	T	4.670e^-5	0.75	INTRON CG4213
3R	21455544	3R_21455544_SNP [dm3] 3R_25629822_SNP [dm6]	A	G	4.775e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	1690538	3L_1690538_SNP [dm3] 3L_1690538_SNP [dm6]	C	T	4.847e^-5	0.75	INTRON CG7991
3L	17919241	3L_17919241_SNP [dm3] 3L_17926141_SNP [dm6]	C	T	4.860e^-5	0.75	INTERGENIC
3L	17919245	3L_17919245_SNP [dm3] 3L_17926145_SNP [dm6]	A	G	4.927e^-5	0.75	INTERGENIC
3L	13908830	3L_13908830_SNP [dm3] 3L_13915730_SNP [dm6]	C	T	5.050e^-5	0.75	INTRON Rgl
2L	14127743	2L_14127743_SNP [dm3] 2L_14127743_SNP [dm6]	C	T	5.050e^-5	0.75	INTERGENIC
2L	13711389	2L_13711389_SNP [dm3] 2L_13711389_SNP [dm6]	C	A	5.062e^-5	0.75	DOWNSTREAM CG7311 INTRON CG31814
2L	5958659	2L_5958659_SNP [dm3] 2L_5958659_SNP [dm6]	T	C	5.076e^-5	0.75	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6109956	2R_6109956_SNP [dm3] 2R_10222451_SNP [dm6]	G	C	5.084e^-5	0.75	INTRON Hr46 & 1 other
3R	10375752	3R_10375752_SNP [dm3] 3R_14550030_SNP [dm6]	A	G	5.148e^-5	0.75	INTRON Pde6
3L	13344942	3L_13344942_SNP [dm3] 3L_13351842_SNP [dm6]	G	A	5.153e^-5	0.75	SYNONYMOUS_CODING CG17687
X	17036107	X_17036107_SNP [dm3] X_17142074_SNP [dm6]	A	G	5.160e^-5	0.75	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
3L	10566462	3L_10566462_SNP [dm3] 3L_10573362_SNP [dm6]	T	A	5.224e^-5	0.75	INTRON A2bp1
3L	13908831	3L_13908831_SNP [dm3] 3L_13915731_SNP [dm6]	C	G	5.292e^-5	0.75	INTRON Rgl
2R	9075508	2R_9075508_SNP [dm3] 2R_13188003_SNP [dm6]	A	G	5.340e^-5	0.75	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15276023	2R_15276023_SNP [dm3] 2R_19388518_SNP [dm6]	T	A	5.344e^-5	0.75	INTRON CG10081
3L	2879416	3L_2879416_SNP [dm3] 3L_2879416_SNP [dm6]	T	G	5.423e^-5	0.75	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9553144	2L_9553144_SNP [dm3] 2L_9553144_SNP [dm6]	T	G	5.459e^-5	0.75	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5374167	2L_5374167_SNP [dm3] 2L_5374167_SNP [dm6]	C	T	5.525e^-5	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24675717	3R_24675717_SNP [dm3] 3R_28849995_SNP [dm6]	G	A	5.554e^-5	0.75	INTRON spg
2R	5915599	2R_5915599_SNP [dm3] 2R_10028094_SNP [dm6]	C	T	5.554e^-5	0.75	NON_SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
3L	7327050	3L_7327050_DEL [dm3] 3L_7333950_DEL [dm6]	TG	C	5.556e^-5	0.75	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad
2R	14597280	2R_14597280_SNP [dm3] 2R_18709775_SNP [dm6]	G	A	5.610e^-5	0.75	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8435182	2R_8435182_SNP [dm3] 2R_12547677_SNP [dm6]	T	A	5.688e^-5	0.75	INTRON fra
3L	9466968	3L_9466968_SNP [dm3] 3L_9473868_SNP [dm6]	A	G	5.695e^-5	0.75	INTRON CG44838	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8927786	X_8927786_SNP [dm3] X_9033753_SNP [dm6]	A	G	5.696e^-5	0.75	INTRON CR43836 & 1 other
2R	16686787	2R_16686787_SNP [dm3] 2R_20799282_SNP [dm6]	C	T	5.722e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20788178	3L_20788178_SNP [dm3] 3L_20795078_SNP [dm6]	G	A	5.829e^-5	0.753	DOWNSTREAM CR43706 EXON CR43705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	20321361	2L_20321361_SNP [dm3] 2L_20321361_SNP [dm6]	T	A	5.867e^-5	0.753	INTRON spir	TF binding site mE1_TFBS_cad
2L	6282316	2L_6282316_SNP [dm3] 2L_6282316_SNP [dm6]	C	T	5.899e^-5	0.753	INTRON Ddr	TF binding site mE1_TFBS_chinmo
3L	6025191	3L_6025191_SNP [dm3] 3L_6032091_SNP [dm6]	A	C	5.929e^-5	0.753	INTERGENIC
2R	18568434	2R_18568434_SNP [dm3] 2R_22680929_SNP [dm6]	G	C	6.019e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2761502	3L_2761502_INS [dm3] 3L_2761502_INS [dm6]	C	CC	6.023e^-5	0.753	INTRON Mrtf	TF binding site mE1_TFBS_cad
X	8927826	X_8927826_SNP [dm3] X_9033793_SNP [dm6]	G	A	6.046e^-5	0.753	INTRON CR43836 & 1 other
2L	2208072	2L_2208072_SNP [dm3] 2L_2208072_SNP [dm6]	C	G	6.130e^-5	0.753	SYNONYMOUS_CODING CG33124
3L	9238765	3L_9238765_SNP [dm3] 3L_9245665_SNP [dm6]	G	A	6.143e^-5	0.753	INTERGENIC
2R	5927448	2R_5927448_SNP [dm3] 2R_10039943_SNP [dm6]	A	G	6.145e^-5	0.753	INTRON oys
2L	8972653	2L_8972653_SNP [dm3] 2L_8972653_SNP [dm6]	T	G	6.249e^-5	0.756	INTRON CG9541
X	15775561	X_15775561_SNP [dm3] X_15881528_SNP [dm6]	A	G	6.280e^-5	0.756	SYNONYMOUS_CODING tay
3L	12203761	3L_12203761_INS [dm3] 3L_12210661_INS [dm6]	G	GG	6.311e^-5	0.756	UTR_3_PRIME app INTRON app
2L	13310417	2L_13310417_SNP [dm3] 2L_13310417_SNP [dm6]	T	G	6.333e^-5	0.756	INTRON CG43778
3R	6322778	3R_6322778_SNP [dm3] 3R_10497056_SNP [dm6]	C	T	6.462e^-5	0.757	INTERGENIC
2L	16930540	2L_16930540_SNP [dm3] 2L_16930540_SNP [dm6]	C	G	6.507e^-5	0.757	INTERGENIC
2L	13276254	2L_13276254_SNP [dm3] 2L_13276254_SNP [dm6]	A	T	6.514e^-5	0.757	SYNONYMOUS_CODING CG44085 UTR_3_PRIME CG44085	TF binding site BDTNP1_TFBS_twi
X	13211011	X_13211011_SNP [dm3] X_13316978_SNP [dm6]	A	T	6.522e^-5	0.757	INTRON IP3K2
3L	12852427	3L_12852427_SNP [dm3] 3L_12859327_SNP [dm6]	T	G	6.596e^-5	0.757	NON_SYNONYMOUS_CODING CG32107
2R	12531062	2R_12531062_SNP [dm3] 2R_16643557_SNP [dm6]	G	A	6.613e^-5	0.757	SYNONYMOUS_CODING gprs	TF binding site BDTNP1_TFBS_da
3L	10999610	3L_10999610_SNP [dm3] 3L_11006510_SNP [dm6]	A	G	6.626e^-5	0.757	INTRON klu	TF binding site mE1_TFBS_HSA
2L	7161861	2L_7161861_SNP [dm3] 2L_7161861_SNP [dm6]	A	C	6.668e^-5	0.757	INTERGENIC
X	13771541	X_13771541_DEL [dm3] X_13877508_DEL [dm6]	AA	A	6.823e^-5	0.77	INTRON mamo
2L	13846924	2L_13846924_SNP [dm3] 2L_13846924_SNP [dm6]	A	G	6.869e^-5	0.77	INTRON CenG1A & 1 other
3L	13345491	3L_13345491_SNP [dm3] 3L_13352391_SNP [dm6]	A	T	6.899e^-5	0.77	NON_SYNONYMOUS_CODING CG17687
2L	7929447	2L_7929447_INS [dm3] 2L_7929447_INS [dm6]	T	TTATGCT	7.037e^-5	0.778	INTRON Snoo
2L	16931553	2L_16931553_SNP [dm3] 2L_16931553_SNP [dm6]	C	A	7.059e^-5	0.778	INTERGENIC
3R	13980620	3R_13980620_SNP [dm3] 3R_18154898_SNP [dm6]	A	T	7.111e^-5	0.779	INTERGENIC
2L	284882	2L_284882_SNP [dm3] 2L_284882_SNP [dm6]	A	C	7.183e^-5	0.78	SYNONYMOUS_CODING CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4185405	2L_4185405_SNP [dm3] 2L_4185405_SNP [dm6]	C	A	7.214e^-5	0.78	DOWNSTREAM CG31961 EXON CR44057
2L	3314079	2L_3314079_SNP [dm3] 2L_3314079_SNP [dm6]	C	T	7.266e^-5	0.78	SYNONYMOUS_CODING CG3277
X	9391485	X_9391485_SNP [dm3] X_9497452_SNP [dm6]	T	C	7.311e^-5	0.78	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9084066	X_9084066_SNP [dm3] X_9190033_SNP [dm6]	A	G	7.330e^-5	0.78	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2R	6525757	2R_6525757_SNP [dm3] 2R_10638252_SNP [dm6]	A	G	7.412e^-5	0.78	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	17879966	2R_17879966_SNP [dm3] 2R_21992461_SNP [dm6]	A	G	7.433e^-5	0.78	INTRON CG34370
2R	10545093	2R_10545093_SNP [dm3] 2R_14657588_SNP [dm6]	C	A	7.449e^-5	0.78	INTRON Adgf-E
2L	20026662	2L_20026662_SNP [dm3] 2L_20026662_SNP [dm6]	C	G	7.600e^-5	0.781	UPSTREAM CG10659 INTERGENIC
3L	10294083	3L_10294083_SNP [dm3] 3L_10300983_SNP [dm6]	C	T	7.606e^-5	0.781	INTERGENIC
2R	5915232	2R_5915232_SNP [dm3] 2R_10027727_SNP [dm6]	G	T	7.614e^-5	0.781	SYNONYMOUS_CODING CG12128 UPSTREAM CR44294 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
2L	7014078	2L_7014078_SNP [dm3] 2L_7014078_SNP [dm6]	T	C	7.629e^-5	0.781	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3L	15920646	3L_15920646_SNP [dm3] 3L_15927546_SNP [dm6]	C	T	7.773e^-5	0.789	INTRON Pka-C3
X	16270519	X_16270519_SNP [dm3] X_16376486_SNP [dm6]	G	C	7.819e^-5	0.789	INTRON Fur2
3L	17919211	3L_17919211_DEL [dm3] 3L_17926111_DEL [dm6]	TA	T	7.832e^-5	0.789	INTERGENIC
2L	7961712	2L_7961712_SNP [dm3] 2L_7961712_SNP [dm6]	A	G	7.961e^-5	0.792	INTRON Snoo
X	13207712	X_13207712_SNP [dm3] X_13313679_SNP [dm6]	C	T	7.967e^-5	0.792	INTRON IP3K2
2R	5970618	2R_5970618_SNP [dm3] 2R_10083113_SNP [dm6]	A	T	8.012e^-5	0.792	NON_SYNONYMOUS_CODING egr
2R	17987076	2R_17987076_SNP [dm3] 2R_22099571_SNP [dm6]	A	G	8.028e^-5	0.792	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5922076	2R_5922076_SNP [dm3] 2R_10034571_SNP [dm6]	T	G	8.087e^-5	0.794	NON_SYNONYMOUS_CODING CG12129 DOWNSTREAM oys	TF binding site mE1_TFBS_inv
X	6944764	X_6944764_SNP [dm3] X_7050731_SNP [dm6]	C	T	8.206e^-5	0.801	DOWNSTREAM nullo INTRON CG12541
2R	6139986	2R_6139986_SNP [dm3] 2R_10252481_SNP [dm6]	A	G	8.586e^-5	0.823	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	20221448	2R_20221448_SNP [dm3] 2R_24333925_SNP [dm6]	G	A	8.592e^-5	0.823	START_GAINED slbo UTR_5_PRIME slbo DOWNSTREAM CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11722836	2L_11722836_SNP [dm3] 2L_11722836_SNP [dm6]	C	T	8.677e^-5	0.823	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10730671	2L_10730671_SNP [dm3] 2L_10730671_SNP [dm6]	T	C	8.680e^-5	0.823	DOWNSTREAM CG6443 & 1 other INTRON CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10566464	3L_10566464_SNP [dm3] 3L_10573364_SNP [dm6]	T	G	8.731e^-5	0.823	INTRON A2bp1
2L	3510190	2L_3510190_SNP [dm3] 2L_3510190_SNP [dm6]	T	C	8.732e^-5	0.823	UPSTREAM CG31954 DOWNSTREAM CG33123 & 1 other INTERGENIC
3L	12807112	3L_12807112_SNP [dm3] 3L_12814012_SNP [dm6]	C	G	8.849e^-5	0.823	UTR_5_PRIME CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14127772	2L_14127772_SNP [dm3] 2L_14127772_SNP [dm6]	T	C	8.955e^-5	0.823	INTERGENIC
3L	13344558	3L_13344558_SNP [dm3] 3L_13351458_SNP [dm6]	G	A	9.107e^-5	0.823	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
3L	12297502	3L_12297502_SNP [dm3] 3L_12304402_SNP [dm6]	C	G	9.122e^-5	0.823	INTERGENIC
2L	5957705	2L_5957705_SNP [dm3] 2L_5957705_SNP [dm6]	A	C	9.143e^-5	0.823	UPSTREAM CG13998 DOWNSTREAM Vm26Ac & 1 other INTERGENIC
2L	7012115	2L_7012115_SNP [dm3] 2L_7012115_SNP [dm6]	T	C	9.178e^-5	0.823	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20227204	2L_20227204_SNP [dm3] 2L_20227204_SNP [dm6]	A	C	9.239e^-5	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7085199	3L_7085199_SNP [dm3] 3L_7092099_SNP [dm6]	T	A	9.293e^-5	0.823	INTERGENIC
2R	6735556	2R_6735556_SNP [dm3] 2R_10848051_SNP [dm6]	A	T	9.307e^-5	0.823	INTRON CG30015
2R	5900874	2R_5900874_SNP [dm3] 2R_10013369_SNP [dm6]	T	G	9.319e^-5	0.823	INTRON Pka-R2
3L	2593361	3L_2593361_SNP [dm3] 3L_2593361_SNP [dm6]	T	G	9.323e^-5	0.823	INTRON dos	TF binding site mE1_TFBS_cad
3R	13674887	3R_13674887_SNP [dm3] 3R_17849165_SNP [dm6]	T	C	9.457e^-5	0.823	INTRON tinc
3R	15081869	3R_15081869_SNP [dm3] 3R_19256147_SNP [dm6]	C	T	9.508e^-5	0.823	UPSTREAM CG14280 INTERGENIC
2L	7932208	2L_7932208_SNP [dm3] 2L_7932208_SNP [dm6]	A	G	9.517e^-5	0.823	INTRON Snoo
2L	1401141	2L_1401141_SNP [dm3] 2L_1401141_SNP [dm6]	C	A	9.518e^-5	0.823	INTRON lea
2L	3474109	2L_3474109_SNP [dm3] 2L_3474109_SNP [dm6]	C	T	9.533e^-5	0.823	SYNONYMOUS_CODING pgant4	TF binding site mE1_TFBS_inv
X	5810554	X_5810554_SNP [dm3] X_5916521_SNP [dm6]	C	T	9.552e^-5	0.823	UPSTREAM CG3726 & 1 other INTRON CG3011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10159039	X_10159039_SNP [dm3] X_10265006_SNP [dm6]	G	T	9.563e^-5	0.823	SYNONYMOUS_CODING CG12643	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1383806	2L_1383806_SNP [dm3] 2L_1383806_SNP [dm6]	G	A	9.566e^-5	0.823	INTRON lea
X	20854729	X_20854729_SNP [dm3] X_20983702_SNP [dm6]	C	A	9.600e^-5	0.823	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	9.614e^-5	0.823	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12788911	X_12788911_SNP [dm3] X_12894878_SNP [dm6]	A	C	9.806e^-5	0.833	INTRON Pde9	TF binding site BDTNP1_TFBS_dl
2L	13847409	2L_13847409_SNP [dm3] 2L_13847409_SNP [dm6]	G	A	9.823e^-5	0.833	SYNONYMOUS_CODING CG7916 UPSTREAM CG7953 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5496548	3L_5496548_SNP [dm3] 3L_5503448_SNP [dm6]	G	A	9.870e^-5	0.833	DOWNSTREAM CG34342 INTERGENIC
X	13207687	X_13207687_SNP [dm3] X_13313654_SNP [dm6]	C	G	1.036e^-4	0.865	INTRON IP3K2
2L	8968237	2L_8968237_SNP [dm3] 2L_8968237_SNP [dm6]	G	A	1.036e^-4	0.865	NON_SYNONYMOUS_CODING CG18088
2R	5918541	2R_5918541_SNP [dm3] 2R_10031036_SNP [dm6]	C	A	1.041e^-4	0.865	DOWNSTREAM CG12128 INTRON CG1407
X	16884520	X_16884520_SNP [dm3] X_16990487_SNP [dm6]	G	A	1.046e^-4	0.865	INTRON CG45002	TF binding site BDTNP1_TFBS_hb
X	20854727	X_20854727_SNP [dm3] X_20983700_SNP [dm6]	A	C	1.056e^-4	0.865	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5631149	2L_5631149_SNP [dm3] 2L_5631149_SNP [dm6]	C	T	1.069e^-4	0.865	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi
