DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.288e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.08418

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1861 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11508784	3L_11508784_SNP [dm3] 3L_11515684_SNP [dm6]	C	A	9.554e^-8	0.179	INTRON CG7512
3L	11509003	3L_11509003_SNP [dm3] 3L_11515903_SNP [dm6]	A	C	3.796e^-7	0.299	INTRON CG7512
X	8927791	X_8927791_SNP [dm3] X_9033758_SNP [dm6]	A	G	5.798e^-7	0.299	INTRON CR43836 & 1 other
X	8927781	X_8927781_SNP [dm3] X_9033748_SNP [dm6]	T	A	1.180e^-6	0.299	INTRON CR43836 & 1 other
3L	11508520	3L_11508520_SNP [dm3] 3L_11515420_SNP [dm6]	T	C	1.284e^-6	0.299	INTRON CG7512
X	8927813	X_8927813_SNP [dm3] X_9033780_SNP [dm6]	A	C	1.298e^-6	0.299	INTRON CR43836 & 1 other
3L	11508979	3L_11508979_SNP [dm3] 3L_11515879_SNP [dm6]	G	A	1.309e^-6	0.299	INTRON CG7512
3L	11508999	3L_11508999_SNP [dm3] 3L_11515899_SNP [dm6]	C	G	1.338e^-6	0.299	INTRON CG7512
X	8927776	X_8927776_SNP [dm3] X_9033743_SNP [dm6]	G	T	1.436e^-6	0.299	INTRON CR43836 & 1 other
2L	307423	2L_307423_SNP [dm3] 2L_307423_SNP [dm6]	A	G	1.764e^-6	0.311	INTRON Plc21C	TF binding site mE1_TFBS_Trl
2R	13843155	2R_13843155_SNP [dm3] 2R_17955650_SNP [dm6]	C	T	1.826e^-6	0.311	NON_SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
X	12653734	X_12653734_SNP [dm3] X_12759701_SNP [dm6]	T	A	2.195e^-6	0.343	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
X	8927745	X_8927745_DEL [dm3] X_9033712_DEL [dm6]	TTTTTCC	T	2.712e^-6	0.365	INTRON CR43836 & 1 other
2R	16931871	2R_16931871_SNP [dm3] 2R_21044366_SNP [dm6]	T	C	2.817e^-6	0.365	INTERGENIC
2R	5217280	2R_5217280_SNP [dm3] 2R_9329775_SNP [dm6]	T	C	3.280e^-6	0.365	INTRON CG13954 & 1 other
X	8927741	X_8927741_DEL [dm3] X_9033708_DEL [dm6]	CCA	C	3.368e^-6	0.365	INTRON CR43836 & 1 other
3L	12852441	3L_12852441_SNP [dm3] 3L_12859341_SNP [dm6]	C	T	3.373e^-6	0.365	NON_SYNONYMOUS_CODING CG32107
X	8927823	X_8927823_SNP [dm3] X_9033790_SNP [dm6]	G	T	3.574e^-6	0.365	INTRON CR43836 & 1 other
2L	12064109	2L_12064109_SNP [dm3] 2L_12064109_SNP [dm6]	G	T	3.752e^-6	0.365	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
3L	5231686	3L_5231686_DEL [dm3] 3L_5238586_DEL [dm6]	GCC	G	4.094e^-6	0.365	INTRON shep
3L	5231689	3L_5231689_DEL [dm3] 3L_5238589_DEL [dm6]	GTAAAAATGCGA...	G	4.094e^-6	0.365	INTRON shep
2L	284303	2L_284303_SNP [dm3] 2L_284303_SNP [dm6]	T	C	4.476e^-6	0.381	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5231642	3L_5231642_DEL [dm3] 3L_5238542_DEL [dm6]	TGGCG	T	5.552e^-6	0.427	INTRON shep
3L	5231662	3L_5231662_SNP [dm3] 3L_5238562_SNP [dm6]	T	C	5.552e^-6	0.427	INTRON shep
X	8927778	X_8927778_SNP [dm3] X_9033745_SNP [dm6]	C	A	5.805e^-6	0.427	INTRON CR43836 & 1 other
X	8931352	X_8931352_SNP [dm3] X_9037319_SNP [dm6]	T	C	5.920e^-6	0.427	INTRON CR43836 & 1 other
2R	9075508	2R_9075508_SNP [dm3] 2R_13188003_SNP [dm6]	A	G	6.409e^-6	0.437	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5231661	3L_5231661_SNP [dm3] 3L_5238561_SNP [dm6]	C	T	6.891e^-6	0.437	INTRON shep
3L	10632868	3L_10632868_SNP [dm3] 3L_10639768_SNP [dm6]	C	T	7.059e^-6	0.437	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
2R	16989542	2R_16989542_SNP [dm3] 2R_21102037_SNP [dm6]	A	G	7.220e^-6	0.437	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5231649	3L_5231649_SNP [dm3] 3L_5238549_SNP [dm6]	C	A	7.233e^-6	0.437	INTRON shep
2L	20790060	2L_20790060_SNP [dm3] 2L_20790060_SNP [dm6]	G	T	7.592e^-6	0.441	SPLICE_SITE_REGION vari DOWNSTREAM Pomp INTRON vari	TF binding site mE1_TFBS_sens
3R	14453825	3R_14453825_SNP [dm3] 3R_18628103_SNP [dm6]	A	C	7.796e^-6	0.441	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
X	8927814	X_8927814_SNP [dm3] X_9033781_SNP [dm6]	A	T	8.024e^-6	0.441	INTRON CR43836 & 1 other
X	8927786	X_8927786_SNP [dm3] X_9033753_SNP [dm6]	A	G	8.347e^-6	0.441	INTRON CR43836 & 1 other
2L	13844347	2L_13844347_SNP [dm3] 2L_13844347_SNP [dm6]	T	A	8.470e^-6	0.441	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad
3L	5231602	3L_5231602_DEL [dm3] 3L_5238502_DEL [dm6]	GGACTCAATACAATCCTGTA...	G	8.790e^-6	0.444	INTRON shep
2R	16686787	2R_16686787_SNP [dm3] 2R_20799282_SNP [dm6]	C	T	9.006e^-6	0.444	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16987601	2R_16987601_SNP [dm3] 2R_21100096_SNP [dm6]	C	T	9.608e^-6	0.462	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16985709	2R_16985709_SNP [dm3] 2R_21098204_SNP [dm6]	C	A	1.265e^-5	0.591	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5228425	2R_5228425_SNP [dm3] 2R_9340920_SNP [dm6]	A	G	1.328e^-5	0.591	INTRON CG13954 & 1 other
2R	6735422	2R_6735422_SNP [dm3] 2R_10847917_SNP [dm6]	T	C	1.345e^-5	0.591	INTRON CG30015
3L	13058142	3L_13058142_SNP [dm3] 3L_13065042_SNP [dm6]	C	A	1.391e^-5	0.591	INTERGENIC
3L	6052400	3L_6052400_SNP [dm3] 3L_6059300_SNP [dm6]	T	G	1.397e^-5	0.591	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	5231716	3L_5231716_SNP [dm3] 3L_5238616_SNP [dm6]	G	T	1.450e^-5	0.591	INTRON shep
2R	16987557	2R_16987557_SNP [dm3] 2R_21100052_SNP [dm6]	G	A	1.451e^-5	0.591	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	8927826	X_8927826_SNP [dm3] X_9033793_SNP [dm6]	G	A	1.496e^-5	0.594	INTRON CR43836 & 1 other
2L	5773907	2L_5773907_DEL [dm3] 2L_5773907_DEL [dm6]	AAT	C	1.522e^-5	0.594	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10632892	3L_10632892_SNP [dm3] 3L_10639792_SNP [dm6]	C	T	1.616e^-5	0.618	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
2L	13641318	2L_13641318_SNP [dm3] 2L_13641318_SNP [dm6]	A	G	1.817e^-5	0.681	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12470353	2R_12470353_SNP [dm3] 2R_16582848_SNP [dm6]	T	G	1.875e^-5	0.686	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12852638	3L_12852638_SNP [dm3] 3L_12859538_SNP [dm6]	T	G	1.905e^-5	0.686	NON_SYNONYMOUS_CODING CG32107
2L	333077	2L_333077_SNP [dm3] 2L_333077_SNP [dm6]	A	C	1.980e^-5	0.687	UPSTREAM CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13844768	2R_13844768_SNP [dm3] 2R_17957263_SNP [dm6]	G	A	1.980e^-5	0.687	UPSTREAM PpY-55A INTERGENIC
3L	10835024	3L_10835024_SNP [dm3] 3L_10841924_SNP [dm6]	T	C	2.025e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	4905095	3R_4905095_SNP [dm3] 3R_9079373_SNP [dm6]	C	A	2.164e^-5	0.702	INTRON pum
3L	12852622	3L_12852622_SNP [dm3] 3L_12859522_SNP [dm6]	T	A	2.220e^-5	0.702	SYNONYMOUS_CODING CG32107
3L	2626348	3L_2626348_SNP [dm3] 3L_2626348_SNP [dm6]	A	T	2.224e^-5	0.702	INTRON Pxn
3L	11509025	3L_11509025_SNP [dm3] 3L_11515925_SNP [dm6]	T	C	2.275e^-5	0.702	INTRON CG7512
2R	15434782	2R_15434782_SNP [dm3] 2R_19547277_SNP [dm6]	C	A	2.277e^-5	0.702	UPSTREAM sm INTRON sm
3L	11509052	3L_11509052_SNP [dm3] 3L_11515952_SNP [dm6]	A	T	2.328e^-5	0.702	INTRON CG7512
2L	13821812	2L_13821812_SNP [dm3] 2L_13821812_SNP [dm6]	G	C	2.337e^-5	0.702	NON_SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3393589	2L_3393589_SNP [dm3] 2L_3393589_SNP [dm6]	G	A	2.379e^-5	0.702	INTERGENIC
2R	5228436	2R_5228436_SNP [dm3] 2R_9340931_SNP [dm6]	C	T	2.396e^-5	0.702	INTRON CG13954 & 1 other
X	6541215	X_6541215_SNP [dm3] X_6647182_SNP [dm6]	G	A	2.475e^-5	0.706	INTRON pigs	TF binding site mE1_TFBS_chinmo
2L	14014158	2L_14014158_SNP [dm3] 2L_14014158_SNP [dm6]	A	G	2.486e^-5	0.706	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	5901558	2R_5901558_SNP [dm3] 2R_10014053_SNP [dm6]	A	T	2.576e^-5	0.721	INTRON Pka-R2
X	6806993	X_6806993_SNP [dm3] X_6912960_SNP [dm6]	T	C	2.618e^-5	0.722	INTRON CG14431
X	15173297	X_15173297_SNP [dm3] X_15279264_SNP [dm6]	G	T	2.711e^-5	0.736	INTERGENIC
2L	3720935	2L_3720935_SNP [dm3] 2L_3720935_SNP [dm6]	G	A	2.813e^-5	0.753	UPSTREAM Shaw INTRON Shaw
2L	19856691	2L_19856691_SNP [dm3] 2L_19856691_SNP [dm6]	G	A	2.958e^-5	0.769	INTRON sick
3L	10893565	3L_10893565_DEL [dm3] 3L_10900465_DEL [dm6]	GG	G	3.029e^-5	0.769	INTERGENIC
2R	13840994	2R_13840994_SNP [dm3] 2R_17953489_SNP [dm6]	G	A	3.040e^-5	0.769	INTERGENIC
3L	12852427	3L_12852427_SNP [dm3] 3L_12859327_SNP [dm6]	T	G	3.079e^-5	0.769	NON_SYNONYMOUS_CODING CG32107
2L	1856218	2L_1856218_SNP [dm3] 2L_1856218_SNP [dm6]	A	G	3.093e^-5	0.769	INTRON wry
3L	6052492	3L_6052492_SNP [dm3] 3L_6059392_SNP [dm6]	T	G	3.147e^-5	0.769	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	6052716	3L_6052716_SNP [dm3] 3L_6059616_SNP [dm6]	T	A	3.180e^-5	0.769	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2L	7929503	2L_7929503_SNP [dm3] 2L_7929503_SNP [dm6]	A	T	3.200e^-5	0.769	INTRON Snoo
3R	14453686	3R_14453686_SNP [dm3] 3R_18627964_SNP [dm6]	A	T	3.318e^-5	0.779	DOWNSTREAM tRNA:CR31228 INTRON qin
2L	13844337	2L_13844337_SNP [dm3] 2L_13844337_SNP [dm6]	C	T	3.325e^-5	0.779	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad
2R	16985281	2R_16985281_SNP [dm3] 2R_21097776_SNP [dm6]	G	A	3.522e^-5	0.815	UTR_5_PRIME CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6806997	X_6806997_SNP [dm3] X_6912964_SNP [dm6]	C	G	3.694e^-5	0.84	INTRON CG14431
X	12654109	X_12654109_SNP [dm3] X_12760076_SNP [dm6]	C	A	3.738e^-5	0.84	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	5773918	2L_5773918_SNP [dm3] 2L_5773918_SNP [dm6]	C	T	3.766e^-5	0.84	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	6540246	X_6540246_SNP [dm3] X_6646213_SNP [dm6]	A	G	3.840e^-5	0.845	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	5900874	2R_5900874_SNP [dm3] 2R_10013369_SNP [dm6]	T	G	3.897e^-5	0.845	INTRON Pka-R2
2R	6735556	2R_6735556_SNP [dm3] 2R_10848051_SNP [dm6]	A	T	3.921e^-5	0.845	INTRON CG30015
X	5250117	X_5250117_SNP [dm3] X_5356084_SNP [dm6]	T	C	3.988e^-5	0.847	INTRON SK
3L	11508941	3L_11508941_SNP [dm3] 3L_11515841_SNP [dm6]	G	A	4.054e^-5	0.847	INTRON CG7512
2R	17501493	2R_17501493_SNP [dm3] 2R_21613988_SNP [dm6]	T	G	4.141e^-5	0.847	UTR_3_PRIME CG18870 UPSTREAM CG15673 DOWNSTREAM CG18870
2L	13641515	2L_13641515_SNP [dm3] 2L_13641515_SNP [dm6]	T	C	4.232e^-5	0.847	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl
2L	12263756	2L_12263756_SNP [dm3] 2L_12263756_SNP [dm6]	A	G	4.256e^-5	0.847	INTRON aret
3L	6052459	3L_6052459_SNP [dm3] 3L_6059359_SNP [dm6]	T	C	4.284e^-5	0.847	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	8071926	2L_8071926_SNP [dm3] 2L_8071926_SNP [dm6]	T	A	4.289e^-5	0.847	UTR_3_PRIME MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11383656	3L_11383656_SNP [dm3] 3L_11390556_SNP [dm6]	T	A	4.293e^-5	0.847	INTERGENIC
3L	5231658	3L_5231658_SNP [dm3] 3L_5238558_SNP [dm6]	T	A	4.460e^-5	0.864	INTRON shep
2R	6672439	2R_6672439_INS [dm3] 2R_10784934_INS [dm6]	A	AACATTCG	4.470e^-5	0.864	DOWNSTREAM CR44300 INTRON CG33144 EXON CR44299
3R	6562159	3R_6562159_SNP [dm3] 3R_10736437_SNP [dm6]	G	T	4.667e^-5	0.889	UPSTREAM tomboy20 INTERGENIC
X	6807221	X_6807221_INS [dm3] X_6913188_INS [dm6]	C	CTACCATACACACAC...	4.751e^-5	0.889	INTRON CG14431
2L	1523356	2L_1523356_SNP [dm3] 2L_1523356_SNP [dm6]	C	A	4.767e^-5	0.889	SYNONYMOUS_CODING Or22b
2L	1937028	2L_1937028_SNP [dm3] 2L_1937028_SNP [dm6]	G	T	4.789e^-5	0.889	INTRON CG7337	TF binding site mE1_TFBS_cad
3L	6839724	3L_6839724_SNP [dm3] 3L_6846624_SNP [dm6]	C	A	4.974e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr
3L	5231732	3L_5231732_DEL [dm3] 3L_5238632_DEL [dm6]	GAG	G	5.003e^-5	0.902	INTRON shep
2L	17541992	2L_17541992_SNP [dm3] 2L_17541992_SNP [dm6]	T	A	5.076e^-5	0.902	INTRON CR43304
3L	14141053	3L_14141053_SNP [dm3] 3L_14147953_SNP [dm6]	T	A	5.253e^-5	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	1690538	3L_1690538_SNP [dm3] 3L_1690538_SNP [dm6]	C	T	5.275e^-5	0.902	INTRON CG7991
2L	2696278	2L_2696278_SNP [dm3] 2L_2696278_SNP [dm6]	G	A	5.387e^-5	0.902	NON_SYNONYMOUS_CODING CG15398 INTRON CG31690
2L	12267950	2L_12267950_DEL [dm3] 2L_12267950_DEL [dm6]	AAGA	A	5.401e^-5	0.902	INTRON aret
2L	282652	2L_282652_SNP [dm3] 2L_282652_SNP [dm6]	G	T	5.446e^-5	0.902	SPLICE_SITE_DONOR CG11601 DOWNSTREAM smo & 1 other INTRON CG11601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	300821	2L_300821_SNP [dm3] 2L_300821_SNP [dm6]	G	A	5.446e^-5	0.902	UPSTREAM Pi3K21B INTRON Pi3K21B
2L	309316	2L_309316_SNP [dm3] 2L_309316_SNP [dm6]	C	T	5.446e^-5	0.902	UPSTREAM Plc21C INTRON Plc21C EXON CR43719
2R	16985751	2R_16985751_SNP [dm3] 2R_21098246_SNP [dm6]	A	G	5.460e^-5	0.902	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16424073	3L_16424073_SNP [dm3] 3L_16430973_SNP [dm6]	T	C	5.535e^-5	0.902	INTRON CG33158 & 1 other
3L	16424074	3L_16424074_SNP [dm3] 3L_16430974_SNP [dm6]	C	A	5.535e^-5	0.902	INTRON CG33158 & 1 other
X	22153168	X_22153168_SNP [dm3] X_22751332_SNP [dm6]	T	A	5.537e^-5	0.902	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
2L	284285	2L_284285_SNP [dm3] 2L_284285_SNP [dm6]	C	A	5.612e^-5	0.903	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10635494	3L_10635494_SNP [dm3] 3L_10642394_SNP [dm6]	C	T	5.696e^-5	0.903	SYNONYMOUS_CODING CG14154 INTRON CG32066
3L	12202230	3L_12202230_SNP [dm3] 3L_12209130_SNP [dm6]	C	T	5.792e^-5	0.903	UTR_3_PRIME app INTRON app
3L	5231849	3L_5231849_SNP [dm3] 3L_5238749_SNP [dm6]	C	A	5.828e^-5	0.903	INTRON shep
3L	2626346	3L_2626346_SNP [dm3] 3L_2626346_SNP [dm6]	G	A	5.829e^-5	0.903	INTRON Pxn
2R	8565678	2R_8565678_SNP [dm3] 2R_12678173_SNP [dm6]	G	T	5.840e^-5	0.903	INTRON CG42708
3R	19910299	3R_19910299_SNP [dm3] 3R_24084577_SNP [dm6]	T	C	6.003e^-5	0.903	INTRON 4EHP
3L	6052557	3L_6052557_SNP [dm3] 3L_6059457_SNP [dm6]	A	T	6.023e^-5	0.903	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	14528987	3R_14528987_SNP [dm3] 3R_18703265_SNP [dm6]	T	C	6.055e^-5	0.903	INTERGENIC
2L	9553144	2L_9553144_SNP [dm3] 2L_9553144_SNP [dm6]	T	G	6.097e^-5	0.903	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5231719	3L_5231719_INS [dm3] 3L_5238619_INS [dm6]	T	TATAATAGATAA...	6.170e^-5	0.903	INTRON shep
