DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.977e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2197 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6404817	3R_6404817_SNP [dm3] 3R_10579095_SNP [dm6]	A	C	3.299e^-7	0.618	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3L	4811585	3L_4811585_SNP [dm3] 3L_4811585_SNP [dm6]	C	A	1.048e^-6	0.627	SYNONYMOUS_CODING Dhc64C
X	17715708	X_17715708_DEL [dm3] X_17821675_DEL [dm6]	TGTTACT	T	1.506e^-6	0.627	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	17715695	X_17715695_SNP [dm3] X_17821662_SNP [dm6]	C	T	1.724e^-6	0.627	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	23998886	3R_23998886_SNP [dm3] 3R_28173164_SNP [dm6]	A	T	1.817e^-6	0.627	INTRON CG34354
3L	15081132	3L_15081132_INS [dm3] 3L_15088032_INS [dm6]	T	TTATTTGATTT...	2.154e^-6	0.627	INTRON cp309
3L	12626933	3L_12626933_SNP [dm3] 3L_12633833_SNP [dm6]	T	C	2.406e^-6	0.627	INTRON CR32111 EXON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17715730	X_17715730_SNP [dm3] X_17821697_SNP [dm6]	T	A	2.813e^-6	0.627	UTR_3_PRIME Socs16D
3L	1488622	3L_1488622_SNP [dm3] 3L_1488622_SNP [dm6]	T	C	3.210e^-6	0.627	UPSTREAM CR43701 & 1 other INTRON stet
3R	23998897	3R_23998897_DEL [dm3] 3R_28173175_DEL [dm6]	TT	T	3.918e^-6	0.627	INTRON CG34354
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	4.069e^-6	0.627	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	1070360	2L_1070360_SNP [dm3] 2L_1070360_SNP [dm6]	G	A	5.059e^-6	0.627	INTRON S	TF binding site mE1_TFBS_cad
3L	8366872	3L_8366872_SNP [dm3] 3L_8373772_SNP [dm6]	G	A	5.616e^-6	0.627	INTRON ImpE1
2L	17768131	2L_17768131_SNP [dm3] 2L_17768131_SNP [dm6]	C	T	5.802e^-6	0.627	INTRON CadN
2R	18399857	2R_18399857_SNP [dm3] 2R_22512352_SNP [dm6]	G	A	6.553e^-6	0.627	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6405090	3R_6405090_SNP [dm3] 3R_10579368_SNP [dm6]	C	T	6.881e^-6	0.627	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18399884	2R_18399884_SNP [dm3] 2R_22512379_SNP [dm6]	A	G	7.200e^-6	0.627	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10038229	3L_10038229_SNP [dm3] 3L_10045129_SNP [dm6]	C	T	7.652e^-6	0.627	INTRON dpr6
X	16222278	X_16222278_SNP [dm3] X_16328245_SNP [dm6]	G	A	7.891e^-6	0.627	UTR_3_PRIME CalpC DOWNSTREAM CG9919
2R	18399894	2R_18399894_SNP [dm3] 2R_22512389_SNP [dm6]	T	C	8.341e^-6	0.627	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	684965	2L_684965_DEL [dm3] 2L_684965_DEL [dm6]	TTCCTT	T	8.567e^-6	0.627	INTRON ds	TF binding site BDTNP1_TFBS_dl
3R	23669794	3R_23669794_SNP [dm3] 3R_27844072_SNP [dm6]	A	G	8.796e^-6	0.627	INTRON CG34353
3L	1488581	3L_1488581_SNP [dm3] 3L_1488581_SNP [dm6]	T	A	9.473e^-6	0.627	UPSTREAM CR43701 & 1 other INTRON stet
3R	16962199	3R_16962199_SNP [dm3] 3R_21136477_SNP [dm6]	C	T	9.525e^-6	0.627	UPSTREAM Ubpy INTRON Ubpy
2R	12041439	2R_12041439_SNP [dm3] 2R_16153934_SNP [dm6]	G	A	9.757e^-6	0.627	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5604059	X_5604059_SNP [dm3] X_5710026_SNP [dm6]	G	A	1.033e^-5	0.627	SYNONYMOUS_CODING CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6971370	3L_6971370_SNP [dm3] 3L_6978270_SNP [dm6]	T	A	1.049e^-5	0.627	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3257491	2R_3257491_SNP [dm3] 2R_7369986_SNP [dm6]	T	C	1.145e^-5	0.627	INTRON Dscam1
3R	21877137	3R_21877137_SNP [dm3] 3R_26051415_SNP [dm6]	A	G	1.204e^-5	0.627	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	21877167	3R_21877167_SNP [dm3] 3R_26051445_SNP [dm6]	A	G	1.235e^-5	0.627	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3L	13049594	3L_13049594_SNP [dm3] 3L_13056494_SNP [dm6]	G	A	1.313e^-5	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17996511	3L_17996511_SNP [dm3] 3L_18003411_SNP [dm6]	C	G	1.322e^-5	0.627	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	10697113	3L_10697113_SNP [dm3] 3L_10704013_SNP [dm6]	A	C	1.361e^-5	0.627	INTERGENIC
3R	24817233	3R_24817233_SNP [dm3] 3R_28991511_SNP [dm6]	G	C	1.365e^-5	0.627	INTERGENIC
2L	9983616	2L_9983616_SNP [dm3] 2L_9983616_SNP [dm6]	A	G	1.411e^-5	0.627	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	9983637	2L_9983637_SNP [dm3] 2L_9983637_SNP [dm6]	A	G	1.422e^-5	0.627	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	17749366	2L_17749366_SNP [dm3] 2L_17749366_SNP [dm6]	A	T	1.453e^-5	0.627	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13571655	3R_13571655_SNP [dm3] 3R_17745933_SNP [dm6]	G	A	1.455e^-5	0.627	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16991456	3R_16991456_SNP [dm3] 3R_21165734_SNP [dm6]	C	G	1.456e^-5	0.627	NON_SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
2R	3169429	2R_3169429_SNP [dm3] 2R_7281924_SNP [dm6]	A	G	1.483e^-5	0.627	UPSTREAM pwn DOWNSTREAM Incenp INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14150145	3L_14150145_SNP [dm3] 3L_14157045_SNP [dm6]	G	T	1.496e^-5	0.627	INTERGENIC	regulatory region REDfly_CRMs
2L	15990382	2L_15990382_SNP [dm3] 2L_15990382_SNP [dm6]	A	T	1.509e^-5	0.627	DOWNSTREAM CR43412 INTERGENIC
2L	1070334	2L_1070334_SNP [dm3] 2L_1070334_SNP [dm6]	G	A	1.545e^-5	0.627	INTRON S	TF binding site mE1_TFBS_cad
3L	1488578	3L_1488578_SNP [dm3] 3L_1488578_SNP [dm6]	A	G	1.566e^-5	0.627	UPSTREAM CR43701 & 1 other INTRON stet
3R	8935804	3R_8935804_SNP [dm3] 3R_13110082_SNP [dm6]	T	C	1.581e^-5	0.627	INTRON timeout
3L	13049597	3L_13049597_SNP [dm3] 3L_13056497_SNP [dm6]	A	G	1.592e^-5	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16962381	3R_16962381_SNP [dm3] 3R_21136659_SNP [dm6]	G	C	1.630e^-5	0.627	INTRON Ubpy
3L	12772601	3L_12772601_SNP [dm3] 3L_12779501_SNP [dm6]	C	T	1.639e^-5	0.627	SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_sens
3L	7587076	3L_7587076_SNP [dm3] 3L_7593976_SNP [dm6]	G	T	1.673e^-5	0.627	INTRON CG33275
2L	18792029	2L_18792029_SNP [dm3] 2L_18792029_SNP [dm6]	A	G	1.674e^-5	0.627	INTRON ham
2R	18394252	2R_18394252_SNP [dm3] 2R_22506747_SNP [dm6]	C	T	1.808e^-5	0.665	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	6328490	2L_6328490_SNP [dm3] 2L_6328490_SNP [dm6]	C	T	1.857e^-5	0.668	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
X	16230841	X_16230841_SNP [dm3] X_16336808_SNP [dm6]	C	T	1.946e^-5	0.668	INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11366640	3L_11366640_SNP [dm3] 3L_11373540_SNP [dm6]	T	A	1.960e^-5	0.668	INTERGENIC
3L	13560913	3L_13560913_INS [dm3] 3L_13567813_INS [dm6]	C	CC	1.973e^-5	0.668	INTRON bru-3
2R	9127159	2R_9127159_SNP [dm3] 2R_13239654_SNP [dm6]	T	A	1.996e^-5	0.668	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17713037	2L_17713037_SNP [dm3] 2L_17713037_SNP [dm6]	G	C	2.049e^-5	0.674	INTRON CadN
3L	16746813	3L_16746813_SNP [dm3] 3L_16753713_SNP [dm6]	G	T	2.280e^-5	0.7	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18290678	2L_18290678_SNP [dm3] 2L_18290678_SNP [dm6]	C	T	2.316e^-5	0.7	DOWNSTREAM CG43362 EXON CR44696
3R	6722618	3R_6722618_SNP [dm3] 3R_10896896_SNP [dm6]	T	C	2.344e^-5	0.7	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna
2L	18384190	2L_18384190_SNP [dm3] 2L_18384190_SNP [dm6]	C	T	2.356e^-5	0.7	INTRON Fas3	TF binding site mE1_TFBS_cad
2L	15990388	2L_15990388_SNP [dm3] 2L_15990388_SNP [dm6]	A	G	2.377e^-5	0.7	DOWNSTREAM CR43412 INTERGENIC
2L	18532549	2L_18532549_SNP [dm3] 2L_18532549_SNP [dm6]	A	C	2.387e^-5	0.7	UTR_3_PRIME Pde11 DOWNSTREAM Pde11 & 1 other
2L	14447668	2L_14447668_SNP [dm3] 2L_14447668_SNP [dm6]	T	C	2.391e^-5	0.7	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18508256	2L_18508256_SNP [dm3] 2L_18508256_SNP [dm6]	A	G	2.452e^-5	0.707	INTERGENIC
3L	9489943	3L_9489943_DEL [dm3] 3L_9496843_DEL [dm6]	TT	T	2.639e^-5	0.744	INTRON path
2R	8481932	2R_8481932_SNP [dm3] 2R_12594427_SNP [dm6]	T	G	2.696e^-5	0.744	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_dl
2R	3257560	2R_3257560_SNP [dm3] 2R_7370055_SNP [dm6]	C	T	2.762e^-5	0.744	INTRON Dscam1
3L	8374408	3L_8374408_SNP [dm3] 3L_8381308_SNP [dm6]	A	T	2.988e^-5	0.744	INTRON ImpE1
2R	8542587	2R_8542587_SNP [dm3] 2R_12655082_SNP [dm6]	C	A	2.997e^-5	0.744	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8646
2R	8542622	2R_8542622_SNP [dm3] 2R_12655117_SNP [dm6]	G	A	2.997e^-5	0.744	UPSTREAM CG8646 INTRON ZnT49B
2R	9127115	2R_9127115_SNP [dm3] 2R_13239610_SNP [dm6]	A	C	3.021e^-5	0.744	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17768323	2L_17768323_SNP [dm3] 2L_17768323_SNP [dm6]	G	A	3.034e^-5	0.744	INTRON CadN
3L	13633515	3L_13633515_SNP [dm3] 3L_13640415_SNP [dm6]	C	G	3.046e^-5	0.744	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	18547106	2L_18547106_SNP [dm3] 2L_18547106_SNP [dm6]	T	A	3.078e^-5	0.744	INTRON Pde11
3R	12516171	3R_12516171_SNP [dm3] 3R_16690449_SNP [dm6]	G	T	3.103e^-5	0.744	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16230647	X_16230647_SNP [dm3] X_16336614_SNP [dm6]	C	T	3.109e^-5	0.744	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9983576	2L_9983576_SNP [dm3] 2L_9983576_SNP [dm6]	A	G	3.224e^-5	0.744	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	6494423	3R_6494423_SNP [dm3] 3R_10668701_SNP [dm6]	C	T	3.242e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10697056	3L_10697056_SNP [dm3] 3L_10703956_SNP [dm6]	A	T	3.261e^-5	0.744	INTERGENIC
3R	3633523	3R_3633523_SNP [dm3] 3R_7807801_SNP [dm6]	A	T	3.273e^-5	0.744	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21877161	3R_21877161_SNP [dm3] 3R_26051439_SNP [dm6]	A	G	3.369e^-5	0.744	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
2L	7096505	2L_7096505_SNP [dm3] 2L_7096505_SNP [dm6]	T	C	3.381e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12660192	2R_12660192_SNP [dm3] 2R_16772687_SNP [dm6]	G	A	3.495e^-5	0.744	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6722250	3R_6722250_SNP [dm3] 3R_10896528_SNP [dm6]	C	T	3.500e^-5	0.744	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3R	9081589	3R_9081589_SNP [dm3] 3R_13255867_SNP [dm6]	C	T	3.579e^-5	0.744	INTRON Ace
2R	16239571	2R_16239571_SNP [dm3] 2R_20352066_SNP [dm6]	A	C	3.616e^-5	0.744	INTERGENIC
3R	13489923	3R_13489923_SNP [dm3] 3R_17664201_SNP [dm6]	C	A	3.665e^-5	0.744	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6980491	3R_6980491_SNP [dm3] 3R_11154769_SNP [dm6]	T	G	3.665e^-5	0.744	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Di
2R	17030247	2R_17030247_SNP [dm3] 2R_21142742_SNP [dm6]	G	C	3.682e^-5	0.744	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	27473879	3R_27473879_SNP [dm3] 3R_31648157_SNP [dm6]	T	A	3.688e^-5	0.744	INTRON kek6
2R	12660175	2R_12660175_SNP [dm3] 2R_16772670_SNP [dm6]	C	T	3.730e^-5	0.744	UTR_5_PRIME unc-104 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3633460	3R_3633460_SNP [dm3] 3R_7807738_SNP [dm6]	C	G	3.800e^-5	0.744	SYNONYMOUS_CODING CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1488505	3L_1488505_SNP [dm3] 3L_1488505_SNP [dm6]	C	T	3.821e^-5	0.744	SPLICE_SITE_REGION stet UTR_5_PRIME stet UPSTREAM CR43701 & 1 other	TF binding site mE1_TFBS_cad
3L	4242135	3L_4242135_SNP [dm3] 3L_4242135_SNP [dm6]	C	T	3.865e^-5	0.744	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	685855	2L_685855_SNP [dm3] 2L_685855_SNP [dm6]	G	C	3.886e^-5	0.744	INTRON ds
X	16230581	X_16230581_SNP [dm3] X_16336548_SNP [dm6]	C	A	3.903e^-5	0.744	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19037726	3R_19037726_SNP [dm3] 3R_23212004_SNP [dm6]	A	C	3.936e^-5	0.744	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	9127105	2R_9127105_SNP [dm3] 2R_13239600_SNP [dm6]	A	G	3.938e^-5	0.744	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16899116	3R_16899116_SNP [dm3] 3R_21073394_SNP [dm6]	C	T	4.016e^-5	0.744	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	4.018e^-5	0.744	INTRON ds
2L	18075085	2L_18075085_SNP [dm3] 2L_18075085_SNP [dm6]	C	A	4.114e^-5	0.744	INTERGENIC
2L	3492033	2L_3492033_SNP [dm3] 2L_3492033_SNP [dm6]	T	C	4.203e^-5	0.744	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18021992	3L_18021992_SNP [dm3] 3L_18028892_SNP [dm6]	C	G	4.216e^-5	0.744	INTRON Eip75B	TF binding site mE1_TFBS_HSA
2L	15854281	2L_15854281_SNP [dm3] 2L_15854281_SNP [dm6]	C	T	4.223e^-5	0.744	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
2L	9983633	2L_9983633_SNP [dm3] 2L_9983633_SNP [dm6]	A	G	4.253e^-5	0.744	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1488528	3L_1488528_SNP [dm3] 3L_1488528_SNP [dm6]	A	T	4.341e^-5	0.744	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site mE1_TFBS_cad
2L	7699334	2L_7699334_SNP [dm3] 2L_7699334_SNP [dm6]	T	C	4.386e^-5	0.744	INTRON Tep2	TF binding site mE1_TFBS_sens
X	2854783	X_2854783_SNP [dm3] X_2960750_SNP [dm6]	T	G	4.453e^-5	0.744	INTRON kirre & 1 other
3L	9489946	3L_9489946_SNP [dm3] 3L_9496846_SNP [dm6]	A	T	4.493e^-5	0.744	INTRON path
2R	3257580	2R_3257580_SNP [dm3] 2R_7370075_SNP [dm6]	T	C	4.586e^-5	0.744	INTRON Dscam1
2L	17783828	2L_17783828_SNP [dm3] 2L_17783828_SNP [dm6]	A	G	4.600e^-5	0.744	INTERGENIC
X	13321820	X_13321820_SNP [dm3] X_13427787_SNP [dm6]	G	T	4.789e^-5	0.744	INTERGENIC	TF binding site mE1_TFBS_inv
X	16231614	X_16231614_SNP [dm3] X_16337581_SNP [dm6]	G	A	4.904e^-5	0.744	INTRON Dsp1	TF binding site mE1_TFBS_cad
2L	5141994	2L_5141994_SNP [dm3] 2L_5141994_SNP [dm6]	C	T	4.934e^-5	0.744	INTRON Msp300
3R	8935762	3R_8935762_DEL [dm3] 3R_13110040_DEL [dm6]	CC	C	5.021e^-5	0.744	INTRON timeout
3L	11522059	3L_11522059_SNP [dm3] 3L_11528959_SNP [dm6]	G	C	5.045e^-5	0.744	INTRON Mob2
X	6934656	X_6934656_SNP [dm3] X_7040623_SNP [dm6]	G	A	5.053e^-5	0.744	UTR_5_PRIME CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	6976313	2L_6976313_SNP [dm3] 2L_6976313_SNP [dm6]	T	A	5.067e^-5	0.744	INTRON uif	TF binding site mE1_TFBS_cad
X	10505725	X_10505725_SNP [dm3] X_10611692_SNP [dm6]	A	G	5.073e^-5	0.744	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
X	2886487	X_2886487_SNP [dm3] X_2992454_SNP [dm6]	T	A	5.141e^-5	0.744	INTRON kirre
2L	17713619	2L_17713619_SNP [dm3] 2L_17713619_SNP [dm6]	G	A	5.205e^-5	0.744	INTRON CadN
