DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.144e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2769	0.0703

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1764 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12653734	X_12653734_SNP [dm3] X_12759701_SNP [dm6]	T	A	9.185e^-7	0.487	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
2R	18726393	2R_18726393_SNP [dm3] 2R_22838870_SNP [dm6]	T	C	1.195e^-6	0.487	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11508784	3L_11508784_SNP [dm3] 3L_11515684_SNP [dm6]	C	A	1.364e^-6	0.487	INTRON CG7512
3L	11508520	3L_11508520_SNP [dm3] 3L_11515420_SNP [dm6]	T	C	1.483e^-6	0.487	INTRON CG7512
3L	5231686	3L_5231686_DEL [dm3] 3L_5238586_DEL [dm6]	GCC	G	1.817e^-6	0.487	INTRON shep
3L	5231689	3L_5231689_DEL [dm3] 3L_5238589_DEL [dm6]	GTAAAAATGCGA...	G	1.817e^-6	0.487	INTRON shep
3L	5231716	3L_5231716_SNP [dm3] 3L_5238616_SNP [dm6]	G	T	2.099e^-6	0.487	INTRON shep
3L	5231642	3L_5231642_DEL [dm3] 3L_5238542_DEL [dm6]	TGGCG	T	2.412e^-6	0.487	INTRON shep
3L	5231662	3L_5231662_SNP [dm3] 3L_5238562_SNP [dm6]	T	C	2.412e^-6	0.487	INTRON shep
2R	18726642	2R_18726642_SNP [dm3] 2R_22839119_SNP [dm6]	T	C	2.599e^-6	0.487	SYNONYMOUS_CODING CG9825
2L	14639412	2L_14639412_SNP [dm3] 2L_14639412_SNP [dm6]	G	A	2.987e^-6	0.493	INTRON osp
2R	16931871	2R_16931871_SNP [dm3] 2R_21044366_SNP [dm6]	T	C	3.219e^-6	0.493	INTERGENIC
X	11754215	X_11754215_SNP [dm3] X_11860182_SNP [dm6]	C	T	3.798e^-6	0.493	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5231602	3L_5231602_DEL [dm3] 3L_5238502_DEL [dm6]	GGACTCAATACAATCCTGTA...	G	3.991e^-6	0.493	INTRON shep
3L	5231661	3L_5231661_SNP [dm3] 3L_5238561_SNP [dm6]	C	T	4.019e^-6	0.493	INTRON shep
3L	11509003	3L_11509003_SNP [dm3] 3L_11515903_SNP [dm6]	A	C	4.447e^-6	0.493	INTRON CG7512
3L	5231715	3L_5231715_SNP [dm3] 3L_5238615_SNP [dm6]	A	G	4.694e^-6	0.493	INTRON shep
3L	5231649	3L_5231649_SNP [dm3] 3L_5238549_SNP [dm6]	C	A	4.731e^-6	0.493	INTRON shep
3R	13891963	3R_13891963_SNP [dm3] 3R_18066241_SNP [dm6]	G	A	5.526e^-6	0.545	INTERGENIC
3L	11102990	3L_11102990_SNP [dm3] 3L_11109890_SNP [dm6]	G	A	6.195e^-6	0.551	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11508999	3L_11508999_SNP [dm3] 3L_11515899_SNP [dm6]	C	G	6.321e^-6	0.551	INTRON CG7512
2R	7645025	2R_7645025_SNP [dm3] 2R_11757520_SNP [dm6]	A	T	6.469e^-6	0.551	UTR_5_PRIME ths
3L	5231719	3L_5231719_INS [dm3] 3L_5238619_INS [dm6]	T	TATAATAGATAA...	6.800e^-6	0.554	INTRON shep
2L	1523356	2L_1523356_SNP [dm3] 2L_1523356_SNP [dm6]	C	A	7.504e^-6	0.579	SYNONYMOUS_CODING Or22b
3L	5231732	3L_5231732_DEL [dm3] 3L_5238632_DEL [dm6]	GAG	G	7.729e^-6	0.579	INTRON shep
2R	18726395	2R_18726395_SNP [dm3] 2R_22838872_SNP [dm6]	A	G	8.386e^-6	0.605	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5231825	3L_5231825_SNP [dm3] 3L_5238725_SNP [dm6]	A	C	8.901e^-6	0.618	INTRON shep
3L	5231770	3L_5231770_SNP [dm3] 3L_5238670_SNP [dm6]	T	A	9.446e^-6	0.632	INTRON shep
3R	25795369	3R_25795369_SNP [dm3] 3R_29969647_SNP [dm6]	T	A	9.850e^-6	0.637	UPSTREAM TkR99D INTERGENIC
3L	5231849	3L_5231849_SNP [dm3] 3L_5238749_SNP [dm6]	C	A	1.075e^-5	0.654	INTRON shep
3L	19497550	3L_19497550_SNP [dm3] 3L_19504450_SNP [dm6]	G	A	1.135e^-5	0.654	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3L	2363986	3L_2363986_INS [dm3] 3L_2363986_INS [dm6]	G	GG	1.148e^-5	0.654	INTERGENIC
2L	4227607	2L_4227607_SNP [dm3] 2L_4227607_SNP [dm6]	G	T	1.170e^-5	0.654	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	5231821	3L_5231821_SNP [dm3] 3L_5238721_SNP [dm6]	G	T	1.186e^-5	0.654	INTRON shep
2R	16875344	2R_16875344_SNP [dm3] 2R_20987839_SNP [dm6]	T	C	1.327e^-5	0.663	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11508979	3L_11508979_SNP [dm3] 3L_11515879_SNP [dm6]	G	A	1.338e^-5	0.663	INTRON CG7512
3L	5231718	3L_5231718_SNP [dm3] 3L_5238618_SNP [dm6]	C	A	1.358e^-5	0.663	INTRON shep
2R	16987557	2R_16987557_SNP [dm3] 2R_21100052_SNP [dm6]	G	A	1.367e^-5	0.663	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11102992	3L_11102992_SNP [dm3] 3L_11109892_SNP [dm6]	C	T	1.379e^-5	0.663	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2626348	3L_2626348_SNP [dm3] 3L_2626348_SNP [dm6]	A	T	1.504e^-5	0.705	INTRON Pxn
3L	16326022	3L_16326022_SNP [dm3] 3L_16332922_SNP [dm6]	C	T	1.648e^-5	0.737	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
2L	284303	2L_284303_SNP [dm3] 2L_284303_SNP [dm6]	T	C	1.655e^-5	0.737	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3795336	3L_3795336_SNP [dm3] 3L_3795336_SNP [dm6]	A	G	1.843e^-5	0.737	UPSTREAM CG32264 INTRON CG32264
2R	16985709	2R_16985709_SNP [dm3] 2R_21098204_SNP [dm6]	C	A	1.865e^-5	0.737	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21827449	3R_21827449_SNP [dm3] 3R_26001727_SNP [dm6]	G	A	1.907e^-5	0.737	DOWNSTREAM E_spl_mgamma-HLH INTRON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21833740	3R_21833740_SNP [dm3] 3R_26008018_SNP [dm6]	C	A	1.923e^-5	0.737	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16875177	2R_16875177_SNP [dm3] 2R_20987672_SNP [dm6]	A	G	2.005e^-5	0.737	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7645014	2R_7645014_SNP [dm3] 2R_11757509_SNP [dm6]	C	T	2.028e^-5	0.737	UTR_5_PRIME ths
3L	5231658	3L_5231658_SNP [dm3] 3L_5238558_SNP [dm6]	T	A	2.028e^-5	0.737	INTRON shep
2R	12392100	2R_12392100_SNP [dm3] 2R_16504595_SNP [dm6]	T	C	2.043e^-5	0.737	INTRON Sema-2a
X	6807221	X_6807221_INS [dm3] X_6913188_INS [dm6]	C	CTACCATACACACAC...	2.057e^-5	0.737	INTRON CG14431
2R	5228425	2R_5228425_SNP [dm3] 2R_9340920_SNP [dm6]	A	G	2.085e^-5	0.737	INTRON CG13954 & 1 other
3R	24545175	3R_24545175_SNP [dm3] 3R_28719453_SNP [dm6]	C	T	2.105e^-5	0.737	INTRON htt	TF binding site mE1_TFBS_chinmo
2R	16875166	2R_16875166_SNP [dm3] 2R_20987661_SNP [dm6]	G	A	2.209e^-5	0.737	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5231807	3L_5231807_DEL [dm3] 3L_5238707_DEL [dm6]	TT	T	2.217e^-5	0.737	INTRON shep
2L	11621793	2L_11621793_SNP [dm3] 2L_11621793_SNP [dm6]	T	C	2.231e^-5	0.737	UTR_5_PRIME kek2
3R	21236940	3R_21236940_SNP [dm3] 3R_25411218_SNP [dm6]	C	T	2.258e^-5	0.737	INTRON Fur1
X	19501643	X_19501643_SNP [dm3] X_19607610_SNP [dm6]	A	T	2.312e^-5	0.737	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	3720667	2L_3720667_SNP [dm3] 2L_3720667_SNP [dm6]	T	C	2.321e^-5	0.737	UPSTREAM Shaw INTRON Shaw
3L	11102967	3L_11102967_SNP [dm3] 3L_11109867_SNP [dm6]	T	C	2.463e^-5	0.749	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1838116	2L_1838116_SNP [dm3] 2L_1838116_SNP [dm6]	T	C	2.482e^-5	0.749	INTRON wry
2R	6735376	2R_6735376_SNP [dm3] 2R_10847871_SNP [dm6]	A	G	2.483e^-5	0.749	INTRON CG30015
2L	10208160	2L_10208160_SNP [dm3] 2L_10208160_SNP [dm6]	A	G	2.516e^-5	0.749	SYNONYMOUS_CODING CG5731 UPSTREAM CR44845	TF binding site BDTNP1_TFBS_dl
3R	25795346	3R_25795346_SNP [dm3] 3R_29969624_SNP [dm6]	T	C	2.679e^-5	0.777	UPSTREAM TkR99D INTERGENIC
2R	6735422	2R_6735422_SNP [dm3] 2R_10847917_SNP [dm6]	T	C	2.720e^-5	0.777	INTRON CG30015
3L	12770248	3L_12770248_SNP [dm3] 3L_12777148_SNP [dm6]	G	A	2.748e^-5	0.777	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2R	12577434	2R_12577434_INS [dm3] 2R_16689929_INS [dm6]	C	CC	2.779e^-5	0.777	INTRON CG30463
3L	11102966	3L_11102966_SNP [dm3] 3L_11109866_SNP [dm6]	C	G	2.828e^-5	0.78	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11102687	3L_11102687_SNP [dm3] 3L_11109587_SNP [dm6]	T	C	2.927e^-5	0.79	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13872525	X_13872525_SNP [dm3] X_13978492_SNP [dm6]	T	A	2.966e^-5	0.79	INTRON mamo
3R	21236935	3R_21236935_SNP [dm3] 3R_25411213_SNP [dm6]	T	A	2.991e^-5	0.79	INTRON Fur1
2R	12315660	2R_12315660_SNP [dm3] 2R_16428155_SNP [dm6]	A	T	3.340e^-5	0.866	INTRON Sema-2b
2R	5228436	2R_5228436_SNP [dm3] 2R_9340931_SNP [dm6]	C	T	3.411e^-5	0.866	INTRON CG13954 & 1 other
2L	10208159	2L_10208159_SNP [dm3] 2L_10208159_SNP [dm6]	G	T	3.446e^-5	0.866	SYNONYMOUS_CODING CG5731 UPSTREAM CR44845	TF binding site BDTNP1_TFBS_dl
3L	20929326	3L_20929326_SNP [dm3] 3L_20936226_SNP [dm6]	G	A	3.464e^-5	0.866	INTRON fng
2L	5239391	2L_5239391_SNP [dm3] 2L_5239391_SNP [dm6]	A	T	3.523e^-5	0.869	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	4227613	2L_4227613_SNP [dm3] 2L_4227613_SNP [dm6]	G	A	3.636e^-5	0.872	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	1299839	2R_1299839_SNP [dm3] 2R_5412334_SNP [dm6]	C	A	3.740e^-5	0.872	INTERGENIC	transposable element FlyBase
3L	16424073	3L_16424073_SNP [dm3] 3L_16430973_SNP [dm6]	T	C	3.760e^-5	0.872	INTRON CG33158 & 1 other
3L	16424074	3L_16424074_SNP [dm3] 3L_16430974_SNP [dm6]	C	A	3.760e^-5	0.872	INTRON CG33158 & 1 other
3R	21236936	3R_21236936_SNP [dm3] 3R_25411214_SNP [dm6]	A	G	3.784e^-5	0.872	INTRON Fur1
3L	6699658	3L_6699658_SNP [dm3] 3L_6706558_SNP [dm6]	C	T	3.813e^-5	0.872	INTRON CG8519
3L	11102685	3L_11102685_SNP [dm3] 3L_11109585_SNP [dm6]	A	T	3.956e^-5	0.891	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6557334	X_6557334_SNP [dm3] X_6663301_SNP [dm6]	A	T	3.994e^-5	0.891	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	2855550	3L_2855550_SNP [dm3] 3L_2855550_SNP [dm6]	A	G	4.110e^-5	0.894	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13843155	2R_13843155_SNP [dm3] 2R_17955650_SNP [dm6]	C	T	4.148e^-5	0.894	NON_SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
2L	1523293	2L_1523293_SNP [dm3] 2L_1523293_SNP [dm6]	C	T	4.150e^-5	0.894	SYNONYMOUS_CODING Or22b
3L	11367891	3L_11367891_SNP [dm3] 3L_11374791_SNP [dm6]	T	A	4.437e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	624758	3L_624758_SNP [dm3] 3L_624758_SNP [dm6]	C	T	4.499e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11826647	2L_11826647_SNP [dm3] 2L_11826647_SNP [dm6]	A	G	4.546e^-5	0.907	DOWNSTREAM esc INTRON Pde1c
3R	21236795	3R_21236795_SNP [dm3] 3R_25411073_SNP [dm6]	G	A	4.572e^-5	0.907	INTRON Fur1
3R	6561940	3R_6561940_SNP [dm3] 3R_10736218_SNP [dm6]	T	C	4.609e^-5	0.907	UPSTREAM tomboy20 INTERGENIC
2L	2287718	2L_2287718_SNP [dm3] 2L_2287718_SNP [dm6]	A	T	4.619e^-5	0.907	SYNONYMOUS_CODING CG42658 UPSTREAM CG31681 DOWNSTREAM CG17237
2R	7647473	2R_7647473_SNP [dm3] 2R_11759968_SNP [dm6]	C	A	4.669e^-5	0.907	INTRON ths
2L	14977708	2L_14977708_SNP [dm3] 2L_14977708_SNP [dm6]	A	T	4.691e^-5	0.907	INTRON mol
2R	13339191	2R_13339191_SNP [dm3] 2R_17451686_SNP [dm6]	A	G	4.700e^-5	0.907	UPSTREAM mthl3 INTRON mthl3	transposable element FlyBase
X	19506217	X_19506217_SNP [dm3] X_19612184_SNP [dm6]	G	C	4.704e^-5	0.907	SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5283119	3L_5283119_SNP [dm3] 3L_5290019_SNP [dm6]	C	G	4.743e^-5	0.907	INTERGENIC
3L	16542828	3L_16542828_SNP [dm3] 3L_16549728_SNP [dm6]	C	A	4.807e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3180353	2L_3180353_SNP [dm3] 2L_3180353_SNP [dm6]	G	A	4.911e^-5	0.919	INTRON CG34393
3L	17128792	3L_17128792_SNP [dm3] 3L_17135692_SNP [dm6]	A	T	4.950e^-5	0.919	INTRON Rbp6
2R	16986615	2R_16986615_SNP [dm3] 2R_21099110_SNP [dm6]	G	T	5.084e^-5	0.923	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3R	24540353	3R_24540353_SNP [dm3] 3R_28714631_SNP [dm6]	G	T	5.096e^-5	0.923	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12109935	2R_12109935_SNP [dm3] 2R_16222430_SNP [dm6]	C	T	5.133e^-5	0.923	SYNONYMOUS_CODING CG7798 UPSTREAM mrj DOWNSTREAM CG15706 EXON CR43898	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2802426	3L_2802426_SNP [dm3] 3L_2802426_SNP [dm6]	G	C	5.173e^-5	0.923	INTRON CG43444
2R	18465310	2R_18465310_SNP [dm3] 2R_22577805_SNP [dm6]	C	T	5.273e^-5	0.932	INTRON dnr1
2R	8565678	2R_8565678_SNP [dm3] 2R_12678173_SNP [dm6]	G	T	5.408e^-5	0.94	INTRON CG42708
X	6806853	X_6806853_SNP [dm3] X_6912820_SNP [dm6]	T	C	5.576e^-5	0.94	INTRON CG14431
X	19502657	X_19502657_SNP [dm3] X_19608624_SNP [dm6]	T	C	5.634e^-5	0.94	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5217280	2R_5217280_SNP [dm3] 2R_9329775_SNP [dm6]	T	C	5.693e^-5	0.94	INTRON CG13954 & 1 other
3L	19497670	3L_19497670_SNP [dm3] 3L_19504570_SNP [dm6]	A	C	5.702e^-5	0.94	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
2L	19677326	2L_19677326_SNP [dm3] 2L_19677326_SNP [dm6]	C	T	5.720e^-5	0.94	INTRON Lar	TF binding site mE1_TFBS_inv
2R	7645041	2R_7645041_SNP [dm3] 2R_11757536_SNP [dm6]	G	T	5.733e^-5	0.94	UTR_5_PRIME ths
3L	14722348	3L_14722348_SNP [dm3] 3L_14729248_SNP [dm6]	T	C	5.789e^-5	0.94	SYNONYMOUS_CODING CG13473 INTRON ome
2L	3720617	2L_3720617_SNP [dm3] 2L_3720617_SNP [dm6]	A	T	5.803e^-5	0.94	UPSTREAM Shaw INTRON Shaw
2R	17653532	2R_17653532_SNP [dm3] 2R_21766027_SNP [dm6]	G	A	5.926e^-5	0.94	SYNONYMOUS_CODING CG30395 UPSTREAM CR43984
3L	7056872	3L_7056872_SNP [dm3] 3L_7063772_SNP [dm6]	T	C	6.047e^-5	0.94	INTRON CG8641
X	10667985	X_10667985_SNP [dm3] X_10773952_SNP [dm6]	C	T	6.150e^-5	0.94	INTRON CG15211
2L	637579	2L_637579_SNP [dm3] 2L_637579_SNP [dm6]	G	A	6.183e^-5	0.94	INTERGENIC
X	21495542	X_21495542_INS [dm3] X_21624515_INS [dm6]	G	GACG	6.211e^-5	0.94	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
2L	4227622	2L_4227622_SNP [dm3] 2L_4227622_SNP [dm6]	T	G	6.239e^-5	0.94	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	13641318	2L_13641318_SNP [dm3] 2L_13641318_SNP [dm6]	A	G	6.310e^-5	0.94	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11678060	2L_11678060_SNP [dm3] 2L_11678060_SNP [dm6]	G	A	6.327e^-5	0.94	INTERGENIC
3L	2626346	3L_2626346_SNP [dm3] 3L_2626346_SNP [dm6]	G	A	6.327e^-5	0.94	INTRON Pxn
X	11754174	X_11754174_SNP [dm3] X_11860141_SNP [dm6]	A	G	6.412e^-5	0.94	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22263415	3R_22263415_SNP [dm3] 3R_26437693_SNP [dm6]	A	G	6.494e^-5	0.94	INTERGENIC
X	6806997	X_6806997_SNP [dm3] X_6912964_SNP [dm6]	C	G	6.513e^-5	0.94	INTRON CG14431
