DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.013e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2328 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17937594	3L_17937594_SNP [dm3] 3L_17944494_SNP [dm6]	T	C	2.161e^-7	0.246	INTRON CG43174
3L	11122657	3L_11122657_SNP [dm3] 3L_11129557_SNP [dm6]	A	G	2.712e^-7	0.246	UTR_5_PRIME CG42575
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	7.080e^-7	0.271	INTRON CG32982
3R	21794488	3R_21794488_DEL [dm3] 3R_25968766_DEL [dm6]	GG	G	8.057e^-7	0.271	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21794368	3R_21794368_INS [dm3] 3R_25968646_INS [dm6]	T	TT	1.046e^-6	0.271	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	1.406e^-6	0.271	INTRON axo
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	1.413e^-6	0.271	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	1.413e^-6	0.271	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	1.413e^-6	0.271	INTRON axo
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	1.492e^-6	0.271	INTRON CG34391
2R	14346359	2R_14346359_SNP [dm3] 2R_18458854_SNP [dm6]	A	C	1.679e^-6	0.277	DOWNSTREAM CG30116 INTRON CG30116
3R	21794477	3R_21794477_SNP [dm3] 3R_25968755_SNP [dm6]	C	T	2.381e^-6	0.361	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	3.152e^-6	0.408	INTRON axo
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	3.893e^-6	0.408	INTRON fred
3L	11124419	3L_11124419_SNP [dm3] 3L_11131319_SNP [dm6]	G	T	3.955e^-6	0.408	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	11124420	3L_11124420_SNP [dm3] 3L_11131320_SNP [dm6]	G	A	3.955e^-6	0.408	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	4.032e^-6	0.408	UPSTREAM CG44252 INTERGENIC
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	4.329e^-6	0.408	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	4.329e^-6	0.408	INTRON axo
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	5.004e^-6	0.408	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	5.004e^-6	0.408	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	5.004e^-6	0.408	INTRON axo
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	5.335e^-6	0.408	UPSTREAM CG32074 INTRON CG42575
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	5.392e^-6	0.408	INTRON axo
2R	16960128	2R_16960128_SNP [dm3] 2R_21072623_SNP [dm6]	A	G	6.087e^-6	0.426	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	6.104e^-6	0.426	INTRON axo
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	6.688e^-6	0.45	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	7.553e^-6	0.473	INTRON axo
2L	9147938	2L_9147938_SNP [dm3] 2L_9147938_SNP [dm6]	T	G	7.554e^-6	0.473	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	4296467	3R_4296467_SNP [dm3] 3R_8470745_SNP [dm6]	G	A	8.018e^-6	0.486	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
2R	9656866	2R_9656866_SNP [dm3] 2R_13769361_SNP [dm6]	A	G	8.887e^-6	0.521	UPSTREAM Cpr50Ca INTERGENIC
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	9.498e^-6	0.525	UPSTREAM CG14247 INTERGENIC
3R	4325628	3R_4325628_SNP [dm3] 3R_8499906_SNP [dm6]	T	C	9.804e^-6	0.525	INTERGENIC
3L	12978525	3L_12978525_SNP [dm3] 3L_12985425_SNP [dm6]	C	T	9.823e^-6	0.525	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16959829	2R_16959829_SNP [dm3] 2R_21072324_SNP [dm6]	T	G	1.143e^-5	0.593	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2L	12491349	2L_12491349_SNP [dm3] 2L_12491349_SNP [dm6]	A	T	1.217e^-5	0.593	INTRON bun
3L	13060245	3L_13060245_SNP [dm3] 3L_13067145_SNP [dm6]	C	T	1.239e^-5	0.593	INTERGENIC
3R	8400796	3R_8400796_SNP [dm3] 3R_12575074_SNP [dm6]	A	G	1.241e^-5	0.593	INTRON Octbeta2R
3L	11112660	3L_11112660_DEL [dm3] 3L_11119560_DEL [dm6]	GA	G	1.288e^-5	0.6	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7188049	3L_7188049_SNP [dm3] 3L_7194949_SNP [dm6]	A	G	1.334e^-5	0.606	INTERGENIC
3R	4253096	3R_4253096_SNP [dm3] 3R_8427374_SNP [dm6]	G	T	1.392e^-5	0.612	INTRON CG45263
3L	11120080	3L_11120080_SNP [dm3] 3L_11126980_SNP [dm6]	T	A	1.415e^-5	0.612	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	1843145	3L_1843145_SNP [dm3] 3L_1843145_SNP [dm6]	C	T	1.544e^-5	0.652	INTERGENIC
3L	12018890	3L_12018890_SNP [dm3] 3L_12025790_SNP [dm6]	T	A	1.627e^-5	0.672	INTRON rols
2R	17810642	2R_17810642_INS [dm3] 2R_21923137_INS [dm6]	G	GG	1.681e^-5	0.679	INTRON Fili
3L	11120002	3L_11120002_SNP [dm3] 3L_11126902_SNP [dm6]	C	G	1.924e^-5	0.725	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11120016	3L_11120016_SNP [dm3] 3L_11126916_SNP [dm6]	G	A	1.924e^-5	0.725	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11120078	3L_11120078_SNP [dm3] 3L_11126978_SNP [dm6]	C	G	1.924e^-5	0.725	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	9291467	3L_9291467_SNP [dm3] 3L_9298367_SNP [dm6]	A	T	1.956e^-5	0.725	INTERGENIC
3L	11122095	3L_11122095_SNP [dm3] 3L_11128995_SNP [dm6]	T	A	2.014e^-5	0.732	UTR_5_PRIME CG42575 UPSTREAM CG42575
3R	4099775	3R_4099775_SNP [dm3] 3R_8274053_SNP [dm6]	A	C	2.133e^-5	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	6809268	2L_6809268_SNP [dm3] 2L_6809268_SNP [dm6]	T	C	2.176e^-5	0.74	INTERGENIC
3L	14095880	3L_14095880_SNP [dm3] 3L_14102780_SNP [dm6]	A	C	2.353e^-5	0.74	DOWNSTREAM Sox21a INTERGENIC
