DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.566e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09639

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2046 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6455818	3R_6455818_SNP [dm3] 3R_10630096_SNP [dm6]	G	C	1.043e^-7	0.195	INTRON hth	TF binding site mE1_TFBS_cad
3R	6404817	3R_6404817_SNP [dm3] 3R_10579095_SNP [dm6]	A	C	1.043e^-6	0.781	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	6983761	3R_6983761_SNP [dm3] 3R_11158039_SNP [dm6]	A	T	2.159e^-6	0.781	INTRON Ugt86Da
3L	10697113	3L_10697113_SNP [dm3] 3L_10704013_SNP [dm6]	A	C	2.573e^-6	0.781	INTERGENIC
2L	12298152	2L_12298152_SNP [dm3] 2L_12298152_SNP [dm6]	C	T	2.683e^-6	0.781	INTRON aret	TF binding site mE1_TFBS_inv
2L	15990382	2L_15990382_SNP [dm3] 2L_15990382_SNP [dm6]	A	T	3.641e^-6	0.781	DOWNSTREAM CR43412 INTERGENIC
2L	15990388	2L_15990388_SNP [dm3] 2L_15990388_SNP [dm6]	A	G	4.357e^-6	0.781	DOWNSTREAM CR43412 INTERGENIC
3R	6446314	3R_6446314_SNP [dm3] 3R_10620592_SNP [dm6]	T	C	4.757e^-6	0.781	INTRON hth	TF binding site mE1_TFBS_cad
3L	9632157	3L_9632157_SNP [dm3] 3L_9639057_SNP [dm6]	G	T	5.076e^-6	0.781	UPSTREAM CG18179 DOWNSTREAM CG8329 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8378399	3L_8378399_SNP [dm3] 3L_8385299_SNP [dm6]	A	C	6.201e^-6	0.781	INTRON ImpE1
3L	15081132	3L_15081132_INS [dm3] 3L_15088032_INS [dm6]	T	TTATTTGATTT...	6.444e^-6	0.781	INTRON cp309
2L	17713037	2L_17713037_SNP [dm3] 2L_17713037_SNP [dm6]	G	C	7.048e^-6	0.781	INTRON CadN
3R	16897008	3R_16897008_SNP [dm3] 3R_21071286_SNP [dm6]	T	G	7.648e^-6	0.781	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6980491	3R_6980491_SNP [dm3] 3R_11154769_SNP [dm6]	T	G	7.693e^-6	0.781	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Di
2L	16473653	2L_16473653_SNP [dm3] 2L_16473653_SNP [dm6]	T	A	8.312e^-6	0.781	INTRON dac
3R	6960557	3R_6960557_SNP [dm3] 3R_11134835_SNP [dm6]	T	A	8.454e^-6	0.781	INTERGENIC
3R	6960554	3R_6960554_SNP [dm3] 3R_11134832_SNP [dm6]	C	T	9.930e^-6	0.781	INTERGENIC
2L	6976313	2L_6976313_SNP [dm3] 2L_6976313_SNP [dm6]	T	A	1.065e^-5	0.781	INTRON uif	TF binding site mE1_TFBS_cad
2L	7096505	2L_7096505_SNP [dm3] 2L_7096505_SNP [dm6]	T	C	1.089e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6640350	3R_6640350_SNP [dm3] 3R_10814628_SNP [dm6]	C	A	1.111e^-5	0.781	NON_SYNONYMOUS_CODING CG14693 UPSTREAM CG14693 & 1 other
3R	16773530	3R_16773530_INS [dm3] 3R_20947808_INS [dm6]	A	AA	1.253e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3L	5467789	3L_5467789_SNP [dm3] 3L_5474689_SNP [dm6]	A	C	1.286e^-5	0.781	INTERGENIC
3L	6481133	3L_6481133_SNP [dm3] 3L_6488033_SNP [dm6]	T	C	1.416e^-5	0.781	SYNONYMOUS_CODING CG10147 UPSTREAM CG8270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	11477692	2L_11477692_SNP [dm3] 2L_11477692_SNP [dm6]	G	A	1.420e^-5	0.781	INTERGENIC
3R	16897347	3R_16897347_SNP [dm3] 3R_21071625_SNP [dm6]	T	A	1.512e^-5	0.781	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16773550	3R_16773550_SNP [dm3] 3R_20947828_SNP [dm6]	G	C	1.512e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	9154859	3R_9154859_SNP [dm3] 3R_13329137_SNP [dm6]	T	C	1.582e^-5	0.781	UTR_3_PRIME PK2-R2
3L	15690074	3L_15690074_SNP [dm3] 3L_15696974_SNP [dm6]	A	T	1.592e^-5	0.781	DOWNSTREAM comm2 INTERGENIC
X	7998203	X_7998203_SNP [dm3] X_8104170_SNP [dm6]	C	T	1.686e^-5	0.781	NON_SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
3L	10697056	3L_10697056_SNP [dm3] 3L_10703956_SNP [dm6]	A	T	1.696e^-5	0.781	INTERGENIC
3R	16963192	3R_16963192_SNP [dm3] 3R_21137470_SNP [dm6]	G	T	1.753e^-5	0.781	SPLICE_SITE_REGION Ubpy UPSTREAM meigo INTRON Ubpy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12516171	3R_12516171_SNP [dm3] 3R_16690449_SNP [dm6]	G	T	1.811e^-5	0.781	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2552127	3L_2552127_SNP [dm3] 3L_2552127_SNP [dm6]	A	C	1.812e^-5	0.781	INTRON Spn
3R	3879169	3R_3879169_SNP [dm3] 3R_8053447_SNP [dm6]	T	A	1.835e^-5	0.781	INTRON CG43060
3R	16962199	3R_16962199_SNP [dm3] 3R_21136477_SNP [dm6]	C	T	1.884e^-5	0.781	UPSTREAM Ubpy INTRON Ubpy
2L	17769017	2L_17769017_SNP [dm3] 2L_17769017_SNP [dm6]	A	C	1.909e^-5	0.781	INTRON CadN
3L	4811585	3L_4811585_SNP [dm3] 3L_4811585_SNP [dm6]	C	A	1.917e^-5	0.781	SYNONYMOUS_CODING Dhc64C
2R	17129016	2R_17129016_SNP [dm3] 2R_21241511_SNP [dm6]	A	G	1.955e^-5	0.781	INTRON ASPP
3R	23292838	3R_23292838_SNP [dm3] 3R_27467116_SNP [dm6]	G	A	1.966e^-5	0.781	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23292839	3R_23292839_SNP [dm3] 3R_27467117_SNP [dm6]	T	C	1.966e^-5	0.781	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17762237	2L_17762237_SNP [dm3] 2L_17762237_SNP [dm6]	G	A	2.035e^-5	0.781	INTRON CadN
3L	17999051	3L_17999051_DEL [dm3] 3L_18005951_DEL [dm6]	GG	G	2.059e^-5	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	6933945	3R_6933945_SNP [dm3] 3R_11108223_SNP [dm6]	C	T	2.209e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17089115	2R_17089115_SNP [dm3] 2R_21201610_SNP [dm6]	G	A	2.216e^-5	0.781	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17089116	2R_17089116_SNP [dm3] 2R_21201611_SNP [dm6]	T	A	2.216e^-5	0.781	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6958412	3R_6958412_SNP [dm3] 3R_11132690_SNP [dm6]	T	G	2.273e^-5	0.781	INTERGENIC
3R	23291066	3R_23291066_SNP [dm3] 3R_27465344_SNP [dm6]	C	T	2.308e^-5	0.781	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6641328	3R_6641328_SNP [dm3] 3R_10815606_SNP [dm6]	G	T	2.318e^-5	0.781	SYNONYMOUS_CODING CG4089 UPSTREAM CG14693	TF binding site mE1_TFBS_sens
3R	19061110	3R_19061110_SNP [dm3] 3R_23235388_SNP [dm6]	T	A	2.410e^-5	0.781	INTRON CG4467
3R	6965208	3R_6965208_SNP [dm3] 3R_11139486_SNP [dm6]	C	T	2.464e^-5	0.781	SYNONYMOUS_CODING CG4706
2L	12141596	2L_12141596_SNP [dm3] 2L_12141596_SNP [dm6]	C	T	2.625e^-5	0.781	INTERGENIC
2L	18384190	2L_18384190_SNP [dm3] 2L_18384190_SNP [dm6]	C	T	2.682e^-5	0.781	INTRON Fas3	TF binding site mE1_TFBS_cad
3R	8360687	3R_8360687_SNP [dm3] 3R_12534965_SNP [dm6]	G	A	2.695e^-5	0.781	INTRON Octbeta3R
2L	14576260	2L_14576260_SNP [dm3] 2L_14576260_SNP [dm6]	G	A	2.740e^-5	0.781	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13573725	3L_13573725_SNP [dm3] 3L_13580625_SNP [dm6]	A	C	2.774e^-5	0.781	INTRON bru-3
2L	9983637	2L_9983637_SNP [dm3] 2L_9983637_SNP [dm6]	A	G	2.784e^-5	0.781	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	18138776	2R_18138776_SNP [dm3] 2R_22251271_SNP [dm6]	G	A	2.861e^-5	0.781	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23944819	3L_23944819_SNP [dm3] 3L_23951719_SNP [dm6]	A	C	2.940e^-5	0.781	INTRON CG40470
2L	8052493	2L_8052493_SNP [dm3] 2L_8052493_SNP [dm6]	T	C	2.951e^-5	0.781	SYNONYMOUS_CODING CG7466
2L	7096494	2L_7096494_SNP [dm3] 2L_7096494_SNP [dm6]	T	G	3.056e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16991456	3R_16991456_SNP [dm3] 3R_21165734_SNP [dm6]	C	G	3.166e^-5	0.781	NON_SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
3L	18225915	3L_18225915_SNP [dm3] 3L_18232815_SNP [dm6]	T	A	3.243e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6440408	3R_6440408_SNP [dm3] 3R_10614686_SNP [dm6]	C	G	3.259e^-5	0.781	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17715708	X_17715708_DEL [dm3] X_17821675_DEL [dm6]	TGTTACT	T	3.262e^-5	0.781	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	3161114	3R_3161114_SNP [dm3] 3R_7335392_SNP [dm6]	T	G	3.284e^-5	0.781	INTERGENIC
3R	21877137	3R_21877137_SNP [dm3] 3R_26051415_SNP [dm6]	A	G	3.316e^-5	0.781	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	9341795	3R_9341795_SNP [dm3] 3R_13516073_SNP [dm6]	A	T	3.319e^-5	0.781	INTERGENIC
3L	8842727	3L_8842727_SNP [dm3] 3L_8849627_SNP [dm6]	C	T	3.328e^-5	0.781	INTRON dally
2L	17749366	2L_17749366_SNP [dm3] 2L_17749366_SNP [dm6]	A	T	3.398e^-5	0.781	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6934656	X_6934656_SNP [dm3] X_7040623_SNP [dm6]	G	A	3.492e^-5	0.781	UTR_5_PRIME CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	17715695	X_17715695_SNP [dm3] X_17821662_SNP [dm6]	C	T	3.495e^-5	0.781	UTR_3_PRIME Socs16D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	13626419	3L_13626419_SNP [dm3] 3L_13633319_SNP [dm6]	A	G	3.540e^-5	0.781	INTRON bru-3
3R	6446399	3R_6446399_SNP [dm3] 3R_10620677_SNP [dm6]	T	G	3.541e^-5	0.781	INTRON hth	TF binding site mE1_TFBS_cad
2L	13949532	2L_13949532_SNP [dm3] 2L_13949532_SNP [dm6]	A	T	3.724e^-5	0.781	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4439243	2R_4439243_SNP [dm3] 2R_8551738_SNP [dm6]	G	T	3.736e^-5	0.781	DOWNSTREAM CG12780 INTERGENIC
3R	23293808	3R_23293808_SNP [dm3] 3R_27468086_SNP [dm6]	T	A	3.810e^-5	0.781	INTERGENIC
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	3.839e^-5	0.781	INTRON ds
X	9845166	X_9845166_SNP [dm3] X_9951133_SNP [dm6]	C	A	3.845e^-5	0.781	INTERGENIC
3L	14705041	3L_14705041_SNP [dm3] 3L_14711941_SNP [dm6]	G	A	3.868e^-5	0.781	INTRON ome
2L	13876135	2L_13876135_SNP [dm3] 2L_13876135_SNP [dm6]	C	T	3.873e^-5	0.781	INTRON CenG1A
2R	17547111	2R_17547111_SNP [dm3] 2R_21659606_SNP [dm6]	G	A	3.929e^-5	0.781	SYNONYMOUS_CODING Rae1 DOWNSTREAM CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_ttk
2L	17768131	2L_17768131_SNP [dm3] 2L_17768131_SNP [dm6]	C	T	3.956e^-5	0.781	INTRON CadN
2L	17769316	2L_17769316_SNP [dm3] 2L_17769316_SNP [dm6]	C	G	4.027e^-5	0.781	INTRON CadN
3R	16773596	3R_16773596_SNP [dm3] 3R_20947874_SNP [dm6]	T	C	4.160e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	6405090	3R_6405090_SNP [dm3] 3R_10579368_SNP [dm6]	C	T	4.198e^-5	0.781	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	17713251	2L_17713251_DEL [dm3] 2L_17713251_DEL [dm6]	AA	A	4.230e^-5	0.781	INTRON CadN
3R	21877167	3R_21877167_SNP [dm3] 3R_26051445_SNP [dm6]	A	G	4.304e^-5	0.781	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	16962381	3R_16962381_SNP [dm3] 3R_21136659_SNP [dm6]	G	C	4.415e^-5	0.781	INTRON Ubpy
3R	24089095	3R_24089095_SNP [dm3] 3R_28263373_SNP [dm6]	G	A	4.568e^-5	0.781	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3L	4293492	3L_4293492_SNP [dm3] 3L_4293492_SNP [dm6]	A	C	4.649e^-5	0.781	DOWNSTREAM dyl & 1 other INTERGENIC
2L	17864039	2L_17864039_SNP [dm3] 2L_17864039_SNP [dm6]	T	G	4.691e^-5	0.781	UTR_5_PRIME CadN2
3L	3448456	3L_3448456_SNP [dm3] 3L_3448456_SNP [dm6]	C	T	4.724e^-5	0.781	INTRON eIF5B
3R	6987046	3R_6987046_DEL [dm3] 3R_11161324_DEL [dm6]	AGCCAA	A	4.754e^-5	0.781	FRAME_SHIFT CG4757
2L	11476375	2L_11476375_SNP [dm3] 2L_11476375_SNP [dm6]	T	C	4.765e^-5	0.781	INTERGENIC
2L	17867172	2L_17867172_SNP [dm3] 2L_17867172_SNP [dm6]	C	A	4.823e^-5	0.781	INTRON CadN2
3R	6966512	3R_6966512_SNP [dm3] 3R_11140790_SNP [dm6]	A	C	4.957e^-5	0.781	INTERGENIC
2L	13326891	2L_13326891_SNP [dm3] 2L_13326891_SNP [dm6]	A	T	4.996e^-5	0.781	INTRON CG43778
2L	17857516	2L_17857516_SNP [dm3] 2L_17857516_SNP [dm6]	A	G	4.997e^-5	0.781	INTRON CadN2
2L	11473837	2L_11473837_DEL [dm3] 2L_11473837_DEL [dm6]	TCT	T	5.026e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3R	6494423	3R_6494423_SNP [dm3] 3R_10668701_SNP [dm6]	C	T	5.030e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17833026	2L_17833026_SNP [dm3] 2L_17833026_SNP [dm6]	C	T	5.047e^-5	0.781	INTRON CadN2
3R	6981224	3R_6981224_SNP [dm3] 3R_11155502_SNP [dm6]	C	T	5.129e^-5	0.781	SYNONYMOUS_CODING Ugt86Dc
X	12001541	X_12001541_SNP [dm3] X_12107508_SNP [dm6]	A	T	5.134e^-5	0.781	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3R	16772972	3R_16772972_SNP [dm3] 3R_20947250_SNP [dm6]	C	G	5.136e^-5	0.781	INTERGENIC
3L	2767411	3L_2767411_SNP [dm3] 3L_2767411_SNP [dm6]	G	A	5.151e^-5	0.781	SYNONYMOUS_CODING CG1240 UPSTREAM Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9983616	2L_9983616_SNP [dm3] 2L_9983616_SNP [dm6]	A	G	5.156e^-5	0.781	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	7122348	3R_7122348_SNP [dm3] 3R_11296626_SNP [dm6]	C	T	5.230e^-5	0.781	INTRON CR31386	TF binding site mE1_TFBS_chinmo
3R	16773335	3R_16773335_SNP [dm3] 3R_20947613_SNP [dm6]	A	G	5.244e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	3879168	3R_3879168_SNP [dm3] 3R_8053446_SNP [dm6]	G	A	5.320e^-5	0.781	INTRON CG43060
3L	12626933	3L_12626933_SNP [dm3] 3L_12633833_SNP [dm6]	T	C	5.358e^-5	0.781	INTRON CR32111 EXON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9737479	3L_9737479_SNP [dm3] 3L_9744379_SNP [dm6]	A	T	5.369e^-5	0.781	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3R	23221970	3R_23221970_SNP [dm3] 3R_27396248_SNP [dm6]	C	G	5.439e^-5	0.781	INTRON side
3R	9154848	3R_9154848_SNP [dm3] 3R_13329126_SNP [dm6]	G	A	5.455e^-5	0.781	UTR_3_PRIME PK2-R2
2L	9666640	2L_9666640_SNP [dm3] 2L_9666640_SNP [dm6]	T	G	5.520e^-5	0.781	INTERGENIC
X	13237525	X_13237525_SNP [dm3] X_13343492_SNP [dm6]	C	T	5.538e^-5	0.781	INTERGENIC
3L	18068131	3L_18068131_DEL [dm3] 3L_18075031_DEL [dm6]	ATT	A	5.557e^-5	0.781	EXON CR45391
2L	17686624	2L_17686624_SNP [dm3] 2L_17686624_SNP [dm6]	G	T	5.605e^-5	0.781	INTRON CadN
3R	9967112	3R_9967112_SNP [dm3] 3R_14141390_SNP [dm6]	G	T	5.684e^-5	0.781	INTERGENIC
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	5.753e^-5	0.781	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	11478125	2L_11478125_SNP [dm3] 2L_11478125_SNP [dm6]	T	G	5.757e^-5	0.781	INTERGENIC
2R	9127115	2R_9127115_SNP [dm3] 2R_13239610_SNP [dm6]	A	C	5.790e^-5	0.781	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	685855	2L_685855_SNP [dm3] 2L_685855_SNP [dm6]	G	C	5.801e^-5	0.781	INTRON ds
3L	13079479	3L_13079479_SNP [dm3] 3L_13086379_SNP [dm6]	C	T	5.899e^-5	0.781	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16773287	3R_16773287_SNP [dm3] 3R_20947565_SNP [dm6]	T	G	5.938e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	11477918	2L_11477918_SNP [dm3] 2L_11477918_SNP [dm6]	C	A	6.007e^-5	0.781	INTERGENIC