2L	815204	2L_815204_SNP [dm3] 2L_815204_SNP [dm6]	C	A	6.596e^-5	0.94	SYNONYMOUS_CODING Saf6 UPSTREAM Pex12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16985751	2R_16985751_SNP [dm3] 2R_21098246_SNP [dm6]	A	G	6.669e^-5	0.94	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1366740	3L_1366740_SNP [dm3] 3L_1366740_SNP [dm6]	A	G	6.797e^-5	0.94	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2364652	3L_2364652_SNP [dm3] 3L_2364652_SNP [dm6]	C	T	6.806e^-5	0.94	INTERGENIC
2R	7644890	2R_7644890_SNP [dm3] 2R_11757385_SNP [dm6]	C	T	6.856e^-5	0.94	UTR_5_PRIME ths
2L	3720935	2L_3720935_SNP [dm3] 2L_3720935_SNP [dm6]	G	A	6.868e^-5	0.94	UPSTREAM Shaw INTRON Shaw
2R	16985685	2R_16985685_SNP [dm3] 2R_21098180_SNP [dm6]	A	G	6.871e^-5	0.94	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19910346	3R_19910346_SNP [dm3] 3R_24084624_SNP [dm6]	A	G	6.976e^-5	0.94	INTRON 4EHP
2L	1523539	2L_1523539_INS [dm3] 2L_1523539_INS [dm6]	T	TCCATTCGCTT...	7.028e^-5	0.94	INTRON Or22b
3L	2648483	3L_2648483_SNP [dm3] 3L_2648483_SNP [dm6]	T	C	7.057e^-5	0.94	UTR_5_PRIME CG1246
3R	21822858	3R_21822858_SNP [dm3] 3R_25997136_SNP [dm6]	T	C	7.141e^-5	0.94	UPSTREAM E_spl_mdelta-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	4297161	X_4297161_SNP [dm3] X_4403128_SNP [dm6]	C	T	7.142e^-5	0.94	INTRON CR32773
3R	26159290	3R_26159290_SNP [dm3] 3R_30333568_SNP [dm6]	T	A	7.146e^-5	0.94	INTRON hdc
X	6806993	X_6806993_SNP [dm3] X_6912960_SNP [dm6]	T	C	7.181e^-5	0.94	INTRON CG14431
2R	7112907	2R_7112907_SNP [dm3] 2R_11225402_SNP [dm6]	A	T	7.181e^-5	0.94	SYNONYMOUS_CODING CG7737	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9413338	2L_9413338_SNP [dm3] 2L_9413338_SNP [dm6]	G	A	7.245e^-5	0.94	INTRON Shawl
3R	21827667	3R_21827667_SNP [dm3] 3R_26001945_SNP [dm6]	T	C	7.288e^-5	0.94	INTRON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14817984	2R_14817984_SNP [dm3] 2R_18930479_SNP [dm6]	T	G	7.321e^-5	0.94	INTRON sano
3L	7056875	3L_7056875_SNP [dm3] 3L_7063775_SNP [dm6]	G	A	7.360e^-5	0.94	INTRON CG8641
X	19501675	X_19501675_SNP [dm3] X_19607642_SNP [dm6]	A	T	7.375e^-5	0.94	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2R	16987601	2R_16987601_SNP [dm3] 2R_21100096_SNP [dm6]	C	T	7.554e^-5	0.947	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25793928	3R_25793928_SNP [dm3] 3R_29968206_SNP [dm6]	G	A	7.567e^-5	0.947	INTRON TkR99D
3L	1366797	3L_1366797_SNP [dm3] 3L_1366797_SNP [dm6]	C	T	7.580e^-5	0.947	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1366760	3L_1366760_SNP [dm3] 3L_1366760_SNP [dm6]	C	A	7.877e^-5	0.97	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16212717	X_16212717_SNP [dm3] X_16318684_SNP [dm6]	C	G	7.885e^-5	0.97	DOWNSTREAM CG13957 INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	11739786	X_11739786_SNP [dm3] X_11845753_SNP [dm6]	C	T	7.914e^-5	0.97	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	12476425	2R_12476425_SNP [dm3] 2R_16588920_SNP [dm6]	G	A	7.971e^-5	0.97	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8157880	2R_8157880_SNP [dm3] 2R_12270375_SNP [dm6]	G	A	8.162e^-5	0.987	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3818033	2L_3818033_SNP [dm3] 2L_3818033_SNP [dm6]	A	G	8.317e^-5	0.992	EXON CR44077	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	624111	3L_624111_SNP [dm3] 3L_624111_SNP [dm6]	T	C	8.461e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2282559	3L_2282559_SNP [dm3] 3L_2282559_SNP [dm6]	C	A	8.515e^-5	0.992	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11102567	3L_11102567_SNP [dm3] 3L_11109467_SNP [dm6]	A	G	8.604e^-5	0.992	SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
3L	6977692	3L_6977692_SNP [dm3] 3L_6984592_SNP [dm6]	A	T	8.607e^-5	0.992	UPSTREAM CG32388 & 1 other INTERGENIC
2L	13012949	2L_13012949_SNP [dm3] 2L_13012949_SNP [dm6]	T	G	8.733e^-5	0.992	UTR_3_PRIME Tor DOWNSTREAM CG9934	TF binding site mE1_TFBS_cad
3L	16806781	3L_16806781_SNP [dm3] 3L_16813681_SNP [dm6]	C	T	8.737e^-5	0.992	INTRON nudC & 1 other
2R	12641682	2R_12641682_INS [dm3] 2R_16754177_INS [dm6]	T	TGTT	8.748e^-5	0.992	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	16486145	2R_16486145_SNP [dm3] 2R_20598640_SNP [dm6]	C	T	8.898e^-5	0.992	SYNONYMOUS_CODING bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16212715	X_16212715_INS [dm3] X_16318682_INS [dm6]	T	TAAGCA	9.152e^-5	0.992	DOWNSTREAM CG13957 INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	10880659	3L_10880659_SNP [dm3] 3L_10887559_SNP [dm6]	C	T	9.340e^-5	0.992	INTERGENIC
X	3607051	X_3607051_SNP [dm3] X_3713018_SNP [dm6]	C	A	9.375e^-5	0.992	INTRON Rala	TF binding site mE1_TFBS_kn
2R	18686957	2R_18686957_SNP [dm3] 2R_22799452_SNP [dm6]	C	A	9.435e^-5	0.992	INTRON blw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14977700	2L_14977700_SNP [dm3] 2L_14977700_SNP [dm6]	T	A	9.650e^-5	0.992	INTRON mol
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	9.781e^-5	0.992	EXON CR44334	TF binding site BDTNP1_TFBS_dl
X	11754200	X_11754200_SNP [dm3] X_11860167_SNP [dm6]	T	C	9.891e^-5	0.992	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3276933	2L_3276933_SNP [dm3] 2L_3276933_SNP [dm6]	C	T	9.894e^-5	0.992	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad
3R	14907223	3R_14907223_SNP [dm3] 3R_19081501_SNP [dm6]	G	T	9.902e^-5	0.992	INTRON cdi
3R	25793859	3R_25793859_SNP [dm3] 3R_29968137_SNP [dm6]	C	A	9.982e^-5	0.992	INTRON TkR99D
2L	15216775	2L_15216775_SNP [dm3] 2L_15216775_SNP [dm6]	A	T	1.006e^-4	0.992	DOWNSTREAM CG43230 INTERGENIC
2R	18726422	2R_18726422_SNP [dm3] 2R_22838899_SNP [dm6]	C	T	1.013e^-4	0.992	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12993241	3L_12993241_SNP [dm3] 3L_13000141_SNP [dm6]	A	T	1.017e^-4	0.992	INTERGENIC
2R	19057428	2R_19057428_SNP [dm3] 2R_23169905_SNP [dm6]	C	T	1.025e^-4	0.992	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22263369	3R_22263369_SNP [dm3] 3R_26437647_SNP [dm6]	T	G	1.025e^-4	0.992	INTERGENIC
3L	11367839	3L_11367839_SNP [dm3] 3L_11374739_SNP [dm6]	C	T	1.026e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	16433591	2L_16433591_SNP [dm3] 2L_16433591_SNP [dm6]	T	A	1.035e^-4	0.992	INTRON CG5888
X	4048257	X_4048257_SNP [dm3] X_4154224_SNP [dm6]	T	C	1.036e^-4	0.992	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15216727	2L_15216727_DEL [dm3] 2L_15216727_DEL [dm6]	TAT	T	1.041e^-4	0.992	DOWNSTREAM CG43230 INTERGENIC
3L	2363846	3L_2363846_SNP [dm3] 3L_2363846_SNP [dm6]	A	T	1.061e^-4	0.992	INTERGENIC
3L	18082443	3L_18082443_SNP [dm3] 3L_18089343_SNP [dm6]	A	C	1.064e^-4	0.992	SYNONYMOUS_CODING CG13698
3L	2373303	3L_2373303_SNP [dm3] 3L_2373303_SNP [dm6]	A	G	1.065e^-4	0.992	SYNONYMOUS_CODING mRpL23 UPSTREAM CG9004 DOWNSTREAM CG8993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
2L	20790060	2L_20790060_SNP [dm3] 2L_20790060_SNP [dm6]	G	T	1.067e^-4	0.992	SPLICE_SITE_REGION vari DOWNSTREAM Pomp INTRON vari	TF binding site mE1_TFBS_sens
X	4870939	X_4870939_SNP [dm3] X_4976906_SNP [dm6]	C	T	1.068e^-4	0.992	INTRON CR44833
3R	6646050	3R_6646050_SNP [dm3] 3R_10820328_SNP [dm6]	C	G	1.068e^-4	0.992	INTERGENIC
X	6569144	X_6569144_SNP [dm3] X_6675111_SNP [dm6]	C	T	1.069e^-4	0.992	SYNONYMOUS_CODING Mcm6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14977694	2L_14977694_SNP [dm3] 2L_14977694_SNP [dm6]	T	A	1.074e^-4	0.992	INTRON mol
2L	14977696	2L_14977696_DEL [dm3] 2L_14977696_DEL [dm6]	TTA	GC	1.074e^-4	0.992	INTRON mol
2L	14977703	2L_14977703_MNP [dm3] 2L_14977703_MNP [dm6]	AAG	GCT	1.074e^-4	0.992	INTRON mol
2L	14977713	2L_14977713_MNP [dm3] 2L_14977713_MNP [dm6]	AAG	TTT	1.074e^-4	0.992	INTRON mol
2L	14977719	2L_14977719_DEL [dm3] 2L_14977719_DEL [dm6]	ACCAAA	G	1.074e^-4	0.992	INTRON mol
2L	14977751	2L_14977751_SNP [dm3] 2L_14977751_SNP [dm6]	A	G	1.074e^-4	0.992	INTRON mol
2R	18738718	2R_18738718_SNP [dm3] 2R_22851195_SNP [dm6]	C	A	1.076e^-4	0.992	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
3R	19775396	3R_19775396_SNP [dm3] 3R_23949674_SNP [dm6]	C	G	1.086e^-4	0.992	INTERGENIC
3R	21236740	3R_21236740_SNP [dm3] 3R_25411018_SNP [dm6]	C	A	1.092e^-4	0.992	INTRON Fur1
2L	13641515	2L_13641515_SNP [dm3] 2L_13641515_SNP [dm6]	T	C	1.093e^-4	0.992	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl
3L	576347	3L_576347_SNP [dm3] 3L_576347_SNP [dm6]	T	G	1.096e^-4	0.992	UTR_3_PRIME hipk DOWNSTREAM hipk
3R	14448263	3R_14448263_SNP [dm3] 3R_18622541_SNP [dm6]	G	T	1.108e^-4	0.992	INTRON qin	TF binding site mE1_TFBS_inv
3L	2855494	3L_2855494_SNP [dm3] 3L_2855494_SNP [dm6]	C	G	1.110e^-4	0.992	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19501079	X_19501079_SNP [dm3] X_19607046_SNP [dm6]	A	G	1.113e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	4873505	2R_4873505_SNP [dm3] 2R_8986000_SNP [dm6]	G	A	1.114e^-4	0.992	UPSTREAM CG8213 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22076706	X_22076706_SNP [dm3] X_22674870_SNP [dm6]	G	A	1.120e^-4	0.992	INTRON CR44997
2R	18079402	2R_18079402_SNP [dm3] 2R_22191897_SNP [dm6]	C	G	1.131e^-4	0.992	INTRON Swim	TF binding site mE1_TFBS_cad
3L	3052138	3L_3052138_SNP [dm3] 3L_3052138_SNP [dm6]	A	T	1.134e^-4	0.992	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19910299	3R_19910299_SNP [dm3] 3R_24084577_SNP [dm6]	T	C	1.139e^-4	0.992	INTRON 4EHP
2R	11509253	2R_11509253_SNP [dm3] 2R_15621748_SNP [dm6]	G	T	1.147e^-4	0.992	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19500612	X_19500612_SNP [dm3] X_19606579_SNP [dm6]	T	C	1.152e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	624263	3L_624263_DEL [dm3] 3L_624263_DEL [dm6]	TCAGCTCATGCTCA...	C	1.157e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624280	3L_624280_MNP [dm3] 3L_624280_MNP [dm6]	GCA	ATC	1.157e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624287	3L_624287_SNP [dm3] 3L_624287_SNP [dm6]	A	G	1.157e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624288	3L_624288_SNP [dm3] 3L_624288_SNP [dm6]	G	A	1.157e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6777724	X_6777724_INS [dm3] X_6883691_INS [dm6]	C	CC	1.162e^-4	0.992	INTERGENIC
2L	307423	2L_307423_SNP [dm3] 2L_307423_SNP [dm6]	A	G	1.164e^-4	0.992	INTRON Plc21C	TF binding site mE1_TFBS_Trl
X	3732408	X_3732408_SNP [dm3] X_3838375_SNP [dm6]	A	C	1.170e^-4	0.992	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5145321	3L_5145321_SNP [dm3] 3L_5152221_SNP [dm6]	C	T	1.171e^-4	0.992	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10769605	3L_10769605_SNP [dm3] 3L_10776505_SNP [dm6]	T	G	1.190e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10713162	2R_10713162_SNP [dm3] 2R_14825657_SNP [dm6]	C	T	1.196e^-4	0.992	INTERGENIC
2R	10713167	2R_10713167_SNP [dm3] 2R_14825662_SNP [dm6]	C	T	1.196e^-4	0.992	INTERGENIC
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	1.204e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	8138927	3R_8138927_SNP [dm3] 3R_12313205_SNP [dm6]	T	G	1.213e^-4	0.992	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10632868	3L_10632868_SNP [dm3] 3L_10639768_SNP [dm6]	C	T	1.215e^-4	0.992	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
2R	4199254	2R_4199254_SNP [dm3] 2R_8311749_SNP [dm6]	G	C	1.218e^-4	0.992	UPSTREAM CR44449 EXON CR44450
2R	5340591	2R_5340591_SNP [dm3] 2R_9453086_SNP [dm6]	G	A	1.246e^-4	0.992	DOWNSTREAM CG33758 INTRON Camta
X	19501673	X_19501673_SNP [dm3] X_19607640_SNP [dm6]	A	G	1.260e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	11367881	3L_11367881_SNP [dm3] 3L_11374781_SNP [dm6]	A	G	1.261e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	4468574	2R_4468574_SNP [dm3] 2R_8581069_SNP [dm6]	C	T	1.262e^-4	0.992	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	16325944	3L_16325944_SNP [dm3] 3L_16332844_SNP [dm6]	C	T	1.264e^-4	0.992	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
2L	5899092	2L_5899092_SNP [dm3] 2L_5899092_SNP [dm6]	T	C	1.266e^-4	0.992	DOWNSTREAM CR44579 INTERGENIC
3L	5509970	3L_5509970_SNP [dm3] 3L_5516870_SNP [dm6]	G	A	1.269e^-4	0.992	INTRON Lkr
3L	11102668	3L_11102668_SNP [dm3] 3L_11109568_SNP [dm6]	A	G	1.275e^-4	0.992	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21821567	3R_21821567_SNP [dm3] 3R_25995845_SNP [dm6]	G	A	1.279e^-4	0.992	DOWNSTREAM CG43116 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	14164336	2R_14164336_SNP [dm3] 2R_18276831_SNP [dm6]	C	T	1.288e^-4	0.992	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18082455	3L_18082455_SNP [dm3] 3L_18089355_SNP [dm6]	A	G	1.289e^-4	0.992	SYNONYMOUS_CODING CG13698
X	14518555	X_14518555_INS [dm3] X_14624522_INS [dm6]	G	GTGGGT	1.296e^-4	0.992	INTRON NetA
2R	19774734	2R_19774734_SNP [dm3] 2R_23887211_SNP [dm6]	G	A	1.299e^-4	0.992	INTRON CG5597
3L	5218402	3L_5218402_SNP [dm3] 3L_5225302_SNP [dm6]	G	T	1.301e^-4	0.992	INTRON shep
3L	16325936	3L_16325936_SNP [dm3] 3L_16332836_SNP [dm6]	C	A	1.305e^-4	0.992	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
2L	815180	2L_815180_SNP [dm3] 2L_815180_SNP [dm6]	T	G	1.306e^-4	0.992	SYNONYMOUS_CODING Saf6 UPSTREAM Pex12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9649884	2R_9649884_SNP [dm3] 2R_13762379_SNP [dm6]	G	C	1.309e^-4	0.992	INTERGENIC
3L	11508941	3L_11508941_SNP [dm3] 3L_11515841_SNP [dm6]	G	A	1.319e^-4	0.992	INTRON CG7512
2R	6735446	2R_6735446_SNP [dm3] 2R_10847941_SNP [dm6]	G	A	1.331e^-4	0.992	INTRON CG30015
2L	1856218	2L_1856218_SNP [dm3] 2L_1856218_SNP [dm6]	A	G	1.337e^-4	0.992	INTRON wry
3R	5220691	3R_5220691_SNP [dm3] 3R_9394969_SNP [dm6]	T	A	1.337e^-4	0.992	UPSTREAM FER INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	4565701	X_4565701_SNP [dm3] X_4671668_SNP [dm6]	C	T	1.353e^-4	0.992	INTRON rap
3L	6848053	3L_6848053_SNP [dm3] 3L_6854953_SNP [dm6]	G	A	1.356e^-4	0.992	INTERGENIC
2L	18692840	2L_18692840_SNP [dm3] 2L_18692840_SNP [dm6]	T	C	1.362e^-4	0.992	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15564271	3R_15564271_SNP [dm3] 3R_19738549_SNP [dm6]	A	T	1.389e^-4	0.992	INTRON GluClalpha
2L	18694502	2L_18694502_SNP [dm3] 2L_18694502_SNP [dm6]	A	G	1.394e^-4	0.992	INTRON CG10383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_ttk