3L	16868190	3L_16868190_SNP [dm3] 3L_16875090_SNP [dm6]	T	A	2.409e^-5	0.74	INTRON Lmpt
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	2.560e^-5	0.74	INTRON CG7470
2L	19952504	2L_19952504_SNP [dm3] 2L_19952504_SNP [dm6]	G	A	2.656e^-5	0.74	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12491435	2L_12491435_SNP [dm3] 2L_12491435_SNP [dm6]	A	T	2.697e^-5	0.74	INTRON bun
3L	13935632	3L_13935632_SNP [dm3] 3L_13942532_SNP [dm6]	C	T	2.713e^-5	0.74	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17222535	3R_17222535_SNP [dm3] 3R_21396813_SNP [dm6]	G	A	2.796e^-5	0.74	DOWNSTREAM CG6475 INTERGENIC	regulatory region REDfly_CRMs
2L	9147765	2L_9147765_SNP [dm3] 2L_9147765_SNP [dm6]	C	T	2.866e^-5	0.74	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	8151464	X_8151464_SNP [dm3] X_8257431_SNP [dm6]	G	T	2.867e^-5	0.74	INTRON CG1632
2R	17752132	2R_17752132_SNP [dm3] 2R_21864627_SNP [dm6]	T	C	2.899e^-5	0.74	DOWNSTREAM comr INTERGENIC
2R	17752140	2R_17752140_SNP [dm3] 2R_21864635_SNP [dm6]	C	T	2.899e^-5	0.74	DOWNSTREAM comr INTERGENIC
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	2.997e^-5	0.74	UTR_5_PRIME CG43174
2R	15183577	2R_15183577_SNP [dm3] 2R_19296072_SNP [dm6]	G	C	3.023e^-5	0.74	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8396319	3R_8396319_SNP [dm3] 3R_12570597_SNP [dm6]	G	A	3.093e^-5	0.74	INTRON Octbeta2R
2R	12667091	2R_12667091_SNP [dm3] 2R_16779586_SNP [dm6]	C	T	3.107e^-5	0.74	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	3.139e^-5	0.74	INTRON CG7888
3L	1853270	3L_1853270_SNP [dm3] 3L_1853270_SNP [dm6]	C	T	3.139e^-5	0.74	INTRON CG13936
2R	12139285	2R_12139285_SNP [dm3] 2R_16251780_SNP [dm6]	C	T	3.159e^-5	0.74	INTRON CngA
3R	9663863	3R_9663863_SNP [dm3] 3R_13838141_SNP [dm6]	G	C	3.187e^-5	0.74	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12491401	2L_12491401_SNP [dm3] 2L_12491401_SNP [dm6]	G	A	3.199e^-5	0.74	INTRON bun
3R	26240869	3R_26240869_SNP [dm3] 3R_30415147_SNP [dm6]	T	C	3.284e^-5	0.74	INTERGENIC
2R	12542676	2R_12542676_SNP [dm3] 2R_16655171_SNP [dm6]	G	A	3.287e^-5	0.74	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
3R	15301280	3R_15301280_SNP [dm3] 3R_19475558_SNP [dm6]	G	C	3.456e^-5	0.74	INTRON Dys	TF binding site mE1_TFBS_inv
2R	16959828	2R_16959828_SNP [dm3] 2R_21072323_SNP [dm6]	C	G	3.456e^-5	0.74	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	10113014	3L_10113014_SNP [dm3] 3L_10119914_SNP [dm6]	C	A	3.489e^-5	0.74	INTRON dpr6
3R	6797474	3R_6797474_SNP [dm3] 3R_10971752_SNP [dm6]	C	T	3.490e^-5	0.74	UPSTREAM CG34114 INTERGENIC
3L	5430378	3L_5430378_SNP [dm3] 3L_5437278_SNP [dm6]	A	T	3.556e^-5	0.74	INTRON CG34391
3R	5575562	3R_5575562_SNP [dm3] 3R_9749840_SNP [dm6]	C	T	3.567e^-5	0.74	SYNONYMOUS_CODING PpD3
2R	17334235	2R_17334235_SNP [dm3] 2R_21446730_SNP [dm6]	T	C	3.686e^-5	0.74	INTRON Sdc
2R	16097859	2R_16097859_SNP [dm3] 2R_20210354_SNP [dm6]	C	T	3.710e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8447007	3L_8447007_SNP [dm3] 3L_8453907_SNP [dm6]	T	C	3.742e^-5	0.74	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4483604	3L_4483604_SNP [dm3] 3L_4483604_SNP [dm6]	T	C	3.831e^-5	0.74	SYNONYMOUS_CODING CG11350
2L	16658646	2L_16658646_SNP [dm3] 2L_16658646_SNP [dm6]	A	G	3.832e^-5	0.74	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17937972	3L_17937972_SNP [dm3] 3L_17944872_SNP [dm6]	G	C	3.843e^-5	0.74	INTRON CG43174
3R	8372968	3R_8372968_SNP [dm3] 3R_12547246_SNP [dm6]	G	T	3.871e^-5	0.74	INTRON Octbeta3R
2R	12542618	2R_12542618_SNP [dm3] 2R_16655113_SNP [dm6]	G	T	4.100e^-5	0.74	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
2R	17158227	2R_17158227_SNP [dm3] 2R_21270722_SNP [dm6]	C	T	4.142e^-5	0.74	INTRON Rgk3
2R	19341961	2R_19341961_SNP [dm3] 2R_23454438_SNP [dm6]	T	C	4.214e^-5	0.74	INTRON CG43795
2L	2120921	2L_2120921_SNP [dm3] 2L_2120921_SNP [dm6]	G	C	4.221e^-5	0.74	INTERGENIC
3L	6840566	3L_6840566_SNP [dm3] 3L_6847466_SNP [dm6]	A	C	4.281e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6735148	3R_6735148_SNP [dm3] 3R_10909426_SNP [dm6]	T	C	4.284e^-5	0.74	INTERGENIC
2R	2619287	2R_2619287_SNP [dm3] 2R_6731782_SNP [dm6]	G	T	4.333e^-5	0.74	INTRON l_2_01289
3L	11126371	3L_11126371_SNP [dm3] 3L_11133271_SNP [dm6]	G	T	4.336e^-5	0.74	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11119051	3L_11119051_SNP [dm3] 3L_11125951_SNP [dm6]	C	T	4.340e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	7097325	3L_7097325_SNP [dm3] 3L_7104225_SNP [dm6]	A	G	4.485e^-5	0.74	INTRON form3
2R	16097956	2R_16097956_SNP [dm3] 2R_20210451_SNP [dm6]	T	C	4.549e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11112363	3L_11112363_SNP [dm3] 3L_11119263_SNP [dm6]	G	A	4.572e^-5	0.74	UTR_5_PRIME fd68A UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	21794341	3R_21794341_SNP [dm3] 3R_25968619_SNP [dm6]	T	G	4.622e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19705604	2R_19705604_SNP [dm3] 2R_23818081_SNP [dm6]	G	A	4.667e^-5	0.74	UTR_5_PRIME CG4797
3L	22850541	3L_22850541_SNP [dm3] 3L_22857441_SNP [dm6]	T	C	4.667e^-5	0.74	INTERGENIC
3L	11124627	3L_11124627_SNP [dm3] 3L_11131527_SNP [dm6]	T	G	4.691e^-5	0.74	DOWNSTREAM CG32074 & 1 other INTRON CG42575