3L	830591	3L_830591_SNP [dm3] 3L_830591_SNP [dm6]	G	T	1.069e^-4	0.865	UPSTREAM CR45184 & 2 others INTRON CG13900	TF binding site mE1_TFBS_sens
2R	5941932	2R_5941932_SNP [dm3] 2R_10054427_SNP [dm6]	A	G	1.073e^-4	0.865	SYNONYMOUS_CODING Def INTRON magu	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	12419743	3L_12419743_SNP [dm3] 3L_12426643_SNP [dm6]	T	A	1.074e^-4	0.865	INTRON toe
X	19324186	X_19324186_SNP [dm3] X_19430153_SNP [dm6]	G	C	1.075e^-4	0.865	INTRON kek5
3L	3584461	3L_3584461_SNP [dm3] 3L_3584461_SNP [dm6]	C	T	1.075e^-4	0.865	INTRON Eip63E
2L	285917	2L_285917_SNP [dm3] 2L_285917_SNP [dm6]	G	A	1.080e^-4	0.865	UPSTREAM CG3625 INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	381728	2L_381728_SNP [dm3] 2L_381728_SNP [dm6]	A	T	1.086e^-4	0.866	INTRON al	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19227475	3R_19227475_SNP [dm3] 3R_23401753_SNP [dm6]	G	A	1.098e^-4	0.872	DOWNSTREAM CG17380 INTERGENIC
3L	12806609	3L_12806609_SNP [dm3] 3L_12813509_SNP [dm6]	C	T	1.111e^-4	0.878	SYNONYMOUS_CODING CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5917094	2R_5917094_SNP [dm3] 2R_10029589_SNP [dm6]	A	G	1.127e^-4	0.882	UTR_3_PRIME CG12128 & 1 other DOWNSTREAM CG1407 INTRON CG1407
2R	19113870	2R_19113870_INS [dm3] 2R_23226347_INS [dm6]	C	CACC	1.128e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20854736	X_20854736_SNP [dm3] X_20983709_SNP [dm6]	T	A	1.129e^-4	0.882	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13980615	3R_13980615_INS [dm3] 3R_18154893_INS [dm6]	T	TGT	1.139e^-4	0.884	INTERGENIC
2L	18592382	2L_18592382_SNP [dm3] 2L_18592382_SNP [dm6]	C	A	1.141e^-4	0.884	INTRON CG15160
2R	9470485	2R_9470485_SNP [dm3] 2R_13582980_SNP [dm6]	A	C	1.155e^-4	0.886	INTRON CG6191 & 1 other
2R	9470491	2R_9470491_SNP [dm3] 2R_13582986_SNP [dm6]	G	A	1.155e^-4	0.886	INTRON CG6191 & 1 other
3R	20337059	3R_20337059_SNP [dm3] 3R_24511337_SNP [dm6]	A	C	1.168e^-4	0.886	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5914402	2R_5914402_SNP [dm3] 2R_10026897_SNP [dm6]	G	A	1.170e^-4	0.886	UTR_5_PRIME CG12128 UPSTREAM Pka-R2 & 1 other INTRON CG12128	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	4181118	2L_4181118_SNP [dm3] 2L_4181118_SNP [dm6]	T	C	1.170e^-4	0.886	INTERGENIC
3L	13344573	3L_13344573_SNP [dm3] 3L_13351473_SNP [dm6]	G	A	1.172e^-4	0.886	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
X	9391853	X_9391853_SNP [dm3] X_9497820_SNP [dm6]	T	C	1.180e^-4	0.889	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	13932073	2L_13932073_SNP [dm3] 2L_13932073_SNP [dm6]	A	G	1.196e^-4	0.895	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
2L	17546192	2L_17546192_SNP [dm3] 2L_17546192_SNP [dm6]	T	A	1.200e^-4	0.895	UPSTREAM CR45697 INTERGENIC
3L	6025217	3L_6025217_SNP [dm3] 3L_6032117_SNP [dm6]	G	A	1.217e^-4	0.895	INTERGENIC
2L	20130066	2L_20130066_SNP [dm3] 2L_20130066_SNP [dm6]	T	C	1.217e^-4	0.895	INTERGENIC
2L	12470091	2L_12470091_SNP [dm3] 2L_12470091_SNP [dm6]	T	G	1.218e^-4	0.895	INTRON bun
2L	13821812	2L_13821812_SNP [dm3] 2L_13821812_SNP [dm6]	G	C	1.222e^-4	0.895	NON_SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10566513	3L_10566513_SNP [dm3] 3L_10573413_SNP [dm6]	C	T	1.225e^-4	0.895	INTRON A2bp1	TF binding site mE1_TFBS_chinmo
3R	26571857	3R_26571857_SNP [dm3] 3R_30746135_SNP [dm6]	C	A	1.228e^-4	0.895	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
X	15525130	X_15525130_SNP [dm3] X_15631097_SNP [dm6]	T	A	1.244e^-4	0.895	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	7475925	2L_7475925_SNP [dm3] 2L_7475925_SNP [dm6]	T	A	1.255e^-4	0.895	SPLICE_SITE_REGION CG6441 INTRON Ziz & 1 other
2L	5887544	2L_5887544_SNP [dm3] 2L_5887544_SNP [dm6]	C	T	1.257e^-4	0.895	UPSTREAM CR44578 DOWNSTREAM CG9029 EXON CR44577
2L	305149	2L_305149_SNP [dm3] 2L_305149_SNP [dm6]	A	G	1.262e^-4	0.895	UTR_3_PRIME Pi3K21B UPSTREAM Plc21C	TF binding site mE1_TFBS_HSA
3L	10566533	3L_10566533_SNP [dm3] 3L_10573433_SNP [dm6]	T	C	1.263e^-4	0.895	INTRON A2bp1	TF binding site mE1_TFBS_chinmo
X	11041908	X_11041908_SNP [dm3] X_11147875_SNP [dm6]	C	A	1.265e^-4	0.895	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	7637507	2L_7637507_SNP [dm3] 2L_7637507_SNP [dm6]	C	T	1.266e^-4	0.895	DOWNSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	20854722	X_20854722_SNP [dm3] X_20983695_SNP [dm6]	G	A	1.272e^-4	0.895	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	19341725	X_19341725_SNP [dm3] X_19447692_SNP [dm6]	C	T	1.272e^-4	0.895	INTRON kek5
2R	20436608	2R_20436608_SNP [dm3] 2R_24549085_SNP [dm6]	C	G	1.275e^-4	0.895	INTRON CG4622 & 1 other
2L	13906561	2L_13906561_SNP [dm3] 2L_13906561_SNP [dm6]	T	A	1.298e^-4	0.904	SPLICE_SITE_REGION Ance UTR_5_PRIME Ance INTRON Ance	TF binding site mE1_TFBS_cad
2L	9030557	2L_9030557_SNP [dm3] 2L_9030557_SNP [dm6]	C	G	1.306e^-4	0.904	INTRON CG9582 & 1 other
2L	9532112	2L_9532112_SNP [dm3] 2L_9532112_SNP [dm6]	A	T	1.308e^-4	0.904	INTRON Oatp30B	TF binding site mE1_TFBS_sens
2R	5911935	2R_5911935_SNP [dm3] 2R_10024430_SNP [dm6]	A	G	1.318e^-4	0.904	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13777731	3R_13777731_SNP [dm3] 3R_17952009_SNP [dm6]	T	C	1.319e^-4	0.904	INTRON cpo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10578961	3L_10578961_SNP [dm3] 3L_10585861_SNP [dm6]	A	G	1.332e^-4	0.904	INTRON A2bp1
3R	7074203	3R_7074203_SNP [dm3] 3R_11248481_SNP [dm6]	G	A	1.332e^-4	0.904	EXON CR43283
3R	13777738	3R_13777738_SNP [dm3] 3R_17952016_SNP [dm6]	C	T	1.334e^-4	0.904	INTRON cpo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20670840	3R_20670840_SNP [dm3] 3R_24845118_SNP [dm6]	G	A	1.335e^-4	0.904	INTRON Esp
2R	14537400	2R_14537400_SNP [dm3] 2R_18649895_SNP [dm6]	G	A	1.339e^-4	0.904	INTRON SP2637
2R	18533926	2R_18533926_SNP [dm3] 2R_22646421_SNP [dm6]	C	T	1.340e^-4	0.904	UPSTREAM CG2852 DOWNSTREAM CG30195 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	8968566	2L_8968566_DEL [dm3] 2L_8968566_DEL [dm6]	CG	C	1.370e^-4	0.906	INTRON CG18088
2R	5939658	2R_5939658_SNP [dm3] 2R_10052153_SNP [dm6]	T	C	1.389e^-4	0.906	UTR_5_PRIME sel UPSTREAM magu DOWNSTREAM CR44297 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	7932211	2L_7932211_SNP [dm3] 2L_7932211_SNP [dm6]	G	A	1.404e^-4	0.906	INTRON Snoo
3L	13348179	3L_13348179_SNP [dm3] 3L_13355079_SNP [dm6]	T	C	1.406e^-4	0.906	DOWNSTREAM CG17687 INTERGENIC
X	5250117	X_5250117_SNP [dm3] X_5356084_SNP [dm6]	T	C	1.411e^-4	0.906	INTRON SK
X	20854720	X_20854720_INS [dm3] X_20983693_INS [dm6]	A	AG	1.413e^-4	0.906	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	7161839	2L_7161839_SNP [dm3] 2L_7161839_SNP [dm6]	A	T	1.413e^-4	0.906	INTERGENIC
2L	13844337	2L_13844337_SNP [dm3] 2L_13844337_SNP [dm6]	C	T	1.416e^-4	0.906	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad
X	12143021	X_12143021_SNP [dm3] X_12248988_SNP [dm6]	T	C	1.420e^-4	0.906	INTRON Ten-a	transposable element FlyBase
2L	7011887	2L_7011887_SNP [dm3] 2L_7011887_SNP [dm6]	G	A	1.421e^-4	0.906	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	14529177	3R_14529177_SNP [dm3] 3R_18703455_SNP [dm6]	T	C	1.431e^-4	0.906	INTERGENIC
2L	1304590	2L_1304590_SNP [dm3] 2L_1304590_SNP [dm6]	A	T	1.436e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20216358	2R_20216358_SNP [dm3] 2R_24328835_SNP [dm6]	A	T	1.437e^-4	0.906	UPSTREAM CR44810 INTRON CR44810
2L	13812652	2L_13812652_SNP [dm3] 2L_13812652_SNP [dm6]	A	C	1.437e^-4	0.906	UTR_3_PRIME CG16865 DOWNSTREAM CG16888	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	6269529	X_6269529_SNP [dm3] X_6375496_SNP [dm6]	C	A	1.447e^-4	0.906	INTERGENIC
X	9391553	X_9391553_SNP [dm3] X_9497520_SNP [dm6]	C	T	1.460e^-4	0.906	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7933624	2L_7933624_SNP [dm3] 2L_7933624_SNP [dm6]	A	T	1.463e^-4	0.906	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	7311185	2R_7311185_SNP [dm3] 2R_11423680_SNP [dm6]	A	G	1.463e^-4	0.906	INTRON Drip
3L	10566468	3L_10566468_SNP [dm3] 3L_10573368_SNP [dm6]	A	G	1.470e^-4	0.906	INTRON A2bp1
3L	12419755	3L_12419755_SNP [dm3] 3L_12426655_SNP [dm6]	A	T	1.489e^-4	0.906	INTRON toe
2R	13823211	2R_13823211_SNP [dm3] 2R_17935706_SNP [dm6]	C	T	1.495e^-4	0.906	INTERGENIC
2R	5942571	2R_5942571_SNP [dm3] 2R_10055066_SNP [dm6]	T	A	1.506e^-4	0.906	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	333077	2L_333077_SNP [dm3] 2L_333077_SNP [dm6]	A	C	1.513e^-4	0.906	UPSTREAM CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13674679	2R_13674679_SNP [dm3] 2R_17787174_SNP [dm6]	T	C	1.513e^-4	0.906	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	17541798	2L_17541798_SNP [dm3] 2L_17541798_SNP [dm6]	C	A	1.514e^-4	0.906	UPSTREAM CR43304 INTERGENIC
2R	6096200	2R_6096200_INS [dm3] 2R_10208695_INS [dm6]	A	AATCGCATA	1.517e^-4	0.906	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	12687425	2R_12687425_SNP [dm3] 2R_16799920_SNP [dm6]	C	T	1.523e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	4522090	2L_4522090_SNP [dm3] 2L_4522090_SNP [dm6]	G	T	1.537e^-4	0.906	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6806819	3L_6806819_SNP [dm3] 3L_6813719_SNP [dm6]	A	C	1.541e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	10946936	2R_10946936_SNP [dm3] 2R_15059431_SNP [dm6]	G	C	1.542e^-4	0.906	INTERGENIC
3L	10578903	3L_10578903_DEL [dm3] 3L_10585803_DEL [dm6]	GG	G	1.543e^-4	0.906	INTRON A2bp1	TF binding site mE1_TFBS_cad
3R	19451319	3R_19451319_SNP [dm3] 3R_23625597_SNP [dm6]	G	T	1.547e^-4	0.906	INTRON CG31145
2L	9663978	2L_9663978_SNP [dm3] 2L_9663978_SNP [dm6]	T	C	1.547e^-4	0.906	INTERGENIC
3L	7085353	3L_7085353_SNP [dm3] 3L_7092253_SNP [dm6]	A	G	1.552e^-4	0.906	UPSTREAM Cpr65Ec INTERGENIC
2L	13106725	2L_13106725_SNP [dm3] 2L_13106725_SNP [dm6]	C	A	1.554e^-4	0.906	UPSTREAM CG5142 INTERGENIC
3L	12419777	3L_12419777_SNP [dm3] 3L_12426677_SNP [dm6]	T	A	1.557e^-4	0.906	INTRON toe
2L	17577770	2L_17577770_SNP [dm3] 2L_17577770_SNP [dm6]	C	T	1.573e^-4	0.906	INTERGENIC
2R	13844768	2R_13844768_SNP [dm3] 2R_17957263_SNP [dm6]	G	A	1.575e^-4	0.906	UPSTREAM PpY-55A INTERGENIC
3R	13674725	3R_13674725_SNP [dm3] 3R_17849003_SNP [dm6]	C	T	1.577e^-4	0.906	INTRON tinc
2L	14086812	2L_14086812_SNP [dm3] 2L_14086812_SNP [dm6]	C	A	1.591e^-4	0.906	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi
2L	8999228	2L_8999228_SNP [dm3] 2L_8999228_SNP [dm6]	C	T	1.592e^-4	0.906	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad
3R	11908060	3R_11908060_INS [dm3] 3R_16082338_INS [dm6]	T	TT	1.601e^-4	0.906	INTRON Mhcl
4	981576	4_981576_DEL [dm3] 4_960950_DEL [dm6]	TT	T	1.603e^-4	0.906	INTRON CR44030	transposable element FlyBase
2R	9303356	2R_9303356_SNP [dm3] 2R_13415851_SNP [dm6]	T	C	1.605e^-4	0.906	INTRON CG42321	TF binding site mE1_TFBS_HSA
2R	18127811	2R_18127811_INS [dm3] 2R_22240306_INS [dm6]	G	GTGCTCAG	1.607e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7305364	3L_7305364_SNP [dm3] 3L_7312264_SNP [dm6]	G	T	1.608e^-4	0.906	INTRON unc-13-4A
3L	1550832	3L_1550832_SNP [dm3] 3L_1550832_SNP [dm6]	T	C	1.612e^-4	0.906	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14543571	2L_14543571_DEL [dm3] 2L_14543571_DEL [dm6]	TT	T	1.619e^-4	0.906	INTERGENIC
3L	10578869	3L_10578869_INS [dm3] 3L_10585769_INS [dm6]	A	ATT	1.621e^-4	0.906	INTRON A2bp1	TF binding site mE1_TFBS_cad
3R	20396119	3R_20396119_DEL [dm3] 3R_24570397_DEL [dm6]	GT	G	1.622e^-4	0.906	INTRON CG13624
2R	19125245	2R_19125245_SNP [dm3] 2R_23237722_SNP [dm6]	C	A	1.623e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9553556	2L_9553556_SNP [dm3] 2L_9553556_SNP [dm6]	A	C	1.624e^-4	0.906	INTRON jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	2382681	3L_2382681_SNP [dm3] 3L_2382681_SNP [dm6]	T	A	1.627e^-4	0.906	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13753638	3R_13753638_SNP [dm3] 3R_17927916_SNP [dm6]	C	T	1.637e^-4	0.906	INTRON cpo
2L	1433133	2L_1433133_SNP [dm3] 2L_1433133_SNP [dm6]	C	A	1.656e^-4	0.906	DOWNSTREAM snRNA:U3:22A INTERGENIC
2R	19791748	2R_19791748_SNP [dm3] 2R_23904225_SNP [dm6]	G	A	1.659e^-4	0.906	SYNONYMOUS_CODING CG13562 DOWNSTREAM Lpt & 1 other
2R	15834698	2R_15834698_SNP [dm3] 2R_19947193_SNP [dm6]	C	T	1.669e^-4	0.906	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5915601	2R_5915601_SNP [dm3] 2R_10028096_SNP [dm6]	C	T	1.676e^-4	0.906	SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