3R	21236781	3R_21236781_SNP [dm3] 3R_25411059_SNP [dm6]	T	G	1.399e^-4	0.992	INTRON Fur1
2L	5674043	2L_5674043_SNP [dm3] 2L_5674043_SNP [dm6]	G	T	1.425e^-4	0.992	INTERGENIC
3L	9561429	3L_9561429_SNP [dm3] 3L_9568329_SNP [dm6]	C	T	1.430e^-4	0.992	INTRON CG42673
2R	14817950	2R_14817950_SNP [dm3] 2R_18930445_SNP [dm6]	G	C	1.432e^-4	0.992	INTRON sano
X	6506818	X_6506818_INS [dm3] X_6612785_INS [dm6]	G	GCTATAGGGCTATAGGA...	1.433e^-4	0.992	INTRON pigs	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5449780	X_5449780_SNP [dm3] X_5555747_SNP [dm6]	A	T	1.438e^-4	0.992	INTRON Vsx2	TF binding site mE1_TFBS_Kr
3R	21815750	3R_21815750_SNP [dm3] 3R_25990028_SNP [dm6]	G	A	1.440e^-4	0.992	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2L	13641000	2L_13641000_INS [dm3] 2L_13641000_INS [dm6]	T	TT	1.445e^-4	0.992	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4165573	2L_4165573_INS [dm3] 2L_4165573_INS [dm6]	C	CTCACCAAG	1.451e^-4	0.992	INTRON Or24a
2R	16488067	2R_16488067_SNP [dm3] 2R_20600562_SNP [dm6]	T	C	1.457e^-4	0.992	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2990174	X_2990174_SNP [dm3] X_3096141_SNP [dm6]	T	A	1.472e^-4	0.992	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3720596	2L_3720596_SNP [dm3] 2L_3720596_SNP [dm6]	A	G	1.477e^-4	0.992	UPSTREAM Shaw INTRON Shaw
2R	6672439	2R_6672439_INS [dm3] 2R_10784934_INS [dm6]	A	AACATTCG	1.480e^-4	0.992	DOWNSTREAM CR44300 INTRON CG33144 EXON CR44299
3L	4485062	3L_4485062_SNP [dm3] 3L_4485062_SNP [dm6]	A	G	1.493e^-4	0.992	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	624473	3L_624473_SNP [dm3] 3L_624473_SNP [dm6]	A	T	1.495e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7056869	3L_7056869_SNP [dm3] 3L_7063769_SNP [dm6]	T	C	1.497e^-4	0.992	INTRON CG8641
2R	11509682	2R_11509682_SNP [dm3] 2R_15622177_SNP [dm6]	G	A	1.499e^-4	0.992	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6054265	3R_6054265_SNP [dm3] 3R_10228543_SNP [dm6]	G	C	1.518e^-4	0.992	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19500451	X_19500451_INS [dm3] X_19606418_INS [dm6]	A	ACATA	1.519e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	332219	2L_332219_SNP [dm3] 2L_332219_SNP [dm6]	A	T	1.520e^-4	0.992	UTR_5_PRIME CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
2L	946868	2L_946868_SNP [dm3] 2L_946868_SNP [dm6]	G	C	1.526e^-4	0.992	INTRON CG4341
X	6807227	X_6807227_SNP [dm3] X_6913194_SNP [dm6]	A	G	1.535e^-4	0.992	INTRON CG14431
X	3880718	X_3880718_SNP [dm3] X_3986685_SNP [dm6]	T	C	1.545e^-4	0.992	INTERGENIC
2R	12476419	2R_12476419_SNP [dm3] 2R_16588914_SNP [dm6]	G	A	1.549e^-4	0.992	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12315791	2R_12315791_SNP [dm3] 2R_16428286_SNP [dm6]	A	T	1.553e^-4	0.992	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
X	13697515	X_13697515_SNP [dm3] X_13803482_SNP [dm6]	C	T	1.555e^-4	0.992	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
2R	16986567	2R_16986567_SNP [dm3] 2R_21099062_SNP [dm6]	C	T	1.559e^-4	0.992	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2R	12641671	2R_12641671_SNP [dm3] 2R_16754166_SNP [dm6]	T	A	1.567e^-4	0.992	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	6735439	2R_6735439_SNP [dm3] 2R_10847934_SNP [dm6]	T	G	1.577e^-4	0.992	INTRON CG30015
2R	16664945	2R_16664945_SNP [dm3] 2R_20777440_SNP [dm6]	T	G	1.590e^-4	0.992	NON_SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2R	15434782	2R_15434782_SNP [dm3] 2R_19547277_SNP [dm6]	C	A	1.607e^-4	0.992	UPSTREAM sm INTRON sm
2R	12196986	2R_12196986_SNP [dm3] 2R_16309481_SNP [dm6]	C	T	1.608e^-4	0.992	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7645039	2R_7645039_SNP [dm3] 2R_11757534_SNP [dm6]	A	C	1.612e^-4	0.992	UTR_5_PRIME ths
2L	10215683	2L_10215683_SNP [dm3] 2L_10215683_SNP [dm6]	G	T	1.613e^-4	0.992	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	20632561	2R_20632561_SNP [dm3] 2R_24745038_SNP [dm6]	G	A	1.614e^-4	0.992	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	8920559	X_8920559_SNP [dm3] X_9026526_SNP [dm6]	T	C	1.619e^-4	0.992	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2R	6735353	2R_6735353_SNP [dm3] 2R_10847848_SNP [dm6]	G	A	1.620e^-4	0.992	INTRON CG30015
3L	632600	3L_632600_DEL [dm3] 3L_632600_DEL [dm6]	TGTATAT	T	1.623e^-4	0.992	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	332223	2L_332223_SNP [dm3] 2L_332223_SNP [dm6]	C	T	1.639e^-4	0.992	UTR_5_PRIME CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
3R	21815618	3R_21815618_SNP [dm3] 3R_25989896_SNP [dm6]	A	T	1.646e^-4	0.992	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	6777719	X_6777719_SNP [dm3] X_6883686_SNP [dm6]	C	T	1.646e^-4	0.992	INTERGENIC
X	15173297	X_15173297_SNP [dm3] X_15279264_SNP [dm6]	G	T	1.652e^-4	0.992	INTERGENIC
2R	10755338	2R_10755338_SNP [dm3] 2R_14867833_SNP [dm6]	T	C	1.655e^-4	0.992	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12852441	3L_12852441_SNP [dm3] 3L_12859341_SNP [dm6]	C	T	1.672e^-4	0.992	NON_SYNONYMOUS_CODING CG32107
3L	9325068	3L_9325068_SNP [dm3] 3L_9331968_SNP [dm6]	C	A	1.681e^-4	0.992	INTERGENIC
3R	25771340	3R_25771340_SNP [dm3] 3R_29945618_SNP [dm6]	A	G	1.689e^-4	0.992	SYNONYMOUS_CODING CG15523
X	19502399	X_19502399_SNP [dm3] X_19608366_SNP [dm6]	T	C	1.691e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	16822262	3L_16822262_SNP [dm3] 3L_16829162_SNP [dm6]	C	T	1.696e^-4	0.992	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1523545	2L_1523545_SNP [dm3] 2L_1523545_SNP [dm6]	G	C	1.701e^-4	0.992	INTRON Or22b
2R	7565778	2R_7565778_SNP [dm3] 2R_11678273_SNP [dm6]	G	A	1.702e^-4	0.992	SYNONYMOUS_CODING Roc2 DOWNSTREAM Tret1-2
2R	18722187	2R_18722187_SNP [dm3] 2R_22834664_SNP [dm6]	A	G	1.716e^-4	0.992	UTR_5_PRIME CG12490 DOWNSTREAM CG30265
3L	3889289	3L_3889289_SNP [dm3] 3L_3889289_SNP [dm6]	T	C	1.738e^-4	0.992	INTERGENIC
3L	4636097	3L_4636097_SNP [dm3] 3L_4636097_SNP [dm6]	G	A	1.750e^-4	0.992	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
X	15358611	X_15358611_SNP [dm3] X_15464578_SNP [dm6]	A	C	1.752e^-4	0.992	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3R	22263422	3R_22263422_SNP [dm3] 3R_26437700_SNP [dm6]	C	A	1.758e^-4	0.992	INTERGENIC
3L	9016928	3L_9016928_SNP [dm3] 3L_9023828_SNP [dm6]	T	A	1.770e^-4	0.992	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	10713168	2R_10713168_SNP [dm3] 2R_14825663_SNP [dm6]	A	C	1.771e^-4	0.992	INTERGENIC
3R	7133876	3R_7133876_SNP [dm3] 3R_11308154_SNP [dm6]	T	A	1.773e^-4	0.992	INTERGENIC
3L	3533990	3L_3533990_SNP [dm3] 3L_3533990_SNP [dm6]	T	A	1.795e^-4	0.992	INTRON Eip63E
3L	20136633	3L_20136633_SNP [dm3] 3L_20143533_SNP [dm6]	G	A	1.805e^-4	0.992	INTERGENIC
2L	5440538	2L_5440538_SNP [dm3] 2L_5440538_SNP [dm6]	A	T	1.807e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10436650	2R_10436650_SNP [dm3] 2R_14549145_SNP [dm6]	C	T	1.817e^-4	0.992	INTRON ttv
2L	332105	2L_332105_SNP [dm3] 2L_332105_SNP [dm6]	G	A	1.830e^-4	0.992	NON_SYNONYMOUS_CODING CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
2L	8878919	2L_8878919_SNP [dm3] 2L_8878919_SNP [dm6]	G	A	1.838e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1327577	2R_1327577_SNP [dm3] 2R_5440072_SNP [dm6]	C	T	1.851e^-4	0.992	INTRON laccase2
3L	20660094	3L_20660094_SNP [dm3] 3L_20666994_SNP [dm6]	G	A	1.854e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9577121	2L_9577121_SNP [dm3] 2L_9577121_SNP [dm6]	T	A	1.854e^-4	0.992	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18983830	2R_18983830_DEL [dm3] 2R_23096307_DEL [dm6]	GGT	G	1.874e^-4	0.992	INTERGENIC
3L	13258620	3L_13258620_SNP [dm3] 3L_13265520_SNP [dm6]	C	T	1.890e^-4	0.992	INTRON caps
2R	13099822	2R_13099822_SNP [dm3] 2R_17212317_SNP [dm6]	C	T	1.892e^-4	0.992	INTERGENIC
2L	12377486	2L_12377486_DEL [dm3] 2L_12377486_DEL [dm6]	AACCAAA	A	1.896e^-4	0.992	INTRON bru-2
2R	18725858	2R_18725858_SNP [dm3] 2R_22838335_SNP [dm6]	C	A	1.913e^-4	0.992	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14059419	3R_14059419_SNP [dm3] 3R_18233697_SNP [dm6]	T	A	1.921e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
3R	3138231	3R_3138231_SNP [dm3] 3R_7312509_SNP [dm6]	T	C	1.924e^-4	0.992	EXON CR44334
2L	12780291	2L_12780291_SNP [dm3] 2L_12780291_SNP [dm6]	C	T	1.928e^-4	0.992	INTERGENIC
X	11354962	X_11354962_SNP [dm3] X_11460929_SNP [dm6]	A	G	1.931e^-4	0.992	INTRON CG43155
3R	6562159	3R_6562159_SNP [dm3] 3R_10736437_SNP [dm6]	G	T	1.938e^-4	0.992	UPSTREAM tomboy20 INTERGENIC
2R	18682200	2R_18682200_SNP [dm3] 2R_22794695_SNP [dm6]	G	C	1.954e^-4	0.992	INTRON CG42260
X	6254566	X_6254566_INS [dm3] X_6360533_INS [dm6]	T	TCGGAT	1.956e^-4	0.992	UTR_3_PRIME kdn DOWNSTREAM swaPsi
3L	11367883	3L_11367883_SNP [dm3] 3L_11374783_SNP [dm6]	A	C	1.978e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9016937	3L_9016937_SNP [dm3] 3L_9023837_SNP [dm6]	G	C	1.985e^-4	0.992	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	6506792	X_6506792_DEL [dm3] X_6612759_DEL [dm6]	GATGGTTTCGAG...	G	1.987e^-4	0.992	INTRON pigs	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16363105	2R_16363105_DEL [dm3] 2R_20475600_DEL [dm6]	AGTACTATGCAATCAAATT...	A	2.008e^-4	0.992	INTRON CG12484
X	6557335	X_6557335_SNP [dm3] X_6663302_SNP [dm6]	A	G	2.014e^-4	0.992	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	10769606	3L_10769606_SNP [dm3] 3L_10776506_SNP [dm6]	A	T	2.014e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Trl
X	11354963	X_11354963_SNP [dm3] X_11460930_SNP [dm6]	A	C	2.015e^-4	0.992	INTRON CG43155
2R	6454233	2R_6454233_SNP [dm3] 2R_10566728_SNP [dm6]	C	T	2.015e^-4	0.992	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12993252	3L_12993252_INS [dm3] 3L_13000152_INS [dm6]	A	AC	2.018e^-4	0.992	INTERGENIC
3R	6461324	3R_6461324_SNP [dm3] 3R_10635602_SNP [dm6]	A	T	2.020e^-4	0.992	INTRON hth
2R	9057007	2R_9057007_SNP [dm3] 2R_13169502_SNP [dm6]	T	C	2.021e^-4	0.992	SPLICE_SITE_REGION Spt-I INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	10574083	3L_10574083_SNP [dm3] 3L_10580983_SNP [dm6]	T	C	2.027e^-4	0.992	INTRON A2bp1
3R	4905095	3R_4905095_SNP [dm3] 3R_9079373_SNP [dm6]	C	A	2.032e^-4	0.992	INTRON pum
2L	5441051	2L_5441051_SNP [dm3] 2L_5441051_SNP [dm6]	A	G	2.039e^-4	0.992	INTERGENIC
3R	21833430	3R_21833430_SNP [dm3] 3R_26007708_SNP [dm6]	C	A	2.042e^-4	0.992	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21498480	X_21498480_INS [dm3] X_21627453_INS [dm6]	G	GATAG	2.045e^-4	0.992	INTRON DIP1	transposable element FlyBase
3R	15402746	3R_15402746_SNP [dm3] 3R_19577024_SNP [dm6]	A	G	2.047e^-4	0.992	INTRON Dys
2L	1937028	2L_1937028_SNP [dm3] 2L_1937028_SNP [dm6]	G	T	2.048e^-4	0.992	INTRON CG7337	TF binding site mE1_TFBS_cad
3L	20135280	3L_20135280_SNP [dm3] 3L_20142180_SNP [dm6]	G	A	2.059e^-4	0.992	INTERGENIC
3R	6306022	3R_6306022_SNP [dm3] 3R_10480300_SNP [dm6]	A	T	2.062e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19643591	2R_19643591_SNP [dm3] 2R_23756068_SNP [dm6]	T	G	2.063e^-4	0.992	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	9056996	2R_9056996_SNP [dm3] 2R_13169491_SNP [dm6]	T	G	2.064e^-4	0.992	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
X	2370982	X_2370982_SNP [dm3] X_2476949_SNP [dm6]	G	T	2.066e^-4	0.992	UTR_3_PRIME trol INTRON trol	TF binding site mE1_TFBS_HSA
3L	3052159	3L_3052159_SNP [dm3] 3L_3052159_SNP [dm6]	A	G	2.070e^-4	0.992	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9313703	3L_9313703_SNP [dm3] 3L_9320603_SNP [dm6]	C	A	2.078e^-4	0.992	INTERGENIC
3R	2798230	3R_2798230_SNP [dm3] 3R_6972508_SNP [dm6]	T	A	2.089e^-4	0.992	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13698727	2R_13698727_SNP [dm3] 2R_17811222_SNP [dm6]	G	A	2.089e^-4	0.992	INTRON grh	TF binding site mE1_TFBS_chinmo
X	21497897	X_21497897_SNP [dm3] X_21626870_SNP [dm6]	A	G	2.096e^-4	0.992	SYNONYMOUS_CODING DIP1
X	20321082	X_20321082_SNP [dm3] X_20450055_SNP [dm6]	G	C	2.103e^-4	0.992	INTRON CG32506
3R	5208981	3R_5208981_SNP [dm3] 3R_9383259_SNP [dm6]	A	G	2.109e^-4	0.992	INTRON FER
2R	14188440	2R_14188440_SNP [dm3] 2R_18300935_SNP [dm6]	A	T	2.110e^-4	0.992	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	10406022	X_10406022_SNP [dm3] X_10511989_SNP [dm6]	G	A	2.117e^-4	0.992	INTRON spri
3L	16808722	3L_16808722_SNP [dm3] 3L_16815622_SNP [dm6]	G	A	2.118e^-4	0.992	INTRON nudC & 1 other
3R	7087674	3R_7087674_SNP [dm3] 3R_11261952_SNP [dm6]	C	G	2.121e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24492285	3R_24492285_SNP [dm3] 3R_28666563_SNP [dm6]	A	G	2.122e^-4	0.992	INTERGENIC
2R	1347816	2R_1347816_SNP [dm3] 2R_5460311_SNP [dm6]	C	A	2.124e^-4	0.992	INTERGENIC	transposable element FlyBase
3R	14699122	3R_14699122_SNP [dm3] 3R_18873400_SNP [dm6]	A	C	2.127e^-4	0.992	INTERGENIC
2L	800973	2L_800973_DEL [dm3] 2L_800973_DEL [dm6]	TT	G	2.132e^-4	0.992	DOWNSTREAM CR45259 INTERGENIC
2L	9594859	2L_9594859_INS [dm3] 2L_9594859_INS [dm6]	C	CAACC	2.144e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
3L	11090041	3L_11090041_SNP [dm3] 3L_11096941_SNP [dm6]	C	T	2.149e^-4	0.992	UPSTREAM pncr011:3L & 1 other DOWNSTREAM CG6272 EXON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	18692846	2L_18692846_SNP [dm3] 2L_18692846_SNP [dm6]	G	A	2.150e^-4	0.992	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11889083	3R_11889083_SNP [dm3] 3R_16063361_SNP [dm6]	T	C	2.164e^-4	0.992	INTRON CG10185	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5217227	2R_5217227_SNP [dm3] 2R_9329722_SNP [dm6]	C	T	2.168e^-4	0.992	INTRON CG13954 & 1 other
X	15542309	X_15542309_SNP [dm3] X_15648276_SNP [dm6]	A	T	2.177e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5145345	3L_5145345_SNP [dm3] 3L_5152245_SNP [dm6]	A	T	2.184e^-4	0.992	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6755582	3L_6755582_SNP [dm3] 3L_6762482_SNP [dm6]	G	C	2.195e^-4	0.992	INTRON CG32392