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	4.715e^-5	0.74	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3910610	X_3910610_SNP [dm3] X_4016577_SNP [dm6]	T	C	4.783e^-5	0.74	INTERGENIC
3L	11132689	3L_11132689_SNP [dm3] 3L_11139589_SNP [dm6]	A	C	4.857e^-5	0.74	INTRON CG32082
3L	11132693	3L_11132693_SNP [dm3] 3L_11139593_SNP [dm6]	T	C	4.857e^-5	0.74	INTRON CG32082
3L	11132756	3L_11132756_SNP [dm3] 3L_11139656_SNP [dm6]	C	G	4.857e^-5	0.74	INTRON CG32082
X	19467232	X_19467232_SNP [dm3] X_19573199_SNP [dm6]	G	C	4.871e^-5	0.74	SYNONYMOUS_CODING Tao
2R	16097949	2R_16097949_SNP [dm3] 2R_20210444_SNP [dm6]	G	A	5.055e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	5.103e^-5	0.74	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16959715	2R_16959715_SNP [dm3] 2R_21072210_SNP [dm6]	C	T	5.313e^-5	0.74	DOWNSTREAM CR44704 INTRON CG10527
2R	16959744	2R_16959744_SNP [dm3] 2R_21072239_SNP [dm6]	A	G	5.313e^-5	0.74	DOWNSTREAM CR44704 INTRON CG10527
3R	9663877	3R_9663877_SNP [dm3] 3R_13838155_SNP [dm6]	G	A	5.398e^-5	0.74	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13097194	3L_13097194_SNP [dm3] 3L_13104094_SNP [dm6]	T	C	5.413e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	5.438e^-5	0.74	INTRON Ccn
3R	1100667	3R_1100667_SNP [dm3] 3R_5274945_SNP [dm6]	T	G	5.536e^-5	0.74	DOWNSTREAM CG31538 INTRON mtd
X	18401883	X_18401883_SNP [dm3] X_18507850_SNP [dm6]	G	T	5.594e^-5	0.74	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6039389	3L_6039389_SNP [dm3] 3L_6046289_SNP [dm6]	C	T	5.714e^-5	0.74	INTERGENIC
3L	11120199	3L_11120199_SNP [dm3] 3L_11127099_SNP [dm6]	C	T	5.896e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	12626830	X_12626830_SNP [dm3] X_12732797_SNP [dm6]	T	A	5.904e^-5	0.74	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	11154560	X_11154560_SNP [dm3] X_11260527_SNP [dm6]	A	G	5.925e^-5	0.74	INTRON CG44422
2L	4048579	2L_4048579_SNP [dm3] 2L_4048579_SNP [dm6]	C	T	5.931e^-5	0.74	INTRON ed
2R	9662119	2R_9662119_SNP [dm3] 2R_13774614_SNP [dm6]	A	T	6.081e^-5	0.74	NON_SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9150880	2L_9150880_SNP [dm3] 2L_9150880_SNP [dm6]	A	G	6.085e^-5	0.74	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9151431	2L_9151431_SNP [dm3] 2L_9151431_SNP [dm6]	T	C	6.085e^-5	0.74	SYNONYMOUS_CODING CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10330559	2R_10330559_SNP [dm3] 2R_14443054_SNP [dm6]	A	G	6.095e^-5	0.74	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	12718350	3L_12718350_SNP [dm3] 3L_12725250_SNP [dm6]	A	G	6.190e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7929477	2L_7929477_SNP [dm3] 2L_7929477_SNP [dm6]	A	G	6.209e^-5	0.74	INTRON Snoo
2L	7929480	2L_7929480_MNP [dm3] 2L_7929480_MNP [dm6]	TTG	AAC	6.209e^-5	0.74	INTRON Snoo
2L	7929485	2L_7929485_SNP [dm3] 2L_7929485_SNP [dm6]	A	C	6.209e^-5	0.74	INTRON Snoo
2L	7929495	2L_7929495_SNP [dm3] 2L_7929495_SNP [dm6]	G	T	6.209e^-5	0.74	INTRON Snoo
2L	7929504	2L_7929504_SNP [dm3] 2L_7929504_SNP [dm6]	T	A	6.209e^-5	0.74	INTRON Snoo
2L	7929510	2L_7929510_SNP [dm3] 2L_7929510_SNP [dm6]	C	T	6.209e^-5	0.74	INTRON Snoo
3L	11000608	3L_11000608_SNP [dm3] 3L_11007508_SNP [dm6]	C	T	6.282e^-5	0.74	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27351338	3R_27351338_SNP [dm3] 3R_31525616_SNP [dm6]	T	C	6.339e^-5	0.74	INTERGENIC
3L	11865144	3L_11865144_SNP [dm3] 3L_11872044_SNP [dm6]	G	T	6.362e^-5	0.74	UPSTREAM CG5906 INTRON CG44837
3L	5430371	3L_5430371_SNP [dm3] 3L_5437271_SNP [dm6]	A	G	6.397e^-5	0.74	INTRON CG34391
2R	14462908	2R_14462908_SNP [dm3] 2R_18575403_SNP [dm6]	G	A	6.400e^-5	0.74	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11111607	3L_11111607_SNP [dm3] 3L_11118507_SNP [dm6]	C	T	6.624e^-5	0.74	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11111439	3L_11111439_SNP [dm3] 3L_11118339_SNP [dm6]	G	A	6.717e^-5	0.74	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	6977078	3L_6977078_SNP [dm3] 3L_6983978_SNP [dm6]	C	T	6.753e^-5	0.74	SYNONYMOUS_CODING CG43439 UTR_3_PRIME CG32388	TF binding site mE1_TFBS_sens
X	8172100	X_8172100_SNP [dm3] X_8278067_SNP [dm6]	T	A	6.821e^-5	0.74	UTR_3_PRIME nAChRalpha3
3L	11033624	3L_11033624_SNP [dm3] 3L_11040524_SNP [dm6]	A	T	6.886e^-5	0.74	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
3R	27350675	3R_27350675_SNP [dm3] 3R_31524953_SNP [dm6]	G	A	6.897e^-5	0.74	INTERGENIC
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	7.030e^-5	0.74	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446930	3L_1446930_SNP [dm3] 3L_1446930_SNP [dm6]	C	A	7.046e^-5	0.74	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16959837	2R_16959837_SNP [dm3] 2R_21072332_SNP [dm6]	A	C	7.114e^-5	0.74	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	4252880	3L_4252880_SNP [dm3] 3L_4252880_SNP [dm6]	G	T	7.148e^-5	0.74	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	13277802	3L_13277802_SNP [dm3] 3L_13284702_SNP [dm6]	A	G	7.177e^-5	0.74	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