2L	1433752	2L_1433752_SNP [dm3] 2L_1433752_SNP [dm6]	C	T	1.677e^-4	0.906	DOWNSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
2L	15193784	2L_15193784_SNP [dm3] 2L_15193784_SNP [dm6]	T	C	1.680e^-4	0.906	INTRON CG4168
3L	17242494	3L_17242494_SNP [dm3] 3L_17249394_SNP [dm6]	A	C	1.695e^-4	0.906	INTRON CR43870	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9553572	2L_9553572_SNP [dm3] 2L_9553572_SNP [dm6]	A	T	1.696e^-4	0.906	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20063842	3R_20063842_SNP [dm3] 3R_24238120_SNP [dm6]	C	G	1.699e^-4	0.906	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6837266	2L_6837266_SNP [dm3] 2L_6837266_SNP [dm6]	G	A	1.700e^-4	0.906	INTRON sens-2
3L	4342612	3L_4342612_SNP [dm3] 3L_4342612_SNP [dm6]	A	G	1.711e^-4	0.906	INTRON Cip4
2L	5887599	2L_5887599_SNP [dm3] 2L_5887599_SNP [dm6]	T	C	1.720e^-4	0.906	UPSTREAM CR44578 DOWNSTREAM CG9029 EXON CR44577
3R	24668438	3R_24668438_SNP [dm3] 3R_28842716_SNP [dm6]	A	G	1.724e^-4	0.906	UPSTREAM Apc INTRON Apc
2L	4286413	2L_4286413_SNP [dm3] 2L_4286413_SNP [dm6]	C	A	1.727e^-4	0.906	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8070415	2L_8070415_SNP [dm3] 2L_8070415_SNP [dm6]	G	A	1.728e^-4	0.906	INTRON poe
3L	10018155	3L_10018155_SNP [dm3] 3L_10025055_SNP [dm6]	A	T	1.740e^-4	0.906	INTRON dpr6
2L	546463	2L_546463_SNP [dm3] 2L_546463_SNP [dm6]	A	C	1.742e^-4	0.906	UTR_3_PRIME Ets21C DOWNSTREAM Ets21C INTRON nAChRbeta3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5374145	2L_5374145_SNP [dm3] 2L_5374145_SNP [dm6]	C	A	1.742e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13980651	3R_13980651_SNP [dm3] 3R_18154929_SNP [dm6]	C	T	1.752e^-4	0.906	INTERGENIC
3R	16690890	3R_16690890_SNP [dm3] 3R_20865168_SNP [dm6]	T	A	1.765e^-4	0.906	INTRON CG3822
3L	13344106	3L_13344106_SNP [dm3] 3L_13351006_SNP [dm6]	T	C	1.768e^-4	0.906	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5922545	2R_5922545_SNP [dm3] 2R_10035040_SNP [dm6]	T	C	1.773e^-4	0.906	UTR_3_PRIME oys DOWNSTREAM oys & 1 other
2R	5940927	2R_5940927_SNP [dm3] 2R_10053422_SNP [dm6]	C	T	1.781e^-4	0.906	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3L	23979824	3L_23979824_SNP [dm3] 3L_23986724_SNP [dm6]	C	G	1.782e^-4	0.906	UPSTREAM CG40470 INTERGENIC
3R	13775572	3R_13775572_SNP [dm3] 3R_17949850_SNP [dm6]	T	G	1.783e^-4	0.906	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5932607	2R_5932607_SNP [dm3] 2R_10045102_SNP [dm6]	T	G	1.786e^-4	0.906	INTRON oys EXON CR44295
3R	20336985	3R_20336985_SNP [dm3] 3R_24511263_SNP [dm6]	T	C	1.793e^-4	0.906	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19645098	3L_19645098_SNP [dm3] 3L_19651998_SNP [dm6]	C	A	1.794e^-4	0.906	INTRON tey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7637208	2L_7637208_SNP [dm3] 2L_7637208_SNP [dm6]	G	A	1.796e^-4	0.906	DOWNSTREAM CR44799 EXON CR44800	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7123735	2L_7123735_SNP [dm3] 2L_7123735_SNP [dm6]	T	C	1.819e^-4	0.906	INTRON Pvf3
X	13211054	X_13211054_DEL [dm3] X_13317021_DEL [dm6]	CAGTC	C	1.824e^-4	0.906	INTRON IP3K2
3R	14167276	3R_14167276_SNP [dm3] 3R_18341554_SNP [dm6]	A	G	1.833e^-4	0.906	INTRON CG15803
3R	20337066	3R_20337066_SNP [dm3] 3R_24511344_SNP [dm6]	T	A	1.834e^-4	0.906	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3505694	2L_3505694_SNP [dm3] 2L_3505694_SNP [dm6]	A	T	1.839e^-4	0.906	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	26169681	3R_26169681_SNP [dm3] 3R_30343959_SNP [dm6]	T	G	1.844e^-4	0.906	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	11455190	3R_11455190_SNP [dm3] 3R_15629468_SNP [dm6]	A	C	1.847e^-4	0.906	INTERGENIC
X	16608931	X_16608931_SNP [dm3] X_16714898_SNP [dm6]	G	A	1.850e^-4	0.906	SYNONYMOUS_CODING CG34325 DOWNSTREAM CG13008
3L	6806575	3L_6806575_SNP [dm3] 3L_6813475_SNP [dm6]	A	T	1.858e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_Kr
3L	6878743	3L_6878743_SNP [dm3] 3L_6885643_SNP [dm6]	A	G	1.870e^-4	0.906	INTERGENIC
2L	11361362	2L_11361362_SNP [dm3] 2L_11361362_SNP [dm6]	T	A	1.875e^-4	0.906	INTRON salr	regulatory region REDfly_CRMs
2L	3510196	2L_3510196_SNP [dm3] 2L_3510196_SNP [dm6]	C	T	1.879e^-4	0.906	UPSTREAM CG31954 DOWNSTREAM CG33123 & 1 other INTERGENIC
2L	12175985	2L_12175985_INS [dm3] 2L_12175985_INS [dm6]	A	TTTGTG	1.903e^-4	0.906	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	12470083	2L_12470083_SNP [dm3] 2L_12470083_SNP [dm6]	A	C	1.904e^-4	0.906	INTRON bun
2R	20224317	2R_20224317_SNP [dm3] 2R_24336794_SNP [dm6]	A	T	1.913e^-4	0.906	UPSTREAM CR44282 INTERGENIC
3R	5558569	3R_5558569_SNP [dm3] 3R_9732847_SNP [dm6]	T	A	1.915e^-4	0.906	INTRON alphaTub85E	TF binding site mE1_TFBS_cad
3L	10579034	3L_10579034_SNP [dm3] 3L_10585934_SNP [dm6]	G	A	1.921e^-4	0.906	INTRON A2bp1
2L	9011371	2L_9011371_SNP [dm3] 2L_9011371_SNP [dm6]	A	C	1.926e^-4	0.906	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	2742251	2L_2742251_SNP [dm3] 2L_2742251_SNP [dm6]	A	G	1.941e^-4	0.906	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3122711	2L_3122711_SNP [dm3] 2L_3122711_SNP [dm6]	A	C	1.950e^-4	0.906	INTRON toc
2R	15298816	2R_15298816_SNP [dm3] 2R_19411311_SNP [dm6]	G	A	1.961e^-4	0.906	UTR_5_PRIME hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17879844	2R_17879844_SNP [dm3] 2R_21992339_SNP [dm6]	G	A	1.968e^-4	0.906	INTRON CG34370
2R	17879851	2R_17879851_SNP [dm3] 2R_21992346_SNP [dm6]	C	T	1.968e^-4	0.906	INTRON CG34370
2L	285011	2L_285011_SNP [dm3] 2L_285011_SNP [dm6]	A	T	1.968e^-4	0.906	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6025144	3L_6025144_SNP [dm3] 3L_6032044_SNP [dm6]	C	T	1.970e^-4	0.906	INTERGENIC
3R	7310472	3R_7310472_SNP [dm3] 3R_11484750_SNP [dm6]	C	G	1.974e^-4	0.906	INTERGENIC
2L	17315799	2L_17315799_SNP [dm3] 2L_17315799_SNP [dm6]	A	T	1.980e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14093714	2R_14093714_SNP [dm3] 2R_18206209_SNP [dm6]	G	A	1.987e^-4	0.906	INTERGENIC
X	6594630	X_6594630_SNP [dm3] X_6700597_SNP [dm6]	G	T	2.009e^-4	0.906	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	13348168	3L_13348168_DEL [dm3] 3L_13355068_DEL [dm6]	TCT	T	2.016e^-4	0.906	DOWNSTREAM CG17687 INTERGENIC
2R	6124602	2R_6124602_SNP [dm3] 2R_10237097_SNP [dm6]	C	T	2.016e^-4	0.906	UTR_5_PRIME Hr46 UPSTREAM Hdc DOWNSTREAM CR45265	TF binding site mE1_TFBS_Trl
3L	13344366	3L_13344366_SNP [dm3] 3L_13351266_SNP [dm6]	C	T	2.032e^-4	0.906	INTRON CG17687	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7475915	2L_7475915_SNP [dm3] 2L_7475915_SNP [dm6]	G	T	2.034e^-4	0.906	INTRON Ziz & 1 other
2L	3702529	2L_3702529_SNP [dm3] 2L_3702529_SNP [dm6]	G	A	2.041e^-4	0.906	UPSTREAM CR44311 DOWNSTREAM CG42467 & 1 other INTERGENIC
2L	7475473	2L_7475473_SNP [dm3] 2L_7475473_SNP [dm6]	C	T	2.053e^-4	0.906	SYNONYMOUS_CODING CG6441 INTRON Ziz
2L	20228469	2L_20228469_SNP [dm3] 2L_20228469_SNP [dm6]	A	T	2.058e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17986441	3R_17986441_SNP [dm3] 3R_22160719_SNP [dm6]	G	A	2.058e^-4	0.906	INTRON SKIP	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	8767457	2R_8767457_SNP [dm3] 2R_12879952_SNP [dm6]	C	T	2.059e^-4	0.906	UPSTREAM Aats-asp & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	13347232	3L_13347232_SNP [dm3] 3L_13354132_SNP [dm6]	C	T	2.060e^-4	0.906	SPLICE_SITE_REGION CG17687 INTRON CG17687
3L	13347251	3L_13347251_INS [dm3] 3L_13354151_INS [dm6]	T	TAT	2.060e^-4	0.906	INTRON CG17687
2R	7340715	2R_7340715_SNP [dm3] 2R_11453210_SNP [dm6]	T	A	2.072e^-4	0.906	INTRON E_Pc_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	8165208	3L_8165208_SNP [dm3] 3L_8172108_SNP [dm6]	G	A	2.074e^-4	0.906	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
3R	4978794	3R_4978794_SNP [dm3] 3R_9153072_SNP [dm6]	A	T	2.080e^-4	0.906	INTRON pum
2R	5953192	2R_5953192_SNP [dm3] 2R_10065687_SNP [dm6]	C	T	2.083e^-4	0.906	UPSTREAM mRpL42 INTRON CG2292	TF binding site mE1_TFBS_sens
3L	12241151	3L_12241151_INS [dm3] 3L_12248051_INS [dm6]	G	GG	2.096e^-4	0.906	INTRON app
2R	5910620	2R_5910620_SNP [dm3] 2R_10023115_SNP [dm6]	C	A	2.098e^-4	0.906	INTRON Pka-R2
2R	6526150	2R_6526150_SNP [dm3] 2R_10638645_SNP [dm6]	A	T	2.098e^-4	0.906	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	13885212	2L_13885212_SNP [dm3] 2L_13885212_SNP [dm6]	G	T	2.102e^-4	0.906	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16325197	3R_16325197_SNP [dm3] 3R_20499475_SNP [dm6]	A	G	2.109e^-4	0.906	DOWNSTREAM Dic2 INTERGENIC
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	2.123e^-4	0.906	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	1257877	2L_1257877_SNP [dm3] 2L_1257877_SNP [dm6]	C	A	2.146e^-4	0.906	INTRON robo3
2L	4189869	2L_4189869_SNP [dm3] 2L_4189869_SNP [dm6]	T	C	2.151e^-4	0.906	UTR_3_PRIME CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
X	17036120	X_17036120_SNP [dm3] X_17142087_SNP [dm6]	A	G	2.157e^-4	0.906	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
3L	1723488	3L_1723488_SNP [dm3] 3L_1723488_SNP [dm6]	A	T	2.159e^-4	0.906	UPSTREAM CG18171 & 1 other INTRON drpr
3L	2034082	3L_2034082_SNP [dm3] 3L_2034082_SNP [dm6]	A	C	2.164e^-4	0.906	INTERGENIC
2R	19037659	2R_19037659_SNP [dm3] 2R_23150136_SNP [dm6]	A	G	2.165e^-4	0.906	INTERGENIC
2L	16928480	2L_16928480_SNP [dm3] 2L_16928480_SNP [dm6]	G	C	2.165e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7011957	2L_7011957_SNP [dm3] 2L_7011957_SNP [dm6]	A	C	2.168e^-4	0.906	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	17507999	3R_17507999_SNP [dm3] 3R_21682277_SNP [dm6]	G	A	2.169e^-4	0.906	INTRON CG31176
X	3044515	X_3044515_SNP [dm3] X_3150482_SNP [dm6]	C	T	2.170e^-4	0.906	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20132109	3R_20132109_SNP [dm3] 3R_24306387_SNP [dm6]	A	G	2.173e^-4	0.906	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1575874	2L_1575874_SNP [dm3] 2L_1575874_SNP [dm6]	G	A	2.176e^-4	0.906	INTRON haf
3L	7327105	3L_7327105_SNP [dm3] 3L_7334005_SNP [dm6]	A	G	2.180e^-4	0.906	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14249831	2L_14249831_SNP [dm3] 2L_14249831_SNP [dm6]	C	T	2.181e^-4	0.906	INTERGENIC
2L	8999547	2L_8999547_SNP [dm3] 2L_8999547_SNP [dm6]	T	G	2.184e^-4	0.906	UTR_3_PRIME Try29F DOWNSTREAM Try29F	TF binding site mE1_TFBS_cad
3R	18291573	3R_18291573_SNP [dm3] 3R_22465851_SNP [dm6]	T	C	2.193e^-4	0.906	SYNONYMOUS_CODING CG7054 UPSTREAM Pebp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11236375	2L_11236375_SNP [dm3] 2L_11236375_SNP [dm6]	C	T	2.209e^-4	0.906	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl
2R	17544919	2R_17544919_SNP [dm3] 2R_21657414_SNP [dm6]	A	T	2.213e^-4	0.906	UTR_3_PRIME CG10082 UPSTREAM CG10320 & 1 other
3L	8420342	3L_8420342_SNP [dm3] 3L_8427242_SNP [dm6]	C	A	2.213e^-4	0.906	INTRON Cbl
2L	15193763	2L_15193763_SNP [dm3] 2L_15193763_SNP [dm6]	T	C	2.215e^-4	0.906	INTRON CG4168
2R	16110423	2R_16110423_SNP [dm3] 2R_20222918_SNP [dm6]	G	A	2.216e^-4	0.906	UPSTREAM CR45423 INTERGENIC
2L	10712519	2L_10712519_SNP [dm3] 2L_10712519_SNP [dm6]	G	C	2.223e^-4	0.906	INTERGENIC
X	3829782	X_3829782_SNP [dm3] X_3935749_SNP [dm6]	G	A	2.223e^-4	0.906	SYNONYMOUS_CODING CG2938 UPSTREAM CG2941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7932072	2L_7932072_SNP [dm3] 2L_7932072_SNP [dm6]	G	A	2.226e^-4	0.906	INTRON Snoo
2L	9553496	2L_9553496_SNP [dm3] 2L_9553496_SNP [dm6]	C	T	2.229e^-4	0.906	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	310715	2L_310715_SNP [dm3] 2L_310715_SNP [dm6]	T	C	2.239e^-4	0.906	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8967660	2L_8967660_SNP [dm3] 2L_8967660_SNP [dm6]	T	A	2.242e^-4	0.906	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2R	8592650	2R_8592650_SNP [dm3] 2R_12705145_SNP [dm6]	G	A	2.246e^-4	0.906	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14204666	2L_14204666_DEL [dm3] 2L_14204666_DEL [dm6]	AGA	A	2.248e^-4	0.906	INTRON Dyrk2
2L	2742309	2L_2742309_SNP [dm3] 2L_2742309_SNP [dm6]	T	C	2.251e^-4	0.906	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14204658	2L_14204658_INS [dm3] 2L_14204658_INS [dm6]	G	GCACA	2.252e^-4	0.906	INTRON Dyrk2