3R	6423078	3R_6423078_SNP [dm3] 3R_10597356_SNP [dm6]	G	A	6.030e^-5	0.781	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17757416	2L_17757416_SNP [dm3] 2L_17757416_SNP [dm6]	G	A	6.054e^-5	0.781	INTRON CadN	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18384200	2L_18384200_SNP [dm3] 2L_18384200_SNP [dm6]	T	G	6.088e^-5	0.781	INTRON Fas3	TF binding site mE1_TFBS_cad
3R	25187612	3R_25187612_SNP [dm3] 3R_29361890_SNP [dm6]	A	T	6.095e^-5	0.781	INTERGENIC
3L	13560913	3L_13560913_INS [dm3] 3L_13567813_INS [dm6]	C	CC	6.106e^-5	0.781	INTRON bru-3
2R	12018957	2R_12018957_SNP [dm3] 2R_16131452_SNP [dm6]	T	A	6.161e^-5	0.781	INTRON spin	TF binding site mE1_TFBS_cad
2L	17877565	2L_17877565_SNP [dm3] 2L_17877565_SNP [dm6]	A	T	6.231e^-5	0.781	INTERGENIC
3R	16773159	3R_16773159_SNP [dm3] 3R_20947437_SNP [dm6]	T	G	6.246e^-5	0.781	INTERGENIC
3R	6638776	3R_6638776_SNP [dm3] 3R_10813054_SNP [dm6]	G	T	6.246e^-5	0.781	SPLICE_SITE_REGION CG14693 DOWNSTREAM CG14693 INTRON CG14693	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	3023395	3R_3023395_SNP [dm3] 3R_7197673_SNP [dm6]	A	G	6.318e^-5	0.781	INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	6.382e^-5	0.781	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	21877161	3R_21877161_SNP [dm3] 3R_26051439_SNP [dm6]	A	G	6.419e^-5	0.781	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3L	11645719	3L_11645719_SNP [dm3] 3L_11652619_SNP [dm6]	T	C	6.518e^-5	0.781	INTRON CG32085
2L	17898590	2L_17898590_SNP [dm3] 2L_17898590_SNP [dm6]	C	T	6.549e^-5	0.781	INTERGENIC
2R	12018975	2R_12018975_SNP [dm3] 2R_16131470_SNP [dm6]	C	T	6.560e^-5	0.781	INTRON spin	TF binding site mE1_TFBS_cad
3R	10765498	3R_10765498_SNP [dm3] 3R_14939776_SNP [dm6]	T	C	6.683e^-5	0.781	INTERGENIC
3L	4293459	3L_4293459_SNP [dm3] 3L_4293459_SNP [dm6]	G	T	6.693e^-5	0.781	DOWNSTREAM dyl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16741721	3R_16741721_SNP [dm3] 3R_20915999_SNP [dm6]	G	T	6.749e^-5	0.781	INTRON CG31191 & 1 other
3R	6981240	3R_6981240_SNP [dm3] 3R_11155518_SNP [dm6]	T	A	6.857e^-5	0.781	NON_SYNONYMOUS_CODING Ugt86Dc
2R	8725170	2R_8725170_SNP [dm3] 2R_12837665_SNP [dm6]	T	C	6.864e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6467118	3R_6467118_DEL [dm3] 3R_10641396_DEL [dm6]	AGGGCAGTCATA...	A	7.011e^-5	0.781	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4293460	3L_4293460_SNP [dm3] 3L_4293460_SNP [dm6]	G	T	7.019e^-5	0.781	DOWNSTREAM dyl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10620601	2R_10620601_SNP [dm3] 2R_14733096_SNP [dm6]	A	C	7.029e^-5	0.781	INTERGENIC
3R	16773238	3R_16773238_SNP [dm3] 3R_20947516_SNP [dm6]	T	A	7.030e^-5	0.781	INTERGENIC
3R	16954567	3R_16954567_SNP [dm3] 3R_21128845_SNP [dm6]	T	C	7.053e^-5	0.781	SYNONYMOUS_CODING CG5793 DOWNSTREAM Obp93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6587216	3R_6587216_SNP [dm3] 3R_10761494_SNP [dm6]	G	A	7.071e^-5	0.781	START_GAINED Cap-H2 UTR_5_PRIME Cap-H2 UPSTREAM Cap-H2 & 1 other EXON CR45016	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6562380	3R_6562380_SNP [dm3] 3R_10736658_SNP [dm6]	T	C	7.101e^-5	0.781	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
3R	16773342	3R_16773342_SNP [dm3] 3R_20947620_SNP [dm6]	C	T	7.119e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9333278	2R_9333278_SNP [dm3] 2R_13445773_SNP [dm6]	T	A	7.179e^-5	0.781	UTR_3_PRIME CG30062 UPSTREAM cnn INTRON cnn
X	12174953	X_12174953_SNP [dm3] X_12280920_SNP [dm6]	C	G	7.230e^-5	0.781	INTRON Ten-a
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	7.245e^-5	0.781	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14082116	X_14082116_SNP [dm3] X_14188083_SNP [dm6]	A	T	7.253e^-5	0.781	DOWNSTREAM CG12481 INTERGENIC
3L	19218696	3L_19218696_SNP [dm3] 3L_19225596_SNP [dm6]	C	A	7.278e^-5	0.781	INTRON fz2	TF binding site mE1_TFBS_inv
2R	9127159	2R_9127159_SNP [dm3] 2R_13239654_SNP [dm6]	T	A	7.326e^-5	0.781	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2457598	3L_2457598_SNP [dm3] 3L_2457598_SNP [dm6]	A	G	7.352e^-5	0.781	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5835755	2R_5835755_SNP [dm3] 2R_9948250_SNP [dm6]	A	T	7.381e^-5	0.781	INTRON Mef2
3R	5707568	3R_5707568_SNP [dm3] 3R_9881846_SNP [dm6]	T	G	7.442e^-5	0.781	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18520504	2L_18520504_SNP [dm3] 2L_18520504_SNP [dm6]	C	T	7.458e^-5	0.781	INTRON CG10211
2R	15548480	2R_15548480_SNP [dm3] 2R_19660975_SNP [dm6]	A	G	7.484e^-5	0.781	UPSTREAM mir-6-3 & 1 other DOWNSTREAM mir-6-1 & 5 others EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1952887	2L_1952887_SNP [dm3] 2L_1952887_SNP [dm6]	A	G	7.507e^-5	0.781	INTRON erm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16921524	3R_16921524_SNP [dm3] 3R_21095802_SNP [dm6]	T	C	7.515e^-5	0.781	DOWNSTREAM CR44178 INTRON RhoGAP93B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	17864302	2L_17864302_DEL [dm3] 2L_17864302_DEL [dm6]	GCGCCTTCCC	G	7.519e^-5	0.781	UTR_5_PRIME CadN2
3R	16954245	3R_16954245_SNP [dm3] 3R_21128523_SNP [dm6]	C	T	7.525e^-5	0.781	DOWNSTREAM Obp93a INTRON CG5793	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22741022	3R_22741022_SNP [dm3] 3R_26915300_SNP [dm6]	T	C	7.538e^-5	0.781	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5467761	3L_5467761_SNP [dm3] 3L_5474661_SNP [dm6]	A	G	7.552e^-5	0.781	INTERGENIC
3L	10038229	3L_10038229_SNP [dm3] 3L_10045129_SNP [dm6]	C	T	7.575e^-5	0.781	INTRON dpr6
3L	9027559	3L_9027559_SNP [dm3] 3L_9034459_SNP [dm6]	T	C	7.594e^-5	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10545264	2L_10545264_SNP [dm3] 2L_10545264_SNP [dm6]	T	C	7.607e^-5	0.781	UTR_5_PRIME Trim9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14150145	3L_14150145_SNP [dm3] 3L_14157045_SNP [dm6]	G	T	7.659e^-5	0.781	INTERGENIC	regulatory region REDfly_CRMs
2R	17011554	2R_17011554_SNP [dm3] 2R_21124049_SNP [dm6]	G	A	7.695e^-5	0.781	UTR_3_PRIME CG4050 DOWNSTREAM ktub	TF binding site mE1_TFBS_cad
2L	15990308	2L_15990308_SNP [dm3] 2L_15990308_SNP [dm6]	C	T	7.705e^-5	0.781	DOWNSTREAM CR43412 INTERGENIC
3R	20887205	3R_20887205_SNP [dm3] 3R_25061483_SNP [dm6]	C	T	7.807e^-5	0.781	SYNONYMOUS_CODING Unc-13-4B
X	16222278	X_16222278_SNP [dm3] X_16328245_SNP [dm6]	G	A	7.835e^-5	0.781	UTR_3_PRIME CalpC DOWNSTREAM CG9919
2R	10662899	2R_10662899_SNP [dm3] 2R_14775394_SNP [dm6]	G	A	7.895e^-5	0.781	SYNONYMOUS_CODING kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9153967	3R_9153967_SNP [dm3] 3R_13328245_SNP [dm6]	A	G	7.909e^-5	0.781	DOWNSTREAM PK2-R2 INTERGENIC
2L	17858252	2L_17858252_SNP [dm3] 2L_17858252_SNP [dm6]	C	T	7.919e^-5	0.781	INTRON CadN2
2L	17858361	2L_17858361_SNP [dm3] 2L_17858361_SNP [dm6]	C	G	7.919e^-5	0.781	INTRON CadN2
2L	18075085	2L_18075085_SNP [dm3] 2L_18075085_SNP [dm6]	C	A	7.979e^-5	0.781	INTERGENIC
2R	9688613	2R_9688613_SNP [dm3] 2R_13801108_SNP [dm6]	G	A	8.060e^-5	0.781	INTRON Cpr50Cb
3R	7339782	3R_7339782_SNP [dm3] 3R_11514060_SNP [dm6]	T	G	8.165e^-5	0.781	INTERGENIC
2L	18533395	2L_18533395_SNP [dm3] 2L_18533395_SNP [dm6]	C	T	8.185e^-5	0.781	SYNONYMOUS_CODING Pde11 UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad
3L	13167772	3L_13167772_SNP [dm3] 3L_13174672_SNP [dm6]	C	T	8.200e^-5	0.781	SYNONYMOUS_CODING snky
X	17715730	X_17715730_SNP [dm3] X_17821697_SNP [dm6]	T	A	8.233e^-5	0.781	UTR_3_PRIME Socs16D
3R	16773450	3R_16773450_SNP [dm3] 3R_20947728_SNP [dm6]	C	G	8.237e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	17878092	2L_17878092_SNP [dm3] 2L_17878092_SNP [dm6]	C	T	8.239e^-5	0.781	INTERGENIC
3L	8842601	3L_8842601_SNP [dm3] 3L_8849501_SNP [dm6]	T	C	8.258e^-5	0.781	INTRON dally
X	16144763	X_16144763_SNP [dm3] X_16250730_SNP [dm6]	A	G	8.342e^-5	0.781	INTERGENIC
2R	8593460	2R_8593460_SNP [dm3] 2R_12705955_SNP [dm6]	C	A	8.461e^-5	0.781	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7320038	3R_7320038_SNP [dm3] 3R_11494316_SNP [dm6]	T	C	8.512e^-5	0.781	INTERGENIC
3R	16773725	3R_16773725_SNP [dm3] 3R_20948003_SNP [dm6]	T	C	8.553e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
2L	17862158	2L_17862158_SNP [dm3] 2L_17862158_SNP [dm6]	C	T	8.590e^-5	0.781	INTRON CadN2
3L	3079473	3L_3079473_SNP [dm3] 3L_3079473_SNP [dm6]	A	G	8.618e^-5	0.781	INTRON CG11486
3R	6595652	3R_6595652_SNP [dm3] 3R_10769930_SNP [dm6]	A	G	8.631e^-5	0.781	UTR_3_PRIME CG45076 DOWNSTREAM CG45076 INTRON CG45076
3L	13079487	3L_13079487_SNP [dm3] 3L_13086387_SNP [dm6]	G	A	8.654e^-5	0.781	UTR_3_PRIME CG17300	TF binding site BDTNP1_TFBS_twi
2L	5436596	2L_5436596_SNP [dm3] 2L_5436596_SNP [dm6]	C	T	8.746e^-5	0.781	EXON CR31647
2R	19793122	2R_19793122_SNP [dm3] 2R_23905599_SNP [dm6]	G	T	8.768e^-5	0.781	SPLICE_SITE_REGION Nap1 DOWNSTREAM CG13562 INTRON Nap1	TF binding site mE1_TFBS_sens
2L	17850870	2L_17850870_SNP [dm3] 2L_17850870_SNP [dm6]	A	T	8.779e^-5	0.781	INTRON CadN2
3R	6966359	3R_6966359_SNP [dm3] 3R_11140637_SNP [dm6]	C	A	8.812e^-5	0.781	DOWNSTREAM CG4706 INTERGENIC
2L	11478152	2L_11478152_SNP [dm3] 2L_11478152_SNP [dm6]	C	T	8.818e^-5	0.781	INTERGENIC
2L	17886984	2L_17886984_DEL [dm3] 2L_17886984_DEL [dm6]	AAAT	G	8.830e^-5	0.781	INTERGENIC
3L	13079458	3L_13079458_DEL [dm3] 3L_13086358_DEL [dm6]	ACATA	A	8.850e^-5	0.781	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4421290	2R_4421290_SNP [dm3] 2R_8533785_SNP [dm6]	C	T	8.861e^-5	0.781	INTERGENIC
3R	6983782	3R_6983782_SNP [dm3] 3R_11158060_SNP [dm6]	C	A	9.036e^-5	0.781	INTRON Ugt86Da
3R	23183032	3R_23183032_SNP [dm3] 3R_27357310_SNP [dm6]	T	A	9.120e^-5	0.781	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6582968	3R_6582968_SNP [dm3] 3R_10757246_SNP [dm6]	C	G	9.166e^-5	0.781	INTRON CR45015 & 1 other
3R	6982814	3R_6982814_SNP [dm3] 3R_11157092_SNP [dm6]	G	A	9.264e^-5	0.781	UPSTREAM Ugt86Da DOWNSTREAM Ugt86Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17001969	3R_17001969_SNP [dm3] 3R_21176247_SNP [dm6]	C	T	9.305e^-5	0.781	INTRON SNF4Agamma
3R	16960102	3R_16960102_SNP [dm3] 3R_21134380_SNP [dm6]	C	A	9.311e^-5	0.781	UTR_5_PRIME Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl
X	9425177	X_9425177_DEL [dm3] X_9531144_DEL [dm6]	AA	A	9.341e^-5	0.781	INTRON CG32700
3R	6975124	3R_6975124_SNP [dm3] 3R_11149402_SNP [dm6]	A	G	9.454e^-5	0.781	INTERGENIC
3R	18384025	3R_18384025_SNP [dm3] 3R_22558303_SNP [dm6]	G	T	9.501e^-5	0.781	DOWNSTREAM CG5278 INTERGENIC
X	10321786	X_10321786_SNP [dm3] X_10427753_SNP [dm6]	C	A	9.516e^-5	0.781	INTRON CG32683
3L	17996511	3L_17996511_SNP [dm3] 3L_18003411_SNP [dm6]	C	G	9.579e^-5	0.781	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	13590364	3L_13590364_SNP [dm3] 3L_13597264_SNP [dm6]	G	C	9.597e^-5	0.781	INTRON bru-3
X	16130895	X_16130895_SNP [dm3] X_16236862_SNP [dm6]	T	A	9.604e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
2L	3492033	2L_3492033_SNP [dm3] 2L_3492033_SNP [dm6]	T	C	9.654e^-5	0.781	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16964541	3R_16964541_SNP [dm3] 3R_21138819_SNP [dm6]	A	C	9.689e^-5	0.781	UTR_5_PRIME meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13875937	2L_13875937_SNP [dm3] 2L_13875937_SNP [dm6]	G	A	9.715e^-5	0.781	INTRON CenG1A
2L	17713619	2L_17713619_SNP [dm3] 2L_17713619_SNP [dm6]	G	A	9.718e^-5	0.781	INTRON CadN
3R	6429293	3R_6429293_SNP [dm3] 3R_10603571_SNP [dm6]	A	T	9.803e^-5	0.781	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	10663035	2R_10663035_SNP [dm3] 2R_14775530_SNP [dm6]	A	T	9.803e^-5	0.781	INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6291812	2L_6291812_SNP [dm3] 2L_6291812_SNP [dm6]	A	G	9.814e^-5	0.781	DOWNSTREAM Ddr INTRON Ddr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17886995	2L_17886995_DEL [dm3] 2L_17886995_DEL [dm6]	GTGAT	A	9.831e^-5	0.781	INTERGENIC
2L	17887003	2L_17887003_SNP [dm3] 2L_17887003_SNP [dm6]	G	T	9.831e^-5	0.781	INTERGENIC
3L	17046857	3L_17046857_SNP [dm3] 3L_17053757_SNP [dm6]	G	A	9.900e^-5	0.781	INTRON rogdi	TF binding site BDTNP1_TFBS_da
3L	9628720	3L_9628720_SNP [dm3] 3L_9635620_SNP [dm6]	G	C	9.964e^-5	0.781	INTRON fry
3R	16773441	3R_16773441_SNP [dm3] 3R_20947719_SNP [dm6]	T	C	9.976e^-5	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	9845474	X_9845474_SNP [dm3] X_9951441_SNP [dm6]	G	T	9.998e^-5	0.781	INTERGENIC
2L	13146442	2L_13146442_SNP [dm3] 2L_13146442_SNP [dm6]	C	A	1.002e^-4	0.781	UPSTREAM CR44199 INTERGENIC
3R	23299899	3R_23299899_SNP [dm3] 3R_27474177_SNP [dm6]	G	T	1.003e^-4	0.781	INTERGENIC
3R	6638300	3R_6638300_SNP [dm3] 3R_10812578_SNP [dm6]	G	A	1.004e^-4	0.781	SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693 INTRON CG14693
3R	6224211	3R_6224211_SNP [dm3] 3R_10398489_SNP [dm6]	G	C	1.012e^-4	0.781	SYNONYMOUS_CODING cwo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2552346	3L_2552346_SNP [dm3] 3L_2552346_SNP [dm6]	G	C	1.012e^-4	0.781	INTRON Spn	TF binding site BDTNP1_TFBS_dl
3L	7094311	3L_7094311_SNP [dm3] 3L_7101211_SNP [dm6]	C	T	1.020e^-4	0.781	INTRON form3
3R	7060355	3R_7060355_SNP [dm3] 3R_11234633_SNP [dm6]	C	A	1.022e^-4	0.781	NON_SYNONYMOUS_CODING Arfip UPSTREAM CG17721	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	6602445	3R_6602445_SNP [dm3] 3R_10776723_SNP [dm6]	A	G	1.025e^-4	0.781	INTRON CG45076 & 2 others	TF binding site BDTNP1_TFBS_twi
3R	7347106	3R_7347106_SNP [dm3] 3R_11521384_SNP [dm6]	T	C	1.028e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17252141	2R_17252141_INS [dm3] 2R_21364636_INS [dm6]	T	TCCG	1.031e^-4	0.781	INTRON cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16967141	3R_16967141_SNP [dm3] 3R_21141419_SNP [dm6]	C	T	1.034e^-4	0.781	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14450910	2L_14450910_SNP [dm3] 2L_14450910_SNP [dm6]	A	G	1.041e^-4	0.781	UTR_5_PRIME CG15283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	6985311	3R_6985311_SNP [dm3] 3R_11159589_SNP [dm6]	G	T	1.048e^-4	0.781	UTR_3_PRIME Ugt86Da
3L	13573672	3L_13573672_SNP [dm3] 3L_13580572_SNP [dm6]	G	T	1.050e^-4	0.781	INTRON bru-3
2R	17593956	2R_17593956_SNP [dm3] 2R_21706451_SNP [dm6]	G	A	1.054e^-4	0.781	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19218498	3L_19218498_SNP [dm3] 3L_19225398_SNP [dm6]	T	C	1.062e^-4	0.781	INTRON fz2