2L	11809902	2L_11809902_INS [dm3] 2L_11809902_INS [dm6]	A	AATA	7.187e^-5	0.74	UPSTREAM crol DOWNSTREAM CycY INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2R	18923687	2R_18923687_SNP [dm3] 2R_23036164_SNP [dm6]	C	T	7.246e^-5	0.74	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3R	9662965	3R_9662965_DEL [dm3] 3R_13837243_DEL [dm6]	TG	T	7.395e^-5	0.74	DOWNSTREAM CG31495 INTRON Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9664004	3R_9664004_SNP [dm3] 3R_13838282_SNP [dm6]	G	A	7.395e^-5	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2 DOWNSTREAM CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9664249	3R_9664249_DEL [dm3] 3R_13838527_DEL [dm6]	ATATATATAATA...	A	7.395e^-5	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4204564	2L_4204564_SNP [dm3] 2L_4204564_SNP [dm6]	C	G	7.403e^-5	0.74	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3R	5480330	3R_5480330_SNP [dm3] 3R_9654608_SNP [dm6]	G	C	7.404e^-5	0.74	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
3L	12047375	3L_12047375_DEL [dm3] 3L_12054275_DEL [dm6]	AAGTCT	A	7.432e^-5	0.74	INTRON rols	silencer mE1_HDAC_PRE
X	8151420	X_8151420_SNP [dm3] X_8257387_SNP [dm6]	A	T	7.437e^-5	0.74	INTRON CG1632
3R	5574603	3R_5574603_SNP [dm3] 3R_9748881_SNP [dm6]	A	T	7.478e^-5	0.74	INTRON PpD3	TF binding site mE1_TFBS_sens
3L	3844982	3L_3844982_SNP [dm3] 3L_3844982_SNP [dm6]	T	C	7.494e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	18979436	3L_18979436_SNP [dm3] 3L_18986336_SNP [dm6]	T	A	7.509e^-5	0.74	NON_SYNONYMOUS_CODING CG11619 DOWNSTREAM CG14075
3R	10216543	3R_10216543_SNP [dm3] 3R_14390821_SNP [dm6]	T	C	7.526e^-5	0.74	DOWNSTREAM cv-c INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	7.584e^-5	0.74	INTERGENIC
2L	15294170	2L_15294170_SNP [dm3] 2L_15294170_SNP [dm6]	C	T	7.607e^-5	0.74	DOWNSTREAM ms_2_35Ci INTERGENIC
2R	12139146	2R_12139146_SNP [dm3] 2R_16251641_SNP [dm6]	G	T	7.656e^-5	0.74	INTRON CngA
3L	12047513	3L_12047513_SNP [dm3] 3L_12054413_SNP [dm6]	G	T	7.704e^-5	0.74	INTRON rols
2R	12138926	2R_12138926_SNP [dm3] 2R_16251421_SNP [dm6]	C	A	7.725e^-5	0.74	INTRON CngA
2L	9150191	2L_9150191_SNP [dm3] 2L_9150191_SNP [dm6]	G	C	7.795e^-5	0.74	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2567656	3L_2567656_SNP [dm3] 3L_2567656_SNP [dm6]	T	C	7.864e^-5	0.74	SYNONYMOUS_CODING msn
3L	7632926	3L_7632926_SNP [dm3] 3L_7639826_SNP [dm6]	A	T	7.931e^-5	0.74	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3L	13311039	3L_13311039_SNP [dm3] 3L_13317939_SNP [dm6]	A	T	8.008e^-5	0.74	INTERGENIC
2R	14346354	2R_14346354_SNP [dm3] 2R_18458849_SNP [dm6]	G	A	8.036e^-5	0.74	DOWNSTREAM CG30116 INTRON CG30116
2L	10430942	2L_10430942_INS [dm3] 2L_10430942_INS [dm6]	A	AA	8.077e^-5	0.74	UPSTREAM TfIIB & 1 other DOWNSTREAM CG5188 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12077139	3L_12077139_SNP [dm3] 3L_12084039_SNP [dm6]	C	T	8.174e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7146978	3L_7146978_SNP [dm3] 3L_7153878_SNP [dm6]	T	C	8.212e^-5	0.74	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7189272	3L_7189272_SNP [dm3] 3L_7196172_SNP [dm6]	T	G	8.223e^-5	0.74	INTERGENIC
3L	10725604	3L_10725604_SNP [dm3] 3L_10732504_SNP [dm6]	A	G	8.244e^-5	0.74	INTERGENIC
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	8.260e^-5	0.74	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	8.260e^-5	0.74	INTERGENIC
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	8.264e^-5	0.74	INTERGENIC
2R	16959726	2R_16959726_SNP [dm3] 2R_21072221_SNP [dm6]	G	A	8.322e^-5	0.74	DOWNSTREAM CR44704 INTRON CG10527
2R	10612887	2R_10612887_SNP [dm3] 2R_14725382_SNP [dm6]	G	A	8.374e^-5	0.74	INTERGENIC
3R	14890465	3R_14890465_SNP [dm3] 3R_19064743_SNP [dm6]	G	C	8.390e^-5	0.74	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	8.396e^-5	0.74	INTRON Eip75B
3L	3354461	3L_3354461_SNP [dm3] 3L_3354461_SNP [dm6]	G	T	8.422e^-5	0.74	INTRON kst	TF binding site mE1_TFBS_cad
3R	6093084	3R_6093084_SNP [dm3] 3R_10267362_SNP [dm6]	C	T	8.431e^-5	0.74	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14664079	3R_14664079_INS [dm3] 3R_18838357_INS [dm6]	A	ATTTCAACAGC...	8.435e^-5	0.74	INTRON CG18208
3R	22563252	3R_22563252_SNP [dm3] 3R_26737530_SNP [dm6]	C	A	8.527e^-5	0.74	UPSTREAM CG14247 INTERGENIC
3L	3847970	3L_3847970_SNP [dm3] 3L_3847970_SNP [dm6]	G	C	8.615e^-5	0.74	INTRON Awh	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
3L	3850776	3L_3850776_SNP [dm3] 3L_3850776_SNP [dm6]	G	T	8.615e^-5	0.74	INTRON Awh
3L	3084201	3L_3084201_SNP [dm3] 3L_3084201_SNP [dm6]	T	G	8.641e^-5	0.74	INTRON CG11486
3L	3423097	3L_3423097_SNP [dm3] 3L_3423097_SNP [dm6]	T	A	8.724e^-5	0.74	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3844368	3L_3844368_SNP [dm3] 3L_3844368_SNP [dm6]	C	A	8.739e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
X	3963067	X_3963067_SNP [dm3] X_4069034_SNP [dm6]	A	T	8.807e^-5	0.74	INTERGENIC
3L	7836163	3L_7836163_SNP [dm3] 3L_7843063_SNP [dm6]	T	A	8.870e^-5	0.74	INTRON Pdp1	regulatory region REDfly_CRMs
2L	12491175	2L_12491175_SNP [dm3] 2L_12491175_SNP [dm6]	G	A	8.922e^-5	0.74	INTRON bun
2L	13088258	2L_13088258_SNP [dm3] 2L_13088258_SNP [dm6]	T	G	8.953e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	8.973e^-5	0.74	INTERGENIC