2R	5939866	2R_5939866_SNP [dm3] 2R_10052361_SNP [dm6]	A	C	2.253e^-4	0.906	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	11972590	3R_11972590_SNP [dm3] 3R_16146868_SNP [dm6]	G	T	2.260e^-4	0.906	UPSTREAM CG5916 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6770540	3L_6770540_SNP [dm3] 3L_6777440_SNP [dm6]	T	C	2.271e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8067574	2L_8067574_SNP [dm3] 2L_8067574_SNP [dm6]	C	A	2.278e^-4	0.906	INTRON poe
3R	3461625	3R_3461625_SNP [dm3] 3R_7635903_SNP [dm6]	T	A	2.278e^-4	0.906	INTRON CG34127
3L	5660844	3L_5660844_SNP [dm3] 3L_5667744_SNP [dm6]	T	G	2.281e^-4	0.906	INTRON sif
2L	7637800	2L_7637800_SNP [dm3] 2L_7637800_SNP [dm6]	T	A	2.284e^-4	0.906	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10967629	2R_10967629_SNP [dm3] 2R_15080124_SNP [dm6]	A	C	2.284e^-4	0.906	INTERGENIC
3R	21220389	3R_21220389_SNP [dm3] 3R_25394667_SNP [dm6]	G	C	2.291e^-4	0.906	INTRON Fur1
3R	23249245	3R_23249245_SNP [dm3] 3R_27423523_SNP [dm6]	A	G	2.294e^-4	0.906	INTRON side
2L	1378766	2L_1378766_SNP [dm3] 2L_1378766_SNP [dm6]	G	A	2.302e^-4	0.906	INTERGENIC
2L	14249832	2L_14249832_SNP [dm3] 2L_14249832_SNP [dm6]	T	A	2.311e^-4	0.906	INTERGENIC
2R	5919120	2R_5919120_SNP [dm3] 2R_10031615_SNP [dm6]	G	A	2.312e^-4	0.906	SYNONYMOUS_CODING CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
3L	2034125	3L_2034125_SNP [dm3] 3L_2034125_SNP [dm6]	C	T	2.314e^-4	0.906	INTERGENIC
2L	284303	2L_284303_SNP [dm3] 2L_284303_SNP [dm6]	T	C	2.320e^-4	0.906	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11292578	2L_11292578_INS [dm3] 2L_11292578_INS [dm6]	G	GGGTCTTTGG	2.323e^-4	0.906	INTERGENIC
2R	8435112	2R_8435112_SNP [dm3] 2R_12547607_SNP [dm6]	C	A	2.326e^-4	0.906	INTRON fra
2L	4330090	2L_4330090_SNP [dm3] 2L_4330090_SNP [dm6]	A	C	2.327e^-4	0.906	INTRON CG16857
2L	5251783	2L_5251783_SNP [dm3] 2L_5251783_SNP [dm6]	G	T	2.337e^-4	0.906	INTRON tkv
3L	20252473	3L_20252473_SNP [dm3] 3L_20259373_SNP [dm6]	T	A	2.340e^-4	0.906	UPSTREAM rdgC INTRON rdgC
2R	14597338	2R_14597338_SNP [dm3] 2R_18709833_SNP [dm6]	C	T	2.348e^-4	0.906	INTRON CG15087	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7327129	3L_7327129_SNP [dm3] 3L_7334029_SNP [dm6]	C	A	2.355e^-4	0.906	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16989542	2R_16989542_SNP [dm3] 2R_21102037_SNP [dm6]	A	G	2.363e^-4	0.906	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7069479	2L_7069479_SNP [dm3] 2L_7069479_SNP [dm6]	T	C	2.368e^-4	0.906	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
2R	12687601	2R_12687601_SNP [dm3] 2R_16800096_SNP [dm6]	C	T	2.376e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8785492	2R_8785492_SNP [dm3] 2R_12897987_SNP [dm6]	G	A	2.377e^-4	0.906	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11426489	3R_11426489_SNP [dm3] 3R_15600767_SNP [dm6]	A	C	2.390e^-4	0.906	INTERGENIC
2R	6131744	2R_6131744_SNP [dm3] 2R_10244239_SNP [dm6]	C	T	2.396e^-4	0.906	SYNONYMOUS_CODING Hdc
3L	2949751	3L_2949751_SNP [dm3] 3L_2949751_SNP [dm6]	C	T	2.401e^-4	0.906	DOWNSTREAM CG32846 INTRON Shab
2L	13844347	2L_13844347_SNP [dm3] 2L_13844347_SNP [dm6]	T	A	2.402e^-4	0.906	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad
2L	15875709	2L_15875709_SNP [dm3] 2L_15875709_SNP [dm6]	C	T	2.426e^-4	0.906	INTERGENIC
2L	1577244	2L_1577244_DEL [dm3] 2L_1577244_DEL [dm6]	AGATTTAGAAGTCTTGTTA...	A	2.428e^-4	0.906	INTRON haf
2R	20222349	2R_20222349_SNP [dm3] 2R_24334826_SNP [dm6]	C	G	2.434e^-4	0.906	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	7598068	2R_7598068_SNP [dm3] 2R_11710563_SNP [dm6]	G	C	2.435e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15066333	2L_15066333_INS [dm3] 2L_15066333_INS [dm6]	A	AA	2.438e^-4	0.906	INTRON vas & 1 other
3R	24270167	3R_24270167_SNP [dm3] 3R_28444445_SNP [dm6]	A	T	2.441e^-4	0.906	INTRON beat-VI
3L	13347462	3L_13347462_SNP [dm3] 3L_13354362_SNP [dm6]	C	T	2.454e^-4	0.906	INTRON CG17687
X	20855337	X_20855337_SNP [dm3] X_20984310_SNP [dm6]	T	C	2.458e^-4	0.906	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14760362	2R_14760362_SNP [dm3] 2R_18872857_SNP [dm6]	T	C	2.466e^-4	0.906	INTERGENIC
2L	6979689	2L_6979689_SNP [dm3] 2L_6979689_SNP [dm6]	G	A	2.469e^-4	0.906	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20001045	3R_20001045_SNP [dm3] 3R_24175323_SNP [dm6]	G	A	2.475e^-4	0.906	INTRON CG13606
2R	5933621	2R_5933621_SNP [dm3] 2R_10046116_SNP [dm6]	A	T	2.475e^-4	0.906	DOWNSTREAM CR44295 INTRON oys	TF binding site BDTNP1_TFBS_dl
2L	13711390	2L_13711390_SNP [dm3] 2L_13711390_SNP [dm6]	T	C	2.491e^-4	0.906	DOWNSTREAM CG7311 INTRON CG31814
X	7086317	X_7086317_SNP [dm3] X_7192284_SNP [dm6]	C	A	2.493e^-4	0.906	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
2R	5933785	2R_5933785_SNP [dm3] 2R_10046280_SNP [dm6]	A	C	2.503e^-4	0.906	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7598078	2R_7598078_SNP [dm3] 2R_11710573_SNP [dm6]	A	C	2.522e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	11292464	2L_11292464_SNP [dm3] 2L_11292464_SNP [dm6]	C	G	2.539e^-4	0.906	INTERGENIC
3L	1636616	3L_1636616_SNP [dm3] 3L_1636616_SNP [dm6]	C	T	2.540e^-4	0.906	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	12193005	3L_12193005_SNP [dm3] 3L_12199905_SNP [dm6]	C	T	2.542e^-4	0.906	DOWNSTREAM CG11529 & 1 other INTERGENIC
2L	6282364	2L_6282364_SNP [dm3] 2L_6282364_SNP [dm6]	C	G	2.546e^-4	0.906	INTRON Ddr	TF binding site mE1_TFBS_chinmo
2R	3862786	2R_3862786_DEL [dm3] 2R_7975281_DEL [dm6]	TT	T	2.547e^-4	0.906	INTRON ACC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21250148	X_21250148_SNP [dm3] X_21379121_SNP [dm6]	A	G	2.560e^-4	0.906	INTRON slgA
2R	5924114	2R_5924114_SNP [dm3] 2R_10036609_SNP [dm6]	G	A	2.563e^-4	0.906	UTR_3_PRIME oys
2L	14271892	2L_14271892_SNP [dm3] 2L_14271892_SNP [dm6]	A	T	2.569e^-4	0.906	INTRON wb
2R	20224160	2R_20224160_SNP [dm3] 2R_24336637_SNP [dm6]	C	A	2.569e^-4	0.906	UPSTREAM CR44282 INTERGENIC
3L	2034115	3L_2034115_SNP [dm3] 3L_2034115_SNP [dm6]	G	T	2.570e^-4	0.906	INTERGENIC
2L	14124447	2L_14124447_SNP [dm3] 2L_14124447_SNP [dm6]	G	A	2.575e^-4	0.906	INTERGENIC
3R	14611131	3R_14611131_SNP [dm3] 3R_18785409_SNP [dm6]	G	T	2.581e^-4	0.906	INTRON CG7720
2L	4286403	2L_4286403_SNP [dm3] 2L_4286403_SNP [dm6]	T	G	2.581e^-4	0.906	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10579092	3L_10579092_SNP [dm3] 3L_10585992_SNP [dm6]	T	C	2.583e^-4	0.906	INTRON A2bp1
2R	5692977	2R_5692977_SNP [dm3] 2R_9805472_SNP [dm6]	A	G	2.592e^-4	0.906	INTRON CG1688
3L	13344371	3L_13344371_SNP [dm3] 3L_13351271_SNP [dm6]	A	T	2.593e^-4	0.906	INTRON CG17687	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12204497	3L_12204497_SNP [dm3] 3L_12211397_SNP [dm6]	C	T	2.596e^-4	0.906	UTR_3_PRIME app INTRON app	TF binding site mE1_TFBS_cad
2R	13674200	2R_13674200_SNP [dm3] 2R_17786695_SNP [dm6]	A	T	2.610e^-4	0.906	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	9050375	2L_9050375_SNP [dm3] 2L_9050375_SNP [dm6]	G	A	2.635e^-4	0.906	INTERGENIC
2L	13847382	2L_13847382_SNP [dm3] 2L_13847382_SNP [dm6]	C	T	2.648e^-4	0.906	SYNONYMOUS_CODING CG7916 UPSTREAM CG7953 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9959608	2R_9959608_SNP [dm3] 2R_14072103_SNP [dm6]	A	G	2.648e^-4	0.906	INTRON Prosap	TF binding site mE1_TFBS_cad
3R	14139379	3R_14139379_SNP [dm3] 3R_18313657_SNP [dm6]	G	A	2.657e^-4	0.906	INTRON PKD
3R	14139365	3R_14139365_SNP [dm3] 3R_18313643_SNP [dm6]	T	G	2.661e^-4	0.906	INTRON PKD
2L	3125535	2L_3125535_SNP [dm3] 2L_3125535_SNP [dm6]	G	A	2.664e^-4	0.906	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5897455	2R_5897455_SNP [dm3] 2R_10009950_SNP [dm6]	A	T	2.664e^-4	0.906	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4917533	2L_4917533_SNP [dm3] 2L_4917533_SNP [dm6]	C	A	2.694e^-4	0.906	INTRON hoe1
3R	14117137	3R_14117137_SNP [dm3] 3R_18291415_SNP [dm6]	T	C	2.695e^-4	0.906	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1446099	2L_1446099_SNP [dm3] 2L_1446099_SNP [dm6]	T	G	2.704e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12528810	3L_12528810_SNP [dm3] 3L_12535710_SNP [dm6]	G	A	2.706e^-4	0.906	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
2L	8287062	2L_8287062_SNP [dm3] 2L_8287062_SNP [dm6]	C	A	2.713e^-4	0.906	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7598124	2R_7598124_SNP [dm3] 2R_11710619_SNP [dm6]	A	G	2.722e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_zfh1
2R	20146267	2R_20146267_SNP [dm3] 2R_24258744_SNP [dm6]	T	A	2.722e^-4	0.906	INTRON CG3376
2L	1161426	2L_1161426_SNP [dm3] 2L_1161426_SNP [dm6]	T	C	2.723e^-4	0.906	SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7334904	2R_7334904_SNP [dm3] 2R_11447399_SNP [dm6]	C	A	2.727e^-4	0.906	INTRON qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14134633	2L_14134633_SNP [dm3] 2L_14134633_SNP [dm6]	G	T	2.728e^-4	0.906	UTR_5_PRIME CG17341	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8970568	2L_8970568_SNP [dm3] 2L_8970568_SNP [dm6]	A	G	2.729e^-4	0.906	UTR_3_PRIME CG18088 & 1 other DOWNSTREAM CG18088
2R	5923941	2R_5923941_SNP [dm3] 2R_10036436_SNP [dm6]	C	G	2.746e^-4	0.906	UTR_3_PRIME oys
3L	12852341	3L_12852341_SNP [dm3] 3L_12859241_SNP [dm6]	A	G	2.752e^-4	0.906	NON_SYNONYMOUS_CODING CG32107
2R	16994694	2R_16994694_INS [dm3] 2R_21107189_INS [dm6]	C	CA	2.756e^-4	0.906	INTRON ktub
X	16508972	X_16508972_SNP [dm3] X_16614939_SNP [dm6]	T	G	2.757e^-4	0.906	DOWNSTREAM CG9782 & 1 other INTERGENIC
2R	6131750	2R_6131750_SNP [dm3] 2R_10244245_SNP [dm6]	T	C	2.760e^-4	0.906	SYNONYMOUS_CODING Hdc
3L	17129467	3L_17129467_SNP [dm3] 3L_17136367_SNP [dm6]	A	C	2.763e^-4	0.906	INTRON Rbp6
2L	1305159	2L_1305159_INS [dm3] 2L_1305159_INS [dm6]	T	TT	2.764e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4617459	3L_4617459_SNP [dm3] 3L_4617459_SNP [dm6]	T	A	2.774e^-4	0.906	INTRON Src64B
2R	8435472	2R_8435472_SNP [dm3] 2R_12547967_SNP [dm6]	C	T	2.775e^-4	0.906	INTRON fra	TF binding site mE1_TFBS_cad
X	6413509	X_6413509_SNP [dm3] X_6519476_SNP [dm6]	T	C	2.781e^-4	0.906	INTRON CG42340
3L	13347237	3L_13347237_DEL [dm3] 3L_13354137_DEL [dm6]	ATAAG	T	2.788e^-4	0.906	INTRON CG17687
3L	12419678	3L_12419678_SNP [dm3] 3L_12426578_SNP [dm6]	C	A	2.802e^-4	0.906	INTRON toe
3R	11979526	3R_11979526_SNP [dm3] 3R_16153804_SNP [dm6]	T	C	2.803e^-4	0.906	INTERGENIC
3R	18482934	3R_18482934_SNP [dm3] 3R_22657212_SNP [dm6]	A	G	2.804e^-4	0.906	INTRON CG45058
3R	20337072	3R_20337072_SNP [dm3] 3R_24511350_SNP [dm6]	T	A	2.809e^-4	0.906	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5258852	2L_5258852_SNP [dm3] 2L_5258852_SNP [dm6]	G	C	2.819e^-4	0.906	UPSTREAM CR44744 INTRON tkv	TF binding site mE1_TFBS_cad
3L	5660855	3L_5660855_SNP [dm3] 3L_5667755_SNP [dm6]	A	G	2.822e^-4	0.906	INTRON sif
3R	25947645	3R_25947645_SNP [dm3] 3R_30121923_SNP [dm6]	G	A	2.826e^-4	0.906	DOWNSTREAM CG45072 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12687600	2R_12687600_SNP [dm3] 2R_16800095_SNP [dm6]	G	A	2.839e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12297891	3L_12297891_SNP [dm3] 3L_12304791_SNP [dm6]	G	A	2.844e^-4	0.906	INTERGENIC
2L	11928195	2L_11928195_SNP [dm3] 2L_11928195_SNP [dm6]	A	C	2.853e^-4	0.906	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	1378642	2L_1378642_SNP [dm3] 2L_1378642_SNP [dm6]	C	A	2.853e^-4	0.906	INTERGENIC
3L	10566478	3L_10566478_SNP [dm3] 3L_10573378_SNP [dm6]	G	A	2.873e^-4	0.906	INTRON A2bp1
3L	21259007	3L_21259007_SNP [dm3] 3L_21265907_SNP [dm6]	T	G	2.881e^-4	0.906	UTR_3_PRIME Eip78C DOWNSTREAM Eip78C & 1 other
3L	13344627	3L_13344627_SNP [dm3] 3L_13351527_SNP [dm6]	A	G	2.887e^-4	0.906	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
2L	19375713	2L_19375713_DEL [dm3] 2L_19375713_DEL [dm6]	GG	G	2.887e^-4	0.906	INTERGENIC
2R	5942577	2R_5942577_SNP [dm3] 2R_10055072_SNP [dm6]	C	T	2.898e^-4	0.906	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20254628	3L_20254628_SNP [dm3] 3L_20261528_SNP [dm6]	A	T	2.900e^-4	0.906	SPLICE_SITE_REGION rdgC INTRON rdgC
2R	5942234	2R_5942234_DEL [dm3] 2R_10054729_DEL [dm6]	TT	T	2.900e^-4	0.906	UPSTREAM Def INTRON magu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17986756	3R_17986756_SNP [dm3] 3R_22161034_SNP [dm6]	A	T	2.900e^-4	0.906	INTRON SKIP
2R	13112519	2R_13112519_SNP [dm3] 2R_17225014_SNP [dm6]	A	G	2.902e^-4	0.906	INTRON mbl