3L	10953663	3L_10953663_SNP [dm3] 3L_10960563_SNP [dm6]	A	C	5.227e^-5	0.744	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16130895	X_16130895_SNP [dm3] X_16236862_SNP [dm6]	T	A	5.248e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	21960760	X_21960760_SNP [dm3] X_22558924_SNP [dm6]	T	C	5.324e^-5	0.744	INTERGENIC	transposable element FlyBase
3R	6455818	3R_6455818_SNP [dm3] 3R_10630096_SNP [dm6]	G	C	5.329e^-5	0.744	INTRON hth	TF binding site mE1_TFBS_cad
3L	10713165	3L_10713165_SNP [dm3] 3L_10720065_SNP [dm6]	C	T	5.372e^-5	0.744	INTERGENIC
2L	5142028	2L_5142028_SNP [dm3] 2L_5142028_SNP [dm6]	C	T	5.411e^-5	0.744	SYNONYMOUS_CODING Msp300
X	3810690	X_3810690_SNP [dm3] X_3916657_SNP [dm6]	A	C	5.477e^-5	0.744	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14150141	3L_14150141_SNP [dm3] 3L_14157041_SNP [dm6]	C	A	5.481e^-5	0.744	INTERGENIC	regulatory region REDfly_CRMs
2L	1068402	2L_1068402_SNP [dm3] 2L_1068402_SNP [dm6]	A	G	5.497e^-5	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13625581	3L_13625581_SNP [dm3] 3L_13632481_SNP [dm6]	G	C	5.503e^-5	0.744	INTRON bru-3
3L	10712957	3L_10712957_DEL [dm3] 3L_10719857_DEL [dm6]	TT	T	5.553e^-5	0.744	INTERGENIC
3L	13626419	3L_13626419_SNP [dm3] 3L_13633319_SNP [dm6]	A	G	5.569e^-5	0.744	INTRON bru-3
2R	1388493	2R_1388493_DEL [dm3] 2R_5500988_DEL [dm6]	AG	A	5.614e^-5	0.744	INTRON CG30438	transposable element FlyBase
3L	3513785	3L_3513785_SNP [dm3] 3L_3513785_SNP [dm6]	A	G	5.643e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8549137	3L_8549137_SNP [dm3] 3L_8556037_SNP [dm6]	C	G	5.677e^-5	0.744	INTRON rhea
3L	2021250	3L_2021250_SNP [dm3] 3L_2021250_SNP [dm6]	T	G	5.798e^-5	0.744	NON_SYNONYMOUS_CODING CG42357 DOWNSTREAM CG42356
2L	6328406	2L_6328406_SNP [dm3] 2L_6328406_SNP [dm6]	C	T	5.840e^-5	0.744	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4211889	3L_4211889_SNP [dm3] 3L_4211889_SNP [dm6]	C	G	5.843e^-5	0.744	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	10713186	3L_10713186_SNP [dm3] 3L_10720086_SNP [dm6]	A	T	5.850e^-5	0.744	INTERGENIC
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	5.865e^-5	0.744	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	5.865e^-5	0.744	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17857516	2L_17857516_SNP [dm3] 2L_17857516_SNP [dm6]	A	G	5.885e^-5	0.744	INTRON CadN2
3L	1495711	3L_1495711_SNP [dm3] 3L_1495711_SNP [dm6]	G	A	5.936e^-5	0.744	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	5.980e^-5	0.744	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	13074121	3R_13074121_SNP [dm3] 3R_17248399_SNP [dm6]	T	G	5.987e^-5	0.744	UPSTREAM beat-IIb INTRON beat-IIb
2L	18384200	2L_18384200_SNP [dm3] 2L_18384200_SNP [dm6]	T	G	6.061e^-5	0.744	INTRON Fas3	TF binding site mE1_TFBS_cad
2L	17769017	2L_17769017_SNP [dm3] 2L_17769017_SNP [dm6]	A	C	6.095e^-5	0.744	INTRON CadN
3R	16897008	3R_16897008_SNP [dm3] 3R_21071286_SNP [dm6]	T	G	6.228e^-5	0.744	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10713128	3L_10713128_SNP [dm3] 3L_10720028_SNP [dm6]	T	C	6.229e^-5	0.744	INTERGENIC
2L	18075115	2L_18075115_SNP [dm3] 2L_18075115_SNP [dm6]	G	A	6.242e^-5	0.744	INTERGENIC
3R	3633510	3R_3633510_DEL [dm3] 3R_7807788_DEL [dm6]	AGTTATACTT	A	6.253e^-5	0.744	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12532238	2R_12532238_SNP [dm3] 2R_16644733_SNP [dm6]	A	T	6.274e^-5	0.744	INTRON gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1488605	3L_1488605_SNP [dm3] 3L_1488605_SNP [dm6]	A	T	6.321e^-5	0.744	UPSTREAM CR43701 & 1 other INTRON stet
2L	13326891	2L_13326891_SNP [dm3] 2L_13326891_SNP [dm6]	A	T	6.363e^-5	0.744	INTRON CG43778
2L	10820336	2L_10820336_SNP [dm3] 2L_10820336_SNP [dm6]	C	T	6.414e^-5	0.744	NON_SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos
2R	8542118	2R_8542118_SNP [dm3] 2R_12654613_SNP [dm6]	T	C	6.462e^-5	0.744	SYNONYMOUS_CODING ZnT49B
3R	6958412	3R_6958412_SNP [dm3] 3R_11132690_SNP [dm6]	T	G	6.474e^-5	0.744	INTERGENIC
3R	24967299	3R_24967299_SNP [dm3] 3R_29141577_SNP [dm6]	T	C	6.509e^-5	0.744	INTRON CG14516
3L	8719789	3L_8719789_SNP [dm3] 3L_8726689_SNP [dm6]	G	C	6.593e^-5	0.744	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10713201	3L_10713201_SNP [dm3] 3L_10720101_SNP [dm6]	A	G	6.661e^-5	0.744	INTERGENIC
2L	6328088	2L_6328088_SNP [dm3] 2L_6328088_SNP [dm6]	T	C	6.712e^-5	0.744	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	6.736e^-5	0.744	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15868377	2L_15868377_SNP [dm3] 2L_15868377_SNP [dm6]	A	G	6.743e^-5	0.744	INTERGENIC
2L	18535787	2L_18535787_SNP [dm3] 2L_18535787_SNP [dm6]	A	G	6.783e^-5	0.744	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3R	20569274	3R_20569274_SNP [dm3] 3R_24743552_SNP [dm6]	G	A	6.819e^-5	0.744	SYNONYMOUS_CODING tok
3L	15661804	3L_15661804_SNP [dm3] 3L_15668704_SNP [dm6]	A	T	6.840e^-5	0.744	INTERGENIC
3L	17999051	3L_17999051_DEL [dm3] 3L_18005951_DEL [dm6]	GG	G	6.884e^-5	0.744	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	12096962	3L_12096962_SNP [dm3] 3L_12103862_SNP [dm6]	C	G	6.910e^-5	0.744	INTERGENIC
3L	12993337	3L_12993337_SNP [dm3] 3L_13000237_SNP [dm6]	A	C	6.919e^-5	0.744	INTERGENIC
2L	12298152	2L_12298152_SNP [dm3] 2L_12298152_SNP [dm6]	C	T	6.925e^-5	0.744	INTRON aret	TF binding site mE1_TFBS_inv
3L	10713020	3L_10713020_SNP [dm3] 3L_10719920_SNP [dm6]	A	T	6.987e^-5	0.744	INTERGENIC
3L	15690074	3L_15690074_SNP [dm3] 3L_15696974_SNP [dm6]	A	T	7.057e^-5	0.744	DOWNSTREAM comm2 INTERGENIC
X	10534970	X_10534970_SNP [dm3] X_10640937_SNP [dm6]	A	G	7.122e^-5	0.744	INTRON X11Lbeta
3L	4811428	3L_4811428_SNP [dm3] 3L_4811428_SNP [dm6]	T	C	7.149e^-5	0.744	SYNONYMOUS_CODING Dhc64C
3L	1488595	3L_1488595_SNP [dm3] 3L_1488595_SNP [dm6]	A	T	7.157e^-5	0.744	UPSTREAM CR43701 & 1 other INTRON stet
2L	18526120	2L_18526120_SNP [dm3] 2L_18526120_SNP [dm6]	G	T	7.218e^-5	0.744	INTRON CG10211
2L	6272257	2L_6272257_SNP [dm3] 2L_6272257_SNP [dm6]	C	A	7.218e^-5	0.744	DOWNSTREAM CR42735 INTRON Ddr
2R	17583854	2R_17583854_SNP [dm3] 2R_21696349_SNP [dm6]	C	T	7.280e^-5	0.744	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
3R	16890835	3R_16890835_DEL [dm3] 3R_21065113_DEL [dm6]	CCAGCTTC	C	7.455e^-5	0.744	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	15345679	3L_15345679_SNP [dm3] 3L_15352579_SNP [dm6]	A	G	7.470e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	534829	X_534829_SNP [dm3] X_640796_SNP [dm6]	C	G	7.570e^-5	0.744	SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo
3R	25545235	3R_25545235_SNP [dm3] 3R_29719513_SNP [dm6]	A	G	7.587e^-5	0.744	INTRON CG15506	regulatory region REDfly_CRMs
3L	13517497	3L_13517497_SNP [dm3] 3L_13524397_SNP [dm6]	T	C	7.598e^-5	0.744	UTR_3_PRIME bru-3
2L	683653	2L_683653_SNP [dm3] 2L_683653_SNP [dm6]	G	A	7.760e^-5	0.744	INTRON ds
3L	10712577	3L_10712577_SNP [dm3] 3L_10719477_SNP [dm6]	C	G	7.839e^-5	0.744	INTERGENIC
3L	10946195	3L_10946195_SNP [dm3] 3L_10953095_SNP [dm6]	G	C	7.894e^-5	0.744	INTERGENIC
2L	18075118	2L_18075118_SNP [dm3] 2L_18075118_SNP [dm6]	C	T	7.905e^-5	0.744	INTERGENIC
2R	19081360	2R_19081360_SNP [dm3] 2R_23193837_SNP [dm6]	G	A	8.034e^-5	0.744	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10713166	3L_10713166_DEL [dm3] 3L_10720066_DEL [dm6]	TAGCATTAAGC...	T	8.089e^-5	0.744	INTERGENIC
2R	14971023	2R_14971023_SNP [dm3] 2R_19083518_SNP [dm6]	T	A	8.100e^-5	0.744	INTRON 5-HT1A
3R	24967297	3R_24967297_SNP [dm3] 3R_29141575_SNP [dm6]	C	T	8.163e^-5	0.744	INTRON CG14516
2L	13814798	2L_13814798_SNP [dm3] 2L_13814798_SNP [dm6]	C	A	8.366e^-5	0.744	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14901780	2R_14901780_SNP [dm3] 2R_19014275_SNP [dm6]	A	G	8.399e^-5	0.744	INTERGENIC
3L	11526225	3L_11526225_SNP [dm3] 3L_11533125_SNP [dm6]	C	T	8.451e^-5	0.744	INTRON Mob2
3R	6722241	3R_6722241_SNP [dm3] 3R_10896519_SNP [dm6]	C	T	8.477e^-5	0.744	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3R	6957620	3R_6957620_SNP [dm3] 3R_11131898_SNP [dm6]	C	T	8.482e^-5	0.744	INTERGENIC
3L	4811528	3L_4811528_SNP [dm3] 3L_4811528_SNP [dm6]	C	G	8.565e^-5	0.744	INTRON Dhc64C
3L	17854170	3L_17854170_SNP [dm3] 3L_17861070_SNP [dm6]	C	G	8.592e^-5	0.744	DOWNSTREAM CG34002 INTERGENIC	transposable element FlyBase
3L	19205132	3L_19205132_SNP [dm3] 3L_19212032_SNP [dm6]	C	T	8.694e^-5	0.744	INTRON fz2
2R	3507859	2R_3507859_SNP [dm3] 2R_7620354_SNP [dm6]	C	T	8.760e^-5	0.744	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_chinmo
3R	16963192	3R_16963192_SNP [dm3] 3R_21137470_SNP [dm6]	G	T	8.762e^-5	0.744	SPLICE_SITE_REGION Ubpy UPSTREAM meigo INTRON Ubpy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20800398	3R_20800398_SNP [dm3] 3R_24974676_SNP [dm6]	A	T	8.778e^-5	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10713187	3L_10713187_SNP [dm3] 3L_10720087_SNP [dm6]	G	T	8.784e^-5	0.744	INTERGENIC
3L	1499562	3L_1499562_SNP [dm3] 3L_1499562_SNP [dm6]	C	T	8.818e^-5	0.744	UTR_5_PRIME pUf68 UPSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site mE1_TFBS_cad
2L	9273005	2L_9273005_SNP [dm3] 2L_9273005_SNP [dm6]	A	T	8.872e^-5	0.744	INTRON Ggamma30A
3R	23998889	3R_23998889_SNP [dm3] 3R_28173167_SNP [dm6]	G	C	8.930e^-5	0.744	INTRON CG34354
3L	17981522	3L_17981522_SNP [dm3] 3L_17988422_SNP [dm6]	G	T	8.968e^-5	0.744	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3633524	3R_3633524_DEL [dm3] 3R_7807802_DEL [dm6]	ACAATCATGAT...	A	9.062e^-5	0.744	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1188923	2L_1188923_SNP [dm3] 2L_1188923_SNP [dm6]	G	A	9.062e^-5	0.744	INTRON CG5001
2L	7096494	2L_7096494_SNP [dm3] 2L_7096494_SNP [dm6]	T	G	9.101e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16904153	3R_16904153_SNP [dm3] 3R_21078431_SNP [dm6]	A	G	9.121e^-5	0.744	INTRON HHEX
2R	12660264	2R_12660264_SNP [dm3] 2R_16772759_SNP [dm6]	C	A	9.228e^-5	0.744	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18075119	2L_18075119_DEL [dm3] 2L_18075119_DEL [dm6]	TTAA	T	9.272e^-5	0.744	INTERGENIC
2L	17762237	2L_17762237_SNP [dm3] 2L_17762237_SNP [dm6]	G	A	9.279e^-5	0.744	INTRON CadN
3L	10955990	3L_10955990_INS [dm3] 3L_10962890_INS [dm6]	A	AG	9.343e^-5	0.744	DOWNSTREAM CR45249 INTERGENIC
3L	10713183	3L_10713183_DEL [dm3] 3L_10720083_DEL [dm6]	AT	A	9.368e^-5	0.744	INTERGENIC
3R	9015821	3R_9015821_SNP [dm3] 3R_13190099_SNP [dm6]	C	T	9.383e^-5	0.744	DOWNSTREAM CG14380 INTERGENIC
3R	6562380	3R_6562380_SNP [dm3] 3R_10736658_SNP [dm6]	T	C	9.397e^-5	0.744	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
2R	9231657	2R_9231657_SNP [dm3] 2R_13344152_SNP [dm6]	T	C	9.408e^-5	0.744	INTRON CR44206
3R	16899714	3R_16899714_SNP [dm3] 3R_21073992_SNP [dm6]	C	G	9.419e^-5	0.744	UPSTREAM dmrt93B & 1 other INTERGENIC
3L	10713111	3L_10713111_SNP [dm3] 3L_10720011_SNP [dm6]	A	G	9.487e^-5	0.744	INTERGENIC
3L	18419998	3L_18419998_SNP [dm3] 3L_18426898_SNP [dm6]	A	G	9.526e^-5	0.744	INTERGENIC
2R	8542295	2R_8542295_SNP [dm3] 2R_12654790_SNP [dm6]	C	T	9.599e^-5	0.744	SYNONYMOUS_CODING ZnT49B
2L	18535786	2L_18535786_SNP [dm3] 2L_18535786_SNP [dm6]	G	T	9.651e^-5	0.744	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3L	7108085	3L_7108085_SNP [dm3] 3L_7114985_SNP [dm6]	G	T	9.697e^-5	0.744	INTRON form3
3R	6722781	3R_6722781_SNP [dm3] 3R_10897059_SNP [dm6]	C	G	9.777e^-5	0.744	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
2L	18588481	2L_18588481_SNP [dm3] 2L_18588481_SNP [dm6]	G	A	9.885e^-5	0.744	INTRON Pde11
2L	19262314	2L_19262314_SNP [dm3] 2L_19262314_SNP [dm6]	G	A	9.901e^-5	0.744	UPSTREAM CR44191 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	8378399	3L_8378399_SNP [dm3] 3L_8385299_SNP [dm6]	A	C	1.003e^-4	0.744	INTRON ImpE1
3L	10712960	3L_10712960_SNP [dm3] 3L_10719860_SNP [dm6]	G	T	1.020e^-4	0.744	INTERGENIC
3L	7769557	3L_7769557_SNP [dm3] 3L_7776457_SNP [dm6]	G	T	1.024e^-4	0.744	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
X	21958778	X_21958778_SNP [dm3] X_22556942_SNP [dm6]	C	T	1.025e^-4	0.744	INTERGENIC	transposable element FlyBase
2R	14446040	2R_14446040_SNP [dm3] 2R_18558535_SNP [dm6]	G	A	1.027e^-4	0.744	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10712976	3L_10712976_SNP [dm3] 3L_10719876_SNP [dm6]	G	A	1.032e^-4	0.744	INTERGENIC
3L	10712988	3L_10712988_SNP [dm3] 3L_10719888_SNP [dm6]	T	G	1.032e^-4	0.744	INTERGENIC
2L	19166055	2L_19166055_SNP [dm3] 2L_19166055_SNP [dm6]	T	A	1.034e^-4	0.744	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_ttk
3L	23261399	3L_23261399_DEL [dm3] 3L_23268299_DEL [dm6]	AATTGTTGATCTGAATAGTC...	A	1.038e^-4	0.744	INTRON nAChRalpha4
2L	18277713	2L_18277713_INS [dm3] 2L_18277713_INS [dm6]	C	CC	1.042e^-4	0.744	DOWNSTREAM CR44902 INTERGENIC
2L	18075077	2L_18075077_SNP [dm3] 2L_18075077_SNP [dm6]	C	A	1.051e^-4	0.744	INTERGENIC
3R	8810911	3R_8810911_SNP [dm3] 3R_12985189_SNP [dm6]	T	G	1.061e^-4	0.744	UTR_3_PRIME Paip2 UPSTREAM CG31342 DOWNSTREAM Paip2
3L	6337541	3L_6337541_SNP [dm3] 3L_6344441_SNP [dm6]	A	T	1.066e^-4	0.744	INTRON CG13300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21324876	3R_21324876_SNP [dm3] 3R_25499154_SNP [dm6]	C	T	1.090e^-4	0.744	INTERGENIC
3L	8236018	3L_8236018_SNP [dm3] 3L_8242918_SNP [dm6]	A	C	1.093e^-4	0.744	INTRON Dscam4
3L	4811505	3L_4811505_SNP [dm3] 3L_4811505_SNP [dm6]	A	C	1.097e^-4	0.744	INTRON Dhc64C
3L	10712971	3L_10712971_SNP [dm3] 3L_10719871_SNP [dm6]	A	T	1.098e^-4	0.744	INTERGENIC
X	10724323	X_10724323_SNP [dm3] X_10830290_SNP [dm6]	G	A	1.111e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.116e^-4	0.744	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2R	12333205	2R_12333205_SNP [dm3] 2R_16445700_SNP [dm6]	T	A	1.123e^-4	0.744	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
2L	18075076	2L_18075076_SNP [dm3] 2L_18075076_SNP [dm6]	C	T	1.128e^-4	0.744	INTERGENIC
2R	8542665	2R_8542665_SNP [dm3] 2R_12655160_SNP [dm6]	C	T	1.135e^-4	0.744	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8646
3R	16905265	3R_16905265_SNP [dm3] 3R_21079543_SNP [dm6]	A	T	1.141e^-4	0.744	INTRON HHEX