2R	16987827	2R_16987827_SNP [dm3] 2R_21100322_SNP [dm6]	T	C	8.973e^-5	0.74	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3R	18129951	3R_18129951_SNP [dm3] 3R_22304229_SNP [dm6]	C	A	8.981e^-5	0.74	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
2R	6801181	2R_6801181_SNP [dm3] 2R_10913676_SNP [dm6]	C	A	9.026e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13132583	2R_13132583_SNP [dm3] 2R_17245078_SNP [dm6]	G	A	9.060e^-5	0.74	DOWNSTREAM CG18469 INTRON mbl
X	3888668	X_3888668_SNP [dm3] X_3994635_SNP [dm6]	C	T	9.079e^-5	0.74	INTERGENIC
3L	11116831	3L_11116831_DEL [dm3] 3L_11123731_DEL [dm6]	TAA	T	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116893	3L_11116893_SNP [dm3] 3L_11123793_SNP [dm6]	G	T	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116950	3L_11116950_SNP [dm3] 3L_11123850_SNP [dm6]	G	A	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116951	3L_11116951_SNP [dm3] 3L_11123851_SNP [dm6]	T	A	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116987	3L_11116987_SNP [dm3] 3L_11123887_SNP [dm6]	C	T	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117289	3L_11117289_SNP [dm3] 3L_11124189_SNP [dm6]	C	T	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117298	3L_11117298_SNP [dm3] 3L_11124198_SNP [dm6]	C	A	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117299	3L_11117299_SNP [dm3] 3L_11124199_SNP [dm6]	C	A	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117304	3L_11117304_SNP [dm3] 3L_11124204_SNP [dm6]	C	T	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117308	3L_11117308_SNP [dm3] 3L_11124208_SNP [dm6]	G	A	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117314	3L_11117314_DEL [dm3] 3L_11124214_DEL [dm6]	CACCC	C	9.095e^-5	0.74	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117336	3L_11117336_SNP [dm3] 3L_11124236_SNP [dm6]	T	C	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117358	3L_11117358_INS [dm3] 3L_11124258_INS [dm6]	T	TACCAT	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117417	3L_11117417_SNP [dm3] 3L_11124317_SNP [dm6]	A	T	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117580	3L_11117580_SNP [dm3] 3L_11124480_SNP [dm6]	G	A	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117599	3L_11117599_DEL [dm3] 3L_11124499_DEL [dm6]	ATA	A	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117606	3L_11117606_DEL [dm3] 3L_11124506_DEL [dm6]	ACTTCCGCT	TA	9.095e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	9.124e^-5	0.74	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16097895	2R_16097895_SNP [dm3] 2R_20210390_SNP [dm6]	T	C	9.263e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5480312	3R_5480312_SNP [dm3] 3R_9654590_SNP [dm6]	G	A	9.303e^-5	0.74	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
3L	12047520	3L_12047520_SNP [dm3] 3L_12054420_SNP [dm6]	C	T	9.328e^-5	0.74	INTRON rols
2L	15065290	2L_15065290_SNP [dm3] 2L_15065290_SNP [dm6]	A	T	9.350e^-5	0.74	SYNONYMOUS_CODING vig INTRON vas
3L	12047516	3L_12047516_SNP [dm3] 3L_12054416_SNP [dm6]	A	G	9.364e^-5	0.74	INTRON rols
X	18866809	X_18866809_INS [dm3] X_18972776_INS [dm6]	T	TT	9.376e^-5	0.74	INTRON CG43759
2L	19952490	2L_19952490_SNP [dm3] 2L_19952490_SNP [dm6]	G	A	9.408e^-5	0.74	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19952494	2L_19952494_SNP [dm3] 2L_19952494_SNP [dm6]	G	T	9.408e^-5	0.74	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19372741	2R_19372741_SNP [dm3] 2R_23485218_SNP [dm6]	G	A	9.501e^-5	0.74	SYNONYMOUS_CODING CG43795
3R	10347290	3R_10347290_SNP [dm3] 3R_14521568_SNP [dm6]	A	G	9.529e^-5	0.74	INTRON Pde6 & 1 other
3L	16958378	3L_16958378_INS [dm3] 3L_16965278_INS [dm6]	G	GA	9.541e^-5	0.74	INTRON Nc73EF
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	9.572e^-5	0.74	INTRON axo
X	4884063	X_4884063_SNP [dm3] X_4990030_SNP [dm6]	C	T	9.576e^-5	0.74	INTRON CR44833
3R	9971140	3R_9971140_SNP [dm3] 3R_14145418_SNP [dm6]	G	T	9.761e^-5	0.74	INTERGENIC
3R	22562985	3R_22562985_SNP [dm3] 3R_26737263_SNP [dm6]	C	A	9.782e^-5	0.74	UPSTREAM CG6403 & 1 other INTERGENIC
X	3888666	X_3888666_SNP [dm3] X_3994633_SNP [dm6]	A	C	9.897e^-5	0.74	INTERGENIC
3L	11119878	3L_11119878_SNP [dm3] 3L_11126778_SNP [dm6]	T	C	9.937e^-5	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21794436	3R_21794436_SNP [dm3] 3R_25968714_SNP [dm6]	T	G	1.004e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12491095	2L_12491095_SNP [dm3] 2L_12491095_SNP [dm6]	A	G	1.017e^-4	0.74	INTRON bun
2L	2120915	2L_2120915_SNP [dm3] 2L_2120915_SNP [dm6]	G	T	1.021e^-4	0.74	INTERGENIC
3L	11115555	3L_11115555_SNP [dm3] 3L_11122455_SNP [dm6]	G	T	1.021e^-4	0.74	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	1.030e^-4	0.74	INTRON Tgi
3L	21252913	3L_21252913_SNP [dm3] 3L_21259813_SNP [dm6]	A	G	1.041e^-4	0.74	INTRON Eip78C
2R	16959936	2R_16959936_SNP [dm3] 2R_21072431_SNP [dm6]	A	C	1.057e^-4	0.74	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	1.078e^-4	0.74	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20101503	2R_20101503_SNP [dm3] 2R_24213980_SNP [dm6]	A	G	1.079e^-4	0.74	UTR_3_PRIME CG30419
3L	20189356	3L_20189356_SNP [dm3] 3L_20196256_SNP [dm6]	G	C	1.082e^-4	0.74	INTRON CG42674
3L	13989584	3L_13989584_SNP [dm3] 3L_13996484_SNP [dm6]	C	T	1.088e^-4	0.74	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