2L	3720617	2L_3720617_SNP [dm3] 2L_3720617_SNP [dm6]	A	T	6.181e^-5	0.903	UPSTREAM Shaw INTRON Shaw
X	3221410	X_3221410_SNP [dm3] X_3327377_SNP [dm6]	A	G	6.212e^-5	0.903	INTRON CR44886 & 1 other
2L	5495405	2L_5495405_SNP [dm3] 2L_5495405_SNP [dm6]	G	A	6.254e^-5	0.903	INTERGENIC
3L	10578961	3L_10578961_SNP [dm3] 3L_10585861_SNP [dm6]	A	G	6.268e^-5	0.903	INTRON A2bp1
3L	5370456	3L_5370456_SNP [dm3] 3L_5377356_SNP [dm6]	G	A	6.405e^-5	0.903	UPSTREAM CR45743 INTERGENIC
2L	305149	2L_305149_SNP [dm3] 2L_305149_SNP [dm6]	A	G	6.410e^-5	0.903	UTR_3_PRIME Pi3K21B UPSTREAM Plc21C	TF binding site mE1_TFBS_HSA
X	22153167	X_22153167_SNP [dm3] X_22751331_SNP [dm6]	T	C	6.425e^-5	0.903	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3L	12203761	3L_12203761_INS [dm3] 3L_12210661_INS [dm6]	G	GG	6.457e^-5	0.903	UTR_3_PRIME app INTRON app
3L	10769605	3L_10769605_SNP [dm3] 3L_10776505_SNP [dm6]	T	G	6.538e^-5	0.908	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5231718	3L_5231718_SNP [dm3] 3L_5238618_SNP [dm6]	C	A	6.720e^-5	0.926	INTRON shep
2L	17554556	2L_17554556_SNP [dm3] 2L_17554556_SNP [dm6]	C	T	6.832e^-5	0.935	SYNONYMOUS_CODING CG7094
2R	16875344	2R_16875344_SNP [dm3] 2R_20987839_SNP [dm6]	T	C	6.919e^-5	0.935	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16985316	2R_16985316_SNP [dm3] 2R_21097811_SNP [dm6]	G	A	6.935e^-5	0.935	UTR_5_PRIME CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14529177	3R_14529177_SNP [dm3] 3R_18703455_SNP [dm6]	T	C	7.198e^-5	0.954	INTERGENIC
2L	7410534	2L_7410534_SNP [dm3] 2L_7410534_SNP [dm6]	G	A	7.224e^-5	0.954	UPSTREAM CG5181 & 1 other INTERGENIC
3L	5231715	3L_5231715_SNP [dm3] 3L_5238615_SNP [dm6]	A	G	7.323e^-5	0.954	INTRON shep
2R	5926716	2R_5926716_SNP [dm3] 2R_10039211_SNP [dm6]	C	T	7.327e^-5	0.954	NON_SYNONYMOUS_CODING oys
2L	22152296	2L_22152296_SNP [dm3] 2L_22152296_SNP [dm6]	A	T	7.327e^-5	0.954	NON_SYNONYMOUS_CODING CG34137 INTRON CG42748	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6052543	3L_6052543_SNP [dm3] 3L_6059443_SNP [dm6]	T	A	7.431e^-5	0.954	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	6052550	3L_6052550_SNP [dm3] 3L_6059450_SNP [dm6]	A	T	7.431e^-5	0.954	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	3720667	2L_3720667_SNP [dm3] 2L_3720667_SNP [dm6]	T	C	7.647e^-5	0.969	UPSTREAM Shaw INTRON Shaw
3L	2855550	3L_2855550_SNP [dm3] 3L_2855550_SNP [dm6]	A	G	7.679e^-5	0.969	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5883191	2L_5883191_SNP [dm3] 2L_5883191_SNP [dm6]	T	C	7.722e^-5	0.969	UPSTREAM CG44574 INTERGENIC
2L	22211442	2L_22211442_SNP [dm3] 2L_22211442_SNP [dm6]	A	C	7.957e^-5	0.969	INTRON Ir40a
3R	18756570	3R_18756570_INS [dm3] 3R_22930848_INS [dm6]	T	TTCTGCTT	7.973e^-5	0.969	INTRON klg
3R	19910346	3R_19910346_SNP [dm3] 3R_24084624_SNP [dm6]	A	G	8.002e^-5	0.969	INTRON 4EHP
3L	3796583	3L_3796583_SNP [dm3] 3L_3796583_SNP [dm6]	T	C	8.093e^-5	0.969	INTRON CG32264
2L	22306197	2L_22306197_SNP [dm3] 2L_22306197_SNP [dm6]	A	C	8.168e^-5	0.969	INTERGENIC
3L	6700906	3L_6700906_SNP [dm3] 3L_6707806_SNP [dm6]	C	A	8.174e^-5	0.969	INTRON CG8519
X	6557334	X_6557334_SNP [dm3] X_6663301_SNP [dm6]	A	T	8.198e^-5	0.969	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	5509970	3L_5509970_SNP [dm3] 3L_5516870_SNP [dm6]	G	A	8.259e^-5	0.969	INTRON Lkr
2R	14427525	2R_14427525_SNP [dm3] 2R_18540020_SNP [dm6]	A	T	8.273e^-5	0.969	UTR_5_PRIME Rgk2 DOWNSTREAM Pepck & 1 other	TF binding site mE1_TFBS_chinmo
3L	10566462	3L_10566462_SNP [dm3] 3L_10573362_SNP [dm6]	T	A	8.403e^-5	0.969	INTRON A2bp1
2L	9553409	2L_9553409_SNP [dm3] 2L_9553409_SNP [dm6]	C	T	8.411e^-5	0.969	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	2564329	3L_2564329_SNP [dm3] 3L_2564329_SNP [dm6]	T	C	8.548e^-5	0.969	INTRON msn
2R	12687957	2R_12687957_SNP [dm3] 2R_16800452_SNP [dm6]	A	C	8.691e^-5	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	2208072	2L_2208072_SNP [dm3] 2L_2208072_SNP [dm6]	C	G	8.782e^-5	0.969	SYNONYMOUS_CODING CG33124
2R	5913850	2R_5913850_SNP [dm3] 2R_10026345_SNP [dm6]	A	T	8.871e^-5	0.969	UPSTREAM CG12128 & 1 other DOWNSTREAM CR44294 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	12191078	3L_12191078_SNP [dm3] 3L_12197978_SNP [dm6]	C	A	8.969e^-5	0.969	SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
3R	6805900	3R_6805900_SNP [dm3] 3R_10980178_SNP [dm6]	G	C	9.023e^-5	0.969	INTRON CG34114
X	11354962	X_11354962_SNP [dm3] X_11460929_SNP [dm6]	A	G	9.050e^-5	0.969	INTRON CG43155
2R	5902835	2R_5902835_SNP [dm3] 2R_10015330_SNP [dm6]	C	T	9.097e^-5	0.969	INTRON Pka-R2
X	2215845	X_2215845_SNP [dm3] X_2321812_SNP [dm6]	T	G	9.115e^-5	0.969	DOWNSTREAM CR34052 INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1366740	3L_1366740_SNP [dm3] 3L_1366740_SNP [dm6]	A	G	9.190e^-5	0.969	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16741610	3L_16741610_SNP [dm3] 3L_16748510_SNP [dm6]	T	C	9.304e^-5	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
X	18979409	X_18979409_SNP [dm3] X_19085376_SNP [dm6]	A	G	9.371e^-5	0.969	INTERGENIC
3L	12770248	3L_12770248_SNP [dm3] 3L_12777148_SNP [dm6]	G	A	9.475e^-5	0.969	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
X	13901619	X_13901619_SNP [dm3] X_14007586_SNP [dm6]	A	C	9.491e^-5	0.969	INTERGENIC
2R	18533914	2R_18533914_SNP [dm3] 2R_22646409_SNP [dm6]	T	C	9.616e^-5	0.969	UPSTREAM CG2852 DOWNSTREAM CG30195 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	22211444	2L_22211444_SNP [dm3] 2L_22211444_SNP [dm6]	A	T	9.821e^-5	0.969	INTRON Ir40a
2R	20153641	2R_20153641_DEL [dm3] 2R_24266118_DEL [dm6]	ACA	A	9.853e^-5	0.969	DOWNSTREAM CG3376 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	981576	4_981576_DEL [dm3] 4_960950_DEL [dm6]	TT	T	9.929e^-5	0.969	INTRON CR44030	transposable element FlyBase
2L	17510703	2L_17510703_SNP [dm3] 2L_17510703_SNP [dm6]	T	G	9.953e^-5	0.969	SYNONYMOUS_CODING Dhc36C
3R	26159290	3R_26159290_SNP [dm3] 3R_30333568_SNP [dm6]	T	A	1.003e^-4	0.969	INTRON hdc
2R	6525757	2R_6525757_SNP [dm3] 2R_10638252_SNP [dm6]	A	G	1.014e^-4	0.969	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	1838116	2L_1838116_SNP [dm3] 2L_1838116_SNP [dm6]	T	C	1.015e^-4	0.969	INTRON wry
X	12756893	X_12756893_SNP [dm3] X_12862860_SNP [dm6]	G	T	1.015e^-4	0.969	INTRON Pde9
2R	5911935	2R_5911935_SNP [dm3] 2R_10024430_SNP [dm6]	A	G	1.018e^-4	0.969	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10432354	3L_10432354_SNP [dm3] 3L_10439254_SNP [dm6]	G	T	1.021e^-4	0.969	INTERGENIC
2R	16102628	2R_16102628_SNP [dm3] 2R_20215123_SNP [dm6]	C	T	1.021e^-4	0.969	INTERGENIC
3L	4240006	3L_4240006_SNP [dm3] 3L_4240006_SNP [dm6]	C	G	1.023e^-4	0.969	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14977700	2L_14977700_SNP [dm3] 2L_14977700_SNP [dm6]	T	A	1.024e^-4	0.969	INTRON mol
3L	18329257	3L_18329257_SNP [dm3] 3L_18336157_SNP [dm6]	A	G	1.024e^-4	0.969	INTERGENIC
2L	18692840	2L_18692840_SNP [dm3] 2L_18692840_SNP [dm6]	T	C	1.024e^-4	0.969	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6996154	2R_6996154_INS [dm3] 2R_11108649_INS [dm6]	C	CC	1.031e^-4	0.969	INTRON luna
X	4869925	X_4869925_SNP [dm3] X_4975892_SNP [dm6]	T	C	1.031e^-4	0.969	INTRON CR44833
3L	10835038	3L_10835038_INS [dm3] 3L_10841938_INS [dm6]	T	TTCATCTCCACCT...	1.035e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	11739786	X_11739786_SNP [dm3] X_11845753_SNP [dm6]	C	T	1.055e^-4	0.969	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2684746	3L_2684746_SNP [dm3] 3L_2684746_SNP [dm6]	G	A	1.059e^-4	0.969	INTRON Fife
2R	16875177	2R_16875177_SNP [dm3] 2R_20987672_SNP [dm6]	A	G	1.060e^-4	0.969	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	634589	2L_634589_SNP [dm3] 2L_634589_SNP [dm6]	T	G	1.060e^-4	0.969	INTERGENIC
2R	16985793	2R_16985793_SNP [dm3] 2R_21098288_SNP [dm6]	G	C	1.070e^-4	0.969	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	11354963	X_11354963_SNP [dm3] X_11460930_SNP [dm6]	A	C	1.071e^-4	0.969	INTRON CG43155
3R	5208981	3R_5208981_SNP [dm3] 3R_9383259_SNP [dm6]	A	G	1.079e^-4	0.969	INTRON FER
2L	310715	2L_310715_SNP [dm3] 2L_310715_SNP [dm6]	T	C	1.081e^-4	0.969	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16875166	2R_16875166_SNP [dm3] 2R_20987661_SNP [dm6]	G	A	1.085e^-4	0.969	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15702961	X_15702961_SNP [dm3] X_15808928_SNP [dm6]	T	C	1.091e^-4	0.969	UPSTREAM CR44384 & 1 other INTRON sd
2L	22474460	2L_22474460_SNP [dm3] 2L_22581728_SNP [dm6]	C	A	1.097e^-4	0.969	INTRON CG17494
3L	10566499	3L_10566499_SNP [dm3] 3L_10573399_SNP [dm6]	T	C	1.098e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_chinmo
2L	17554333	2L_17554333_SNP [dm3] 2L_17554333_SNP [dm6]	C	T	1.122e^-4	0.969	DOWNSTREAM CG7094 INTERGENIC
3L	6052395	3L_6052395_INS [dm3] 3L_6059295_INS [dm6]	G	GAAG	1.124e^-4	0.969	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	285917	2L_285917_SNP [dm3] 2L_285917_SNP [dm6]	G	A	1.125e^-4	0.969	UPSTREAM CG3625 INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	284283	2L_284283_SNP [dm3] 2L_284283_SNP [dm6]	C	T	1.127e^-4	0.969	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2364652	3L_2364652_SNP [dm3] 3L_2364652_SNP [dm6]	C	T	1.136e^-4	0.969	INTERGENIC
3L	11509034	3L_11509034_SNP [dm3] 3L_11515934_SNP [dm6]	C	T	1.137e^-4	0.969	INTRON CG7512
2R	6735446	2R_6735446_SNP [dm3] 2R_10847941_SNP [dm6]	G	A	1.146e^-4	0.969	INTRON CG30015
3L	7085199	3L_7085199_SNP [dm3] 3L_7092099_SNP [dm6]	T	A	1.152e^-4	0.969	INTERGENIC
2R	5934471	2R_5934471_SNP [dm3] 2R_10046966_SNP [dm6]	A	T	1.156e^-4	0.969	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12960450	3L_12960450_SNP [dm3] 3L_12967350_SNP [dm6]	A	G	1.157e^-4	0.969	SYNONYMOUS_CODING Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21236940	3R_21236940_SNP [dm3] 3R_25411218_SNP [dm6]	C	T	1.158e^-4	0.969	INTRON Fur1
3L	2688906	3L_2688906_SNP [dm3] 3L_2688906_SNP [dm6]	G	A	1.169e^-4	0.969	INTRON Fife
3R	14653909	3R_14653909_SNP [dm3] 3R_18828187_SNP [dm6]	T	G	1.172e^-4	0.969	INTRON CG18208
3L	9025080	3L_9025080_SNP [dm3] 3L_9031980_SNP [dm6]	C	T	1.177e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21236935	3R_21236935_SNP [dm3] 3R_25411213_SNP [dm6]	T	A	1.180e^-4	0.969	INTRON Fur1
2R	20913815	2R_20913815_SNP [dm3] 2R_25026292_SNP [dm6]	A	C	1.181e^-4	0.969	INTRON uzip	TF binding site BDTNP1_TFBS_da
2L	14977708	2L_14977708_SNP [dm3] 2L_14977708_SNP [dm6]	A	T	1.191e^-4	0.969	INTRON mol
3L	12204497	3L_12204497_SNP [dm3] 3L_12211397_SNP [dm6]	C	T	1.193e^-4	0.969	UTR_3_PRIME app INTRON app	TF binding site mE1_TFBS_cad
3L	6052764	3L_6052764_SNP [dm3] 3L_6059664_SNP [dm6]	A	T	1.196e^-4	0.969	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
X	14521033	X_14521033_SNP [dm3] X_14627000_SNP [dm6]	C	T	1.202e^-4	0.969	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6796074	3R_6796074_DEL [dm3] 3R_10970352_DEL [dm6]	AAAC	A	1.203e^-4	0.969	DOWNSTREAM CR45561 INTERGENIC
3L	6052582	3L_6052582_SNP [dm3] 3L_6059482_SNP [dm6]	T	C	1.216e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	12848973	3L_12848973_SNP [dm3] 3L_12855873_SNP [dm6]	C	G	1.223e^-4	0.969	NON_SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6794288	3R_6794288_SNP [dm3] 3R_10968566_SNP [dm6]	T	A	1.226e^-4	0.969	INTERGENIC
3L	6052469	3L_6052469_SNP [dm3] 3L_6059369_SNP [dm6]	T	C	1.226e^-4	0.969	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	9851153	2L_9851153_SNP [dm3] 2L_9851153_SNP [dm6]	A	G	1.226e^-4	0.969	INTRON nAChRalpha6
3R	6562448	3R_6562448_SNP [dm3] 3R_10736726_SNP [dm6]	T	G	1.237e^-4	0.969	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
2R	5902852	2R_5902852_SNP [dm3] 2R_10015347_SNP [dm6]	C	T	1.246e^-4	0.969	INTRON Pka-R2
X	6866462	X_6866462_SNP [dm3] X_6972429_SNP [dm6]	A	C	1.247e^-4	0.969	UTR_3_PRIME CG3040 DOWNSTREAM CG4586
2L	10730727	2L_10730727_SNP [dm3] 2L_10730727_SNP [dm6]	T	C	1.253e^-4	0.969	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12634944	3L_12634944_SNP [dm3] 3L_12641844_SNP [dm6]	A	T	1.259e^-4	0.969	INTRON CR32111	TF binding site BDTNP1_TFBS_twi
X	6254566	X_6254566_INS [dm3] X_6360533_INS [dm6]	T	TCGGAT	1.262e^-4	0.969	UTR_3_PRIME kdn DOWNSTREAM swaPsi
2R	8435472	2R_8435472_SNP [dm3] 2R_12547967_SNP [dm6]	C	T	1.263e^-4	0.969	INTRON fra	TF binding site mE1_TFBS_cad
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	1.265e^-4	0.969	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5370462	3L_5370462_SNP [dm3] 3L_5377362_SNP [dm6]	G	A	1.271e^-4	0.969	UPSTREAM CR45743 INTERGENIC
2L	20808319	2L_20808319_SNP [dm3] 2L_20808319_SNP [dm6]	A	C	1.281e^-4	0.969	INTRON CG9328
2L	307471	2L_307471_SNP [dm3] 2L_307471_SNP [dm6]	T	C	1.283e^-4	0.969	INTRON Plc21C
X	16425479	X_16425479_SNP [dm3] X_16531446_SNP [dm6]	G	A	1.306e^-4	0.969	INTRON para	TF binding site BDTNP1_TFBS_dl
2L	12337964	2L_12337964_SNP [dm3] 2L_12337964_SNP [dm6]	C	A	1.307e^-4	0.969	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3792979	3L_3792979_SNP [dm3] 3L_3792979_SNP [dm6]	A	C	1.310e^-4	0.969	INTRON CG32264
2L	7927928	2L_7927928_SNP [dm3] 2L_7927928_SNP [dm6]	T	A	1.315e^-4	0.969	INTRON Snoo
2L	5441051	2L_5441051_SNP [dm3] 2L_5441051_SNP [dm6]	A	G	1.315e^-4	0.969	INTERGENIC
2R	5926648	2R_5926648_SNP [dm3] 2R_10039143_SNP [dm6]	T	C	1.319e^-4	0.969	INTRON oys
3L	18082443	3L_18082443_SNP [dm3] 3L_18089343_SNP [dm6]	A	C	1.319e^-4	0.969	SYNONYMOUS_CODING CG13698
2L	12197363	2L_12197363_SNP [dm3] 2L_12197363_SNP [dm6]	C	A	1.338e^-4	0.969	INTRON aret
3L	3792980	3L_3792980_SNP [dm3] 3L_3792980_SNP [dm6]	G	A	1.344e^-4	0.969	INTRON CG32264
2R	17638671	2R_17638671_SNP [dm3] 2R_21751166_SNP [dm6]	A	G	1.348e^-4	0.969	INTERGENIC