3L	1469480	3L_1469480_SNP [dm3] 3L_1469480_SNP [dm6]	C	A	2.905e^-4	0.906	DOWNSTREAM rho INTRON Ptp61F
3L	10635503	3L_10635503_SNP [dm3] 3L_10642403_SNP [dm6]	G	A	2.908e^-4	0.906	SYNONYMOUS_CODING CG14154 INTRON CG32066
2L	5955905	2L_5955905_SNP [dm3] 2L_5955905_SNP [dm6]	G	A	2.910e^-4	0.906	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
3R	13005527	3R_13005527_SNP [dm3] 3R_17179805_SNP [dm6]	C	G	2.919e^-4	0.906	INTRON Mur89F
2R	6140002	2R_6140002_SNP [dm3] 2R_10252497_SNP [dm6]	C	T	2.921e^-4	0.906	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	5350081	2L_5350081_SNP [dm3] 2L_5350081_SNP [dm6]	T	C	2.924e^-4	0.906	INTRON nompC
2L	14840095	2L_14840095_SNP [dm3] 2L_14840095_SNP [dm6]	A	T	2.931e^-4	0.906	DOWNSTREAM CR43805 INTERGENIC
2R	5915931	2R_5915931_SNP [dm3] 2R_10028426_SNP [dm6]	C	A	2.935e^-4	0.906	NON_SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407
3L	14493646	3L_14493646_SNP [dm3] 3L_14500546_SNP [dm6]	A	T	2.936e^-4	0.906	INTRON bbg
X	9083985	X_9083985_SNP [dm3] X_9189952_SNP [dm6]	A	G	2.946e^-4	0.906	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2L	5078566	2L_5078566_SNP [dm3] 2L_5078566_SNP [dm6]	A	G	2.955e^-4	0.906	SYNONYMOUS_CODING pgant5
3L	6634495	3L_6634495_SNP [dm3] 3L_6641395_SNP [dm6]	C	T	2.981e^-4	0.906	UPSTREAM CR45239 EXON CR45238
3L	2608904	3L_2608904_SNP [dm3] 3L_2608904_SNP [dm6]	T	C	2.992e^-4	0.906	DOWNSTREAM Pxn INTRON Pxn
3L	17919210	3L_17919210_SNP [dm3] 3L_17926110_SNP [dm6]	G	A	2.993e^-4	0.906	INTERGENIC
2L	4330099	2L_4330099_DEL [dm3] 2L_4330099_DEL [dm6]	AA	A	2.993e^-4	0.906	INTRON CG16857
2L	4330106	2L_4330106_SNP [dm3] 2L_4330106_SNP [dm6]	A	T	2.993e^-4	0.906	INTRON CG16857
3L	12161427	3L_12161427_SNP [dm3] 3L_12168327_SNP [dm6]	T	A	3.006e^-4	0.906	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10212312	2R_10212312_SNP [dm3] 2R_14324807_SNP [dm6]	A	C	3.007e^-4	0.906	INTRON Shroom
2R	9100751	2R_9100751_SNP [dm3] 2R_13213246_SNP [dm6]	A	G	3.009e^-4	0.906	SYNONYMOUS_CODING AQP
2L	7699578	2L_7699578_SNP [dm3] 2L_7699578_SNP [dm6]	T	C	3.011e^-4	0.906	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15193765	2L_15193765_DEL [dm3] 2L_15193765_DEL [dm6]	TTTTAGCCA	G	3.012e^-4	0.906	INTRON CG4168
3L	12193008	3L_12193008_DEL [dm3] 3L_12199908_DEL [dm6]	TGT	T	3.017e^-4	0.906	DOWNSTREAM CG11529 & 1 other INTERGENIC
3L	12193014	3L_12193014_SNP [dm3] 3L_12199914_SNP [dm6]	C	T	3.017e^-4	0.906	DOWNSTREAM CG11529 & 1 other INTERGENIC
3L	12193021	3L_12193021_SNP [dm3] 3L_12199921_SNP [dm6]	A	T	3.017e^-4	0.906	DOWNSTREAM CG11529 & 1 other INTERGENIC
2L	15192596	2L_15192596_SNP [dm3] 2L_15192596_SNP [dm6]	T	C	3.023e^-4	0.906	INTRON CG4168
2L	14249827	2L_14249827_SNP [dm3] 2L_14249827_SNP [dm6]	A	T	3.023e^-4	0.906	INTERGENIC
3R	12325129	3R_12325129_SNP [dm3] 3R_16499407_SNP [dm6]	G	A	3.026e^-4	0.906	SYNONYMOUS_CODING decay UPSTREAM Gr89a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13892344	3R_13892344_SNP [dm3] 3R_18066622_SNP [dm6]	A	T	3.027e^-4	0.906	INTERGENIC
2R	14809602	2R_14809602_SNP [dm3] 2R_18922097_SNP [dm6]	A	C	3.033e^-4	0.906	INTRON sano
3L	3593751	3L_3593751_SNP [dm3] 3L_3593751_SNP [dm6]	T	A	3.036e^-4	0.906	UPSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3760436	X_3760436_SNP [dm3] X_3866403_SNP [dm6]	T	C	3.039e^-4	0.906	INTRON yin	TF binding site mE1_TFBS_Trl
3L	12807132	3L_12807132_SNP [dm3] 3L_12814032_SNP [dm6]	G	T	3.054e^-4	0.906	UPSTREAM CG42588 & 1 other DOWNSTREAM Sap130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7261608	X_7261608_SNP [dm3] X_7367575_SNP [dm6]	A	C	3.056e^-4	0.906	INTRON CG1677 & 1 other
3L	10596769	3L_10596769_SNP [dm3] 3L_10603669_SNP [dm6]	T	A	3.057e^-4	0.906	INTERGENIC
2R	16527916	2R_16527916_SNP [dm3] 2R_20640411_SNP [dm6]	C	T	3.060e^-4	0.906	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5149576	3L_5149576_DEL [dm3] 3L_5156476_DEL [dm6]	TT	T	3.062e^-4	0.906	UTR_3_PRIME shep
2L	8368984	2L_8368984_SNP [dm3] 2L_8368984_SNP [dm6]	G	C	3.062e^-4	0.906	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2L	3122535	2L_3122535_SNP [dm3] 2L_3122535_SNP [dm6]	A	T	3.071e^-4	0.906	INTRON toc
X	4944927	X_4944927_SNP [dm3] X_5050894_SNP [dm6]	C	T	3.076e^-4	0.906	INTRON CR44833 & 1 other
2L	12176006	2L_12176006_SNP [dm3] 2L_12176006_SNP [dm6]	G	A	3.085e^-4	0.906	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2R	8785183	2R_8785183_SNP [dm3] 2R_12897678_SNP [dm6]	A	T	3.092e^-4	0.906	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20252471	3L_20252471_SNP [dm3] 3L_20259371_SNP [dm6]	A	G	3.093e^-4	0.906	UPSTREAM rdgC INTRON rdgC
2L	9553752	2L_9553752_SNP [dm3] 2L_9553752_SNP [dm6]	C	A	3.097e^-4	0.906	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7174774	2L_7174774_SNP [dm3] 2L_7174774_SNP [dm6]	G	C	3.102e^-4	0.906	EXON CR44610
X	7261607	X_7261607_SNP [dm3] X_7367574_SNP [dm6]	G	T	3.103e^-4	0.906	INTRON CG1677 & 1 other
2R	5918755	2R_5918755_SNP [dm3] 2R_10031250_SNP [dm6]	C	T	3.109e^-4	0.906	DOWNSTREAM CG12128 INTRON CG1407	TF binding site mE1_TFBS_sens
3L	12852638	3L_12852638_SNP [dm3] 3L_12859538_SNP [dm6]	T	G	3.113e^-4	0.906	NON_SYNONYMOUS_CODING CG32107
2R	5933811	2R_5933811_SNP [dm3] 2R_10046306_SNP [dm6]	T	A	3.114e^-4	0.906	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	20063596	3R_20063596_SNP [dm3] 3R_24237874_SNP [dm6]	G	A	3.117e^-4	0.906	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad
2R	5933537	2R_5933537_SNP [dm3] 2R_10046032_SNP [dm6]	A	C	3.120e^-4	0.906	DOWNSTREAM CR44295 INTRON oys
X	19906075	X_19906075_SNP [dm3] X_20012042_SNP [dm6]	C	G	3.121e^-4	0.906	INTRON Dop2R
2L	7699423	2L_7699423_SNP [dm3] 2L_7699423_SNP [dm6]	G	C	3.121e^-4	0.906	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3L	5496518	3L_5496518_DEL [dm3] 3L_5503418_DEL [dm6]	GG	G	3.128e^-4	0.906	DOWNSTREAM CG34342 INTERGENIC
3L	12808809	3L_12808809_SNP [dm3] 3L_12815709_SNP [dm6]	C	T	3.128e^-4	0.906	INTRON CG42588
2R	15035964	2R_15035964_SNP [dm3] 2R_19148459_SNP [dm6]	T	A	3.131e^-4	0.906	INTRON ena	TF binding site BDTNP1_TFBS_dl
3R	22623245	3R_22623245_SNP [dm3] 3R_26797523_SNP [dm6]	T	A	3.132e^-4	0.906	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1058604	2L_1058604_SNP [dm3] 2L_1058604_SNP [dm6]	G	A	3.133e^-4	0.906	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	15540284	3R_15540284_SNP [dm3] 3R_19714562_SNP [dm6]	T	A	3.133e^-4	0.906	DOWNSTREAM CG34286 INTERGENIC
2L	4237213	2L_4237213_INS [dm3] 2L_4237213_INS [dm6]	A	AA	3.139e^-4	0.906	INTERGENIC
2R	17048640	2R_17048640_SNP [dm3] 2R_21161135_SNP [dm6]	A	T	3.140e^-4	0.906	UPSTREAM CG30389 & 2 others DOWNSTREAM tRNA:G3:57BCa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	7261613	X_7261613_SNP [dm3] X_7367580_SNP [dm6]	G	C	3.140e^-4	0.906	INTRON CG1677 & 1 other
3L	10596760	3L_10596760_SNP [dm3] 3L_10603660_SNP [dm6]	T	A	3.140e^-4	0.906	INTERGENIC
2L	8068653	2L_8068653_SNP [dm3] 2L_8068653_SNP [dm6]	C	T	3.141e^-4	0.906	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23249204	3R_23249204_INS [dm3] 3R_27423482_INS [dm6]	C	CGGCAC	3.152e^-4	0.906	INTRON side
2R	13674631	2R_13674631_SNP [dm3] 2R_17787126_SNP [dm6]	A	G	3.154e^-4	0.906	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	15441093	2L_15441093_SNP [dm3] 2L_15441093_SNP [dm6]	T	C	3.155e^-4	0.906	UPSTREAM CR44862 INTERGENIC
2L	4330130	2L_4330130_SNP [dm3] 2L_4330130_SNP [dm6]	C	A	3.158e^-4	0.906	INTRON CG16857
3L	14581509	3L_14581509_SNP [dm3] 3L_14588409_SNP [dm6]	A	G	3.163e^-4	0.906	INTRON HGTX
X	10090496	X_10090496_SNP [dm3] X_10196463_SNP [dm6]	T	A	3.183e^-4	0.906	INTRON CR44894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15196816	2R_15196816_SNP [dm3] 2R_19309311_SNP [dm6]	G	A	3.185e^-4	0.906	INTRON EndoB
3L	15280504	3L_15280504_SNP [dm3] 3L_15287404_SNP [dm6]	A	T	3.188e^-4	0.906	INTERGENIC
2R	16110843	2R_16110843_SNP [dm3] 2R_20223338_SNP [dm6]	C	T	3.191e^-4	0.906	INTERGENIC
X	10090531	X_10090531_SNP [dm3] X_10196498_SNP [dm6]	T	C	3.191e^-4	0.906	INTRON CR44894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8435111	2R_8435111_SNP [dm3] 2R_12547606_SNP [dm6]	C	A	3.192e^-4	0.906	INTRON fra
2L	6797587	2L_6797587_DEL [dm3] 2L_6797587_DEL [dm6]	GAATAGCCGTG...	G	3.196e^-4	0.906	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	20634197	X_20634197_SNP [dm3] X_20763170_SNP [dm6]	C	G	3.198e^-4	0.906	UTR_3_PRIME shakB
2L	15875933	2L_15875933_SNP [dm3] 2L_15875933_SNP [dm6]	T	G	3.198e^-4	0.906	INTERGENIC
3R	17146180	3R_17146180_SNP [dm3] 3R_21320458_SNP [dm6]	T	C	3.199e^-4	0.906	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
2L	4682021	2L_4682021_SNP [dm3] 2L_4682021_SNP [dm6]	G	A	3.201e^-4	0.906	UPSTREAM CG11929 INTERGENIC
2R	14475574	2R_14475574_SNP [dm3] 2R_18588069_SNP [dm6]	C	T	3.205e^-4	0.906	INTRON GEFmeso
2L	12115477	2L_12115477_SNP [dm3] 2L_12115477_SNP [dm6]	T	G	3.205e^-4	0.906	INTRON CG17211
X	7261612	X_7261612_SNP [dm3] X_7367579_SNP [dm6]	A	T	3.210e^-4	0.906	INTRON CG1677 & 1 other
2L	15031265	2L_15031265_SNP [dm3] 2L_15031265_SNP [dm6]	A	G	3.213e^-4	0.906	SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3L	14493648	3L_14493648_INS [dm3] 3L_14500548_INS [dm6]	C	CGACGTTTTTGAATAT...	3.213e^-4	0.906	INTRON bbg
3L	10762573	3L_10762573_SNP [dm3] 3L_10769473_SNP [dm6]	T	G	3.214e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3122270	2L_3122270_SNP [dm3] 2L_3122270_SNP [dm6]	A	G	3.219e^-4	0.906	INTRON toc
3L	7085339	3L_7085339_SNP [dm3] 3L_7092239_SNP [dm6]	T	A	3.223e^-4	0.906	UPSTREAM Cpr65Ec INTERGENIC
2L	13885207	2L_13885207_SNP [dm3] 2L_13885207_SNP [dm6]	G	A	3.227e^-4	0.906	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13674601	2R_13674601_SNP [dm3] 2R_17787096_SNP [dm6]	A	G	3.232e^-4	0.906	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
X	16760981	X_16760981_SNP [dm3] X_16866948_SNP [dm6]	G	T	3.235e^-4	0.906	INTRON CG13003
X	12406177	X_12406177_SNP [dm3] X_12512144_SNP [dm6]	C	A	3.237e^-4	0.906	INTRON CG2556
2R	15196810	2R_15196810_SNP [dm3] 2R_19309305_SNP [dm6]	G	A	3.239e^-4	0.906	INTRON EndoB
X	5048619	X_5048619_SNP [dm3] X_5154586_SNP [dm6]	G	T	3.242e^-4	0.906	INTRON rg & 1 other
2R	13185849	2R_13185849_SNP [dm3] 2R_17298344_SNP [dm6]	G	A	3.252e^-4	0.906	INTRON mbl
3R	5142200	3R_5142200_DEL [dm3] 3R_9316478_DEL [dm6]	TGCCATAGCT	T	3.254e^-4	0.906	INTRON CG8861
X	3157110	X_3157110_SNP [dm3] X_3263077_SNP [dm6]	C	T	3.255e^-4	0.906	INTRON dnc
3R	10582464	3R_10582464_SNP [dm3] 3R_14756742_SNP [dm6]	C	T	3.257e^-4	0.906	INTRON jvl
3R	20067335	3R_20067335_SNP [dm3] 3R_24241613_SNP [dm6]	T	A	3.259e^-4	0.906	INTRON mask	TF binding site mE1_TFBS_cad
3L	19232274	3L_19232274_SNP [dm3] 3L_19239174_SNP [dm6]	C	T	3.270e^-4	0.906	DOWNSTREAM CR43892 INTERGENIC
2L	5251765	2L_5251765_SNP [dm3] 2L_5251765_SNP [dm6]	C	G	3.275e^-4	0.906	INTRON tkv
X	10090504	X_10090504_SNP [dm3] X_10196471_SNP [dm6]	T	C	3.285e^-4	0.906	INTRON CR44894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5359320	2L_5359320_SNP [dm3] 2L_5359320_SNP [dm6]	A	G	3.288e^-4	0.906	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6700723	3L_6700723_SNP [dm3] 3L_6707623_SNP [dm6]	T	G	3.290e^-4	0.906	UTR_5_PRIME CG8519 INTRON CG8519	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5796974	2L_5796974_SNP [dm3] 2L_5796974_SNP [dm6]	A	T	3.291e^-4	0.906	INTRON CG9171
3L	822095	3L_822095_SNP [dm3] 3L_822095_SNP [dm6]	C	G	3.293e^-4	0.906	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14139332	3R_14139332_SNP [dm3] 3R_18313610_SNP [dm6]	A	G	3.296e^-4	0.906	INTRON PKD
3L	7455323	3L_7455323_SNP [dm3] 3L_7462223_SNP [dm6]	A	G	3.300e^-4	0.906	INTERGENIC
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	3.305e^-4	0.906	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
2L	3435331	2L_3435331_SNP [dm3] 2L_3435331_SNP [dm6]	A	T	3.308e^-4	0.906	INTERGENIC
2L	7930494	2L_7930494_SNP [dm3] 2L_7930494_SNP [dm6]	C	A	3.310e^-4	0.906	INTRON Snoo
3L	10632868	3L_10632868_SNP [dm3] 3L_10639768_SNP [dm6]	C	T	3.320e^-4	0.906	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
X	16553128	X_16553128_SNP [dm3] X_16659095_SNP [dm6]	G	A	3.321e^-4	0.906	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo
2L	14141641	2L_14141641_SNP [dm3] 2L_14141641_SNP [dm6]	G	C	3.329e^-4	0.906	INTRON CG17341