3R	16773374	3R_16773374_INS [dm3] 3R_20947652_INS [dm6]	G	GGAATAG	1.072e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	21137435	X_21137435_SNP [dm3] X_21266408_SNP [dm6]	A	C	1.076e^-4	0.781	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4293452	3L_4293452_SNP [dm3] 3L_4293452_SNP [dm6]	A	G	1.078e^-4	0.781	DOWNSTREAM dyl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15263192	3L_15263192_DEL [dm3] 3L_15270092_DEL [dm6]	AA	A	1.089e^-4	0.781	INTERGENIC
2L	17887001	2L_17887001_SNP [dm3] 2L_17887001_SNP [dm6]	G	A	1.090e^-4	0.781	INTERGENIC
3R	6965163	3R_6965163_SNP [dm3] 3R_11139441_SNP [dm6]	G	A	1.104e^-4	0.781	SYNONYMOUS_CODING CG4706
3R	9341885	3R_9341885_SNP [dm3] 3R_13516163_SNP [dm6]	G	A	1.107e^-4	0.781	INTERGENIC
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.109e^-4	0.781	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3L	9372926	3L_9372926_SNP [dm3] 3L_9379826_SNP [dm6]	A	G	1.110e^-4	0.781	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	11477854	2L_11477854_SNP [dm3] 2L_11477854_SNP [dm6]	C	T	1.110e^-4	0.781	INTERGENIC
2L	11477855	2L_11477855_SNP [dm3] 2L_11477855_SNP [dm6]	G	A	1.110e^-4	0.781	INTERGENIC
3R	16773350	3R_16773350_SNP [dm3] 3R_20947628_SNP [dm6]	A	G	1.114e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	6987760	3R_6987760_SNP [dm3] 3R_11162038_SNP [dm6]	C	G	1.116e^-4	0.781	SYNONYMOUS_CODING CG4757
2R	5403741	2R_5403741_SNP [dm3] 2R_9516236_SNP [dm6]	G	T	1.117e^-4	0.781	UPSTREAM brp INTRON brp
3L	10949290	3L_10949290_SNP [dm3] 3L_10956190_SNP [dm6]	A	G	1.120e^-4	0.781	INTERGENIC
X	10533273	X_10533273_INS [dm3] X_10639240_INS [dm6]	G	GC	1.120e^-4	0.781	INTRON X11Lbeta
2R	19965266	2R_19965266_SNP [dm3] 2R_24077743_SNP [dm6]	C	T	1.120e^-4	0.781	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339	TF binding site mE1_TFBS_cad
2L	17814486	2L_17814486_SNP [dm3] 2L_17814486_SNP [dm6]	C	G	1.133e^-4	0.781	INTRON CadN2
3R	21906448	3R_21906448_SNP [dm3] 3R_26080726_SNP [dm6]	T	C	1.134e^-4	0.781	INTRON dys
3R	16773358	3R_16773358_SNP [dm3] 3R_20947636_SNP [dm6]	A	T	1.134e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2763645	3L_2763645_SNP [dm3] 3L_2763645_SNP [dm6]	C	T	1.134e^-4	0.781	INTRON Mrtf
3R	6983300	3R_6983300_SNP [dm3] 3R_11157578_SNP [dm6]	A	G	1.134e^-4	0.781	INTRON Ugt86Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10725602	3L_10725602_SNP [dm3] 3L_10732502_SNP [dm6]	A	T	1.140e^-4	0.781	INTERGENIC
X	9997469	X_9997469_SNP [dm3] X_10103436_SNP [dm6]	C	A	1.144e^-4	0.781	INTRON RhoU
2R	10616846	2R_10616846_SNP [dm3] 2R_14729341_SNP [dm6]	C	A	1.146e^-4	0.781	INTERGENIC
3R	6583979	3R_6583979_SNP [dm3] 3R_10758257_SNP [dm6]	G	A	1.152e^-4	0.781	SYNONYMOUS_CODING CG31272 EXON CR45015
3L	3079550	3L_3079550_SNP [dm3] 3L_3079550_SNP [dm6]	T	A	1.162e^-4	0.781	INTRON CG11486
2L	18792029	2L_18792029_SNP [dm3] 2L_18792029_SNP [dm6]	A	G	1.170e^-4	0.781	INTRON ham
3R	16963156	3R_16963156_SNP [dm3] 3R_21137434_SNP [dm6]	G	T	1.174e^-4	0.781	SYNONYMOUS_CODING Ubpy UPSTREAM meigo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8719789	3L_8719789_SNP [dm3] 3L_8726689_SNP [dm6]	G	C	1.174e^-4	0.781	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2457601	3L_2457601_INS [dm3] 3L_2457601_INS [dm6]	A	AC	1.182e^-4	0.781	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	684965	2L_684965_DEL [dm3] 2L_684965_DEL [dm6]	TTCCTT	T	1.193e^-4	0.781	INTRON ds	TF binding site BDTNP1_TFBS_dl
2R	6047347	2R_6047347_SNP [dm3] 2R_10159842_SNP [dm6]	A	T	1.197e^-4	0.781	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23542455	3R_23542455_SNP [dm3] 3R_27716733_SNP [dm6]	G	A	1.199e^-4	0.781	INTERGENIC
3R	23668339	3R_23668339_SNP [dm3] 3R_27842617_SNP [dm6]	A	G	1.199e^-4	0.781	INTRON CG34353
2L	10459121	2L_10459121_SNP [dm3] 2L_10459121_SNP [dm6]	T	A	1.202e^-4	0.781	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9628802	3L_9628802_SNP [dm3] 3L_9635702_SNP [dm6]	C	T	1.209e^-4	0.781	SYNONYMOUS_CODING fry
X	12834180	X_12834180_SNP [dm3] X_12940147_SNP [dm6]	A	G	1.214e^-4	0.781	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	16774047	3R_16774047_SNP [dm3] 3R_20948325_SNP [dm6]	T	G	1.216e^-4	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	20887214	3R_20887214_SNP [dm3] 3R_25061492_SNP [dm6]	C	A	1.219e^-4	0.781	SYNONYMOUS_CODING Unc-13-4B
3R	16773682	3R_16773682_SNP [dm3] 3R_20947960_SNP [dm6]	T	C	1.223e^-4	0.781	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3R	23634859	3R_23634859_SNP [dm3] 3R_27809137_SNP [dm6]	G	T	1.224e^-4	0.781	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	17415406	3L_17415406_SNP [dm3] 3L_17422306_SNP [dm6]	A	G	1.232e^-4	0.781	SYNONYMOUS_CODING Sec3 UPSTREAM blot	TF binding site mE1_TFBS_Trl
3R	23531796	3R_23531796_SNP [dm3] 3R_27706074_SNP [dm6]	A	G	1.232e^-4	0.781	UTR_5_PRIME CG12428 INTRON CG12428
3R	23610794	3R_23610794_SNP [dm3] 3R_27785072_SNP [dm6]	T	C	1.232e^-4	0.781	INTRON CG34353
3R	9341846	3R_9341846_SNP [dm3] 3R_13516124_SNP [dm6]	G	A	1.239e^-4	0.781	INTERGENIC
3R	23998886	3R_23998886_SNP [dm3] 3R_28173164_SNP [dm6]	A	T	1.240e^-4	0.781	INTRON CG34354
2R	15548481	2R_15548481_SNP [dm3] 2R_19660976_SNP [dm6]	A	T	1.241e^-4	0.781	UPSTREAM mir-6-3 & 1 other DOWNSTREAM mir-6-1 & 5 others EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	151719	2L_151719_SNP [dm3] 2L_151719_SNP [dm6]	G	T	1.243e^-4	0.781	NON_SYNONYMOUS_CODING CG42399 INTRON CG11455	TF binding site mE1_TFBS_sens
3R	3820769	3R_3820769_SNP [dm3] 3R_7995047_SNP [dm6]	A	G	1.248e^-4	0.782	INTRON CG2781
3R	23660305	3R_23660305_SNP [dm3] 3R_27834583_SNP [dm6]	T	G	1.269e^-4	0.791	INTRON CG34353
3L	13573833	3L_13573833_SNP [dm3] 3L_13580733_SNP [dm6]	T	C	1.278e^-4	0.791	INTRON bru-3
3R	3133376	3R_3133376_SNP [dm3] 3R_7307654_SNP [dm6]	A	G	1.279e^-4	0.791	INTRON rn
2L	3492168	2L_3492168_SNP [dm3] 2L_3492168_SNP [dm6]	T	G	1.285e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8366872	3L_8366872_SNP [dm3] 3L_8373772_SNP [dm6]	G	A	1.287e^-4	0.791	INTRON ImpE1
3R	27447726	3R_27447726_SNP [dm3] 3R_31622004_SNP [dm6]	C	A	1.288e^-4	0.791	UTR_3_PRIME pasha UPSTREAM kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13392329	3L_13392329_SNP [dm3] 3L_13399229_SNP [dm6]	G	C	1.300e^-4	0.796	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3492145	2L_3492145_SNP [dm3] 2L_3492145_SNP [dm6]	G	A	1.307e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17646250	2L_17646250_DEL [dm3] 2L_17646250_DEL [dm6]	GATA	T	1.328e^-4	0.798	DOWNSTREAM CadN INTERGENIC
3R	24967297	3R_24967297_SNP [dm3] 3R_29141575_SNP [dm6]	C	T	1.332e^-4	0.798	INTRON CG14516
2L	17791510	2L_17791510_SNP [dm3] 2L_17791510_SNP [dm6]	T	C	1.334e^-4	0.798	UPSTREAM CR43419 INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12018981	2R_12018981_SNP [dm3] 2R_16131476_SNP [dm6]	C	T	1.337e^-4	0.798	INTRON spin	TF binding site mE1_TFBS_cad
2R	12019029	2R_12019029_SNP [dm3] 2R_16131524_SNP [dm6]	C	T	1.337e^-4	0.798	INTRON spin	TF binding site mE1_TFBS_cad
X	12834197	X_12834197_SNP [dm3] X_12940164_SNP [dm6]	T	C	1.348e^-4	0.798	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	16377495	X_16377495_SNP [dm3] X_16483462_SNP [dm6]	G	A	1.349e^-4	0.798	INTRON para
3R	17035700	3R_17035700_SNP [dm3] 3R_21209978_SNP [dm6]	G	C	1.353e^-4	0.798	INTRON SNF4Agamma
3L	13167736	3L_13167736_SNP [dm3] 3L_13174636_SNP [dm6]	T	C	1.359e^-4	0.798	SYNONYMOUS_CODING snky
2R	3507859	2R_3507859_SNP [dm3] 2R_7620354_SNP [dm6]	C	T	1.362e^-4	0.798	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_chinmo
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	1.373e^-4	0.798	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3L	13049597	3L_13049597_SNP [dm3] 3L_13056497_SNP [dm6]	A	G	1.375e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16897727	3R_16897727_INS [dm3] 3R_21072005_INS [dm6]	G	GAAGTTCAT	1.380e^-4	0.798	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16897737	3R_16897737_INS [dm3] 3R_21072015_INS [dm6]	A	AAATTGAGAA	1.380e^-4	0.798	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16473868	2L_16473868_SNP [dm3] 2L_16473868_SNP [dm6]	G	A	1.382e^-4	0.798	INTRON dac
3R	16897735	3R_16897735_SNP [dm3] 3R_21072013_SNP [dm6]	T	A	1.388e^-4	0.798	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6467159	3R_6467159_SNP [dm3] 3R_10641437_SNP [dm6]	A	C	1.393e^-4	0.798	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6957620	3R_6957620_SNP [dm3] 3R_11131898_SNP [dm6]	C	T	1.400e^-4	0.798	INTERGENIC
3R	6975008	3R_6975008_SNP [dm3] 3R_11149286_SNP [dm6]	A	T	1.401e^-4	0.798	INTERGENIC
3R	19777235	3R_19777235_INS [dm3] 3R_23951513_INS [dm6]	T	TTAACATTGGTATCAATACC...	1.404e^-4	0.798	DOWNSTREAM Aats-glupro INTERGENIC
3L	7836441	3L_7836441_SNP [dm3] 3L_7843341_SNP [dm6]	G	A	1.406e^-4	0.798	INTRON Pdp1	regulatory region REDfly_CRMs
3L	12986899	3L_12986899_DEL [dm3] 3L_12993799_DEL [dm6]	AGTGCAATGAA...	A	1.410e^-4	0.798	INTERGENIC
3R	17030949	3R_17030949_SNP [dm3] 3R_21205227_SNP [dm6]	C	T	1.419e^-4	0.798	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	13633515	3L_13633515_SNP [dm3] 3L_13640415_SNP [dm6]	C	G	1.420e^-4	0.798	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	9983633	2L_9983633_SNP [dm3] 2L_9983633_SNP [dm6]	A	G	1.423e^-4	0.798	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	9632069	3L_9632069_SNP [dm3] 3L_9638969_SNP [dm6]	T	A	1.431e^-4	0.798	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16896975	3R_16896975_SNP [dm3] 3R_21071253_SNP [dm6]	G	A	1.432e^-4	0.798	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13146448	2L_13146448_SNP [dm3] 2L_13146448_SNP [dm6]	G	A	1.433e^-4	0.798	UPSTREAM CR44199 INTERGENIC
2L	14463312	2L_14463312_SNP [dm3] 2L_14463312_SNP [dm6]	T	G	1.433e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	16770667	3R_16770667_SNP [dm3] 3R_20944945_SNP [dm6]	T	G	1.435e^-4	0.798	INTRON CG31191
2L	14452105	2L_14452105_SNP [dm3] 2L_14452105_SNP [dm6]	A	G	1.442e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	12834190	X_12834190_SNP [dm3] X_12940157_SNP [dm6]	A	C	1.450e^-4	0.801	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	13540598	3L_13540598_SNP [dm3] 3L_13547498_SNP [dm6]	G	A	1.453e^-4	0.801	INTRON bru-3	TF binding site mE1_TFBS_inv
3R	16897733	3R_16897733_SNP [dm3] 3R_21072011_SNP [dm6]	G	T	1.463e^-4	0.804	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16898767	3R_16898767_SNP [dm3] 3R_21073045_SNP [dm6]	G	T	1.466e^-4	0.804	UPSTREAM dmrt93B INTRON r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6462501	3R_6462501_SNP [dm3] 3R_10636779_SNP [dm6]	A	G	1.479e^-4	0.807	INTRON hth
2R	13296952	2R_13296952_SNP [dm3] 2R_17409447_SNP [dm6]	A	G	1.481e^-4	0.807	SYNONYMOUS_CODING CG30101
3R	23532937	3R_23532937_SNP [dm3] 3R_27707215_SNP [dm6]	G	T	1.488e^-4	0.807	SYNONYMOUS_CODING CG12877 UPSTREAM CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	15796602	3L_15796602_SNP [dm3] 3L_15803502_SNP [dm6]	A	C	1.490e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12748534	3R_12748534_SNP [dm3] 3R_16922812_SNP [dm6]	C	G	1.494e^-4	0.807	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6378534	3R_6378534_INS [dm3] 3R_10552812_INS [dm6]	A	AA	1.498e^-4	0.807	INTRON hth
2R	13294087	2R_13294087_SNP [dm3] 2R_17406582_SNP [dm6]	C	T	1.512e^-4	0.807	NON_SYNONYMOUS_CODING CG6568	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9027531	3L_9027531_SNP [dm3] 3L_9034431_SNP [dm6]	C	T	1.517e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7121924	3R_7121924_SNP [dm3] 3R_11296202_SNP [dm6]	A	G	1.537e^-4	0.807	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22742471	3R_22742471_SNP [dm3] 3R_26916749_SNP [dm6]	T	C	1.539e^-4	0.807	INTRON sda	TF binding site BDTNP1_TFBS_twi
3L	13049594	3L_13049594_SNP [dm3] 3L_13056494_SNP [dm6]	G	A	1.546e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16897729	3R_16897729_SNP [dm3] 3R_21072007_SNP [dm6]	T	A	1.548e^-4	0.807	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3449294	3L_3449294_SNP [dm3] 3L_3449294_SNP [dm6]	A	T	1.550e^-4	0.807	INTRON eIF5B
2R	19902100	2R_19902100_SNP [dm3] 2R_24014577_SNP [dm6]	A	G	1.558e^-4	0.807	UPSTREAM Unc-89 DOWNSTREAM CG4324 INTERGENIC
3R	3208928	3R_3208928_SNP [dm3] 3R_7383206_SNP [dm6]	C	A	1.566e^-4	0.807	INTERGENIC
3R	16967380	3R_16967380_DEL [dm3] 3R_21141658_DEL [dm6]	TGCTT	T	1.567e^-4	0.807	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2551852	3L_2551852_SNP [dm3] 3L_2551852_SNP [dm6]	A	C	1.568e^-4	0.807	INTRON Spn
2L	17817208	2L_17817208_SNP [dm3] 2L_17817208_SNP [dm6]	T	C	1.580e^-4	0.807	INTRON CadN2
2L	13874169	2L_13874169_SNP [dm3] 2L_13874169_SNP [dm6]	A	G	1.582e^-4	0.807	INTRON CenG1A
3R	17011802	3R_17011802_DEL [dm3] 3R_21186080_DEL [dm6]	TTCATTGACAACCCGCGAAT...	T	1.587e^-4	0.807	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	8363709	3R_8363709_SNP [dm3] 3R_12537987_SNP [dm6]	A	T	1.590e^-4	0.807	INTRON Octbeta3R
2R	6723605	2R_6723605_SNP [dm3] 2R_10836100_SNP [dm6]	G	A	1.592e^-4	0.807	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
2R	17524393	2R_17524393_SNP [dm3] 2R_21636888_SNP [dm6]	T	G	1.595e^-4	0.807	NON_SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17787390	2L_17787390_SNP [dm3] 2L_17787390_SNP [dm6]	C	A	1.598e^-4	0.807	UTR_3_PRIME CadN2
3L	14149920	3L_14149920_SNP [dm3] 3L_14156820_SNP [dm6]	A	T	1.606e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs
3L	14130257	3L_14130257_INS [dm3] 3L_14137157_INS [dm6]	C	CAAGATC	1.609e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	13399467	3R_13399467_SNP [dm3] 3R_17573745_SNP [dm6]	C	T	1.611e^-4	0.807	INTERGENIC
3L	9027533	3L_9027533_SNP [dm3] 3L_9034433_SNP [dm6]	G	T	1.614e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11645885	3L_11645885_DEL [dm3] 3L_11652785_DEL [dm6]	TACTAA	GT	1.615e^-4	0.807	INTRON CG32085