3L	5231825	3L_5231825_SNP [dm3] 3L_5238725_SNP [dm6]	A	C	1.348e^-4	0.969	INTRON shep
2R	12315660	2R_12315660_SNP [dm3] 2R_16428155_SNP [dm6]	A	T	1.349e^-4	0.969	INTRON Sema-2b
2R	18440426	2R_18440426_SNP [dm3] 2R_22552921_SNP [dm6]	C	T	1.354e^-4	0.969	DOWNSTREAM CG6018 INTRON px
3L	5370464	3L_5370464_SNP [dm3] 3L_5377364_SNP [dm6]	G	A	1.355e^-4	0.969	UPSTREAM CR45743 INTERGENIC
2L	5773968	2L_5773968_DEL [dm3] 2L_5773968_DEL [dm6]	TTA	T	1.366e^-4	0.969	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6570851	2R_6570851_SNP [dm3] 2R_10683346_SNP [dm6]	T	C	1.369e^-4	0.969	INTRON stan	TF binding site BDTNP1_TFBS_dl
3R	4815113	3R_4815113_SNP [dm3] 3R_8989391_SNP [dm6]	G	C	1.369e^-4	0.969	NON_SYNONYMOUS_CODING CG11970	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15516262	X_15516262_DEL [dm3] X_15622229_DEL [dm6]	TT	T	1.381e^-4	0.969	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6806819	3L_6806819_SNP [dm3] 3L_6813719_SNP [dm6]	A	C	1.381e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	6541138	X_6541138_SNP [dm3] X_6647105_SNP [dm6]	G	A	1.382e^-4	0.969	INTRON pigs	TF binding site mE1_TFBS_chinmo
X	4835890	X_4835890_SNP [dm3] X_4941857_SNP [dm6]	C	T	1.384e^-4	0.969	INTRON Ptp4E
2R	5908877	2R_5908877_SNP [dm3] 2R_10021372_SNP [dm6]	T	C	1.392e^-4	0.969	INTRON Pka-R2
3L	12626136	3L_12626136_SNP [dm3] 3L_12633036_SNP [dm6]	T	C	1.408e^-4	0.969	INTRON CR32111	TF binding site mE1_TFBS_cad
3L	12960462	3L_12960462_SNP [dm3] 3L_12967362_SNP [dm6]	G	T	1.419e^-4	0.969	SYNONYMOUS_CODING Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7042298	2L_7042298_SNP [dm3] 2L_7042298_SNP [dm6]	T	A	1.424e^-4	0.969	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5859281	3R_5859281_SNP [dm3] 3R_10033559_SNP [dm6]	T	A	1.436e^-4	0.969	INTRON Mical
2L	7930481	2L_7930481_SNP [dm3] 2L_7930481_SNP [dm6]	C	T	1.493e^-4	0.969	INTRON Snoo
X	9108204	X_9108204_SNP [dm3] X_9214171_SNP [dm6]	C	T	1.493e^-4	0.969	UPSTREAM Obp8a INTERGENIC
2L	8923470	2L_8923470_SNP [dm3] 2L_8923470_SNP [dm6]	C	A	1.517e^-4	0.969	INTRON CG34398	TF binding site mE1_TFBS_cad
X	17342149	X_17342149_SNP [dm3] X_17448116_SNP [dm6]	C	T	1.522e^-4	0.969	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11754215	X_11754215_SNP [dm3] X_11860182_SNP [dm6]	C	T	1.530e^-4	0.969	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14639412	2L_14639412_SNP [dm3] 2L_14639412_SNP [dm6]	G	A	1.533e^-4	0.969	INTRON osp
3L	10578869	3L_10578869_INS [dm3] 3L_10585769_INS [dm6]	A	ATT	1.536e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	12297502	3L_12297502_SNP [dm3] 3L_12304402_SNP [dm6]	C	G	1.538e^-4	0.969	INTERGENIC
3L	19247388	3L_19247388_SNP [dm3] 3L_19254288_SNP [dm6]	G	A	1.539e^-4	0.969	UTR_3_PRIME mRpL21	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10917028	3L_10917028_SNP [dm3] 3L_10923928_SNP [dm6]	A	C	1.550e^-4	0.969	INTERGENIC
3R	21236936	3R_21236936_SNP [dm3] 3R_25411214_SNP [dm6]	A	G	1.554e^-4	0.969	INTRON Fur1
2R	13814495	2R_13814495_INS [dm3] 2R_17926990_INS [dm6]	T	TT	1.557e^-4	0.969	DOWNSTREAM Elk INTERGENIC
2R	13814502	2R_13814502_SNP [dm3] 2R_17926997_SNP [dm6]	C	T	1.557e^-4	0.969	DOWNSTREAM Elk INTERGENIC
2L	21895892	2L_21895892_SNP [dm3] 2L_21895892_SNP [dm6]	A	G	1.574e^-4	0.969	DOWNSTREAM CR43762 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	18692846	2L_18692846_SNP [dm3] 2L_18692846_SNP [dm6]	G	A	1.578e^-4	0.969	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22658571	3L_22658571_SNP [dm3] 3L_22665471_SNP [dm6]	G	A	1.578e^-4	0.969	EXON CR43270
2L	14977694	2L_14977694_SNP [dm3] 2L_14977694_SNP [dm6]	T	A	1.583e^-4	0.969	INTRON mol
2L	14977696	2L_14977696_DEL [dm3] 2L_14977696_DEL [dm6]	TTA	GC	1.583e^-4	0.969	INTRON mol
2L	14977703	2L_14977703_MNP [dm3] 2L_14977703_MNP [dm6]	AAG	GCT	1.583e^-4	0.969	INTRON mol
2L	14977713	2L_14977713_MNP [dm3] 2L_14977713_MNP [dm6]	AAG	TTT	1.583e^-4	0.969	INTRON mol
2L	14977719	2L_14977719_DEL [dm3] 2L_14977719_DEL [dm6]	ACCAAA	G	1.583e^-4	0.969	INTRON mol
2L	14977751	2L_14977751_SNP [dm3] 2L_14977751_SNP [dm6]	A	G	1.583e^-4	0.969	INTRON mol
2R	5915599	2R_5915599_SNP [dm3] 2R_10028094_SNP [dm6]	C	T	1.583e^-4	0.969	NON_SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
2L	5774052	2L_5774052_SNP [dm3] 2L_5774052_SNP [dm6]	C	A	1.584e^-4	0.969	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5231807	3L_5231807_DEL [dm3] 3L_5238707_DEL [dm6]	TT	T	1.588e^-4	0.969	INTRON shep
3R	5307492	3R_5307492_SNP [dm3] 3R_9481770_SNP [dm6]	T	C	1.596e^-4	0.969	INTRON CG16779
3R	5859091	3R_5859091_SNP [dm3] 3R_10033369_SNP [dm6]	G	T	1.598e^-4	0.969	INTRON Mical
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	1.607e^-4	0.969	EXON CR44334	TF binding site BDTNP1_TFBS_dl
2L	7332883	2L_7332883_SNP [dm3] 2L_7332883_SNP [dm6]	G	A	1.622e^-4	0.969	UPSTREAM Wnt6 INTERGENIC
2L	21105588	2L_21105588_SNP [dm3] 2L_21105588_SNP [dm6]	A	T	1.623e^-4	0.969	INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1690551	3L_1690551_SNP [dm3] 3L_1690551_SNP [dm6]	A	C	1.627e^-4	0.969	INTRON CG7991
2R	18482400	2R_18482400_SNP [dm3] 2R_22594895_SNP [dm6]	A	T	1.630e^-4	0.969	SYNONYMOUS_CODING CG3927	TF binding site mE1_TFBS_inv
2L	18692813	2L_18692813_SNP [dm3] 2L_18692813_SNP [dm6]	A	G	1.634e^-4	0.969	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8985508	2R_8985508_SNP [dm3] 2R_13098003_SNP [dm6]	A	G	1.636e^-4	0.969	INTERGENIC
X	12879361	X_12879361_SNP [dm3] X_12985328_SNP [dm6]	T	A	1.645e^-4	0.969	DOWNSTREAM CG32643 INTERGENIC
3L	10578846	3L_10578846_INS [dm3] 3L_10585746_INS [dm6]	T	TGGTATTCATAA...	1.652e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	329494	2L_329494_SNP [dm3] 2L_329494_SNP [dm6]	A	G	1.654e^-4	0.969	SYNONYMOUS_CODING CG43755 DOWNSTREAM CG31921 INTRON Plc21C
2R	9959608	2R_9959608_SNP [dm3] 2R_14072103_SNP [dm6]	A	G	1.656e^-4	0.969	INTRON Prosap	TF binding site mE1_TFBS_cad
2R	5904896	2R_5904896_SNP [dm3] 2R_10017391_SNP [dm6]	C	G	1.660e^-4	0.969	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	5231821	3L_5231821_SNP [dm3] 3L_5238721_SNP [dm6]	G	T	1.662e^-4	0.969	INTRON shep
2L	14975707	2L_14975707_SNP [dm3] 2L_14975707_SNP [dm6]	C	T	1.672e^-4	0.969	DOWNSTREAM mol & 1 other INTERGENIC
X	19501675	X_19501675_SNP [dm3] X_19607642_SNP [dm6]	A	T	1.677e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	16227933	3L_16227933_SNP [dm3] 3L_16234833_SNP [dm6]	A	C	1.702e^-4	0.969	SYNONYMOUS_CODING l_3_72Dp DOWNSTREAM Hsc20	TF binding site mE1_TFBS_inv
2L	6620606	2L_6620606_SNP [dm3] 2L_6620606_SNP [dm6]	G	T	1.705e^-4	0.969	INTRON CG11320
3R	6492040	3R_6492040_SNP [dm3] 3R_10666318_SNP [dm6]	G	A	1.713e^-4	0.969	INTERGENIC
3L	14965204	3L_14965204_SNP [dm3] 3L_14972104_SNP [dm6]	T	C	1.719e^-4	0.969	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8972653	2L_8972653_SNP [dm3] 2L_8972653_SNP [dm6]	T	G	1.721e^-4	0.969	INTRON CG9541
3L	9255865	3L_9255865_SNP [dm3] 3L_9262765_SNP [dm6]	T	C	1.725e^-4	0.969	INTRON GluRIB
2R	13814509	2R_13814509_INS [dm3] 2R_17927004_INS [dm6]	T	TGACA	1.733e^-4	0.969	DOWNSTREAM Elk INTERGENIC
2R	10436650	2R_10436650_SNP [dm3] 2R_14549145_SNP [dm6]	C	T	1.745e^-4	0.969	INTRON ttv
3L	11509428	3L_11509428_INS [dm3] 3L_11516328_INS [dm6]	A	AATA	1.752e^-4	0.969	INTRON CG7512
2L	749727	2L_749727_SNP [dm3] 2L_749727_SNP [dm6]	C	A	1.753e^-4	0.969	UPSTREAM GABA-B-R3 INTERGENIC
3L	6052410	3L_6052410_SNP [dm3] 3L_6059310_SNP [dm6]	C	G	1.758e^-4	0.969	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	12654220	X_12654220_SNP [dm3] X_12760187_SNP [dm6]	T	A	1.761e^-4	0.969	DOWNSTREAM CG12717 INTRON ade5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5883147	2L_5883147_SNP [dm3] 2L_5883147_SNP [dm6]	A	T	1.762e^-4	0.969	UPSTREAM CG44574 INTERGENIC
2L	13846924	2L_13846924_SNP [dm3] 2L_13846924_SNP [dm6]	A	G	1.763e^-4	0.969	INTRON CenG1A & 1 other
2R	8785492	2R_8785492_SNP [dm3] 2R_12897987_SNP [dm6]	G	A	1.765e^-4	0.969	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11297973	2L_11297973_SNP [dm3] 2L_11297973_SNP [dm6]	C	A	1.769e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18298977	3L_18298977_SNP [dm3] 3L_18305877_SNP [dm6]	C	T	1.771e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6700723	3L_6700723_SNP [dm3] 3L_6707623_SNP [dm6]	T	G	1.780e^-4	0.969	UTR_5_PRIME CG8519 INTRON CG8519	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18770958	2L_18770958_SNP [dm3] 2L_18770958_SNP [dm6]	G	T	1.784e^-4	0.969	INTRON ham
2L	4227607	2L_4227607_SNP [dm3] 2L_4227607_SNP [dm6]	G	T	1.792e^-4	0.969	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	6052572	3L_6052572_SNP [dm3] 3L_6059472_SNP [dm6]	A	C	1.796e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	13812652	2L_13812652_SNP [dm3] 2L_13812652_SNP [dm6]	A	C	1.798e^-4	0.969	UTR_3_PRIME CG16865 DOWNSTREAM CG16888	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16076685	2R_16076685_SNP [dm3] 2R_20189180_SNP [dm6]	G	A	1.800e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5157929	3R_5157929_SNP [dm3] 3R_9332207_SNP [dm6]	A	T	1.804e^-4	0.969	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866
2L	5773917	2L_5773917_SNP [dm3] 2L_5773917_SNP [dm6]	G	C	1.806e^-4	0.969	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10578903	3L_10578903_DEL [dm3] 3L_10585803_DEL [dm6]	GG	G	1.811e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10018155	3L_10018155_SNP [dm3] 3L_10025055_SNP [dm6]	A	T	1.815e^-4	0.969	INTRON dpr6
3R	18580972	3R_18580972_SNP [dm3] 3R_22755250_SNP [dm6]	A	G	1.820e^-4	0.969	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16266670	X_16266670_SNP [dm3] X_16372637_SNP [dm6]	G	A	1.830e^-4	0.969	UPSTREAM Fur2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19491538	2R_19491538_SNP [dm3] 2R_23604015_SNP [dm6]	A	G	1.833e^-4	0.969	SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
3L	19232318	3L_19232318_SNP [dm3] 3L_19239218_SNP [dm6]	C	G	1.840e^-4	0.969	DOWNSTREAM CR43892 INTERGENIC
3L	9303714	3L_9303714_SNP [dm3] 3L_9310614_SNP [dm6]	G	T	1.841e^-4	0.969	INTERGENIC
3R	18756000	3R_18756000_SNP [dm3] 3R_22930278_SNP [dm6]	C	T	1.853e^-4	0.969	INTRON klg
3L	10635503	3L_10635503_SNP [dm3] 3L_10642403_SNP [dm6]	G	A	1.855e^-4	0.969	SYNONYMOUS_CODING CG14154 INTRON CG32066
X	3157110	X_3157110_SNP [dm3] X_3263077_SNP [dm6]	C	T	1.857e^-4	0.969	INTRON dnc
2L	13641471	2L_13641471_SNP [dm3] 2L_13641471_SNP [dm6]	T	A	1.864e^-4	0.969	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6052668	3L_6052668_SNP [dm3] 3L_6059568_SNP [dm6]	A	G	1.865e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_run
3L	7055218	3L_7055218_SNP [dm3] 3L_7062118_SNP [dm6]	A	C	1.866e^-4	0.969	INTRON CG8641
2L	5773964	2L_5773964_SNP [dm3] 2L_5773964_SNP [dm6]	A	T	1.867e^-4	0.969	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9720205	3L_9720205_SNP [dm3] 3L_9727105_SNP [dm6]	T	C	1.869e^-4	0.969	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13023895	3L_13023895_SNP [dm3] 3L_13030795_SNP [dm6]	A	C	1.888e^-4	0.969	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12528810	3L_12528810_SNP [dm3] 3L_12535710_SNP [dm6]	G	A	1.889e^-4	0.969	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
X	19502399	X_19502399_SNP [dm3] X_19608366_SNP [dm6]	T	C	1.892e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	11621793	2L_11621793_SNP [dm3] 2L_11621793_SNP [dm6]	T	C	1.903e^-4	0.969	UTR_5_PRIME kek2
2R	13814533	2R_13814533_SNP [dm3] 2R_17927028_SNP [dm6]	G	A	1.907e^-4	0.969	DOWNSTREAM Elk INTERGENIC
3R	23770573	3R_23770573_SNP [dm3] 3R_27944851_SNP [dm6]	A	G	1.908e^-4	0.969	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6541155	X_6541155_SNP [dm3] X_6647122_SNP [dm6]	C	A	1.912e^-4	0.969	INTRON pigs	TF binding site mE1_TFBS_chinmo
3L	7400391	3L_7400391_SNP [dm3] 3L_7407291_SNP [dm6]	C	T	1.915e^-4	0.969	DOWNSTREAM pncr015:3L INTERGENIC
2L	7929554	2L_7929554_SNP [dm3] 2L_7929554_SNP [dm6]	G	A	1.915e^-4	0.969	INTRON Snoo
2L	330228	2L_330228_SNP [dm3] 2L_330228_SNP [dm6]	G	A	1.923e^-4	0.969	SYNONYMOUS_CODING CG31921 UPSTREAM CG43755 INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	8565666	2R_8565666_SNP [dm3] 2R_12678161_SNP [dm6]	A	T	1.931e^-4	0.969	INTRON CG42708
X	5198809	X_5198809_SNP [dm3] X_5304776_SNP [dm6]	A	G	1.939e^-4	0.969	SYNONYMOUS_CODING CG3323 INTRON CG42749
2L	13932119	2L_13932119_SNP [dm3] 2L_13932119_SNP [dm6]	T	G	1.944e^-4	0.969	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
X	16425477	X_16425477_SNP [dm3] X_16531444_SNP [dm6]	G	A	1.947e^-4	0.969	INTRON para	TF binding site BDTNP1_TFBS_dl
2R	8785183	2R_8785183_SNP [dm3] 2R_12897678_SNP [dm6]	A	T	1.947e^-4	0.969	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7412302	2L_7412302_SNP [dm3] 2L_7412302_SNP [dm6]	T	A	1.951e^-4	0.969	UPSTREAM chm DOWNSTREAM CG15818 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24540353	3R_24540353_SNP [dm3] 3R_28714631_SNP [dm6]	G	T	1.952e^-4	0.969	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13168841	2R_13168841_SNP [dm3] 2R_17281336_SNP [dm6]	C	G	1.954e^-4	0.969	INTRON mbl
2L	7408787	2L_7408787_SNP [dm3] 2L_7408787_SNP [dm6]	A	G	1.966e^-4	0.969	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3L	10566464	3L_10566464_SNP [dm3] 3L_10573364_SNP [dm6]	T	G	1.967e^-4	0.969	INTRON A2bp1
X	6541116	X_6541116_SNP [dm3] X_6647083_SNP [dm6]	C	T	1.972e^-4	0.969	INTRON pigs	TF binding site mE1_TFBS_chinmo
2L	22523977	2L_22523977_SNP [dm3] 2L_22631245_SNP [dm6]	T	C	1.977e^-4	0.969	INTRON CG40006	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	2034123	3L_2034123_SNP [dm3] 3L_2034123_SNP [dm6]	C	A	1.979e^-4	0.969	INTERGENIC
3R	22707730	3R_22707730_SNP [dm3] 3R_26882008_SNP [dm6]	G	A	1.982e^-4	0.969	UTR_5_PRIME T48 UPSTREAM ro	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6735439	2R_6735439_SNP [dm3] 2R_10847934_SNP [dm6]	T	G	1.988e^-4	0.969	INTRON CG30015