X	7086276	X_7086276_SNP [dm3] X_7192243_SNP [dm6]	A	G	3.333e^-4	0.906	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	20133657	X_20133657_INS [dm3] X_20262631_INS [dm6]	A	ATTAGTACACAATA...	3.335e^-4	0.906	INTERGENIC
3L	10242272	3L_10242272_SNP [dm3] 3L_10249172_SNP [dm6]	A	C	3.336e^-4	0.906	UPSTREAM CR44540 INTERGENIC
2R	17546225	2R_17546225_SNP [dm3] 2R_21658720_SNP [dm6]	A	T	3.337e^-4	0.906	NON_SYNONYMOUS_CODING CG10320 DOWNSTREAM Rae1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14165410	2R_14165410_SNP [dm3] 2R_18277905_SNP [dm6]	C	T	3.340e^-4	0.906	UPSTREAM Ote DOWNSTREAM sbb INTRON pen-2	TF binding site mE1_TFBS_HSA
2L	7923800	2L_7923800_SNP [dm3] 2L_7923800_SNP [dm6]	T	G	3.342e^-4	0.906	INTRON Snoo
2L	13775468	2L_13775468_SNP [dm3] 2L_13775468_SNP [dm6]	T	C	3.342e^-4	0.906	SPLICE_SITE_REGION CG9008 INTRON CG9008	TF binding site mE1_TFBS_inv
2L	4286407	2L_4286407_SNP [dm3] 2L_4286407_SNP [dm6]	T	C	3.343e^-4	0.906	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19653582	3R_19653582_SNP [dm3] 3R_23827860_SNP [dm6]	A	G	3.346e^-4	0.906	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10258725	2L_10258725_SNP [dm3] 2L_10258725_SNP [dm6]	C	T	3.352e^-4	0.906	SPLICE_SITE_REGION Pten INTRON Pten
3L	8742679	3L_8742679_SNP [dm3] 3L_8749579_SNP [dm6]	G	A	3.365e^-4	0.906	SPLICE_SITE_REGION CG13306 UTR_5_PRIME CG13306	TF binding site mE1_TFBS_bab1
X	6944752	X_6944752_SNP [dm3] X_7050719_SNP [dm6]	G	A	3.368e^-4	0.906	DOWNSTREAM nullo INTRON CG12541
2L	2343566	2L_2343566_SNP [dm3] 2L_2343566_SNP [dm6]	A	G	3.371e^-4	0.906	INTRON CG9967 & 1 other
2L	4009240	2L_4009240_SNP [dm3] 2L_4009240_SNP [dm6]	T	C	3.380e^-4	0.906	DOWNSTREAM CG43774 INTERGENIC
3R	17507977	3R_17507977_SNP [dm3] 3R_21682255_SNP [dm6]	G	A	3.384e^-4	0.906	INTRON CG31176
2L	15193775	2L_15193775_SNP [dm3] 2L_15193775_SNP [dm6]	T	C	3.386e^-4	0.906	INTRON CG4168
3R	17725201	3R_17725201_SNP [dm3] 3R_21899479_SNP [dm6]	A	T	3.391e^-4	0.906	INTRON CG6678
3R	14528987	3R_14528987_SNP [dm3] 3R_18703265_SNP [dm6]	T	C	3.395e^-4	0.906	INTERGENIC
3L	7002479	3L_7002479_SNP [dm3] 3L_7009379_SNP [dm6]	T	C	3.397e^-4	0.906	INTRON Mp
2R	17453456	2R_17453456_SNP [dm3] 2R_21565951_SNP [dm6]	A	T	3.398e^-4	0.906	INTRON CG10440
2L	11064362	2L_11064362_SNP [dm3] 2L_11064362_SNP [dm6]	C	G	3.403e^-4	0.906	INTRON Samuel	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12506977	X_12506977_SNP [dm3] X_12612944_SNP [dm6]	A	G	3.403e^-4	0.906	DOWNSTREAM CR45621 INTRON CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12337964	2L_12337964_SNP [dm3] 2L_12337964_SNP [dm6]	C	A	3.426e^-4	0.906	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18538522	2R_18538522_INS [dm3] 2R_22651017_INS [dm6]	C	CT	3.426e^-4	0.906	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20421893	2R_20421893_SNP [dm3] 2R_24534370_SNP [dm6]	G	A	3.427e^-4	0.906	SPLICE_SITE_REGION CG4622 DOWNSTREAM CG13585 INTRON CG4622	TF binding site mE1_TFBS_HSA
2L	7699517	2L_7699517_SNP [dm3] 2L_7699517_SNP [dm6]	C	G	3.433e^-4	0.906	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9553409	2L_9553409_SNP [dm3] 2L_9553409_SNP [dm6]	C	T	3.433e^-4	0.906	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6131099	2R_6131099_SNP [dm3] 2R_10243594_SNP [dm6]	T	C	3.436e^-4	0.906	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
3R	12798934	3R_12798934_SNP [dm3] 3R_16973212_SNP [dm6]	C	T	3.437e^-4	0.906	UPSTREAM Abd-B INTERGENIC
3L	12852622	3L_12852622_SNP [dm3] 3L_12859522_SNP [dm6]	T	A	3.442e^-4	0.906	SYNONYMOUS_CODING CG32107
3L	10635494	3L_10635494_SNP [dm3] 3L_10642394_SNP [dm6]	C	T	3.450e^-4	0.906	SYNONYMOUS_CODING CG14154 INTRON CG32066
3L	17919115	3L_17919115_SNP [dm3] 3L_17926015_SNP [dm6]	G	C	3.456e^-4	0.906	INTERGENIC
2L	1059385	2L_1059385_INS [dm3] 2L_1059385_INS [dm6]	T	TGGA	3.458e^-4	0.906	INTRON S
3L	7269868	3L_7269868_SNP [dm3] 3L_7276768_SNP [dm6]	C	T	3.462e^-4	0.906	INTRON unc-13-4A
3L	2034123	3L_2034123_SNP [dm3] 3L_2034123_SNP [dm6]	C	A	3.470e^-4	0.906	INTERGENIC
3R	14024885	3R_14024885_SNP [dm3] 3R_18199163_SNP [dm6]	G	A	3.475e^-4	0.906	UTR_5_PRIME Ssdp UPSTREAM CG7985 INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10578846	3L_10578846_INS [dm3] 3L_10585746_INS [dm6]	T	TGGTATTCATAA...	3.478e^-4	0.906	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	377994	2L_377994_SNP [dm3] 2L_377994_SNP [dm6]	C	G	3.482e^-4	0.906	UPSTREAM al INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7094659	3L_7094659_SNP [dm3] 3L_7101559_SNP [dm6]	T	A	3.486e^-4	0.906	INTRON form3
X	16760975	X_16760975_SNP [dm3] X_16866942_SNP [dm6]	C	T	3.491e^-4	0.906	INTRON CG13003
3L	2798340	3L_2798340_SNP [dm3] 3L_2798340_SNP [dm6]	T	G	3.492e^-4	0.906	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7247568	3L_7247568_SNP [dm3] 3L_7254468_SNP [dm6]	T	C	3.508e^-4	0.906	INTRON CG14830
2L	9010335	2L_9010335_SNP [dm3] 2L_9010335_SNP [dm6]	T	G	3.510e^-4	0.906	UPSTREAM CG9568 INTERGENIC
2R	18538526	2R_18538526_SNP [dm3] 2R_22651021_SNP [dm6]	C	T	3.512e^-4	0.906	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6281530	2L_6281530_SNP [dm3] 2L_6281530_SNP [dm6]	T	C	3.522e^-4	0.906	INTRON Ddr
3L	20252691	3L_20252691_DEL [dm3] 3L_20259591_DEL [dm6]	GG	G	3.533e^-4	0.906	UPSTREAM rdgC INTRON rdgC	transposable element FlyBase
2R	5904191	2R_5904191_SNP [dm3] 2R_10016686_SNP [dm6]	A	T	3.533e^-4	0.906	INTRON Pka-R2
2L	5774052	2L_5774052_SNP [dm3] 2L_5774052_SNP [dm6]	C	A	3.535e^-4	0.906	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	7261610	X_7261610_SNP [dm3] X_7367577_SNP [dm6]	C	T	3.538e^-4	0.906	INTRON CG1677 & 1 other
3L	14493610	3L_14493610_SNP [dm3] 3L_14500510_SNP [dm6]	C	T	3.540e^-4	0.906	INTRON bbg
3R	25758821	3R_25758821_SNP [dm3] 3R_29933099_SNP [dm6]	G	A	3.541e^-4	0.906	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14152762	3R_14152762_SNP [dm3] 3R_18327040_SNP [dm6]	A	T	3.551e^-4	0.906	INTRON CG31235
2R	6997636	2R_6997636_SNP [dm3] 2R_11110131_SNP [dm6]	T	C	3.553e^-4	0.906	INTRON luna
2L	20136741	2L_20136741_SNP [dm3] 2L_20136741_SNP [dm6]	G	T	3.558e^-4	0.906	INTERGENIC
2L	9875797	2L_9875797_SNP [dm3] 2L_9875797_SNP [dm6]	T	A	3.558e^-4	0.906	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
3L	19645008	3L_19645008_SNP [dm3] 3L_19651908_SNP [dm6]	G	A	3.564e^-4	0.906	INTRON tey	TF binding site mE1_TFBS_HSA
3R	11455004	3R_11455004_SNP [dm3] 3R_15629282_SNP [dm6]	T	C	3.572e^-4	0.906	INTERGENIC
2L	5357107	2L_5357107_SNP [dm3] 2L_5357107_SNP [dm6]	A	G	3.575e^-4	0.906	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_cad
2R	7598069	2R_7598069_SNP [dm3] 2R_11710564_SNP [dm6]	G	A	3.579e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	5887895	2L_5887895_SNP [dm3] 2L_5887895_SNP [dm6]	T	C	3.597e^-4	0.906	UPSTREAM CR44578 INTRON CR44577
2L	16931358	2L_16931358_SNP [dm3] 2L_16931358_SNP [dm6]	A	G	3.602e^-4	0.906	INTERGENIC
3L	1636639	3L_1636639_SNP [dm3] 3L_1636639_SNP [dm6]	T	C	3.607e^-4	0.906	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6927278	3R_6927278_SNP [dm3] 3R_11101556_SNP [dm6]	C	T	3.609e^-4	0.906	EXON CR45579
2R	16527784	2R_16527784_SNP [dm3] 2R_20640279_SNP [dm6]	G	A	3.618e^-4	0.906	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13826498	2L_13826498_SNP [dm3] 2L_13826498_SNP [dm6]	T	C	3.620e^-4	0.906	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17986703	3R_17986703_SNP [dm3] 3R_22160981_SNP [dm6]	A	G	3.638e^-4	0.906	INTRON SKIP
X	13206387	X_13206387_SNP [dm3] X_13312354_SNP [dm6]	T	A	3.650e^-4	0.906	INTRON IP3K2
2L	4224496	2L_4224496_SNP [dm3] 2L_4224496_SNP [dm6]	A	G	3.656e^-4	0.906	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10632640	3L_10632640_SNP [dm3] 3L_10639540_SNP [dm6]	A	G	3.656e^-4	0.906	UTR_3_PRIME CG8009 UPSTREAM CG18628 DOWNSTREAM CG32066
3L	13735848	3L_13735848_SNP [dm3] 3L_13742748_SNP [dm6]	G	C	3.673e^-4	0.906	INTRON bru-3
2L	15820914	2L_15820914_SNP [dm3] 2L_15820914_SNP [dm6]	G	A	3.676e^-4	0.906	INTERGENIC
X	11500882	X_11500882_SNP [dm3] X_11606849_SNP [dm6]	A	G	3.680e^-4	0.906	SYNONYMOUS_CODING CG2247 DOWNSTREAM rho-4	TF binding site BDTNP1_TFBS_sna
2R	7334917	2R_7334917_SNP [dm3] 2R_11447412_SNP [dm6]	T	G	3.682e^-4	0.906	INTRON qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8785223	2R_8785223_SNP [dm3] 2R_12897718_SNP [dm6]	A	C	3.693e^-4	0.906	SPLICE_SITE_REGION vg INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20213611	2R_20213611_SNP [dm3] 2R_24326088_SNP [dm6]	A	G	3.694e^-4	0.906	INTRON CR44810
3L	5459873	3L_5459873_INS [dm3] 3L_5466773_INS [dm6]	C	CC	3.698e^-4	0.906	INTERGENIC
X	3760659	X_3760659_SNP [dm3] X_3866626_SNP [dm6]	C	G	3.699e^-4	0.906	UTR_5_PRIME yin INTRON yin	TF binding site mE1_TFBS_Trl
3L	10251346	3L_10251346_SNP [dm3] 3L_10258246_SNP [dm6]	C	A	3.701e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12531479	3L_12531479_SNP [dm3] 3L_12538379_SNP [dm6]	C	T	3.702e^-4	0.906	NON_SYNONYMOUS_CODING sowah SYNONYMOUS_CODING sowah	TF binding site mE1_TFBS_cad
X	2822065	X_2822065_SNP [dm3] X_2928032_SNP [dm6]	T	A	3.703e^-4	0.906	UPSTREAM CG14424 INTRON kirre
2R	5901891	2R_5901891_SNP [dm3] 2R_10014386_SNP [dm6]	T	A	3.727e^-4	0.906	INTRON Pka-R2
3R	25270204	3R_25270204_SNP [dm3] 3R_29444482_SNP [dm6]	A	G	3.732e^-4	0.906	INTRON Ptp99A
2L	4185350	2L_4185350_SNP [dm3] 2L_4185350_SNP [dm6]	G	C	3.738e^-4	0.906	UPSTREAM CR44057 DOWNSTREAM CG31961 INTERGENIC
2R	13814533	2R_13814533_SNP [dm3] 2R_17927028_SNP [dm6]	G	A	3.744e^-4	0.906	DOWNSTREAM Elk INTERGENIC
2R	17447676	2R_17447676_SNP [dm3] 2R_21560171_SNP [dm6]	G	T	3.745e^-4	0.906	DOWNSTREAM CG10440 & 1 other INTERGENIC
2R	12687801	2R_12687801_SNP [dm3] 2R_16800296_SNP [dm6]	C	A	3.751e^-4	0.906	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14598850	2R_14598850_SNP [dm3] 2R_18711345_SNP [dm6]	T	G	3.751e^-4	0.906	UPSTREAM pncr016:2R & 1 other INTERGENIC
X	9391473	X_9391473_SNP [dm3] X_9497440_SNP [dm6]	C	T	3.766e^-4	0.906	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	5908877	2R_5908877_SNP [dm3] 2R_10021372_SNP [dm6]	T	C	3.767e^-4	0.906	INTRON Pka-R2
2R	5926621	2R_5926621_SNP [dm3] 2R_10039116_SNP [dm6]	T	C	3.772e^-4	0.906	INTRON oys
3R	11921623	3R_11921623_SNP [dm3] 3R_16095901_SNP [dm6]	G	T	3.775e^-4	0.906	SYNONYMOUS_CODING Mhcl
3L	3594011	3L_3594011_SNP [dm3] 3L_3594011_SNP [dm6]	G	A	3.778e^-4	0.906	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9391773	X_9391773_SNP [dm3] X_9497740_SNP [dm6]	T	C	3.783e^-4	0.906	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13908779	3L_13908779_SNP [dm3] 3L_13915679_SNP [dm6]	C	A	3.785e^-4	0.906	INTRON Rgl
2L	20120176	2L_20120176_SNP [dm3] 2L_20120176_SNP [dm6]	T	C	3.801e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	2684980	3L_2684980_SNP [dm3] 3L_2684980_SNP [dm6]	T	C	3.802e^-4	0.906	INTRON Fife
2L	12942041	2L_12942041_SNP [dm3] 2L_12942041_SNP [dm6]	T	C	3.805e^-4	0.906	INTERGENIC
2L	862237	2L_862237_SNP [dm3] 2L_862237_SNP [dm6]	G	T	3.807e^-4	0.906	SYNONYMOUS_CODING aru DOWNSTREAM CG13950	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14501516	3L_14501516_SNP [dm3] 3L_14508416_SNP [dm6]	G	A	3.809e^-4	0.906	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17448203	2R_17448203_SNP [dm3] 2R_21560698_SNP [dm6]	C	A	3.809e^-4	0.906	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
2L	7475922	2L_7475922_SNP [dm3] 2L_7475922_SNP [dm6]	A	C	3.811e^-4	0.906	INTRON Ziz & 1 other
3R	14529172	3R_14529172_SNP [dm3] 3R_18703450_SNP [dm6]	C	A	3.816e^-4	0.906	INTERGENIC
2L	17540596	2L_17540596_SNP [dm3] 2L_17540596_SNP [dm6]	G	T	3.816e^-4	0.906	INTERGENIC
2R	7371016	2R_7371016_SNP [dm3] 2R_11483511_SNP [dm6]	G	T	3.817e^-4	0.906	INTRON inv
3L	8358530	3L_8358530_SNP [dm3] 3L_8365430_SNP [dm6]	C	T	3.825e^-4	0.906	INTERGENIC
2L	8070404	2L_8070404_SNP [dm3] 2L_8070404_SNP [dm6]	T	A	3.829e^-4	0.906	INTRON poe
2L	8072345	2L_8072345_SNP [dm3] 2L_8072345_SNP [dm6]	G	C	3.837e^-4	0.906	SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6130856	2R_6130856_SNP [dm3] 2R_10243351_SNP [dm6]	C	T	3.837e^-4	0.906	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
3L	8889550	3L_8889550_SNP [dm3] 3L_8896450_SNP [dm6]	G	A	3.840e^-4	0.906	INTRON TrpA1	TF binding site mE1_TFBS_cad