2L	9596874	2L_9596874_SNP [dm3] 2L_9596874_SNP [dm6]	A	T	2.213e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	23770573	3R_23770573_SNP [dm3] 3R_27944851_SNP [dm6]	A	G	2.221e^-4	0.992	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6453009	2R_6453009_DEL [dm3] 2R_10565504_DEL [dm6]	TT	T	2.227e^-4	0.992	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
2R	8565666	2R_8565666_SNP [dm3] 2R_12678161_SNP [dm6]	A	T	2.232e^-4	0.992	INTRON CG42708
3R	3138252	3R_3138252_SNP [dm3] 3R_7312530_SNP [dm6]	T	A	2.236e^-4	0.992	EXON CR44334
3R	5317749	3R_5317749_SNP [dm3] 3R_9492027_SNP [dm6]	A	T	2.247e^-4	0.992	INTRON CG16779
3R	13321326	3R_13321326_SNP [dm3] 3R_17495604_SNP [dm6]	G	T	2.273e^-4	0.992	INTRON Dscam3
3R	21821552	3R_21821552_SNP [dm3] 3R_25995830_SNP [dm6]	G	A	2.277e^-4	0.992	DOWNSTREAM CG43116 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	14453937	3R_14453937_SNP [dm3] 3R_18628215_SNP [dm6]	G	A	2.279e^-4	0.992	DOWNSTREAM tRNA:CR31228 & 1 other INTRON qin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15436890	2L_15436890_SNP [dm3] 2L_15436890_SNP [dm6]	C	T	2.284e^-4	0.992	DOWNSTREAM CR44861 INTERGENIC
2L	8884711	2L_8884711_SNP [dm3] 2L_8884711_SNP [dm6]	A	G	2.286e^-4	0.992	INTERGENIC
2L	18692813	2L_18692813_SNP [dm3] 2L_18692813_SNP [dm6]	A	G	2.288e^-4	0.992	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11909287	3R_11909287_SNP [dm3] 3R_16083565_SNP [dm6]	G	A	2.299e^-4	0.992	UPSTREAM sxe2 & 1 other INTRON Mhcl
2R	12476941	2R_12476941_SNP [dm3] 2R_16589436_SNP [dm6]	T	A	2.302e^-4	0.992	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6565889	3R_6565889_SNP [dm3] 3R_10740167_SNP [dm6]	A	G	2.314e^-4	0.992	INTRON TkR86C
3L	3797482	3L_3797482_SNP [dm3] 3L_3797482_SNP [dm6]	C	T	2.322e^-4	0.992	INTRON CG32264
2R	11527747	2R_11527747_SNP [dm3] 2R_15640242_SNP [dm6]	G	A	2.333e^-4	0.992	INTRON CG42524
3L	624047	3L_624047_SNP [dm3] 3L_624047_SNP [dm6]	G	T	2.335e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14438652	2R_14438652_SNP [dm3] 2R_18551147_SNP [dm6]	G	T	2.336e^-4	0.992	INTERGENIC
3R	13866342	3R_13866342_SNP [dm3] 3R_18040620_SNP [dm6]	T	C	2.349e^-4	0.992	INTERGENIC
2R	9594259	2R_9594259_SNP [dm3] 2R_13706754_SNP [dm6]	C	T	2.357e^-4	0.992	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	19497940	3L_19497940_SNP [dm3] 3L_19504840_SNP [dm6]	A	G	2.358e^-4	0.992	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3L	1015070	3L_1015070_SNP [dm3] 3L_1015070_SNP [dm6]	C	A	2.360e^-4	0.992	INTRON trio
3L	17128708	3L_17128708_SNP [dm3] 3L_17135608_SNP [dm6]	C	T	2.362e^-4	0.992	INTRON Rbp6
X	20362632	X_20362632_SNP [dm3] X_20491605_SNP [dm6]	C	T	2.362e^-4	0.992	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3L	2363459	3L_2363459_SNP [dm3] 3L_2363459_SNP [dm6]	G	A	2.365e^-4	0.992	DOWNSTREAM CG13801 INTERGENIC
3R	23434779	3R_23434779_SNP [dm3] 3R_27609057_SNP [dm6]	T	C	2.368e^-4	0.992	INTRON Tusp
3L	16807878	3L_16807878_SNP [dm3] 3L_16814778_SNP [dm6]	A	G	2.369e^-4	0.992	INTRON nudC & 1 other
3L	18848276	3L_18848276_SNP [dm3] 3L_18855176_SNP [dm6]	A	G	2.372e^-4	0.992	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3030058	3L_3030058_SNP [dm3] 3L_3030058_SNP [dm6]	T	C	2.374e^-4	0.992	INTERGENIC
2L	815254	2L_815254_SNP [dm3] 2L_815254_SNP [dm6]	G	T	2.376e^-4	0.992	UPSTREAM Pex12 INTRON Saf6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12090775	X_12090775_SNP [dm3] X_12196742_SNP [dm6]	G	A	2.380e^-4	0.992	INTRON Ten-a
X	18979446	X_18979446_SNP [dm3] X_19085413_SNP [dm6]	G	A	2.382e^-4	0.992	INTERGENIC
X	4296826	X_4296826_SNP [dm3] X_4402793_SNP [dm6]	T	C	2.389e^-4	0.992	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	18694507	2L_18694507_SNP [dm3] 2L_18694507_SNP [dm6]	C	T	2.392e^-4	0.992	INTRON CG10383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_ttk
3R	21711663	3R_21711663_SNP [dm3] 3R_25885941_SNP [dm6]	C	T	2.393e^-4	0.992	SYNONYMOUS_CODING SppL	TF binding site BDTNP1_TFBS_da
2L	9572815	2L_9572815_SNP [dm3] 2L_9572815_SNP [dm6]	A	G	2.409e^-4	0.992	SYNONYMOUS_CODING CG3838 DOWNSTREAM Mtpalpha
2L	2065042	2L_2065042_SNP [dm3] 2L_2065042_SNP [dm6]	T	C	2.417e^-4	0.992	INTRON dpr3
3L	16325932	3L_16325932_DEL [dm3] 3L_16332832_DEL [dm6]	CT	C	2.420e^-4	0.992	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
2R	1316325	2R_1316325_SNP [dm3] 2R_5428820_SNP [dm6]	A	G	2.436e^-4	0.992	INTRON laccase2	transposable element FlyBase
2L	7235280	2L_7235280_SNP [dm3] 2L_7235280_SNP [dm6]	G	T	2.437e^-4	0.992	INTRON Ndae1
X	19501577	X_19501577_SNP [dm3] X_19607544_SNP [dm6]	C	T	2.437e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
X	3919547	X_3919547_SNP [dm3] X_4025514_SNP [dm6]	C	T	2.438e^-4	0.992	INTERGENIC
3L	1395540	3L_1395540_SNP [dm3] 3L_1395540_SNP [dm6]	A	T	2.440e^-4	0.992	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15162491	3L_15162491_SNP [dm3] 3L_15169391_SNP [dm6]	A	G	2.442e^-4	0.992	INTERGENIC
X	2289192	X_2289192_DEL [dm3] X_2395159_DEL [dm6]	CTTATCTCCCCAC...	C	2.461e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	2009527	2L_2009527_SNP [dm3] 2L_2009527_SNP [dm6]	G	A	2.464e^-4	0.992	UPSTREAM tRNA:CR31944 & 1 other DOWNSTREAM Nplp4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	21497954	X_21497954_INS [dm3] X_21626927_INS [dm6]	A	GTTATTG	2.467e^-4	0.992	INTRON DIP1
3L	6052400	3L_6052400_SNP [dm3] 3L_6059300_SNP [dm6]	T	G	2.473e^-4	0.992	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	7056890	3L_7056890_SNP [dm3] 3L_7063790_SNP [dm6]	A	G	2.476e^-4	0.992	INTRON CG8641
2L	284285	2L_284285_SNP [dm3] 2L_284285_SNP [dm6]	C	A	2.477e^-4	0.992	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4071401	3L_4071401_SNP [dm3] 3L_4071401_SNP [dm6]	G	A	2.487e^-4	0.992	DOWNSTREAM Faa INTRON wit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	23380957	3R_23380957_SNP [dm3] 3R_27555235_SNP [dm6]	C	T	2.502e^-4	0.992	INTRON Klp98A
3L	6372625	3L_6372625_SNP [dm3] 3L_6379525_SNP [dm6]	A	G	2.504e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18440426	2R_18440426_SNP [dm3] 2R_22552921_SNP [dm6]	C	T	2.507e^-4	0.992	DOWNSTREAM CG6018 INTRON px
2L	8327673	2L_8327673_SNP [dm3] 2L_8327673_SNP [dm6]	T	A	2.515e^-4	0.992	INTRON CG14275
3L	16427398	3L_16427398_SNP [dm3] 3L_16434298_SNP [dm6]	C	A	2.523e^-4	0.992	INTRON CG33158 & 1 other
2L	5964623	2L_5964623_SNP [dm3] 2L_5964623_SNP [dm6]	A	G	2.526e^-4	0.992	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
X	19502144	X_19502144_SNP [dm3] X_19608111_SNP [dm6]	C	T	2.535e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	5328790	3R_5328790_SNP [dm3] 3R_9503068_SNP [dm6]	C	A	2.544e^-4	0.992	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3132641	3R_3132641_SNP [dm3] 3R_7306919_SNP [dm6]	G	C	2.555e^-4	0.992	INTRON rn	TF binding site mE1_TFBS_Trl
3R	23434777	3R_23434777_SNP [dm3] 3R_27609055_SNP [dm6]	T	C	2.558e^-4	0.992	INTRON Tusp
2R	20057962	2R_20057962_SNP [dm3] 2R_24170439_SNP [dm6]	C	G	2.561e^-4	0.992	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20061218	2R_20061218_SNP [dm3] 2R_24173695_SNP [dm6]	A	G	2.563e^-4	0.992	UTR_3_PRIME mRpS17 DOWNSTREAM CG3328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16486181	2R_16486181_SNP [dm3] 2R_20598676_SNP [dm6]	G	A	2.564e^-4	0.992	SYNONYMOUS_CODING bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16420595	3L_16420595_SNP [dm3] 3L_16427495_SNP [dm6]	C	T	2.568e^-4	0.992	INTRON CG33158 & 1 other
3R	22757807	3R_22757807_SNP [dm3] 3R_26932085_SNP [dm6]	A	G	2.577e^-4	0.992	INTRON sda
2L	3648966	2L_3648966_SNP [dm3] 2L_3648966_SNP [dm6]	T	A	2.591e^-4	0.992	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19507605	X_19507605_SNP [dm3] X_19613572_SNP [dm6]	T	A	2.594e^-4	0.992	UPSTREAM Shawn INTRON Shawn & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12959277	3L_12959277_SNP [dm3] 3L_12966177_SNP [dm6]	A	G	2.603e^-4	0.992	UPSTREAM Or69a INTRON Or69a
2L	5381705	2L_5381705_SNP [dm3] 2L_5381705_SNP [dm6]	T	A	2.603e^-4	0.992	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5422971	2L_5422971_SNP [dm3] 2L_5422971_SNP [dm6]	G	T	2.607e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16430498	2L_16430498_DEL [dm3] 2L_16430498_DEL [dm6]	TCT	T	2.634e^-4	0.992	INTRON CG5888
2R	20924668	2R_20924668_SNP [dm3] 2R_25037145_SNP [dm6]	A	C	2.654e^-4	0.992	SYNONYMOUS_CODING Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10563102	2L_10563102_SNP [dm3] 2L_10563102_SNP [dm6]	T	G	2.656e^-4	0.992	INTRON Trim9
2L	20683747	2L_20683747_SNP [dm3] 2L_20683747_SNP [dm6]	T	A	2.664e^-4	0.992	UTR_3_PRIME Hr38 DOWNSTREAM CG2617
3L	7060300	3L_7060300_SNP [dm3] 3L_7067200_SNP [dm6]	A	C	2.665e^-4	0.992	INTRON CG8641 & 1 other
3L	6385654	3L_6385654_SNP [dm3] 3L_6392554_SNP [dm6]	T	C	2.665e^-4	0.992	INTERGENIC
2R	13099971	2R_13099971_SNP [dm3] 2R_17212466_SNP [dm6]	T	G	2.672e^-4	0.992	INTERGENIC
3L	5145285	3L_5145285_SNP [dm3] 3L_5152185_SNP [dm6]	A	G	2.677e^-4	0.992	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16309484	3L_16309484_SNP [dm3] 3L_16316384_SNP [dm6]	A	C	2.678e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1393487	2R_1393487_SNP [dm3] 2R_5505982_SNP [dm6]	A	G	2.687e^-4	0.992	INTRON CG30438 & 1 other
3R	26235208	3R_26235208_SNP [dm3] 3R_30409486_SNP [dm6]	T	A	2.691e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1321054	2L_1321054_SNP [dm3] 2L_1321054_SNP [dm6]	C	T	2.701e^-4	0.992	INTERGENIC
2L	11139682	2L_11139682_SNP [dm3] 2L_11139682_SNP [dm6]	G	A	2.702e^-4	0.992	INTRON Gyc32E
2R	20590897	2R_20590897_SNP [dm3] 2R_24703374_SNP [dm6]	C	T	2.702e^-4	0.992	INTRON Mid1
3L	9620819	3L_9620819_SNP [dm3] 3L_9627719_SNP [dm6]	A	T	2.707e^-4	0.992	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
X	11147433	X_11147433_SNP [dm3] X_11253400_SNP [dm6]	T	G	2.712e^-4	0.992	INTRON CG44422
2L	12748810	2L_12748810_SNP [dm3] 2L_12748810_SNP [dm6]	T	C	2.724e^-4	0.992	INTERGENIC
3L	10572600	3L_10572600_SNP [dm3] 3L_10579500_SNP [dm6]	A	G	2.726e^-4	0.992	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	17214269	3L_17214269_SNP [dm3] 3L_17221169_SNP [dm6]	C	T	2.730e^-4	0.992	INTRON Rbp6
2L	9577163	2L_9577163_DEL [dm3] 2L_9577163_DEL [dm6]	ACAA	G	2.734e^-4	0.992	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7923415	3L_7923415_SNP [dm3] 3L_7930315_SNP [dm6]	C	A	2.746e^-4	0.992	SYNONYMOUS_CODING syd
2L	5730632	2L_5730632_SNP [dm3] 2L_5730632_SNP [dm6]	G	A	2.749e^-4	0.992	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5730800	2L_5730800_SNP [dm3] 2L_5730800_SNP [dm6]	G	A	2.749e^-4	0.992	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9577640	2R_9577640_SNP [dm3] 2R_13690135_SNP [dm6]	C	T	2.765e^-4	0.992	INTRON fas
3R	25792749	3R_25792749_INS [dm3] 3R_29967027_INS [dm6]	A	AC	2.767e^-4	0.992	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25792765	3R_25792765_SNP [dm3] 3R_29967043_SNP [dm6]	G	A	2.767e^-4	0.992	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15591491	3L_15591491_SNP [dm3] 3L_15598391_SNP [dm6]	G	C	2.770e^-4	0.992	INTRON RhoGAP71E
3L	10921896	3L_10921896_SNP [dm3] 3L_10928796_SNP [dm6]	C	T	2.774e^-4	0.992	INTERGENIC
2R	7291403	2R_7291403_SNP [dm3] 2R_11403898_SNP [dm6]	G	A	2.776e^-4	0.992	UPSTREAM tRNA:CR45106 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14776628	3R_14776628_SNP [dm3] 3R_18950906_SNP [dm6]	C	T	2.777e^-4	0.992	INTRON CG42613 & 1 other
2R	1862646	2R_1862646_SNP [dm3] 2R_5975141_SNP [dm6]	T	A	2.777e^-4	0.992	UTR_3_PRIME mle UPSTREAM BubR1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6433075	3R_6433075_SNP [dm3] 3R_10607353_SNP [dm6]	C	T	2.779e^-4	0.992	INTRON hth
3R	19458348	3R_19458348_SNP [dm3] 3R_23632626_SNP [dm6]	G	A	2.781e^-4	0.992	UTR_5_PRIME CG31145 INTRON CG31145	TF binding site mE1_TFBS_inv
3R	22757824	3R_22757824_SNP [dm3] 3R_26932102_SNP [dm6]	C	G	2.803e^-4	0.992	INTRON sda
3R	20220205	3R_20220205_SNP [dm3] 3R_24394483_SNP [dm6]	A	T	2.806e^-4	0.992	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
3L	16427396	3L_16427396_SNP [dm3] 3L_16434296_SNP [dm6]	A	C	2.812e^-4	0.992	INTRON CG33158 & 1 other
X	15437184	X_15437184_SNP [dm3] X_15543151_SNP [dm6]	G	A	2.816e^-4	0.992	INTRON Ac13E
3R	14343988	3R_14343988_SNP [dm3] 3R_18518266_SNP [dm6]	A	G	2.816e^-4	0.992	INTRON fru
2R	16321518	2R_16321518_SNP [dm3] 2R_20434013_SNP [dm6]	G	A	2.818e^-4	0.992	INTRON CG12484
3R	5328789	3R_5328789_SNP [dm3] 3R_9503067_SNP [dm6]	A	T	2.822e^-4	0.992	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6176249	X_6176249_INS [dm3] X_6282216_INS [dm6]	A	AGGTATA	2.832e^-4	0.992	UTR_3_PRIME CG11700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13266967	X_13266967_INS [dm3] X_13372934_INS [dm6]	A	ATATGTA	2.850e^-4	0.992	UPSTREAM CG1640 INTRON CG1640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19063530	2R_19063530_SNP [dm3] 2R_23176007_SNP [dm6]	G	A	2.852e^-4	0.992	INTRON CG34371
3R	14453825	3R_14453825_SNP [dm3] 3R_18628103_SNP [dm6]	A	C	2.866e^-4	0.992	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
2L	14175382	2L_14175382_SNP [dm3] 2L_14175382_SNP [dm6]	A	T	2.870e^-4	0.992	INTRON CG43333
3R	23436964	3R_23436964_SNP [dm3] 3R_27611242_SNP [dm6]	C	A	2.875e^-4	0.992	INTRON Tusp
2L	8884765	2L_8884765_SNP [dm3] 2L_8884765_SNP [dm6]	A	C	2.879e^-4	0.992	INTERGENIC
X	13872538	X_13872538_SNP [dm3] X_13978505_SNP [dm6]	G	A	2.885e^-4	0.992	INTRON mamo
X	6806938	X_6806938_SNP [dm3] X_6912905_SNP [dm6]	A	T	2.907e^-4	0.992	INTRON CG14431
2R	16102034	2R_16102034_SNP [dm3] 2R_20214529_SNP [dm6]	G	A	2.913e^-4	0.992	INTERGENIC
2R	8565675	2R_8565675_SNP [dm3] 2R_12678170_SNP [dm6]	C	A	2.918e^-4	0.992	INTRON CG42708
3R	25500950	3R_25500950_SNP [dm3] 3R_29675228_SNP [dm6]	T	C	2.926e^-4	0.992	SYNONYMOUS_CODING Bub3 UPSTREAM Cap-D2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	6866462	X_6866462_SNP [dm3] X_6972429_SNP [dm6]	A	C	2.935e^-4	0.992	UTR_3_PRIME CG3040 DOWNSTREAM CG4586