3L	7389604	3L_7389604_SNP [dm3] 3L_7396504_SNP [dm6]	G	A	1.990e^-4	0.969	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
3L	6052475	3L_6052475_SNP [dm3] 3L_6059375_SNP [dm6]	T	C	1.992e^-4	0.969	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	6807227	X_6807227_SNP [dm3] X_6913194_SNP [dm6]	A	G	1.998e^-4	0.969	INTRON CG14431
3L	5149576	3L_5149576_DEL [dm3] 3L_5156476_DEL [dm6]	TT	T	2.006e^-4	0.969	UTR_3_PRIME shep
2L	9553556	2L_9553556_SNP [dm3] 2L_9553556_SNP [dm6]	A	C	2.007e^-4	0.969	INTRON jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	10579034	3L_10579034_SNP [dm3] 3L_10585934_SNP [dm6]	G	A	2.011e^-4	0.969	INTRON A2bp1
2L	12197451	2L_12197451_SNP [dm3] 2L_12197451_SNP [dm6]	A	G	2.023e^-4	0.969	INTRON aret
2R	16986678	2R_16986678_SNP [dm3] 2R_21099173_SNP [dm6]	C	A	2.025e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
X	19501673	X_19501673_SNP [dm3] X_19607640_SNP [dm6]	A	G	2.044e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	3870173	3L_3870173_SNP [dm3] 3L_3870173_SNP [dm6]	G	A	2.045e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22567482	2L_22567482_SNP [dm3] 2L_22674750_SNP [dm6]	A	T	2.050e^-4	0.969	INTRON CG40006
3R	6306022	3R_6306022_SNP [dm3] 3R_10480300_SNP [dm6]	A	T	2.063e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6921290	3R_6921290_SNP [dm3] 3R_11095568_SNP [dm6]	C	G	2.071e^-4	0.969	INTERGENIC
3L	6052754	3L_6052754_SNP [dm3] 3L_6059654_SNP [dm6]	T	A	2.079e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2L	15031303	2L_15031303_SNP [dm3] 2L_15031303_SNP [dm6]	T	G	2.088e^-4	0.969	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3R	6921291	3R_6921291_SNP [dm3] 3R_11095569_SNP [dm6]	T	A	2.090e^-4	0.969	INTERGENIC
X	19688247	X_19688247_SNP [dm3] X_19794214_SNP [dm6]	G	T	2.090e^-4	0.969	INTERGENIC
2L	1523539	2L_1523539_INS [dm3] 2L_1523539_INS [dm6]	T	TCCATTCGCTT...	2.094e^-4	0.969	INTRON Or22b
2L	3721252	2L_3721252_SNP [dm3] 2L_3721252_SNP [dm6]	C	A	2.108e^-4	0.969	UPSTREAM Shaw INTRON Shaw
2R	12687801	2R_12687801_SNP [dm3] 2R_16800296_SNP [dm6]	C	A	2.109e^-4	0.969	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5283119	3L_5283119_SNP [dm3] 3L_5290019_SNP [dm6]	C	G	2.112e^-4	0.969	INTERGENIC
2L	11236375	2L_11236375_SNP [dm3] 2L_11236375_SNP [dm6]	C	T	2.114e^-4	0.969	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl
3L	5370494	3L_5370494_SNP [dm3] 3L_5377394_SNP [dm6]	C	A	2.117e^-4	0.969	UPSTREAM CR45743 INTERGENIC
2L	4181118	2L_4181118_SNP [dm3] 2L_4181118_SNP [dm6]	T	C	2.119e^-4	0.969	INTERGENIC
2R	8565710	2R_8565710_INS [dm3] 2R_12678205_INS [dm6]	A	AGATTG	2.131e^-4	0.969	INTRON CG42708
2L	14781204	2L_14781204_SNP [dm3] 2L_14781204_SNP [dm6]	C	A	2.132e^-4	0.969	DOWNSTREAM CR15280 INTERGENIC
2L	13819471	2L_13819471_DEL [dm3] 2L_13819471_DEL [dm6]	TAT	T	2.139e^-4	0.969	UTR_3_PRIME Sos	TF binding site mE1_TFBS_cad
2L	21101527	2L_21101527_SNP [dm3] 2L_21101527_SNP [dm6]	C	T	2.139e^-4	0.969	SYNONYMOUS_CODING CG12050
2R	1327577	2R_1327577_SNP [dm3] 2R_5440072_SNP [dm6]	C	T	2.140e^-4	0.969	INTRON laccase2
2L	16736281	2L_16736281_SNP [dm3] 2L_16736281_SNP [dm6]	A	T	2.140e^-4	0.969	SYNONYMOUS_CODING glu
2L	7410763	2L_7410763_SNP [dm3] 2L_7410763_SNP [dm6]	A	T	2.144e^-4	0.969	UPSTREAM CG5181 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
X	4565560	X_4565560_SNP [dm3] X_4671527_SNP [dm6]	G	A	2.150e^-4	0.969	INTRON rap
2L	326244	2L_326244_SNP [dm3] 2L_326244_SNP [dm6]	C	A	2.151e^-4	0.969	INTRON Plc21C & 1 other
3L	10566468	3L_10566468_SNP [dm3] 3L_10573368_SNP [dm6]	A	G	2.157e^-4	0.969	INTRON A2bp1
2R	13814493	2R_13814493_SNP [dm3] 2R_17926988_SNP [dm6]	G	T	2.164e^-4	0.969	DOWNSTREAM Elk INTERGENIC
3L	18300087	3L_18300087_SNP [dm3] 3L_18306987_SNP [dm6]	C	T	2.174e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14699122	3R_14699122_SNP [dm3] 3R_18873400_SNP [dm6]	A	C	2.181e^-4	0.969	INTERGENIC
2L	7415193	2L_7415193_SNP [dm3] 2L_7415193_SNP [dm6]	G	A	2.185e^-4	0.969	INTRON chm
3L	2169192	3L_2169192_SNP [dm3] 3L_2169192_SNP [dm6]	G	T	2.185e^-4	0.969	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
2R	14818450	2R_14818450_SNP [dm3] 2R_18930945_SNP [dm6]	C	G	2.188e^-4	0.969	INTRON sano
2R	18983830	2R_18983830_DEL [dm3] 2R_23096307_DEL [dm6]	GGT	G	2.191e^-4	0.969	INTERGENIC
3L	4272119	3L_4272119_SNP [dm3] 3L_4272119_SNP [dm6]	T	C	2.203e^-4	0.969	SYNONYMOUS_CODING CG1273
2L	4227613	2L_4227613_SNP [dm3] 2L_4227613_SNP [dm6]	G	A	2.204e^-4	0.969	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	11139682	2L_11139682_SNP [dm3] 2L_11139682_SNP [dm6]	G	A	2.212e^-4	0.969	INTRON Gyc32E
2L	10730671	2L_10730671_SNP [dm3] 2L_10730671_SNP [dm6]	T	C	2.212e^-4	0.969	DOWNSTREAM CG6443 & 1 other INTRON CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5915232	2R_5915232_SNP [dm3] 2R_10027727_SNP [dm6]	G	T	2.244e^-4	0.969	SYNONYMOUS_CODING CG12128 UPSTREAM CR44294 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
3L	7400347	3L_7400347_SNP [dm3] 3L_7407247_SNP [dm6]	T	G	2.251e^-4	0.969	DOWNSTREAM pncr015:3L INTERGENIC
2R	8435182	2R_8435182_SNP [dm3] 2R_12547677_SNP [dm6]	T	A	2.258e^-4	0.969	INTRON fra
2L	17537565	2L_17537565_SNP [dm3] 2L_17537565_SNP [dm6]	A	G	2.258e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6839814	3L_6839814_INS [dm3] 3L_6846714_INS [dm6]	T	TGG	2.264e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2R	18981148	2R_18981148_SNP [dm3] 2R_23093625_SNP [dm6]	G	A	2.271e^-4	0.969	INTRON CG9876
2L	329600	2L_329600_SNP [dm3] 2L_329600_SNP [dm6]	G	T	2.273e^-4	0.969	NON_SYNONYMOUS_CODING CG43755 DOWNSTREAM CG31921 INTRON Plc21C
3L	2034082	3L_2034082_SNP [dm3] 3L_2034082_SNP [dm6]	A	C	2.283e^-4	0.969	INTERGENIC
3L	9961132	3L_9961132_SNP [dm3] 3L_9968032_SNP [dm6]	G	C	2.288e^-4	0.969	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	5904191	2R_5904191_SNP [dm3] 2R_10016686_SNP [dm6]	A	T	2.297e^-4	0.969	INTRON Pka-R2
2L	21104162	2L_21104162_SNP [dm3] 2L_21104162_SNP [dm6]	T	G	2.298e^-4	0.969	UTR_3_PRIME CG9257 UPSTREAM Nhe2 EXON CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18981235	2R_18981235_SNP [dm3] 2R_23093712_SNP [dm6]	G	A	2.298e^-4	0.969	SPLICE_SITE_REGION CG9876 SYNONYMOUS_CODING CG9876
2L	11928195	2L_11928195_SNP [dm3] 2L_11928195_SNP [dm6]	A	C	2.323e^-4	0.969	INTRON Pde1c	TF binding site mE1_TFBS_inv
X	17341590	X_17341590_SNP [dm3] X_17447557_SNP [dm6]	C	T	2.323e^-4	0.969	SYNONYMOUS_CODING p-cup	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16424107	3L_16424107_SNP [dm3] 3L_16431007_SNP [dm6]	A	G	2.330e^-4	0.969	INTRON CG33158 & 1 other
3R	14907223	3R_14907223_SNP [dm3] 3R_19081501_SNP [dm6]	G	T	2.331e^-4	0.969	INTRON cdi
2L	338520	2L_338520_SNP [dm3] 2L_338520_SNP [dm6]	A	C	2.343e^-4	0.969	INTRON Plc21C
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	2.358e^-4	0.969	INTRON CR44997
2L	15216727	2L_15216727_DEL [dm3] 2L_15216727_DEL [dm6]	TAT	T	2.358e^-4	0.969	DOWNSTREAM CG43230 INTERGENIC
2L	7930494	2L_7930494_SNP [dm3] 2L_7930494_SNP [dm6]	C	A	2.359e^-4	0.969	INTRON Snoo
3L	12991915	3L_12991915_SNP [dm3] 3L_12998815_SNP [dm6]	A	G	2.378e^-4	0.969	INTERGENIC
3L	2706275	3L_2706275_SNP [dm3] 3L_2706275_SNP [dm6]	T	C	2.379e^-4	0.969	INTRON Fife
2R	9225159	2R_9225159_SNP [dm3] 2R_13337654_SNP [dm6]	G	C	2.381e^-4	0.969	INTRON CR44206	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6921579	3R_6921579_SNP [dm3] 3R_11095857_SNP [dm6]	T	C	2.396e^-4	0.969	INTERGENIC
2R	13740490	2R_13740490_SNP [dm3] 2R_17852985_SNP [dm6]	C	T	2.408e^-4	0.969	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16270519	X_16270519_SNP [dm3] X_16376486_SNP [dm6]	G	C	2.414e^-4	0.969	INTRON Fur2
3L	10769606	3L_10769606_SNP [dm3] 3L_10776506_SNP [dm6]	A	T	2.414e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14405810	3L_14405810_SNP [dm3] 3L_14412710_SNP [dm6]	A	C	2.414e^-4	0.969	UTR_3_PRIME CG3919 DOWNSTREAM bbg
2L	14781125	2L_14781125_SNP [dm3] 2L_14781125_SNP [dm6]	T	A	2.424e^-4	0.969	DOWNSTREAM CR15280 INTERGENIC
3R	14529172	3R_14529172_SNP [dm3] 3R_18703450_SNP [dm6]	C	A	2.428e^-4	0.969	INTERGENIC
2R	5917094	2R_5917094_SNP [dm3] 2R_10029589_SNP [dm6]	A	G	2.433e^-4	0.969	UTR_3_PRIME CG12128 & 1 other DOWNSTREAM CG1407 INTRON CG1407
2R	13997199	2R_13997199_SNP [dm3] 2R_18109694_SNP [dm6]	A	C	2.433e^-4	0.969	UPSTREAM CG34196 INTERGENIC
2L	21086596	2L_21086596_SNP [dm3] 2L_21086596_SNP [dm6]	T	C	2.435e^-4	0.969	UPSTREAM CG33509 DOWNSTREAM ppk13 INTERGENIC
2L	11710313	2L_11710313_SNP [dm3] 2L_11710313_SNP [dm6]	G	T	2.438e^-4	0.969	INTERGENIC
3L	5507094	3L_5507094_SNP [dm3] 3L_5513994_SNP [dm6]	T	A	2.451e^-4	0.969	INTRON Lkr
2R	8438618	2R_8438618_SNP [dm3] 2R_12551113_SNP [dm6]	C	A	2.453e^-4	0.969	INTRON fra	TF binding site mE1_TFBS_inv
2R	17812222	2R_17812222_SNP [dm3] 2R_21924717_SNP [dm6]	T	C	2.455e^-4	0.969	INTRON Fili
3L	10792142	3L_10792142_SNP [dm3] 3L_10799042_SNP [dm6]	G	A	2.455e^-4	0.969	INTERGENIC
3R	6816762	3R_6816762_SNP [dm3] 3R_10991040_SNP [dm6]	A	G	2.456e^-4	0.969	INTRON CG34114
3L	19512147	3L_19512147_SNP [dm3] 3L_19519047_SNP [dm6]	T	C	2.464e^-4	0.969	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2R	16986819	2R_16986819_SNP [dm3] 2R_21099314_SNP [dm6]	A	T	2.470e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	6052381	3L_6052381_DEL [dm3] 3L_6059281_DEL [dm6]	AA	A	2.473e^-4	0.969	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	10212312	2R_10212312_SNP [dm3] 2R_14324807_SNP [dm6]	A	C	2.475e^-4	0.969	INTRON Shroom
3L	1421745	3L_1421745_SNP [dm3] 3L_1421745_SNP [dm6]	G	A	2.484e^-4	0.969	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20296966	2L_20296966_SNP [dm3] 2L_20296966_SNP [dm6]	T	C	2.490e^-4	0.969	EXON CR43414
2L	12197479	2L_12197479_SNP [dm3] 2L_12197479_SNP [dm6]	A	G	2.494e^-4	0.969	INTRON aret
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	2.503e^-4	0.969	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	2.514e^-4	0.969	INTERGENIC
3R	6927278	3R_6927278_SNP [dm3] 3R_11101556_SNP [dm6]	C	T	2.515e^-4	0.969	EXON CR45579
3L	18082455	3L_18082455_SNP [dm3] 3L_18089355_SNP [dm6]	A	G	2.521e^-4	0.969	SYNONYMOUS_CODING CG13698
X	15172283	X_15172283_SNP [dm3] X_15278250_SNP [dm6]	T	C	2.522e^-4	0.969	INTERGENIC
3L	9960832	3L_9960832_SNP [dm3] 3L_9967732_SNP [dm6]	C	T	2.529e^-4	0.969	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9596874	2L_9596874_SNP [dm3] 2L_9596874_SNP [dm6]	A	T	2.532e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	17235184	2R_17235184_SNP [dm3] 2R_21347679_SNP [dm6]	T	A	2.540e^-4	0.969	INTRON CG9822
2R	8188140	2R_8188140_SNP [dm3] 2R_12300635_SNP [dm6]	C	T	2.541e^-4	0.969	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6052673	3L_6052673_SNP [dm3] 3L_6059573_SNP [dm6]	T	C	2.542e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_run
2R	8785172	2R_8785172_SNP [dm3] 2R_12897667_SNP [dm6]	T	G	2.553e^-4	0.969	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	2.563e^-4	0.969	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	15434788	2R_15434788_SNP [dm3] 2R_19547283_SNP [dm6]	T	A	2.566e^-4	0.969	UPSTREAM sm INTRON sm
3R	26833155	3R_26833155_SNP [dm3] 3R_31007433_SNP [dm6]	G	T	2.568e^-4	0.969	INTRON 5-HT7
2L	3720775	2L_3720775_SNP [dm3] 2L_3720775_SNP [dm6]	C	T	2.587e^-4	0.969	UPSTREAM Shaw INTRON Shaw
X	10667985	X_10667985_SNP [dm3] X_10773952_SNP [dm6]	C	T	2.606e^-4	0.969	INTRON CG15211
3R	10229977	3R_10229977_INS [dm3] 3R_14404255_INS [dm6]	T	CATG	2.606e^-4	0.969	INTRON cv-c
2R	8435112	2R_8435112_SNP [dm3] 2R_12547607_SNP [dm6]	C	A	2.629e^-4	0.969	INTRON fra
2L	21102911	2L_21102911_SNP [dm3] 2L_21102911_SNP [dm6]	A	G	2.630e^-4	0.969	NON_SYNONYMOUS_CODING CG9257 UPSTREAM CG12050 EXON CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	17510638	2L_17510638_SNP [dm3] 2L_17510638_SNP [dm6]	T	C	2.631e^-4	0.969	SYNONYMOUS_CODING Dhc36C
X	18979385	X_18979385_SNP [dm3] X_19085352_SNP [dm6]	T	G	2.634e^-4	0.969	INTERGENIC
2L	14788110	2L_14788110_SNP [dm3] 2L_14788110_SNP [dm6]	G	A	2.638e^-4	0.969	INTERGENIC
2L	5448060	2L_5448060_DEL [dm3] 2L_5448060_DEL [dm6]	ACTAAACCTAAGCTCACTTT...	A	2.641e^-4	0.969	INTERGENIC
2L	22217584	2L_22217584_SNP [dm3] 2L_22217584_SNP [dm6]	C	G	2.644e^-4	0.969	INTERGENIC
2L	5883170	2L_5883170_SNP [dm3] 2L_5883170_SNP [dm6]	A	G	2.644e^-4	0.969	UPSTREAM CG44574 INTERGENIC
3R	19429892	3R_19429892_SNP [dm3] 3R_23604170_SNP [dm6]	T	G	2.645e^-4	0.969	INTRON CG10184
3L	11367891	3L_11367891_SNP [dm3] 3L_11374791_SNP [dm6]	T	A	2.646e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	8565659	2R_8565659_DEL [dm3] 2R_12678154_DEL [dm6]	AT	A	2.650e^-4	0.969	INTRON CG42708
2R	8565662	2R_8565662_MNP [dm3] 2R_12678157_MNP [dm6]	TCT	CAG	2.650e^-4	0.969	INTRON CG42708
2R	8565680	2R_8565680_SNP [dm3] 2R_12678175_SNP [dm6]	A	T	2.650e^-4	0.969	INTRON CG42708
3R	12798934	3R_12798934_SNP [dm3] 3R_16973212_SNP [dm6]	C	T	2.666e^-4	0.969	UPSTREAM Abd-B INTERGENIC
2L	20808278	2L_20808278_SNP [dm3] 2L_20808278_SNP [dm6]	G	A	2.671e^-4	0.969	INTRON CG9328
2L	4224296	2L_4224296_SNP [dm3] 2L_4224296_SNP [dm6]	T	C	2.674e^-4	0.969	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6797703	2L_6797703_SNP [dm3] 2L_6797703_SNP [dm6]	G	C	2.677e^-4	0.969	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16985685	2R_16985685_SNP [dm3] 2R_21098180_SNP [dm6]	A	G	2.682e^-4	0.969	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10825355	3L_10825355_SNP [dm3] 3L_10832255_SNP [dm6]	A	G	2.690e^-4	0.969	INTERGENIC
3L	10762573	3L_10762573_SNP [dm3] 3L_10769473_SNP [dm6]	T	G	2.699e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17402248	3L_17402248_SNP [dm3] 3L_17409148_SNP [dm6]	G	A	2.709e^-4	0.969	INTRON blot	TF binding site mE1_TFBS_cad