2R	17758604	2R_17758604_SNP [dm3] 2R_21871099_SNP [dm6]	G	T	1.094e^-4	0.74	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2R	17327037	2R_17327037_SNP [dm3] 2R_21439532_SNP [dm6]	G	C	1.100e^-4	0.74	INTRON Sdc
2R	16428109	2R_16428109_SNP [dm3] 2R_20540604_SNP [dm6]	A	G	1.103e^-4	0.74	UPSTREAM CG13428 DOWNSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1529250	2L_1529250_SNP [dm3] 2L_1529250_SNP [dm6]	T	C	1.104e^-4	0.74	INTERGENIC
X	19360273	X_19360273_SNP [dm3] X_19466240_SNP [dm6]	G	C	1.105e^-4	0.74	INTRON kek5	TF binding site mE1_TFBS_cad
2L	5885453	2L_5885453_SNP [dm3] 2L_5885453_SNP [dm6]	A	G	1.109e^-4	0.74	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3R	5487637	3R_5487637_SNP [dm3] 3R_9661915_SNP [dm6]	C	T	1.116e^-4	0.74	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6954714	3L_6954714_SNP [dm3] 3L_6961614_SNP [dm6]	T	A	1.118e^-4	0.74	INTRON sgl
3R	14622504	3R_14622504_SNP [dm3] 3R_18796782_SNP [dm6]	T	G	1.120e^-4	0.74	INTERGENIC
3L	6977095	3L_6977095_SNP [dm3] 3L_6983995_SNP [dm6]	G	T	1.120e^-4	0.74	NON_SYNONYMOUS_CODING CG43439 UTR_3_PRIME CG32388	TF binding site mE1_TFBS_sens
2L	9152648	2L_9152648_SNP [dm3] 2L_9152648_SNP [dm6]	C	T	1.129e^-4	0.74	INTRON CG32982
2L	9152701	2L_9152701_SNP [dm3] 2L_9152701_SNP [dm6]	G	T	1.129e^-4	0.74	INTRON CG32982
3L	7262355	3L_7262355_SNP [dm3] 3L_7269255_SNP [dm6]	T	C	1.131e^-4	0.74	INTRON unc-13-4A
3L	11637152	3L_11637152_SNP [dm3] 3L_11644052_SNP [dm6]	A	G	1.141e^-4	0.74	SYNONYMOUS_CODING CG6071
2R	16847912	2R_16847912_SNP [dm3] 2R_20960407_SNP [dm6]	T	C	1.149e^-4	0.74	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	1.162e^-4	0.74	INTRON axo
3L	16562966	3L_16562966_SNP [dm3] 3L_16569866_SNP [dm6]	A	G	1.164e^-4	0.74	INTRON Mipp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16563022	3L_16563022_SNP [dm3] 3L_16569922_SNP [dm6]	G	C	1.164e^-4	0.74	INTRON Mipp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3001122	3L_3001122_SNP [dm3] 3L_3001122_SNP [dm6]	A	C	1.169e^-4	0.74	UPSTREAM FMRFaR INTERGENIC
3L	11110294	3L_11110294_SNP [dm3] 3L_11117194_SNP [dm6]	C	G	1.178e^-4	0.74	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11110309	3L_11110309_SNP [dm3] 3L_11117209_SNP [dm6]	T	A	1.178e^-4	0.74	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12035719	X_12035719_SNP [dm3] X_12141686_SNP [dm6]	T	C	1.179e^-4	0.74	INTRON Ten-a
3R	14890468	3R_14890468_SNP [dm3] 3R_19064746_SNP [dm6]	G	C	1.181e^-4	0.74	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3L	13575591	3L_13575591_SNP [dm3] 3L_13582491_SNP [dm6]	G	T	1.183e^-4	0.74	INTRON bru-3
3R	9663983	3R_9663983_SNP [dm3] 3R_13838261_SNP [dm6]	T	A	1.189e^-4	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2 DOWNSTREAM CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9664388	3R_9664388_SNP [dm3] 3R_13838666_SNP [dm6]	T	C	1.189e^-4	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
3L	11110275	3L_11110275_DEL [dm3] 3L_11117175_DEL [dm6]	AT	A	1.197e^-4	0.74	SPLICE_SITE_REGION fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2355431	3L_2355431_SNP [dm3] 3L_2355431_SNP [dm6]	T	G	1.198e^-4	0.74	INTERGENIC
3L	5688748	3L_5688748_INS [dm3] 3L_5695648_INS [dm6]	A	ACACAAA	1.201e^-4	0.74	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_chinmo
2R	11675561	2R_11675561_SNP [dm3] 2R_15788056_SNP [dm6]	T	C	1.216e^-4	0.74	INTRON Zasp52
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	1.217e^-4	0.74	INTRON sda
3L	12174978	3L_12174978_SNP [dm3] 3L_12181878_SNP [dm6]	T	C	1.220e^-4	0.74	SYNONYMOUS_CODING CAH2
2R	17514204	2R_17514204_SNP [dm3] 2R_21626699_SNP [dm6]	T	A	1.222e^-4	0.74	SYNONYMOUS_CODING mahj
3R	6093082	3R_6093082_SNP [dm3] 3R_10267360_SNP [dm6]	C	T	1.227e^-4	0.74	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26300322	3R_26300322_SNP [dm3] 3R_30474600_SNP [dm6]	C	T	1.229e^-4	0.74	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7640506	3L_7640506_SNP [dm3] 3L_7647406_SNP [dm6]	G	A	1.230e^-4	0.74	INTERGENIC
2R	18903339	2R_18903339_SNP [dm3] 2R_23015816_SNP [dm6]	C	T	1.234e^-4	0.74	INTRON twi & 1 other
3R	19138516	3R_19138516_SNP [dm3] 3R_23312794_SNP [dm6]	G	T	1.235e^-4	0.74	INTRON pnt
3L	4659154	3L_4659154_SNP [dm3] 3L_4659154_SNP [dm6]	T	G	1.235e^-4	0.74	INTRON axo
3L	4659156	3L_4659156_SNP [dm3] 3L_4659156_SNP [dm6]	C	A	1.235e^-4	0.74	INTRON axo
3L	2991929	3L_2991929_SNP [dm3] 3L_2991929_SNP [dm6]	A	G	1.239e^-4	0.74	INTERGENIC
3R	18440203	3R_18440203_SNP [dm3] 3R_22614481_SNP [dm6]	C	T	1.241e^-4	0.74	SPLICE_SITE_REGION EF-G2 UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_sens
X	6399261	X_6399261_SNP [dm3] X_6505228_SNP [dm6]	C	G	1.244e^-4	0.74	INTRON CG42340
3L	13891971	3L_13891971_SNP [dm3] 3L_13898871_SNP [dm6]	C	A	1.253e^-4	0.74	INTRON dysc
3L	4815483	3L_4815483_SNP [dm3] 3L_4815483_SNP [dm6]	G	T	1.260e^-4	0.74	INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11117703	3L_11117703_SNP [dm3] 3L_11124603_SNP [dm6]	C	T	1.261e^-4	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1355368	X_1355368_SNP [dm3] X_1461335_SNP [dm6]	T	A	1.269e^-4	0.74	NON_SYNONYMOUS_CODING CG14787 UPSTREAM CG14786 DOWNSTREAM Ns3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4325677	3R_4325677_DEL [dm3] 3R_8499955_DEL [dm6]	TA	T	1.281e^-4	0.74	INTERGENIC