3L	17997542	3L_17997542_SNP [dm3] 3L_18004442_SNP [dm6]	A	T	2.939e^-4	0.992	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
X	17342149	X_17342149_SNP [dm3] X_17448116_SNP [dm6]	C	T	2.956e^-4	0.992	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5463651	2L_5463651_SNP [dm3] 2L_5463651_SNP [dm6]	T	C	2.964e^-4	0.992	INTRON mid
3L	13157570	3L_13157570_INS [dm3] 3L_13164470_INS [dm6]	C	GGAGGA	2.967e^-4	0.992	INTERGENIC
X	5298236	X_5298236_SNP [dm3] X_5404203_SNP [dm6]	C	A	2.968e^-4	0.992	UTR_3_PRIME SK
3L	12626136	3L_12626136_SNP [dm3] 3L_12633036_SNP [dm6]	T	C	2.977e^-4	0.992	INTRON CR32111	TF binding site mE1_TFBS_cad
2L	818773	2L_818773_SNP [dm3] 2L_818773_SNP [dm6]	C	G	2.978e^-4	0.992	NON_SYNONYMOUS_CODING CG3876 UPSTREAM CG15880 DOWNSTREAM Pex12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2015465	2L_2015465_SNP [dm3] 2L_2015465_SNP [dm6]	C	T	2.980e^-4	0.992	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
2R	17005619	2R_17005619_SNP [dm3] 2R_21118114_SNP [dm6]	A	C	2.982e^-4	0.992	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2R	10474420	2R_10474420_DEL [dm3] 2R_14586915_DEL [dm6]	TAAAT	T	2.982e^-4	0.992	UTR_3_PRIME ttv	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16986049	2R_16986049_SNP [dm3] 2R_21098544_SNP [dm6]	T	C	3.008e^-4	0.992	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2631506	3L_2631506_SNP [dm3] 3L_2631506_SNP [dm6]	C	A	3.011e^-4	0.992	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	23022635	3R_23022635_SNP [dm3] 3R_27196913_SNP [dm6]	G	T	3.017e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6821216	2L_6821216_SNP [dm3] 2L_6821216_SNP [dm6]	A	G	3.024e^-4	0.992	UPSTREAM sens-2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19018414	X_19018414_SNP [dm3] X_19124381_SNP [dm6]	G	C	3.049e^-4	0.992	START_GAINED CG15882 UTR_5_PRIME CG15882 DOWNSTREAM tgy
3R	19032358	3R_19032358_SNP [dm3] 3R_23206636_SNP [dm6]	T	G	3.050e^-4	0.992	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	5370462	3L_5370462_SNP [dm3] 3L_5377362_SNP [dm6]	G	A	3.055e^-4	0.992	UPSTREAM CR45743 INTERGENIC
X	1394661	X_1394661_SNP [dm3] X_1500628_SNP [dm6]	G	A	3.060e^-4	0.992	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
2R	4539943	2R_4539943_SNP [dm3] 2R_8652438_SNP [dm6]	C	T	3.068e^-4	0.992	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	6540246	X_6540246_SNP [dm3] X_6646213_SNP [dm6]	A	G	3.072e^-4	0.992	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	18685862	2R_18685862_SNP [dm3] 2R_22798357_SNP [dm6]	G	A	3.081e^-4	0.992	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12993242	3L_12993242_SNP [dm3] 3L_13000142_SNP [dm6]	G	T	3.086e^-4	0.992	INTERGENIC
3R	27467494	3R_27467494_SNP [dm3] 3R_31641772_SNP [dm6]	C	T	3.086e^-4	0.992	INTRON kek6
3L	2564329	3L_2564329_SNP [dm3] 3L_2564329_SNP [dm6]	T	C	3.087e^-4	0.992	INTRON msn
2L	13969902	2L_13969902_SNP [dm3] 2L_13969902_SNP [dm6]	T	C	3.094e^-4	0.992	NON_SYNONYMOUS_CODING NimB4 UPSTREAM NimB5	TF binding site mE1_TFBS_chinmo
2R	9583630	2R_9583630_SNP [dm3] 2R_13696125_SNP [dm6]	A	C	3.103e^-4	0.992	INTRON fas
3R	12566806	3R_12566806_SNP [dm3] 3R_16741084_SNP [dm6]	C	A	3.104e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14970576	2L_14970576_SNP [dm3] 2L_14970576_SNP [dm6]	C	A	3.106e^-4	0.992	INTRON CG42313
3L	6360543	3L_6360543_SNP [dm3] 3L_6367443_SNP [dm6]	C	T	3.108e^-4	0.992	INTERGENIC
2R	16994592	2R_16994592_SNP [dm3] 2R_21107087_SNP [dm6]	C	T	3.110e^-4	0.992	INTRON ktub
3L	9440412	3L_9440412_SNP [dm3] 3L_9447312_SNP [dm6]	T	C	3.117e^-4	0.992	DOWNSTREAM CG33926 INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	5747984	2L_5747984_SNP [dm3] 2L_5747984_SNP [dm6]	T	G	3.119e^-4	0.992	DOWNSTREAM CG11029 INTRON CG11030
2R	14164531	2R_14164531_SNP [dm3] 2R_18277026_SNP [dm6]	C	T	3.121e^-4	0.992	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13953337	3R_13953337_SNP [dm3] 3R_18127615_SNP [dm6]	C	T	3.123e^-4	0.992	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1580568	2L_1580568_SNP [dm3] 2L_1580568_SNP [dm6]	G	A	3.124e^-4	0.992	INTRON haf
3L	7060319	3L_7060319_SNP [dm3] 3L_7067219_SNP [dm6]	G	A	3.148e^-4	0.992	DOWNSTREAM CG32391 INTRON CG8641 & 1 other
2L	5674184	2L_5674184_SNP [dm3] 2L_5674184_SNP [dm6]	T	A	3.150e^-4	0.992	INTERGENIC
2L	1080153	2L_1080153_SNP [dm3] 2L_1080153_SNP [dm6]	G	A	3.153e^-4	0.992	NON_SYNONYMOUS_CODING ast UPSTREAM Atg4a	TF binding site mE1_TFBS_sens
2R	6996154	2R_6996154_INS [dm3] 2R_11108649_INS [dm6]	C	CC	3.156e^-4	0.992	INTRON luna
2R	12195068	2R_12195068_DEL [dm3] 2R_16307563_DEL [dm6]	GCACACCG	G	3.157e^-4	0.992	UTR_5_PRIME Nox UPSTREAM CR45232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6699661	3L_6699661_SNP [dm3] 3L_6706561_SNP [dm6]	C	A	3.161e^-4	0.992	INTRON CG8519
2L	18692957	2L_18692957_SNP [dm3] 2L_18692957_SNP [dm6]	A	G	3.179e^-4	0.992	INTRON CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20362649	X_20362649_SNP [dm3] X_20491622_SNP [dm6]	A	G	3.189e^-4	0.992	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3R	2685318	3R_2685318_SNP [dm3] 3R_6859596_SNP [dm6]	T	C	3.195e^-4	0.992	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4227606	2L_4227606_SNP [dm3] 2L_4227606_SNP [dm6]	A	T	3.201e^-4	0.992	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	10563435	2L_10563435_SNP [dm3] 2L_10563435_SNP [dm6]	C	T	3.201e^-4	0.992	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12247600	3R_12247600_SNP [dm3] 3R_16421878_SNP [dm6]	A	G	3.205e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
3L	6385652	3L_6385652_SNP [dm3] 3L_6392552_SNP [dm6]	A	C	3.208e^-4	0.992	INTERGENIC
2L	18693035	2L_18693035_SNP [dm3] 2L_18693035_SNP [dm6]	G	T	3.218e^-4	0.992	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14164576	2R_14164576_SNP [dm3] 2R_18277071_SNP [dm6]	A	G	3.219e^-4	0.992	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3792979	3L_3792979_SNP [dm3] 3L_3792979_SNP [dm6]	A	C	3.220e^-4	0.992	INTRON CG32264
3R	27561244	3R_27561244_DEL [dm3] 3R_31735522_DEL [dm6]	GTTTTATTCG	G	3.224e^-4	0.992	UTR_3_PRIME CstF-50 DOWNSTREAM ttk	TF binding site mE1_TFBS_cad
2R	8565659	2R_8565659_DEL [dm3] 2R_12678154_DEL [dm6]	AT	A	3.228e^-4	0.992	INTRON CG42708
2R	8565662	2R_8565662_MNP [dm3] 2R_12678157_MNP [dm6]	TCT	CAG	3.228e^-4	0.992	INTRON CG42708
2R	8565680	2R_8565680_SNP [dm3] 2R_12678175_SNP [dm6]	A	T	3.228e^-4	0.992	INTRON CG42708
2R	11174565	2R_11174565_SNP [dm3] 2R_15287060_SNP [dm6]	C	T	3.230e^-4	0.992	UPSTREAM Trpm INTRON Trpm
2L	16838402	2L_16838402_SNP [dm3] 2L_16838402_SNP [dm6]	T	C	3.234e^-4	0.992	UPSTREAM SclB & 1 other INTRON SclB & 1 other
2R	14164612	2R_14164612_SNP [dm3] 2R_18277107_SNP [dm6]	A	T	3.248e^-4	0.992	UTR_5_PRIME Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5640252	2L_5640252_SNP [dm3] 2L_5640252_SNP [dm6]	T	G	3.258e^-4	0.992	UPSTREAM mir-959 & 2 others INTRON CG31646
3R	19458351	3R_19458351_SNP [dm3] 3R_23632629_SNP [dm6]	T	C	3.263e^-4	0.992	UTR_5_PRIME CG31145 INTRON CG31145	TF binding site mE1_TFBS_inv
2L	20808278	2L_20808278_SNP [dm3] 2L_20808278_SNP [dm6]	G	A	3.264e^-4	0.992	INTRON CG9328
3L	10632892	3L_10632892_SNP [dm3] 3L_10639792_SNP [dm6]	C	T	3.266e^-4	0.992	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
3R	14653909	3R_14653909_SNP [dm3] 3R_18828187_SNP [dm6]	T	G	3.316e^-4	0.992	INTRON CG18208
3L	12959262	3L_12959262_SNP [dm3] 3L_12966162_SNP [dm6]	T	C	3.323e^-4	0.992	UPSTREAM Or69a INTRON Or69a
X	6557331	X_6557331_SNP [dm3] X_6663298_SNP [dm6]	A	G	3.337e^-4	0.992	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
2R	13243878	2R_13243878_SNP [dm3] 2R_17356373_SNP [dm6]	C	T	3.351e^-4	0.992	INTRON mbl
3L	2283016	3L_2283016_SNP [dm3] 3L_2283016_SNP [dm6]	A	T	3.351e^-4	0.992	UTR_5_PRIME MsR2
X	4765487	X_4765487_SNP [dm3] X_4871454_SNP [dm6]	A	C	3.353e^-4	0.992	INTRON CG42594
3L	16427705	3L_16427705_SNP [dm3] 3L_16434605_SNP [dm6]	T	A	3.355e^-4	0.992	INTRON CG33158 & 1 other
X	12090757	X_12090757_SNP [dm3] X_12196724_SNP [dm6]	T	A	3.356e^-4	0.992	INTRON Ten-a
3L	14979017	3L_14979017_SNP [dm3] 3L_14985917_SNP [dm6]	A	C	3.358e^-4	0.992	INTRON mnd	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	10893565	3L_10893565_DEL [dm3] 3L_10900465_DEL [dm6]	GG	G	3.358e^-4	0.992	INTERGENIC
2L	635545	2L_635545_SNP [dm3] 2L_635545_SNP [dm6]	A	G	3.362e^-4	0.992	INTERGENIC
3L	15176131	3L_15176131_SNP [dm3] 3L_15183031_SNP [dm6]	C	A	3.365e^-4	0.992	INTERGENIC
2R	6684316	2R_6684316_DEL [dm3] 2R_10796811_DEL [dm6]	TT	T	3.369e^-4	0.992	INTRON CG33144
2L	2696278	2L_2696278_SNP [dm3] 2L_2696278_SNP [dm6]	G	A	3.371e^-4	0.992	NON_SYNONYMOUS_CODING CG15398 INTRON CG31690
2R	8565682	2R_8565682_SNP [dm3] 2R_12678177_SNP [dm6]	T	C	3.374e^-4	0.992	INTRON CG42708
2R	8565688	2R_8565688_INS [dm3] 2R_12678183_INS [dm6]	A	AGGT	3.374e^-4	0.992	INTRON CG42708
2R	8565696	2R_8565696_SNP [dm3] 2R_12678191_SNP [dm6]	A	G	3.374e^-4	0.992	INTRON CG42708
2L	12463780	2L_12463780_INS [dm3] 2L_12463780_INS [dm6]	C	CGATAAACG	3.378e^-4	0.992	INTRON bun
2L	3328248	2L_3328248_SNP [dm3] 2L_3328248_SNP [dm6]	G	A	3.380e^-4	0.992	SYNONYMOUS_CODING CG33282
3L	9620770	3L_9620770_SNP [dm3] 3L_9627670_SNP [dm6]	C	A	3.381e^-4	0.992	SYNONYMOUS_CODING Or67b DOWNSTREAM CG3335
3R	14906328	3R_14906328_SNP [dm3] 3R_19080606_SNP [dm6]	C	A	3.389e^-4	0.992	INTRON cdi
3R	21775373	3R_21775373_SNP [dm3] 3R_25949651_SNP [dm6]	T	G	3.395e^-4	0.992	INTRON CCAP-R
X	3221410	X_3221410_SNP [dm3] X_3327377_SNP [dm6]	A	G	3.414e^-4	0.992	INTRON CR44886 & 1 other
2R	19063516	2R_19063516_SNP [dm3] 2R_23175993_SNP [dm6]	A	G	3.417e^-4	0.992	INTRON CG34371
3L	15214237	3L_15214237_SNP [dm3] 3L_15221137_SNP [dm6]	A	T	3.421e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22263309	3R_22263309_SNP [dm3] 3R_26437587_SNP [dm6]	G	T	3.422e^-4	0.992	INTERGENIC
3L	6698247	3L_6698247_SNP [dm3] 3L_6705147_SNP [dm6]	T	A	3.438e^-4	0.992	UTR_5_PRIME CG8519
2R	19317211	2R_19317211_SNP [dm3] 2R_23429688_SNP [dm6]	C	G	3.439e^-4	0.992	INTRON CG9815
X	3210921	X_3210921_DEL [dm3] X_3316888_DEL [dm6]	CTTC	C	3.441e^-4	0.992	UPSTREAM CG10793 INTRON dnc & 1 other
2R	18903702	2R_18903702_SNP [dm3] 2R_23016179_SNP [dm6]	G	A	3.453e^-4	0.992	INTRON twi & 1 other
2L	12780301	2L_12780301_SNP [dm3] 2L_12780301_SNP [dm6]	C	A	3.453e^-4	0.992	INTERGENIC
3L	9979012	3L_9979012_SNP [dm3] 3L_9985912_SNP [dm6]	C	T	3.459e^-4	0.992	INTRON dpr6
2R	8565667	2R_8565667_SNP [dm3] 2R_12678162_SNP [dm6]	G	T	3.467e^-4	0.992	INTRON CG42708
2L	635445	2L_635445_SNP [dm3] 2L_635445_SNP [dm6]	A	G	3.476e^-4	0.992	INTERGENIC
3R	21236413	3R_21236413_SNP [dm3] 3R_25410691_SNP [dm6]	G	A	3.478e^-4	0.992	INTRON Fur1
2R	18720921	2R_18720921_SNP [dm3] 2R_22833398_SNP [dm6]	G	T	3.485e^-4	0.992	SYNONYMOUS_CODING CG30265
3L	11509025	3L_11509025_SNP [dm3] 3L_11515925_SNP [dm6]	T	C	3.494e^-4	0.992	INTRON CG7512
2R	16986003	2R_16986003_SNP [dm3] 2R_21098498_SNP [dm6]	A	G	3.494e^-4	0.992	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	11683188	2L_11683188_SNP [dm3] 2L_11683188_SNP [dm6]	C	G	3.502e^-4	0.992	INTERGENIC
3L	12991939	3L_12991939_SNP [dm3] 3L_12998839_SNP [dm6]	A	G	3.517e^-4	0.992	INTERGENIC
2R	1747381	2R_1747381_SNP [dm3] 2R_5859876_SNP [dm6]	A	T	3.520e^-4	0.992	UTR_3_PRIME dpr12
3L	16325938	3L_16325938_SNP [dm3] 3L_16332838_SNP [dm6]	C	A	3.529e^-4	0.992	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
2R	14164573	2R_14164573_SNP [dm3] 2R_18277068_SNP [dm6]	C	T	3.532e^-4	0.992	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	6796074	3R_6796074_DEL [dm3] 3R_10970352_DEL [dm6]	AAAC	A	3.540e^-4	0.992	DOWNSTREAM CR45561 INTERGENIC
3L	13049472	3L_13049472_SNP [dm3] 3L_13056372_SNP [dm6]	T	G	3.540e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14487626	2L_14487626_SNP [dm3] 2L_14487626_SNP [dm6]	T	A	3.543e^-4	0.992	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7060339	3L_7060339_SNP [dm3] 3L_7067239_SNP [dm6]	C	G	3.552e^-4	0.992	DOWNSTREAM CG32391 INTRON CG8641 & 1 other
X	21499329	X_21499329_SNP [dm3] X_21628302_SNP [dm6]	C	T	3.554e^-4	0.992	INTRON DIP1
X	10326864	X_10326864_SNP [dm3] X_10432831_SNP [dm6]	T	C	3.557e^-4	0.992	UPSTREAM CG12640 INTRON CG32683
2L	4826271	2L_4826271_SNP [dm3] 2L_4826271_SNP [dm6]	C	A	3.559e^-4	0.992	INTRON CG15628
2L	5671158	2L_5671158_SNP [dm3] 2L_5671158_SNP [dm6]	G	C	3.573e^-4	0.992	DOWNSTREAM Hsp60C INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6698274	3L_6698274_SNP [dm3] 3L_6705174_SNP [dm6]	C	A	3.582e^-4	0.992	UTR_5_PRIME CG8519
3R	14343976	3R_14343976_SNP [dm3] 3R_18518254_SNP [dm6]	C	T	3.590e^-4	0.992	INTRON fru
3L	2282548	3L_2282548_SNP [dm3] 3L_2282548_SNP [dm6]	T	A	3.623e^-4	0.992	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	20632728	2R_20632728_SNP [dm3] 2R_24745205_SNP [dm6]	T	C	3.625e^-4	0.992	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	2258011	2L_2258011_SNP [dm3] 2L_2258011_SNP [dm6]	A	G	3.628e^-4	0.992	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6755927	3L_6755927_SNP [dm3] 3L_6762827_SNP [dm6]	C	T	3.630e^-4	0.992	INTRON CG32392
2R	14277620	2R_14277620_SNP [dm3] 2R_18390115_SNP [dm6]	T	C	3.634e^-4	0.992	SYNONYMOUS_CODING CG15065 DOWNSTREAM CG15068 & 1 other
3L	14618631	3L_14618631_SNP [dm3] 3L_14625531_SNP [dm6]	T	A	3.636e^-4	0.992	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19497511	3L_19497511_SNP [dm3] 3L_19504411_SNP [dm6]	C	T	3.637e^-4	0.992	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
2R	8565694	2R_8565694_SNP [dm3] 2R_12678189_SNP [dm6]	A	G	3.637e^-4	0.992	INTRON CG42708
2R	6740800	2R_6740800_SNP [dm3] 2R_10853295_SNP [dm6]	T	C	3.648e^-4	0.992	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18023756	2L_18023756_SNP [dm3] 2L_18023756_SNP [dm6]	A	C	3.662e^-4	0.992	INTRON rdo
2L	20808319	2L_20808319_SNP [dm3] 2L_20808319_SNP [dm6]	A	C	3.667e^-4	0.992	INTRON CG9328
3L	16424107	3L_16424107_SNP [dm3] 3L_16431007_SNP [dm6]	A	G	3.680e^-4	0.992	INTRON CG33158 & 1 other