2R	10663037	2R_10663037_SNP [dm3] 2R_14775532_SNP [dm6]	C	T	1.616e^-4	0.807	SPLICE_SITE_REGION kn INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6467205	3R_6467205_SNP [dm3] 3R_10641483_SNP [dm6]	C	T	1.633e^-4	0.807	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13522783	3R_13522783_SNP [dm3] 3R_17697061_SNP [dm6]	A	T	1.648e^-4	0.807	INTRON osa	TF binding site mE1_TFBS_eve
3L	18693541	3L_18693541_SNP [dm3] 3L_18700441_SNP [dm6]	T	A	1.656e^-4	0.807	INTERGENIC
3L	9633254	3L_9633254_SNP [dm3] 3L_9640154_SNP [dm6]	T	C	1.658e^-4	0.807	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	3810690	X_3810690_SNP [dm3] X_3916657_SNP [dm6]	A	C	1.666e^-4	0.807	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9127105	2R_9127105_SNP [dm3] 2R_13239600_SNP [dm6]	A	G	1.667e^-4	0.807	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17768323	2L_17768323_SNP [dm3] 2L_17768323_SNP [dm6]	G	A	1.671e^-4	0.807	INTRON CadN
3R	17030959	3R_17030959_SNP [dm3] 3R_21205237_SNP [dm6]	C	T	1.678e^-4	0.807	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	20062918	2R_20062918_SNP [dm3] 2R_24175395_SNP [dm6]	G	A	1.681e^-4	0.807	SPLICE_SITE_REGION Nop60B SYNONYMOUS_CODING Nop60B UPSTREAM mRpS17 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16905265	3R_16905265_SNP [dm3] 3R_21079543_SNP [dm6]	A	T	1.686e^-4	0.807	INTRON HHEX
2L	17711701	2L_17711701_INS [dm3] 2L_17711701_INS [dm6]	T	TT	1.691e^-4	0.807	INTRON CadN
3L	11646777	3L_11646777_SNP [dm3] 3L_11653677_SNP [dm6]	T	A	1.695e^-4	0.807	INTRON CG32085
3R	22903764	3R_22903764_SNP [dm3] 3R_27078042_SNP [dm6]	T	G	1.696e^-4	0.807	INTRON CG14257
3L	9632076	3L_9632076_SNP [dm3] 3L_9638976_SNP [dm6]	C	G	1.699e^-4	0.807	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16962256	3R_16962256_SNP [dm3] 3R_21136534_SNP [dm6]	G	A	1.701e^-4	0.807	UTR_5_PRIME Ubpy INTRON Ubpy
2L	18075115	2L_18075115_SNP [dm3] 2L_18075115_SNP [dm6]	G	A	1.705e^-4	0.807	INTERGENIC
2R	10616832	2R_10616832_SNP [dm3] 2R_14729327_SNP [dm6]	T	A	1.707e^-4	0.807	INTERGENIC
3R	21266099	3R_21266099_INS [dm3] 3R_25440377_INS [dm6]	T	TT	1.709e^-4	0.807	INTRON Fur1
2R	18138754	2R_18138754_SNP [dm3] 2R_22251249_SNP [dm6]	G	A	1.712e^-4	0.807	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11643362	3L_11643362_SNP [dm3] 3L_11650262_SNP [dm6]	G	A	1.716e^-4	0.807	UTR_3_PRIME CG7339 DOWNSTREAM CG32085 & 1 other
2L	8080824	2L_8080824_INS [dm3] 2L_8080824_INS [dm6]	A	ACCA	1.719e^-4	0.807	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
2L	13296358	2L_13296358_SNP [dm3] 2L_13296358_SNP [dm6]	A	C	1.719e^-4	0.807	UTR_5_PRIME CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17927991	2L_17927991_SNP [dm3] 2L_17927991_SNP [dm6]	G	A	1.723e^-4	0.807	INTERGENIC
2R	5836939	2R_5836939_SNP [dm3] 2R_9949434_SNP [dm6]	T	C	1.723e^-4	0.807	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16897764	3R_16897764_SNP [dm3] 3R_21072042_SNP [dm6]	A	T	1.725e^-4	0.807	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16377515	X_16377515_SNP [dm3] X_16483482_SNP [dm6]	G	A	1.727e^-4	0.807	INTRON para
2R	9233910	2R_9233910_SNP [dm3] 2R_13346405_SNP [dm6]	C	T	1.733e^-4	0.807	INTRON CR44206
2R	8593458	2R_8593458_SNP [dm3] 2R_12705953_SNP [dm6]	T	C	1.736e^-4	0.807	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24088645	3R_24088645_SNP [dm3] 3R_28262923_SNP [dm6]	C	T	1.741e^-4	0.807	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	6978856	3R_6978856_SNP [dm3] 3R_11153134_SNP [dm6]	T	G	1.745e^-4	0.807	INTRON Ugt86Di
3L	477392	3L_477392_SNP [dm3] 3L_477392_SNP [dm6]	T	C	1.750e^-4	0.807	INTRON klar
2L	4961480	2L_4961480_SNP [dm3] 2L_4961480_SNP [dm6]	T	C	1.754e^-4	0.807	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_chinmo
2R	17087368	2R_17087368_SNP [dm3] 2R_21199863_SNP [dm6]	T	C	1.763e^-4	0.807	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	13577920	3R_13577920_SNP [dm3] 3R_17752198_SNP [dm6]	G	T	1.764e^-4	0.807	SYNONYMOUS_CODING TyrR
3L	10946195	3L_10946195_SNP [dm3] 3L_10953095_SNP [dm6]	G	C	1.769e^-4	0.807	INTERGENIC
3L	10697136	3L_10697136_DEL [dm3] 3L_10704036_DEL [dm6]	TT	T	1.770e^-4	0.807	INTERGENIC
3R	6980327	3R_6980327_SNP [dm3] 3R_11154605_SNP [dm6]	T	G	1.770e^-4	0.807	UPSTREAM Ugt86Dc & 1 other INTERGENIC
2R	19882904	2R_19882904_SNP [dm3] 2R_23995381_SNP [dm6]	G	T	1.775e^-4	0.807	UPSTREAM CG3860 DOWNSTREAM Unc-89 INTERGENIC
2L	19531989	2L_19531989_SNP [dm3] 2L_19531989_SNP [dm6]	G	C	1.777e^-4	0.807	NON_SYNONYMOUS_CODING CG10137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19702658	2L_19702658_SNP [dm3] 2L_19702658_SNP [dm6]	C	A	1.785e^-4	0.807	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6740046	2R_6740046_SNP [dm3] 2R_10852541_SNP [dm6]	G	T	1.785e^-4	0.807	INTRON CG30015
3R	3199024	3R_3199024_SNP [dm3] 3R_7373302_SNP [dm6]	A	C	1.785e^-4	0.807	INTERGENIC
2R	20055948	2R_20055948_SNP [dm3] 2R_24168425_SNP [dm6]	T	C	1.790e^-4	0.807	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16897806	3R_16897806_SNP [dm3] 3R_21072084_SNP [dm6]	G	A	1.792e^-4	0.807	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7058147	3R_7058147_SNP [dm3] 3R_11232425_SNP [dm6]	G	A	1.800e^-4	0.807	UTR_3_PRIME CG14701 UPSTREAM CG17187 DOWNSTREAM Arfip	TF binding site BDTNP1_TFBS_Med
3R	20760326	3R_20760326_SNP [dm3] 3R_24934604_SNP [dm6]	T	A	1.803e^-4	0.807	UTR_3_PRIME CG11771 DOWNSTREAM Osbp
3L	10978661	3L_10978661_SNP [dm3] 3L_10985561_SNP [dm6]	A	G	1.803e^-4	0.807	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3161113	3R_3161113_SNP [dm3] 3R_7335391_SNP [dm6]	C	A	1.808e^-4	0.807	INTERGENIC
3R	23998897	3R_23998897_DEL [dm3] 3R_28173175_DEL [dm6]	TT	T	1.814e^-4	0.807	INTRON CG34354
3L	7769557	3L_7769557_SNP [dm3] 3L_7776457_SNP [dm6]	G	T	1.824e^-4	0.81	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3L	13078647	3L_13078647_DEL [dm3] 3L_13085547_DEL [dm6]	TT	T	1.839e^-4	0.811	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14825666	X_14825666_SNP [dm3] X_14931633_SNP [dm6]	A	G	1.840e^-4	0.811	INTRON Flo2	TF binding site mE1_TFBS_HSA
3L	3513785	3L_3513785_SNP [dm3] 3L_3513785_SNP [dm6]	A	G	1.844e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12115906	3L_12115906_SNP [dm3] 3L_12122806_SNP [dm6]	C	G	1.845e^-4	0.811	INTRON yps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9027662	3L_9027662_SNP [dm3] 3L_9034562_SNP [dm6]	C	G	1.849e^-4	0.811	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16149038	2R_16149038_SNP [dm3] 2R_20261533_SNP [dm6]	G	A	1.854e^-4	0.812	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5403756	2R_5403756_SNP [dm3] 2R_9516251_SNP [dm6]	T	C	1.872e^-4	0.814	UPSTREAM brp INTRON brp
3L	13079523	3L_13079523_SNP [dm3] 3L_13086423_SNP [dm6]	C	A	1.886e^-4	0.814	UTR_3_PRIME CG17300	TF binding site BDTNP1_TFBS_twi
2R	17558735	2R_17558735_SNP [dm3] 2R_21671230_SNP [dm6]	A	G	1.888e^-4	0.814	SYNONYMOUS_CODING NC2alpha UPSTREAM CG15676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12730396	X_12730396_SNP [dm3] X_12836363_SNP [dm6]	C	T	1.893e^-4	0.814	INTRON Pde9
3R	6584042	3R_6584042_SNP [dm3] 3R_10758320_SNP [dm6]	C	T	1.899e^-4	0.814	SYNONYMOUS_CODING CG31272 DOWNSTREAM CR45015
2L	13875961	2L_13875961_SNP [dm3] 2L_13875961_SNP [dm6]	T	C	1.899e^-4	0.814	INTRON CenG1A
3R	25142377	3R_25142377_SNP [dm3] 3R_29316655_SNP [dm6]	C	T	1.899e^-4	0.814	INTRON Cnx99A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13375062	3L_13375062_SNP [dm3] 3L_13381962_SNP [dm6]	A	C	1.904e^-4	0.814	UPSTREAM CG14107 & 1 other INTERGENIC
3L	9633246	3L_9633246_SNP [dm3] 3L_9640146_SNP [dm6]	T	C	1.908e^-4	0.814	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7440705	2R_7440705_MNP [dm3] 2R_11553200_MNP [dm6]	ACT	CGA	1.909e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16949105	3R_16949105_SNP [dm3] 3R_21123383_SNP [dm6]	C	A	1.918e^-4	0.814	INTRON slmb
X	2886487	X_2886487_SNP [dm3] X_2992454_SNP [dm6]	T	A	1.919e^-4	0.814	INTRON kirre
2L	9379108	2L_9379108_DEL [dm3] 2L_9379108_DEL [dm6]	GG	T	1.924e^-4	0.814	INTRON Shawl
X	534829	X_534829_SNP [dm3] X_640796_SNP [dm6]	C	G	1.924e^-4	0.814	SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo
3R	19188147	3R_19188147_SNP [dm3] 3R_23362425_SNP [dm6]	G	A	1.925e^-4	0.814	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17918030	2L_17918030_SNP [dm3] 2L_17918030_SNP [dm6]	A	G	1.932e^-4	0.814	DOWNSTREAM CR43274 INTERGENIC
2L	10820336	2L_10820336_SNP [dm3] 2L_10820336_SNP [dm6]	C	T	1.934e^-4	0.814	NON_SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos
3R	3157472	3R_3157472_SNP [dm3] 3R_7331750_SNP [dm6]	C	T	1.945e^-4	0.817	EXON CR44337
2L	14501788	2L_14501788_SNP [dm3] 2L_14501788_SNP [dm6]	G	A	1.951e^-4	0.818	INTERGENIC
3R	6989409	3R_6989409_SNP [dm3] 3R_11163687_SNP [dm6]	T	C	1.965e^-4	0.822	DOWNSTREAM CG4757 & 1 other INTERGENIC
2R	12425792	2R_12425792_SNP [dm3] 2R_16538287_SNP [dm6]	C	A	1.975e^-4	0.824	INTERGENIC
2R	12764153	2R_12764153_SNP [dm3] 2R_16876648_SNP [dm6]	C	T	1.983e^-4	0.824	NON_SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_chinmo
3L	15659586	3L_15659586_DEL [dm3] 3L_15666486_DEL [dm6]	GTTTCCTTTATTTTTGG...	G	1.986e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10461407	2L_10461407_SNP [dm3] 2L_10461407_SNP [dm6]	C	A	1.988e^-4	0.824	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3L	5663056	3L_5663056_SNP [dm3] 3L_5669956_SNP [dm6]	T	C	1.995e^-4	0.824	INTRON sif
3R	3815405	3R_3815405_DEL [dm3] 3R_7989683_DEL [dm6]	GCGGTGAGACGG...	G	1.998e^-4	0.824	INTRON CG2781
2R	20211258	2R_20211258_SNP [dm3] 2R_24323735_SNP [dm6]	A	C	2.012e^-4	0.824	INTERGENIC
3R	6440925	3R_6440925_SNP [dm3] 3R_10615203_SNP [dm6]	C	T	2.030e^-4	0.824	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14265035	3L_14265035_SNP [dm3] 3L_14271935_SNP [dm6]	C	A	2.030e^-4	0.824	INTERGENIC
X	7998264	X_7998264_SNP [dm3] X_8104231_SNP [dm6]	T	C	2.037e^-4	0.824	NON_SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
2L	17926668	2L_17926668_SNP [dm3] 2L_17926668_SNP [dm6]	T	C	2.037e^-4	0.824	INTERGENIC
2L	17930574	2L_17930574_DEL [dm3] 2L_17930574_DEL [dm6]	CG	C	2.037e^-4	0.824	INTERGENIC
2L	17936504	2L_17936504_INS [dm3] 2L_17936504_INS [dm6]	G	TAA	2.037e^-4	0.824	INTERGENIC
3R	16898278	3R_16898278_SNP [dm3] 3R_21072556_SNP [dm6]	G	A	2.039e^-4	0.824	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10735815	3R_10735815_SNP [dm3] 3R_14910093_SNP [dm6]	T	C	2.041e^-4	0.824	INTERGENIC
3R	10735817	3R_10735817_SNP [dm3] 3R_14910095_SNP [dm6]	C	T	2.041e^-4	0.824	INTERGENIC
3L	2551765	3L_2551765_SNP [dm3] 3L_2551765_SNP [dm6]	G	C	2.054e^-4	0.827	INTRON Spn
3L	13845621	3L_13845621_SNP [dm3] 3L_13852521_SNP [dm6]	T	A	2.057e^-4	0.827	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9628841	3L_9628841_SNP [dm3] 3L_9635741_SNP [dm6]	C	T	2.062e^-4	0.827	SYNONYMOUS_CODING fry
3R	22790453	3R_22790453_SNP [dm3] 3R_26964731_SNP [dm6]	T	G	2.065e^-4	0.827	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	6638638	3R_6638638_SNP [dm3] 3R_10812916_SNP [dm6]	G	A	2.069e^-4	0.827	NON_SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693 DOWNSTREAM CG14693	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	23293373	3R_23293373_SNP [dm3] 3R_27467651_SNP [dm6]	A	G	2.074e^-4	0.827	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3L	9737481	3L_9737481_SNP [dm3] 3L_9744381_SNP [dm6]	T	A	2.079e^-4	0.827	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
2L	18075077	2L_18075077_SNP [dm3] 2L_18075077_SNP [dm6]	C	A	2.084e^-4	0.827	INTERGENIC
2L	18548621	2L_18548621_SNP [dm3] 2L_18548621_SNP [dm6]	C	T	2.086e^-4	0.827	INTRON Pde11	TF binding site mE1_TFBS_inv
3L	15345679	3L_15345679_SNP [dm3] 3L_15352579_SNP [dm6]	A	G	2.098e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2659778	3L_2659778_SNP [dm3] 3L_2659778_SNP [dm6]	C	T	2.099e^-4	0.827	INTRON Fife & 1 other
3R	9217803	3R_9217803_DEL [dm3] 3R_13392081_DEL [dm6]	TCGAAT	T	2.100e^-4	0.827	INTRON CCHa2	TF binding site mE1_TFBS_inv
X	9845501	X_9845501_SNP [dm3] X_9951468_SNP [dm6]	G	A	2.116e^-4	0.831	INTERGENIC
2L	3492189	2L_3492189_SNP [dm3] 2L_3492189_SNP [dm6]	T	A	2.121e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6577663	3R_6577663_SNP [dm3] 3R_10751941_SNP [dm6]	C	T	2.131e^-4	0.833	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3L	13079454	3L_13079454_SNP [dm3] 3L_13086354_SNP [dm6]	T	A	2.140e^-4	0.833	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	955633	2L_955633_SNP [dm3] 2L_955633_SNP [dm6]	A	G	2.142e^-4	0.833	INTRON CG4341
2R	19625277	2R_19625277_SNP [dm3] 2R_23737754_SNP [dm6]	C	T	2.154e^-4	0.833	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18091327	2R_18091327_SNP [dm3] 2R_22203822_SNP [dm6]	G	A	2.156e^-4	0.833	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
3L	3785248	3L_3785248_SNP [dm3] 3L_3785248_SNP [dm6]	T	C	2.166e^-4	0.833	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
3L	11526225	3L_11526225_SNP [dm3] 3L_11533125_SNP [dm6]	C	T	2.167e^-4	0.833	INTRON Mob2
3L	6091993	3L_6091993_SNP [dm3] 3L_6098893_SNP [dm6]	C	A	2.167e^-4	0.833	INTRON Ets65A
2L	13875819	2L_13875819_SNP [dm3] 2L_13875819_SNP [dm6]	T	G	2.172e^-4	0.833	INTRON CenG1A
3L	6179416	3L_6179416_SNP [dm3] 3L_6186316_SNP [dm6]	G	A	2.172e^-4	0.833	UTR_3_PRIME D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad
3R	6629847	3R_6629847_SNP [dm3] 3R_10804125_SNP [dm6]	T	A	2.173e^-4	0.833	UPSTREAM CG14692 INTERGENIC
3R	17031531	3R_17031531_SNP [dm3] 3R_21205809_SNP [dm6]	C	T	2.183e^-4	0.835	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13845620	3L_13845620_SNP [dm3] 3L_13852520_SNP [dm6]	T	A	2.198e^-4	0.839	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9081589	3R_9081589_SNP [dm3] 3R_13255867_SNP [dm6]	C	T	2.211e^-4	0.842	INTRON Ace
3R	6979028	3R_6979028_SNP [dm3] 3R_11153306_SNP [dm6]	G	A	2.226e^-4	0.844	SYNONYMOUS_CODING Ugt86Di
3L	10697063	3L_10697063_SNP [dm3] 3L_10703963_SNP [dm6]	G	T	2.237e^-4	0.844	INTERGENIC
3R	3182399	3R_3182399_SNP [dm3] 3R_7356677_SNP [dm6]	T	A	2.243e^-4	0.844	INTERGENIC
3L	13845635	3L_13845635_SNP [dm3] 3L_13852535_SNP [dm6]	C	T	2.258e^-4	0.844	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	955667	2L_955667_SNP [dm3] 2L_955667_SNP [dm6]	A	G	2.263e^-4	0.844	INTRON CG4341