3R	9001495	3R_9001495_SNP [dm3] 3R_13175773_SNP [dm6]	A	T	1.142e^-4	0.744	INTERGENIC
3L	12096964	3L_12096964_SNP [dm3] 3L_12103864_SNP [dm6]	A	G	1.147e^-4	0.744	INTERGENIC
2L	18075109	2L_18075109_DEL [dm3] 2L_18075109_DEL [dm6]	AGGC	A	1.147e^-4	0.744	INTERGENIC
2L	18075124	2L_18075124_SNP [dm3] 2L_18075124_SNP [dm6]	A	T	1.147e^-4	0.744	INTERGENIC
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	1.147e^-4	0.744	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
2L	18625819	2L_18625819_INS [dm3] 2L_18625819_INS [dm6]	C	CGGTGGAGCCAAGCC...	1.149e^-4	0.744	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17817270	2R_17817270_SNP [dm3] 2R_21929765_SNP [dm6]	A	G	1.150e^-4	0.744	SYNONYMOUS_CODING Fili
2R	9204730	2R_9204730_SNP [dm3] 2R_13317225_SNP [dm6]	T	A	1.151e^-4	0.744	INTERGENIC
3R	23221970	3R_23221970_SNP [dm3] 3R_27396248_SNP [dm6]	C	G	1.158e^-4	0.744	INTRON side
3R	24967313	3R_24967313_SNP [dm3] 3R_29141591_SNP [dm6]	T	G	1.158e^-4	0.744	INTRON CG14516
3L	7177506	3L_7177506_SNP [dm3] 3L_7184406_SNP [dm6]	G	A	1.160e^-4	0.744	INTRON Dscam2
3L	15835659	3L_15835659_SNP [dm3] 3L_15842559_SNP [dm6]	A	G	1.165e^-4	0.744	DOWNSTREAM mir-263b INTRON CG32150
3L	4811537	3L_4811537_SNP [dm3] 3L_4811537_SNP [dm6]	C	T	1.167e^-4	0.744	INTRON Dhc64C
3L	6599663	3L_6599663_SNP [dm3] 3L_6606563_SNP [dm6]	C	T	1.173e^-4	0.744	SYNONYMOUS_CODING CG8368 UPSTREAM zpg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8117971	2L_8117971_SNP [dm3] 2L_8117971_SNP [dm6]	C	T	1.178e^-4	0.744	SYNONYMOUS_CODING mon2
2L	13816557	2L_13816557_SNP [dm3] 2L_13816557_SNP [dm6]	A	G	1.182e^-4	0.744	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13816626	2L_13816626_SNP [dm3] 2L_13816626_SNP [dm6]	G	C	1.182e^-4	0.744	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17686624	2L_17686624_SNP [dm3] 2L_17686624_SNP [dm6]	G	T	1.192e^-4	0.744	INTRON CadN
3R	9721590	3R_9721590_SNP [dm3] 3R_13895868_SNP [dm6]	G	A	1.202e^-4	0.744	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17089115	2R_17089115_SNP [dm3] 2R_21201610_SNP [dm6]	G	A	1.205e^-4	0.744	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17089116	2R_17089116_SNP [dm3] 2R_21201611_SNP [dm6]	T	A	1.205e^-4	0.744	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1068389	2L_1068389_SNP [dm3] 2L_1068389_SNP [dm6]	G	A	1.206e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17508827	3R_17508827_SNP [dm3] 3R_21683105_SNP [dm6]	T	A	1.207e^-4	0.744	INTRON CG31176
3L	394101	3L_394101_SNP [dm3] 3L_394101_SNP [dm6]	A	G	1.208e^-4	0.744	UPSTREAM CR45378 EXON CR43969
X	21326645	X_21326645_SNP [dm3] X_21455618_SNP [dm6]	G	A	1.209e^-4	0.744	INTRON CG42343
3L	2283520	3L_2283520_SNP [dm3] 3L_2283520_SNP [dm6]	T	A	1.220e^-4	0.744	INTRON MsR2
2R	3744188	2R_3744188_SNP [dm3] 2R_7856683_SNP [dm6]	A	T	1.232e^-4	0.744	INTRON Dgk
3R	9154859	3R_9154859_SNP [dm3] 3R_13329137_SNP [dm6]	T	C	1.236e^-4	0.744	UTR_3_PRIME PK2-R2
2R	16149038	2R_16149038_SNP [dm3] 2R_20261533_SNP [dm6]	G	A	1.238e^-4	0.744	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15835892	3L_15835892_SNP [dm3] 3L_15842792_SNP [dm6]	T	A	1.239e^-4	0.744	DOWNSTREAM mir-263b INTRON CG32150
3R	16897729	3R_16897729_SNP [dm3] 3R_21072007_SNP [dm6]	T	A	1.240e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6574068	3R_6574068_SNP [dm3] 3R_10748346_SNP [dm6]	A	T	1.243e^-4	0.744	INTRON TkR86C
3R	8406521	3R_8406521_SNP [dm3] 3R_12580799_SNP [dm6]	A	G	1.244e^-4	0.744	INTRON Octbeta2R
2L	18075070	2L_18075070_SNP [dm3] 2L_18075070_SNP [dm6]	A	C	1.251e^-4	0.744	INTERGENIC
3R	8933880	3R_8933880_SNP [dm3] 3R_13108158_SNP [dm6]	C	T	1.255e^-4	0.744	INTRON timeout	TF binding site mE1_TFBS_inv
2R	3257836	2R_3257836_SNP [dm3] 2R_7370331_SNP [dm6]	T	G	1.257e^-4	0.744	INTRON Dscam1	regulatory region REDfly_CRMs
2L	15170869	2L_15170869_SNP [dm3] 2L_15170869_SNP [dm6]	G	C	1.264e^-4	0.744	INTRON CG4168
X	20903288	X_20903288_SNP [dm3] X_21032261_SNP [dm6]	C	T	1.267e^-4	0.744	UPSTREAM CG1529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5152436	X_5152436_SNP [dm3] X_5258403_SNP [dm6]	G	C	1.273e^-4	0.744	INTERGENIC
3L	7276864	3L_7276864_SNP [dm3] 3L_7283764_SNP [dm6]	G	A	1.273e^-4	0.744	INTRON unc-13-4A
3L	10712990	3L_10712990_SNP [dm3] 3L_10719890_SNP [dm6]	T	A	1.275e^-4	0.744	INTERGENIC
3L	4257732	3L_4257732_SNP [dm3] 3L_4257732_SNP [dm6]	T	G	1.284e^-4	0.744	INTRON CG15011
3R	6982814	3R_6982814_SNP [dm3] 3R_11157092_SNP [dm6]	G	A	1.285e^-4	0.744	UPSTREAM Ugt86Da DOWNSTREAM Ugt86Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6045631	2L_6045631_SNP [dm3] 2L_6045631_SNP [dm6]	T	G	1.287e^-4	0.744	UPSTREAM ade2 DOWNSTREAM mir-966 & 1 other INTRON ade2 EXON mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17898590	2L_17898590_SNP [dm3] 2L_17898590_SNP [dm6]	C	T	1.287e^-4	0.744	INTERGENIC
3R	16897347	3R_16897347_SNP [dm3] 3R_21071625_SNP [dm6]	T	A	1.291e^-4	0.744	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8380853	3L_8380853_SNP [dm3] 3L_8387753_SNP [dm6]	A	G	1.295e^-4	0.744	NON_SYNONYMOUS_CODING ImpE1
3R	2127505	3R_2127505_SNP [dm3] 3R_6301783_SNP [dm6]	C	T	1.295e^-4	0.744	UPSTREAM Osi15 INTERGENIC
3R	17467244	3R_17467244_SNP [dm3] 3R_21641522_SNP [dm6]	A	T	1.300e^-4	0.744	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	13206628	X_13206628_INS [dm3] X_13312595_INS [dm6]	C	CC	1.302e^-4	0.744	INTRON IP3K2
2L	17867172	2L_17867172_SNP [dm3] 2L_17867172_SNP [dm6]	C	A	1.306e^-4	0.744	INTRON CadN2
2L	14173129	2L_14173129_SNP [dm3] 2L_14173129_SNP [dm6]	C	T	1.308e^-4	0.744	INTRON CG43333
2L	7099632	2L_7099632_SNP [dm3] 2L_7099632_SNP [dm6]	C	T	1.309e^-4	0.744	UTR_3_PRIME Pvf3 DOWNSTREAM Pvf3
3L	1522416	3L_1522416_SNP [dm3] 3L_1522416_SNP [dm6]	A	G	1.313e^-4	0.744	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10949061	3L_10949061_SNP [dm3] 3L_10955961_SNP [dm6]	A	T	1.316e^-4	0.744	INTERGENIC
2R	16149025	2R_16149025_SNP [dm3] 2R_20261520_SNP [dm6]	A	C	1.320e^-4	0.744	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9224144	3R_9224144_SNP [dm3] 3R_13398422_SNP [dm6]	C	T	1.323e^-4	0.744	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3L	2099493	3L_2099493_SNP [dm3] 3L_2099493_SNP [dm6]	A	G	1.328e^-4	0.744	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16897735	3R_16897735_SNP [dm3] 3R_21072013_SNP [dm6]	T	A	1.330e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15455335	3L_15455335_SNP [dm3] 3L_15462235_SNP [dm6]	A	C	1.331e^-4	0.744	INTERGENIC
3R	16897727	3R_16897727_INS [dm3] 3R_21072005_INS [dm6]	G	GAAGTTCAT	1.338e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16897737	3R_16897737_INS [dm3] 3R_21072015_INS [dm6]	A	AAATTGAGAA	1.338e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6574073	3R_6574073_SNP [dm3] 3R_10748351_SNP [dm6]	C	G	1.348e^-4	0.744	INTRON TkR86C
3R	21704235	3R_21704235_SNP [dm3] 3R_25878513_SNP [dm6]	A	G	1.349e^-4	0.744	INTRON Tsp96F
2L	762577	2L_762577_SNP [dm3] 2L_762577_SNP [dm6]	T	A	1.350e^-4	0.744	DOWNSTREAM GABA-B-R3 INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.356e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21324877	3R_21324877_SNP [dm3] 3R_25499155_SNP [dm6]	A	C	1.357e^-4	0.744	INTERGENIC
3R	9217803	3R_9217803_DEL [dm3] 3R_13392081_DEL [dm6]	TCGAAT	T	1.368e^-4	0.744	INTRON CCHa2	TF binding site mE1_TFBS_inv
3L	6667524	3L_6667524_SNP [dm3] 3L_6674424_SNP [dm6]	T	C	1.370e^-4	0.744	INTERGENIC
2R	14901833	2R_14901833_SNP [dm3] 2R_19014328_SNP [dm6]	T	C	1.377e^-4	0.744	INTERGENIC
3L	4811540	3L_4811540_SNP [dm3] 3L_4811540_SNP [dm6]	T	A	1.380e^-4	0.744	INTRON Dhc64C
X	9997469	X_9997469_SNP [dm3] X_10103436_SNP [dm6]	C	A	1.381e^-4	0.744	INTRON RhoU
3L	2173026	3L_2173026_SNP [dm3] 3L_2173026_SNP [dm6]	T	C	1.386e^-4	0.744	UTR_3_PRIME CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
2L	18287067	2L_18287067_SNP [dm3] 2L_18287067_SNP [dm6]	C	T	1.387e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	6562391	3R_6562391_SNP [dm3] 3R_10736669_SNP [dm6]	C	T	1.389e^-4	0.744	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
3L	4242110	3L_4242110_SNP [dm3] 3L_4242110_SNP [dm6]	T	C	1.395e^-4	0.744	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20062918	2R_20062918_SNP [dm3] 2R_24175395_SNP [dm6]	G	A	1.400e^-4	0.744	SPLICE_SITE_REGION Nop60B SYNONYMOUS_CODING Nop60B UPSTREAM mRpS17 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	18075130	2L_18075130_DEL [dm3] 2L_18075130_DEL [dm6]	TGTCCATCGAATATCC...	A	1.404e^-4	0.744	INTERGENIC
2L	18277196	2L_18277196_SNP [dm3] 2L_18277196_SNP [dm6]	A	C	1.406e^-4	0.744	INTERGENIC
2R	17604707	2R_17604707_SNP [dm3] 2R_21717202_SNP [dm6]	G	A	1.408e^-4	0.744	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	13816350	2L_13816350_SNP [dm3] 2L_13816350_SNP [dm6]	C	T	1.417e^-4	0.744	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad
2L	18508942	2L_18508942_DEL [dm3] 2L_18508942_DEL [dm6]	TAGGGGG	T	1.417e^-4	0.744	UPSTREAM CG10178 INTERGENIC
3R	23998876	3R_23998876_SNP [dm3] 3R_28173154_SNP [dm6]	A	G	1.425e^-4	0.744	INTRON CG34354
3R	16897733	3R_16897733_SNP [dm3] 3R_21072011_SNP [dm6]	G	T	1.427e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21877224	3R_21877224_SNP [dm3] 3R_26051502_SNP [dm6]	G	C	1.431e^-4	0.744	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
2L	8586954	2L_8586954_INS [dm3] 2L_8586954_INS [dm6]	C	CC	1.435e^-4	0.744	INTRON Sema-1a
3R	18657674	3R_18657674_SNP [dm3] 3R_22831952_SNP [dm6]	G	A	1.441e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16326874	2L_16326874_SNP [dm3] 2L_16326874_SNP [dm6]	C	G	1.443e^-4	0.744	UPSTREAM CG4278 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11216250	3L_11216250_SNP [dm3] 3L_11223150_SNP [dm6]	C	A	1.444e^-4	0.744	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9002546	3L_9002546_SNP [dm3] 3L_9009446_SNP [dm6]	C	A	1.447e^-4	0.744	SYNONYMOUS_CODING CG5194	TF binding site mE1_TFBS_cad
2L	5141997	2L_5141997_SNP [dm3] 2L_5141997_SNP [dm6]	C	A	1.449e^-4	0.744	SPLICE_SITE_REGION Msp300 INTRON Msp300
X	9755715	X_9755715_SNP [dm3] X_9861682_SNP [dm6]	T	C	1.453e^-4	0.744	INTERGENIC
2L	17864302	2L_17864302_DEL [dm3] 2L_17864302_DEL [dm6]	GCGCCTTCCC	G	1.456e^-4	0.744	UTR_5_PRIME CadN2
3L	14150144	3L_14150144_SNP [dm3] 3L_14157044_SNP [dm6]	G	A	1.459e^-4	0.744	INTERGENIC	regulatory region REDfly_CRMs
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	1.466e^-4	0.744	UTR_3_PRIME S DOWNSTREAM S
2R	6125079	2R_6125079_INS [dm3] 2R_10237574_INS [dm6]	C	CACAC	1.472e^-4	0.744	UPSTREAM Hdc & 1 other DOWNSTREAM CR45265 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	23479555	3L_23479555_SNP [dm3] 3L_23486455_SNP [dm6]	C	A	1.478e^-4	0.744	INTERGENIC	transposable element FlyBase
3R	17000224	3R_17000224_SNP [dm3] 3R_21174502_SNP [dm6]	T	C	1.480e^-4	0.744	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17713615	2L_17713615_SNP [dm3] 2L_17713615_SNP [dm6]	C	G	1.482e^-4	0.744	INTRON CadN
3R	8870637	3R_8870637_INS [dm3] 3R_13044915_INS [dm6]	T	TA	1.493e^-4	0.744	UTR_5_PRIME Hsc70-2 DOWNSTREAM CG11670 & 1 other
2L	17918030	2L_17918030_SNP [dm3] 2L_17918030_SNP [dm6]	A	G	1.495e^-4	0.744	DOWNSTREAM CR43274 INTERGENIC
3R	13962394	3R_13962394_SNP [dm3] 3R_18136672_SNP [dm6]	A	C	1.505e^-4	0.744	INTERGENIC
3R	24184039	3R_24184039_SNP [dm3] 3R_28358317_SNP [dm6]	A	T	1.508e^-4	0.744	INTERGENIC
2L	18580605	2L_18580605_SNP [dm3] 2L_18580605_SNP [dm6]	C	A	1.511e^-4	0.744	INTRON Pde11
X	6966609	X_6966609_INS [dm3] X_7072576_INS [dm6]	A	ATACA	1.512e^-4	0.744	UTR_3_PRIME CG4607
2L	17713613	2L_17713613_INS [dm3] 2L_17713613_INS [dm6]	T	TTT	1.512e^-4	0.744	INTRON CadN
3R	6975124	3R_6975124_SNP [dm3] 3R_11149402_SNP [dm6]	A	G	1.512e^-4	0.744	INTERGENIC
2R	12660306	2R_12660306_SNP [dm3] 2R_16772801_SNP [dm6]	G	A	1.523e^-4	0.744	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3001009	3L_3001009_SNP [dm3] 3L_3001009_SNP [dm6]	C	T	1.527e^-4	0.744	UPSTREAM FMRFaR INTERGENIC
3L	7282401	3L_7282401_DEL [dm3] 3L_7289301_DEL [dm6]	CG	C	1.529e^-4	0.744	INTRON unc-13-4A
3R	16062907	3R_16062907_SNP [dm3] 3R_20237185_SNP [dm6]	C	A	1.529e^-4	0.744	INTRON Nlg4
3L	14831130	3L_14831130_SNP [dm3] 3L_14838030_SNP [dm6]	G	A	1.537e^-4	0.744	INTRON CG17839
2L	18277199	2L_18277199_SNP [dm3] 2L_18277199_SNP [dm6]	G	T	1.538e^-4	0.744	INTERGENIC
3R	21324921	3R_21324921_SNP [dm3] 3R_25499199_SNP [dm6]	T	A	1.541e^-4	0.744	INTERGENIC
3R	16964541	3R_16964541_SNP [dm3] 3R_21138819_SNP [dm6]	A	C	1.548e^-4	0.744	UTR_5_PRIME meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18533395	2L_18533395_SNP [dm3] 2L_18533395_SNP [dm6]	C	T	1.550e^-4	0.744	SYNONYMOUS_CODING Pde11 UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	1.555e^-4	0.744	INTERGENIC
2L	5853534	2L_5853534_SNP [dm3] 2L_5853534_SNP [dm6]	C	T	1.558e^-4	0.744	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna
2L	10459121	2L_10459121_SNP [dm3] 2L_10459121_SNP [dm6]	T	A	1.564e^-4	0.744	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8618937	3L_8618937_SNP [dm3] 3L_8625837_SNP [dm6]	A	G	1.567e^-4	0.744	UPSTREAM Zasp66 INTRON Zasp66
2L	7133954	2L_7133954_SNP [dm3] 2L_7133954_SNP [dm6]	G	C	1.568e^-4	0.744	START_GAINED Pvf3 UTR_5_PRIME Pvf3 UPSTREAM Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20739563	2L_20739563_SNP [dm3] 2L_20739563_SNP [dm6]	A	T	1.572e^-4	0.744	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
2L	18748193	2L_18748193_SNP [dm3] 2L_18748193_SNP [dm6]	G	T	1.578e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad
X	20903287	X_20903287_SNP [dm3] X_21032260_SNP [dm6]	A	T	1.578e^-4	0.744	UPSTREAM CG1529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18526121	2L_18526121_SNP [dm3] 2L_18526121_SNP [dm6]	C	T	1.581e^-4	0.744	INTRON CG10211
3R	7310157	3R_7310157_SNP [dm3] 3R_11484435_SNP [dm6]	G	C	1.600e^-4	0.744	INTERGENIC
3L	8380830	3L_8380830_SNP [dm3] 3L_8387730_SNP [dm6]	A	G	1.601e^-4	0.744	NON_SYNONYMOUS_CODING ImpE1
X	11628800	X_11628800_SNP [dm3] X_11734767_SNP [dm6]	T	G	1.604e^-4	0.744	UPSTREAM inaF-A INTRON CG15221	TF binding site mE1_TFBS_chinmo