3L	12770186	3L_12770186_SNP [dm3] 3L_12777086_SNP [dm6]	T	A	3.683e^-4	0.992	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3R	12702890	3R_12702890_SNP [dm3] 3R_16877168_SNP [dm6]	A	T	3.685e^-4	0.992	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	767375	X_767375_SNP [dm3] X_873342_SNP [dm6]	G	A	3.692e^-4	0.992	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	12315560	2R_12315560_SNP [dm3] 2R_16428055_SNP [dm6]	A	T	3.705e^-4	0.992	INTRON Sema-2b
X	19509341	X_19509341_SNP [dm3] X_19615308_SNP [dm6]	A	G	3.708e^-4	0.992	SYNONYMOUS_CODING Shawn UTR_3_PRIME Tyler UPSTREAM CG14210	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13053896	3L_13053896_SNP [dm3] 3L_13060796_SNP [dm6]	T	G	3.711e^-4	0.992	NON_SYNONYMOUS_CODING CG14115	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10448126	3L_10448126_SNP [dm3] 3L_10455026_SNP [dm6]	T	C	3.725e^-4	0.992	INTERGENIC
2L	16465950	2L_16465950_SNP [dm3] 2L_16465950_SNP [dm6]	G	A	3.730e^-4	0.992	DOWNSTREAM dac INTERGENIC	regulatory region REDfly_CRMs
2L	15737229	2L_15737229_SNP [dm3] 2L_15737229_SNP [dm6]	G	T	3.739e^-4	0.992	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10560582	2L_10560582_SNP [dm3] 2L_10560582_SNP [dm6]	C	A	3.741e^-4	0.992	INTRON Trim9
2L	6173906	2L_6173906_SNP [dm3] 2L_6173906_SNP [dm6]	G	T	3.746e^-4	0.992	INTERGENIC
3R	22263364	3R_22263364_SNP [dm3] 3R_26437642_SNP [dm6]	T	A	3.755e^-4	0.992	INTERGENIC
2R	2102969	2R_2102969_SNP [dm3] 2R_6215464_SNP [dm6]	G	T	3.757e^-4	0.992	DOWNSTREAM CR44161 INTRON bin3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6557291	X_6557291_SNP [dm3] X_6663258_SNP [dm6]	T	A	3.761e^-4	0.992	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
2L	284283	2L_284283_SNP [dm3] 2L_284283_SNP [dm6]	C	T	3.762e^-4	0.992	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17135117	3L_17135117_SNP [dm3] 3L_17142017_SNP [dm6]	G	A	3.768e^-4	0.992	INTRON Rbp6
X	19488665	X_19488665_SNP [dm3] X_19594632_SNP [dm6]	A	C	3.770e^-4	0.992	INTRON CG14205
2L	12609703	2L_12609703_SNP [dm3] 2L_12609703_SNP [dm6]	T	A	3.773e^-4	0.992	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
X	19505388	X_19505388_SNP [dm3] X_19611355_SNP [dm6]	C	A	3.774e^-4	0.992	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other DOWNSTREAM CG14207
3L	5886649	3L_5886649_SNP [dm3] 3L_5893549_SNP [dm6]	G	A	3.790e^-4	0.992	INTERGENIC
3L	10575533	3L_10575533_DEL [dm3] 3L_10582433_DEL [dm6]	TA	T	3.799e^-4	0.992	INTRON A2bp1
3R	21821516	3R_21821516_SNP [dm3] 3R_25995794_SNP [dm6]	A	G	3.800e^-4	0.992	DOWNSTREAM CG43116 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3045990	3L_3045990_SNP [dm3] 3L_3045990_SNP [dm6]	G	A	3.803e^-4	0.992	SYNONYMOUS_CODING scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	6755921	3L_6755921_DEL [dm3] 3L_6762821_DEL [dm6]	ATTTT	A	3.816e^-4	0.992	INTRON CG32392
2L	6173913	2L_6173913_SNP [dm3] 2L_6173913_SNP [dm6]	G	A	3.817e^-4	0.992	INTERGENIC
X	14405287	X_14405287_SNP [dm3] X_14511254_SNP [dm6]	T	C	3.826e^-4	0.992	INTERGENIC
X	8927791	X_8927791_SNP [dm3] X_9033758_SNP [dm6]	A	G	3.834e^-4	0.992	INTRON CR43836 & 1 other
2R	18981261	2R_18981261_SNP [dm3] 2R_23093738_SNP [dm6]	T	A	3.846e^-4	0.992	NON_SYNONYMOUS_CODING CG9876
2L	2110613	2L_2110613_SNP [dm3] 2L_2110613_SNP [dm6]	A	G	3.862e^-4	0.992	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12780326	2L_12780326_SNP [dm3] 2L_12780326_SNP [dm6]	A	G	3.866e^-4	0.992	INTERGENIC
2R	8565697	2R_8565697_SNP [dm3] 2R_12678192_SNP [dm6]	T	G	3.866e^-4	0.992	INTRON CG42708
3R	21830009	3R_21830009_SNP [dm3] 3R_26004287_SNP [dm6]	G	A	3.870e^-4	0.992	DOWNSTREAM E_spl_mbeta-HLH EXON CR45038	TF binding site mE1_TFBS_sens
3L	12960450	3L_12960450_SNP [dm3] 3L_12967350_SNP [dm6]	A	G	3.871e^-4	0.992	SYNONYMOUS_CODING Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	559460	2R_559460_SNP [dm3] 2R_4671955_SNP [dm6]	A	T	3.876e^-4	0.992	UTR_5_PRIME CG17883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	5219794	3L_5219794_SNP [dm3] 3L_5226694_SNP [dm6]	T	G	3.887e^-4	0.992	INTRON shep
2L	635509	2L_635509_SNP [dm3] 2L_635509_SNP [dm6]	T	C	3.895e^-4	0.992	INTERGENIC
2L	5646650	2L_5646650_SNP [dm3] 2L_5646650_SNP [dm6]	G	A	3.895e^-4	0.992	INTRON CG31646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	2673177	3R_2673177_SNP [dm3] 3R_6847455_SNP [dm6]	A	G	3.899e^-4	0.992	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	18366807	X_18366807_SNP [dm3] X_18472774_SNP [dm6]	G	A	3.908e^-4	0.992	INTRON CG32547
X	12001890	X_12001890_SNP [dm3] X_12107857_SNP [dm6]	A	G	3.917e^-4	0.992	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	18311170	2R_18311170_SNP [dm3] 2R_22423665_SNP [dm6]	A	G	3.920e^-4	0.992	SYNONYMOUS_CODING rad50
X	3880011	X_3880011_INS [dm3] X_3985978_INS [dm6]	T	TTGC	3.920e^-4	0.992	INTERGENIC
2R	13099996	2R_13099996_SNP [dm3] 2R_17212491_SNP [dm6]	C	A	3.939e^-4	0.992	INTERGENIC
2L	14014158	2L_14014158_SNP [dm3] 2L_14014158_SNP [dm6]	A	G	3.944e^-4	0.992	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1523662	2L_1523662_SNP [dm3] 2L_1523662_SNP [dm6]	T	C	3.944e^-4	0.992	SPLICE_SITE_REGION Or22b INTRON Or22b
2R	13099930	2R_13099930_SNP [dm3] 2R_17212425_SNP [dm6]	T	C	3.945e^-4	0.992	INTERGENIC
2R	11736369	2R_11736369_SNP [dm3] 2R_15848864_SNP [dm6]	C	T	3.945e^-4	0.992	UTR_5_PRIME tun
2L	330228	2L_330228_SNP [dm3] 2L_330228_SNP [dm6]	G	A	3.953e^-4	0.992	SYNONYMOUS_CODING CG31921 UPSTREAM CG43755 INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	6452353	2R_6452353_SNP [dm3] 2R_10564848_SNP [dm6]	T	G	3.956e^-4	0.992	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	27328959	3R_27328959_SNP [dm3] 3R_31503237_SNP [dm6]	T	G	3.959e^-4	0.992	INTRON mey	TF binding site mE1_TFBS_cad
3L	16185305	3L_16185305_SNP [dm3] 3L_16192205_SNP [dm6]	G	T	3.962e^-4	0.992	INTERGENIC
X	19507082	X_19507082_SNP [dm3] X_19613049_SNP [dm6]	A	G	3.962e^-4	0.992	NON_SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn UTR_3_PRIME Tyler UPSTREAM Shawn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18756000	3R_18756000_SNP [dm3] 3R_22930278_SNP [dm6]	C	T	3.964e^-4	0.992	INTRON klg
2R	14216251	2R_14216251_SNP [dm3] 2R_18328746_SNP [dm6]	A	G	3.973e^-4	0.992	INTRON sbb
3L	17128695	3L_17128695_SNP [dm3] 3L_17135595_SNP [dm6]	T	C	3.979e^-4	0.992	INTRON Rbp6
2L	9572896	2L_9572896_SNP [dm3] 2L_9572896_SNP [dm6]	C	T	3.984e^-4	0.992	SYNONYMOUS_CODING CG3838 DOWNSTREAM Mtpalpha
3R	22263356	3R_22263356_SNP [dm3] 3R_26437634_SNP [dm6]	C	T	3.989e^-4	0.992	INTERGENIC
2L	20807130	2L_20807130_SNP [dm3] 2L_20807130_SNP [dm6]	A	G	3.991e^-4	0.992	INTRON CG9328
3R	6461320	3R_6461320_SNP [dm3] 3R_10635598_SNP [dm6]	A	C	4.000e^-4	0.992	INTRON hth
2L	1580566	2L_1580566_SNP [dm3] 2L_1580566_SNP [dm6]	G	A	4.001e^-4	0.992	INTRON haf
X	6557463	X_6557463_INS [dm3] X_6663430_INS [dm6]	T	AGGAAAG	4.005e^-4	0.992	INTRON Ctr1A
2L	12064109	2L_12064109_SNP [dm3] 2L_12064109_SNP [dm6]	G	T	4.015e^-4	0.992	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2L	8328819	2L_8328819_SNP [dm3] 2L_8328819_SNP [dm6]	T	A	4.021e^-4	0.992	UPSTREAM CG14275 INTRON CG14275	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25024709	3R_25024709_SNP [dm3] 3R_29198987_SNP [dm6]	T	C	4.028e^-4	0.992	INTRON CG14515
3L	6331448	3L_6331448_DEL [dm3] 3L_6338348_DEL [dm6]	GCTGTAGTG	AAA	4.028e^-4	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2L	3180051	2L_3180051_SNP [dm3] 2L_3180051_SNP [dm6]	T	C	4.041e^-4	0.992	INTRON CG34393
3L	2638614	3L_2638614_SNP [dm3] 3L_2638614_SNP [dm6]	G	A	4.047e^-4	0.992	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3867761	2R_3867761_SNP [dm3] 2R_7980256_SNP [dm6]	A	G	4.062e^-4	0.992	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6092536	2R_6092536_SNP [dm3] 2R_10205031_SNP [dm6]	T	A	4.064e^-4	0.992	UTR_3_PRIME Hr46 DOWNSTREAM Hr46 & 1 other
3R	6461330	3R_6461330_DEL [dm3] 3R_10635608_DEL [dm6]	AA	A	4.073e^-4	0.992	INTRON hth
3L	11087274	3L_11087274_SNP [dm3] 3L_11094174_SNP [dm6]	G	C	4.078e^-4	0.992	UPSTREAM JIL-1 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3L	12994998	3L_12994998_SNP [dm3] 3L_13001898_SNP [dm6]	T	C	4.089e^-4	0.992	INTERGENIC
2L	20808296	2L_20808296_DEL [dm3] 2L_20808296_DEL [dm6]	TAAATGCT	T	4.090e^-4	0.992	INTRON CG9328
3R	14344028	3R_14344028_SNP [dm3] 3R_18518306_SNP [dm6]	A	G	4.090e^-4	0.992	INTRON fru
2L	11621354	2L_11621354_SNP [dm3] 2L_11621354_SNP [dm6]	G	T	4.104e^-4	0.992	START_GAINED kek2 UTR_5_PRIME kek2
X	19019994	X_19019994_SNP [dm3] X_19125961_SNP [dm6]	A	G	4.112e^-4	0.992	INTRON tgy
2L	8071926	2L_8071926_SNP [dm3] 2L_8071926_SNP [dm6]	T	A	4.116e^-4	0.992	UTR_3_PRIME MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7332883	2L_7332883_SNP [dm3] 2L_7332883_SNP [dm6]	G	A	4.125e^-4	0.992	UPSTREAM Wnt6 INTERGENIC
3R	9873115	3R_9873115_SNP [dm3] 3R_14047393_SNP [dm6]	G	T	4.128e^-4	0.992	INTERGENIC
3L	5370456	3L_5370456_SNP [dm3] 3L_5377356_SNP [dm6]	G	A	4.128e^-4	0.992	UPSTREAM CR45743 INTERGENIC
2L	334096	2L_334096_SNP [dm3] 2L_334096_SNP [dm6]	G	T	4.131e^-4	0.992	INTRON Plc21C	TF binding site mE1_TFBS_inv
3L	3530823	3L_3530823_SNP [dm3] 3L_3530823_SNP [dm6]	G	C	4.139e^-4	0.992	INTRON Eip63E
3R	10434996	3R_10434996_SNP [dm3] 3R_14609274_SNP [dm6]	A	G	4.145e^-4	0.992	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15054036	2R_15054036_SNP [dm3] 2R_19166531_SNP [dm6]	T	A	4.152e^-4	0.992	INTRON CG10737
3L	6052492	3L_6052492_SNP [dm3] 3L_6059392_SNP [dm6]	T	G	4.164e^-4	0.992	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	19179940	X_19179940_SNP [dm3] X_19285907_SNP [dm6]	G	C	4.169e^-4	0.992	INTRON CG8034	TF binding site mE1_TFBS_HSA
3L	7056905	3L_7056905_INS [dm3] 3L_7063805_INS [dm6]	A	AA	4.171e^-4	0.992	INTRON CG8641
2L	4227661	2L_4227661_SNP [dm3] 2L_4227661_SNP [dm6]	G	C	4.181e^-4	0.992	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	6433636	3R_6433636_SNP [dm3] 3R_10607914_SNP [dm6]	A	T	4.183e^-4	0.992	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20290592	3R_20290592_SNP [dm3] 3R_24464870_SNP [dm6]	G	A	4.185e^-4	0.992	UPSTREAM CR45649 INTERGENIC
3L	18002813	3L_18002813_SNP [dm3] 3L_18009713_SNP [dm6]	T	C	4.202e^-4	0.992	INTRON Eip75B
X	8428934	X_8428934_SNP [dm3] X_8534901_SNP [dm6]	A	T	4.202e^-4	0.992	INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2R	16985859	2R_16985859_SNP [dm3] 2R_21098354_SNP [dm6]	T	C	4.204e^-4	0.992	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9590800	2R_9590800_SNP [dm3] 2R_13703295_SNP [dm6]	T	A	4.207e^-4	0.992	INTRON fas
2L	11826610	2L_11826610_DEL [dm3] 2L_11826610_DEL [dm6]	AA	A	4.207e^-4	0.992	DOWNSTREAM esc INTRON Pde1c
3L	2638632	3L_2638632_SNP [dm3] 3L_2638632_SNP [dm6]	G	A	4.216e^-4	0.992	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6115714	X_6115714_SNP [dm3] X_6221681_SNP [dm6]	C	T	4.223e^-4	0.992	SYNONYMOUS_CODING Efr	TF binding site mE1_TFBS_sens
X	14488531	X_14488531_SNP [dm3] X_14594498_SNP [dm6]	A	C	4.245e^-4	0.992	INTRON CG9413
2R	6570851	2R_6570851_SNP [dm3] 2R_10683346_SNP [dm6]	T	C	4.251e^-4	0.992	INTRON stan	TF binding site BDTNP1_TFBS_dl
2L	1320700	2L_1320700_SNP [dm3] 2L_1320700_SNP [dm6]	A	T	4.252e^-4	0.992	INTERGENIC
X	5532743	X_5532743_SNP [dm3] X_5638710_SNP [dm6]	G	T	4.252e^-4	0.992	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
X	5532784	X_5532784_SNP [dm3] X_5638751_SNP [dm6]	A	G	4.252e^-4	0.992	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
3L	5370464	3L_5370464_SNP [dm3] 3L_5377364_SNP [dm6]	G	A	4.258e^-4	0.992	UPSTREAM CR45743 INTERGENIC
2R	14927904	2R_14927904_SNP [dm3] 2R_19040399_SNP [dm6]	C	T	4.269e^-4	0.992	INTERGENIC
3L	575963	3L_575963_SNP [dm3] 3L_575963_SNP [dm6]	C	T	4.273e^-4	0.992	UTR_3_PRIME hipk
X	8222317	X_8222317_SNP [dm3] X_8328284_SNP [dm6]	T	A	4.282e^-4	0.992	INTRON nAChRalpha3
2R	9540599	2R_9540599_SNP [dm3] 2R_13653094_SNP [dm6]	T	A	4.284e^-4	0.992	INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	3734541	2L_3734541_SNP [dm3] 2L_3734541_SNP [dm6]	A	T	4.293e^-4	0.992	INTRON CG10019
X	20945127	X_20945127_SNP [dm3] X_21074100_SNP [dm6]	A	T	4.293e^-4	0.992	INTRON bves
3L	14629672	3L_14629672_DEL [dm3] 3L_14636572_DEL [dm6]	TCAT	T	4.309e^-4	0.992	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2R	5563785	2R_5563785_SNP [dm3] 2R_9676280_SNP [dm6]	G	T	4.310e^-4	0.992	INTRON Mmp2
X	19501573	X_19501573_SNP [dm3] X_19607540_SNP [dm6]	C	T	4.310e^-4	0.992	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	15591522	3L_15591522_SNP [dm3] 3L_15598422_SNP [dm6]	C	T	4.311e^-4	0.992	INTRON RhoGAP71E
2L	19284551	2L_19284551_SNP [dm3] 2L_19284551_SNP [dm6]	A	G	4.324e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6743280	3R_6743280_SNP [dm3] 3R_10917558_SNP [dm6]	A	G	4.325e^-4	0.992	INTERGENIC
3L	11255969	3L_11255969_SNP [dm3] 3L_11262869_SNP [dm6]	A	G	4.327e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16932131	2R_16932131_DEL [dm3] 2R_21044626_DEL [dm6]	TACAT	T	4.336e^-4	0.992	INTERGENIC
3L	9979045	3L_9979045_SNP [dm3] 3L_9985945_SNP [dm6]	T	C	4.353e^-4	0.992	INTRON dpr6
3R	12311776	3R_12311776_SNP [dm3] 3R_16486054_SNP [dm6]	A	G	4.354e^-4	0.992	INTRON Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18482400	2R_18482400_SNP [dm3] 2R_22594895_SNP [dm6]	A	T	4.355e^-4	0.992	SYNONYMOUS_CODING CG3927	TF binding site mE1_TFBS_inv
3R	14344026	3R_14344026_SNP [dm3] 3R_18518304_SNP [dm6]	A	T	4.357e^-4	0.992	INTRON fru
3R	23060153	3R_23060153_SNP [dm3] 3R_27234431_SNP [dm6]	G	A	4.358e^-4	0.992	SYNONYMOUS_CODING CG31068 INTRON CG31064
2R	15100941	2R_15100941_SNP [dm3] 2R_19213436_SNP [dm6]	A	T	4.363e^-4	0.992	INTRON hppy
2R	15100948	2R_15100948_SNP [dm3] 2R_19213443_SNP [dm6]	T	G	4.363e^-4	0.992	INTRON hppy
3L	3843493	3L_3843493_SNP [dm3] 3L_3843493_SNP [dm6]	T	C	4.363e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14907221	3R_14907221_SNP [dm3] 3R_19081499_SNP [dm6]	A	C	4.365e^-4	0.992	INTRON cdi