3R	14059419	3R_14059419_SNP [dm3] 3R_18233697_SNP [dm6]	T	A	2.711e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs
3L	2399382	3L_2399382_SNP [dm3] 3L_2399382_SNP [dm6]	G	C	2.716e^-4	0.969	INTRON CG45186
2L	1447410	2L_1447410_SNP [dm3] 2L_1447410_SNP [dm6]	G	T	2.718e^-4	0.969	INTERGENIC
2L	334096	2L_334096_SNP [dm3] 2L_334096_SNP [dm6]	G	T	2.724e^-4	0.969	INTRON Plc21C	TF binding site mE1_TFBS_inv
X	14524277	X_14524277_SNP [dm3] X_14630244_SNP [dm6]	G	A	2.730e^-4	0.969	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9553572	2L_9553572_SNP [dm3] 2L_9553572_SNP [dm6]	A	T	2.736e^-4	0.969	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8785223	2R_8785223_SNP [dm3] 2R_12897718_SNP [dm6]	A	C	2.737e^-4	0.969	SPLICE_SITE_REGION vg INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1691726	2R_1691726_SNP [dm3] 2R_5804221_SNP [dm6]	G	A	2.745e^-4	0.969	UPSTREAM dpr12 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17537129	2L_17537129_SNP [dm3] 2L_17537129_SNP [dm6]	T	A	2.753e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7565778	2R_7565778_SNP [dm3] 2R_11678273_SNP [dm6]	G	A	2.755e^-4	0.969	SYNONYMOUS_CODING Roc2 DOWNSTREAM Tret1-2
3R	25649421	3R_25649421_SNP [dm3] 3R_29823699_SNP [dm6]	C	T	2.760e^-4	0.969	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6541151	X_6541151_SNP [dm3] X_6647118_SNP [dm6]	C	G	2.764e^-4	0.969	INTRON pigs	TF binding site mE1_TFBS_chinmo
3R	18479686	3R_18479686_SNP [dm3] 3R_22653964_SNP [dm6]	C	G	2.766e^-4	0.969	INTRON CG45058
3R	21880025	3R_21880025_SNP [dm3] 3R_26054303_SNP [dm6]	A	C	2.770e^-4	0.969	UTR_3_PRIME Dak1 DOWNSTREAM Vps2
3L	3606638	3L_3606638_SNP [dm3] 3L_3606638_SNP [dm6]	G	T	2.771e^-4	0.969	INTRON Eip63E
2L	1580566	2L_1580566_SNP [dm3] 2L_1580566_SNP [dm6]	G	A	2.776e^-4	0.969	INTRON haf
2R	8565682	2R_8565682_SNP [dm3] 2R_12678177_SNP [dm6]	T	C	2.776e^-4	0.969	INTRON CG42708
2R	8565688	2R_8565688_INS [dm3] 2R_12678183_INS [dm6]	A	AGGT	2.776e^-4	0.969	INTRON CG42708
2R	8565696	2R_8565696_SNP [dm3] 2R_12678191_SNP [dm6]	A	G	2.776e^-4	0.969	INTRON CG42708
X	4317053	X_4317053_SNP [dm3] X_4423020_SNP [dm6]	T	C	2.778e^-4	0.969	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15434813	2R_15434813_SNP [dm3] 2R_19547308_SNP [dm6]	G	T	2.785e^-4	0.969	UPSTREAM sm INTRON sm
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	2.790e^-4	0.969	INTRON CG18088
3L	2433914	3L_2433914_SNP [dm3] 3L_2433914_SNP [dm6]	C	A	2.794e^-4	0.969	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5231770	3L_5231770_SNP [dm3] 3L_5238670_SNP [dm6]	T	A	2.794e^-4	0.969	INTRON shep
2R	9577640	2R_9577640_SNP [dm3] 2R_13690135_SNP [dm6]	C	T	2.814e^-4	0.969	INTRON fas
2R	8565675	2R_8565675_SNP [dm3] 2R_12678170_SNP [dm6]	C	A	2.827e^-4	0.969	INTRON CG42708
3L	6839639	3L_6839639_SNP [dm3] 3L_6846539_SNP [dm6]	T	A	2.828e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12959430	3L_12959430_SNP [dm3] 3L_12966330_SNP [dm6]	C	T	2.833e^-4	0.969	UPSTREAM Or69a INTRON Or69a
2R	13814467	2R_13814467_SNP [dm3] 2R_17926962_SNP [dm6]	A	G	2.833e^-4	0.969	DOWNSTREAM Elk INTERGENIC
2L	14869703	2L_14869703_SNP [dm3] 2L_14869703_SNP [dm6]	G	A	2.837e^-4	0.969	DOWNSTREAM CG4480 INTERGENIC
3L	10762496	3L_10762496_DEL [dm3] 3L_10769396_DEL [dm6]	TGTATTT	T	2.842e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	333346	2L_333346_SNP [dm3] 2L_333346_SNP [dm6]	T	C	2.858e^-4	0.969	INTRON Plc21C	TF binding site mE1_TFBS_cad
X	12870657	X_12870657_SNP [dm3] X_12976624_SNP [dm6]	A	G	2.862e^-4	0.969	UPSTREAM CG12716 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18738718	2R_18738718_SNP [dm3] 2R_22851195_SNP [dm6]	C	A	2.865e^-4	0.969	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
2R	8565667	2R_8565667_SNP [dm3] 2R_12678162_SNP [dm6]	G	T	2.877e^-4	0.969	INTRON CG42708
2R	7368327	2R_7368327_DEL [dm3] 2R_11480822_DEL [dm6]	GTAATTTTCAG...	G	2.880e^-4	0.969	INTRON inv
2R	5910620	2R_5910620_SNP [dm3] 2R_10023115_SNP [dm6]	C	A	2.885e^-4	0.969	INTRON Pka-R2
3L	7056869	3L_7056869_SNP [dm3] 3L_7063769_SNP [dm6]	T	C	2.895e^-4	0.969	INTRON CG8641
2R	5918703	2R_5918703_SNP [dm3] 2R_10031198_SNP [dm6]	C	A	2.897e^-4	0.969	SYNONYMOUS_CODING CG1407 UTR_3_PRIME CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
3R	5142200	3R_5142200_DEL [dm3] 3R_9316478_DEL [dm6]	TGCCATAGCT	T	2.899e^-4	0.969	INTRON CG8861
2L	7332914	2L_7332914_SNP [dm3] 2L_7332914_SNP [dm6]	T	A	2.901e^-4	0.969	UPSTREAM Wnt6 INTERGENIC
2L	1580568	2L_1580568_SNP [dm3] 2L_1580568_SNP [dm6]	G	A	2.901e^-4	0.969	INTRON haf
2L	9369098	2L_9369098_SNP [dm3] 2L_9369098_SNP [dm6]	T	C	2.909e^-4	0.969	DOWNSTREAM CG34181 INTERGENIC
3L	12852556	3L_12852556_SNP [dm3] 3L_12859456_SNP [dm6]	C	T	2.923e^-4	0.969	SYNONYMOUS_CODING CG32107
2L	13847382	2L_13847382_SNP [dm3] 2L_13847382_SNP [dm6]	C	T	2.949e^-4	0.969	SYNONYMOUS_CODING CG7916 UPSTREAM CG7953 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19063516	2R_19063516_SNP [dm3] 2R_23175993_SNP [dm6]	A	G	2.951e^-4	0.969	INTRON CG34371
X	17334745	X_17334745_SNP [dm3] X_17440712_SNP [dm6]	A	C	2.981e^-4	0.969	INTRON CG12994
3R	13891949	3R_13891949_SNP [dm3] 3R_18066227_SNP [dm6]	C	A	2.982e^-4	0.969	INTERGENIC
2L	283754	2L_283754_INS [dm3] 2L_283754_INS [dm6]	C	CATAC	2.985e^-4	0.969	UTR_3_PRIME CG3625 UPSTREAM CG11601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14929922	2R_14929922_SNP [dm3] 2R_19042417_SNP [dm6]	G	C	2.990e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7455323	3L_7455323_SNP [dm3] 3L_7462223_SNP [dm6]	A	G	2.998e^-4	0.969	INTERGENIC
3L	10292451	3L_10292451_SNP [dm3] 3L_10299351_SNP [dm6]	G	C	3.005e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	8565694	2R_8565694_SNP [dm3] 2R_12678189_SNP [dm6]	A	G	3.016e^-4	0.969	INTRON CG42708
3L	11109649	3L_11109649_SNP [dm3] 3L_11116549_SNP [dm6]	C	T	3.019e^-4	0.969	INTRON fd68A
3L	17402263	3L_17402263_SNP [dm3] 3L_17409163_SNP [dm6]	A	T	3.021e^-4	0.969	INTRON blot	TF binding site mE1_TFBS_cad
3L	10566478	3L_10566478_SNP [dm3] 3L_10573378_SNP [dm6]	G	A	3.028e^-4	0.969	INTRON A2bp1
2R	10840313	2R_10840313_SNP [dm3] 2R_14952808_SNP [dm6]	T	G	3.033e^-4	0.969	INTRON aPKC
2R	6543031	2R_6543031_SNP [dm3] 2R_10655526_SNP [dm6]	A	C	3.046e^-4	0.969	INTERGENIC
X	11830641	X_11830641_SNP [dm3] X_11936608_SNP [dm6]	C	T	3.053e^-4	0.969	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9578144	2L_9578144_SNP [dm3] 2L_9578144_SNP [dm6]	T	A	3.055e^-4	0.969	UTR_3_PRIME CG31709 DOWNSTREAM CG31709	regulatory region REDfly_CRMs
2R	16986049	2R_16986049_SNP [dm3] 2R_21098544_SNP [dm6]	T	C	3.056e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	6557335	X_6557335_SNP [dm3] X_6663302_SNP [dm6]	A	G	3.058e^-4	0.969	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	17402272	3L_17402272_SNP [dm3] 3L_17409172_SNP [dm6]	A	G	3.058e^-4	0.969	INTRON blot	TF binding site mE1_TFBS_cad
3L	1469480	3L_1469480_SNP [dm3] 3L_1469480_SNP [dm6]	C	A	3.068e^-4	0.969	DOWNSTREAM rho INTRON Ptp61F
2L	2287718	2L_2287718_SNP [dm3] 2L_2287718_SNP [dm6]	A	T	3.071e^-4	0.969	SYNONYMOUS_CODING CG42658 UPSTREAM CG31681 DOWNSTREAM CG17237
2L	1523293	2L_1523293_SNP [dm3] 2L_1523293_SNP [dm6]	C	T	3.085e^-4	0.969	SYNONYMOUS_CODING Or22b
X	14524715	X_14524715_SNP [dm3] X_14630682_SNP [dm6]	G	A	3.093e^-4	0.969	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11398750	2R_11398750_SNP [dm3] 2R_15511245_SNP [dm6]	A	T	3.119e^-4	0.969	UPSTREAM GalNAc-T1 INTERGENIC
2R	5064904	2R_5064904_SNP [dm3] 2R_9177399_SNP [dm6]	A	T	3.133e^-4	0.969	UPSTREAM Rme-8 DOWNSTREAM ltd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16741655	3L_16741655_SNP [dm3] 3L_16748555_SNP [dm6]	T	A	3.140e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16986567	2R_16986567_SNP [dm3] 2R_21099062_SNP [dm6]	C	T	3.151e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2L	272806	2L_272806_SNP [dm3] 2L_272806_SNP [dm6]	C	A	3.158e^-4	0.969	NON_SYNONYMOUS_CODING mbm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8552301	2L_8552301_SNP [dm3] 2L_8552301_SNP [dm6]	G	A	3.159e^-4	0.969	INTRON Sema-1a
X	9390816	X_9390816_SNP [dm3] X_9496783_SNP [dm6]	T	G	3.160e^-4	0.969	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21122548	2L_21122548_SNP [dm3] 2L_21122548_SNP [dm6]	A	G	3.165e^-4	0.969	INTRON Nhe2
X	19501643	X_19501643_SNP [dm3] X_19607610_SNP [dm6]	A	T	3.167e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	6797736	2L_6797736_SNP [dm3] 2L_6797736_SNP [dm6]	T	G	3.170e^-4	0.969	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22707677	3R_22707677_SNP [dm3] 3R_26881955_SNP [dm6]	T	C	3.174e^-4	0.969	UTR_5_PRIME T48 UPSTREAM ro	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13823378	2R_13823378_SNP [dm3] 2R_17935873_SNP [dm6]	T	C	3.178e^-4	0.969	INTERGENIC
2L	340737	2L_340737_SNP [dm3] 2L_340737_SNP [dm6]	G	C	3.182e^-4	0.969	NON_SYNONYMOUS_CODING Plc21C
2L	314200	2L_314200_SNP [dm3] 2L_314200_SNP [dm6]	T	C	3.190e^-4	0.969	INTRON Plc21C	TF binding site mE1_TFBS_inv
2L	22247152	2L_22247152_SNP [dm3] 2L_22247152_SNP [dm6]	C	T	3.193e^-4	0.969	UTR_3_PRIME RpL21 DOWNSTREAM CG3262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10792436	3L_10792436_SNP [dm3] 3L_10799336_SNP [dm6]	G	A	3.203e^-4	0.969	INTERGENIC
2L	6821216	2L_6821216_SNP [dm3] 2L_6821216_SNP [dm6]	A	G	3.204e^-4	0.969	UPSTREAM sens-2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5927893	2L_5927893_SNP [dm3] 2L_5927893_SNP [dm6]	T	C	3.210e^-4	0.969	INTRON dsf
2L	9030557	2L_9030557_SNP [dm3] 2L_9030557_SNP [dm6]	C	G	3.211e^-4	0.969	INTRON CG9582 & 1 other
2R	8565697	2R_8565697_SNP [dm3] 2R_12678192_SNP [dm6]	T	G	3.215e^-4	0.969	INTRON CG42708
2L	3720614	2L_3720614_SNP [dm3] 2L_3720614_SNP [dm6]	G	A	3.221e^-4	0.969	UPSTREAM Shaw INTRON Shaw
2L	14342164	2L_14342164_SNP [dm3] 2L_14342164_SNP [dm6]	T	A	3.223e^-4	0.969	UTR_5_PRIME CG33090 INTRON CG33090
X	17035908	X_17035908_SNP [dm3] X_17141875_SNP [dm6]	C	A	3.234e^-4	0.969	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
3L	2034119	3L_2034119_SNP [dm3] 3L_2034119_SNP [dm6]	T	A	3.246e^-4	0.969	INTERGENIC
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	3.256e^-4	0.969	INTRON VGlut
2R	19501816	2R_19501816_SNP [dm3] 2R_23614293_SNP [dm6]	C	A	3.258e^-4	0.969	INTRON CG17664 & 1 other
X	9999654	X_9999654_SNP [dm3] X_10105621_SNP [dm6]	A	C	3.259e^-4	0.969	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	22161491	2L_22161491_SNP [dm3] 2L_22161491_SNP [dm6]	T	C	3.261e^-4	0.969	DOWNSTREAM CG42748 INTRON CG42748
2L	17540596	2L_17540596_SNP [dm3] 2L_17540596_SNP [dm6]	G	T	3.273e^-4	0.969	INTERGENIC
2L	11676585	2L_11676585_SNP [dm3] 2L_11676585_SNP [dm6]	G	A	3.277e^-4	0.969	INTERGENIC
X	19506217	X_19506217_SNP [dm3] X_19612184_SNP [dm6]	G	C	3.283e^-4	0.969	SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5217227	2R_5217227_SNP [dm3] 2R_9329722_SNP [dm6]	C	T	3.289e^-4	0.969	INTRON CG13954 & 1 other
3L	10571813	3L_10571813_SNP [dm3] 3L_10578713_SNP [dm6]	G	T	3.291e^-4	0.969	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4222355	X_4222355_SNP [dm3] X_4328322_SNP [dm6]	A	T	3.301e^-4	0.969	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
2L	8487339	2L_8487339_SNP [dm3] 2L_8487339_SNP [dm6]	A	C	3.303e^-4	0.969	NON_SYNONYMOUS_CODING d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20865321	3L_20865321_SNP [dm3] 3L_20872221_SNP [dm6]	G	A	3.305e^-4	0.969	INTRON CG32432
3R	24668438	3R_24668438_SNP [dm3] 3R_28842716_SNP [dm6]	A	G	3.310e^-4	0.969	UPSTREAM Apc INTRON Apc
3R	5156442	3R_5156442_SNP [dm3] 3R_9330720_SNP [dm6]	T	C	3.314e^-4	0.969	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3L	10638473	3L_10638473_SNP [dm3] 3L_10645373_SNP [dm6]	A	G	3.315e^-4	0.969	DOWNSTREAM CG14153 INTRON CG32066
2L	5882862	2L_5882862_SNP [dm3] 2L_5882862_SNP [dm6]	T	A	3.318e^-4	0.969	UPSTREAM CG44574 INTERGENIC
X	18979446	X_18979446_SNP [dm3] X_19085413_SNP [dm6]	G	A	3.329e^-4	0.969	INTERGENIC
4	642636	4_642636_DEL [dm3] 4_622010_DEL [dm6]	TGGTA	T	3.331e^-4	0.969	UTR_3_PRIME Eph
3R	26142331	3R_26142331_SNP [dm3] 3R_30316609_SNP [dm6]	A	G	3.336e^-4	0.969	INTRON hdc
3L	2034125	3L_2034125_SNP [dm3] 3L_2034125_SNP [dm6]	C	T	3.337e^-4	0.969	INTERGENIC
X	19510229	X_19510229_SNP [dm3] X_19616196_SNP [dm6]	G	T	3.348e^-4	0.969	UTR_5_PRIME CG14210 DOWNSTREAM Shawn & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8425523	2L_8425523_SNP [dm3] 2L_8425523_SNP [dm6]	G	C	3.366e^-4	0.969	INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens mE1_TFBS_Trl
2L	15019930	2L_15019930_SNP [dm3] 2L_15019930_SNP [dm6]	C	G	3.373e^-4	0.969	INTRON GABA-B-R1
3L	9546367	3L_9546367_SNP [dm3] 3L_9553267_SNP [dm6]	G	T	3.391e^-4	0.969	UTR_5_PRIME CG42673
3L	10989574	3L_10989574_SNP [dm3] 3L_10996474_SNP [dm6]	C	T	3.396e^-4	0.969	INTRON klu
X	14524468	X_14524468_SNP [dm3] X_14630435_SNP [dm6]	A	T	3.401e^-4	0.969	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	286647	2L_286647_SNP [dm3] 2L_286647_SNP [dm6]	T	A	3.403e^-4	0.969	UPSTREAM CG3625 DOWNSTREAM Amnionless INTRON CG3625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
2L	14135644	2L_14135644_SNP [dm3] 2L_14135644_SNP [dm6]	C	T	3.413e^-4	0.969	INTRON CG17341
3L	12298109	3L_12298109_SNP [dm3] 3L_12305009_SNP [dm6]	A	T	3.414e^-4	0.969	INTERGENIC
2L	17544115	2L_17544115_SNP [dm3] 2L_17544115_SNP [dm6]	C	A	3.417e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3823144	3L_3823144_SNP [dm3] 3L_3823144_SNP [dm6]	T	A	3.422e^-4	0.969	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16986615	2R_16986615_SNP [dm3] 2R_21099110_SNP [dm6]	G	T	3.423e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