3R	17001702	3R_17001702_SNP [dm3] 3R_21175980_SNP [dm6]	C	A	2.267e^-4	0.844	INTRON SNF4Agamma
2R	3494167	2R_3494167_SNP [dm3] 2R_7606662_SNP [dm6]	G	A	2.270e^-4	0.844	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
3R	16996038	3R_16996038_SNP [dm3] 3R_21170316_SNP [dm6]	G	A	2.270e^-4	0.844	INTRON SNF4Agamma
3L	14704938	3L_14704938_SNP [dm3] 3L_14711838_SNP [dm6]	A	G	2.274e^-4	0.844	INTRON ome
3R	27473879	3R_27473879_SNP [dm3] 3R_31648157_SNP [dm6]	T	A	2.277e^-4	0.844	INTRON kek6
X	12834188	X_12834188_SNP [dm3] X_12940155_SNP [dm6]	A	G	2.285e^-4	0.844	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	6843102	3R_6843102_SNP [dm3] 3R_11017380_SNP [dm6]	T	A	2.287e^-4	0.844	INTRON CG34114
3L	13732474	3L_13732474_SNP [dm3] 3L_13739374_SNP [dm6]	A	C	2.289e^-4	0.844	INTRON bru-3
2L	18538563	2L_18538563_SNP [dm3] 2L_18538563_SNP [dm6]	T	C	2.290e^-4	0.844	INTRON Pde11
2L	9302548	2L_9302548_SNP [dm3] 2L_9302548_SNP [dm6]	G	A	2.303e^-4	0.844	DOWNSTREAM Ggamma30A INTERGENIC
3R	14711340	3R_14711340_SNP [dm3] 3R_18885618_SNP [dm6]	T	C	2.308e^-4	0.844	INTERGENIC
2L	18532549	2L_18532549_SNP [dm3] 2L_18532549_SNP [dm6]	A	C	2.311e^-4	0.844	UTR_3_PRIME Pde11 DOWNSTREAM Pde11 & 1 other
2L	14501727	2L_14501727_SNP [dm3] 2L_14501727_SNP [dm6]	T	A	2.313e^-4	0.844	INTERGENIC
3L	5611930	3L_5611930_SNP [dm3] 3L_5618830_SNP [dm6]	G	A	2.316e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7379657	3R_7379657_SNP [dm3] 3R_11553935_SNP [dm6]	T	A	2.320e^-4	0.844	UPSTREAM CG14708 INTERGENIC
3R	25251140	3R_25251140_DEL [dm3] 3R_29425418_DEL [dm6]	CCGCA	C	2.324e^-4	0.844	INTRON Ptp99A
X	10534970	X_10534970_SNP [dm3] X_10640937_SNP [dm6]	A	G	2.330e^-4	0.844	INTRON X11Lbeta
X	6966609	X_6966609_INS [dm3] X_7072576_INS [dm6]	A	ATACA	2.339e^-4	0.844	UTR_3_PRIME CG4607
3L	13732427	3L_13732427_SNP [dm3] 3L_13739327_SNP [dm6]	C	T	2.340e^-4	0.844	INTRON bru-3
3R	13074121	3R_13074121_SNP [dm3] 3R_17248399_SNP [dm6]	T	G	2.340e^-4	0.844	UPSTREAM beat-IIb INTRON beat-IIb
2L	10459113	2L_10459113_SNP [dm3] 2L_10459113_SNP [dm6]	C	T	2.341e^-4	0.844	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19526975	2L_19526975_SNP [dm3] 2L_19526975_SNP [dm6]	T	C	2.341e^-4	0.844	UTR_3_PRIME CG10165 UPSTREAM CG10166 DOWNSTREAM CG10165 INTRON CG10137	TF binding site mE1_TFBS_Ubx
3R	6583034	3R_6583034_SNP [dm3] 3R_10757312_SNP [dm6]	T	C	2.343e^-4	0.844	INTRON CR45015 & 1 other
2L	8080820	2L_8080820_SNP [dm3] 2L_8080820_SNP [dm6]	T	A	2.345e^-4	0.844	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
3R	6986079	3R_6986079_DEL [dm3] 3R_11160357_DEL [dm6]	ACCCAC	A	2.376e^-4	0.85	UPSTREAM CG4757 DOWNSTREAM Ugt86Da INTERGENIC
3L	23191892	3L_23191892_SNP [dm3] 3L_23198792_SNP [dm6]	C	T	2.382e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	6257476	3R_6257476_SNP [dm3] 3R_10431754_SNP [dm6]	G	A	2.386e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6973820	3R_6973820_SNP [dm3] 3R_11148098_SNP [dm6]	T	C	2.390e^-4	0.85	INTERGENIC
3R	6642447	3R_6642447_SNP [dm3] 3R_10816725_SNP [dm6]	C	G	2.394e^-4	0.85	NON_SYNONYMOUS_CODING CG4089 SPLICE_SITE_REGION CG4089
3L	20255734	3L_20255734_SNP [dm3] 3L_20262634_SNP [dm6]	C	T	2.399e^-4	0.85	INTRON rdgC
3L	3079452	3L_3079452_SNP [dm3] 3L_3079452_SNP [dm6]	C	G	2.402e^-4	0.85	INTRON CG11486
2R	19795154	2R_19795154_SNP [dm3] 2R_23907631_SNP [dm6]	G	C	2.409e^-4	0.85	UPSTREAM kcc & 1 other DOWNSTREAM CR44806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6585644	3R_6585644_SNP [dm3] 3R_10759922_SNP [dm6]	T	A	2.413e^-4	0.85	UPSTREAM CG31272 DOWNSTREAM MED7 INTERGENIC
X	1543187	X_1543187_SNP [dm3] X_1649154_SNP [dm6]	C	T	2.413e^-4	0.85	UTR_3_PRIME br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17007606	3R_17007606_SNP [dm3] 3R_21181884_SNP [dm6]	A	C	2.413e^-4	0.85	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3R	23230824	3R_23230824_SNP [dm3] 3R_27405102_SNP [dm6]	G	A	2.419e^-4	0.85	INTRON side
3R	6454804	3R_6454804_SNP [dm3] 3R_10629082_SNP [dm6]	G	C	2.424e^-4	0.85	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	17831060	2L_17831060_SNP [dm3] 2L_17831060_SNP [dm6]	G	A	2.433e^-4	0.85	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16773493	3R_16773493_SNP [dm3] 3R_20947771_SNP [dm6]	G	C	2.450e^-4	0.85	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	21910377	3R_21910377_INS [dm3] 3R_26084655_INS [dm6]	T	TG	2.459e^-4	0.85	INTRON dys
2R	8481932	2R_8481932_SNP [dm3] 2R_12594427_SNP [dm6]	T	G	2.465e^-4	0.85	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_dl
3L	9366104	3L_9366104_SNP [dm3] 3L_9373004_SNP [dm6]	G	T	2.470e^-4	0.85	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12169297	X_12169297_SNP [dm3] X_12275264_SNP [dm6]	T	G	2.475e^-4	0.85	DOWNSTREAM CG45603 INTRON Ten-a
3R	16773656	3R_16773656_SNP [dm3] 3R_20947934_SNP [dm6]	T	G	2.486e^-4	0.85	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3L	16300313	3L_16300313_SNP [dm3] 3L_16307213_SNP [dm6]	T	G	2.487e^-4	0.85	DOWNSTREAM CG13042 & 1 other INTERGENIC
X	13445315	X_13445315_SNP [dm3] X_13551282_SNP [dm6]	T	G	2.496e^-4	0.85	INTERGENIC
2R	16149025	2R_16149025_SNP [dm3] 2R_20261520_SNP [dm6]	A	C	2.499e^-4	0.85	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23815014	3R_23815014_DEL [dm3] 3R_27989292_DEL [dm6]	GGTAACAGCACGTGA...	G	2.501e^-4	0.85	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16814714	3R_16814714_SNP [dm3] 3R_20988992_SNP [dm6]	T	C	2.504e^-4	0.85	UPSTREAM Calx INTRON Calx
2L	10464161	2L_10464161_SNP [dm3] 2L_10464161_SNP [dm6]	A	T	2.505e^-4	0.85	NON_SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
3R	22790443	3R_22790443_SNP [dm3] 3R_26964721_SNP [dm6]	A	C	2.505e^-4	0.85	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	18075119	2L_18075119_DEL [dm3] 2L_18075119_DEL [dm6]	TTAA	T	2.514e^-4	0.85	INTERGENIC
3L	3142542	3L_3142542_SNP [dm3] 3L_3142542_SNP [dm6]	C	T	2.527e^-4	0.85	INTRON CG11537	TF binding site mE1_TFBS_HSA
3L	9822059	3L_9822059_SNP [dm3] 3L_9828959_SNP [dm6]	A	T	2.529e^-4	0.85	UPSTREAM CG43897 INTRON CG43897
2R	19984272	2R_19984272_SNP [dm3] 2R_24096749_SNP [dm6]	T	A	2.531e^-4	0.85	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17767894	2L_17767894_INS [dm3] 2L_17767894_INS [dm6]	C	CC	2.536e^-4	0.85	INTRON CadN
2L	8080801	2L_8080801_DEL [dm3] 2L_8080801_DEL [dm6]	TTTGT	C	2.550e^-4	0.85	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
3L	18236839	3L_18236839_SNP [dm3] 3L_18243739_SNP [dm6]	T	G	2.550e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23669794	3R_23669794_SNP [dm3] 3R_27844072_SNP [dm6]	A	G	2.558e^-4	0.85	INTRON CG34353
2L	3532845	2L_3532845_SNP [dm3] 2L_3532845_SNP [dm6]	A	C	2.560e^-4	0.85	DOWNSTREAM Che-13 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18075070	2L_18075070_SNP [dm3] 2L_18075070_SNP [dm6]	A	C	2.561e^-4	0.85	INTERGENIC
3L	2401994	3L_2401994_SNP [dm3] 3L_2401994_SNP [dm6]	A	T	2.561e^-4	0.85	INTRON CG45186
2R	8720246	2R_8720246_SNP [dm3] 2R_12832741_SNP [dm6]	C	A	2.561e^-4	0.85	INTERGENIC
3R	16770843	3R_16770843_SNP [dm3] 3R_20945121_SNP [dm6]	T	C	2.563e^-4	0.85	INTRON CG31191	TF binding site mE1_TFBS_cad
2R	10580341	2R_10580341_SNP [dm3] 2R_14692836_SNP [dm6]	A	G	2.572e^-4	0.85	INTRON mspo
X	21134254	X_21134254_SNP [dm3] X_21263227_SNP [dm6]	G	T	2.573e^-4	0.85	INTRON CG32521
2L	6272257	2L_6272257_SNP [dm3] 2L_6272257_SNP [dm6]	C	A	2.576e^-4	0.85	DOWNSTREAM CR42735 INTRON Ddr
2L	18533399	2L_18533399_DEL [dm3] 2L_18533399_DEL [dm6]	AGATGATGATGATGCTGGT...	A	2.580e^-4	0.85	UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad
3L	6377421	3L_6377421_SNP [dm3] 3L_6384321_SNP [dm6]	G	T	2.597e^-4	0.85	INTERGENIC
3L	6481217	3L_6481217_SNP [dm3] 3L_6488117_SNP [dm6]	G	A	2.602e^-4	0.85	SYNONYMOUS_CODING CG10147 UPSTREAM CG8270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
2L	14378786	2L_14378786_INS [dm3] 2L_14378786_INS [dm6]	T	TG	2.606e^-4	0.85	UTR_3_PRIME ppk
2R	18842918	2R_18842918_SNP [dm3] 2R_22955395_SNP [dm6]	A	T	2.609e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22798105	3R_22798105_SNP [dm3] 3R_26972383_SNP [dm6]	T	G	2.613e^-4	0.85	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
2R	18461917	2R_18461917_SNP [dm3] 2R_22574412_SNP [dm6]	G	A	2.614e^-4	0.85	INTRON dnr1
2R	13954270	2R_13954270_SNP [dm3] 2R_18066765_SNP [dm6]	A	T	2.624e^-4	0.85	INTRON CG34386
3R	16770770	3R_16770770_SNP [dm3] 3R_20945048_SNP [dm6]	C	A	2.632e^-4	0.85	INTRON CG31191
X	485889	X_485889_SNP [dm3] X_591856_SNP [dm6]	G	C	2.632e^-4	0.85	SYNONYMOUS_CODING vnd INTRON vnd & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	6433525	3R_6433525_SNP [dm3] 3R_10607803_SNP [dm6]	G	C	2.641e^-4	0.85	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9308636	2R_9308636_SNP [dm3] 2R_13421131_SNP [dm6]	A	G	2.644e^-4	0.85	SYNONYMOUS_CODING CG42321
3L	18832515	3L_18832515_SNP [dm3] 3L_18839415_SNP [dm6]	A	T	2.649e^-4	0.85	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22790433	3R_22790433_SNP [dm3] 3R_26964711_SNP [dm6]	A	T	2.652e^-4	0.85	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	16963117	3R_16963117_SNP [dm3] 3R_21137395_SNP [dm6]	G	C	2.654e^-4	0.85	SYNONYMOUS_CODING Ubpy UPSTREAM meigo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11061038	2L_11061038_DEL [dm3] 2L_11061038_DEL [dm6]	ATCA	A	2.661e^-4	0.85	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11646029	3L_11646029_SNP [dm3] 3L_11652929_SNP [dm6]	C	T	2.662e^-4	0.85	INTRON CG32085
2L	2422346	2L_2422346_SNP [dm3] 2L_2422346_SNP [dm6]	A	T	2.665e^-4	0.85	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo
3R	6988073	3R_6988073_SNP [dm3] 3R_11162351_SNP [dm6]	T	C	2.665e^-4	0.85	SYNONYMOUS_CODING CG4757
X	7195683	X_7195683_SNP [dm3] X_7301650_SNP [dm6]	G	A	2.666e^-4	0.85	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6602331	3R_6602331_SNP [dm3] 3R_10776609_SNP [dm6]	T	C	2.672e^-4	0.85	INTRON CG45076 & 2 others	TF binding site BDTNP1_TFBS_twi
3L	19299647	3L_19299647_SNP [dm3] 3L_19306547_SNP [dm6]	C	T	2.673e^-4	0.85	DOWNSTREAM pip INTRON pip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14579281	2L_14579281_SNP [dm3] 2L_14579281_SNP [dm6]	G	C	2.673e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7770687	3L_7770687_SNP [dm3] 3L_7777587_SNP [dm6]	A	G	2.674e^-4	0.85	UTR_3_PRIME CG32369 DOWNSTREAM CG32369	regulatory region REDfly_CRMs
2R	20044019	2R_20044019_SNP [dm3] 2R_24156496_SNP [dm6]	T	C	2.677e^-4	0.85	INTRON Dat	TF binding site mE1_TFBS_chinmo
2L	683533	2L_683533_SNP [dm3] 2L_683533_SNP [dm6]	G	A	2.677e^-4	0.85	INTRON ds
2L	3492151	2L_3492151_SNP [dm3] 2L_3492151_SNP [dm6]	T	C	2.693e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18109957	3L_18109957_SNP [dm3] 3L_18116857_SNP [dm6]	C	T	2.709e^-4	0.858	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3R	23204425	3R_23204425_SNP [dm3] 3R_27378703_SNP [dm6]	C	A	2.715e^-4	0.858	UTR_3_PRIME side INTRON side
3R	16992048	3R_16992048_SNP [dm3] 3R_21166326_SNP [dm6]	G	A	2.737e^-4	0.859	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
3R	20888726	3R_20888726_SNP [dm3] 3R_25063004_SNP [dm6]	G	A	2.743e^-4	0.859	SYNONYMOUS_CODING Unc-13-4B
3L	17046848	3L_17046848_SNP [dm3] 3L_17053748_SNP [dm6]	T	C	2.748e^-4	0.859	INTRON rogdi	TF binding site BDTNP1_TFBS_da
3L	14695420	3L_14695420_SNP [dm3] 3L_14702320_SNP [dm6]	G	A	2.755e^-4	0.859	UPSTREAM CG17177 INTRON ome
3R	6467104	3R_6467104_DEL [dm3] 3R_10641382_DEL [dm6]	GGGTGTAAAAGT...	A	2.757e^-4	0.859	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25021383	3R_25021383_SNP [dm3] 3R_29195661_SNP [dm6]	C	G	2.758e^-4	0.859	UPSTREAM CG14509 INTERGENIC
3R	3880537	3R_3880537_SNP [dm3] 3R_8054815_SNP [dm6]	C	G	2.761e^-4	0.859	INTRON CG43060
3R	6257580	3R_6257580_SNP [dm3] 3R_10431858_SNP [dm6]	C	T	2.768e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12096962	3L_12096962_SNP [dm3] 3L_12103862_SNP [dm6]	C	G	2.773e^-4	0.859	INTERGENIC
2L	17817030	2L_17817030_SNP [dm3] 2L_17817030_SNP [dm6]	G	C	2.773e^-4	0.859	INTRON CadN2
X	9103083	X_9103083_INS [dm3] X_9209050_INS [dm6]	T	TT	2.779e^-4	0.859	INTRON CG12119
3R	24130129	3R_24130129_SNP [dm3] 3R_28304407_SNP [dm6]	G	A	2.787e^-4	0.859	NON_SYNONYMOUS_CODING CG12516
2L	14375176	2L_14375176_SNP [dm3] 2L_14375176_SNP [dm6]	G	A	2.791e^-4	0.859	INTERGENIC
2L	12209853	2L_12209853_SNP [dm3] 2L_12209853_SNP [dm6]	T	A	2.801e^-4	0.859	SYNONYMOUS_CODING CG31759 INTRON aret
3L	13625689	3L_13625689_SNP [dm3] 3L_13632589_SNP [dm6]	T	A	2.803e^-4	0.859	INTRON bru-3
2R	6723623	2R_6723623_SNP [dm3] 2R_10836118_SNP [dm6]	T	G	2.809e^-4	0.859	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
3R	23220590	3R_23220590_SNP [dm3] 3R_27394868_SNP [dm6]	C	T	2.817e^-4	0.859	INTRON side
3L	9633309	3L_9633309_SNP [dm3] 3L_9640209_SNP [dm6]	A	C	2.818e^-4	0.859	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_HSA
3R	13981315	3R_13981315_SNP [dm3] 3R_18155593_SNP [dm6]	T	A	2.825e^-4	0.859	INTERGENIC
3R	6241937	3R_6241937_SNP [dm3] 3R_10416215_SNP [dm6]	T	C	2.826e^-4	0.859	UPSTREAM CG6345 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10765562	3R_10765562_SNP [dm3] 3R_14939840_SNP [dm6]	A	G	2.832e^-4	0.859	INTERGENIC
3R	6424113	3R_6424113_SNP [dm3] 3R_10598391_SNP [dm6]	C	T	2.839e^-4	0.859	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10171567	3R_10171567_SNP [dm3] 3R_14345845_SNP [dm6]	T	C	2.845e^-4	0.859	INTRON NK7.1
3L	14265661	3L_14265661_SNP [dm3] 3L_14272561_SNP [dm6]	T	A	2.848e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17443246	2R_17443246_SNP [dm3] 2R_21555741_SNP [dm6]	T	A	2.853e^-4	0.859	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18465814	2R_18465814_SNP [dm3] 2R_22578309_SNP [dm6]	A	G	2.853e^-4	0.859	INTRON dnr1
2L	13040146	2L_13040146_SNP [dm3] 2L_13040146_SNP [dm6]	A	G	2.857e^-4	0.859	INTRON CG9932
3L	9745899	3L_9745899_SNP [dm3] 3L_9752799_SNP [dm6]	C	A	2.858e^-4	0.859	INTRON CG42268
3L	2764030	3L_2764030_INS [dm3] 3L_2764030_INS [dm6]	T	TT	2.869e^-4	0.859	INTRON Mrtf