2L	10431102	2L_10431102_SNP [dm3] 2L_10431102_SNP [dm6]	T	A	1.291e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	1.291e^-4	0.74	INTERGENIC
3L	7189764	3L_7189764_SNP [dm3] 3L_7196664_SNP [dm6]	C	T	1.292e^-4	0.74	INTERGENIC
2L	9139436	2L_9139436_SNP [dm3] 2L_9139436_SNP [dm6]	C	T	1.296e^-4	0.74	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3L	2953574	3L_2953574_DEL [dm3] 3L_2953574_DEL [dm6]	TT	T	1.303e^-4	0.74	DOWNSTREAM Shab INTRON Shab
2L	11023315	2L_11023315_SNP [dm3] 2L_11023315_SNP [dm6]	A	G	1.305e^-4	0.74	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	4822361	3L_4822361_SNP [dm3] 3L_4822361_SNP [dm6]	G	A	1.305e^-4	0.74	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16959766	2R_16959766_SNP [dm3] 2R_21072261_SNP [dm6]	G	T	1.309e^-4	0.74	DOWNSTREAM CR44704 INTRON CG10527
3L	4659265	3L_4659265_SNP [dm3] 3L_4659265_SNP [dm6]	C	A	1.311e^-4	0.74	INTRON axo
3L	6840529	3L_6840529_SNP [dm3] 3L_6847429_SNP [dm6]	G	A	1.315e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	1.317e^-4	0.74	INTRON form3
2L	10629538	2L_10629538_SNP [dm3] 2L_10629538_SNP [dm6]	C	G	1.323e^-4	0.74	NON_SYNONYMOUS_CODING CG7329
3L	22848499	3L_22848499_SNP [dm3] 3L_22855399_SNP [dm6]	T	G	1.325e^-4	0.74	NON_SYNONYMOUS_CODING CG32459 DOWNSTREAM CR43426
2L	10431099	2L_10431099_SNP [dm3] 2L_10431099_SNP [dm6]	A	C	1.340e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6752674	3L_6752674_SNP [dm3] 3L_6759574_SNP [dm6]	T	A	1.346e^-4	0.74	INTRON CG32392
3L	13289655	3L_13289655_SNP [dm3] 3L_13296555_SNP [dm6]	T	A	1.346e^-4	0.74	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289669	3L_13289669_DEL [dm3] 3L_13296569_DEL [dm6]	TTTGTGAATTTATGAACCA...	T	1.346e^-4	0.74	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289690	3L_13289690_DEL [dm3] 3L_13296590_DEL [dm6]	TAGAGTTCTGTAAATTTGGA...	T	1.346e^-4	0.74	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27047870	3R_27047870_SNP [dm3] 3R_31222148_SNP [dm6]	C	T	1.350e^-4	0.74	INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	1.352e^-4	0.74	INTRON bun
3R	13720741	3R_13720741_SNP [dm3] 3R_17895019_SNP [dm6]	A	G	1.367e^-4	0.74	INTRON Rim
3R	8342688	3R_8342688_SNP [dm3] 3R_12516966_SNP [dm6]	A	C	1.370e^-4	0.74	NON_SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12491293	2L_12491293_SNP [dm3] 2L_12491293_SNP [dm6]	C	A	1.376e^-4	0.74	INTRON bun
2R	12112885	2R_12112885_SNP [dm3] 2R_16225380_SNP [dm6]	G	C	1.376e^-4	0.74	UPSTREAM CG15706 INTRON CG15706
3L	4251840	3L_4251840_SNP [dm3] 3L_4251840_SNP [dm6]	C	T	1.377e^-4	0.74	SPLICE_SITE_REGION ago UTR_5_PRIME ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	4252442	3L_4252442_SNP [dm3] 3L_4252442_SNP [dm6]	T	A	1.377e^-4	0.74	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	4252550	3L_4252550_SNP [dm3] 3L_4252550_SNP [dm6]	A	G	1.377e^-4	0.74	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	5884872	2L_5884872_SNP [dm3] 2L_5884872_SNP [dm6]	A	G	1.384e^-4	0.74	UPSTREAM CG43185 & 1 other DOWNSTREAM CG44574 INTERGENIC
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	1.391e^-4	0.74	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	1.391e^-4	0.74	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7145386	3R_7145386_SNP [dm3] 3R_11319664_SNP [dm6]	G	T	1.393e^-4	0.74	INTERGENIC
X	14025577	X_14025577_DEL [dm3] X_14131544_DEL [dm6]	AAACAAAAATGGCGGCGCTT...	A	1.393e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14762881	X_14762881_SNP [dm3] X_14868848_SNP [dm6]	T	C	1.393e^-4	0.74	INTRON Flo2 & 1 other
3L	7640294	3L_7640294_SNP [dm3] 3L_7647194_SNP [dm6]	C	A	1.396e^-4	0.74	INTERGENIC
2L	10431111	2L_10431111_INS [dm3] 2L_10431111_INS [dm6]	A	AA	1.397e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4251871	3L_4251871_SNP [dm3] 3L_4251871_SNP [dm6]	G	A	1.398e^-4	0.74	INTRON ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	4961263	3L_4961263_SNP [dm3] 3L_4961263_SNP [dm6]	C	T	1.413e^-4	0.74	INTRON Con
2L	12157565	2L_12157565_SNP [dm3] 2L_12157565_SNP [dm6]	T	G	1.417e^-4	0.74	INTRON CG31760
3L	4822315	3L_4822315_SNP [dm3] 3L_4822315_SNP [dm6]	A	G	1.420e^-4	0.74	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4253415	3L_4253415_SNP [dm3] 3L_4253415_SNP [dm6]	G	A	1.422e^-4	0.74	INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	4253455	3L_4253455_SNP [dm3] 3L_4253455_SNP [dm6]	T	C	1.422e^-4	0.74	INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	6752669	3L_6752669_SNP [dm3] 3L_6759569_SNP [dm6]	T	C	1.431e^-4	0.74	INTRON CG32392
3L	6752671	3L_6752671_SNP [dm3] 3L_6759571_SNP [dm6]	C	T	1.431e^-4	0.74	INTRON CG32392
3L	6752673	3L_6752673_SNP [dm3] 3L_6759573_SNP [dm6]	A	G	1.431e^-4	0.74	INTRON CG32392
2R	5622879	2R_5622879_SNP [dm3] 2R_9735374_SNP [dm6]	G	T	1.441e^-4	0.74	INTRON sqa
3L	2156840	3L_2156840_SNP [dm3] 3L_2156840_SNP [dm6]	G	A	1.444e^-4	0.74	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3R	18476218	3R_18476218_SNP [dm3] 3R_22650496_SNP [dm6]	T	A	1.459e^-4	0.74	INTRON CG45058
3L	13312273	3L_13312273_SNP [dm3] 3L_13319173_SNP [dm6]	A	G	1.460e^-4	0.74	INTERGENIC