X	4317149	X_4317149_SNP [dm3] X_4423116_SNP [dm6]	T	C	3.431e^-4	0.969	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	24116467	3R_24116467_SNP [dm3] 3R_28290745_SNP [dm6]	G	A	3.431e^-4	0.969	UPSTREAM Mst98Ca INTERGENIC
2R	16994592	2R_16994592_SNP [dm3] 2R_21107087_SNP [dm6]	C	T	3.435e^-4	0.969	INTRON ktub
2L	13066443	2L_13066443_SNP [dm3] 2L_13066443_SNP [dm6]	G	A	3.450e^-4	0.969	INTERGENIC
2L	11678060	2L_11678060_SNP [dm3] 2L_11678060_SNP [dm6]	G	A	3.450e^-4	0.969	INTERGENIC
3L	6806575	3L_6806575_SNP [dm3] 3L_6813475_SNP [dm6]	A	T	3.455e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_Kr
2L	7410783	2L_7410783_SNP [dm3] 2L_7410783_SNP [dm6]	T	A	3.458e^-4	0.969	UPSTREAM CG5181 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
X	16085083	X_16085083_SNP [dm3] X_16191050_SNP [dm6]	T	A	3.458e^-4	0.969	DOWNSTREAM mir-985 INTERGENIC
2L	22215330	2L_22215330_SNP [dm3] 2L_22215330_SNP [dm6]	G	T	3.462e^-4	0.969	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3125535	2L_3125535_SNP [dm3] 2L_3125535_SNP [dm6]	G	A	3.463e^-4	0.969	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6493229	3R_6493229_SNP [dm3] 3R_10667507_SNP [dm6]	A	T	3.478e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8287062	2L_8287062_SNP [dm3] 2L_8287062_SNP [dm6]	C	A	3.478e^-4	0.969	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	634603	2L_634603_SNP [dm3] 2L_634603_SNP [dm6]	A	G	3.481e^-4	0.969	INTERGENIC
3L	4342612	3L_4342612_SNP [dm3] 3L_4342612_SNP [dm6]	A	G	3.488e^-4	0.969	INTRON Cip4
3L	16997189	3L_16997189_SNP [dm3] 3L_17004089_SNP [dm6]	T	C	3.488e^-4	0.969	INTRON CG3764	TF binding site mE1_TFBS_Trl mE1_TFBS_zfh1
X	18979378	X_18979378_SNP [dm3] X_19085345_SNP [dm6]	A	T	3.495e^-4	0.969	INTERGENIC
2R	9563376	2R_9563376_SNP [dm3] 2R_13675871_SNP [dm6]	C	T	3.503e^-4	0.969	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18746767	2R_18746767_SNP [dm3] 2R_22859244_SNP [dm6]	A	G	3.506e^-4	0.969	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6701326	3L_6701326_SNP [dm3] 3L_6708226_SNP [dm6]	T	A	3.510e^-4	0.969	INTRON CG8519
2R	19774734	2R_19774734_SNP [dm3] 2R_23887211_SNP [dm6]	G	A	3.513e^-4	0.969	INTRON CG5597
2L	13932028	2L_13932028_SNP [dm3] 2L_13932028_SNP [dm6]	T	G	3.529e^-4	0.969	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
2L	5883174	2L_5883174_SNP [dm3] 2L_5883174_SNP [dm6]	C	G	3.530e^-4	0.969	UPSTREAM CG44574 INTERGENIC
3L	5231963	3L_5231963_SNP [dm3] 3L_5238863_SNP [dm6]	A	C	3.532e^-4	0.969	INTRON shep
3R	25038882	3R_25038882_SNP [dm3] 3R_29213160_SNP [dm6]	G	C	3.533e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	20865147	3L_20865147_SNP [dm3] 3L_20872047_SNP [dm6]	C	G	3.543e^-4	0.969	INTRON CG32432
2R	7311185	2R_7311185_SNP [dm3] 2R_11423680_SNP [dm6]	A	G	3.546e^-4	0.969	INTRON Drip
X	19500451	X_19500451_INS [dm3] X_19606418_INS [dm6]	A	ACATA	3.552e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12099161	2L_12099161_SNP [dm3] 2L_12099161_SNP [dm6]	G	A	3.554e^-4	0.969	SYNONYMOUS_CODING Ced-12	TF binding site mE1_TFBS_chinmo
2L	14342162	2L_14342162_SNP [dm3] 2L_14342162_SNP [dm6]	C	T	3.560e^-4	0.969	UTR_5_PRIME CG33090 INTRON CG33090
X	4317186	X_4317186_SNP [dm3] X_4423153_SNP [dm6]	A	T	3.566e^-4	0.969	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6735438	2R_6735438_SNP [dm3] 2R_10847933_SNP [dm6]	C	T	3.569e^-4	0.969	INTRON CG30015
2L	17546192	2L_17546192_SNP [dm3] 2L_17546192_SNP [dm6]	T	A	3.574e^-4	0.969	UPSTREAM CR45697 INTERGENIC
2R	5714087	2R_5714087_SNP [dm3] 2R_9826582_SNP [dm6]	A	C	3.575e^-4	0.969	SPLICE_SITE_DONOR dila NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	281613	2L_281613_SNP [dm3] 2L_281613_SNP [dm6]	T	C	3.578e^-4	0.969	UTR_3_PRIME smo DOWNSTREAM CG11601	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	289841	2L_289841_SNP [dm3] 2L_289841_SNP [dm6]	C	A	3.580e^-4	0.969	UPSTREAM Amnionless INTRON CG3625
2L	14014157	2L_14014157_SNP [dm3] 2L_14014157_SNP [dm6]	C	G	3.582e^-4	0.969	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	7007989	X_7007989_SNP [dm3] X_7113956_SNP [dm6]	C	T	3.583e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2034115	3L_2034115_SNP [dm3] 3L_2034115_SNP [dm6]	G	T	3.594e^-4	0.969	INTERGENIC
2L	10730118	2L_10730118_SNP [dm3] 2L_10730118_SNP [dm6]	T	C	3.594e^-4	0.969	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12688017	2R_12688017_SNP [dm3] 2R_16800512_SNP [dm6]	A	G	3.598e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3793664	3L_3793664_SNP [dm3] 3L_3793664_SNP [dm6]	A	G	3.608e^-4	0.969	INTRON CG32264
2L	22200062	2L_22200062_SNP [dm3] 2L_22200062_SNP [dm6]	T	A	3.612e^-4	0.969	INTRON Ir40a	transposable element FlyBase
X	4944927	X_4944927_SNP [dm3] X_5050894_SNP [dm6]	C	T	3.613e^-4	0.969	INTRON CR44833 & 1 other
2R	19141447	2R_19141447_SNP [dm3] 2R_23253924_SNP [dm6]	C	A	3.614e^-4	0.969	INTERGENIC
3R	15027738	3R_15027738_SNP [dm3] 3R_19202016_SNP [dm6]	C	T	3.615e^-4	0.969	DOWNSTREAM CG31475 INTERGENIC
X	16425817	X_16425817_SNP [dm3] X_16531784_SNP [dm6]	G	T	3.627e^-4	0.969	INTRON para	TF binding site BDTNP1_TFBS_dl
2L	12197507	2L_12197507_SNP [dm3] 2L_12197507_SNP [dm6]	T	C	3.633e^-4	0.969	INTRON aret
2L	13829423	2L_13829423_SNP [dm3] 2L_13829423_SNP [dm6]	G	C	3.634e^-4	0.969	UTR_5_PRIME Arpc1 UPSTREAM Orc5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	14685541	X_14685541_SNP [dm3] X_14791508_SNP [dm6]	T	C	3.638e^-4	0.969	SYNONYMOUS_CODING rut INTRON rut
3R	5307367	3R_5307367_INS [dm3] 3R_9481645_INS [dm6]	C	CC	3.648e^-4	0.969	INTRON CG16779
2R	18653915	2R_18653915_SNP [dm3] 2R_22766410_SNP [dm6]	A	G	3.657e^-4	0.969	DOWNSTREAM CG13527 INTRON CG42260
2L	6391592	2L_6391592_SNP [dm3] 2L_6391592_SNP [dm6]	G	T	3.660e^-4	0.969	INTRON CG42368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10827339	3L_10827339_SNP [dm3] 3L_10834239_SNP [dm6]	G	C	3.660e^-4	0.969	INTERGENIC
2L	2835504	2L_2835504_SNP [dm3] 2L_2835504_SNP [dm6]	T	G	3.663e^-4	0.969	SYNONYMOUS_CODING CG3119 DOWNSTREAM CG3119
3L	9655301	3L_9655301_SNP [dm3] 3L_9662201_SNP [dm6]	A	C	3.678e^-4	0.969	INTRON fry	TF binding site BDTNP1_TFBS_twi
3L	7923415	3L_7923415_SNP [dm3] 3L_7930315_SNP [dm6]	C	A	3.679e^-4	0.969	SYNONYMOUS_CODING syd
3R	26121524	3R_26121524_SNP [dm3] 3R_30295802_SNP [dm6]	G	A	3.684e^-4	0.969	INTRON hdc
2L	9553496	2L_9553496_SNP [dm3] 2L_9553496_SNP [dm6]	C	T	3.695e^-4	0.969	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14652647	3R_14652647_SNP [dm3] 3R_18826925_SNP [dm6]	C	T	3.696e^-4	0.969	INTRON CG18208
2L	14175374	2L_14175374_SNP [dm3] 2L_14175374_SNP [dm6]	C	A	3.701e^-4	0.969	INTRON CG43333
2R	7394089	2R_7394089_SNP [dm3] 2R_11506584_SNP [dm6]	A	T	3.705e^-4	0.969	INTRON inv
3L	18173383	3L_18173383_SNP [dm3] 3L_18180283_SNP [dm6]	A	G	3.706e^-4	0.969	INTRON W
X	21896548	X_21896548_SNP [dm3] X_22494712_SNP [dm6]	C	T	3.706e^-4	0.969	INTRON l_1_G0196	transposable element FlyBase
3L	10822100	3L_10822100_SNP [dm3] 3L_10829000_SNP [dm6]	C	T	3.717e^-4	0.969	INTERGENIC
2L	13825630	2L_13825630_SNP [dm3] 2L_13825630_SNP [dm6]	G	A	3.717e^-4	0.969	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	11367839	3L_11367839_SNP [dm3] 3L_11374739_SNP [dm6]	C	T	3.727e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	12315791	2R_12315791_SNP [dm3] 2R_16428286_SNP [dm6]	A	T	3.733e^-4	0.969	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2L	7137998	2L_7137998_SNP [dm3] 2L_7137998_SNP [dm6]	T	A	3.740e^-4	0.969	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9057007	2R_9057007_SNP [dm3] 2R_13169502_SNP [dm6]	T	C	3.752e^-4	0.969	SPLICE_SITE_REGION Spt-I INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	8437445	2R_8437445_SNP [dm3] 2R_12549940_SNP [dm6]	A	G	3.754e^-4	0.969	INTRON fra
2R	13792380	2R_13792380_SNP [dm3] 2R_17904875_SNP [dm6]	C	T	3.757e^-4	0.969	INTRON Elk
X	12654217	X_12654217_SNP [dm3] X_12760184_SNP [dm6]	A	T	3.758e^-4	0.969	DOWNSTREAM CG12717 INTRON ade5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	6292380	X_6292380_SNP [dm3] X_6398347_SNP [dm6]	A	T	3.759e^-4	0.969	INTERGENIC
2L	5883171	2L_5883171_SNP [dm3] 2L_5883171_SNP [dm6]	T	C	3.760e^-4	0.969	UPSTREAM CG44574 INTERGENIC
X	6541098	X_6541098_SNP [dm3] X_6647065_SNP [dm6]	G	A	3.763e^-4	0.969	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	5714073	2R_5714073_SNP [dm3] 2R_9826568_SNP [dm6]	A	G	3.778e^-4	0.969	NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13527841	2R_13527841_SNP [dm3] 2R_17640336_SNP [dm6]	G	T	3.779e^-4	0.969	INTERGENIC
2R	12687953	2R_12687953_SNP [dm3] 2R_16800448_SNP [dm6]	A	T	3.780e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	20133657	X_20133657_INS [dm3] X_20262631_INS [dm6]	A	ATTAGTACACAATA...	3.789e^-4	0.969	INTERGENIC
3L	10578925	3L_10578925_SNP [dm3] 3L_10585825_SNP [dm6]	G	A	3.790e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_cad
X	11830621	X_11830621_SNP [dm3] X_11936588_SNP [dm6]	T	C	3.797e^-4	0.969	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4316587	X_4316587_SNP [dm3] X_4422554_SNP [dm6]	A	G	3.799e^-4	0.969	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3760436	X_3760436_SNP [dm3] X_3866403_SNP [dm6]	T	C	3.804e^-4	0.969	INTRON yin	TF binding site mE1_TFBS_Trl
3R	6054265	3R_6054265_SNP [dm3] 3R_10228543_SNP [dm6]	G	C	3.805e^-4	0.969	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16537111	X_16537111_SNP [dm3] X_16643078_SNP [dm6]	G	A	3.807e^-4	0.969	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7177654	2L_7177654_SNP [dm3] 2L_7177654_SNP [dm6]	C	T	3.814e^-4	0.969	DOWNSTREAM CR44613 INTERGENIC
2L	15820945	2L_15820945_SNP [dm3] 2L_15820945_SNP [dm6]	T	A	3.817e^-4	0.969	INTERGENIC
2L	11292676	2L_11292676_SNP [dm3] 2L_11292676_SNP [dm6]	A	C	3.819e^-4	0.969	INTERGENIC
3L	2034271	3L_2034271_SNP [dm3] 3L_2034271_SNP [dm6]	T	A	3.820e^-4	0.969	INTERGENIC
2L	9523193	2L_9523193_SNP [dm3] 2L_9523193_SNP [dm6]	A	G	3.833e^-4	0.969	UTR_5_PRIME Oatp30B INTRON Oatp30B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	11109654	3L_11109654_SNP [dm3] 3L_11116554_SNP [dm6]	G	A	3.848e^-4	0.969	INTRON fd68A
3L	11109655	3L_11109655_SNP [dm3] 3L_11116555_SNP [dm6]	A	T	3.848e^-4	0.969	INTRON fd68A
2L	4185350	2L_4185350_SNP [dm3] 2L_4185350_SNP [dm6]	G	C	3.855e^-4	0.969	UPSTREAM CR44057 DOWNSTREAM CG31961 INTERGENIC
2L	329350	2L_329350_SNP [dm3] 2L_329350_SNP [dm6]	T	C	3.857e^-4	0.969	SYNONYMOUS_CODING CG43755 DOWNSTREAM CG31921 INTRON Plc21C
2R	5527723	2R_5527723_SNP [dm3] 2R_9640218_SNP [dm6]	G	A	3.865e^-4	0.969	INTRON Mmp2
2R	16079994	2R_16079994_SNP [dm3] 2R_20192489_SNP [dm6]	G	A	3.867e^-4	0.969	INTERGENIC
2L	283729	2L_283729_SNP [dm3] 2L_283729_SNP [dm6]	T	C	3.877e^-4	0.969	UTR_3_PRIME CG3625 UPSTREAM CG11601	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	5925455	2R_5925455_SNP [dm3] 2R_10037950_SNP [dm6]	C	T	3.885e^-4	0.969	INTRON oys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	22217940	2L_22217940_SNP [dm3] 2L_22217940_SNP [dm6]	A	T	3.886e^-4	0.969	INTERGENIC
3L	13181694	3L_13181694_SNP [dm3] 3L_13188594_SNP [dm6]	T	C	3.896e^-4	0.969	INTERGENIC
3L	12215942	3L_12215942_SNP [dm3] 3L_12222842_SNP [dm6]	G	C	3.900e^-4	0.969	INTRON app
2L	7185304	2L_7185304_SNP [dm3] 2L_7185304_SNP [dm6]	A	C	3.902e^-4	0.969	UTR_3_PRIME CG4495 DOWNSTREAM CG4496
2L	19249368	2L_19249368_SNP [dm3] 2L_19249368_SNP [dm6]	C	T	3.910e^-4	0.969	INTERGENIC
2L	13567719	2L_13567719_SNP [dm3] 2L_13567719_SNP [dm6]	T	C	3.916e^-4	0.969	INTRON kuz
3R	7589981	3R_7589981_SNP [dm3] 3R_11764259_SNP [dm6]	A	G	3.922e^-4	0.969	UTR_5_PRIME Lk6 DOWNSTREAM l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10458833	2L_10458833_SNP [dm3] 2L_10458833_SNP [dm6]	G	T	3.925e^-4	0.969	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17236255	2R_17236255_SNP [dm3] 2R_21348750_SNP [dm6]	C	T	3.928e^-4	0.969	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
3R	6910949	3R_6910949_SNP [dm3] 3R_11085227_SNP [dm6]	C	G	3.929e^-4	0.969	EXON CR44940
2L	5795340	2L_5795340_SNP [dm3] 2L_5795340_SNP [dm6]	C	A	3.934e^-4	0.969	INTRON CG9171
3R	23450597	3R_23450597_SNP [dm3] 3R_27624875_SNP [dm6]	C	T	3.951e^-4	0.969	INTRON Tusp & 1 other
3L	6915335	3L_6915335_SNP [dm3] 3L_6922235_SNP [dm6]	A	C	3.952e^-4	0.969	INTERGENIC
2R	17592866	2R_17592866_SNP [dm3] 2R_21705361_SNP [dm6]	T	C	3.954e^-4	0.969	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	14524463	X_14524463_SNP [dm3] X_14630430_SNP [dm6]	A	G	3.960e^-4	0.969	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5883188	2L_5883188_SNP [dm3] 2L_5883188_SNP [dm6]	T	A	3.983e^-4	0.969	UPSTREAM CG44574 INTERGENIC
X	3255099	X_3255099_DEL [dm3] X_3361066_DEL [dm6]	CATACTGTAGTTCGTTGGA...	C	3.997e^-4	0.969	INTERGENIC
3L	7088898	3L_7088898_INS [dm3] 3L_7095798_INS [dm6]	T	TC	3.997e^-4	0.969	INTRON form3	TF binding site BDTNP1_TFBS_da
3R	25270204	3R_25270204_SNP [dm3] 3R_29444482_SNP [dm6]	A	G	4.000e^-4	0.969	INTRON Ptp99A
3R	6526051	3R_6526051_SNP [dm3] 3R_10700329_SNP [dm6]	G	A	4.001e^-4	0.969	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3473821	3L_3473821_SNP [dm3] 3L_3473821_SNP [dm6]	C	T	4.020e^-4	0.969	INTRON CG42324
3L	12298068	3L_12298068_SNP [dm3] 3L_12304968_SNP [dm6]	C	T	4.024e^-4	0.969	INTERGENIC
2L	3720596	2L_3720596_SNP [dm3] 2L_3720596_SNP [dm6]	A	G	4.028e^-4	0.969	UPSTREAM Shaw INTRON Shaw
2L	8070415	2L_8070415_SNP [dm3] 2L_8070415_SNP [dm6]	G	A	4.034e^-4	0.969	INTRON poe
2L	17745214	2L_17745214_SNP [dm3] 2L_17745214_SNP [dm6]	T	C	4.040e^-4	0.969	INTRON CadN
2L	22215361	2L_22215361_SNP [dm3] 2L_22215361_SNP [dm6]	A	C	4.057e^-4	0.969	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4240182	3L_4240182_SNP [dm3] 3L_4240182_SNP [dm6]	T	C	4.059e^-4	0.969	UTR_5_PRIME CG14997 UPSTREAM CG14997 EXON CR45738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17895254	X_17895254_SNP [dm3] X_18001221_SNP [dm6]	T	A	4.065e^-4	0.969	INTRON Sh