3L	7835117	3L_7835117_SNP [dm3] 3L_7842017_SNP [dm6]	A	G	2.870e^-4	0.859	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	6269292	3R_6269292_SNP [dm3] 3R_10443570_SNP [dm6]	C	T	2.871e^-4	0.859	INTERGENIC
3L	13845605	3L_13845605_SNP [dm3] 3L_13852505_SNP [dm6]	C	T	2.875e^-4	0.859	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13517497	3L_13517497_SNP [dm3] 3L_13524397_SNP [dm6]	T	C	2.879e^-4	0.859	UTR_3_PRIME bru-3
3L	14265658	3L_14265658_SNP [dm3] 3L_14272558_SNP [dm6]	T	A	2.882e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5141959	2L_5141959_SNP [dm3] 2L_5141959_SNP [dm6]	C	T	2.884e^-4	0.859	INTRON Msp300
2L	10459116	2L_10459116_SNP [dm3] 2L_10459116_SNP [dm6]	T	A	2.893e^-4	0.859	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23238000	3R_23238000_SNP [dm3] 3R_27412278_SNP [dm6]	A	T	2.896e^-4	0.859	INTRON side
3L	9633289	3L_9633289_SNP [dm3] 3L_9640189_SNP [dm6]	C	T	2.897e^-4	0.859	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23288448	3R_23288448_SNP [dm3] 3R_27462726_SNP [dm6]	A	C	2.897e^-4	0.859	INTERGENIC
2L	17893428	2L_17893428_SNP [dm3] 2L_17893428_SNP [dm6]	G	T	2.904e^-4	0.86	UPSTREAM CR43420 INTERGENIC
3L	4886541	3L_4886541_SNP [dm3] 3L_4886541_SNP [dm6]	G	C	2.918e^-4	0.86	INTRON CG17150
3R	11220353	3R_11220353_INS [dm3] 3R_15394631_INS [dm6]	A	AT	2.922e^-4	0.86	INTRON Rbp
2L	13951362	2L_13951362_SNP [dm3] 2L_13951362_SNP [dm6]	A	C	2.932e^-4	0.86	INTRON Ance-3
3L	14265665	3L_14265665_SNP [dm3] 3L_14272565_SNP [dm6]	T	G	2.933e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11366640	3L_11366640_SNP [dm3] 3L_11373540_SNP [dm6]	T	A	2.935e^-4	0.86	INTERGENIC
3R	10543318	3R_10543318_SNP [dm3] 3R_14717596_SNP [dm6]	C	T	2.948e^-4	0.86	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	6292114	2R_6292114_DEL [dm3] 2R_10404609_DEL [dm6]	AA	A	2.954e^-4	0.86	INTRON CG42732
2L	21827408	2L_21827408_SNP [dm3] 2L_21827408_SNP [dm6]	T	A	2.955e^-4	0.86	INTERGENIC	transposable element FlyBase
2L	16625256	2L_16625256_SNP [dm3] 2L_16625256_SNP [dm6]	A	T	2.962e^-4	0.86	INTRON CG42389
3L	9535273	3L_9535273_SNP [dm3] 3L_9542173_SNP [dm6]	T	A	2.963e^-4	0.86	DOWNSTREAM Ir67a INTERGENIC
X	8603503	X_8603503_SNP [dm3] X_8709470_SNP [dm6]	T	C	2.965e^-4	0.86	UPSTREAM Hexo2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7801937	2L_7801937_SNP [dm3] 2L_7801937_SNP [dm6]	A	T	2.970e^-4	0.86	UTR_3_PRIME r2d2 & 1 other DOWNSTREAM cdc14 & 1 other
3R	16758969	3R_16758969_SNP [dm3] 3R_20933247_SNP [dm6]	C	T	2.972e^-4	0.86	INTRON CG31191
3L	13634136	3L_13634136_SNP [dm3] 3L_13641036_SNP [dm6]	G	A	2.978e^-4	0.86	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	21896275	X_21896275_SNP [dm3] X_22494439_SNP [dm6]	G	T	2.987e^-4	0.86	INTRON l_1_G0196	transposable element FlyBase
3R	14370149	3R_14370149_SNP [dm3] 3R_18544427_SNP [dm6]	A	G	2.988e^-4	0.86	INTRON fru
X	12174952	X_12174952_SNP [dm3] X_12280919_SNP [dm6]	G	C	2.998e^-4	0.86	INTRON Ten-a
X	3427818	X_3427818_SNP [dm3] X_3533785_SNP [dm6]	A	G	3.004e^-4	0.86	INTRON CG32791	TF binding site mE1_TFBS_inv
2L	17918332	2L_17918332_SNP [dm3] 2L_17918332_SNP [dm6]	G	A	3.007e^-4	0.86	DOWNSTREAM CR43274 INTERGENIC
2R	7518853	2R_7518853_SNP [dm3] 2R_11631348_SNP [dm6]	T	A	3.009e^-4	0.86	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5820946	2R_5820946_SNP [dm3] 2R_9933441_SNP [dm6]	G	C	3.010e^-4	0.86	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6439097	3R_6439097_SNP [dm3] 3R_10613375_SNP [dm6]	T	A	3.011e^-4	0.86	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12116364	3L_12116364_SNP [dm3] 3L_12123264_SNP [dm6]	T	C	3.021e^-4	0.86	SYNONYMOUS_CODING yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16904319	3L_16904319_SNP [dm3] 3L_16911219_SNP [dm6]	A	T	3.022e^-4	0.86	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9633314	3L_9633314_DEL [dm3] 3L_9640214_DEL [dm6]	TGCACAAACGATATGCACAT...	T	3.027e^-4	0.86	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12175561	3L_12175561_SNP [dm3] 3L_12182461_SNP [dm6]	T	C	3.033e^-4	0.86	INTRON CAH2
3R	6989679	3R_6989679_SNP [dm3] 3R_11163957_SNP [dm6]	A	C	3.034e^-4	0.86	DOWNSTREAM CG4757 & 1 other INTERGENIC
2R	9092420	2R_9092420_SNP [dm3] 2R_13204915_SNP [dm6]	C	T	3.041e^-4	0.86	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10580177	2R_10580177_SNP [dm3] 2R_14692672_SNP [dm6]	A	G	3.042e^-4	0.86	INTRON mspo
3R	6598001	3R_6598001_SNP [dm3] 3R_10772279_SNP [dm6]	G	T	3.043e^-4	0.86	NON_SYNONYMOUS_CODING CG45076 DOWNSTREAM fau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23718536	3R_23718536_SNP [dm3] 3R_27892814_SNP [dm6]	G	T	3.048e^-4	0.86	INTRON CG34353
X	12400446	X_12400446_SNP [dm3] X_12506413_SNP [dm6]	T	C	3.055e^-4	0.861	INTRON CG2556
3R	22824299	3R_22824299_SNP [dm3] 3R_26998577_SNP [dm6]	T	G	3.071e^-4	0.861	INTRON RYa-R
3R	6734706	3R_6734706_SNP [dm3] 3R_10908984_SNP [dm6]	G	T	3.075e^-4	0.861	INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	3.078e^-4	0.861	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19454386	3L_19454386_SNP [dm3] 3L_19461286_SNP [dm6]	C	A	3.081e^-4	0.861	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16379635	3L_16379635_DEL [dm3] 3L_16386535_DEL [dm6]	AT	C	3.083e^-4	0.861	UTR_5_PRIME RAF2 UPSTREAM CG4729 INTRON RAF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4887056	3L_4887056_SNP [dm3] 3L_4887056_SNP [dm6]	G	A	3.089e^-4	0.861	INTRON CG17150
X	18894556	X_18894556_DEL [dm3] X_19000523_DEL [dm6]	GG	G	3.092e^-4	0.861	INTRON CG43759
3R	24088680	3R_24088680_SNP [dm3] 3R_28262958_SNP [dm6]	C	T	3.093e^-4	0.861	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	16897664	3R_16897664_SNP [dm3] 3R_21071942_SNP [dm6]	C	T	3.099e^-4	0.862	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11473722	2L_11473722_SNP [dm3] 2L_11473722_SNP [dm6]	T	A	3.111e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	18832567	3L_18832567_SNP [dm3] 3L_18839467_SNP [dm6]	A	G	3.113e^-4	0.863	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25969121	3R_25969121_SNP [dm3] 3R_30143399_SNP [dm6]	T	A	3.119e^-4	0.864	INTRON AdoR
X	3427800	X_3427800_SNP [dm3] X_3533767_SNP [dm6]	T	C	3.137e^-4	0.866	INTRON CG32791	TF binding site mE1_TFBS_inv
3L	18592365	3L_18592365_SNP [dm3] 3L_18599265_SNP [dm6]	A	T	3.137e^-4	0.866	DOWNSTREAM CR45390 & 2 others INTERGENIC
3R	23237020	3R_23237020_SNP [dm3] 3R_27411298_SNP [dm6]	T	C	3.147e^-4	0.866	INTRON side
3L	14992231	3L_14992231_SNP [dm3] 3L_14999131_SNP [dm6]	G	A	3.147e^-4	0.866	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10461413	2L_10461413_SNP [dm3] 2L_10461413_SNP [dm6]	T	C	3.151e^-4	0.866	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3L	14972202	3L_14972202_SNP [dm3] 3L_14979102_SNP [dm6]	G	T	3.172e^-4	0.869	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	22790588	3R_22790588_SNP [dm3] 3R_26964866_SNP [dm6]	T	C	3.182e^-4	0.869	UPSTREAM Tsp97E DOWNSTREAM Gr97a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	9602395	2L_9602395_SNP [dm3] 2L_9602395_SNP [dm6]	T	C	3.190e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	17831234	2L_17831234_SNP [dm3] 2L_17831234_SNP [dm6]	G	T	3.192e^-4	0.869	INTRON CadN2	TF binding site BDTNP1_TFBS_twi
2R	1238300	2R_1238300_SNP [dm3] 2R_5350795_SNP [dm6]	G	A	3.196e^-4	0.869	NON_SYNONYMOUS_CODING CG10395 DOWNSTREAM CG30441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6336295	2R_6336295_DEL [dm3] 2R_10448790_DEL [dm6]	TAGTGATTTAATAGT...	T	3.198e^-4	0.869	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	13889740	3L_13889740_SNP [dm3] 3L_13896640_SNP [dm6]	A	T	3.202e^-4	0.869	INTRON dysc
2L	955559	2L_955559_SNP [dm3] 2L_955559_SNP [dm6]	G	A	3.203e^-4	0.869	INTRON CG4341
3R	19775752	3R_19775752_SNP [dm3] 3R_23950030_SNP [dm6]	C	T	3.206e^-4	0.869	INTERGENIC
2R	6723615	2R_6723615_SNP [dm3] 2R_10836110_SNP [dm6]	C	G	3.216e^-4	0.869	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
2L	17783828	2L_17783828_SNP [dm3] 2L_17783828_SNP [dm6]	A	G	3.217e^-4	0.869	INTERGENIC
3L	19366273	3L_19366273_SNP [dm3] 3L_19373173_SNP [dm6]	T	C	3.226e^-4	0.869	INTRON CG32206
3R	7341284	3R_7341284_DEL [dm3] 3R_11515562_DEL [dm6]	CCCGTCA	C	3.236e^-4	0.869	INTERGENIC
3R	6378366	3R_6378366_SNP [dm3] 3R_10552644_SNP [dm6]	A	C	3.247e^-4	0.869	INTRON hth
3L	11646039	3L_11646039_SNP [dm3] 3L_11652939_SNP [dm6]	C	T	3.248e^-4	0.869	INTRON CG32085
2L	13608396	2L_13608396_SNP [dm3] 2L_13608396_SNP [dm6]	C	G	3.257e^-4	0.869	INTRON kuz
3L	9635491	3L_9635491_SNP [dm3] 3L_9642391_SNP [dm6]	C	T	3.262e^-4	0.869	DOWNSTREAM CG18180 INTRON fry
3L	13536056	3L_13536056_SNP [dm3] 3L_13542956_SNP [dm6]	T	C	3.265e^-4	0.869	INTRON bru-3
3R	24083675	3R_24083675_SNP [dm3] 3R_28257953_SNP [dm6]	C	T	3.269e^-4	0.869	INTERGENIC
3R	21908768	3R_21908768_SNP [dm3] 3R_26083046_SNP [dm6]	G	A	3.269e^-4	0.869	INTRON dys
3R	16963135	3R_16963135_SNP [dm3] 3R_21137413_SNP [dm6]	G	A	3.271e^-4	0.869	SYNONYMOUS_CODING Ubpy UPSTREAM meigo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18075109	2L_18075109_DEL [dm3] 2L_18075109_DEL [dm6]	AGGC	A	3.280e^-4	0.869	INTERGENIC
2L	18075124	2L_18075124_SNP [dm3] 2L_18075124_SNP [dm6]	A	T	3.280e^-4	0.869	INTERGENIC
3R	14684272	3R_14684272_SNP [dm3] 3R_18858550_SNP [dm6]	A	C	3.296e^-4	0.869	INTERGENIC
X	12085134	X_12085134_DEL [dm3] X_12191101_DEL [dm6]	AATGTGAATGTGA...	A	3.297e^-4	0.869	INTRON Ten-a
3R	9155046	3R_9155046_SNP [dm3] 3R_13329324_SNP [dm6]	T	A	3.306e^-4	0.869	UTR_3_PRIME PK2-R2
2R	8819678	2R_8819678_SNP [dm3] 2R_12932173_SNP [dm6]	A	G	3.313e^-4	0.869	SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo
2L	17713219	2L_17713219_SNP [dm3] 2L_17713219_SNP [dm6]	T	C	3.323e^-4	0.869	INTRON CadN
2R	18842923	2R_18842923_SNP [dm3] 2R_22955400_SNP [dm6]	C	T	3.328e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14005889	3L_14005889_SNP [dm3] 3L_14012789_SNP [dm6]	A	C	3.337e^-4	0.869	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16435335	3L_16435335_INS [dm3] 3L_16442235_INS [dm6]	C	CTGC	3.340e^-4	0.869	INTRON CG33158 & 1 other
X	11203492	X_11203492_SNP [dm3] X_11309459_SNP [dm6]	C	T	3.347e^-4	0.869	SYNONYMOUS_CODING Ir10a
X	9845531	X_9845531_SNP [dm3] X_9951498_SNP [dm6]	T	A	3.347e^-4	0.869	INTERGENIC
X	16740697	X_16740697_SNP [dm3] X_16846664_SNP [dm6]	A	C	3.350e^-4	0.869	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16454650	3L_16454650_SNP [dm3] 3L_16461550_SNP [dm6]	T	G	3.355e^-4	0.869	INTRON CG33158
2L	18068617	2L_18068617_SNP [dm3] 2L_18068617_SNP [dm6]	A	T	3.365e^-4	0.869	INTRON rdo
X	14574895	X_14574895_SNP [dm3] X_14680862_SNP [dm6]	C	A	3.369e^-4	0.869	SYNONYMOUS_CODING CG5321
3L	9633362	3L_9633362_SNP [dm3] 3L_9640262_SNP [dm6]	A	G	3.369e^-4	0.869	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9983576	2L_9983576_SNP [dm3] 2L_9983576_SNP [dm6]	A	G	3.392e^-4	0.869	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	6439690	3R_6439690_SNP [dm3] 3R_10613968_SNP [dm6]	C	T	3.394e^-4	0.869	UTR_5_PRIME hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6588083	2R_6588083_SNP [dm3] 2R_10700578_SNP [dm6]	G	C	3.404e^-4	0.869	INTRON stan
3L	11393481	3L_11393481_INS [dm3] 3L_11400381_INS [dm6]	A	AAAGGCACAGGCACAGGCA...	3.407e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6224217	3R_6224217_SNP [dm3] 3R_10398495_SNP [dm6]	C	T	3.410e^-4	0.869	SYNONYMOUS_CODING cwo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9883368	3L_9883368_SNP [dm3] 3L_9890268_SNP [dm6]	A	G	3.421e^-4	0.869	INTRON CalpB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	13196483	X_13196483_SNP [dm3] X_13302450_SNP [dm6]	C	T	3.422e^-4	0.869	UPSTREAM CG1764 INTERGENIC
3R	7339475	3R_7339475_SNP [dm3] 3R_11513753_SNP [dm6]	G	A	3.422e^-4	0.869	INTERGENIC
3L	13835662	3L_13835662_SNP [dm3] 3L_13842562_SNP [dm6]	T	C	3.425e^-4	0.869	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13114743	3L_13114743_SNP [dm3] 3L_13121643_SNP [dm6]	T	G	3.428e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23237024	3R_23237024_SNP [dm3] 3R_27411302_SNP [dm6]	G	T	3.431e^-4	0.869	INTRON side
3L	3785266	3L_3785266_SNP [dm3] 3L_3785266_SNP [dm6]	G	T	3.431e^-4	0.869	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
2L	19262314	2L_19262314_SNP [dm3] 2L_19262314_SNP [dm6]	G	A	3.434e^-4	0.869	UPSTREAM CR44191 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	5157642	3L_5157642_SNP [dm3] 3L_5164542_SNP [dm6]	G	A	3.438e^-4	0.869	INTRON shep
X	6439746	X_6439746_SNP [dm3] X_6545713_SNP [dm6]	A	G	3.444e^-4	0.869	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11646033	3L_11646033_SNP [dm3] 3L_11652933_SNP [dm6]	C	T	3.447e^-4	0.869	INTRON CG32085
2R	6790700	2R_6790700_SNP [dm3] 2R_10903195_SNP [dm6]	C	T	3.447e^-4	0.869	UPSTREAM CG12943 INTERGENIC
3R	20758065	3R_20758065_SNP [dm3] 3R_24932343_SNP [dm6]	C	T	3.454e^-4	0.869	NON_SYNONYMOUS_CODING CG11771	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	14447668	2L_14447668_SNP [dm3] 2L_14447668_SNP [dm6]	T	C	3.458e^-4	0.869	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10453873	3L_10453873_SNP [dm3] 3L_10460773_SNP [dm6]	C	A	3.459e^-4	0.869	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2L	11307274	2L_11307274_SNP [dm3] 2L_11307274_SNP [dm6]	A	T	3.465e^-4	0.869	UPSTREAM CR43721 INTERGENIC
X	5604059	X_5604059_SNP [dm3] X_5710026_SNP [dm6]	G	A	3.465e^-4	0.869	SYNONYMOUS_CODING CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6593889	3R_6593889_SNP [dm3] 3R_10768167_SNP [dm6]	T	C	3.465e^-4	0.869	UTR_3_PRIME CG45076 UPSTREAM TfIIFbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19797956	3R_19797956_SNP [dm3] 3R_23972234_SNP [dm6]	A	G	3.472e^-4	0.869	INTRON CG31140
3R	12951336	3R_12951336_SNP [dm3] 3R_17125614_SNP [dm6]	C	T	3.474e^-4	0.869	UPSTREAM cher DOWNSTREAM CG45079 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	17817270	2R_17817270_SNP [dm3] 2R_21929765_SNP [dm6]	A	G	3.476e^-4	0.869	SYNONYMOUS_CODING Fili
3L	13167700	3L_13167700_SNP [dm3] 3L_13174600_SNP [dm6]	G	A	3.476e^-4	0.869	SYNONYMOUS_CODING snky