3L	19274644	3L_19274644_SNP [dm3] 3L_19281544_SNP [dm6]	A	T	3.840e^-4	0.906	UTR_3_PRIME Gbs-76A UPSTREAM CG14089 DOWNSTREAM Gbs-76A
X	10608699	X_10608699_SNP [dm3] X_10714666_SNP [dm6]	A	G	3.840e^-4	0.906	SYNONYMOUS_CODING CG32676	TF binding site mE1_TFBS_chinmo
3L	2761497	3L_2761497_SNP [dm3] 3L_2761497_SNP [dm6]	G	C	3.842e^-4	0.906	INTRON Mrtf	TF binding site mE1_TFBS_cad
X	9208564	X_9208564_SNP [dm3] X_9314531_SNP [dm6]	A	C	3.844e^-4	0.906	UPSTREAM CR44534 INTERGENIC
3R	10048515	3R_10048515_SNP [dm3] 3R_14222793_SNP [dm6]	C	T	3.848e^-4	0.906	SYNONYMOUS_CODING Sp212
2L	20080756	2L_20080756_SNP [dm3] 2L_20080756_SNP [dm6]	C	A	3.849e^-4	0.906	UPSTREAM fok DOWNSTREAM fok INTRON neb & 1 other	TF binding site mE1_TFBS_inv
X	1629663	X_1629663_SNP [dm3] X_1735630_SNP [dm6]	T	C	3.850e^-4	0.906	DOWNSTREAM Scgdelta INTERGENIC
X	14470242	X_14470242_SNP [dm3] X_14576209_SNP [dm6]	G	C	3.857e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2975381	3L_2975381_SNP [dm3] 3L_2975381_SNP [dm6]	T	C	3.861e^-4	0.906	DOWNSTREAM CR44530 INTERGENIC
2L	20119385	2L_20119385_SNP [dm3] 2L_20119385_SNP [dm6]	T	A	3.865e^-4	0.906	INTERGENIC
3L	8074346	3L_8074346_SNP [dm3] 3L_8081246_SNP [dm6]	A	G	3.868e^-4	0.906	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9084045	X_9084045_SNP [dm3] X_9190012_SNP [dm6]	G	A	3.869e^-4	0.906	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	7086177	X_7086177_SNP [dm3] X_7192144_SNP [dm6]	G	A	3.871e^-4	0.906	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	15007417	3L_15007417_SNP [dm3] 3L_15014317_SNP [dm6]	T	A	3.879e^-4	0.906	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	20854718	X_20854718_SNP [dm3] X_20983691_SNP [dm6]	T	C	3.883e^-4	0.906	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	21481197	3L_21481197_SNP [dm3] 3L_21488097_SNP [dm6]	T	C	3.885e^-4	0.906	DOWNSTREAM Neu2 INTRON Neu2	transposable element FlyBase
2R	19103297	2R_19103297_SNP [dm3] 2R_23215774_SNP [dm6]	A	G	3.893e^-4	0.906	INTERGENIC
X	3543531	X_3543531_SNP [dm3] X_3649498_SNP [dm6]	A	C	3.907e^-4	0.906	INTRON AstA-R1
3R	15970323	3R_15970323_SNP [dm3] 3R_20144601_SNP [dm6]	T	A	3.913e^-4	0.906	INTERGENIC
3R	9527708	3R_9527708_SNP [dm3] 3R_13701986_SNP [dm6]	G	C	3.914e^-4	0.906	SYNONYMOUS_CODING ninaB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5877229	2L_5877229_SNP [dm3] 2L_5877229_SNP [dm6]	C	A	3.920e^-4	0.906	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16318178	2R_16318178_SNP [dm3] 2R_20430673_SNP [dm6]	T	G	3.924e^-4	0.906	INTRON CG12484
2L	11609837	2L_11609837_SNP [dm3] 2L_11609837_SNP [dm6]	C	A	3.926e^-4	0.906	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	7327143	3L_7327143_SNP [dm3] 3L_7334043_SNP [dm6]	C	A	3.929e^-4	0.906	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6735011	2R_6735011_SNP [dm3] 2R_10847506_SNP [dm6]	T	C	3.931e^-4	0.906	INTRON CG30015
2L	14516968	2L_14516968_SNP [dm3] 2L_14516968_SNP [dm6]	G	C	3.935e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8279972	3L_8279972_SNP [dm3] 3L_8286872_SNP [dm6]	T	A	3.936e^-4	0.906	UPSTREAM cert INTRON cert
2L	7959092	2L_7959092_SNP [dm3] 2L_7959092_SNP [dm6]	C	T	3.938e^-4	0.906	INTRON Snoo
2L	1445957	2L_1445957_SNP [dm3] 2L_1445957_SNP [dm6]	G	A	3.945e^-4	0.906	INTERGENIC
2R	8188140	2R_8188140_SNP [dm3] 2R_12300635_SNP [dm6]	C	T	3.947e^-4	0.906	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10588231	3L_10588231_DEL [dm3] 3L_10595131_DEL [dm6]	GCCG	G	3.954e^-4	0.906	INTERGENIC
2R	8439903	2R_8439903_SNP [dm3] 2R_12552398_SNP [dm6]	T	C	3.965e^-4	0.906	INTRON fra
2L	9046017	2L_9046017_SNP [dm3] 2L_9046017_SNP [dm6]	G	A	3.966e^-4	0.906	INTERGENIC
2L	17510733	2L_17510733_SNP [dm3] 2L_17510733_SNP [dm6]	A	G	3.967e^-4	0.906	SYNONYMOUS_CODING Dhc36C
3L	1690551	3L_1690551_SNP [dm3] 3L_1690551_SNP [dm6]	A	C	3.973e^-4	0.906	INTRON CG7991
3R	19653430	3R_19653430_SNP [dm3] 3R_23827708_SNP [dm6]	A	T	3.979e^-4	0.906	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8070477	2L_8070477_SNP [dm3] 2L_8070477_SNP [dm6]	A	G	3.984e^-4	0.906	INTRON poe
2L	13711178	2L_13711178_SNP [dm3] 2L_13711178_SNP [dm6]	A	G	3.998e^-4	0.906	DOWNSTREAM CG7311 INTRON CG31814
X	18115153	X_18115153_SNP [dm3] X_18221120_SNP [dm6]	C	T	3.999e^-4	0.906	INTRON CG33639	TF binding site mE1_TFBS_chinmo
X	3122374	X_3122374_SNP [dm3] X_3228341_SNP [dm6]	T	C	4.004e^-4	0.906	INTRON dnc
2L	1005836	2L_1005836_SNP [dm3] 2L_1005836_SNP [dm6]	A	T	4.004e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_bab1
X	19768446	X_19768446_SNP [dm3] X_19874413_SNP [dm6]	C	A	4.007e^-4	0.906	INTRON Hers
2R	20222392	2R_20222392_SNP [dm3] 2R_24334869_SNP [dm6]	T	C	4.010e^-4	0.906	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	3510237	2L_3510237_SNP [dm3] 2L_3510237_SNP [dm6]	C	A	4.013e^-4	0.906	UPSTREAM CG31954 DOWNSTREAM CG33123 & 1 other INTERGENIC
X	9680054	X_9680054_SNP [dm3] X_9786021_SNP [dm6]	A	G	4.014e^-4	0.906	INTRON CG32698	TF binding site mE1_TFBS_HSA
2L	7069310	2L_7069310_SNP [dm3] 2L_7069310_SNP [dm6]	G	T	4.017e^-4	0.906	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
2R	6128864	2R_6128864_SNP [dm3] 2R_10241359_SNP [dm6]	T	C	4.018e^-4	0.906	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	604740	2L_604740_SNP [dm3] 2L_604740_SNP [dm6]	A	G	4.032e^-4	0.906	DOWNSTREAM CG13689 INTERGENIC
2L	20054718	2L_20054718_SNP [dm3] 2L_20054718_SNP [dm6]	C	T	4.046e^-4	0.906	SYNONYMOUS_CODING sNPF
X	16766061	X_16766061_SNP [dm3] X_16872028_SNP [dm6]	A	G	4.049e^-4	0.906	INTRON CG13003
2L	7699603	2L_7699603_SNP [dm3] 2L_7699603_SNP [dm6]	G	A	4.065e^-4	0.906	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14581515	3L_14581515_SNP [dm3] 3L_14588415_SNP [dm6]	C	A	4.069e^-4	0.906	INTRON HGTX
3R	21372963	3R_21372963_SNP [dm3] 3R_25547241_SNP [dm6]	G	T	4.080e^-4	0.906	INTRON msi
3R	16325192	3R_16325192_SNP [dm3] 3R_20499470_SNP [dm6]	T	C	4.088e^-4	0.906	DOWNSTREAM Dic2 INTERGENIC
2L	16931490	2L_16931490_INS [dm3] 2L_16931490_INS [dm6]	T	TCTCTCCCATTT...	4.100e^-4	0.906	INTERGENIC
2R	17317605	2R_17317605_SNP [dm3] 2R_21430100_SNP [dm6]	C	A	4.102e^-4	0.906	INTRON Sdc
3L	6770740	3L_6770740_SNP [dm3] 3L_6777640_SNP [dm6]	A	G	4.107e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11022442	X_11022442_SNP [dm3] X_11128409_SNP [dm6]	T	C	4.108e^-4	0.906	SYNONYMOUS_CODING Gtp-bp DOWNSTREAM Klp10A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15834683	2R_15834683_SNP [dm3] 2R_19947178_SNP [dm6]	A	G	4.110e^-4	0.906	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12202230	3L_12202230_SNP [dm3] 3L_12209130_SNP [dm6]	C	T	4.110e^-4	0.906	UTR_3_PRIME app INTRON app
2R	5946028	2R_5946028_SNP [dm3] 2R_10058523_SNP [dm6]	G	A	4.116e^-4	0.906	INTRON magu
2R	8782385	2R_8782385_SNP [dm3] 2R_12894880_SNP [dm6]	T	C	4.125e^-4	0.906	INTRON vg	TF binding site BDTNP1_TFBS_dl
2L	7177607	2L_7177607_SNP [dm3] 2L_7177607_SNP [dm6]	C	A	4.127e^-4	0.906	DOWNSTREAM CR44613 INTERGENIC
2R	20222426	2R_20222426_SNP [dm3] 2R_24334903_SNP [dm6]	C	A	4.127e^-4	0.906	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1059163	2L_1059163_SNP [dm3] 2L_1059163_SNP [dm6]	T	C	4.134e^-4	0.906	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	22737047	3R_22737047_SNP [dm3] 3R_26911325_SNP [dm6]	A	G	4.141e^-4	0.906	SYNONYMOUS_CODING Ets97D DOWNSTREAM T48	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5291053	2R_5291053_SNP [dm3] 2R_9403548_SNP [dm6]	C	T	4.146e^-4	0.906	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10411594	3L_10411594_SNP [dm3] 3L_10418494_SNP [dm6]	A	T	4.151e^-4	0.906	INTERGENIC
2R	18614154	2R_18614154_SNP [dm3] 2R_22726649_SNP [dm6]	A	C	4.151e^-4	0.906	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	17547937	2L_17547937_SNP [dm3] 2L_17547937_SNP [dm6]	G	T	4.157e^-4	0.906	DOWNSTREAM CR45697 INTERGENIC
2L	2588672	2L_2588672_SNP [dm3] 2L_2588672_SNP [dm6]	A	G	4.160e^-4	0.906	INTERGENIC
2L	10503762	2L_10503762_SNP [dm3] 2L_10503762_SNP [dm6]	T	A	4.163e^-4	0.906	INTRON Myo31DF
2L	10709795	2L_10709795_SNP [dm3] 2L_10709795_SNP [dm6]	A	G	4.167e^-4	0.906	UPSTREAM CR44407 & 1 other INTERGENIC
2L	12942020	2L_12942020_SNP [dm3] 2L_12942020_SNP [dm6]	A	G	4.180e^-4	0.906	INTERGENIC
3L	2034119	3L_2034119_SNP [dm3] 3L_2034119_SNP [dm6]	T	A	4.181e^-4	0.906	INTERGENIC
X	11559202	X_11559202_SNP [dm3] X_11665169_SNP [dm6]	A	G	4.187e^-4	0.906	INTRON Ptp10D
3L	12405690	3L_12405690_SNP [dm3] 3L_12412590_SNP [dm6]	G	C	4.191e^-4	0.906	INTRON CG32103
2L	3405144	2L_3405144_SNP [dm3] 2L_3405144_SNP [dm6]	A	G	4.192e^-4	0.906	UTR_3_PRIME pgant2
2L	16931151	2L_16931151_SNP [dm3] 2L_16931151_SNP [dm6]	T	G	4.193e^-4	0.906	INTERGENIC
2R	5892447	2R_5892447_DEL [dm3] 2R_10004942_DEL [dm6]	ACTTTTTA	A	4.197e^-4	0.906	INTRON Pka-R2
3R	11704175	3R_11704175_SNP [dm3] 3R_15878453_SNP [dm6]	T	C	4.200e^-4	0.906	INTERGENIC
2L	11502416	2L_11502416_INS [dm3] 2L_11502416_INS [dm6]	A	AGAA	4.200e^-4	0.906	INTRON spz4	TF binding site mE1_TFBS_inv
2L	7161881	2L_7161881_SNP [dm3] 2L_7161881_SNP [dm6]	C	A	4.206e^-4	0.906	INTERGENIC
3L	24105639	3L_24105639_SNP [dm3] 3L_24112539_SNP [dm6]	T	C	4.210e^-4	0.906	INTRON Snap25
3L	9720205	3L_9720205_SNP [dm3] 3L_9727105_SNP [dm6]	T	C	4.222e^-4	0.906	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1740594	2L_1740594_SNP [dm3] 2L_1740594_SNP [dm6]	G	T	4.224e^-4	0.906	INTRON CG17646
2L	2742875	2L_2742875_SNP [dm3] 2L_2742875_SNP [dm6]	C	T	4.251e^-4	0.906	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3348399	2L_3348399_SNP [dm3] 2L_3348399_SNP [dm6]	T	C	4.255e^-4	0.906	INTRON E23
X	19777577	X_19777577_SNP [dm3] X_19883544_SNP [dm6]	T	C	4.257e^-4	0.906	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7962556	2L_7962556_SNP [dm3] 2L_7962556_SNP [dm6]	A	T	4.257e^-4	0.906	INTRON Snoo
2L	3509731	2L_3509731_SNP [dm3] 2L_3509731_SNP [dm6]	C	T	4.259e^-4	0.906	DOWNSTREAM CR45299 & 2 others INTRON CG31954
2R	7570776	2R_7570776_SNP [dm3] 2R_11683271_SNP [dm6]	A	G	4.268e^-4	0.906	DOWNSTREAM CG13196 INTRON Buffy
2L	1164163	2L_1164163_SNP [dm3] 2L_1164163_SNP [dm6]	T	C	4.269e^-4	0.906	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8999508	2L_8999508_SNP [dm3] 2L_8999508_SNP [dm6]	C	T	4.270e^-4	0.906	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2L	7884832	2L_7884832_SNP [dm3] 2L_7884832_SNP [dm6]	A	G	4.275e^-4	0.906	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13210998	X_13210998_SNP [dm3] X_13316965_SNP [dm6]	G	T	4.277e^-4	0.906	INTRON IP3K2
2R	12020463	2R_12020463_SNP [dm3] 2R_16132958_SNP [dm6]	T	C	4.288e^-4	0.906	SYNONYMOUS_CODING spin INTRON spin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15299162	2R_15299162_SNP [dm3] 2R_19411657_SNP [dm6]	A	C	4.289e^-4	0.906	UPSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16758847	X_16758847_DEL [dm3] X_16864814_DEL [dm6]	TATATCCATCCAT...	T	4.291e^-4	0.906	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	13890738	2L_13890738_SNP [dm3] 2L_13890738_SNP [dm6]	C	T	4.292e^-4	0.906	INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7086295	X_7086295_SNP [dm3] X_7192262_SNP [dm6]	A	T	4.294e^-4	0.906	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	9391783	X_9391783_SNP [dm3] X_9497750_SNP [dm6]	T	A	4.294e^-4	0.906	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3395071	2L_3395071_SNP [dm3] 2L_3395071_SNP [dm6]	A	C	4.294e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17044431	2R_17044431_SNP [dm3] 2R_21156926_SNP [dm6]	T	C	4.297e^-4	0.906	SYNONYMOUS_CODING CG30389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13826492	2L_13826492_SNP [dm3] 2L_13826492_SNP [dm6]	G	C	4.301e^-4	0.906	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18225744	2R_18225744_SNP [dm3] 2R_22338239_SNP [dm6]	T	C	4.304e^-4	0.906	INTRON Liprin-gamma
3L	4106798	3L_4106798_SNP [dm3] 3L_4106798_SNP [dm6]	C	A	4.305e^-4	0.906	UTR_3_PRIME Fit1 DOWNSTREAM CR45670 & 1 other
2R	6139999	2R_6139999_SNP [dm3] 2R_10252494_SNP [dm6]	T	A	4.322e^-4	0.906	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	17548175	2L_17548175_MNP [dm3] 2L_17548175_MNP [dm6]	TAC	CTT	4.327e^-4	0.906	DOWNSTREAM CR45697 INTERGENIC
3L	9482978	3L_9482978_INS [dm3] 3L_9489878_INS [dm6]	A	AAT	4.328e^-4	0.906	UTR_3_PRIME CG32037 UPSTREAM CG32036
2L	19373070	2L_19373070_SNP [dm3] 2L_19373070_SNP [dm6]	C	A	4.330e^-4	0.906	DOWNSTREAM CG17349 INTERGENIC