3L	17919245	3L_17919245_SNP [dm3] 3L_17926145_SNP [dm6]	A	G	4.082e^-4	0.969	INTERGENIC
2R	18514205	2R_18514205_SNP [dm3] 2R_22626700_SNP [dm6]	G	C	4.084e^-4	0.969	INTRON CG33143
2L	399172	2L_399172_SNP [dm3] 2L_399172_SNP [dm6]	C	T	4.088e^-4	0.969	INTRON CG4213
X	20953931	X_20953931_SNP [dm3] X_21082904_SNP [dm6]	A	T	4.096e^-4	0.969	DOWNSTREAM bves INTERGENIC
2R	6735435	2R_6735435_SNP [dm3] 2R_10847930_SNP [dm6]	C	A	4.100e^-4	0.969	INTRON CG30015
3L	2580089	3L_2580089_SNP [dm3] 3L_2580089_SNP [dm6]	G	C	4.102e^-4	0.969	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4873505	2R_4873505_SNP [dm3] 2R_8986000_SNP [dm6]	G	A	4.106e^-4	0.969	UPSTREAM CG8213 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1826418	3L_1826418_SNP [dm3] 3L_1826418_SNP [dm6]	A	G	4.107e^-4	0.969	INTRON Cpr62Ba	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	11519724	2R_11519724_SNP [dm3] 2R_15632219_SNP [dm6]	A	G	4.109e^-4	0.969	INTRON CG42524
2R	8785170	2R_8785170_SNP [dm3] 2R_12897665_SNP [dm6]	A	G	4.118e^-4	0.969	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1305159	2L_1305159_INS [dm3] 2L_1305159_INS [dm6]	T	TT	4.124e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2337683	2L_2337683_SNP [dm3] 2L_2337683_SNP [dm6]	G	C	4.126e^-4	0.969	INTRON CG9967 & 1 other
3L	12991937	3L_12991937_SNP [dm3] 3L_12998837_SNP [dm6]	G	C	4.127e^-4	0.969	INTERGENIC
3R	13891963	3R_13891963_SNP [dm3] 3R_18066241_SNP [dm6]	G	A	4.128e^-4	0.969	INTERGENIC
2L	5264245	2L_5264245_SNP [dm3] 2L_5264245_SNP [dm6]	G	C	4.130e^-4	0.969	INTRON tkv & 1 other
3L	2855494	3L_2855494_SNP [dm3] 3L_2855494_SNP [dm6]	C	G	4.135e^-4	0.969	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3091635	3L_3091635_SNP [dm3] 3L_3091635_SNP [dm6]	C	T	4.138e^-4	0.969	SYNONYMOUS_CODING Cht7 DOWNSTREAM snRNA:U5:63BC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12654077	X_12654077_SNP [dm3] X_12760044_SNP [dm6]	A	T	4.140e^-4	0.969	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	21103661	2L_21103661_SNP [dm3] 2L_21103661_SNP [dm6]	T	C	4.151e^-4	0.969	NON_SYNONYMOUS_CODING CG9257 UPSTREAM Nhe2 EXON CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2R	9056996	2R_9056996_SNP [dm3] 2R_13169491_SNP [dm6]	T	G	4.151e^-4	0.969	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2L	14781171	2L_14781171_SNP [dm3] 2L_14781171_SNP [dm6]	A	G	4.173e^-4	0.969	DOWNSTREAM CR15280 INTERGENIC
2L	6079863	2L_6079863_SNP [dm3] 2L_6079863_SNP [dm6]	A	C	4.177e^-4	0.969	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9466968	3L_9466968_SNP [dm3] 3L_9473868_SNP [dm6]	A	G	4.183e^-4	0.969	INTRON CG44838	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	4.184e^-4	0.969	INTERGENIC
3L	11102992	3L_11102992_SNP [dm3] 3L_11109892_SNP [dm6]	C	T	4.185e^-4	0.969	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19496919	X_19496919_SNP [dm3] X_19602886_SNP [dm6]	G	T	4.186e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5892607	2R_5892607_SNP [dm3] 2R_10005102_SNP [dm6]	A	C	4.187e^-4	0.969	INTRON Pka-R2
2L	285011	2L_285011_SNP [dm3] 2L_285011_SNP [dm6]	A	T	4.194e^-4	0.969	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1444388	2L_1444388_SNP [dm3] 2L_1444388_SNP [dm6]	A	G	4.199e^-4	0.969	DOWNSTREAM CG43402 INTERGENIC
2L	4227622	2L_4227622_SNP [dm3] 2L_4227622_SNP [dm6]	T	G	4.200e^-4	0.969	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	14453671	3R_14453671_SNP [dm3] 3R_18627949_SNP [dm6]	A	T	4.208e^-4	0.969	DOWNSTREAM tRNA:CR31228 INTRON qin
2L	7103532	2L_7103532_SNP [dm3] 2L_7103532_SNP [dm6]	C	A	4.213e^-4	0.969	INTRON Pvf3
3L	4238711	3L_4238711_SNP [dm3] 3L_4238711_SNP [dm6]	T	C	4.214e^-4	0.969	INTERGENIC
3L	636033	3L_636033_SNP [dm3] 3L_636033_SNP [dm6]	A	T	4.222e^-4	0.969	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6557331	X_6557331_SNP [dm3] X_6663298_SNP [dm6]	A	G	4.223e^-4	0.969	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	2034108	3L_2034108_SNP [dm3] 3L_2034108_SNP [dm6]	A	C	4.224e^-4	0.969	INTERGENIC
2L	21200879	2L_21200879_SNP [dm3] 2L_21200879_SNP [dm6]	G	C	4.224e^-4	0.969	UPSTREAM CG31624 DOWNSTREAM CG31988 INTERGENIC	transposable element FlyBase
X	5639506	X_5639506_SNP [dm3] X_5745473_SNP [dm6]	C	T	4.225e^-4	0.969	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	5422971	2L_5422971_SNP [dm3] 2L_5422971_SNP [dm6]	G	T	4.231e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18085361	3L_18085361_SNP [dm3] 3L_18092261_SNP [dm6]	T	A	4.239e^-4	0.969	INTRON CG13698
3L	9561429	3L_9561429_SNP [dm3] 3L_9568329_SNP [dm6]	C	T	4.246e^-4	0.969	INTRON CG42673
2L	22218125	2L_22218125_SNP [dm3] 2L_22218125_SNP [dm6]	T	C	4.254e^-4	0.969	INTERGENIC
3L	10769631	3L_10769631_SNP [dm3] 3L_10776531_SNP [dm6]	C	A	4.258e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19063530	2R_19063530_SNP [dm3] 2R_23176007_SNP [dm6]	G	A	4.259e^-4	0.969	INTRON CG34371
3R	14453937	3R_14453937_SNP [dm3] 3R_18628215_SNP [dm6]	G	A	4.267e^-4	0.969	DOWNSTREAM tRNA:CR31228 & 1 other INTRON qin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10194366	3R_10194366_SNP [dm3] 3R_14368644_SNP [dm6]	G	A	4.269e^-4	0.969	INTRON NK7.1	TF binding site BDTNP1_TFBS_prd
X	13872525	X_13872525_SNP [dm3] X_13978492_SNP [dm6]	T	A	4.271e^-4	0.969	INTRON mamo
3L	15714895	3L_15714895_SNP [dm3] 3L_15721795_SNP [dm6]	A	G	4.279e^-4	0.969	UTR_3_PRIME comm DOWNSTREAM comm
2R	20632561	2R_20632561_SNP [dm3] 2R_24745038_SNP [dm6]	G	A	4.280e^-4	0.969	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	8565683	2R_8565683_INS [dm3] 2R_12678178_INS [dm6]	T	TGCG	4.282e^-4	0.969	INTRON CG42708
2R	8565687	2R_8565687_SNP [dm3] 2R_12678182_SNP [dm6]	A	T	4.282e^-4	0.969	INTRON CG42708
2L	20296967	2L_20296967_SNP [dm3] 2L_20296967_SNP [dm6]	A	G	4.282e^-4	0.969	EXON CR43414
2L	22112338	2L_22112338_SNP [dm3] 2L_22112338_SNP [dm6]	T	C	4.289e^-4	0.969	INTERGENIC	transposable element FlyBase
2R	5934353	2R_5934353_SNP [dm3] 2R_10046848_SNP [dm6]	A	T	4.292e^-4	0.969	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	17510733	2L_17510733_SNP [dm3] 2L_17510733_SNP [dm6]	A	G	4.308e^-4	0.969	SYNONYMOUS_CODING Dhc36C
3L	6806768	3L_6806768_SNP [dm3] 3L_6813668_SNP [dm6]	T	A	4.313e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	4.314e^-4	0.969	INTRON form3
2R	6735465	2R_6735465_SNP [dm3] 2R_10847960_SNP [dm6]	C	G	4.322e^-4	0.969	INTRON CG30015
3L	7345344	3L_7345344_SNP [dm3] 3L_7352244_SNP [dm6]	T	C	4.322e^-4	0.969	SYNONYMOUS_CODING qm
3L	4278546	3L_4278546_SNP [dm3] 3L_4278546_SNP [dm6]	A	G	4.324e^-4	0.969	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12063941	2L_12063941_SNP [dm3] 2L_12063941_SNP [dm6]	A	G	4.337e^-4	0.969	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2L	330215	2L_330215_SNP [dm3] 2L_330215_SNP [dm6]	T	C	4.342e^-4	0.969	NON_SYNONYMOUS_CODING CG31921 UPSTREAM CG43755 INTRON Plc21C	TF binding site mE1_TFBS_cad
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	4.343e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22217958	2L_22217958_SNP [dm3] 2L_22217958_SNP [dm6]	T	G	4.344e^-4	0.969	INTERGENIC
3R	25399229	3R_25399229_SNP [dm3] 3R_29573507_SNP [dm6]	C	T	4.347e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19502144	X_19502144_SNP [dm3] X_19608111_SNP [dm6]	C	T	4.349e^-4	0.969	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	22278060	2L_22278060_SNP [dm3] 2L_22278060_SNP [dm6]	C	A	4.351e^-4	0.969	INTERGENIC
X	19509750	X_19509750_SNP [dm3] X_19615717_SNP [dm6]	T	G	4.354e^-4	0.969	UPSTREAM CG14210 DOWNSTREAM Shawn & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21076742	2L_21076742_SNP [dm3] 2L_21076742_SNP [dm6]	A	G	4.357e^-4	0.969	INTRON tadr
2L	7929510	2L_7929510_SNP [dm3] 2L_7929510_SNP [dm6]	C	T	4.361e^-4	0.969	INTRON Snoo
2R	5897455	2R_5897455_SNP [dm3] 2R_10009950_SNP [dm6]	A	T	4.364e^-4	0.969	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9959620	2R_9959620_SNP [dm3] 2R_14072115_SNP [dm6]	C	T	4.364e^-4	0.969	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	12191738	3L_12191738_SNP [dm3] 3L_12198638_SNP [dm6]	C	A	4.365e^-4	0.969	SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
3L	3052138	3L_3052138_SNP [dm3] 3L_3052138_SNP [dm6]	A	T	4.365e^-4	0.969	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314426	2R_12314426_SNP [dm3] 2R_16426921_SNP [dm6]	T	C	4.370e^-4	0.969	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14528961	3R_14528961_SNP [dm3] 3R_18703239_SNP [dm6]	C	T	4.372e^-4	0.969	INTERGENIC
2R	11403500	2R_11403500_SNP [dm3] 2R_15515995_SNP [dm6]	A	T	4.373e^-4	0.969	UTR_3_PRIME Khc-73 DOWNSTREAM GalNAc-T1
2L	20808250	2L_20808250_SNP [dm3] 2L_20808250_SNP [dm6]	C	T	4.376e^-4	0.969	INTRON CG9328
2R	16987009	2R_16987009_SNP [dm3] 2R_21099504_SNP [dm6]	C	A	4.389e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25618677	3R_25618677_SNP [dm3] 3R_29792955_SNP [dm6]	C	A	4.389e^-4	0.969	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_chinmo
2R	12693410	2R_12693410_SNP [dm3] 2R_16805905_SNP [dm6]	G	T	4.394e^-4	0.969	INTERGENIC
3R	6922035	3R_6922035_SNP [dm3] 3R_11096313_SNP [dm6]	G	A	4.395e^-4	0.969	INTERGENIC
2L	7177607	2L_7177607_SNP [dm3] 2L_7177607_SNP [dm6]	C	A	4.398e^-4	0.969	DOWNSTREAM CR44613 INTERGENIC
3L	7002479	3L_7002479_SNP [dm3] 3L_7009379_SNP [dm6]	T	C	4.399e^-4	0.969	INTRON Mp
2L	6079850	2L_6079850_SNP [dm3] 2L_6079850_SNP [dm6]	G	T	4.417e^-4	0.969	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6079853	2L_6079853_SNP [dm3] 2L_6079853_SNP [dm6]	A	T	4.417e^-4	0.969	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15889866	2R_15889866_SNP [dm3] 2R_20002361_SNP [dm6]	T	A	4.418e^-4	0.969	INTERGENIC
3L	12770186	3L_12770186_SNP [dm3] 3L_12777086_SNP [dm6]	T	A	4.423e^-4	0.969	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3L	10827333	3L_10827333_SNP [dm3] 3L_10834233_SNP [dm6]	A	C	4.426e^-4	0.969	INTERGENIC
3L	4239990	3L_4239990_SNP [dm3] 3L_4239990_SNP [dm6]	G	C	4.428e^-4	0.969	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26476220	3R_26476220_SNP [dm3] 3R_30650498_SNP [dm6]	G	C	4.431e^-4	0.969	SYNONYMOUS_CODING CG34433 DOWNSTREAM CG34432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13447514	2L_13447514_SNP [dm3] 2L_13447514_SNP [dm6]	A	G	4.437e^-4	0.969	DOWNSTREAM Hsp60D INTRON CG42784
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	4.437e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs
3L	16822262	3L_16822262_SNP [dm3] 3L_16829162_SNP [dm6]	C	T	4.452e^-4	0.969	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17919211	3L_17919211_DEL [dm3] 3L_17926111_DEL [dm6]	TA	T	4.458e^-4	0.969	INTERGENIC
2R	12687487	2R_12687487_SNP [dm3] 2R_16799982_SNP [dm6]	C	A	4.458e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	8435111	2R_8435111_SNP [dm3] 2R_12547606_SNP [dm6]	C	A	4.461e^-4	0.969	INTRON fra
X	10087652	X_10087652_INS [dm3] X_10193619_INS [dm6]	T	TT	4.461e^-4	0.969	UTR_3_PRIME CG43902 INTRON CR44894
2R	18777847	2R_18777847_SNP [dm3] 2R_22890324_SNP [dm6]	T	G	4.473e^-4	0.969	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2R	16292629	2R_16292629_SNP [dm3] 2R_20405124_SNP [dm6]	C	G	4.474e^-4	0.969	INTERGENIC
X	6557463	X_6557463_INS [dm3] X_6663430_INS [dm6]	T	AGGAAAG	4.475e^-4	0.969	INTRON Ctr1A
2R	3867761	2R_3867761_SNP [dm3] 2R_7980256_SNP [dm6]	A	G	4.477e^-4	0.969	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19853866	2L_19853866_SNP [dm3] 2L_19853866_SNP [dm6]	G	A	4.488e^-4	0.969	INTRON sick
X	3880718	X_3880718_SNP [dm3] X_3986685_SNP [dm6]	T	C	4.490e^-4	0.969	INTERGENIC
3L	12298060	3L_12298060_SNP [dm3] 3L_12304960_SNP [dm6]	T	G	4.493e^-4	0.969	INTERGENIC
3L	12991939	3L_12991939_SNP [dm3] 3L_12998839_SNP [dm6]	A	G	4.505e^-4	0.969	INTERGENIC
X	19884051	X_19884051_SNP [dm3] X_19990018_SNP [dm6]	G	A	4.510e^-4	0.969	INTERGENIC
X	10087700	X_10087700_SNP [dm3] X_10193667_SNP [dm6]	A	G	4.513e^-4	0.969	UTR_3_PRIME CG43902 INTRON CR44894
3L	12321659	3L_12321659_SNP [dm3] 3L_12328559_SNP [dm6]	A	C	4.513e^-4	0.969	UPSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1327510	2R_1327510_SNP [dm3] 2R_5440005_SNP [dm6]	A	G	4.515e^-4	0.969	INTRON laccase2
3L	10661758	3L_10661758_SNP [dm3] 3L_10668658_SNP [dm6]	G	A	4.518e^-4	0.969	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	4185405	2L_4185405_SNP [dm3] 2L_4185405_SNP [dm6]	C	A	4.521e^-4	0.969	DOWNSTREAM CG31961 EXON CR44057
2L	20935281	2L_20935281_SNP [dm3] 2L_20935281_SNP [dm6]	C	T	4.524e^-4	0.969	INTERGENIC
3R	21827667	3R_21827667_SNP [dm3] 3R_26001945_SNP [dm6]	T	C	4.530e^-4	0.969	INTRON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21121874	2L_21121874_SNP [dm3] 2L_21121874_SNP [dm6]	C	T	4.531e^-4	0.969	DOWNSTREAM Nhe2 INTRON Nhe2
3L	10018414	3L_10018414_SNP [dm3] 3L_10025314_SNP [dm6]	C	T	4.533e^-4	0.969	INTRON dpr6
2R	17152509	2R_17152509_SNP [dm3] 2R_21265004_SNP [dm6]	A	T	4.533e^-4	0.969	UTR_3_PRIME CG30391 INTRON Rgk3
2L	9040223	2L_9040223_SNP [dm3] 2L_9040223_SNP [dm6]	T	C	4.534e^-4	0.969	INTERGENIC
2L	3631141	2L_3631141_SNP [dm3] 2L_3631141_SNP [dm6]	C	A	4.537e^-4	0.969	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19044105	X_19044105_SNP [dm3] X_19150072_SNP [dm6]	T	C	4.544e^-4	0.969	INTRON RhoGAP18B
2R	11038840	2R_11038840_SNP [dm3] 2R_15151335_SNP [dm6]	C	T	4.557e^-4	0.969	INTERGENIC
3L	2684980	3L_2684980_SNP [dm3] 3L_2684980_SNP [dm6]	T	C	4.558e^-4	0.969	INTRON Fife
3R	25146231	3R_25146231_SNP [dm3] 3R_29320509_SNP [dm6]	T	G	4.558e^-4	0.969	UPSTREAM Cnx99A INTERGENIC
X	20901827	X_20901827_SNP [dm3] X_21030800_SNP [dm6]	C	T	4.558e^-4	0.969	SYNONYMOUS_CODING CG1529	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	8222317	X_8222317_SNP [dm3] X_8328284_SNP [dm6]	T	A	4.562e^-4	0.969	INTRON nAChRalpha3