3R	13555439	3R_13555439_SNP [dm3] 3R_17729717_SNP [dm6]	C	A	3.477e^-4	0.869	INTRON Lgr1
3R	6562075	3R_6562075_SNP [dm3] 3R_10736353_SNP [dm6]	C	A	3.480e^-4	0.869	UPSTREAM tomboy20 INTERGENIC
2L	18075130	2L_18075130_DEL [dm3] 2L_18075130_DEL [dm6]	TGTCCATCGAATATCC...	A	3.485e^-4	0.869	INTERGENIC
2L	10620490	2L_10620490_SNP [dm3] 2L_10620490_SNP [dm6]	C	G	3.494e^-4	0.869	SYNONYMOUS_CODING Trim9
3L	13789012	3L_13789012_SNP [dm3] 3L_13795912_SNP [dm6]	C	T	3.495e^-4	0.869	INTRON bru-3
3L	13789013	3L_13789013_SNP [dm3] 3L_13795913_SNP [dm6]	C	T	3.495e^-4	0.869	INTRON bru-3
2L	9273991	2L_9273991_SNP [dm3] 2L_9273991_SNP [dm6]	C	T	3.497e^-4	0.869	INTRON Ggamma30A
2L	545935	2L_545935_SNP [dm3] 2L_545935_SNP [dm6]	T	C	3.508e^-4	0.869	SYNONYMOUS_CODING nAChRbeta3 UTR_3_PRIME Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18075076	2L_18075076_SNP [dm3] 2L_18075076_SNP [dm6]	C	T	3.518e^-4	0.869	INTERGENIC
3R	10765237	3R_10765237_SNP [dm3] 3R_14939515_SNP [dm6]	G	A	3.527e^-4	0.869	INTERGENIC
3R	6994382	3R_6994382_SNP [dm3] 3R_11168660_SNP [dm6]	A	G	3.545e^-4	0.869	SYNONYMOUS_CODING Ugt35b UPSTREAM Ugt86De	TF binding site mE1_TFBS_inv
3R	3407430	3R_3407430_SNP [dm3] 3R_7581708_SNP [dm6]	G	A	3.546e^-4	0.869	INTRON CG34127
X	16377452	X_16377452_SNP [dm3] X_16483419_SNP [dm6]	C	A	3.549e^-4	0.869	INTRON para
3R	7014460	3R_7014460_SNP [dm3] 3R_11188738_SNP [dm6]	T	G	3.553e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2541070	3L_2541070_SNP [dm3] 3L_2541070_SNP [dm6]	G	A	3.564e^-4	0.869	UTR_5_PRIME Spn
3L	3859974	3L_3859974_SNP [dm3] 3L_3859974_SNP [dm6]	G	A	3.576e^-4	0.869	INTRON Awh
3L	9881841	3L_9881841_SNP [dm3] 3L_9888741_SNP [dm6]	C	T	3.578e^-4	0.869	UPSTREAM CalpB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10765174	3R_10765174_DEL [dm3] 3R_14939452_DEL [dm6]	GAT	TG	3.580e^-4	0.869	INTERGENIC
3R	6734649	3R_6734649_SNP [dm3] 3R_10908927_SNP [dm6]	T	C	3.581e^-4	0.869	INTERGENIC
3R	18384049	3R_18384049_SNP [dm3] 3R_22558327_SNP [dm6]	C	G	3.590e^-4	0.869	DOWNSTREAM CG5278 INTERGENIC
3L	463348	3L_463348_DEL [dm3] 3L_463348_DEL [dm6]	CTAC	C	3.597e^-4	0.869	INTRON klar	TF binding site mE1_TFBS_HSA
2L	683653	2L_683653_SNP [dm3] 2L_683653_SNP [dm6]	G	A	3.599e^-4	0.869	INTRON ds
3R	16960100	3R_16960100_SNP [dm3] 3R_21134378_SNP [dm6]	A	G	3.611e^-4	0.869	UTR_5_PRIME Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl
3L	13732502	3L_13732502_INS [dm3] 3L_13739402_INS [dm6]	A	AA	3.619e^-4	0.869	INTRON bru-3
3L	15650808	3L_15650808_SNP [dm3] 3L_15657708_SNP [dm6]	G	A	3.621e^-4	0.869	UPSTREAM Eig71Ef INTRON Eig71Eg
2R	19616718	2R_19616718_SNP [dm3] 2R_23729195_SNP [dm6]	T	C	3.632e^-4	0.869	SYNONYMOUS_CODING Sesn
3L	12096964	3L_12096964_SNP [dm3] 3L_12103864_SNP [dm6]	A	G	3.641e^-4	0.869	INTERGENIC
2L	17660174	2L_17660174_SNP [dm3] 2L_17660174_SNP [dm6]	A	T	3.646e^-4	0.869	INTRON CadN
3L	14992261	3L_14992261_SNP [dm3] 3L_14999161_SNP [dm6]	G	A	3.648e^-4	0.869	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14450388	2L_14450388_SNP [dm3] 2L_14450388_SNP [dm6]	C	T	3.650e^-4	0.869	UTR_3_PRIME CG15283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	13441932	2L_13441932_SNP [dm3] 2L_13441932_SNP [dm6]	A	G	3.651e^-4	0.869	INTRON CG42784 EXON CR45683
2L	17291821	2L_17291821_SNP [dm3] 2L_17291821_SNP [dm6]	A	G	3.660e^-4	0.869	SYNONYMOUS_CODING CG6380
3R	14284865	3R_14284865_SNP [dm3] 3R_18459143_SNP [dm6]	G	T	3.666e^-4	0.869	INTRON fru	TF binding site mE1_TFBS_inv
3R	19064249	3R_19064249_SNP [dm3] 3R_23238527_SNP [dm6]	C	T	3.669e^-4	0.869	INTRON CG4467
3R	11223019	3R_11223019_SNP [dm3] 3R_15397297_SNP [dm6]	T	A	3.675e^-4	0.869	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7171343	3L_7171343_SNP [dm3] 3L_7178243_SNP [dm6]	A	T	3.677e^-4	0.869	INTRON Dscam2
2R	6927149	2R_6927149_SNP [dm3] 2R_11039644_SNP [dm6]	T	C	3.681e^-4	0.869	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12386957	3R_12386957_SNP [dm3] 3R_16561235_SNP [dm6]	A	G	3.684e^-4	0.869	INTRON CG42342
2L	13951094	2L_13951094_SNP [dm3] 2L_13951094_SNP [dm6]	A	G	3.689e^-4	0.869	INTRON Ance-3
3R	23306983	3R_23306983_INS [dm3] 3R_27481261_INS [dm6]	T	TT	3.695e^-4	0.869	UTR_3_PRIME Cyp6a18 DOWNSTREAM Cyp6a18
3L	12015931	3L_12015931_SNP [dm3] 3L_12022831_SNP [dm6]	T	C	3.696e^-4	0.869	INTRON rols
2L	18075034	2L_18075034_SNP [dm3] 2L_18075034_SNP [dm6]	C	T	3.712e^-4	0.869	INTERGENIC
2L	16336883	2L_16336883_SNP [dm3] 2L_16336883_SNP [dm6]	T	C	3.719e^-4	0.869	NON_SYNONYMOUS_CODING CG31817
2L	18523706	2L_18523706_SNP [dm3] 2L_18523706_SNP [dm6]	T	C	3.724e^-4	0.869	INTRON CG10211 EXON CR44903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16949055	3R_16949055_DEL [dm3] 3R_21123333_DEL [dm6]	GTC	G	3.730e^-4	0.869	INTRON slmb
2L	5433502	2L_5433502_DEL [dm3] 2L_5433502_DEL [dm6]	AATAA	A	3.733e^-4	0.869	DOWNSTREAM CR43713 & 1 other EXON CR43714	TF binding site mE1_TFBS_Kr
3R	9711972	3R_9711972_SNP [dm3] 3R_13886250_SNP [dm6]	G	A	3.733e^-4	0.869	INTERGENIC
3R	23870688	3R_23870688_SNP [dm3] 3R_28044966_SNP [dm6]	G	T	3.741e^-4	0.869	INTRON CG34362
3L	12772601	3L_12772601_SNP [dm3] 3L_12779501_SNP [dm6]	C	T	3.743e^-4	0.869	SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_sens
3L	5301483	3L_5301483_SNP [dm3] 3L_5308383_SNP [dm6]	C	A	3.745e^-4	0.869	INTERGENIC
2L	16772566	2L_16772566_SNP [dm3] 2L_16772566_SNP [dm6]	G	C	3.746e^-4	0.869	INTRON Mhc	TF binding site BDTNP1_TFBS_twi
2R	1294255	2R_1294255_SNP [dm3] 2R_5406750_SNP [dm6]	A	G	3.749e^-4	0.869	INTERGENIC	transposable element FlyBase
3R	23811397	3R_23811397_SNP [dm3] 3R_27985675_SNP [dm6]	A	G	3.751e^-4	0.869	INTRON betaTub97EF
3R	23989687	3R_23989687_SNP [dm3] 3R_28163965_SNP [dm6]	G	A	3.751e^-4	0.869	INTRON CG34354
2R	13260712	2R_13260712_SNP [dm3] 2R_17373207_SNP [dm6]	A	T	3.752e^-4	0.869	INTRON mbl
3R	6585733	3R_6585733_SNP [dm3] 3R_10760011_SNP [dm6]	G	C	3.760e^-4	0.869	UPSTREAM CG31272 DOWNSTREAM MED7 INTERGENIC
2L	15367177	2L_15367177_SNP [dm3] 2L_15367177_SNP [dm6]	A	G	3.764e^-4	0.869	INTERGENIC
3R	16897032	3R_16897032_SNP [dm3] 3R_21071310_SNP [dm6]	G	A	3.768e^-4	0.869	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12181320	X_12181320_SNP [dm3] X_12287287_SNP [dm6]	A	G	3.768e^-4	0.869	INTRON Ten-a
2L	14110206	2L_14110206_SNP [dm3] 2L_14110206_SNP [dm6]	A	C	3.791e^-4	0.869	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	16746813	3L_16746813_SNP [dm3] 3L_16753713_SNP [dm6]	G	T	3.794e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1114988	3L_1114988_SNP [dm3] 3L_1114988_SNP [dm6]	A	T	3.801e^-4	0.869	INTERGENIC
3R	6594070	3R_6594070_SNP [dm3] 3R_10768348_SNP [dm6]	G	T	3.801e^-4	0.869	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta	TF binding site mE1_TFBS_HSA
2L	17906647	2L_17906647_DEL [dm3] 2L_17906647_DEL [dm6]	TATTT	T	3.808e^-4	0.869	INTERGENIC
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	3.809e^-4	0.869	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	3.809e^-4	0.869	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17713987	2L_17713987_SNP [dm3] 2L_17713987_SNP [dm6]	G	C	3.812e^-4	0.869	INTRON CadN
2L	11007216	2L_11007216_SNP [dm3] 2L_11007216_SNP [dm6]	T	C	3.820e^-4	0.869	NON_SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad
3R	22797856	3R_22797856_SNP [dm3] 3R_26972134_SNP [dm6]	G	T	3.826e^-4	0.869	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
2R	19926046	2R_19926046_SNP [dm3] 2R_24038523_SNP [dm6]	A	G	3.835e^-4	0.869	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9623104	3R_9623104_SNP [dm3] 3R_13797382_SNP [dm6]	G	C	3.839e^-4	0.869	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	13875835	2L_13875835_SNP [dm3] 2L_13875835_SNP [dm6]	A	G	3.840e^-4	0.869	INTRON CenG1A
3R	24967313	3R_24967313_SNP [dm3] 3R_29141591_SNP [dm6]	T	G	3.847e^-4	0.869	INTRON CG14516
X	15118988	X_15118988_SNP [dm3] X_15224955_SNP [dm6]	A	T	3.862e^-4	0.869	UPSTREAM CR44430 INTERGENIC
3L	2551767	3L_2551767_SNP [dm3] 3L_2551767_SNP [dm6]	C	A	3.864e^-4	0.869	INTRON Spn
2L	17713615	2L_17713615_SNP [dm3] 2L_17713615_SNP [dm6]	C	G	3.870e^-4	0.869	INTRON CadN
2R	10678470	2R_10678470_SNP [dm3] 2R_14790965_SNP [dm6]	G	A	3.872e^-4	0.869	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16398422	3L_16398422_SNP [dm3] 3L_16405322_SNP [dm6]	T	G	3.873e^-4	0.869	SPLICE_SITE_REGION fax INTRON fax
2R	12171319	2R_12171319_SNP [dm3] 2R_16283814_SNP [dm6]	C	A	3.873e^-4	0.869	NON_SYNONYMOUS_CODING CG9068 UPSTREAM CG7755	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11478692	2L_11478692_SNP [dm3] 2L_11478692_SNP [dm6]	A	G	3.878e^-4	0.869	INTERGENIC
2L	955780	2L_955780_SNP [dm3] 2L_955780_SNP [dm6]	A	G	3.879e^-4	0.869	INTRON CG4341
3R	21884666	3R_21884666_SNP [dm3] 3R_26058944_SNP [dm6]	T	A	3.879e^-4	0.869	UPSTREAM CG14550 & 2 others INTRON RpL34a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	479337	3L_479337_SNP [dm3] 3L_479337_SNP [dm6]	C	T	3.894e^-4	0.869	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	6582981	3R_6582981_SNP [dm3] 3R_10757259_SNP [dm6]	G	T	3.895e^-4	0.869	INTRON CR45015 & 1 other
2L	17713613	2L_17713613_INS [dm3] 2L_17713613_INS [dm6]	T	TTT	3.901e^-4	0.869	INTRON CadN
2L	16841972	2L_16841972_SNP [dm3] 2L_16841972_SNP [dm6]	G	T	3.905e^-4	0.869	DOWNSTREAM CG13284 & 2 others INTERGENIC
3R	25394975	3R_25394975_SNP [dm3] 3R_29569253_SNP [dm6]	C	T	3.907e^-4	0.869	INTERGENIC
3L	17231648	3L_17231648_SNP [dm3] 3L_17238548_SNP [dm6]	T	G	3.907e^-4	0.869	UPSTREAM Rbp6 DOWNSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4242135	3L_4242135_SNP [dm3] 3L_4242135_SNP [dm6]	C	T	3.913e^-4	0.869	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6443462	3R_6443462_SNP [dm3] 3R_10617740_SNP [dm6]	C	T	3.913e^-4	0.869	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18693509	3L_18693509_SNP [dm3] 3L_18700409_SNP [dm6]	T	A	3.914e^-4	0.869	INTERGENIC
3L	3277079	3L_3277079_SNP [dm3] 3L_3277079_SNP [dm6]	C	G	3.920e^-4	0.869	DOWNSTREAM CG14960 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	2256353	X_2256353_SNP [dm3] X_2362320_SNP [dm6]	A	C	3.921e^-4	0.869	INTRON ptr
3R	6960143	3R_6960143_INS [dm3] 3R_11134421_INS [dm6]	A	AAAACACTTTA...	3.930e^-4	0.869	INTERGENIC
3L	10827382	3L_10827382_DEL [dm3] 3L_10834282_DEL [dm6]	TT	T	3.931e^-4	0.869	INTERGENIC
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	3.934e^-4	0.869	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	12387300	3R_12387300_SNP [dm3] 3R_16561578_SNP [dm6]	T	C	3.937e^-4	0.869	INTRON CG42342
3L	11641103	3L_11641103_SNP [dm3] 3L_11648003_SNP [dm6]	T	C	3.948e^-4	0.869	NON_SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11642402	3L_11642402_SNP [dm3] 3L_11649302_SNP [dm6]	T	C	3.948e^-4	0.869	SYNONYMOUS_CODING CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3207758	3R_3207758_SNP [dm3] 3R_7382036_SNP [dm6]	C	A	3.950e^-4	0.869	INTERGENIC
3R	6415872	3R_6415872_SNP [dm3] 3R_10590150_SNP [dm6]	C	T	3.959e^-4	0.869	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10178225	2R_10178225_SNP [dm3] 2R_14290720_SNP [dm6]	C	A	3.965e^-4	0.869	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
2L	6272264	2L_6272264_SNP [dm3] 2L_6272264_SNP [dm6]	A	G	3.968e^-4	0.869	DOWNSTREAM CR42735 INTRON Ddr
2L	12123345	2L_12123345_SNP [dm3] 2L_12123345_SNP [dm6]	G	A	3.972e^-4	0.869	INTRON CG17211
3R	6946449	3R_6946449_SNP [dm3] 3R_11120727_SNP [dm6]	T	A	3.974e^-4	0.869	INTERGENIC
2L	11307361	2L_11307361_SNP [dm3] 2L_11307361_SNP [dm6]	A	G	3.975e^-4	0.869	UPSTREAM CR43721 INTERGENIC
3R	6988025	3R_6988025_SNP [dm3] 3R_11162303_SNP [dm6]	C	T	3.977e^-4	0.869	INTRON CG4757
3L	12806738	3L_12806738_SNP [dm3] 3L_12813638_SNP [dm6]	T	C	3.984e^-4	0.869	SYNONYMOUS_CODING CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16435066	3L_16435066_SNP [dm3] 3L_16441966_SNP [dm6]	T	C	3.990e^-4	0.869	INTRON CG33158 & 1 other
2R	4497661	2R_4497661_SNP [dm3] 2R_8610156_SNP [dm6]	C	T	3.991e^-4	0.869	SYNONYMOUS_CODING rgr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6583433	3R_6583433_SNP [dm3] 3R_10757711_SNP [dm6]	G	A	3.994e^-4	0.869	SYNONYMOUS_CODING CG31272 EXON CR45015
2L	1070360	2L_1070360_SNP [dm3] 2L_1070360_SNP [dm6]	G	A	3.995e^-4	0.869	INTRON S	TF binding site mE1_TFBS_cad
2L	12141600	2L_12141600_SNP [dm3] 2L_12141600_SNP [dm6]	G	C	4.008e^-4	0.869	INTERGENIC
3R	9166485	3R_9166485_SNP [dm3] 3R_13340763_SNP [dm6]	C	T	4.009e^-4	0.869	SYNONYMOUS_CODING PK2-R1
2R	10531450	2R_10531450_SNP [dm3] 2R_14643945_SNP [dm6]	T	C	4.019e^-4	0.869	INTERGENIC
3L	2401997	3L_2401997_SNP [dm3] 3L_2401997_SNP [dm6]	A	G	4.021e^-4	0.869	INTRON CG45186
2L	1042213	2L_1042213_SNP [dm3] 2L_1042213_SNP [dm6]	A	G	4.022e^-4	0.869	INTRON IA-2
3R	6982359	3R_6982359_SNP [dm3] 3R_11156637_SNP [dm6]	T	C	4.026e^-4	0.869	UPSTREAM Ugt86Da DOWNSTREAM Ugt86Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5403824	2R_5403824_SNP [dm3] 2R_9516319_SNP [dm6]	T	G	4.029e^-4	0.869	UPSTREAM brp INTRON brp
2L	127224	2L_127224_SNP [dm3] 2L_127224_SNP [dm6]	C	T	4.030e^-4	0.869	INTRON CG11455 & 1 other
3R	22790550	3R_22790550_SNP [dm3] 3R_26964828_SNP [dm6]	A	C	4.030e^-4	0.869	UPSTREAM Tsp97E DOWNSTREAM Gr97a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	3216941	3R_3216941_SNP [dm3] 3R_7391219_SNP [dm6]	A	G	4.033e^-4	0.869	UPSTREAM CG42650 INTERGENIC
2L	15990332	2L_15990332_SNP [dm3] 2L_15990332_SNP [dm6]	A	C	4.039e^-4	0.869	DOWNSTREAM CR43412 INTERGENIC
3R	16890835	3R_16890835_DEL [dm3] 3R_21065113_DEL [dm6]	CCAGCTTC	C	4.048e^-4	0.869	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	12399187	X_12399187_SNP [dm3] X_12505154_SNP [dm6]	G	A	4.048e^-4	0.869	INTRON CG2556
2L	9666773	2L_9666773_SNP [dm3] 2L_9666773_SNP [dm6]	T	C	4.050e^-4	0.869	INTERGENIC
2L	17740343	2L_17740343_SNP [dm3] 2L_17740343_SNP [dm6]	T	C	4.053e^-4	0.869	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16436376	X_16436376_SNP [dm3] X_16542343_SNP [dm6]	T	C	4.063e^-4	0.87	UTR_3_PRIME CG9902
2L	14666579	2L_14666579_SNP [dm3] 2L_14666579_SNP [dm6]	C	A	4.067e^-4	0.87	INTRON osp