2L	17884705	2L_17884705_SNP [dm3] 2L_17884705_SNP [dm6]	G	A	1.606e^-4	0.744	INTERGENIC
2L	18283766	2L_18283766_SNP [dm3] 2L_18283766_SNP [dm6]	C	G	1.610e^-4	0.744	INTERGENIC
3R	23722702	3R_23722702_SNP [dm3] 3R_27896980_SNP [dm6]	G	A	1.611e^-4	0.744	INTRON CG34353
2L	18938096	2L_18938096_SNP [dm3] 2L_18938096_SNP [dm6]	A	C	1.611e^-4	0.744	INTRON ssp3
3L	8719994	3L_8719994_SNP [dm3] 3L_8726894_SNP [dm6]	A	C	1.612e^-4	0.744	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11044903	3R_11044903_MNP [dm3] 3R_15219181_MNP [dm6]	GGGG	ACTT	1.614e^-4	0.744	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16967141	3R_16967141_SNP [dm3] 3R_21141419_SNP [dm6]	C	T	1.615e^-4	0.744	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16473653	2L_16473653_SNP [dm3] 2L_16473653_SNP [dm6]	T	A	1.625e^-4	0.744	INTRON dac
2L	12057349	2L_12057349_SNP [dm3] 2L_12057349_SNP [dm6]	C	T	1.627e^-4	0.744	UTR_5_PRIME CG34164 UTR_3_PRIME RpL7-like UPSTREAM CG34164 DOWNSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2L	12057350	2L_12057350_SNP [dm3] 2L_12057350_SNP [dm6]	T	A	1.627e^-4	0.744	UTR_5_PRIME CG34164 UTR_3_PRIME RpL7-like UPSTREAM CG34164 DOWNSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2R	3256992	2R_3256992_SNP [dm3] 2R_7369487_SNP [dm6]	T	C	1.628e^-4	0.744	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16897664	3R_16897664_SNP [dm3] 3R_21071942_SNP [dm6]	C	T	1.632e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7696347	3L_7696347_SNP [dm3] 3L_7703247_SNP [dm6]	G	A	1.634e^-4	0.744	INTRON CG32373 & 1 other
3L	15836497	3L_15836497_SNP [dm3] 3L_15843397_SNP [dm6]	C	A	1.637e^-4	0.744	DOWNSTREAM mir-263b INTRON CG32150	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9273471	2L_9273471_SNP [dm3] 2L_9273471_SNP [dm6]	A	C	1.638e^-4	0.744	INTRON Ggamma30A
3R	16897764	3R_16897764_SNP [dm3] 3R_21072042_SNP [dm6]	A	T	1.641e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14113738	2R_14113738_SNP [dm3] 2R_18226233_SNP [dm6]	T	C	1.645e^-4	0.744	UPSTREAM CR45310 INTERGENIC
2L	17858252	2L_17858252_SNP [dm3] 2L_17858252_SNP [dm6]	C	T	1.647e^-4	0.744	INTRON CadN2
2L	17858361	2L_17858361_SNP [dm3] 2L_17858361_SNP [dm6]	C	G	1.647e^-4	0.744	INTRON CadN2
3R	16770770	3R_16770770_SNP [dm3] 3R_20945048_SNP [dm6]	C	A	1.647e^-4	0.744	INTRON CG31191
3L	23400521	3L_23400521_SNP [dm3] 3L_23407421_SNP [dm6]	T	C	1.650e^-4	0.744	INTERGENIC	transposable element FlyBase
3R	8942983	3R_8942983_DEL [dm3] 3R_13117261_DEL [dm6]	CC	A	1.652e^-4	0.744	INTRON timeout
3R	16960102	3R_16960102_SNP [dm3] 3R_21134380_SNP [dm6]	C	A	1.653e^-4	0.744	UTR_5_PRIME Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl
3R	21324882	3R_21324882_SNP [dm3] 3R_25499160_SNP [dm6]	G	A	1.660e^-4	0.744	INTERGENIC
2L	6331010	2L_6331010_SNP [dm3] 2L_6331010_SNP [dm6]	C	A	1.670e^-4	0.744	INTRON PDZ-GEF
3R	6722783	3R_6722783_SNP [dm3] 3R_10897061_SNP [dm6]	C	G	1.676e^-4	0.744	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3R	16899213	3R_16899213_SNP [dm3] 3R_21073491_SNP [dm6]	A	G	1.685e^-4	0.744	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	14574895	X_14574895_SNP [dm3] X_14680862_SNP [dm6]	C	A	1.689e^-4	0.744	SYNONYMOUS_CODING CG5321
3L	18420164	3L_18420164_SNP [dm3] 3L_18427064_SNP [dm6]	A	C	1.695e^-4	0.744	INTERGENIC
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	1.697e^-4	0.744	INTRON ds	TF binding site mE1_TFBS_Trl
X	15491312	X_15491312_SNP [dm3] X_15597279_SNP [dm6]	A	T	1.698e^-4	0.744	INTERGENIC
3L	1848631	3L_1848631_SNP [dm3] 3L_1848631_SNP [dm6]	A	T	1.706e^-4	0.744	INTERGENIC
3L	2098860	3L_2098860_SNP [dm3] 3L_2098860_SNP [dm6]	A	G	1.706e^-4	0.744	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7722337	2R_7722337_SNP [dm3] 2R_11834832_SNP [dm6]	G	A	1.706e^-4	0.744	INTRON Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19061110	3R_19061110_SNP [dm3] 3R_23235388_SNP [dm6]	T	A	1.707e^-4	0.744	INTRON CG4467
2L	17878092	2L_17878092_SNP [dm3] 2L_17878092_SNP [dm6]	C	T	1.712e^-4	0.744	INTERGENIC
3R	16898278	3R_16898278_SNP [dm3] 3R_21072556_SNP [dm6]	G	A	1.713e^-4	0.744	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17050815	2R_17050815_SNP [dm3] 2R_21163310_SNP [dm6]	C	A	1.720e^-4	0.744	INTRON CG4266	TF binding site mE1_TFBS_cad
3L	6742748	3L_6742748_SNP [dm3] 3L_6749648_SNP [dm6]	C	T	1.733e^-4	0.744	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1794795	2L_1794795_SNP [dm3] 2L_1794795_SNP [dm6]	C	T	1.734e^-4	0.744	SYNONYMOUS_CODING Gr22a	TF binding site mE1_TFBS_sens
2R	3271888	2R_3271888_SNP [dm3] 2R_7384383_SNP [dm6]	G	A	1.736e^-4	0.744	NON_SYNONYMOUS_CODING cos	TF binding site mE1_TFBS_chinmo
X	11628792	X_11628792_SNP [dm3] X_11734759_SNP [dm6]	G	T	1.737e^-4	0.744	UPSTREAM inaF-A INTRON CG15221	TF binding site mE1_TFBS_chinmo
3R	16897806	3R_16897806_SNP [dm3] 3R_21072084_SNP [dm6]	G	A	1.738e^-4	0.744	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17927991	2L_17927991_SNP [dm3] 2L_17927991_SNP [dm6]	G	A	1.751e^-4	0.744	INTERGENIC
3R	24182899	3R_24182899_SNP [dm3] 3R_28357177_SNP [dm6]	G	A	1.751e^-4	0.744	INTERGENIC
3L	10945654	3L_10945654_SNP [dm3] 3L_10952554_SNP [dm6]	G	T	1.756e^-4	0.744	INTERGENIC
3L	10712975	3L_10712975_SNP [dm3] 3L_10719875_SNP [dm6]	A	C	1.757e^-4	0.744	INTERGENIC
3L	17401310	3L_17401310_SNP [dm3] 3L_17408210_SNP [dm6]	C	A	1.761e^-4	0.744	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	23531796	3R_23531796_SNP [dm3] 3R_27706074_SNP [dm6]	A	G	1.770e^-4	0.744	UTR_5_PRIME CG12428 INTRON CG12428
3R	23610794	3R_23610794_SNP [dm3] 3R_27785072_SNP [dm6]	T	C	1.770e^-4	0.744	INTRON CG34353
2R	18362885	2R_18362885_SNP [dm3] 2R_22475380_SNP [dm6]	C	G	1.774e^-4	0.744	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3L	23400529	3L_23400529_DEL [dm3] 3L_23407429_DEL [dm6]	AGCAG	A	1.777e^-4	0.744	INTERGENIC	transposable element FlyBase
3L	23400522	3L_23400522_SNP [dm3] 3L_23407422_SNP [dm6]	T	A	1.779e^-4	0.744	INTERGENIC	transposable element FlyBase
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	1.779e^-4	0.744	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	17926668	2L_17926668_SNP [dm3] 2L_17926668_SNP [dm6]	T	C	1.781e^-4	0.744	INTERGENIC
2L	17930574	2L_17930574_DEL [dm3] 2L_17930574_DEL [dm6]	CG	C	1.781e^-4	0.744	INTERGENIC
2L	17936504	2L_17936504_INS [dm3] 2L_17936504_INS [dm6]	G	TAA	1.781e^-4	0.744	INTERGENIC
3R	24127672	3R_24127672_SNP [dm3] 3R_28301950_SNP [dm6]	T	A	1.785e^-4	0.744	INTERGENIC
3R	23998849	3R_23998849_SNP [dm3] 3R_28173127_SNP [dm6]	G	A	1.789e^-4	0.744	INTRON CG34354
3R	23542455	3R_23542455_SNP [dm3] 3R_27716733_SNP [dm6]	G	A	1.790e^-4	0.744	INTERGENIC
3R	23668339	3R_23668339_SNP [dm3] 3R_27842617_SNP [dm6]	A	G	1.790e^-4	0.744	INTRON CG34353
2L	1165333	2L_1165333_SNP [dm3] 2L_1165333_SNP [dm6]	T	C	1.791e^-4	0.744	NON_SYNONYMOUS_CODING IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17862158	2L_17862158_SNP [dm3] 2L_17862158_SNP [dm6]	C	T	1.791e^-4	0.744	INTRON CadN2
2L	17850870	2L_17850870_SNP [dm3] 2L_17850870_SNP [dm6]	A	T	1.792e^-4	0.744	INTRON CadN2
3R	13437996	3R_13437996_SNP [dm3] 3R_17612274_SNP [dm6]	C	G	1.801e^-4	0.744	UPSTREAM Edg91 & 1 other INTERGENIC
3R	13467428	3R_13467428_SNP [dm3] 3R_17641706_SNP [dm6]	A	C	1.804e^-4	0.744	INTRON CG43175
3R	8949206	3R_8949206_SNP [dm3] 3R_13123484_SNP [dm6]	C	A	1.822e^-4	0.744	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3R	17001969	3R_17001969_SNP [dm3] 3R_21176247_SNP [dm6]	C	T	1.823e^-4	0.744	INTRON SNF4Agamma
2R	8919177	2R_8919177_SNP [dm3] 2R_13031672_SNP [dm6]	T	C	1.826e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_sens
3R	6983761	3R_6983761_SNP [dm3] 3R_11158039_SNP [dm6]	A	T	1.831e^-4	0.744	INTRON Ugt86Da
2L	17886984	2L_17886984_DEL [dm3] 2L_17886984_DEL [dm6]	AAAT	G	1.838e^-4	0.744	INTERGENIC
2L	1042213	2L_1042213_SNP [dm3] 2L_1042213_SNP [dm6]	A	G	1.839e^-4	0.744	INTRON IA-2
3R	23914074	3R_23914074_SNP [dm3] 3R_28088352_SNP [dm6]	G	A	1.841e^-4	0.744	UTR_3_PRIME CG34362
3R	23634859	3R_23634859_SNP [dm3] 3R_27809137_SNP [dm6]	G	T	1.842e^-4	0.744	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	4837071	3R_4837071_SNP [dm3] 3R_9011349_SNP [dm6]	G	A	1.851e^-4	0.744	INTRON CG11984	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5521755	X_5521755_SNP [dm3] X_5627722_SNP [dm6]	G	T	1.854e^-4	0.744	UTR_3_PRIME CG42492 DOWNSTREAM CG42492
3L	9225020	3L_9225020_DEL [dm3] 3L_9231920_DEL [dm6]	GGACGAAG	G	1.860e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_inv
X	14212517	X_14212517_SNP [dm3] X_14318484_SNP [dm6]	A	G	1.863e^-4	0.744	INTERGENIC
X	4924791	X_4924791_SNP [dm3] X_5030758_SNP [dm6]	T	C	1.865e^-4	0.744	INTRON CR44833
2L	17445021	2L_17445021_SNP [dm3] 2L_17445021_SNP [dm6]	C	T	1.867e^-4	0.744	INTRON dl
X	557516	X_557516_SNP [dm3] X_663483_SNP [dm6]	A	T	1.871e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12986899	3L_12986899_DEL [dm3] 3L_12993799_DEL [dm6]	AGTGCAATGAA...	A	1.873e^-4	0.744	INTERGENIC
2L	16326832	2L_16326832_SNP [dm3] 2L_16326832_SNP [dm6]	T	A	1.881e^-4	0.744	UPSTREAM CG4278 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1079296	2L_1079296_SNP [dm3] 2L_1079296_SNP [dm6]	A	T	1.884e^-4	0.744	NON_SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
3R	6722218	3R_6722218_SNP [dm3] 3R_10896496_SNP [dm6]	A	G	1.890e^-4	0.744	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
2R	14694038	2R_14694038_SNP [dm3] 2R_18806533_SNP [dm6]	C	G	1.892e^-4	0.744	INTRON CR44468 EXON CR44468	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	683533	2L_683533_SNP [dm3] 2L_683533_SNP [dm6]	G	A	1.893e^-4	0.744	INTRON ds
3R	23660305	3R_23660305_SNP [dm3] 3R_27834583_SNP [dm6]	T	G	1.895e^-4	0.744	INTRON CG34353
2L	1068606	2L_1068606_SNP [dm3] 2L_1068606_SNP [dm6]	C	T	1.899e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068607	2L_1068607_SNP [dm3] 2L_1068607_SNP [dm6]	C	T	1.899e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068609	2L_1068609_SNP [dm3] 2L_1068609_SNP [dm6]	A	G	1.899e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17508797	3R_17508797_SNP [dm3] 3R_21683075_SNP [dm6]	A	C	1.905e^-4	0.744	INTRON CG31176
3R	16770516	3R_16770516_SNP [dm3] 3R_20944794_SNP [dm6]	A	G	1.914e^-4	0.744	INTRON CG31191
3R	9166485	3R_9166485_SNP [dm3] 3R_13340763_SNP [dm6]	C	T	1.917e^-4	0.744	SYNONYMOUS_CODING PK2-R1
2L	15854825	2L_15854825_SNP [dm3] 2L_15854825_SNP [dm6]	C	T	1.919e^-4	0.744	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2R	20080943	2R_20080943_SNP [dm3] 2R_24193420_SNP [dm6]	T	C	1.928e^-4	0.744	SYNONYMOUS_CODING ocm
3R	16770843	3R_16770843_SNP [dm3] 3R_20945121_SNP [dm6]	T	C	1.937e^-4	0.744	INTRON CG31191	TF binding site mE1_TFBS_cad
2L	9273991	2L_9273991_SNP [dm3] 2L_9273991_SNP [dm6]	C	T	1.941e^-4	0.744	INTRON Ggamma30A
3R	24017220	3R_24017220_SNP [dm3] 3R_28191498_SNP [dm6]	A	G	1.945e^-4	0.744	INTRON CG34354
X	10120956	X_10120956_INS [dm3] X_10226923_INS [dm6]	A	ACTGTCCAC	1.947e^-4	0.744	UTR_5_PRIME CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
3L	10981035	3L_10981035_SNP [dm3] 3L_10987935_SNP [dm6]	G	A	1.949e^-4	0.744	INTRON klu
X	13206633	X_13206633_SNP [dm3] X_13312600_SNP [dm6]	G	C	1.950e^-4	0.744	INTRON IP3K2
3R	12860093	3R_12860093_DEL [dm3] 3R_17034371_DEL [dm6]	TGATCT	A	1.951e^-4	0.744	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2R	5973191	2R_5973191_SNP [dm3] 2R_10085686_SNP [dm6]	C	T	1.959e^-4	0.744	SYNONYMOUS_CODING sut4 INTRON CG2269
2R	8538203	2R_8538203_DEL [dm3] 2R_12650698_DEL [dm6]	GAT	G	1.959e^-4	0.744	DOWNSTREAM CG8778 INTERGENIC
2L	16035886	2L_16035886_SNP [dm3] 2L_16035886_SNP [dm6]	G	C	1.966e^-4	0.744	INTRON beat-Ic
3L	7690264	3L_7690264_SNP [dm3] 3L_7697164_SNP [dm6]	G	T	1.968e^-4	0.744	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	14450388	2L_14450388_SNP [dm3] 2L_14450388_SNP [dm6]	C	T	1.970e^-4	0.744	UTR_3_PRIME CG15283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2R	16765891	2R_16765891_SNP [dm3] 2R_20878386_SNP [dm6]	C	A	1.974e^-4	0.744	UTR_3_PRIME Ipk1 INTRON Ipk1
2L	17833026	2L_17833026_SNP [dm3] 2L_17833026_SNP [dm6]	C	T	1.976e^-4	0.744	INTRON CadN2
3R	13442530	3R_13442530_INS [dm3] 3R_17616808_INS [dm6]	G	GAGTGCATGCAAT...	1.987e^-4	0.744	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	18277195	2L_18277195_SNP [dm3] 2L_18277195_SNP [dm6]	C	T	1.994e^-4	0.744	INTERGENIC
3L	13574403	3L_13574403_SNP [dm3] 3L_13581303_SNP [dm6]	A	G	2.000e^-4	0.744	INTRON bru-3
3L	15142765	3L_15142765_SNP [dm3] 3L_15149665_SNP [dm6]	T	C	2.005e^-4	0.744	UPSTREAM FucTA INTRON FucTA
2R	19963410	2R_19963410_SNP [dm3] 2R_24075887_SNP [dm6]	T	A	2.009e^-4	0.744	UTR_3_PRIME Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A
2L	8606200	2L_8606200_SNP [dm3] 2L_8606200_SNP [dm6]	C	T	2.009e^-4	0.744	INTRON Sema-1a
2L	17886995	2L_17886995_DEL [dm3] 2L_17886995_DEL [dm6]	GTGAT	A	2.015e^-4	0.744	INTERGENIC
2L	17887003	2L_17887003_SNP [dm3] 2L_17887003_SNP [dm6]	G	T	2.015e^-4	0.744	INTERGENIC
X	1538072	X_1538072_SNP [dm3] X_1644039_SNP [dm6]	G	A	2.020e^-4	0.744	UTR_3_PRIME br INTRON Mur2B & 1 other
2L	1082496	2L_1082496_SNP [dm3] 2L_1082496_SNP [dm6]	G	T	2.022e^-4	0.744	SYNONYMOUS_CODING Atg4a DOWNSTREAM CG4629	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18533675	2L_18533675_SNP [dm3] 2L_18533675_SNP [dm6]	T	C	2.024e^-4	0.744	NON_SYNONYMOUS_CODING Pde11 UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10697136	3L_10697136_DEL [dm3] 3L_10704036_DEL [dm6]	TT	T	2.030e^-4	0.744	INTERGENIC
2L	1069048	2L_1069048_SNP [dm3] 2L_1069048_SNP [dm6]	C	A	2.032e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12085134	X_12085134_DEL [dm3] X_12191101_DEL [dm6]	AATGTGAATGTGA...	A	2.033e^-4	0.744	INTRON Ten-a
2L	18075034	2L_18075034_SNP [dm3] 2L_18075034_SNP [dm6]	C	T	2.033e^-4	0.744	INTERGENIC
3L	15661803	3L_15661803_SNP [dm3] 3L_15668703_SNP [dm6]	G	A	2.035e^-4	0.744	INTERGENIC
2L	10620490	2L_10620490_SNP [dm3] 2L_10620490_SNP [dm6]	C	G	2.043e^-4	0.744	SYNONYMOUS_CODING Trim9
2L	19217771	2L_19217771_SNP [dm3] 2L_19217771_SNP [dm6]	G	C	2.061e^-4	0.744	EXON CR44189	TF binding site BDTNP1_TFBS_twi