2L	634595	2L_634595_SNP [dm3] 2L_634595_SNP [dm6]	T	C	4.571e^-4	0.969	INTERGENIC
2R	15298816	2R_15298816_SNP [dm3] 2R_19411311_SNP [dm6]	G	A	4.577e^-4	0.969	UTR_5_PRIME hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17036128	X_17036128_SNP [dm3] X_17142095_SNP [dm6]	T	C	4.581e^-4	0.969	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
3R	14586245	3R_14586245_SNP [dm3] 3R_18760523_SNP [dm6]	A	G	4.586e^-4	0.969	SYNONYMOUS_CODING CG7720
2R	12687722	2R_12687722_SNP [dm3] 2R_16800217_SNP [dm6]	C	T	4.587e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3481967	3L_3481967_SNP [dm3] 3L_3481967_SNP [dm6]	A	C	4.593e^-4	0.969	INTRON CG42324
3L	7269868	3L_7269868_SNP [dm3] 3L_7276768_SNP [dm6]	C	T	4.601e^-4	0.969	INTRON unc-13-4A
2R	11519697	2R_11519697_SNP [dm3] 2R_15632192_SNP [dm6]	T	C	4.613e^-4	0.969	INTRON CG42524
3R	5157771	3R_5157771_SNP [dm3] 3R_9332049_SNP [dm6]	G	T	4.620e^-4	0.969	UPSTREAM CG16749 DOWNSTREAM CG8866 INTERGENIC
2L	22207444	2L_22207444_SNP [dm3] 2L_22207444_SNP [dm6]	G	A	4.624e^-4	0.969	INTRON Ir40a	transposable element FlyBase
2L	13447473	2L_13447473_SNP [dm3] 2L_13447473_SNP [dm6]	A	C	4.647e^-4	0.969	DOWNSTREAM Hsp60D INTRON CG42784
2R	12544048	2R_12544048_SNP [dm3] 2R_16656543_SNP [dm6]	A	G	4.651e^-4	0.969	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
3L	10588231	3L_10588231_DEL [dm3] 3L_10595131_DEL [dm6]	GCCG	G	4.659e^-4	0.969	INTERGENIC
2R	16102643	2R_16102643_SNP [dm3] 2R_20215138_SNP [dm6]	T	C	4.662e^-4	0.969	INTERGENIC
2R	8187855	2R_8187855_SNP [dm3] 2R_12300350_SNP [dm6]	C	T	4.664e^-4	0.969	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11931557	2L_11931557_SNP [dm3] 2L_11931557_SNP [dm6]	A	G	4.665e^-4	0.969	INTERGENIC
X	10948548	X_10948548_SNP [dm3] X_11054515_SNP [dm6]	G	A	4.667e^-4	0.969	UPSTREAM CG1552 INTERGENIC
3L	11102967	3L_11102967_SNP [dm3] 3L_11109867_SNP [dm6]	T	C	4.670e^-4	0.969	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7412398	2L_7412398_SNP [dm3] 2L_7412398_SNP [dm6]	C	T	4.678e^-4	0.969	UPSTREAM chm DOWNSTREAM CG15818 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	19063736	2R_19063736_SNP [dm3] 2R_23176213_SNP [dm6]	C	T	4.680e^-4	0.969	SYNONYMOUS_CODING CG34371
3L	12192973	3L_12192973_SNP [dm3] 3L_12199873_SNP [dm6]	T	G	4.681e^-4	0.969	DOWNSTREAM CG11529 & 1 other INTERGENIC
2R	5905206	2R_5905206_DEL [dm3] 2R_10017701_DEL [dm6]	TGACAATAAATCAAAGGTCC...	T	4.689e^-4	0.969	INTRON Pka-R2	TF binding site mE1_TFBS_kn
2R	5934317	2R_5934317_SNP [dm3] 2R_10046812_SNP [dm6]	T	C	4.689e^-4	0.969	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	6089583	2L_6089583_SNP [dm3] 2L_6089583_SNP [dm6]	A	G	4.700e^-4	0.969	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	13773923	3R_13773923_SNP [dm3] 3R_17948201_SNP [dm6]	T	C	4.701e^-4	0.969	INTRON cpo
2R	7986884	2R_7986884_SNP [dm3] 2R_12099379_SNP [dm6]	C	T	4.705e^-4	0.969	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11102990	3L_11102990_SNP [dm3] 3L_11109890_SNP [dm6]	G	A	4.711e^-4	0.969	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13822091	2L_13822091_SNP [dm3] 2L_13822091_SNP [dm6]	G	A	4.715e^-4	0.969	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6052667	3L_6052667_SNP [dm3] 3L_6059567_SNP [dm6]	A	C	4.716e^-4	0.969	UPSTREAM CG6592 DOWNSTREAM CR45441 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_run
3L	19497550	3L_19497550_SNP [dm3] 3L_19504450_SNP [dm6]	G	A	4.716e^-4	0.969	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3R	14907221	3R_14907221_SNP [dm3] 3R_19081499_SNP [dm6]	A	C	4.720e^-4	0.969	INTRON cdi
3L	12780547	3L_12780547_SNP [dm3] 3L_12787447_SNP [dm6]	G	A	4.748e^-4	0.969	SYNONYMOUS_CODING Atg1
2R	17879966	2R_17879966_SNP [dm3] 2R_21992461_SNP [dm6]	A	G	4.751e^-4	0.969	INTRON CG34370
3R	6267352	3R_6267352_SNP [dm3] 3R_10441630_SNP [dm6]	A	C	4.752e^-4	0.969	INTERGENIC
3L	22662160	3L_22662160_DEL [dm3] 3L_22669060_DEL [dm6]	AGCCCAAGTTCCCAATTCA...	A	4.762e^-4	0.969	UPSTREAM CG14457 DOWNSTREAM mir-958 INTRON CR43270
3R	6910836	3R_6910836_SNP [dm3] 3R_11085114_SNP [dm6]	A	G	4.766e^-4	0.969	EXON CR44940
3R	21827449	3R_21827449_SNP [dm3] 3R_26001727_SNP [dm6]	G	A	4.768e^-4	0.969	DOWNSTREAM E_spl_mgamma-HLH INTRON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1537548	2L_1537548_INS [dm3] 2L_1537548_INS [dm6]	T	TT	4.793e^-4	0.969	INTERGENIC
3L	21308788	3L_21308788_SNP [dm3] 3L_21315688_SNP [dm6]	A	G	4.799e^-4	0.969	UTR_3_PRIME Pc
2R	16986435	2R_16986435_SNP [dm3] 2R_21098930_SNP [dm6]	C	A	4.816e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2R	9563464	2R_9563464_SNP [dm3] 2R_13675959_SNP [dm6]	A	G	4.817e^-4	0.969	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6794600	2L_6794600_SNP [dm3] 2L_6794600_SNP [dm6]	A	C	4.819e^-4	0.969	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19507605	X_19507605_SNP [dm3] X_19613572_SNP [dm6]	T	A	4.823e^-4	0.969	UPSTREAM Shawn INTRON Shawn & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2266917	X_2266917_SNP [dm3] X_2372884_SNP [dm6]	T	C	4.823e^-4	0.969	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
3L	5218402	3L_5218402_SNP [dm3] 3L_5225302_SNP [dm6]	G	T	4.830e^-4	0.969	INTRON shep
X	2557150	X_2557150_SNP [dm3] X_2663117_SNP [dm6]	T	A	4.830e^-4	0.969	INTRON sgg
3R	13892344	3R_13892344_SNP [dm3] 3R_18066622_SNP [dm6]	A	T	4.836e^-4	0.969	INTERGENIC
2L	4181016	2L_4181016_SNP [dm3] 2L_4181016_SNP [dm6]	A	G	4.836e^-4	0.969	INTERGENIC
2R	12252278	2R_12252278_SNP [dm3] 2R_16364773_SNP [dm6]	G	A	4.838e^-4	0.969	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711
3L	19212072	3L_19212072_SNP [dm3] 3L_19218972_SNP [dm6]	G	A	4.850e^-4	0.969	INTRON fz2
2L	6079871	2L_6079871_SNP [dm3] 2L_6079871_SNP [dm6]	T	A	4.853e^-4	0.969	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7929495	2L_7929495_SNP [dm3] 2L_7929495_SNP [dm6]	G	T	4.854e^-4	0.969	INTRON Snoo
2L	5495369	2L_5495369_SNP [dm3] 2L_5495369_SNP [dm6]	C	A	4.866e^-4	0.969	INTERGENIC
3L	20857987	3L_20857987_SNP [dm3] 3L_20864887_SNP [dm6]	C	G	4.870e^-4	0.969	INTRON CG32432
2R	16985655	2R_16985655_SNP [dm3] 2R_21098150_SNP [dm6]	T	C	4.870e^-4	0.969	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16227833	3L_16227833_SNP [dm3] 3L_16234733_SNP [dm6]	C	G	4.872e^-4	0.969	UTR_5_PRIME l_3_72Dp DOWNSTREAM Hsc20	TF binding site mE1_TFBS_inv
X	18979396	X_18979396_SNP [dm3] X_19085363_SNP [dm6]	A	G	4.873e^-4	0.969	INTERGENIC
2R	5586180	2R_5586180_SNP [dm3] 2R_9698675_SNP [dm6]	C	T	4.873e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7400346	3L_7400346_SNP [dm3] 3L_7407246_SNP [dm6]	A	T	4.886e^-4	0.969	DOWNSTREAM pncr015:3L INTERGENIC
2L	4224388	2L_4224388_SNP [dm3] 2L_4224388_SNP [dm6]	C	G	4.915e^-4	0.969	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5920946	2R_5920946_SNP [dm3] 2R_10033441_SNP [dm6]	G	A	4.916e^-4	0.969	NON_SYNONYMOUS_CODING CG12129 UPSTREAM CG1407	TF binding site mE1_TFBS_HSA
2L	7929504	2L_7929504_SNP [dm3] 2L_7929504_SNP [dm6]	T	A	4.917e^-4	0.969	INTRON Snoo
X	10896243	X_10896243_DEL [dm3] X_11002210_DEL [dm6]	ACACACACA	A	4.919e^-4	0.969	INTRON CG42339
3R	27471265	3R_27471265_SNP [dm3] 3R_31645543_SNP [dm6]	G	A	4.931e^-4	0.969	INTRON kek6
3R	27471266	3R_27471266_SNP [dm3] 3R_31645544_SNP [dm6]	G	A	4.931e^-4	0.969	INTRON kek6
3L	16420595	3L_16420595_SNP [dm3] 3L_16427495_SNP [dm6]	C	T	4.933e^-4	0.969	INTRON CG33158 & 1 other
2R	18533926	2R_18533926_SNP [dm3] 2R_22646421_SNP [dm6]	C	T	4.934e^-4	0.969	UPSTREAM CG2852 DOWNSTREAM CG30195 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	12959277	3L_12959277_SNP [dm3] 3L_12966177_SNP [dm6]	A	G	4.939e^-4	0.969	UPSTREAM Or69a INTRON Or69a
3L	10026209	3L_10026209_SNP [dm3] 3L_10033109_SNP [dm6]	C	G	4.946e^-4	0.969	INTRON dpr6
2L	5883173	2L_5883173_SNP [dm3] 2L_5883173_SNP [dm6]	T	C	4.949e^-4	0.969	UPSTREAM CG44574 INTERGENIC
3L	10824984	3L_10824984_SNP [dm3] 3L_10831884_SNP [dm6]	T	C	4.955e^-4	0.969	INTERGENIC
X	17895255	X_17895255_SNP [dm3] X_18001222_SNP [dm6]	G	A	4.956e^-4	0.969	INTRON Sh
2L	17563937	2L_17563937_SNP [dm3] 2L_17563937_SNP [dm6]	A	T	4.966e^-4	0.969	INTERGENIC
3L	2433913	3L_2433913_SNP [dm3] 3L_2433913_SNP [dm6]	C	T	4.972e^-4	0.969	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807112	3L_12807112_SNP [dm3] 3L_12814012_SNP [dm6]	C	G	4.973e^-4	0.969	UTR_5_PRIME CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6090020	2L_6090020_SNP [dm3] 2L_6090020_SNP [dm6]	A	T	4.979e^-4	0.969	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	10458834	2L_10458834_SNP [dm3] 2L_10458834_SNP [dm6]	C	T	4.979e^-4	0.969	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11026376	2R_11026376_SNP [dm3] 2R_15138871_SNP [dm6]	G	T	4.987e^-4	0.969	SYNONYMOUS_CODING chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5785917	2R_5785917_SNP [dm3] 2R_9898412_SNP [dm6]	C	G	4.990e^-4	0.969	UTR_3_PRIME CG30007 DOWNSTREAM CG1441 & 1 other
2L	3180353	2L_3180353_SNP [dm3] 2L_3180353_SNP [dm6]	G	A	5.005e^-4	0.969	INTRON CG34393
3L	830591	3L_830591_SNP [dm3] 3L_830591_SNP [dm6]	G	T	5.006e^-4	0.969	UPSTREAM CR45184 & 2 others INTRON CG13900	TF binding site mE1_TFBS_sens
3L	3820356	3L_3820356_SNP [dm3] 3L_3820356_SNP [dm6]	A	C	5.041e^-4	0.969	INTRON enc
X	3122832	X_3122832_SNP [dm3] X_3228799_SNP [dm6]	A	T	5.043e^-4	0.969	INTRON dnc
X	19515963	X_19515963_SNP [dm3] X_19621930_SNP [dm6]	G	A	5.046e^-4	0.969	UTR_3_PRIME NAA20 UPSTREAM CG14221 INTRON NAA20
2L	20026662	2L_20026662_SNP [dm3] 2L_20026662_SNP [dm6]	C	G	5.047e^-4	0.969	UPSTREAM CG10659 INTERGENIC
2L	7929487	2L_7929487_SNP [dm3] 2L_7929487_SNP [dm6]	C	G	5.047e^-4	0.969	INTRON Snoo
3R	19227475	3R_19227475_SNP [dm3] 3R_23401753_SNP [dm6]	G	A	5.047e^-4	0.969	DOWNSTREAM CG17380 INTERGENIC
2R	17236267	2R_17236267_SNP [dm3] 2R_21348762_SNP [dm6]	A	G	5.054e^-4	0.969	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
2R	14087114	2R_14087114_SNP [dm3] 2R_18199609_SNP [dm6]	A	G	5.057e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11102966	3L_11102966_SNP [dm3] 3L_11109866_SNP [dm6]	C	G	5.067e^-4	0.969	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5065826	2L_5065826_DEL [dm3] 2L_5065826_DEL [dm6]	CTTCACAAC	C	5.075e^-4	0.969	UPSTREAM qtc INTRON qtc
2L	7177651	2L_7177651_SNP [dm3] 2L_7177651_SNP [dm6]	C	T	5.087e^-4	0.969	DOWNSTREAM CR44613 INTERGENIC
2R	10542465	2R_10542465_SNP [dm3] 2R_14654960_SNP [dm6]	A	T	5.088e^-4	0.969	INTERGENIC
2R	5915601	2R_5915601_SNP [dm3] 2R_10028096_SNP [dm6]	C	T	5.090e^-4	0.969	SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
3L	7056890	3L_7056890_SNP [dm3] 3L_7063790_SNP [dm6]	A	G	5.092e^-4	0.969	INTRON CG8641
2R	16988372	2R_16988372_SNP [dm3] 2R_21100867_SNP [dm6]	C	T	5.093e^-4	0.969	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	14849427	2L_14849427_SNP [dm3] 2L_14849427_SNP [dm6]	T	G	5.107e^-4	0.969	UPSTREAM CG15279 INTRON CG15279
3R	20348523	3R_20348523_SNP [dm3] 3R_24522801_SNP [dm6]	A	G	5.112e^-4	0.969	NON_SYNONYMOUS_CODING CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site mE1_TFBS_chinmo
2L	1042166	2L_1042166_SNP [dm3] 2L_1042166_SNP [dm6]	T	G	5.115e^-4	0.969	INTRON IA-2
2L	844611	2L_844611_SNP [dm3] 2L_844611_SNP [dm6]	C	T	5.117e^-4	0.969	INTRON drongo
2L	12377486	2L_12377486_DEL [dm3] 2L_12377486_DEL [dm6]	AACCAAA	A	5.120e^-4	0.969	INTRON bru-2
2L	21101230	2L_21101230_SNP [dm3] 2L_21101230_SNP [dm6]	C	G	5.124e^-4	0.969	SYNONYMOUS_CODING CG12050
2L	3137361	2L_3137361_SNP [dm3] 2L_3137361_SNP [dm6]	A	G	5.125e^-4	0.969	INTRON toc
2L	7927935	2L_7927935_SNP [dm3] 2L_7927935_SNP [dm6]	T	G	5.136e^-4	0.969	INTRON Snoo
3L	17398524	3L_17398524_SNP [dm3] 3L_17405424_SNP [dm6]	A	G	5.136e^-4	0.969	UPSTREAM blot INTRON blot
3R	20394874	3R_20394874_SNP [dm3] 3R_24569152_SNP [dm6]	A	C	5.143e^-4	0.969	INTRON CG13624	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20122689	2L_20122689_SNP [dm3] 2L_20122689_SNP [dm6]	G	A	5.148e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12687425	2R_12687425_SNP [dm3] 2R_16799920_SNP [dm6]	C	T	5.149e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	19489863	3L_19489863_SNP [dm3] 3L_19496763_SNP [dm6]	G	A	5.154e^-4	0.969	START_GAINED CG9449 UTR_5_PRIME CG9449 UPSTREAM CG9449
2L	7875081	2L_7875081_SNP [dm3] 2L_7875081_SNP [dm6]	C	A	5.155e^-4	0.969	INTRON spz3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5765200	2L_5765200_SNP [dm3] 2L_5765200_SNP [dm6]	G	A	5.161e^-4	0.969	INTRON obst-E
3L	10792483	3L_10792483_SNP [dm3] 3L_10799383_SNP [dm6]	A	G	5.161e^-4	0.969	INTERGENIC
3L	5218302	3L_5218302_SNP [dm3] 3L_5225202_SNP [dm6]	C	T	5.167e^-4	0.969	INTRON shep
3L	10578924	3L_10578924_SNP [dm3] 3L_10585824_SNP [dm6]	C	T	5.169e^-4	0.969	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	19284551	2L_19284551_SNP [dm3] 2L_19284551_SNP [dm6]	A	G	5.169e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
X	17036107	X_17036107_SNP [dm3] X_17142074_SNP [dm6]	A	G	5.170e^-4	0.969	UTR_5_PRIME mei-218 UPSTREAM mei-218 INTRON mei-218 & 1 other
3L	6301821	3L_6301821_SNP [dm3] 3L_6308721_SNP [dm6]	G	T	5.175e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6091359	3R_6091359_SNP [dm3] 3R_10265637_SNP [dm6]	T	A	5.178e^-4	0.969	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10769677	3L_10769677_SNP [dm3] 3L_10776577_SNP [dm6]	A	G	5.179e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	5909959	2R_5909959_DEL [dm3] 2R_10022454_DEL [dm6]	CTTTC	C	5.194e^-4	0.969	INTRON Pka-R2
3L	10252904	3L_10252904_SNP [dm3] 3L_10259804_SNP [dm6]	A	C	5.195e^-4	0.969	INTERGENIC
2R	16985859	2R_16985859_SNP [dm3] 2R_21098354_SNP [dm6]	T	C	5.196e^-4	0.969	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

mn_Glycerol_Pooled phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results