3L	20670757	3L_20670757_SNP [dm3] 3L_20677657_SNP [dm6]	C	G	4.332e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8373469	2L_8373469_SNP [dm3] 2L_8373469_SNP [dm6]	G	A	4.339e^-4	0.906	UPSTREAM Wdr82 INTRON CG17292	TF binding site mE1_TFBS_HSA
X	12143044	X_12143044_SNP [dm3] X_12249011_SNP [dm6]	A	G	4.343e^-4	0.906	INTRON Ten-a	transposable element FlyBase
X	16766165	X_16766165_DEL [dm3] X_16872132_DEL [dm6]	AA	A	4.344e^-4	0.906	INTRON CG13003
X	12194699	X_12194699_DEL [dm3] X_12300666_DEL [dm6]	AAA	A	4.346e^-4	0.906	INTRON Ten-a
3R	17986708	3R_17986708_SNP [dm3] 3R_22160986_SNP [dm6]	T	G	4.349e^-4	0.906	INTRON SKIP
2L	17289121	2L_17289121_SNP [dm3] 2L_17289121_SNP [dm6]	C	A	4.352e^-4	0.906	INTERGENIC
3R	14523591	3R_14523591_SNP [dm3] 3R_18697869_SNP [dm6]	T	C	4.353e^-4	0.906	INTERGENIC
3L	6787007	3L_6787007_SNP [dm3] 3L_6793907_SNP [dm6]	G	A	4.358e^-4	0.906	UTR_3_PRIME vvl
3L	19645080	3L_19645080_SNP [dm3] 3L_19651980_SNP [dm6]	T	G	4.372e^-4	0.906	INTRON tey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15078001	2L_15078001_SNP [dm3] 2L_15078001_SNP [dm6]	C	A	4.385e^-4	0.906	INTRON CG15270
2R	10947217	2R_10947217_SNP [dm3] 2R_15059712_SNP [dm6]	C	G	4.393e^-4	0.906	INTERGENIC
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	4.394e^-4	0.906	INTRON CG10011
2L	3099133	2L_3099133_SNP [dm3] 2L_3099133_SNP [dm6]	A	G	4.395e^-4	0.906	INTRON toc
2L	7267921	2L_7267921_SNP [dm3] 2L_7267921_SNP [dm6]	T	C	4.397e^-4	0.906	INTRON Wnt4	TF binding site mE1_TFBS_cad
3R	10043846	3R_10043846_SNP [dm3] 3R_14218124_SNP [dm6]	C	T	4.399e^-4	0.906	UPSTREAM CG9649 DOWNSTREAM CG31326 INTERGENIC
3R	16640824	3R_16640824_SNP [dm3] 3R_20815102_SNP [dm6]	A	C	4.409e^-4	0.906	INTRON Fancd2	TF binding site mE1_TFBS_sens
3R	11538486	3R_11538486_SNP [dm3] 3R_15712764_SNP [dm6]	A	T	4.410e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15904769	3L_15904769_SNP [dm3] 3L_15911669_SNP [dm6]	T	A	4.415e^-4	0.906	INTRON sff
3R	13531284	3R_13531284_SNP [dm3] 3R_17705562_SNP [dm6]	A	C	4.415e^-4	0.906	INTRON osa
2R	19179339	2R_19179339_SNP [dm3] 2R_23291816_SNP [dm6]	A	T	4.419e^-4	0.906	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24465792	3R_24465792_SNP [dm3] 3R_28640070_SNP [dm6]	G	A	4.422e^-4	0.906	INTERGENIC
2L	1991554	2L_1991554_SNP [dm3] 2L_1991554_SNP [dm6]	G	A	4.427e^-4	0.906	UTR_3_PRIME Obp22a DOWNSTREAM Obp22a & 1 other
2L	1722287	2L_1722287_SNP [dm3] 2L_1722287_SNP [dm6]	C	A	4.430e^-4	0.906	INTRON Rim2
X	12295860	X_12295860_SNP [dm3] X_12401827_SNP [dm6]	G	C	4.443e^-4	0.906	INTERGENIC
2L	9621080	2L_9621080_SNP [dm3] 2L_9621080_SNP [dm6]	A	G	4.443e^-4	0.906	INTRON GlcAT-S
X	9109740	X_9109740_SNP [dm3] X_9215707_SNP [dm6]	T	C	4.446e^-4	0.906	UPSTREAM CG15368 DOWNSTREAM Obp8a INTERGENIC
2L	14073084	2L_14073084_SNP [dm3] 2L_14073084_SNP [dm6]	C	T	4.459e^-4	0.906	INTRON nAChRalpha5
3L	19645088	3L_19645088_SNP [dm3] 3L_19651988_SNP [dm6]	C	G	4.464e^-4	0.906	INTRON tey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3125484	2L_3125484_SNP [dm3] 2L_3125484_SNP [dm6]	A	C	4.467e^-4	0.906	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3594026	3L_3594026_SNP [dm3] 3L_3594026_SNP [dm6]	A	T	4.472e^-4	0.906	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4682025	2L_4682025_SNP [dm3] 2L_4682025_SNP [dm6]	C	G	4.476e^-4	0.906	UPSTREAM CG11929 INTERGENIC
X	3044517	X_3044517_SNP [dm3] X_3150484_SNP [dm6]	A	T	4.485e^-4	0.906	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20153641	2R_20153641_DEL [dm3] 2R_24266118_DEL [dm6]	ACA	A	4.492e^-4	0.906	DOWNSTREAM CG3376 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8999531	2L_8999531_SNP [dm3] 2L_8999531_SNP [dm6]	A	T	4.493e^-4	0.906	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2L	8999543	2L_8999543_SNP [dm3] 2L_8999543_SNP [dm6]	G	A	4.493e^-4	0.906	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
2L	5773918	2L_5773918_SNP [dm3] 2L_5773918_SNP [dm6]	C	T	4.496e^-4	0.906	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	7261615	X_7261615_MNP [dm3] X_7367582_MNP [dm6]	GATCTTG	ATGTACA	4.500e^-4	0.906	INTRON CG1677 & 1 other
2L	13932095	2L_13932095_SNP [dm3] 2L_13932095_SNP [dm6]	T	C	4.505e^-4	0.906	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3L	10596788	3L_10596788_DEL [dm3] 3L_10603688_DEL [dm6]	ACTGTCAATTTA...	A	4.512e^-4	0.906	INTERGENIC
3L	7033105	3L_7033105_SNP [dm3] 3L_7040005_SNP [dm6]	C	T	4.521e^-4	0.906	INTRON Mp
2L	10054971	2L_10054971_SNP [dm3] 2L_10054971_SNP [dm6]	C	A	4.529e^-4	0.906	NON_SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8672464	2L_8672464_SNP [dm3] 2L_8672464_SNP [dm6]	G	A	4.529e^-4	0.906	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
X	20855412	X_20855412_SNP [dm3] X_20984385_SNP [dm6]	G	C	4.537e^-4	0.906	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	4.553e^-4	0.906	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2R	8785172	2R_8785172_SNP [dm3] 2R_12897667_SNP [dm6]	T	G	4.557e^-4	0.906	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12215942	3L_12215942_SNP [dm3] 3L_12222842_SNP [dm6]	G	C	4.559e^-4	0.906	INTRON app
2R	19317890	2R_19317890_SNP [dm3] 2R_23430367_SNP [dm6]	T	C	4.560e^-4	0.906	INTRON CG9815
2L	15066328	2L_15066328_SNP [dm3] 2L_15066328_SNP [dm6]	G	A	4.562e^-4	0.906	INTRON vas & 1 other
3L	2034108	3L_2034108_SNP [dm3] 3L_2034108_SNP [dm6]	A	C	4.562e^-4	0.906	INTERGENIC
2L	17789507	2L_17789507_SNP [dm3] 2L_17789507_SNP [dm6]	C	T	4.562e^-4	0.906	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	3548677	2L_3548677_SNP [dm3] 2L_3548677_SNP [dm6]	T	A	4.564e^-4	0.906	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14123432	2L_14123432_SNP [dm3] 2L_14123432_SNP [dm6]	G	A	4.565e^-4	0.906	INTERGENIC
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	4.565e^-4	0.906	UTR_3_PRIME CG18480
2R	20033455	2R_20033455_SNP [dm3] 2R_24145932_SNP [dm6]	C	A	4.569e^-4	0.906	UPSTREAM Dat INTRON Dat
3R	7143173	3R_7143173_SNP [dm3] 3R_11317451_SNP [dm6]	C	T	4.578e^-4	0.906	INTERGENIC
3R	19133822	3R_19133822_SNP [dm3] 3R_23308100_SNP [dm6]	C	T	4.595e^-4	0.906	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11605950	3L_11605950_SNP [dm3] 3L_11612850_SNP [dm6]	T	A	4.595e^-4	0.906	NON_SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
2L	13335719	2L_13335719_SNP [dm3] 2L_13335719_SNP [dm6]	G	A	4.608e^-4	0.906	INTERGENIC
3L	11605928	3L_11605928_SNP [dm3] 3L_11612828_SNP [dm6]	C	T	4.613e^-4	0.906	SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
2R	5953195	2R_5953195_SNP [dm3] 2R_10065690_SNP [dm6]	C	T	4.614e^-4	0.906	UPSTREAM mRpL42 INTRON CG2292	TF binding site mE1_TFBS_sens
2R	17153305	2R_17153305_SNP [dm3] 2R_21265800_SNP [dm6]	C	T	4.617e^-4	0.906	NON_SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	10018140	3L_10018140_SNP [dm3] 3L_10025040_SNP [dm6]	T	G	4.618e^-4	0.906	INTRON dpr6
3R	22008467	3R_22008467_SNP [dm3] 3R_26182745_SNP [dm6]	T	G	4.619e^-4	0.906	INTRON CG31323
2L	12160306	2L_12160306_SNP [dm3] 2L_12160306_SNP [dm6]	A	T	4.635e^-4	0.906	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3510357	2L_3510357_SNP [dm3] 2L_3510357_SNP [dm6]	T	C	4.636e^-4	0.906	UTR_3_PRIME CG33123 UPSTREAM CG31954 DOWNSTREAM CR45300 & 1 other
2R	5527723	2R_5527723_SNP [dm3] 2R_9640218_SNP [dm6]	G	A	4.642e^-4	0.906	INTRON Mmp2
3L	10321631	3L_10321631_SNP [dm3] 3L_10328531_SNP [dm6]	A	T	4.642e^-4	0.906	INTERGENIC
3L	2950078	3L_2950078_SNP [dm3] 3L_2950078_SNP [dm6]	T	C	4.644e^-4	0.906	DOWNSTREAM CG32846 INTRON Shab
3L	10579087	3L_10579087_INS [dm3] 3L_10585987_INS [dm6]	A	AA	4.647e^-4	0.906	INTRON A2bp1
3R	25720510	3R_25720510_SNP [dm3] 3R_29894788_SNP [dm6]	G	A	4.658e^-4	0.906	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
2R	5912080	2R_5912080_SNP [dm3] 2R_10024575_SNP [dm6]	C	G	4.660e^-4	0.906	INTRON Pka-R2	TF binding site mE1_TFBS_Trl
2R	10870316	2R_10870316_INS [dm3] 2R_14982811_INS [dm6]	A	ATA	4.662e^-4	0.906	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	5882862	2L_5882862_SNP [dm3] 2L_5882862_SNP [dm6]	T	A	4.663e^-4	0.906	UPSTREAM CG44574 INTERGENIC
2L	2588920	2L_2588920_SNP [dm3] 2L_2588920_SNP [dm6]	T	C	4.669e^-4	0.906	INTERGENIC
3L	10578925	3L_10578925_SNP [dm3] 3L_10585825_SNP [dm6]	G	A	4.672e^-4	0.906	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	7962592	2L_7962592_DEL [dm3] 2L_7962592_DEL [dm6]	CAATGGTGAC	C	4.675e^-4	0.906	INTRON Snoo
2L	8959159	2L_8959159_SNP [dm3] 2L_8959159_SNP [dm6]	A	C	4.682e^-4	0.906	UPSTREAM CG31886 DOWNSTREAM CG9525 INTERGENIC
3L	2034098	3L_2034098_SNP [dm3] 3L_2034098_SNP [dm6]	T	A	4.684e^-4	0.906	INTERGENIC
3L	17333396	3L_17333396_SNP [dm3] 3L_17340296_SNP [dm6]	G	A	4.690e^-4	0.906	SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
2L	7923939	2L_7923939_SNP [dm3] 2L_7923939_SNP [dm6]	G	T	4.690e^-4	0.906	INTRON Snoo
2R	15276021	2R_15276021_INS [dm3] 2R_19388516_INS [dm6]	A	ACAGA	4.693e^-4	0.906	INTRON CG10081
2L	17537129	2L_17537129_SNP [dm3] 2L_17537129_SNP [dm6]	T	A	4.697e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10350330	2R_10350330_SNP [dm3] 2R_14462825_SNP [dm6]	C	T	4.699e^-4	0.906	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15708042	2R_15708042_SNP [dm3] 2R_19820537_SNP [dm6]	C	G	4.724e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	13934113	2L_13934113_SNP [dm3] 2L_13934113_SNP [dm6]	C	T	4.725e^-4	0.907	INTRON Ance-3 & 1 other
3R	14152753	3R_14152753_SNP [dm3] 3R_18327031_SNP [dm6]	A	T	4.734e^-4	0.907	INTRON CG31235
2R	16448277	2R_16448277_SNP [dm3] 2R_20560772_SNP [dm6]	C	A	4.740e^-4	0.907	DOWNSTREAM lms INTRON Mgat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10578866	3L_10578866_SNP [dm3] 3L_10585766_SNP [dm6]	G	A	4.742e^-4	0.907	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	8373470	2L_8373470_SNP [dm3] 2L_8373470_SNP [dm6]	T	A	4.747e^-4	0.907	UPSTREAM Wdr82 INTRON CG17292	TF binding site mE1_TFBS_HSA
3R	21969703	3R_21969703_SNP [dm3] 3R_26143981_SNP [dm6]	T	G	4.755e^-4	0.907	INTERGENIC
3R	25775728	3R_25775728_SNP [dm3] 3R_29950006_SNP [dm6]	T	C	4.761e^-4	0.907	DOWNSTREAM TkR99D INTERGENIC
2L	1740157	2L_1740157_SNP [dm3] 2L_1740157_SNP [dm6]	T	A	4.767e^-4	0.907	INTRON CG17646
2L	14089430	2L_14089430_SNP [dm3] 2L_14089430_SNP [dm6]	G	T	4.768e^-4	0.907	UTR_3_PRIME nAChRalpha5
2L	13812466	2L_13812466_SNP [dm3] 2L_13812466_SNP [dm6]	T	A	4.774e^-4	0.907	UPSTREAM adat DOWNSTREAM CG16888 INTRON CG16865	TF binding site mE1_TFBS_sens
2L	17548761	2L_17548761_SNP [dm3] 2L_17548761_SNP [dm6]	T	C	4.776e^-4	0.907	DOWNSTREAM CR45697 INTERGENIC
X	12654109	X_12654109_SNP [dm3] X_12760076_SNP [dm6]	C	A	4.783e^-4	0.907	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	15280498	3L_15280498_SNP [dm3] 3L_15287398_SNP [dm6]	T	C	4.783e^-4	0.907	INTERGENIC
3R	4360201	3R_4360201_SNP [dm3] 3R_8534479_SNP [dm6]	C	A	4.783e^-4	0.907	INTERGENIC
2R	19371749	2R_19371749_SNP [dm3] 2R_23484226_SNP [dm6]	G	C	4.791e^-4	0.907	INTRON CG43795
3R	17986749	3R_17986749_SNP [dm3] 3R_22161027_SNP [dm6]	C	G	4.791e^-4	0.907	INTRON SKIP
3R	13892133	3R_13892133_SNP [dm3] 3R_18066411_SNP [dm6]	G	A	4.797e^-4	0.907	INTERGENIC
3L	10294069	3L_10294069_SNP [dm3] 3L_10300969_SNP [dm6]	T	A	4.799e^-4	0.907	INTERGENIC
2R	6130853	2R_6130853_SNP [dm3] 2R_10243348_SNP [dm6]	C	T	4.814e^-4	0.907	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2R	18869803	2R_18869803_SNP [dm3] 2R_22982280_SNP [dm6]	C	T	4.816e^-4	0.907	DOWNSTREAM CG32834 INTERGENIC
3L	1475267	3L_1475267_SNP [dm3] 3L_1475267_SNP [dm6]	C	A	4.816e^-4	0.907	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
2R	15196969	2R_15196969_SNP [dm3] 2R_19309464_SNP [dm6]	G	A	4.819e^-4	0.907	SYNONYMOUS_CODING EndoB
2L	4189781	2L_4189781_SNP [dm3] 2L_4189781_SNP [dm6]	A	C	4.822e^-4	0.907	UTR_3_PRIME CG3714 DOWNSTREAM lectin-24Db
X	2717049	X_2717049_SNP [dm3] X_2823016_SNP [dm6]	G	A	4.830e^-4	0.907	INTRON kirre
3R	11455014	3R_11455014_SNP [dm3] 3R_15629292_SNP [dm6]	A	G	4.836e^-4	0.907	INTERGENIC
3R	11455020	3R_11455020_SNP [dm3] 3R_15629298_SNP [dm6]	T	G	4.836e^-4	0.907	INTERGENIC
2L	1575843	2L_1575843_SNP [dm3] 2L_1575843_SNP [dm6]	C	T	4.839e^-4	0.907	INTRON haf

By genomic position
Variant impact
Gene name

mn_Glycerol_LowDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results