3L	23264821	3L_23264821_DEL [dm3] 3L_23271721_DEL [dm6]	TA	T	2.063e^-4	0.744	INTRON nAChRalpha4
3R	11331376	3R_11331376_SNP [dm3] 3R_15505654_SNP [dm6]	G	A	2.064e^-4	0.744	INTERGENIC
2R	17030991	2R_17030991_SNP [dm3] 2R_21143486_SNP [dm6]	A	T	2.068e^-4	0.744	UPSTREAM Xbp1 DOWNSTREAM CG9406 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18387203	2L_18387203_SNP [dm3] 2L_18387203_SNP [dm6]	G	A	2.072e^-4	0.744	DOWNSTREAM Fas3 INTRON Fas3
3R	24130129	3R_24130129_SNP [dm3] 3R_28304407_SNP [dm6]	G	A	2.073e^-4	0.744	NON_SYNONYMOUS_CODING CG12516
3L	14808245	3L_14808245_INS [dm3] 3L_14815145_INS [dm6]	A	AACCA	2.081e^-4	0.744	INTRON CG17839
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	2.091e^-4	0.744	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	2.091e^-4	0.744	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	2.091e^-4	0.744	INTERGENIC
2L	18075462	2L_18075462_SNP [dm3] 2L_18075462_SNP [dm6]	C	A	2.093e^-4	0.744	INTERGENIC
3L	14992192	3L_14992192_SNP [dm3] 3L_14999092_SNP [dm6]	C	T	2.109e^-4	0.744	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14970986	2R_14970986_SNP [dm3] 2R_19083481_SNP [dm6]	G	C	2.116e^-4	0.744	INTRON 5-HT1A
2R	4439243	2R_4439243_SNP [dm3] 2R_8551738_SNP [dm6]	G	T	2.118e^-4	0.744	DOWNSTREAM CG12780 INTERGENIC
3R	13871654	3R_13871654_SNP [dm3] 3R_18045932_SNP [dm6]	G	A	2.120e^-4	0.744	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2R	3281556	2R_3281556_DEL [dm3] 2R_7394051_DEL [dm6]	AACTAAAGGCCAAA...	A	2.142e^-4	0.744	UPSTREAM Gr43a & 1 other INTRON CG1707
3R	20781389	3R_20781389_SNP [dm3] 3R_24955667_SNP [dm6]	A	G	2.148e^-4	0.744	INTERGENIC
X	12411245	X_12411245_SNP [dm3] X_12517212_SNP [dm6]	C	T	2.151e^-4	0.744	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	4211904	3L_4211904_SNP [dm3] 3L_4211904_SNP [dm6]	C	T	2.158e^-4	0.744	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3R	23532937	3R_23532937_SNP [dm3] 3R_27707215_SNP [dm6]	G	T	2.159e^-4	0.744	SYNONYMOUS_CODING CG12877 UPSTREAM CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	19037735	3R_19037735_DEL [dm3] 3R_23212013_DEL [dm6]	AGCCTACCGAA...	A	2.160e^-4	0.744	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	6272264	2L_6272264_SNP [dm3] 2L_6272264_SNP [dm6]	A	G	2.165e^-4	0.744	DOWNSTREAM CR42735 INTRON Ddr
3R	16741721	3R_16741721_SNP [dm3] 3R_20915999_SNP [dm6]	G	T	2.168e^-4	0.744	INTRON CG31191 & 1 other
3R	10765498	3R_10765498_SNP [dm3] 3R_14939776_SNP [dm6]	T	C	2.179e^-4	0.744	INTERGENIC
2L	17887001	2L_17887001_SNP [dm3] 2L_17887001_SNP [dm6]	G	A	2.188e^-4	0.744	INTERGENIC
3R	8406528	3R_8406528_SNP [dm3] 3R_12580806_SNP [dm6]	C	T	2.192e^-4	0.744	INTRON Octbeta2R
2L	18491699	2L_18491699_SNP [dm3] 2L_18491699_SNP [dm6]	G	A	2.192e^-4	0.744	SPLICE_SITE_REGION kon INTRON kon
3R	9155046	3R_9155046_SNP [dm3] 3R_13329324_SNP [dm6]	T	A	2.193e^-4	0.744	UTR_3_PRIME PK2-R2
3R	20623868	3R_20623868_SNP [dm3] 3R_24798146_SNP [dm6]	C	A	2.193e^-4	0.744	SYNONYMOUS_CODING Ude DOWNSTREAM Ets96B
2R	4421290	2R_4421290_SNP [dm3] 2R_8533785_SNP [dm6]	C	T	2.193e^-4	0.744	INTERGENIC
X	3427818	X_3427818_SNP [dm3] X_3533785_SNP [dm6]	A	G	2.197e^-4	0.744	INTRON CG32791	TF binding site mE1_TFBS_inv
3L	4242123	3L_4242123_SNP [dm3] 3L_4242123_SNP [dm6]	C	T	2.198e^-4	0.744	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16144763	X_16144763_SNP [dm3] X_16250730_SNP [dm6]	A	G	2.198e^-4	0.744	INTERGENIC
3R	16899177	3R_16899177_SNP [dm3] 3R_21073455_SNP [dm6]	T	C	2.198e^-4	0.744	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8537832	2R_8537832_SNP [dm3] 2R_12650327_SNP [dm6]	T	A	2.201e^-4	0.744	DOWNSTREAM CG8778 INTERGENIC
2R	10013719	2R_10013719_SNP [dm3] 2R_14126214_SNP [dm6]	C	T	2.210e^-4	0.744	INTRON Prosap
3R	14680392	3R_14680392_SNP [dm3] 3R_18854670_SNP [dm6]	T	C	2.213e^-4	0.744	INTERGENIC
3R	6960557	3R_6960557_SNP [dm3] 3R_11134835_SNP [dm6]	T	A	2.214e^-4	0.744	INTERGENIC
3R	23999177	3R_23999177_SNP [dm3] 3R_28173455_SNP [dm6]	G	T	2.216e^-4	0.744	INTRON CG34354
3R	25187612	3R_25187612_SNP [dm3] 3R_29361890_SNP [dm6]	A	T	2.218e^-4	0.744	INTERGENIC
3L	23400525	3L_23400525_DEL [dm3] 3L_23407425_DEL [dm6]	AGT	A	2.219e^-4	0.744	INTERGENIC	transposable element FlyBase
2R	17030187	2R_17030187_SNP [dm3] 2R_21142682_SNP [dm6]	G	A	2.224e^-4	0.744	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	6241937	3R_6241937_SNP [dm3] 3R_10416215_SNP [dm6]	T	C	2.228e^-4	0.744	UPSTREAM CG6345 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	14214627	X_14214627_SNP [dm3] X_14320594_SNP [dm6]	C	T	2.232e^-4	0.744	INTERGENIC
2R	17030401	2R_17030401_SNP [dm3] 2R_21142896_SNP [dm6]	T	C	2.232e^-4	0.744	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4002777	3L_4002777_SNP [dm3] 3L_4002777_SNP [dm6]	C	T	2.240e^-4	0.744	UPSTREAM CG14985 INTERGENIC
3R	6960554	3R_6960554_SNP [dm3] 3R_11134832_SNP [dm6]	C	T	2.240e^-4	0.744	INTERGENIC
2L	15317157	2L_15317157_SNP [dm3] 2L_15317157_SNP [dm6]	G	A	2.240e^-4	0.744	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	10765562	3R_10765562_SNP [dm3] 3R_14939840_SNP [dm6]	A	G	2.256e^-4	0.744	INTERGENIC
2L	18484575	2L_18484575_SNP [dm3] 2L_18484575_SNP [dm6]	G	T	2.262e^-4	0.744	UPSTREAM CG10176 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	7722339	2R_7722339_SNP [dm3] 2R_11834834_SNP [dm6]	T	C	2.262e^-4	0.744	INTRON Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22760367	3R_22760367_SNP [dm3] 3R_26934645_SNP [dm6]	G	T	2.276e^-4	0.744	INTRON sda
2L	5141959	2L_5141959_SNP [dm3] 2L_5141959_SNP [dm6]	C	T	2.276e^-4	0.744	INTRON Msp300
2L	18392223	2L_18392223_DEL [dm3] 2L_18392223_DEL [dm6]	TC	T	2.278e^-4	0.744	INTRON Fas3
3L	7780074	3L_7780074_SNP [dm3] 3L_7786974_SNP [dm6]	T	C	2.292e^-4	0.744	INTRON CG32369
3L	13517383	3L_13517383_SNP [dm3] 3L_13524283_SNP [dm6]	C	T	2.294e^-4	0.744	UTR_3_PRIME bru-3
2L	7702848	2L_7702848_SNP [dm3] 2L_7702848_SNP [dm6]	C	G	2.295e^-4	0.744	UTR_5_PRIME Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1528649	3L_1528649_SNP [dm3] 3L_1528649_SNP [dm6]	G	A	2.296e^-4	0.744	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
2L	17877565	2L_17877565_SNP [dm3] 2L_17877565_SNP [dm6]	A	T	2.297e^-4	0.744	INTERGENIC
2L	16841972	2L_16841972_SNP [dm3] 2L_16841972_SNP [dm6]	G	T	2.298e^-4	0.744	DOWNSTREAM CG13284 & 2 others INTERGENIC
X	21977028	X_21977028_DEL [dm3] X_22575192_DEL [dm6]	GCCT	G	2.304e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11044908	3R_11044908_DEL [dm3] 3R_15219186_DEL [dm6]	AT	G	2.306e^-4	0.744	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18811184	2L_18811184_SNP [dm3] 2L_18811184_SNP [dm6]	C	A	2.307e^-4	0.744	START_GAINED CG10570 & 1 other UTR_5_PRIME CG10570 & 1 other UPSTREAM CG10570 & 1 other
3R	13473016	3R_13473016_DEL [dm3] 3R_17647294_DEL [dm6]	AAT	A	2.307e^-4	0.744	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4890283	3L_4890283_SNP [dm3] 3L_4890283_SNP [dm6]	T	C	2.307e^-4	0.744	INTRON CG17150
2L	17713589	2L_17713589_SNP [dm3] 2L_17713589_SNP [dm6]	T	A	2.308e^-4	0.744	INTRON CadN
2L	20383328	2L_20383328_DEL [dm3] 2L_20383328_DEL [dm6]	GCATGGTAATTTCCTGTAAT...	G	2.311e^-4	0.744	UPSTREAM CG16798 INTERGENIC
3L	4811493	3L_4811493_SNP [dm3] 3L_4811493_SNP [dm6]	G	A	2.313e^-4	0.744	SPLICE_SITE_REGION Dhc64C INTRON Dhc64C
3R	24089157	3R_24089157_SNP [dm3] 3R_28263435_SNP [dm6]	T	G	2.314e^-4	0.744	DOWNSTREAM CG43124 INTRON CG43125
2R	3507119	2R_3507119_SNP [dm3] 2R_7619614_SNP [dm6]	C	T	2.322e^-4	0.744	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3R	12119770	3R_12119770_SNP [dm3] 3R_16294048_SNP [dm6]	C	T	2.324e^-4	0.744	SYNONYMOUS_CODING gish INTRON gish
2R	13954270	2R_13954270_SNP [dm3] 2R_18066765_SNP [dm6]	A	T	2.325e^-4	0.744	INTRON CG34386
3L	7794297	3L_7794297_SNP [dm3] 3L_7801197_SNP [dm6]	C	T	2.327e^-4	0.744	INTRON CG32369
2L	22677978	2L_22677978_DEL [dm3] 2L_22785246_DEL [dm6]	TTGAAGCTGTTGAAAGAGAC...	T	2.327e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	27447726	3R_27447726_SNP [dm3] 3R_31622004_SNP [dm6]	C	A	2.329e^-4	0.744	UTR_3_PRIME pasha UPSTREAM kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12660308	2R_12660308_SNP [dm3] 2R_16772803_SNP [dm6]	A	T	2.330e^-4	0.744	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1054577	2L_1054577_SNP [dm3] 2L_1054577_SNP [dm6]	T	A	2.331e^-4	0.744	INTRON S	TF binding site BDTNP1_TFBS_twi
2L	9273328	2L_9273328_SNP [dm3] 2L_9273328_SNP [dm6]	A	C	2.337e^-4	0.744	INTRON Ggamma30A
2R	8542133	2R_8542133_SNP [dm3] 2R_12654628_SNP [dm6]	A	C	2.340e^-4	0.744	SYNONYMOUS_CODING ZnT49B
2L	8118019	2L_8118019_SNP [dm3] 2L_8118019_SNP [dm6]	T	C	2.341e^-4	0.744	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_sens
2R	1392361	2R_1392361_SNP [dm3] 2R_5504856_SNP [dm6]	G	T	2.344e^-4	0.744	INTRON CG30438 & 1 other
3L	23883404	3L_23883404_SNP [dm3] 3L_23890304_SNP [dm6]	T	C	2.350e^-4	0.744	INTRON CG40470
2L	5116261	2L_5116261_SNP [dm3] 2L_5116261_SNP [dm6]	T	A	2.351e^-4	0.744	INTRON Msp300
2L	18588848	2L_18588848_SNP [dm3] 2L_18588848_SNP [dm6]	T	C	2.354e^-4	0.744	INTRON Pde11
2R	18129123	2R_18129123_SNP [dm3] 2R_22241618_SNP [dm6]	T	A	2.354e^-4	0.744	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	1079264	2L_1079264_SNP [dm3] 2L_1079264_SNP [dm6]	C	T	2.356e^-4	0.744	SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
3R	7060355	3R_7060355_SNP [dm3] 3R_11234633_SNP [dm6]	C	A	2.362e^-4	0.744	NON_SYNONYMOUS_CODING Arfip UPSTREAM CG17721	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	12993356	3L_12993356_DEL [dm3] 3L_13000256_DEL [dm6]	ATCCTCATA	A	2.370e^-4	0.745	INTERGENIC
3L	7449717	3L_7449717_SNP [dm3] 3L_7456617_SNP [dm6]	C	T	2.385e^-4	0.745	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad
X	14214110	X_14214110_SNP [dm3] X_14320077_SNP [dm6]	G	A	2.386e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16592058	3R_16592058_SNP [dm3] 3R_20766336_SNP [dm6]	G	T	2.391e^-4	0.745	INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	6641328	3R_6641328_SNP [dm3] 3R_10815606_SNP [dm6]	G	T	2.395e^-4	0.745	SYNONYMOUS_CODING CG4089 UPSTREAM CG14693	TF binding site mE1_TFBS_sens
3R	6958308	3R_6958308_SNP [dm3] 3R_11132586_SNP [dm6]	G	A	2.400e^-4	0.745	INTERGENIC
3L	19218696	3L_19218696_SNP [dm3] 3L_19225596_SNP [dm6]	C	A	2.403e^-4	0.745	INTRON fz2	TF binding site mE1_TFBS_inv
2R	17429258	2R_17429258_SNP [dm3] 2R_21541753_SNP [dm6]	A	T	2.412e^-4	0.745	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2279878	3L_2279878_SNP [dm3] 3L_2279878_SNP [dm6]	T	A	2.416e^-4	0.745	INTERGENIC
3L	6481133	3L_6481133_SNP [dm3] 3L_6488033_SNP [dm6]	T	C	2.421e^-4	0.745	SYNONYMOUS_CODING CG10147 UPSTREAM CG8270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	10430616	2R_10430616_SNP [dm3] 2R_14543111_SNP [dm6]	C	T	2.423e^-4	0.745	INTRON ttv
3R	6983300	3R_6983300_SNP [dm3] 3R_11157578_SNP [dm6]	A	G	2.423e^-4	0.745	INTRON Ugt86Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9154848	3R_9154848_SNP [dm3] 3R_13329126_SNP [dm6]	G	A	2.425e^-4	0.745	UTR_3_PRIME PK2-R2
3L	2659778	3L_2659778_SNP [dm3] 3L_2659778_SNP [dm6]	C	T	2.425e^-4	0.745	INTRON Fife & 1 other
3R	24088645	3R_24088645_SNP [dm3] 3R_28262923_SNP [dm6]	C	T	2.432e^-4	0.745	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	6857167	X_6857167_SNP [dm3] X_6963134_SNP [dm6]	T	C	2.434e^-4	0.745	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site mE1_TFBS_chinmo
3L	11522341	3L_11522341_SNP [dm3] 3L_11529241_SNP [dm6]	G	T	2.434e^-4	0.745	INTRON Mob2
2L	18277211	2L_18277211_DEL [dm3] 2L_18277211_DEL [dm6]	TCTGTATCTTT...	T	2.440e^-4	0.745	INTERGENIC
X	9845166	X_9845166_SNP [dm3] X_9951133_SNP [dm6]	C	A	2.443e^-4	0.745	INTERGENIC
3R	25974983	3R_25974983_SNP [dm3] 3R_30149261_SNP [dm6]	T	G	2.457e^-4	0.745	START_GAINED AdoR UTR_5_PRIME AdoR
3L	15836039	3L_15836039_SNP [dm3] 3L_15842939_SNP [dm6]	A	G	2.460e^-4	0.745	DOWNSTREAM mir-263b INTRON CG32150
3L	14499005	3L_14499005_SNP [dm3] 3L_14505905_SNP [dm6]	T	A	2.464e^-4	0.745	INTRON bbg
3L	10712993	3L_10712993_SNP [dm3] 3L_10719893_SNP [dm6]	A	T	2.466e^-4	0.745	INTERGENIC
2L	6019349	2L_6019349_SNP [dm3] 2L_6019349_SNP [dm6]	T	G	2.468e^-4	0.745	UTR_5_PRIME H2.0	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11207631	3R_11207631_SNP [dm3] 3R_15381909_SNP [dm6]	A	T	2.473e^-4	0.745	UTR_3_PRIME h-cup INTRON Rbp
2L	17893428	2L_17893428_SNP [dm3] 2L_17893428_SNP [dm6]	G	T	2.483e^-4	0.745	UPSTREAM CR43420 INTERGENIC
X	3782594	X_3782594_SNP [dm3] X_3888561_SNP [dm6]	T	G	2.483e^-4	0.745	INTRON CG15239
3R	13399467	3R_13399467_SNP [dm3] 3R_17573745_SNP [dm6]	C	T	2.489e^-4	0.745	INTERGENIC
3L	15551331	3L_15551331_SNP [dm3] 3L_15558231_SNP [dm6]	T	A	2.489e^-4	0.745	INTRON AGO2
2R	18132473	2R_18132473_SNP [dm3] 2R_22244968_SNP [dm6]	T	C	2.490e^-4	0.745	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2L	1952887	2L_1952887_SNP [dm3] 2L_1952887_SNP [dm6]	A	G	2.495e^-4	0.745	INTRON erm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16898767	3R_16898767_SNP [dm3] 3R_21073045_SNP [dm6]	G	T	2.501e^-4	0.745	UPSTREAM dmrt93B INTRON r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4237623	3L_4237623_SNP [dm3] 3L_4237623_SNP [dm6]	T	A	2.502e^-4	0.745	INTERGENIC
X	16230689	X_16230689_SNP [dm3] X_16336656_SNP [dm6]	A	G	2.509e^-4	0.745	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11628759	X_11628759_SNP [dm3] X_11734726_SNP [dm6]	A	G	2.522e^-4	0.745	UPSTREAM inaF-A INTRON CG15221	TF binding site mE1_TFBS_chinmo
3L	19205114	3L_19205114_SNP [dm3] 3L_19212014_SNP [dm6]	A	T	2.522e^-4	0.745	INTRON fz2
3R	16963156	3R_16963156_SNP [dm3] 3R_21137434_SNP [dm6]	G	T	2.525e^-4	0.745	SYNONYMOUS_CODING Ubpy UPSTREAM meigo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7280489	3L_7280489_SNP [dm3] 3L_7287389_SNP [dm6]	G	T	2.525e^-4	0.745	INTRON unc-13-4A
3L	9372926	3L_9372926_SNP [dm3] 3L_9379826_SNP [dm6]	A	G	2.535e^-4	0.745	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	3475660	2R_3475660_SNP [dm3] 2R_7588155_SNP [dm6]	A	T	2.535e^-4	0.745	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