2R	16985281	2R_16985281_SNP [dm3] 2R_21097776_SNP [dm6]	G	A	4.370e^-4	0.992	UTR_5_PRIME CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2998619	X_2998619_SNP [dm3] X_3104586_SNP [dm6]	C	G	4.397e^-4	0.992	INTRON kirre
3R	12571124	3R_12571124_SNP [dm3] 3R_16745402_SNP [dm6]	C	T	4.398e^-4	0.992	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7058728	3L_7058728_SNP [dm3] 3L_7065628_SNP [dm6]	C	T	4.399e^-4	0.992	UPSTREAM CG14823 INTRON CG8641
2R	18520139	2R_18520139_SNP [dm3] 2R_22632634_SNP [dm6]	A	T	4.400e^-4	0.992	UTR_3_PRIME CG33143	TF binding site mE1_TFBS_cad
3L	7389604	3L_7389604_SNP [dm3] 3L_7396504_SNP [dm6]	G	A	4.403e^-4	0.992	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
3R	18080203	3R_18080203_SNP [dm3] 3R_22254481_SNP [dm6]	A	G	4.408e^-4	0.992	INTRON SKIP
3L	15943633	3L_15943633_SNP [dm3] 3L_15950533_SNP [dm6]	C	T	4.410e^-4	0.992	INTRON Pka-C3
3L	3046152	3L_3046152_SNP [dm3] 3L_3046152_SNP [dm6]	A	G	4.413e^-4	0.992	SYNONYMOUS_CODING scramb2 UPSTREAM Sk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	18475370	2R_18475370_SNP [dm3] 2R_22587865_SNP [dm6]	G	C	4.416e^-4	0.992	INTRON dnr1
3L	8511374	3L_8511374_SNP [dm3] 3L_8518274_SNP [dm6]	T	C	4.419e^-4	0.992	UTR_3_PRIME CG6765 UPSTREAM GstO3
3L	2427372	3L_2427372_SNP [dm3] 3L_2427372_SNP [dm6]	G	T	4.422e^-4	0.992	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19884789	2R_19884789_SNP [dm3] 2R_23997266_SNP [dm6]	G	C	4.424e^-4	0.992	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1391207	X_1391207_SNP [dm3] X_1497174_SNP [dm6]	G	A	4.439e^-4	0.992	UPSTREAM Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	12312337	3L_12312337_SNP [dm3] 3L_12319237_SNP [dm6]	C	T	4.439e^-4	0.992	INTERGENIC
3L	7057452	3L_7057452_SNP [dm3] 3L_7064352_SNP [dm6]	G	A	4.445e^-4	0.992	INTRON CG8641
2L	12212629	2L_12212629_SNP [dm3] 2L_12212629_SNP [dm6]	T	C	4.456e^-4	0.992	INTRON aret
2L	12212640	2L_12212640_SNP [dm3] 2L_12212640_SNP [dm6]	G	C	4.456e^-4	0.992	INTRON aret
2L	12212647	2L_12212647_SNP [dm3] 2L_12212647_SNP [dm6]	C	A	4.456e^-4	0.992	INTRON aret
2L	4749122	2L_4749122_SNP [dm3] 2L_4749122_SNP [dm6]	C	A	4.457e^-4	0.992	INTRON CG15630
3L	4516597	3L_4516597_SNP [dm3] 3L_4516597_SNP [dm6]	G	C	4.465e^-4	0.992	INTRON Tie	TF binding site mE1_TFBS_inv
3L	6378281	3L_6378281_SNP [dm3] 3L_6385181_SNP [dm6]	C	A	4.472e^-4	0.992	INTERGENIC
3L	17128751	3L_17128751_SNP [dm3] 3L_17135651_SNP [dm6]	C	T	4.482e^-4	0.992	INTRON Rbp6
2L	3761029	2L_3761029_DEL [dm3] 2L_3761029_DEL [dm6]	ACAATA	A	4.488e^-4	0.992	INTRON CG43707	TF binding site mE1_TFBS_chinmo
3R	4153053	3R_4153053_SNP [dm3] 3R_8327331_SNP [dm6]	A	G	4.489e^-4	0.992	INTRON Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3196037	3L_3196037_SNP [dm3] 3L_3196037_SNP [dm6]	T	C	4.493e^-4	0.992	SYNONYMOUS_CODING Hsp83	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2031993	3L_2031993_DEL [dm3] 3L_2031993_DEL [dm6]	CGCC	C	4.494e^-4	0.992	INTERGENIC
3R	6433822	3R_6433822_SNP [dm3] 3R_10608100_SNP [dm6]	T	C	4.495e^-4	0.992	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1321998	3L_1321998_SNP [dm3] 3L_1321998_SNP [dm6]	G	C	4.496e^-4	0.992	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
3L	17135096	3L_17135096_SNP [dm3] 3L_17141996_SNP [dm6]	C	A	4.497e^-4	0.992	INTRON Rbp6
2L	7332914	2L_7332914_SNP [dm3] 2L_7332914_SNP [dm6]	T	A	4.500e^-4	0.992	UPSTREAM Wnt6 INTERGENIC
3L	918867	3L_918867_DEL [dm3] 3L_918867_DEL [dm6]	GCATAT	G	4.502e^-4	0.992	INTRON Glut1
2L	4826801	2L_4826801_SNP [dm3] 2L_4826801_SNP [dm6]	G	A	4.504e^-4	0.992	SYNONYMOUS_CODING CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19354026	X_19354026_SNP [dm3] X_19459993_SNP [dm6]	T	A	4.513e^-4	0.992	INTRON kek5
2L	9502254	2L_9502254_SNP [dm3] 2L_9502254_SNP [dm6]	G	A	4.513e^-4	0.992	INTRON CG33298
2L	3125997	2L_3125997_SNP [dm3] 2L_3125997_SNP [dm6]	A	T	4.524e^-4	0.992	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14838807	2R_14838807_SNP [dm3] 2R_18951302_SNP [dm6]	G	C	4.537e^-4	0.992	INTRON sano
X	6806471	X_6806471_SNP [dm3] X_6912438_SNP [dm6]	G	A	4.541e^-4	0.992	INTRON CG14431
2L	5495405	2L_5495405_SNP [dm3] 2L_5495405_SNP [dm6]	G	A	4.548e^-4	0.992	INTERGENIC
3L	1254879	3L_1254879_SNP [dm3] 3L_1254879_SNP [dm6]	C	T	4.556e^-4	0.992	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12312333	3L_12312333_SNP [dm3] 3L_12319233_SNP [dm6]	T	A	4.556e^-4	0.992	INTERGENIC
3R	21236580	3R_21236580_SNP [dm3] 3R_25410858_SNP [dm6]	C	T	4.558e^-4	0.992	INTRON Fur1
3L	3052492	3L_3052492_SNP [dm3] 3L_3052492_SNP [dm6]	T	G	4.559e^-4	0.992	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15542367	X_15542367_SNP [dm3] X_15648334_SNP [dm6]	T	A	4.561e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12299539	3L_12299539_SNP [dm3] 3L_12306439_SNP [dm6]	G	C	4.566e^-4	0.992	INTERGENIC
2L	16439806	2L_16439806_SNP [dm3] 2L_16439806_SNP [dm6]	A	G	4.568e^-4	0.992	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	4293452	3L_4293452_SNP [dm3] 3L_4293452_SNP [dm6]	A	G	4.573e^-4	0.992	DOWNSTREAM dyl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20623731	2R_20623731_SNP [dm3] 2R_24736208_SNP [dm6]	T	A	4.575e^-4	0.992	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	859112	2L_859112_SNP [dm3] 2L_859112_SNP [dm6]	C	T	4.578e^-4	0.992	INTERGENIC
3L	6698058	3L_6698058_SNP [dm3] 3L_6704958_SNP [dm6]	A	T	4.581e^-4	0.992	UTR_5_PRIME CG8519
2R	18739948	2R_18739948_SNP [dm3] 2R_22852425_SNP [dm6]	A	G	4.598e^-4	0.992	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_chinmo
2L	15322128	2L_15322128_SNP [dm3] 2L_15322128_SNP [dm6]	A	G	4.611e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5542111	2L_5542111_SNP [dm3] 2L_5542111_SNP [dm6]	G	A	4.615e^-4	0.992	UPSTREAM Lam & 1 other INTRON Hel25E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	12657080	2L_12657080_SNP [dm3] 2L_12657080_SNP [dm6]	A	T	4.619e^-4	0.992	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9576021	2L_9576021_SNP [dm3] 2L_9576021_SNP [dm6]	G	A	4.620e^-4	0.992	SYNONYMOUS_CODING Mtpalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
X	5532733	X_5532733_SNP [dm3] X_5638700_SNP [dm6]	T	G	4.637e^-4	0.992	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
3R	9288893	3R_9288893_SNP [dm3] 3R_13463171_SNP [dm6]	C	T	4.638e^-4	0.992	UTR_3_PRIME CG14372 INTRON CR17025	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19510229	X_19510229_SNP [dm3] X_19616196_SNP [dm6]	G	T	4.640e^-4	0.992	UTR_5_PRIME CG14210 DOWNSTREAM Shawn & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	13162818	X_13162818_SNP [dm3] X_13268785_SNP [dm6]	C	T	4.643e^-4	0.992	SYNONYMOUS_CODING HDAC4 INTRON HDAC4
3L	10835024	3L_10835024_SNP [dm3] 3L_10841924_SNP [dm6]	T	C	4.644e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	6191761	X_6191761_SNP [dm3] X_6297728_SNP [dm6]	G	A	4.668e^-4	0.992	SYNONYMOUS_CODING CG3815	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12476537	2R_12476537_SNP [dm3] 2R_16589032_SNP [dm6]	G	A	4.674e^-4	0.992	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18475359	2R_18475359_SNP [dm3] 2R_22587854_SNP [dm6]	C	T	4.681e^-4	0.992	INTRON dnr1
X	6557459	X_6557459_SNP [dm3] X_6663426_SNP [dm6]	A	C	4.701e^-4	0.992	INTRON Ctr1A
3R	6526051	3R_6526051_SNP [dm3] 3R_10700329_SNP [dm6]	G	A	4.719e^-4	0.992	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9250704	2L_9250704_SNP [dm3] 2L_9250704_SNP [dm6]	C	T	4.723e^-4	0.992	DOWNSTREAM CR43734 & 2 others INTRON aust	TF binding site mE1_TFBS_HSA
X	16085083	X_16085083_SNP [dm3] X_16191050_SNP [dm6]	T	A	4.724e^-4	0.992	DOWNSTREAM mir-985 INTERGENIC
3R	10194366	3R_10194366_SNP [dm3] 3R_14368644_SNP [dm6]	G	A	4.725e^-4	0.992	INTRON NK7.1	TF binding site BDTNP1_TFBS_prd
2L	307471	2L_307471_SNP [dm3] 2L_307471_SNP [dm6]	T	C	4.726e^-4	0.992	INTRON Plc21C
3L	15189412	3L_15189412_SNP [dm3] 3L_15196312_SNP [dm6]	T	G	4.729e^-4	0.992	INTERGENIC
2L	13497051	2L_13497051_SNP [dm3] 2L_13497051_SNP [dm6]	C	A	4.734e^-4	0.992	INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13496986	2L_13496986_SNP [dm3] 2L_13496986_SNP [dm6]	C	T	4.737e^-4	0.992	INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12780311	2L_12780311_DEL [dm3] 2L_12780311_DEL [dm6]	TTTATTTCAT	A	4.744e^-4	0.992	INTERGENIC
3L	3122143	3L_3122143_SNP [dm3] 3L_3122143_SNP [dm6]	A	T	4.749e^-4	0.992	UPSTREAM tRNA:CR32273 INTRON prominin-like
X	6962754	X_6962754_SNP [dm3] X_7068721_SNP [dm6]	T	A	4.749e^-4	0.992	UPSTREAM CG4607 INTERGENIC	TF binding site mE1_TFBS_inv
3L	967546	3L_967546_SNP [dm3] 3L_967546_SNP [dm6]	C	T	4.751e^-4	0.992	INTRON Glut1
3R	6794288	3R_6794288_SNP [dm3] 3R_10968566_SNP [dm6]	T	A	4.754e^-4	0.992	INTERGENIC
2R	14854101	2R_14854101_SNP [dm3] 2R_18966596_SNP [dm6]	T	G	4.760e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14343910	3R_14343910_SNP [dm3] 3R_18518188_SNP [dm6]	A	G	4.764e^-4	0.992	INTRON fru
3R	14652647	3R_14652647_SNP [dm3] 3R_18826925_SNP [dm6]	C	T	4.765e^-4	0.992	INTRON CG18208
3L	12959258	3L_12959258_SNP [dm3] 3L_12966158_SNP [dm6]	C	T	4.766e^-4	0.992	UPSTREAM Or69a INTRON Or69a
2L	2015441	2L_2015441_SNP [dm3] 2L_2015441_SNP [dm6]	G	A	4.769e^-4	0.992	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
2L	576772	2L_576772_SNP [dm3] 2L_576772_SNP [dm6]	G	T	4.770e^-4	0.992	UTR_5_PRIME Ptth UPSTREAM Pph13 & 1 other	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6806467	X_6806467_SNP [dm3] X_6912434_SNP [dm6]	T	C	4.791e^-4	0.992	INTRON CG14431
2R	5714087	2R_5714087_SNP [dm3] 2R_9826582_SNP [dm6]	A	C	4.827e^-4	0.992	SPLICE_SITE_DONOR dila NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22033007	X_22033007_SNP [dm3] X_22631171_SNP [dm6]	C	T	4.845e^-4	0.992	INTRON Cda4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3919481	X_3919481_SNP [dm3] X_4025448_SNP [dm6]	C	T	4.848e^-4	0.992	INTERGENIC
3L	6052459	3L_6052459_SNP [dm3] 3L_6059359_SNP [dm6]	T	C	4.848e^-4	0.992	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	19779272	2R_19779272_SNP [dm3] 2R_23891749_SNP [dm6]	T	C	4.849e^-4	0.992	SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
2L	12159409	2L_12159409_SNP [dm3] 2L_12159409_SNP [dm6]	T	A	4.849e^-4	0.992	INTRON CG31760	TF binding site BDTNP1_TFBS_dl
3R	12702896	3R_12702896_SNP [dm3] 3R_16877174_SNP [dm6]	T	A	4.854e^-4	0.992	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5101797	2L_5101797_SNP [dm3] 2L_5101797_SNP [dm6]	T	G	4.865e^-4	0.992	INTRON Msp300
3L	9561655	3L_9561655_INS [dm3] 3L_9568555_INS [dm6]	G	GG	4.866e^-4	0.992	INTRON CG42673
3L	4162283	3L_4162283_SNP [dm3] 3L_4162283_SNP [dm6]	C	T	4.867e^-4	0.992	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16277874	X_16277874_SNP [dm3] X_16383841_SNP [dm6]	G	A	4.868e^-4	0.992	UPSTREAM CG9992 INTRON CG9992	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	24029846	3R_24029846_SNP [dm3] 3R_28204124_SNP [dm6]	A	G	4.872e^-4	0.992	INTRON CG34354
3L	8610872	3L_8610872_SNP [dm3] 3L_8617772_SNP [dm6]	G	A	4.878e^-4	0.992	SYNONYMOUS_CODING S-Lap1 DOWNSTREAM CG6282
X	13340857	X_13340857_DEL [dm3] X_13446824_DEL [dm6]	TA	T	4.880e^-4	0.992	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6196117	3R_6196117_SNP [dm3] 3R_10370395_SNP [dm6]	C	T	4.886e^-4	0.992	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5659656	2L_5659656_SNP [dm3] 2L_5659656_SNP [dm6]	G	A	4.898e^-4	0.992	INTERGENIC
3L	18002021	3L_18002021_SNP [dm3] 3L_18008921_SNP [dm6]	G	T	4.910e^-4	0.992	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15542459	X_15542459_SNP [dm3] X_15648426_SNP [dm6]	G	T	4.924e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	949350	2L_949350_SNP [dm3] 2L_949350_SNP [dm6]	G	C	4.933e^-4	0.992	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	1996356	2R_1996356_SNP [dm3] 2R_6108851_SNP [dm6]	A	C	4.939e^-4	0.992	INTRON EcR
3L	906419	3L_906419_SNP [dm3] 3L_906419_SNP [dm6]	T	A	4.942e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16427414	3L_16427414_DEL [dm3] 3L_16434314_DEL [dm6]	AC	A	4.944e^-4	0.992	INTRON CG33158 & 1 other
X	4329521	X_4329521_SNP [dm3] X_4435488_SNP [dm6]	T	C	4.946e^-4	0.992	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	11108332	3L_11108332_SNP [dm3] 3L_11115232_SNP [dm6]	C	T	4.953e^-4	0.992	SYNONYMOUS_CODING fd68A
2R	13099944	2R_13099944_SNP [dm3] 2R_17212439_SNP [dm6]	C	G	4.962e^-4	0.992	INTERGENIC
X	14225719	X_14225719_SNP [dm3] X_14331686_SNP [dm6]	C	T	4.966e^-4	0.992	INTRON dpr8
3L	7055218	3L_7055218_SNP [dm3] 3L_7062118_SNP [dm6]	A	C	4.971e^-4	0.992	INTRON CG8641
3L	17403279	3L_17403279_SNP [dm3] 3L_17410179_SNP [dm6]	T	A	4.973e^-4	0.992	INTRON blot
2R	3816422	2R_3816422_SNP [dm3] 2R_7928917_SNP [dm6]	C	A	4.974e^-4	0.992	SYNONYMOUS_CODING CG8791 DOWNSTREAM CG30381	TF binding site mE1_TFBS_cad
2R	1327510	2R_1327510_SNP [dm3] 2R_5440005_SNP [dm6]	A	G	4.976e^-4	0.992	INTRON laccase2
2L	9582828	2L_9582828_SNP [dm3] 2L_9582828_SNP [dm6]	G	A	4.982e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	6755931	3L_6755931_SNP [dm3] 3L_6762831_SNP [dm6]	A	G	4.984e^-4	0.992	INTRON CG32392
X	4909289	X_4909289_SNP [dm3] X_5015256_SNP [dm6]	A	T	4.986e^-4	0.992	INTRON CR44833
2L	6960775	2L_6960775_SNP [dm3] 2L_6960775_SNP [dm6]	A	C	4.987e^-4	0.992	NON_SYNONYMOUS_CODING CG10399 UPSTREAM Atac1 DOWNSTREAM sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10406329	X_10406329_SNP [dm3] X_10512296_SNP [dm6]	A	G	4.995e^-4	0.992	INTRON spri
3R	12741350	3R_12741350_SNP [dm3] 3R_16915628_SNP [dm6]	A	T	4.995e^-4	0.992	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21815150	3R_21815150_SNP [dm3] 3R_25989428_SNP [dm6]	C	T	4.996e^-4	0.992	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	8430247	X_8430247_SNP [dm3] X_8536214_SNP [dm6]	A	T	4.998e^-4	0.992	INTRON Nrg