2R	10580338	2R_10580338_SNP [dm3] 2R_14692833_SNP [dm6]	A	G	4.077e^-4	0.87	INTRON mspo
2L	15990521	2L_15990521_SNP [dm3] 2L_15990521_SNP [dm6]	C	A	4.085e^-4	0.87	DOWNSTREAM CR43412 INTERGENIC
2R	20629833	2R_20629833_SNP [dm3] 2R_24742310_SNP [dm6]	T	C	4.086e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11988504	3R_11988504_SNP [dm3] 3R_16162782_SNP [dm6]	T	C	4.089e^-4	0.87	INTRON CG6006
3L	6397805	3L_6397805_SNP [dm3] 3L_6404705_SNP [dm6]	T	C	4.091e^-4	0.87	INTRON CG42747
X	524380	X_524380_SNP [dm3] X_630347_SNP [dm6]	C	T	4.099e^-4	0.87	SYNONYMOUS_CODING l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16658635	2R_16658635_SNP [dm3] 2R_20771130_SNP [dm6]	C	T	4.110e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4211889	3L_4211889_SNP [dm3] 3L_4211889_SNP [dm6]	C	G	4.111e^-4	0.87	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3R	6946078	3R_6946078_SNP [dm3] 3R_11120356_SNP [dm6]	T	C	4.119e^-4	0.87	INTERGENIC
3R	12175794	3R_12175794_SNP [dm3] 3R_16350072_SNP [dm6]	T	A	4.124e^-4	0.87	UPSTREAM CG14879 DOWNSTREAM CG10311 INTRON Manf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3L	4886576	3L_4886576_SNP [dm3] 3L_4886576_SNP [dm6]	T	A	4.125e^-4	0.87	INTRON CG17150
2R	3702186	2R_3702186_SNP [dm3] 2R_7814681_SNP [dm6]	G	T	4.126e^-4	0.87	UTR_3_PRIME CG1882 DOWNSTREAM CG1882	TF binding site mE1_TFBS_cad
3R	19771540	3R_19771540_SNP [dm3] 3R_23945818_SNP [dm6]	G	A	4.136e^-4	0.87	INTRON CG12268
2R	19650983	2R_19650983_SNP [dm3] 2R_23763460_SNP [dm6]	C	A	4.144e^-4	0.87	INTRON CG9850
3R	21684927	3R_21684927_SNP [dm3] 3R_25859205_SNP [dm6]	T	G	4.146e^-4	0.87	INTRON CG5890
3L	7590756	3L_7590756_SNP [dm3] 3L_7597656_SNP [dm6]	T	A	4.146e^-4	0.87	INTRON CG33275
3L	7120910	3L_7120910_SNP [dm3] 3L_7127810_SNP [dm6]	T	A	4.149e^-4	0.87	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo
3L	13627442	3L_13627442_SNP [dm3] 3L_13634342_SNP [dm6]	G	C	4.151e^-4	0.87	INTRON bru-3
3R	6988063	3R_6988063_SNP [dm3] 3R_11162341_SNP [dm6]	A	G	4.164e^-4	0.871	NON_SYNONYMOUS_CODING CG4757
3L	9027530	3L_9027530_SNP [dm3] 3L_9034430_SNP [dm6]	T	C	4.167e^-4	0.871	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5836860	2R_5836860_DEL [dm3] 2R_9949355_DEL [dm6]	GGACAACTAGA...	G	4.169e^-4	0.871	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14743184	3R_14743184_SNP [dm3] 3R_18917462_SNP [dm6]	A	T	4.192e^-4	0.872	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_cnc transposable element FlyBase
X	19435050	X_19435050_DEL [dm3] X_19541017_DEL [dm6]	AGAGTATCGTTAA...	A	4.194e^-4	0.872	INTRON CG32532
2R	17576616	2R_17576616_SNP [dm3] 2R_21689111_SNP [dm6]	A	G	4.206e^-4	0.872	SYNONYMOUS_CODING CG10307 UPSTREAM CG30285	TF binding site mE1_TFBS_sens
2L	14120972	2L_14120972_SNP [dm3] 2L_14120972_SNP [dm6]	C	G	4.216e^-4	0.872	INTERGENIC
3R	7014450	3R_7014450_SNP [dm3] 3R_11188728_SNP [dm6]	A	C	4.216e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7014451	3R_7014451_SNP [dm3] 3R_11188729_SNP [dm6]	A	T	4.216e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7014462	3R_7014462_SNP [dm3] 3R_11188740_SNP [dm6]	G	A	4.216e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7014464	3R_7014464_SNP [dm3] 3R_11188742_SNP [dm6]	T	G	4.216e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20752852	3R_20752852_SNP [dm3] 3R_24927130_SNP [dm6]	T	A	4.219e^-4	0.872	DOWNSTREAM Trf4-2 INTERGENIC
2R	9689120	2R_9689120_SNP [dm3] 2R_13801615_SNP [dm6]	T	A	4.221e^-4	0.872	INTRON Cpr50Cb
2L	5896196	2L_5896196_INS [dm3] 2L_5896196_INS [dm6]	T	GCAA	4.236e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2413723	3L_2413723_SNP [dm3] 3L_2413723_SNP [dm6]	A	G	4.249e^-4	0.873	UPSTREAM CG45186 INTRON CG45186
3R	12455327	3R_12455327_SNP [dm3] 3R_16629605_SNP [dm6]	A	T	4.252e^-4	0.873	SPLICE_SITE_REGION Fas1 INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	23201834	3L_23201834_SNP [dm3] 3L_23208734_SNP [dm6]	T	A	4.255e^-4	0.873	INTRON nAChRalpha4	transposable element FlyBase
3R	6603105	3R_6603105_SNP [dm3] 3R_10777383_SNP [dm6]	C	T	4.255e^-4	0.873	UPSTREAM CG45076 & 2 others INTERGENIC
3R	21071875	3R_21071875_SNP [dm3] 3R_25246153_SNP [dm6]	A	T	4.257e^-4	0.873	UTR_3_PRIME RpS27
X	5362542	X_5362542_SNP [dm3] X_5468509_SNP [dm6]	C	G	4.271e^-4	0.873	INTRON SPR
2L	92093	2L_92093_SNP [dm3] 2L_92093_SNP [dm6]	T	A	4.273e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	11959781	3R_11959781_INS [dm3] 3R_16134059_INS [dm6]	G	GA	4.278e^-4	0.873	INTRON Sb
3R	20757670	3R_20757670_SNP [dm3] 3R_24931948_SNP [dm6]	C	T	4.280e^-4	0.873	UPSTREAM CG11771 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3052698	3L_3052698_SNP [dm3] 3L_3052698_SNP [dm6]	G	T	4.280e^-4	0.873	NON_SYNONYMOUS_CODING CG1271 UTR_5_PRIME CG1271 DOWNSTREAM CG32485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9103048	X_9103048_SNP [dm3] X_9209015_SNP [dm6]	C	G	4.284e^-4	0.873	INTRON CG12119
3R	12208748	3R_12208748_SNP [dm3] 3R_16383026_SNP [dm6]	G	C	4.287e^-4	0.873	INTRON ss	regulatory region REDfly_CRMs
3L	4887093	3L_4887093_SNP [dm3] 3L_4887093_SNP [dm6]	T	G	4.289e^-4	0.873	INTRON CG17150
2L	14462927	2L_14462927_SNP [dm3] 2L_14462927_SNP [dm6]	T	C	4.298e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9304177	2L_9304177_DEL [dm3] 2L_9304177_DEL [dm6]	GA	G	4.312e^-4	0.873	DOWNSTREAM CR42844 INTERGENIC
3L	3277072	3L_3277072_SNP [dm3] 3L_3277072_SNP [dm6]	G	A	4.315e^-4	0.873	DOWNSTREAM CG14960 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9027565	3L_9027565_SNP [dm3] 3L_9034465_SNP [dm6]	T	G	4.322e^-4	0.873	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12028559	2L_12028559_SNP [dm3] 2L_12028559_SNP [dm6]	G	A	4.334e^-4	0.873	INTRON dmGlut	TF binding site mE1_TFBS_cad
2R	8542295	2R_8542295_SNP [dm3] 2R_12654790_SNP [dm6]	C	T	4.341e^-4	0.873	SYNONYMOUS_CODING ZnT49B
X	16740687	X_16740687_SNP [dm3] X_16846654_SNP [dm6]	C	A	4.346e^-4	0.873	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6406353	3R_6406353_SNP [dm3] 3R_10580631_SNP [dm6]	T	C	4.348e^-4	0.873	DOWNSTREAM hth INTRON hth
3L	13888852	3L_13888852_SNP [dm3] 3L_13895752_SNP [dm6]	C	T	4.354e^-4	0.873	INTRON dysc
3L	14093710	3L_14093710_INS [dm3] 3L_14100610_INS [dm6]	T	TCATT	4.363e^-4	0.873	INTERGENIC
3R	21796414	3R_21796414_INS [dm3] 3R_25970692_INS [dm6]	A	ACA	4.365e^-4	0.873	INTRON CG42261
3R	6946429	3R_6946429_SNP [dm3] 3R_11120707_SNP [dm6]	G	T	4.366e^-4	0.873	INTERGENIC
3L	17493323	3L_17493323_SNP [dm3] 3L_17500223_SNP [dm6]	G	C	4.369e^-4	0.873	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5502832	2R_5502832_SNP [dm3] 2R_9615327_SNP [dm6]	C	A	4.377e^-4	0.873	INTRON Mmp2 EXON CR44069
3R	6574068	3R_6574068_SNP [dm3] 3R_10748346_SNP [dm6]	A	T	4.378e^-4	0.873	INTRON TkR86C
3L	4887067	3L_4887067_SNP [dm3] 3L_4887067_SNP [dm6]	A	T	4.381e^-4	0.873	INTRON CG17150
2R	2448277	2R_2448277_SNP [dm3] 2R_6560772_SNP [dm6]	C	A	4.382e^-4	0.873	INTRON jing	TF binding site mE1_TFBS_chinmo
3R	25314559	3R_25314559_SNP [dm3] 3R_29488837_SNP [dm6]	C	T	4.382e^-4	0.873	NON_SYNONYMOUS_CODING CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3559146	3L_3559146_SNP [dm3] 3L_3559146_SNP [dm6]	G	A	4.391e^-4	0.873	INTRON Eip63E
3R	6432171	3R_6432171_SNP [dm3] 3R_10606449_SNP [dm6]	C	A	4.395e^-4	0.873	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2850893	3R_2850893_SNP [dm3] 3R_7025171_SNP [dm6]	T	C	4.397e^-4	0.873	INTERGENIC
3L	13538056	3L_13538056_SNP [dm3] 3L_13544956_SNP [dm6]	C	G	4.397e^-4	0.873	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
2R	19616545	2R_19616545_SNP [dm3] 2R_23729022_SNP [dm6]	T	G	4.398e^-4	0.873	INTRON Sesn
3L	1431070	3L_1431070_SNP [dm3] 3L_1431070_SNP [dm6]	C	T	4.410e^-4	0.875	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	465737	X_465737_SNP [dm3] X_571704_SNP [dm6]	G	A	4.420e^-4	0.875	SYNONYMOUS_CODING Appl
X	16899139	X_16899139_SNP [dm3] X_17005106_SNP [dm6]	A	T	4.425e^-4	0.875	INTRON CG45002
3R	7068517	3R_7068517_SNP [dm3] 3R_11242795_SNP [dm6]	G	T	4.430e^-4	0.875	UTR_3_PRIME CG17734 DOWNSTREAM scpr-A INTRON CG17734	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	13974690	2L_13974690_SNP [dm3] 2L_13974690_SNP [dm6]	G	T	4.435e^-4	0.875	NON_SYNONYMOUS_CODING NimC1
3R	24967299	3R_24967299_SNP [dm3] 3R_29141577_SNP [dm6]	T	C	4.436e^-4	0.875	INTRON CG14516
2R	8849318	2R_8849318_SNP [dm3] 2R_12961813_SNP [dm6]	C	A	4.446e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9350963	2R_9350963_SNP [dm3] 2R_13463458_SNP [dm6]	T	A	4.477e^-4	0.881	INTRON arr
2L	17876740	2L_17876740_SNP [dm3] 2L_17876740_SNP [dm6]	C	G	4.483e^-4	0.882	INTERGENIC
3R	6582924	3R_6582924_SNP [dm3] 3R_10757202_SNP [dm6]	G	A	4.502e^-4	0.884	INTRON CR45015 & 1 other
2R	17253326	2R_17253326_SNP [dm3] 2R_21365821_SNP [dm6]	A	C	4.514e^-4	0.884	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14151612	2R_14151612_SNP [dm3] 2R_18264107_SNP [dm6]	C	T	4.516e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17001509	2R_17001509_SNP [dm3] 2R_21114004_SNP [dm6]	A	T	4.523e^-4	0.884	INTRON ktub
2L	12864121	2L_12864121_SNP [dm3] 2L_12864121_SNP [dm6]	T	C	4.526e^-4	0.884	INTERGENIC
X	9845102	X_9845102_INS [dm3] X_9951069_INS [dm6]	C	CT	4.530e^-4	0.884	INTERGENIC
3L	9027586	3L_9027586_SNP [dm3] 3L_9034486_SNP [dm6]	C	A	4.539e^-4	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2812490	X_2812490_SNP [dm3] X_2918457_SNP [dm6]	T	C	4.547e^-4	0.884	INTRON kirre
2R	10235456	2R_10235456_SNP [dm3] 2R_14347951_SNP [dm6]	A	T	4.549e^-4	0.884	INTRON Shroom
3R	9493159	3R_9493159_SNP [dm3] 3R_13667437_SNP [dm6]	A	G	4.549e^-4	0.884	UTR_3_PRIME Task6 DOWNSTREAM B52
3L	14150141	3L_14150141_SNP [dm3] 3L_14157041_SNP [dm6]	C	A	4.550e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs
3L	4219882	3L_4219882_SNP [dm3] 3L_4219882_SNP [dm6]	C	T	4.566e^-4	0.884	INTRON CG43367
2L	15990442	2L_15990442_SNP [dm3] 2L_15990442_SNP [dm6]	C	A	4.570e^-4	0.884	DOWNSTREAM CR43412 INTERGENIC
3R	6257443	3R_6257443_SNP [dm3] 3R_10431721_SNP [dm6]	A	C	4.574e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	524112	X_524112_SNP [dm3] X_630079_SNP [dm6]	C	G	4.576e^-4	0.884	NON_SYNONYMOUS_CODING l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8080799	2L_8080799_SNP [dm3] 2L_8080799_SNP [dm6]	G	A	4.577e^-4	0.884	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
3L	5680598	3L_5680598_SNP [dm3] 3L_5687498_SNP [dm6]	G	T	4.579e^-4	0.884	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	16035304	3L_16035304_SNP [dm3] 3L_16042204_SNP [dm6]	T	A	4.581e^-4	0.884	INTRON th	TF binding site BDTNP1_TFBS_dl
2L	955781	2L_955781_SNP [dm3] 2L_955781_SNP [dm6]	C	A	4.598e^-4	0.884	INTRON CG4341
3R	6646588	3R_6646588_SNP [dm3] 3R_10820866_SNP [dm6]	C	T	4.602e^-4	0.884	INTERGENIC
2L	11467161	2L_11467161_SNP [dm3] 2L_11467161_SNP [dm6]	A	G	4.604e^-4	0.884	INTERGENIC
2R	19232920	2R_19232920_SNP [dm3] 2R_23345397_SNP [dm6]	T	C	4.612e^-4	0.884	SYNONYMOUS_CODING CG3502
3L	7121093	3L_7121093_SNP [dm3] 3L_7127993_SNP [dm6]	A	G	4.616e^-4	0.884	SYNONYMOUS_CODING CG8629 UTR_3_PRIME BBS1 UPSTREAM CG15829
2R	9302931	2R_9302931_SNP [dm3] 2R_13415426_SNP [dm6]	T	G	4.617e^-4	0.884	UTR_3_PRIME CG42321 UPSTREAM CG30059	TF binding site mE1_TFBS_HSA
3L	11525690	3L_11525690_SNP [dm3] 3L_11532590_SNP [dm6]	G	C	4.621e^-4	0.884	INTRON Mob2
X	16138935	X_16138935_SNP [dm3] X_16244902_SNP [dm6]	T	C	4.634e^-4	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5816371	2R_5816371_SNP [dm3] 2R_9928866_SNP [dm6]	C	G	4.641e^-4	0.884	INTRON Mef2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	16897771	3R_16897771_SNP [dm3] 3R_21072049_SNP [dm6]	C	T	4.641e^-4	0.884	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17607451	2R_17607451_SNP [dm3] 2R_21719946_SNP [dm6]	T	G	4.642e^-4	0.884	UTR_5_PRIME Tango11 UPSTREAM LBR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	16368353	2L_16368353_SNP [dm3] 2L_16368353_SNP [dm6]	A	T	4.647e^-4	0.884	INTERGENIC
X	21137436	X_21137436_SNP [dm3] X_21266409_SNP [dm6]	C	T	4.647e^-4	0.884	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14795882	2L_14795882_SNP [dm3] 2L_14795882_SNP [dm6]	A	C	4.647e^-4	0.884	INTRON CG18420
3R	11988505	3R_11988505_SNP [dm3] 3R_16162783_SNP [dm6]	A	C	4.654e^-4	0.884	INTRON CG6006
3R	6206450	3R_6206450_SNP [dm3] 3R_10380728_SNP [dm6]	C	G	4.656e^-4	0.884	INTERGENIC
2R	4577316	2R_4577316_SNP [dm3] 2R_8689811_SNP [dm6]	G	A	4.669e^-4	0.884	INTERGENIC
3R	6974709	3R_6974709_DEL [dm3] 3R_11148987_DEL [dm6]	TACTCACCAT	T	4.672e^-4	0.884	INTERGENIC
3L	12806312	3L_12806312_SNP [dm3] 3L_12813212_SNP [dm6]	G	A	4.678e^-4	0.884	SYNONYMOUS_CODING CG10754 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5889835	2L_5889835_SNP [dm3] 2L_5889835_SNP [dm6]	A	C	4.678e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	475482	X_475482_SNP [dm3] X_581449_SNP [dm6]	G	A	4.682e^-4	0.884	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16841946	2L_16841946_DEL [dm3] 2L_16841946_DEL [dm6]	AA	A	4.682e^-4	0.884	DOWNSTREAM CG13284 & 2 others INTERGENIC
3R	21911220	3R_21911220_SNP [dm3] 3R_26085498_SNP [dm6]	C	T	4.706e^-4	0.886	INTRON dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16992492	3R_16992492_SNP [dm3] 3R_21166770_SNP [dm6]	T	C	4.714e^-4	0.886	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
3R	3185877	3R_3185877_SNP [dm3] 3R_7360155_SNP [dm6]	C	A	4.715e^-4	0.886	INTERGENIC	insulator Insulator_Class_II.mE01
3L	16756421	3L_16756421_SNP [dm3] 3L_16763321_SNP [dm6]	A	C	4.717e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13540206	3L_13540206_SNP [dm3] 3L_13547106_SNP [dm6]	G	T	4.721e^-4	0.886	INTRON bru-3
2R	8268804	2R_8268804_SNP [dm3] 2R_12381299_SNP [dm6]	A	G	4.725e^-4	0.886	UPSTREAM CG13155 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14743180	3R_14743180_SNP [dm3] 3R_18917458_SNP [dm6]	A	T	4.738e^-4	0.888	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_cnc transposable element FlyBase

By genomic position
Variant impact
Gene name

mn_Glucose_Pooled phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results