3R	16994945	3R_16994945_SNP [dm3] 3R_21169223_SNP [dm6]	A	G	2.539e^-4	0.745	INTRON SNF4Agamma
3L	4255086	3L_4255086_SNP [dm3] 3L_4255086_SNP [dm6]	T	C	2.539e^-4	0.745	SYNONYMOUS_CODING CG1265 UPSTREAM ago DOWNSTREAM CG15011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11216535	3L_11216535_SNP [dm3] 3L_11223435_SNP [dm6]	A	C	2.540e^-4	0.745	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1055182	2L_1055182_SNP [dm3] 2L_1055182_SNP [dm6]	A	T	2.544e^-4	0.745	INTRON S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18277204	2L_18277204_INS [dm3] 2L_18277204_INS [dm6]	A	AAT	2.551e^-4	0.745	INTERGENIC
2L	18277207	2L_18277207_SNP [dm3] 2L_18277207_SNP [dm6]	G	A	2.551e^-4	0.745	INTERGENIC
3L	19256666	3L_19256666_SNP [dm3] 3L_19263566_SNP [dm6]	G	T	2.551e^-4	0.745	UPSTREAM CG9666 & 1 other INTRON Max	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16473868	2L_16473868_SNP [dm3] 2L_16473868_SNP [dm6]	G	A	2.557e^-4	0.745	INTRON dac
2R	3016138	2R_3016138_SNP [dm3] 2R_7128633_SNP [dm6]	A	G	2.576e^-4	0.75	NON_SYNONYMOUS_CODING Cyp9b1 DOWNSTREAM esn
2L	17711905	2L_17711905_SNP [dm3] 2L_17711905_SNP [dm6]	A	G	2.594e^-4	0.754	INTRON CadN
2L	2322005	2L_2322005_SNP [dm3] 2L_2322005_SNP [dm6]	T	C	2.608e^-4	0.755	INTRON CG9967 & 1 other
2R	16990039	2R_16990039_SNP [dm3] 2R_21102534_SNP [dm6]	G	A	2.608e^-4	0.755	UTR_5_PRIME ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	6406353	3R_6406353_SNP [dm3] 3R_10580631_SNP [dm6]	T	C	2.619e^-4	0.757	DOWNSTREAM hth INTRON hth
2R	19616545	2R_19616545_SNP [dm3] 2R_23729022_SNP [dm6]	T	G	2.633e^-4	0.76	INTRON Sesn
2L	17713219	2L_17713219_SNP [dm3] 2L_17713219_SNP [dm6]	T	C	2.655e^-4	0.765	INTRON CadN
3L	23944819	3L_23944819_SNP [dm3] 3L_23951719_SNP [dm6]	A	C	2.655e^-4	0.765	INTRON CG40470
2L	17921695	2L_17921695_SNP [dm3] 2L_17921695_SNP [dm6]	A	C	2.663e^-4	0.765	INTERGENIC
2L	3912488	2L_3912488_SNP [dm3] 2L_3912488_SNP [dm6]	G	A	2.675e^-4	0.768	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1455745	2L_1455745_SNP [dm3] 2L_1455745_SNP [dm6]	G	A	2.685e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18283854	2L_18283854_SNP [dm3] 2L_18283854_SNP [dm6]	A	T	2.694e^-4	0.771	DOWNSTREAM CG31787 INTERGENIC
X	11362095	X_11362095_SNP [dm3] X_11468062_SNP [dm6]	T	G	2.698e^-4	0.771	INTRON CG43155
X	11084780	X_11084780_SNP [dm3] X_11190747_SNP [dm6]	G	A	2.702e^-4	0.771	INTERGENIC
2L	1455746	2L_1455746_SNP [dm3] 2L_1455746_SNP [dm6]	T	C	2.720e^-4	0.775	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3492145	2L_3492145_SNP [dm3] 2L_3492145_SNP [dm6]	G	A	2.724e^-4	0.775	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18138776	2R_18138776_SNP [dm3] 2R_22251271_SNP [dm6]	G	A	2.733e^-4	0.776	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18127374	3L_18127374_SNP [dm3] 3L_18134274_SNP [dm6]	T	G	2.737e^-4	0.776	INTERGENIC
2L	7086982	2L_7086982_SNP [dm3] 2L_7086982_SNP [dm6]	G	T	2.743e^-4	0.776	INTERGENIC
3L	1495747	3L_1495747_SNP [dm3] 3L_1495747_SNP [dm6]	C	T	2.744e^-4	0.776	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
3L	8647556	3L_8647556_SNP [dm3] 3L_8654456_SNP [dm6]	C	T	2.768e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12098776	3L_12098776_SNP [dm3] 3L_12105676_SNP [dm6]	T	C	2.771e^-4	0.778	INTERGENIC
2L	18535680	2L_18535680_SNP [dm3] 2L_18535680_SNP [dm6]	G	A	2.772e^-4	0.778	SPLICE_SITE_REGION Pde11 INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3R	16993294	3R_16993294_SNP [dm3] 3R_21167572_SNP [dm6]	C	T	2.784e^-4	0.778	INTRON SNF4Agamma & 1 other
3L	16435335	3L_16435335_INS [dm3] 3L_16442235_INS [dm6]	C	CTGC	2.785e^-4	0.778	INTRON CG33158 & 1 other
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	2.785e^-4	0.778	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17087368	2R_17087368_SNP [dm3] 2R_21199863_SNP [dm6]	T	C	2.786e^-4	0.778	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	1420040	2L_1420040_SNP [dm3] 2L_1420040_SNP [dm6]	G	A	2.786e^-4	0.778	SYNONYMOUS_CODING lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	13511839	X_13511839_SNP [dm3] X_13617806_SNP [dm6]	C	T	2.788e^-4	0.778	SPLICE_SITE_REGION Tango2 INTRON Tango2	TF binding site BDTNP1_TFBS_dl
3R	7058147	3R_7058147_SNP [dm3] 3R_11232425_SNP [dm6]	G	A	2.792e^-4	0.778	UTR_3_PRIME CG14701 UPSTREAM CG17187 DOWNSTREAM Arfip	TF binding site BDTNP1_TFBS_Med
2L	18277198	2L_18277198_SNP [dm3] 2L_18277198_SNP [dm6]	C	T	2.811e^-4	0.78	INTERGENIC
X	13511820	X_13511820_SNP [dm3] X_13617787_SNP [dm6]	A	T	2.813e^-4	0.78	INTRON Tango2	TF binding site BDTNP1_TFBS_dl
3L	479337	3L_479337_SNP [dm3] 3L_479337_SNP [dm6]	C	T	2.815e^-4	0.78	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5142091	2L_5142091_SNP [dm3] 2L_5142091_SNP [dm6]	G	A	2.820e^-4	0.781	SYNONYMOUS_CODING Msp300
3R	13577920	3R_13577920_SNP [dm3] 3R_17752198_SNP [dm6]	G	T	2.828e^-4	0.782	SYNONYMOUS_CODING TyrR
X	7892719	X_7892719_SNP [dm3] X_7998686_SNP [dm6]	C	A	2.834e^-4	0.782	UPSTREAM Tbh INTRON Tbh
3R	17035700	3R_17035700_SNP [dm3] 3R_21209978_SNP [dm6]	G	C	2.841e^-4	0.782	INTRON SNF4Agamma
2L	8147659	2L_8147659_SNP [dm3] 2L_8147659_SNP [dm6]	T	G	2.844e^-4	0.782	SYNONYMOUS_CODING CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1609779	X_1609779_DEL [dm3] X_1715746_DEL [dm6]	ACGCACCAGGACACCA...	A	2.870e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16764348	2R_16764348_SNP [dm3] 2R_20876843_SNP [dm6]	T	C	2.872e^-4	0.782	INTRON Ipk1
3L	2099391	3L_2099391_SNP [dm3] 3L_2099391_SNP [dm6]	G	C	2.872e^-4	0.782	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16718710	3L_16718710_SNP [dm3] 3L_16725610_SNP [dm6]	A	C	2.876e^-4	0.782	UTR_3_PRIME CG13026 UPSTREAM PGRP-SB2 DOWNSTREAM CG13031
2L	8233992	2L_8233992_SNP [dm3] 2L_8233992_SNP [dm6]	T	C	2.880e^-4	0.782	INTRON Pvr
X	11628789	X_11628789_SNP [dm3] X_11734756_SNP [dm6]	C	A	2.881e^-4	0.782	UPSTREAM inaF-A INTRON CG15221	TF binding site mE1_TFBS_chinmo
X	16231597	X_16231597_INS [dm3] X_16337564_INS [dm6]	T	TTA	2.893e^-4	0.782	INTRON Dsp1	TF binding site mE1_TFBS_cad
X	21976860	X_21976860_SNP [dm3] X_22575024_SNP [dm6]	T	A	2.896e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15606231	3L_15606231_SNP [dm3] 3L_15613131_SNP [dm6]	T	C	2.905e^-4	0.782	UPSTREAM CG13449 DOWNSTREAM comm3 INTERGENIC
2L	18785772	2L_18785772_SNP [dm3] 2L_18785772_SNP [dm6]	G	A	2.909e^-4	0.782	INTRON ham
3L	12441139	3L_12441139_SNP [dm3] 3L_12448039_SNP [dm6]	T	G	2.917e^-4	0.782	INTERGENIC
2L	18296450	2L_18296450_SNP [dm3] 2L_18296450_SNP [dm6]	C	T	2.919e^-4	0.782	SYNONYMOUS_CODING CG5790	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	10588800	3L_10588800_SNP [dm3] 3L_10595700_SNP [dm6]	G	A	2.930e^-4	0.782	INTERGENIC
2L	18618157	2L_18618157_SNP [dm3] 2L_18618157_SNP [dm6]	C	A	2.931e^-4	0.782	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	21958103	X_21958103_SNP [dm3] X_22556267_SNP [dm6]	A	C	2.932e^-4	0.782	INTERGENIC
3L	10713181	3L_10713181_SNP [dm3] 3L_10720081_SNP [dm6]	T	A	2.933e^-4	0.782	INTERGENIC
3R	17668066	3R_17668066_SNP [dm3] 3R_21842344_SNP [dm6]	G	T	2.936e^-4	0.782	DOWNSTREAM Gr93b INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	17829531	2R_17829531_SNP [dm3] 2R_21942026_SNP [dm6]	T	C	2.938e^-4	0.782	INTRON Fili	TF binding site mE1_TFBS_cad
3R	11220353	3R_11220353_INS [dm3] 3R_15394631_INS [dm6]	A	AT	2.940e^-4	0.782	INTRON Rbp
3R	12748534	3R_12748534_SNP [dm3] 3R_16922812_SNP [dm6]	C	G	2.941e^-4	0.782	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10678470	2R_10678470_SNP [dm3] 2R_14790965_SNP [dm6]	G	A	2.948e^-4	0.782	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8920354	3R_8920354_SNP [dm3] 3R_13094632_SNP [dm6]	G	A	2.956e^-4	0.782	INTRON timeout
2R	3262135	2R_3262135_SNP [dm3] 2R_7374630_SNP [dm6]	A	G	2.962e^-4	0.782	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	20887205	3R_20887205_SNP [dm3] 3R_25061483_SNP [dm6]	C	T	2.963e^-4	0.782	SYNONYMOUS_CODING Unc-13-4B
3L	1493208	3L_1493208_SNP [dm3] 3L_1493208_SNP [dm6]	C	G	2.967e^-4	0.782	SYNONYMOUS_CODING CG12084	TF binding site mE1_TFBS_cad
3R	16891371	3R_16891371_SNP [dm3] 3R_21065649_SNP [dm6]	G	T	2.968e^-4	0.782	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	13788537	2R_13788537_SNP [dm3] 2R_17901032_SNP [dm6]	C	T	2.969e^-4	0.782	INTRON Elk
X	7892732	X_7892732_SNP [dm3] X_7998699_SNP [dm6]	T	C	2.974e^-4	0.782	UPSTREAM Tbh INTRON Tbh
X	2727058	X_2727058_SNP [dm3] X_2833025_SNP [dm6]	C	G	2.975e^-4	0.782	INTRON kirre
X	13511848	X_13511848_SNP [dm3] X_13617815_SNP [dm6]	G	A	2.976e^-4	0.782	SPLICE_SITE_REGION Tango2 SYNONYMOUS_CODING Tango2	TF binding site BDTNP1_TFBS_dl
2L	10459116	2L_10459116_SNP [dm3] 2L_10459116_SNP [dm6]	T	A	2.982e^-4	0.782	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24440834	3R_24440834_SNP [dm3] 3R_28615112_SNP [dm6]	G	A	2.987e^-4	0.782	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18535877	2L_18535877_SNP [dm3] 2L_18535877_SNP [dm6]	T	C	2.989e^-4	0.782	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
2L	18535879	2L_18535879_SNP [dm3] 2L_18535879_SNP [dm6]	T	A	2.989e^-4	0.782	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
2L	18535886	2L_18535886_SNP [dm3] 2L_18535886_SNP [dm6]	C	T	2.989e^-4	0.782	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3R	16942271	3R_16942271_SNP [dm3] 3R_21116549_SNP [dm6]	G	C	2.999e^-4	0.783	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13250259	3L_13250259_INS [dm3] 3L_13257159_INS [dm6]	A	AA	3.001e^-4	0.783	INTRON caps
3L	13540598	3L_13540598_SNP [dm3] 3L_13547498_SNP [dm6]	G	A	3.002e^-4	0.783	INTRON bru-3	TF binding site mE1_TFBS_inv
3R	10872916	3R_10872916_DEL [dm3] 3R_15047194_DEL [dm6]	AAA	A	3.012e^-4	0.784	INTERGENIC
X	6609169	X_6609169_SNP [dm3] X_6715136_SNP [dm6]	A	G	3.017e^-4	0.784	INTRON CG14441
2R	17492385	2R_17492385_SNP [dm3] 2R_21604880_SNP [dm6]	T	C	3.023e^-4	0.785	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4211944	3L_4211944_SNP [dm3] 3L_4211944_SNP [dm6]	T	C	3.032e^-4	0.785	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	5697001	3L_5697001_SNP [dm3] 3L_5703901_SNP [dm6]	T	A	3.034e^-4	0.785	INTRON sif
3L	11525690	3L_11525690_SNP [dm3] 3L_11532590_SNP [dm6]	G	C	3.038e^-4	0.785	INTRON Mob2
2L	1074638	2L_1074638_SNP [dm3] 2L_1074638_SNP [dm6]	A	G	3.069e^-4	0.789	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	15835970	3L_15835970_SNP [dm3] 3L_15842870_SNP [dm6]	A	G	3.075e^-4	0.789	DOWNSTREAM mir-263b INTRON CG32150
2R	8183654	2R_8183654_SNP [dm3] 2R_12296149_SNP [dm6]	C	T	3.076e^-4	0.789	DOWNSTREAM CR45271 INTRON CG42700
3L	23214743	3L_23214743_SNP [dm3] 3L_23221643_SNP [dm6]	G	C	3.088e^-4	0.789	INTRON nAChRalpha4	transposable element FlyBase
3L	6908921	3L_6908921_SNP [dm3] 3L_6915821_SNP [dm6]	A	G	3.089e^-4	0.789	UPSTREAM Prat2 INTERGENIC
3L	1495375	3L_1495375_SNP [dm3] 3L_1495375_SNP [dm6]	T	A	3.095e^-4	0.789	INTRON CG12084
2L	18485939	2L_18485939_SNP [dm3] 2L_18485939_SNP [dm6]	A	T	3.096e^-4	0.789	UTR_5_PRIME CG10176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad
3R	23917068	3R_23917068_SNP [dm3] 3R_28091346_SNP [dm6]	C	T	3.100e^-4	0.789	DOWNSTREAM CG34362 INTERGENIC
3L	16746798	3L_16746798_SNP [dm3] 3L_16753698_SNP [dm6]	A	G	3.103e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10873048	3R_10873048_SNP [dm3] 3R_15047326_SNP [dm6]	C	T	3.107e^-4	0.789	INTERGENIC
3R	3880537	3R_3880537_SNP [dm3] 3R_8054815_SNP [dm6]	C	G	3.113e^-4	0.789	INTRON CG43060
3R	13468255	3R_13468255_SNP [dm3] 3R_17642533_SNP [dm6]	C	T	3.114e^-4	0.789	INTRON CG43175
2L	17787390	2L_17787390_SNP [dm3] 2L_17787390_SNP [dm6]	C	A	3.115e^-4	0.789	UTR_3_PRIME CadN2
3R	25975629	3R_25975629_SNP [dm3] 3R_30149907_SNP [dm6]	T	G	3.130e^-4	0.789	UPSTREAM AdoR INTERGENIC
3L	11142535	3L_11142535_SNP [dm3] 3L_11149435_SNP [dm6]	T	G	3.132e^-4	0.789	DOWNSTREAM CG6216 INTRON CG32082
2L	1956654	2L_1956654_SNP [dm3] 2L_1956654_SNP [dm6]	C	T	3.135e^-4	0.789	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	23291066	3R_23291066_SNP [dm3] 3R_27465344_SNP [dm6]	C	T	3.142e^-4	0.789	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24089095	3R_24089095_SNP [dm3] 3R_28263373_SNP [dm6]	G	A	3.143e^-4	0.789	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	19037763	3R_19037763_SNP [dm3] 3R_23212041_SNP [dm6]	T	A	3.143e^-4	0.789	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8080148	3R_8080148_SNP [dm3] 3R_12254426_SNP [dm6]	T	C	3.145e^-4	0.789	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15081191	3L_15081191_SNP [dm3] 3L_15088091_SNP [dm6]	C	T	3.148e^-4	0.789	INTRON cp309
3L	2411787	3L_2411787_SNP [dm3] 3L_2411787_SNP [dm6]	T	A	3.150e^-4	0.789	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2685132	2L_2685132_SNP [dm3] 2L_2685132_SNP [dm6]	G	A	3.150e^-4	0.789	INTRON CG31690
2L	10620568	2L_10620568_SNP [dm3] 2L_10620568_SNP [dm6]	T	G	3.155e^-4	0.789	SYNONYMOUS_CODING Trim9
X	21977033	X_21977033_DEL [dm3] X_22575197_DEL [dm6]	CACCGAT	C	3.166e^-4	0.79	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	21261100	2L_21261100_SNP [dm3] 2L_21261100_SNP [dm6]	G	A	3.170e^-4	0.79	UPSTREAM l_2_k14505 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	6336295	2R_6336295_DEL [dm3] 2R_10448790_DEL [dm6]	TAGTGATTTAATAGT...	T	3.171e^-4	0.79	DOWNSTREAM Cyp49a1 INTRON Galphao
2L	21319027	2L_21319027_SNP [dm3] 2L_21319027_SNP [dm6]	T	C	3.179e^-4	0.791	SYNONYMOUS_CODING crc DOWNSTREAM CR44785
2R	17521656	2R_17521656_SNP [dm3] 2R_21634151_SNP [dm6]	A	G	3.183e^-4	0.791	NON_SYNONYMOUS_CODING CG15674 UPSTREAM CG10321 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	17769316	2L_17769316_SNP [dm3] 2L_17769316_SNP [dm6]	C	G	3.190e^-4	0.791	INTRON CadN
3L	2283519	3L_2283519_SNP [dm3] 3L_2283519_SNP [dm6]	G	T	3.194e^-4	0.791	INTRON MsR2
X	13511857	X_13511857_SNP [dm3] X_13617824_SNP [dm6]	G	C	3.210e^-4	0.791	SYNONYMOUS_CODING Tango2	TF binding site BDTNP1_TFBS_dl
2L	18075126	2L_18075126_SNP [dm3] 2L_18075126_SNP [dm6]	C	A	3.210e^-4	0.791	INTERGENIC