2L	2110243	2L_2110243_SNP [dm3] 2L_2110243_SNP [dm6]	T	C	5.007e^-4	0.992	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	2282419	3L_2282419_SNP [dm3] 3L_2282419_SNP [dm6]	A	T	5.009e^-4	0.992	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12960462	3L_12960462_SNP [dm3] 3L_12967362_SNP [dm6]	G	T	5.024e^-4	0.992	SYNONYMOUS_CODING Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12980604	X_12980604_SNP [dm3] X_13086571_SNP [dm6]	G	A	5.025e^-4	0.992	SYNONYMOUS_CODING hep	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10769631	3L_10769631_SNP [dm3] 3L_10776531_SNP [dm6]	C	A	5.031e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8154092	2L_8154092_DEL [dm3] 2L_8154092_DEL [dm6]	AA	A	5.036e^-4	0.992	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16594375	2R_16594375_SNP [dm3] 2R_20706870_SNP [dm6]	G	A	5.059e^-4	0.992	INTRON dpr	TF binding site mE1_TFBS_chinmo
3L	12423415	3L_12423415_SNP [dm3] 3L_12430315_SNP [dm6]	A	G	5.062e^-4	0.992	INTRON toe
X	19508816	X_19508816_SNP [dm3] X_19614783_SNP [dm6]	G	A	5.066e^-4	0.992	SYNONYMOUS_CODING Shawn UTR_3_PRIME Tyler	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21498380	X_21498380_DEL [dm3] X_21627353_DEL [dm6]	GAATGTTAATT...	G	5.066e^-4	0.992	INTRON DIP1	transposable element FlyBase
3R	21817101	3R_21817101_SNP [dm3] 3R_25991379_SNP [dm6]	C	T	5.068e^-4	0.992	SPLICE_SITE_REGION Nf1 INTRON Nf1
2L	4166188	2L_4166188_SNP [dm3] 2L_4166188_SNP [dm6]	T	G	5.070e^-4	0.992	UPSTREAM Or24a INTERGENIC
3L	9806110	3L_9806110_SNP [dm3] 3L_9813010_SNP [dm6]	G	C	5.072e^-4	0.992	UPSTREAM CG43897 INTERGENIC
3L	21728163	3L_21728163_SNP [dm3] 3L_21735063_SNP [dm6]	A	T	5.073e^-4	0.992	UPSTREAM CR43888 DOWNSTREAM CG14573 INTERGENIC
3L	5231963	3L_5231963_SNP [dm3] 3L_5238863_SNP [dm6]	A	C	5.083e^-4	0.992	INTRON shep
3L	12053409	3L_12053409_SNP [dm3] 3L_12060309_SNP [dm6]	G	A	5.094e^-4	0.992	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18060301	3L_18060301_SNP [dm3] 3L_18067201_SNP [dm6]	C	G	5.104e^-4	0.992	INTERGENIC
3R	15871649	3R_15871649_DEL [dm3] 3R_20045927_DEL [dm6]	GA	G	5.110e^-4	0.992	DOWNSTREAM Indy-2 INTRON CG17193 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6848157	3L_6848157_INS [dm3] 3L_6855057_INS [dm6]	C	CCC	5.119e^-4	0.992	INTERGENIC
3L	18839807	3L_18839807_SNP [dm3] 3L_18846707_SNP [dm6]	G	T	5.120e^-4	0.992	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	439236	2L_439236_SNP [dm3] 2L_439236_SNP [dm6]	T	C	5.123e^-4	0.992	UPSTREAM CR43717 INTRON ex
3L	5847081	3L_5847081_SNP [dm3] 3L_5853981_SNP [dm6]	G	T	5.125e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18534771	3R_18534771_SNP [dm3] 3R_22709049_SNP [dm6]	G	A	5.127e^-4	0.992	SYNONYMOUS_CODING CG4907	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7058008	3L_7058008_SNP [dm3] 3L_7064908_SNP [dm6]	A	T	5.146e^-4	0.992	INTRON CG8641
2L	10053578	2L_10053578_SNP [dm3] 2L_10053578_SNP [dm6]	C	T	5.147e^-4	0.992	UPSTREAM CR44875 & 1 other INTERGENIC
3R	21826979	3R_21826979_SNP [dm3] 3R_26001257_SNP [dm6]	C	T	5.147e^-4	0.992	DOWNSTREAM E_spl_mgamma-HLH EXON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	333077	2L_333077_SNP [dm3] 2L_333077_SNP [dm6]	A	C	5.148e^-4	0.992	UPSTREAM CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5065776	2L_5065776_SNP [dm3] 2L_5065776_SNP [dm6]	A	G	5.149e^-4	0.992	UPSTREAM qtc INTRON qtc
3R	20394873	3R_20394873_SNP [dm3] 3R_24569151_SNP [dm6]	T	C	5.179e^-4	0.992	INTRON CG13624	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8876852	2L_8876852_SNP [dm3] 2L_8876852_SNP [dm6]	A	T	5.206e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15944775	2R_15944775_SNP [dm3] 2R_20057270_SNP [dm6]	C	T	5.208e^-4	0.992	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2681110	3L_2681110_SNP [dm3] 3L_2681110_SNP [dm6]	C	T	5.212e^-4	0.992	INTRON Fife
3R	25569856	3R_25569856_SNP [dm3] 3R_29744134_SNP [dm6]	A	T	5.219e^-4	0.992	INTRON CG7609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11536795	2R_11536795_SNP [dm3] 2R_15649290_SNP [dm6]	A	T	5.225e^-4	0.992	INTRON CG42524	TF binding site mE1_TFBS_Trl
2L	8628504	2L_8628504_SNP [dm3] 2L_8628504_SNP [dm6]	C	G	5.230e^-4	0.992	INTRON Sema-1a
3L	16807914	3L_16807914_SNP [dm3] 3L_16814814_SNP [dm6]	C	T	5.236e^-4	0.992	INTRON nudC & 1 other
2L	5585454	2L_5585454_SNP [dm3] 2L_5585454_SNP [dm6]	A	T	5.239e^-4	0.992	INTERGENIC
2L	13496964	2L_13496964_DEL [dm3] 2L_13496964_DEL [dm6]	ACCTTTA	A	5.241e^-4	0.992	INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17128645	3L_17128645_SNP [dm3] 3L_17135545_SNP [dm6]	T	C	5.252e^-4	0.992	INTRON Rbp6
2L	13969922	2L_13969922_SNP [dm3] 2L_13969922_SNP [dm6]	G	A	5.255e^-4	0.992	UTR_5_PRIME NimB4 UPSTREAM NimB5
2L	12725183	2L_12725183_SNP [dm3] 2L_12725183_SNP [dm6]	A	T	5.255e^-4	0.992	INTRON MRP
2L	14111844	2L_14111844_SNP [dm3] 2L_14111844_SNP [dm6]	A	C	5.275e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3180050	2L_3180050_SNP [dm3] 2L_3180050_SNP [dm6]	C	A	5.286e^-4	0.992	INTRON CG34393
X	15560726	X_15560726_INS [dm3] X_15666693_INS [dm6]	A	ATCA	5.287e^-4	0.992	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
X	20321101	X_20321101_SNP [dm3] X_20450074_SNP [dm6]	A	C	5.300e^-4	0.992	INTRON CG32506
X	20406173	X_20406173_SNP [dm3] X_20535146_SNP [dm6]	T	C	5.307e^-4	0.992	INTERGENIC
2L	12453488	2L_12453488_SNP [dm3] 2L_12453488_SNP [dm6]	A	T	5.334e^-4	0.992	UPSTREAM CR17024 & 1 other INTERGENIC
3R	17316874	3R_17316874_SNP [dm3] 3R_21491152_SNP [dm6]	C	G	5.363e^-4	0.992	INTERGENIC
2L	1444401	2L_1444401_SNP [dm3] 2L_1444401_SNP [dm6]	C	A	5.363e^-4	0.992	DOWNSTREAM CG43402 INTERGENIC
2L	3159383	2L_3159383_SNP [dm3] 2L_3159383_SNP [dm6]	A	G	5.364e^-4	0.992	UPSTREAM gkt INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16983536	2R_16983536_SNP [dm3] 2R_21096031_SNP [dm6]	C	T	5.374e^-4	0.992	UTR_3_PRIME CG4038 INTRON CG34396
3L	12959130	3L_12959130_SNP [dm3] 3L_12966030_SNP [dm6]	G	T	5.376e^-4	0.992	UPSTREAM Or69a INTRON Or69a
2L	4168555	2L_4168555_SNP [dm3] 2L_4168555_SNP [dm6]	A	C	5.385e^-4	0.992	INTERGENIC
X	13858169	X_13858169_SNP [dm3] X_13964136_SNP [dm6]	T	G	5.386e^-4	0.992	INTRON mamo	TF binding site BDTNP1_TFBS_dl
X	5298204	X_5298204_SNP [dm3] X_5404171_SNP [dm6]	A	G	5.399e^-4	0.992	UTR_3_PRIME SK
3L	10927287	3L_10927287_SNP [dm3] 3L_10934187_SNP [dm6]	T	A	5.402e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25576423	3R_25576423_SNP [dm3] 3R_29750701_SNP [dm6]	T	G	5.403e^-4	0.992	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7020255	2R_7020255_SNP [dm3] 2R_11132750_SNP [dm6]	T	C	5.411e^-4	0.992	INTERGENIC
2L	5898958	2L_5898958_DEL [dm3] 2L_5898958_DEL [dm6]	GAATGTAG	G	5.412e^-4	0.992	DOWNSTREAM CR44579 INTERGENIC
2L	1321136	2L_1321136_SNP [dm3] 2L_1321136_SNP [dm6]	C	A	5.430e^-4	0.992	INTERGENIC
3L	11103075	3L_11103075_SNP [dm3] 3L_11109975_SNP [dm6]	C	T	5.430e^-4	0.992	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19503318	X_19503318_SNP [dm3] X_19609285_SNP [dm6]	T	C	5.435e^-4	0.992	UPSTREAM CG14207 INTRON CG14207	TF binding site BDTNP1_TFBS_twi
3L	1440072	3L_1440072_SNP [dm3] 3L_1440072_SNP [dm6]	A	G	5.441e^-4	0.992	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	2683052	3L_2683052_SNP [dm3] 3L_2683052_SNP [dm6]	G	A	5.462e^-4	0.992	INTRON Fife
3L	18004394	3L_18004394_SNP [dm3] 3L_18011294_SNP [dm6]	C	A	5.474e^-4	0.992	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6054673	3L_6054673_SNP [dm3] 3L_6061573_SNP [dm6]	A	G	5.475e^-4	0.992	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
2R	14387286	2R_14387286_SNP [dm3] 2R_18499781_SNP [dm6]	C	T	5.483e^-4	0.992	INTERGENIC
X	6962746	X_6962746_SNP [dm3] X_7068713_SNP [dm6]	G	T	5.489e^-4	0.992	UPSTREAM CG4607 INTERGENIC	TF binding site mE1_TFBS_inv
X	12749752	X_12749752_SNP [dm3] X_12855719_SNP [dm6]	T	C	5.492e^-4	0.992	UTR_3_PRIME CG4661 INTRON Pde9
3R	20606719	3R_20606719_SNP [dm3] 3R_24780997_SNP [dm6]	G	C	5.493e^-4	0.992	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	10769677	3L_10769677_SNP [dm3] 3L_10776577_SNP [dm6]	A	G	5.498e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6794600	2L_6794600_SNP [dm3] 2L_6794600_SNP [dm6]	A	C	5.499e^-4	0.992	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7057232	3L_7057232_SNP [dm3] 3L_7064132_SNP [dm6]	C	G	5.508e^-4	0.992	INTRON CG8641
3L	7057882	3L_7057882_SNP [dm3] 3L_7064782_SNP [dm6]	G	T	5.508e^-4	0.992	INTRON CG8641
2L	18995251	2L_18995251_SNP [dm3] 2L_18995251_SNP [dm6]	A	G	5.516e^-4	0.992	INTRON CG10650
X	13697509	X_13697509_SNP [dm3] X_13803476_SNP [dm6]	G	A	5.517e^-4	0.992	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
2L	5898996	2L_5898996_SNP [dm3] 2L_5898996_SNP [dm6]	T	G	5.520e^-4	0.992	DOWNSTREAM CR44579 INTERGENIC
X	2669229	X_2669229_SNP [dm3] X_2775196_SNP [dm6]	T	A	5.529e^-4	0.992	INTRON kirre
2R	16363033	2R_16363033_SNP [dm3] 2R_20475528_SNP [dm6]	C	G	5.548e^-4	0.992	INTRON CG12484
X	1026746	X_1026746_SNP [dm3] X_1132713_SNP [dm6]	A	G	5.551e^-4	0.992	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14344101	3R_14344101_SNP [dm3] 3R_18518379_SNP [dm6]	T	A	5.565e^-4	0.992	INTRON fru
3R	22268091	3R_22268091_SNP [dm3] 3R_26442369_SNP [dm6]	G	C	5.576e^-4	0.992	INTRON tx
3L	2663321	3L_2663321_SNP [dm3] 3L_2663321_SNP [dm6]	T	G	5.587e^-4	0.992	SPLICE_SITE_REGION CG33234 INTRON Fife & 1 other
X	22032982	X_22032982_SNP [dm3] X_22631146_SNP [dm6]	G	C	5.594e^-4	0.992	INTRON Cda4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13361822	3R_13361822_SNP [dm3] 3R_17536100_SNP [dm6]	T	C	5.595e^-4	0.992	SYNONYMOUS_CODING P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882
2R	16136853	2R_16136853_SNP [dm3] 2R_20249348_SNP [dm6]	C	G	5.600e^-4	0.992	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad
2L	289841	2L_289841_SNP [dm3] 2L_289841_SNP [dm6]	C	A	5.600e^-4	0.992	UPSTREAM Amnionless INTRON CG3625
3R	23450597	3R_23450597_SNP [dm3] 3R_27624875_SNP [dm6]	C	T	5.600e^-4	0.992	INTRON Tusp & 1 other
3L	9025080	3L_9025080_SNP [dm3] 3L_9031980_SNP [dm6]	C	T	5.602e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17561025	2R_17561025_SNP [dm3] 2R_21673520_SNP [dm6]	A	G	5.614e^-4	0.992	DOWNSTREAM CG15676 INTERGENIC
2R	1309778	2R_1309778_SNP [dm3] 2R_5422273_SNP [dm6]	T	C	5.615e^-4	0.992	INTRON laccase2
3L	3664434	3L_3664434_INS [dm3] 3L_3664434_INS [dm6]	A	AA	5.617e^-4	0.992	INTERGENIC
3L	10219666	3L_10219666_SNP [dm3] 3L_10226566_SNP [dm6]	T	A	5.627e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12598106	2R_12598106_SNP [dm3] 2R_16710601_SNP [dm6]	T	C	5.631e^-4	0.992	INTRON CG30463
3L	10661758	3L_10661758_SNP [dm3] 3L_10668658_SNP [dm6]	G	A	5.639e^-4	0.992	INTRON simj	TF binding site BDTNP1_TFBS_dl
3R	24205346	3R_24205346_SNP [dm3] 3R_28379624_SNP [dm6]	A	T	5.641e^-4	0.992	INTERGENIC
2L	5647795	2L_5647795_DEL [dm3] 2L_5647795_DEL [dm6]	TT	T	5.649e^-4	0.992	INTRON CG31646
3L	14179588	3L_14179588_SNP [dm3] 3L_14186488_SNP [dm6]	T	C	5.653e^-4	0.992	SYNONYMOUS_CODING nan	TF binding site mE1_TFBS_cad
3L	12991937	3L_12991937_SNP [dm3] 3L_12998837_SNP [dm6]	G	C	5.657e^-4	0.992	INTERGENIC
2R	18172998	2R_18172998_SNP [dm3] 2R_22285493_SNP [dm6]	T	C	5.662e^-4	0.992	UTR_3_PRIME dve	TF binding site mE1_TFBS_HSA
3L	4979072	3L_4979072_INS [dm3] 3L_4979072_INS [dm6]	A	AA	5.687e^-4	0.992	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	21497999	X_21497999_SNP [dm3] X_21626972_SNP [dm6]	A	G	5.688e^-4	0.992	INTRON DIP1	transposable element FlyBase
3L	8065265	3L_8065265_SNP [dm3] 3L_8072165_SNP [dm6]	A	T	5.703e^-4	0.992	SYNONYMOUS_CODING Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18003889	3L_18003889_SNP [dm3] 3L_18010789_SNP [dm6]	C	A	5.706e^-4	0.992	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	20327473	X_20327473_SNP [dm3] X_20456446_SNP [dm6]	C	T	5.707e^-4	0.992	INTRON CG32506
3R	14227845	3R_14227845_SNP [dm3] 3R_18402123_SNP [dm6]	T	G	5.708e^-4	0.992	SYNONYMOUS_CODING CG12333 UPSTREAM koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4925982	2R_4925982_SNP [dm3] 2R_9038477_SNP [dm6]	C	T	5.711e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	6962651	X_6962651_SNP [dm3] X_7068618_SNP [dm6]	T	G	5.711e^-4	0.992	UPSTREAM CG4607 INTERGENIC
3L	1746115	3L_1746115_SNP [dm3] 3L_1746115_SNP [dm6]	C	T	5.712e^-4	0.992	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	19640955	2R_19640955_SNP [dm3] 2R_23753432_SNP [dm6]	T	C	5.721e^-4	0.992	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1666845	2R_1666845_SNP [dm3] 2R_5779340_SNP [dm6]	G	T	5.722e^-4	0.992	INTRON ZnT41F
X	19489470	X_19489470_SNP [dm3] X_19595437_SNP [dm6]	G	A	5.722e^-4	0.992	UTR_3_PRIME CG14205
3R	21815312	3R_21815312_SNP [dm3] 3R_25989590_SNP [dm6]	T	C	5.723e^-4	0.992	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	19498624	X_19498624_INS [dm3] X_19604591_INS [dm6]	A	ATACTCA	5.724e^-4	0.992	UPSTREAM CG14207 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9851153	2L_9851153_SNP [dm3] 2L_9851153_SNP [dm6]	A	G	5.730e^-4	0.992	INTRON nAChRalpha6
X	20953772	X_20953772_SNP [dm3] X_21082745_SNP [dm6]	T	A	5.730e^-4	0.992	DOWNSTREAM bves INTERGENIC
2L	1714490	2L_1714490_SNP [dm3] 2L_1714490_SNP [dm6]	T	G	5.739e^-4	0.992	INTRON frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18002865	3L_18002865_SNP [dm3] 3L_18009765_SNP [dm6]	G	A	5.754e^-4	0.992	INTRON Eip75B
X	13345562	X_13345562_SNP [dm3] X_13451529_SNP [dm6]	C	T	5.757e^-4	0.992	INTRON Neto	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12031507	X_12031507_SNP [dm3] X_12137474_SNP [dm6]	C	T	5.759e^-4	0.992	INTRON Ten-a
3L	3842053	3L_3842053_SNP [dm3] 3L_3842053_SNP [dm6]	G	A	5.763e^-4	0.992	UTR_3_PRIME enc DOWNSTREAM enc
2R	1237048	2R_1237048_DEL [dm3] 2R_5349543_DEL [dm6]	AGAAAAATGTGGTCTATTTA...	A	5.765e^-4	0.992	UPSTREAM CG10395 INTERGENIC	transposable element FlyBase
X	4368186	X_4368186_SNP [dm3] X_4474153_SNP [dm6]	G	T	5.778e^-4	0.992	INTRON bi & 1 other

By genomic position
Variant impact
Gene name

mn_Glycerol_HighDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results