2L	9273362	2L_9273362_DEL [dm3] 2L_9273362_DEL [dm6]	CTCAGAGG	C	3.210e^-4	0.791	INTRON Ggamma30A
3R	8937251	3R_8937251_DEL [dm3] 3R_13111529_DEL [dm6]	CGTGTGT	C	3.211e^-4	0.791	INTRON timeout
2L	16841973	2L_16841973_SNP [dm3] 2L_16841973_SNP [dm6]	T	C	3.216e^-4	0.791	DOWNSTREAM CG13284 & 2 others INTERGENIC
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	3.220e^-4	0.791	INTERGENIC
2L	14496088	2L_14496088_SNP [dm3] 2L_14496088_SNP [dm6]	G	C	3.224e^-4	0.791	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC
3L	12944773	3L_12944773_SNP [dm3] 3L_12951673_SNP [dm6]	T	C	3.225e^-4	0.791	INTERGENIC
3L	15595802	3L_15595802_SNP [dm3] 3L_15602702_SNP [dm6]	A	G	3.229e^-4	0.791	UTR_3_PRIME RhoGAP71E INTRON RhoGAP71E
3R	24100083	3R_24100083_SNP [dm3] 3R_28274361_SNP [dm6]	T	A	3.242e^-4	0.792	INTERGENIC
3L	8366817	3L_8366817_SNP [dm3] 3L_8373717_SNP [dm6]	C	T	3.243e^-4	0.792	INTRON ImpE1
2L	9273449	2L_9273449_SNP [dm3] 2L_9273449_SNP [dm6]	C	T	3.243e^-4	0.792	INTRON Ggamma30A
3L	9795681	3L_9795681_SNP [dm3] 3L_9802581_SNP [dm6]	G	A	3.257e^-4	0.793	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10318487	3R_10318487_SNP [dm3] 3R_14492765_SNP [dm6]	T	C	3.258e^-4	0.793	INTERGENIC
2R	17583791	2R_17583791_SNP [dm3] 2R_21696286_SNP [dm6]	A	G	3.265e^-4	0.794	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
3L	17996283	3L_17996283_SNP [dm3] 3L_18003183_SNP [dm6]	C	A	3.277e^-4	0.796	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8147516	2L_8147516_SNP [dm3] 2L_8147516_SNP [dm6]	A	C	3.284e^-4	0.796	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23214740	3L_23214740_SNP [dm3] 3L_23221640_SNP [dm6]	T	A	3.287e^-4	0.796	INTRON nAChRalpha4	transposable element FlyBase
3R	8870573	3R_8870573_SNP [dm3] 3R_13044851_SNP [dm6]	A	T	3.291e^-4	0.796	UTR_5_PRIME Hsc70-2 DOWNSTREAM CG11670 & 1 other
2L	9303181	2L_9303181_SNP [dm3] 2L_9303181_SNP [dm6]	G	A	3.295e^-4	0.796	DOWNSTREAM Ggamma30A INTERGENIC
3R	8661305	3R_8661305_DEL [dm3] 3R_12835583_DEL [dm6]	TT	T	3.302e^-4	0.796	INTERGENIC
3L	3785248	3L_3785248_SNP [dm3] 3L_3785248_SNP [dm6]	T	C	3.312e^-4	0.796	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
X	21976851	X_21976851_SNP [dm3] X_22575015_SNP [dm6]	C	A	3.314e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11061038	2L_11061038_DEL [dm3] 2L_11061038_DEL [dm6]	ATCA	A	3.324e^-4	0.796	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19533965	2L_19533965_INS [dm3] 2L_19533965_INS [dm6]	T	TTGCTT	3.326e^-4	0.796	DOWNSTREAM CG10137 INTRON CG33116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	9333278	2R_9333278_SNP [dm3] 2R_13445773_SNP [dm6]	T	A	3.331e^-4	0.796	UTR_3_PRIME CG30062 UPSTREAM cnn INTRON cnn
2L	762594	2L_762594_SNP [dm3] 2L_762594_SNP [dm6]	C	T	3.332e^-4	0.796	DOWNSTREAM GABA-B-R3 INTERGENIC
3L	13175762	3L_13175762_SNP [dm3] 3L_13182662_SNP [dm6]	C	T	3.337e^-4	0.796	INTERGENIC
3R	8947937	3R_8947937_SNP [dm3] 3R_13122215_SNP [dm6]	A	T	3.341e^-4	0.796	UTR_3_PRIME 2mit INTRON timeout
2L	3490496	2L_3490496_SNP [dm3] 2L_3490496_SNP [dm6]	G	A	3.343e^-4	0.796	INTRON CG15414
2L	18313236	2L_18313236_SNP [dm3] 2L_18313236_SNP [dm6]	A	C	3.351e^-4	0.796	DOWNSTREAM CR44489 INTERGENIC
3L	3785266	3L_3785266_SNP [dm3] 3L_3785266_SNP [dm6]	G	T	3.352e^-4	0.796	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
2L	1455737	2L_1455737_SNP [dm3] 2L_1455737_SNP [dm6]	G	A	3.354e^-4	0.796	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18657671	3R_18657671_SNP [dm3] 3R_22831949_SNP [dm6]	T	C	3.357e^-4	0.796	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26083001	3R_26083001_SNP [dm3] 3R_30257279_SNP [dm6]	C	T	3.369e^-4	0.796	INTERGENIC
3R	21236034	3R_21236034_SNP [dm3] 3R_25410312_SNP [dm6]	C	T	3.371e^-4	0.796	INTRON Fur1
3R	19137971	3R_19137971_SNP [dm3] 3R_23312249_SNP [dm6]	T	A	3.372e^-4	0.796	INTRON pnt
2L	5804671	2L_5804671_INS [dm3] 2L_5804671_INS [dm6]	T	TGCTTATCT	3.380e^-4	0.796	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	16231592	X_16231592_SNP [dm3] X_16337559_SNP [dm6]	T	G	3.385e^-4	0.796	SPLICE_SITE_REGION Dsp1 INTRON Dsp1	TF binding site mE1_TFBS_cad
3R	7310534	3R_7310534_SNP [dm3] 3R_11484812_SNP [dm6]	G	T	3.389e^-4	0.796	INTERGENIC
2R	19616522	2R_19616522_INS [dm3] 2R_23728999_INS [dm6]	A	ACCAT	3.393e^-4	0.796	INTRON Sesn
2L	16036481	2L_16036481_SNP [dm3] 2L_16036481_SNP [dm6]	A	T	3.396e^-4	0.796	INTRON beat-Ic	TF binding site mE1_TFBS_cad
3L	15835959	3L_15835959_SNP [dm3] 3L_15842859_SNP [dm6]	G	T	3.403e^-4	0.796	DOWNSTREAM mir-263b INTRON CG32150
2L	18535565	2L_18535565_SNP [dm3] 2L_18535565_SNP [dm6]	G	T	3.404e^-4	0.796	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3R	17509093	3R_17509093_SNP [dm3] 3R_21683371_SNP [dm6]	A	G	3.411e^-4	0.796	INTRON CG31176	TF binding site mE1_TFBS_cad
2L	5966700	2L_5966700_SNP [dm3] 2L_5966700_SNP [dm6]	T	A	3.413e^-4	0.796	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24817741	3R_24817741_SNP [dm3] 3R_28992019_SNP [dm6]	C	G	3.414e^-4	0.796	DOWNSTREAM wat INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15456467	3L_15456467_SNP [dm3] 3L_15463367_SNP [dm6]	A	C	3.415e^-4	0.796	INTERGENIC
3R	8406526	3R_8406526_SNP [dm3] 3R_12580804_SNP [dm6]	C	T	3.426e^-4	0.797	INTRON Octbeta2R
3R	9429665	3R_9429665_SNP [dm3] 3R_13603943_SNP [dm6]	T	G	3.428e^-4	0.797	INTERGENIC
2L	13040146	2L_13040146_SNP [dm3] 2L_13040146_SNP [dm6]	A	G	3.431e^-4	0.797	INTRON CG9932
2R	10012744	2R_10012744_SNP [dm3] 2R_14125239_SNP [dm6]	G	T	3.436e^-4	0.797	INTRON Prosap
2R	8550088	2R_8550088_SNP [dm3] 2R_12662583_SNP [dm6]	C	T	3.444e^-4	0.797	UTR_5_PRIME nemy UPSTREAM nemy INTRON nemy
3L	5392635	3L_5392635_SNP [dm3] 3L_5399535_SNP [dm6]	T	C	3.445e^-4	0.797	INTERGENIC
3R	24102446	3R_24102446_DEL [dm3] 3R_28276724_DEL [dm6]	GCCCCT	G	3.466e^-4	0.8	INTERGENIC
2R	10013722	2R_10013722_SNP [dm3] 2R_14126217_SNP [dm6]	T	C	3.467e^-4	0.8	INTRON Prosap
3R	13926655	3R_13926655_DEL [dm3] 3R_18100933_DEL [dm6]	GCTGTCTAGAGTAATATG...	G	3.488e^-4	0.804	INTRON sr
X	8338355	X_8338355_DEL [dm3] X_8444322_DEL [dm6]	AA	A	3.492e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17030949	3R_17030949_SNP [dm3] 3R_21205227_SNP [dm6]	C	T	3.503e^-4	0.805	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	24817471	3R_24817471_SNP [dm3] 3R_28991749_SNP [dm6]	A	G	3.504e^-4	0.805	INTERGENIC
3R	18657990	3R_18657990_SNP [dm3] 3R_22832268_SNP [dm6]	A	T	3.512e^-4	0.805	INTERGENIC
3L	10457100	3L_10457100_SNP [dm3] 3L_10464000_SNP [dm6]	C	T	3.517e^-4	0.805	SYNONYMOUS_CODING CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
3R	10865330	3R_10865330_SNP [dm3] 3R_15039608_SNP [dm6]	G	T	3.524e^-4	0.805	EXON CR44944	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14459218	2L_14459218_SNP [dm3] 2L_14459218_SNP [dm6]	C	A	3.533e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	21885364	3R_21885364_SNP [dm3] 3R_26059642_SNP [dm6]	T	C	3.543e^-4	0.805	SYNONYMOUS_CODING CG14544 UPSTREAM RpL34a	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13625689	3L_13625689_SNP [dm3] 3L_13632589_SNP [dm6]	T	A	3.547e^-4	0.805	INTRON bru-3
3R	6721464	3R_6721464_SNP [dm3] 3R_10895742_SNP [dm6]	A	G	3.556e^-4	0.805	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	3.559e^-4	0.805	INTERGENIC
3L	10519956	3L_10519956_DEL [dm3] 3L_10526856_DEL [dm6]	TGCTGACT	T	3.563e^-4	0.805	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16773550	3R_16773550_SNP [dm3] 3R_20947828_SNP [dm6]	G	C	3.570e^-4	0.805	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	6640350	3R_6640350_SNP [dm3] 3R_10814628_SNP [dm6]	C	A	3.578e^-4	0.805	NON_SYNONYMOUS_CODING CG14693 UPSTREAM CG14693 & 1 other
3R	6413746	3R_6413746_SNP [dm3] 3R_10588024_SNP [dm6]	G	A	3.588e^-4	0.805	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27225737	3R_27225737_SNP [dm3] 3R_31400015_SNP [dm6]	C	T	3.589e^-4	0.805	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23790230	3L_23790230_SNP [dm3] 3L_23797130_SNP [dm6]	T	C	3.594e^-4	0.805	INTERGENIC	transposable element FlyBase
3L	5301483	3L_5301483_SNP [dm3] 3L_5308383_SNP [dm6]	C	A	3.595e^-4	0.805	INTERGENIC
2L	10459113	2L_10459113_SNP [dm3] 2L_10459113_SNP [dm6]	C	T	3.596e^-4	0.805	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8756939	2L_8756939_SNP [dm3] 2L_8756939_SNP [dm6]	G	C	3.600e^-4	0.805	INTERGENIC
3L	12993347	3L_12993347_SNP [dm3] 3L_13000247_SNP [dm6]	G	T	3.602e^-4	0.805	INTERGENIC
3L	9633246	3L_9633246_SNP [dm3] 3L_9640146_SNP [dm6]	T	C	3.604e^-4	0.805	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1054037	2L_1054037_SNP [dm3] 2L_1054037_SNP [dm6]	A	T	3.608e^-4	0.805	INTRON S
2R	13296952	2R_13296952_SNP [dm3] 2R_17409447_SNP [dm6]	A	G	3.608e^-4	0.805	SYNONYMOUS_CODING CG30101
2R	17292240	2R_17292240_SNP [dm3] 2R_21404735_SNP [dm6]	T	G	3.612e^-4	0.805	INTRON Sdc
2L	18523706	2L_18523706_SNP [dm3] 2L_18523706_SNP [dm6]	T	C	3.618e^-4	0.805	INTRON CG10211 EXON CR44903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12660324	2R_12660324_SNP [dm3] 2R_16772819_SNP [dm6]	C	T	3.623e^-4	0.805	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	683550	2L_683550_SNP [dm3] 2L_683550_SNP [dm6]	A	T	3.626e^-4	0.805	INTRON ds
2L	13816323	2L_13816323_SNP [dm3] 2L_13816323_SNP [dm6]	C	T	3.630e^-4	0.805	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad
2L	17757416	2L_17757416_SNP [dm3] 2L_17757416_SNP [dm6]	G	A	3.644e^-4	0.805	INTRON CadN	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10956782	3R_10956782_SNP [dm3] 3R_15131060_SNP [dm6]	G	A	3.646e^-4	0.805	UPSTREAM mir-2493 INTRON CG42788	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19718066	2R_19718066_SNP [dm3] 2R_23830543_SNP [dm6]	C	T	3.653e^-4	0.805	SYNONYMOUS_CODING CG5549
2L	18785704	2L_18785704_SNP [dm3] 2L_18785704_SNP [dm6]	T	G	3.662e^-4	0.805	INTRON ham
X	13141649	X_13141649_SNP [dm3] X_13247616_SNP [dm6]	G	A	3.662e^-4	0.805	INTRON mew
3L	2173024	3L_2173024_SNP [dm3] 3L_2173024_SNP [dm6]	T	C	3.672e^-4	0.805	UTR_3_PRIME CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
2L	18277193	2L_18277193_SNP [dm3] 2L_18277193_SNP [dm6]	C	T	3.680e^-4	0.805	INTERGENIC
3R	17509321	3R_17509321_SNP [dm3] 3R_21683599_SNP [dm6]	T	C	3.682e^-4	0.805	INTRON CG31176	TF binding site mE1_TFBS_cad
3R	27225757	3R_27225757_SNP [dm3] 3R_31400035_SNP [dm6]	T	G	3.685e^-4	0.805	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9273402	2L_9273402_SNP [dm3] 2L_9273402_SNP [dm6]	A	T	3.687e^-4	0.805	INTRON Ggamma30A
2L	13816188	2L_13816188_SNP [dm3] 2L_13816188_SNP [dm6]	G	A	3.688e^-4	0.805	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9997864	X_9997864_SNP [dm3] X_10103831_SNP [dm6]	A	G	3.692e^-4	0.805	INTRON RhoU
3R	17507873	3R_17507873_SNP [dm3] 3R_21682151_SNP [dm6]	A	G	3.693e^-4	0.805	INTRON CG31176
2R	19616546	2R_19616546_INS [dm3] 2R_23729023_INS [dm6]	A	ATTGTTATGT	3.695e^-4	0.805	INTRON Sesn
3L	466196	3L_466196_SNP [dm3] 3L_466196_SNP [dm6]	A	G	3.706e^-4	0.805	INTRON klar
2L	17713251	2L_17713251_DEL [dm3] 2L_17713251_DEL [dm6]	AA	A	3.710e^-4	0.805	INTRON CadN
2R	10007632	2R_10007632_SNP [dm3] 2R_14120127_SNP [dm6]	T	A	3.712e^-4	0.805	INTRON Prosap	TF binding site mE1_TFBS_HSA
3L	11520518	3L_11520518_SNP [dm3] 3L_11527418_SNP [dm6]	G	A	3.718e^-4	0.805	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	1033631	2L_1033631_SNP [dm3] 2L_1033631_SNP [dm6]	G	C	3.719e^-4	0.805	INTRON IA-2
X	14132661	X_14132661_SNP [dm3] X_14238628_SNP [dm6]	C	T	3.726e^-4	0.805	UPSTREAM Fbxl4 INTRON CG1434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17152005	3L_17152005_INS [dm3] 3L_17158905_INS [dm6]	A	AGAATA	3.728e^-4	0.805	INTRON Rbp6
2L	1053773	2L_1053773_SNP [dm3] 2L_1053773_SNP [dm6]	G	A	3.739e^-4	0.805	INTRON S	TF binding site mE1_TFBS_cad
3L	15081199	3L_15081199_SNP [dm3] 3L_15088099_SNP [dm6]	A	T	3.746e^-4	0.805	INTRON cp309	TF binding site mE1_TFBS_Trl
3R	16782979	3R_16782979_SNP [dm3] 3R_20957257_SNP [dm6]	C	T	3.749e^-4	0.805	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4287479	3L_4287479_SNP [dm3] 3L_4287479_SNP [dm6]	C	T	3.753e^-4	0.805	SYNONYMOUS_CODING TfIIEbeta DOWNSTREAM CG1316	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21958772	X_21958772_SNP [dm3] X_22556936_SNP [dm6]	C	T	3.762e^-4	0.805	INTERGENIC	transposable element FlyBase
2R	17029213	2R_17029213_SNP [dm3] 2R_21141708_SNP [dm6]	T	C	3.765e^-4	0.805	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	16773530	3R_16773530_INS [dm3] 3R_20947808_INS [dm6]	A	AA	3.768e^-4	0.805	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	2474287	X_2474287_INS [dm3] X_2580254_INS [dm6]	A	ATAAAA	3.768e^-4	0.805	UTR_5_PRIME Vha36-3 UPSTREAM CG13759
2L	17924241	2L_17924241_SNP [dm3] 2L_17924241_SNP [dm6]	A	C	3.774e^-4	0.805	INTERGENIC
3R	20408506	3R_20408506_SNP [dm3] 3R_24582784_SNP [dm6]	A	G	3.774e^-4	0.805	UTR_5_PRIME CG13624 DOWNSTREAM CG13625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	9273372	2L_9273372_SNP [dm3] 2L_9273372_SNP [dm6]	T	G	3.774e^-4	0.805	INTRON Ggamma30A
3R	19188147	3R_19188147_SNP [dm3] 3R_23362425_SNP [dm6]	G	A	3.778e^-4	0.805	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7452607	2L_7452607_SNP [dm3] 2L_7452607_SNP [dm6]	T	C	3.780e^-4	0.805	SYNONYMOUS_CODING Gr28a	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	25162198	3R_25162198_SNP [dm3] 3R_29336476_SNP [dm6]	G	T	3.786e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12660332	2R_12660332_SNP [dm3] 2R_16772827_SNP [dm6]	T	C	3.793e^-4	0.805	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19334020	2L_19334020_SNP [dm3] 2L_19334020_SNP [dm6]	T	A	3.800e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	16949105	3R_16949105_SNP [dm3] 3R_21123383_SNP [dm6]	C	A	3.802e^-4	0.805	INTRON slmb
2L	2322018	2L_2322018_SNP [dm3] 2L_2322018_SNP [dm6]	T	C	3.804e^-4	0.805	INTRON CG9967 & 1 other
2R	17127473	2R_17127473_SNP [dm3] 2R_21239968_SNP [dm6]	G	T	3.806e^-4	0.805	INTRON ASPP
2R	8217742	2R_8217742_SNP [dm3] 2R_12330237_SNP [dm6]	C	T	3.807e^-4	0.805	SYNONYMOUS_CODING garz	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3632619	3L_3632619_SNP [dm3] 3L_3632619_SNP [dm6]	A	C	3.807e^-4	0.805	INTRON dar1	TF binding site BDTNP1_TFBS_dl
2L	18574565	2L_18574565_SNP [dm3] 2L_18574565_SNP [dm6]	C	T	3.811e^-4	0.805	INTRON Pde11
3R	6563404	3R_6563404_SNP [dm3] 3R_10737682_SNP [dm6]	G	A	3.815e^-4	0.805	UTR_3_PRIME TkR86C
2L	9666773	2L_9666773_SNP [dm3] 2L_9666773_SNP [dm6]	T	C	3.818e^-4	0.805	INTERGENIC
2R	3229127	2R_3229127_SNP [dm3] 2R_7341622_SNP [dm6]	A	T	3.821e^-4	0.805	SPLICE_SITE_REGION Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_HSA
3L	23214730	3L_23214730_DEL [dm3] 3L_23221630_DEL [dm6]	AGGTGC	A	3.825e^-4	0.805	INTRON nAChRalpha4	transposable element FlyBase
2L	1795887	2L_1795887_SNP [dm3] 2L_1795887_SNP [dm6]	C	T	3.828e^-4	0.805	UPSTREAM Gr22a INTERGENIC
3R	8957521	3R_8957521_SNP [dm3] 3R_13131799_SNP [dm6]	T	C	3.832e^-4	0.805	SYNONYMOUS_CODING 2mit DOWNSTREAM CR45109 INTRON timeout
3L	6602074	3L_6602074_SNP [dm3] 3L_6608974_SNP [dm6]	G	C	3.838e^-4	0.805	UPSTREAM CG8398 DOWNSTREAM CG8368 EXON CR45418
3L	9027559	3L_9027559_SNP [dm3] 3L_9034459_SNP [dm6]	T	C	3.844e^-4	0.805	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18586030	2L_18586030_DEL [dm3] 2L_18586030_DEL [dm6]	CC	C	3.846e^-4	0.805	INTRON Pde11
2R	17817288	2R_17817288_SNP [dm3] 2R_21929783_SNP [dm6]	A	G	3.856e^-4	0.805	SYNONYMOUS_CODING Fili
3L	14149920	3L_14149920_SNP [dm3] 3L_14156820_SNP [dm6]	A	T	3.860e^-4	0.805	INTERGENIC	regulatory region REDfly_CRMs
2L	4698109	2L_4698109_SNP [dm3] 2L_4698109_SNP [dm6]	T	A	3.860e^-4	0.805	INTRON CG34351
3R	17030959	3R_17030959_SNP [dm3] 3R_21205237_SNP [dm6]	C	T	3.866e^-4	0.805	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	9666640	2L_9666640_SNP [dm3] 2L_9666640_SNP [dm6]	T	G	3.871e^-4	0.805	INTERGENIC
2L	18618580	2L_18618580_SNP [dm3] 2L_18618580_SNP [dm6]	A	T	3.877e^-4	0.805	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	18592194	2L_18592194_SNP [dm3] 2L_18592194_SNP [dm6]	C	T	3.893e^-4	0.805	SYNONYMOUS_CODING CG15160	TF binding site mE1_TFBS_sens
3L	17171708	3L_17171708_SNP [dm3] 3L_17178608_SNP [dm6]	G	T	3.895e^-4	0.805	INTRON Rbp6
3R	6562075	3R_6562075_SNP [dm3] 3R_10736353_SNP [dm6]	C	A	3.895e^-4	0.805	UPSTREAM tomboy20 INTERGENIC
2L	18919607	2L_18919607_SNP [dm3] 2L_18919607_SNP [dm6]	A	T	3.898e^-4	0.805	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919608	2L_18919608_SNP [dm3] 2L_18919608_SNP [dm6]	C	G	3.898e^-4	0.805	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919610	2L_18919610_SNP [dm3] 2L_18919610_SNP [dm6]	G	A	3.898e^-4	0.805	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19883730	2R_19883730_SNP [dm3] 2R_23996207_SNP [dm6]	G	A	3.914e^-4	0.805	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10982275	3L_10982275_SNP [dm3] 3L_10989175_SNP [dm6]	C	T	3.927e^-4	0.805	INTRON klu
3R	27447718	3R_27447718_SNP [dm3] 3R_31621996_SNP [dm6]	A	T	3.929e^-4	0.805	UTR_3_PRIME pasha UPSTREAM kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20001530	2L_20001530_DEL [dm3] 2L_20001530_DEL [dm6]	ATAGACAA	A	3.933e^-4	0.805	INTRON CG43861
X	21960887	X_21960887_INS [dm3] X_22559051_INS [dm6]	C	CGAAAATCACTTTGCATCTG...	3.934e^-4	0.805	INTERGENIC	transposable element FlyBase
2L	18075072	2L_18075072_SNP [dm3] 2L_18075072_SNP [dm6]	A	G	3.941e^-4	0.805	INTERGENIC
2R	8542154	2R_8542154_SNP [dm3] 2R_12654649_SNP [dm6]	A	T	3.947e^-4	0.805	SYNONYMOUS_CODING ZnT49B
2R	12335354	2R_12335354_SNP [dm3] 2R_16447849_SNP [dm6]	A	T	3.952e^-4	0.805	DOWNSTREAM CG15925 INTERGENIC
3L	11522576	3L_11522576_SNP [dm3] 3L_11529476_SNP [dm6]	T	G	3.952e^-4	0.805	INTRON Mob2
2R	13294087	2R_13294087_SNP [dm3] 2R_17406582_SNP [dm6]	C	T	3.958e^-4	0.805	NON_SYNONYMOUS_CODING CG6568	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16773287	3R_16773287_SNP [dm3] 3R_20947565_SNP [dm6]	T	G	3.962e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	16773159	3R_16773159_SNP [dm3] 3R_20947437_SNP [dm6]	T	G	3.968e^-4	0.805	INTERGENIC
3L	1431633	3L_1431633_DEL [dm3] 3L_1431633_DEL [dm6]	GG	G	3.968e^-4	0.805	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17981409	3L_17981409_SNP [dm3] 3L_17988309_SNP [dm6]	T	G	3.970e^-4	0.805	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13049721	3L_13049721_SNP [dm3] 3L_13056621_SNP [dm6]	T	A	3.971e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23951874	3L_23951874_SNP [dm3] 3L_23958774_SNP [dm6]	A	T	3.974e^-4	0.805	INTRON CG40470
2L	10619939	2L_10619939_SNP [dm3] 2L_10619939_SNP [dm6]	C	T	3.976e^-4	0.805	SYNONYMOUS_CODING Trim9
3L	7359864	3L_7359864_SNP [dm3] 3L_7366764_SNP [dm6]	T	C	3.976e^-4	0.805	DOWNSTREAM Sh3beta INTRON Sh3beta
3L	18386696	3L_18386696_SNP [dm3] 3L_18393596_SNP [dm6]	T	C	3.981e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_cad
X	8623857	X_8623857_INS [dm3] X_8729824_INS [dm6]	A	AA	3.984e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10691742	3R_10691742_SNP [dm3] 3R_14866020_SNP [dm6]	T	G	4.001e^-4	0.805	INTRON btsz
2L	3355667	2L_3355667_DEL [dm3] 2L_3355667_DEL [dm6]	TTCT	T	4.001e^-4	0.805	UPSTREAM E23 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	20623939	3R_20623939_SNP [dm3] 3R_24798217_SNP [dm6]	T	G	4.010e^-4	0.805	NON_SYNONYMOUS_CODING Ude DOWNSTREAM Ets96B
X	14090128	X_14090128_SNP [dm3] X_14196095_SNP [dm6]	A	G	4.014e^-4	0.805	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18535559	2L_18535559_SNP [dm3] 2L_18535559_SNP [dm6]	A	C	4.015e^-4	0.805	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
2L	9273360	2L_9273360_SNP [dm3] 2L_9273360_SNP [dm6]	T	A	4.015e^-4	0.805	INTRON Ggamma30A
3L	15694396	3L_15694396_SNP [dm3] 3L_15701296_SNP [dm6]	G	A	4.019e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens mE1_TFBS_Trl
X	524380	X_524380_SNP [dm3] X_630347_SNP [dm6]	C	T	4.022e^-4	0.805	SYNONYMOUS_CODING l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2000901	2L_2000901_SNP [dm3] 2L_2000901_SNP [dm6]	C	G	4.023e^-4	0.805	INTRON CG33543 EXON CR43464
3L	7779969	3L_7779969_SNP [dm3] 3L_7786869_SNP [dm6]	T	G	4.026e^-4	0.805	INTRON CG32369
3L	4157884	3L_4157884_SNP [dm3] 3L_4157884_SNP [dm6]	G	T	4.034e^-4	0.805	INTRON nab
3R	21786511	3R_21786511_SNP [dm3] 3R_25960789_SNP [dm6]	G	C	4.035e^-4	0.805	NON_SYNONYMOUS_CODING CG14540
3L	13005259	3L_13005259_SNP [dm3] 3L_13012159_SNP [dm6]	T	A	4.035e^-4	0.805	SYNONYMOUS_CODING MICAL-like UPSTREAM CG11261
2L	12141596	2L_12141596_SNP [dm3] 2L_12141596_SNP [dm6]	C	T	4.038e^-4	0.805	INTERGENIC
3R	9095285	3R_9095285_SNP [dm3] 3R_13269563_SNP [dm6]	G	T	4.040e^-4	0.805	NON_SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3R	21670983	3R_21670983_SNP [dm3] 3R_25845261_SNP [dm6]	C	A	4.050e^-4	0.805	UPSTREAM CR45654 DOWNSTREAM CR45653 INTERGENIC
2L	7699201	2L_7699201_SNP [dm3] 2L_7699201_SNP [dm6]	G	A	4.053e^-4	0.805	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	11959781	3R_11959781_INS [dm3] 3R_16134059_INS [dm6]	G	GA	4.064e^-4	0.805	INTRON Sb
3L	1528528	3L_1528528_SNP [dm3] 3L_1528528_SNP [dm6]	A	T	4.068e^-4	0.805	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
X	3427800	X_3427800_SNP [dm3] X_3533767_SNP [dm6]	T	C	4.076e^-4	0.805	INTRON CG32791	TF binding site mE1_TFBS_inv
3L	13634136	3L_13634136_SNP [dm3] 3L_13641036_SNP [dm6]	G	A	4.077e^-4	0.805	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	1050942	2L_1050942_SNP [dm3] 2L_1050942_SNP [dm6]	A	T	4.079e^-4	0.805	UTR_3_PRIME S DOWNSTREAM S
3R	6271865	3R_6271865_SNP [dm3] 3R_10446143_SNP [dm6]	G	A	4.083e^-4	0.805	INTERGENIC
2R	1238300	2R_1238300_SNP [dm3] 2R_5350795_SNP [dm6]	G	A	4.087e^-4	0.805	NON_SYNONYMOUS_CODING CG10395 DOWNSTREAM CG30441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17030980	2R_17030980_SNP [dm3] 2R_21143475_SNP [dm6]	C	T	4.100e^-4	0.805	UPSTREAM Xbp1 DOWNSTREAM CG9406 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18931143	2R_18931143_SNP [dm3] 2R_23043620_SNP [dm6]	A	G	4.100e^-4	0.805	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	19135804	2R_19135804_SNP [dm3] 2R_23248281_SNP [dm6]	C	G	4.101e^-4	0.805	UPSTREAM RpL22-like INTERGENIC
2L	1694765	2L_1694765_SNP [dm3] 2L_1694765_SNP [dm6]	G	A	4.103e^-4	0.805	SYNONYMOUS_CODING chinmo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17031038	2R_17031038_SNP [dm3] 2R_21143533_SNP [dm6]	C	T	4.103e^-4	0.805	UPSTREAM Xbp1 DOWNSTREAM CG9406 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
X	21977045	X_21977045_SNP [dm3] X_22575209_SNP [dm6]	C	T	4.117e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	14992231	3L_14992231_SNP [dm3] 3L_14999131_SNP [dm6]	G	A	4.120e^-4	0.806	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16199072	X_16199072_DEL [dm3] X_16305039_DEL [dm6]	TGATATAAACAATCTA...	T	4.123e^-4	0.806	INTRON CG3679
3L	14109236	3L_14109236_SNP [dm3] 3L_14116136_SNP [dm6]	C	T	4.127e^-4	0.806	INTRON Sox21b
X	557856	X_557856_DEL [dm3] X_663823_DEL [dm6]	AA	A	4.127e^-4	0.806	INTERGENIC
3R	18865862	3R_18865862_SNP [dm3] 3R_23040140_SNP [dm6]	A	C	4.134e^-4	0.806	UPSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11515851	3R_11515851_SNP [dm3] 3R_15690129_SNP [dm6]	G	C	4.136e^-4	0.806	UTR_3_PRIME pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12133244	3R_12133244_SNP [dm3] 3R_16307522_SNP [dm6]	T	G	4.157e^-4	0.806	INTRON Zip89B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24088680	3R_24088680_SNP [dm3] 3R_28262958_SNP [dm6]	C	T	4.160e^-4	0.806	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	6638776	3R_6638776_SNP [dm3] 3R_10813054_SNP [dm6]	G	T	4.162e^-4	0.806	SPLICE_SITE_REGION CG14693 DOWNSTREAM CG14693 INTRON CG14693	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	10552813	3R_10552813_SNP [dm3] 3R_14727091_SNP [dm6]	T	G	4.171e^-4	0.806	INTRON CG7530
3R	3975489	3R_3975489_SNP [dm3] 3R_8149767_SNP [dm6]	T	C	4.172e^-4	0.806	INTRON grn	TF binding site BDTNP1_TFBS_dl
2L	18310716	2L_18310716_SNP [dm3] 2L_18310716_SNP [dm6]	C	T	4.179e^-4	0.806	UPSTREAM CR45721 DOWNSTREAM CR44694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16841946	2L_16841946_DEL [dm3] 2L_16841946_DEL [dm6]	AA	A	4.180e^-4	0.806	DOWNSTREAM CG13284 & 2 others INTERGENIC
3L	9353458	3L_9353458_SNP [dm3] 3L_9360358_SNP [dm6]	C	G	4.180e^-4	0.806	START_GAINED CG34455 UTR_5_PRIME CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14557404	X_14557404_SNP [dm3] X_14663371_SNP [dm6]	T	A	4.191e^-4	0.806	INTERGENIC
3R	16776316	3R_16776316_SNP [dm3] 3R_20950594_SNP [dm6]	C	A	4.198e^-4	0.806	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl
2L	18316277	2L_18316277_SNP [dm3] 2L_18316277_SNP [dm6]	A	T	4.203e^-4	0.806	INTERGENIC
3R	15855468	3R_15855468_SNP [dm3] 3R_20029746_SNP [dm6]	T	C	4.208e^-4	0.806	NON_SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7197340	2L_7197340_SNP [dm3] 2L_7197340_SNP [dm6]	C	T	4.216e^-4	0.806	INTRON CG4502
2L	1082497	2L_1082497_SNP [dm3] 2L_1082497_SNP [dm6]	T	A	4.221e^-4	0.806	NON_SYNONYMOUS_CODING Atg4a DOWNSTREAM CG4629	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3261976	2R_3261976_SNP [dm3] 2R_7374471_SNP [dm6]	C	T	4.222e^-4	0.806	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	13366999	3R_13366999_SNP [dm3] 3R_17541277_SNP [dm6]	A	G	4.223e^-4	0.806	NON_SYNONYMOUS_CODING SF1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7258308	3L_7258308_SNP [dm3] 3L_7265208_SNP [dm6]	T	A	4.241e^-4	0.806	DOWNSTREAM unc-13-4A INTERGENIC
2L	1455759	2L_1455759_SNP [dm3] 2L_1455759_SNP [dm6]	A	G	4.245e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11997249	3R_11997249_SNP [dm3] 3R_16171527_SNP [dm6]	C	A	4.245e^-4	0.806	UTR_3_PRIME CG6006 UPSTREAM CG8925 DOWNSTREAM CG6006
3R	13513109	3R_13513109_SNP [dm3] 3R_17687387_SNP [dm6]	G	A	4.246e^-4	0.806	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	14992261	3L_14992261_SNP [dm3] 3L_14999161_SNP [dm6]	G	A	4.248e^-4	0.806	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9905029	3L_9905029_SNP [dm3] 3L_9911929_SNP [dm6]	T	A	4.253e^-4	0.806	INTRON CG34356
3L	18748634	3L_18748634_SNP [dm3] 3L_18755534_SNP [dm6]	A	G	4.258e^-4	0.806	INTRON ftz-f1
3L	4635572	3L_4635572_SNP [dm3] 3L_4635572_SNP [dm6]	C	A	4.259e^-4	0.806	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9529578	3R_9529578_SNP [dm3] 3R_13703856_SNP [dm6]	A	T	4.265e^-4	0.806	DOWNSTREAM ninaB INTRON Adgf-D
2R	3257148	2R_3257148_SNP [dm3] 2R_7369643_SNP [dm6]	A	G	4.267e^-4	0.806	INTRON Dscam1	TF binding site mE1_TFBS_inv
3L	19265957	3L_19265957_SNP [dm3] 3L_19272857_SNP [dm6]	A	C	4.272e^-4	0.806	SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad
2L	16408045	2L_16408045_SNP [dm3] 2L_16408045_SNP [dm6]	G	A	4.281e^-4	0.806	INTRON CG5888
2L	1079207	2L_1079207_SNP [dm3] 2L_1079207_SNP [dm6]	T	G	4.286e^-4	0.806	NON_SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
3R	6562448	3R_6562448_SNP [dm3] 3R_10736726_SNP [dm6]	T	G	4.287e^-4	0.806	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
2L	18919602	2L_18919602_DEL [dm3] 2L_18919602_DEL [dm6]	TT	T	4.287e^-4	0.806	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18398296	2R_18398296_SNP [dm3] 2R_22510791_SNP [dm6]	A	G	4.298e^-4	0.806	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	19218498	3L_19218498_SNP [dm3] 3L_19225398_SNP [dm6]	T	C	4.300e^-4	0.806	INTRON fz2
X	16918901	X_16918901_SNP [dm3] X_17024868_SNP [dm6]	G	C	4.313e^-4	0.806	DOWNSTREAM CG43997 INTRON CG45002
3L	19454386	3L_19454386_SNP [dm3] 3L_19461286_SNP [dm6]	C	A	4.316e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17593956	2R_17593956_SNP [dm3] 2R_21706451_SNP [dm6]	G	A	4.326e^-4	0.806	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13966546	2L_13966546_SNP [dm3] 2L_13966546_SNP [dm6]	T	G	4.331e^-4	0.806	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB3	TF binding site mE1_TFBS_chinmo
3R	16825655	3R_16825655_SNP [dm3] 3R_20999933_SNP [dm6]	G	T	4.331e^-4	0.806	INTRON Calx

By genomic position
Variant impact
Gene name

mn_Glucose_HighDiet phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results