3L	13312295	3L_13312295_SNP [dm3] 3L_13319195_SNP [dm6]	T	A	1.460e^-4	0.74	INTERGENIC
3L	17585858	3L_17585858_DEL [dm3] 3L_17592758_DEL [dm6]	TGTGCTT	T	1.463e^-4	0.74	INTRON Eip74EF
3L	17585866	3L_17585866_INS [dm3] 3L_17592766_INS [dm6]	A	AGCACATAT	1.463e^-4	0.74	INTRON Eip74EF
X	17720007	X_17720007_SNP [dm3] X_17825974_SNP [dm6]	A	G	1.466e^-4	0.74	INTRON Socs16D
X	17720012	X_17720012_SNP [dm3] X_17825979_SNP [dm6]	A	T	1.466e^-4	0.74	INTRON Socs16D
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	1.481e^-4	0.74	INTERGENIC
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	1.483e^-4	0.74	INTRON axo
2L	10431019	2L_10431019_SNP [dm3] 2L_10431019_SNP [dm6]	A	G	1.486e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431037	2L_10431037_SNP [dm3] 2L_10431037_SNP [dm6]	A	G	1.486e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431047	2L_10431047_SNP [dm3] 2L_10431047_SNP [dm6]	T	A	1.486e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431069	2L_10431069_SNP [dm3] 2L_10431069_SNP [dm6]	G	A	1.486e^-4	0.74	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13284730	2L_13284730_SNP [dm3] 2L_13284730_SNP [dm6]	G	T	1.487e^-4	0.74	SYNONYMOUS_CODING Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085	TF binding site mE1_TFBS_cad
3R	8394942	3R_8394942_SNP [dm3] 3R_12569220_SNP [dm6]	G	C	1.492e^-4	0.74	INTRON Octbeta2R
3R	5589452	3R_5589452_SNP [dm3] 3R_9763730_SNP [dm6]	G	A	1.492e^-4	0.74	UTR_5_PRIME CG8478 UPSTREAM CG8478 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	1.493e^-4	0.74	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	7910917	X_7910917_SNP [dm3] X_8016884_SNP [dm6]	G	A	1.495e^-4	0.74	INTRON Tbh
3L	17883800	3L_17883800_SNP [dm3] 3L_17890700_SNP [dm6]	T	C	1.500e^-4	0.74	SYNONYMOUS_CODING CG7402
2L	7929487	2L_7929487_SNP [dm3] 2L_7929487_SNP [dm6]	C	G	1.514e^-4	0.74	INTRON Snoo
3R	15322278	3R_15322278_SNP [dm3] 3R_19496556_SNP [dm6]	G	C	1.528e^-4	0.74	INTRON Dys
2R	5693033	2R_5693033_SNP [dm3] 2R_9805528_SNP [dm6]	C	T	1.528e^-4	0.74	INTRON CG1688
3R	15945573	3R_15945573_SNP [dm3] 3R_20119851_SNP [dm6]	T	C	1.529e^-4	0.74	INTERGENIC
3R	5154856	3R_5154856_SNP [dm3] 3R_9329134_SNP [dm6]	T	C	1.537e^-4	0.74	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	5536448	X_5536448_SNP [dm3] X_5642415_SNP [dm6]	G	C	1.539e^-4	0.74	INTRON CG42492
3R	15734793	3R_15734793_INS [dm3] 3R_19909071_INS [dm6]	A	AGCTA	1.543e^-4	0.74	DOWNSTREAM CR45047 & 1 other INTRON RhoGAP92B EXON CR45048
2R	12641624	2R_12641624_SNP [dm3] 2R_16754119_SNP [dm6]	A	G	1.546e^-4	0.74	SYNONYMOUS_CODING unc-104 UPSTREAM CG34189 & 1 other
X	5964280	X_5964280_SNP [dm3] X_6070247_SNP [dm6]	G	T	1.558e^-4	0.74	DOWNSTREAM CG5928 INTRON Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20249665	2R_20249665_SNP [dm3] 2R_24362142_SNP [dm6]	C	T	1.566e^-4	0.74	INTRON bs & 1 other
3R	10220041	3R_10220041_SNP [dm3] 3R_14394319_SNP [dm6]	A	C	1.566e^-4	0.74	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad
X	3360052	X_3360052_SNP [dm3] X_3466019_SNP [dm6]	T	A	1.568e^-4	0.74	UTR_3_PRIME CG12206 INTRON CR44999
3L	4815581	3L_4815581_SNP [dm3] 3L_4815581_SNP [dm6]	T	C	1.570e^-4	0.74	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	16982432	3L_16982432_SNP [dm3] 3L_16989332_SNP [dm6]	T	A	1.572e^-4	0.74	INTRON Exn
3L	16982523	3L_16982523_SNP [dm3] 3L_16989423_SNP [dm6]	T	A	1.572e^-4	0.74	INTRON Exn
3L	16982576	3L_16982576_SNP [dm3] 3L_16989476_SNP [dm6]	T	A	1.572e^-4	0.74	INTRON Exn
3L	16982578	3L_16982578_SNP [dm3] 3L_16989478_SNP [dm6]	A	T	1.572e^-4	0.74	INTRON Exn
3L	21857864	3L_21857864_SNP [dm3] 3L_21864764_SNP [dm6]	G	C	1.573e^-4	0.74	INTRON mub
X	13642764	X_13642764_INS [dm3] X_13748731_INS [dm6]	T	TATTACGTTATT...	1.576e^-4	0.74	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13642836	X_13642836_SNP [dm3] X_13748803_SNP [dm6]	T	A	1.576e^-4	0.74	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9151139	2L_9151139_INS [dm3] 2L_9151139_INS [dm6]	A	AA	1.576e^-4	0.74	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7929447	2L_7929447_INS [dm3] 2L_7929447_INS [dm6]	T	TTATGCT	1.576e^-4	0.74	INTRON Snoo
3R	27297491	3R_27297491_SNP [dm3] 3R_31471769_SNP [dm6]	C	T	1.582e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27297492	3R_27297492_SNP [dm3] 3R_31471770_SNP [dm6]	A	C	1.582e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12065792	3L_12065792_SNP [dm3] 3L_12072692_SNP [dm6]	T	G	1.584e^-4	0.74	INTRON Sema-5c	TF binding site mE1_TFBS_HSA
3L	11883868	3L_11883868_SNP [dm3] 3L_11890768_SNP [dm6]	G	T	1.585e^-4	0.74	INTRON CG44837
2R	17869107	2R_17869107_SNP [dm3] 2R_21981602_SNP [dm6]	A	C	1.601e^-4	0.746	DOWNSTREAM Gr58a INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27348403	3R_27348403_SNP [dm3] 3R_31522681_SNP [dm6]	A	T	1.610e^-4	0.748	EXON CR45573
3L	11115534	3L_11115534_SNP [dm3] 3L_11122434_SNP [dm6]	C	T	1.623e^-4	0.749	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5080125	X_5080125_SNP [dm3] X_5186092_SNP [dm6]	C	A	1.626e^-4	0.749	INTRON rg & 1 other
3L	21857908	3L_21857908_SNP [dm3] 3L_21864808_SNP [dm6]	C	A	1.628e^-4	0.749	INTRON mub
3L	8341207	3L_8341207_SNP [dm3] 3L_8348107_SNP [dm6]	C	T	1.628e^-4	0.749	INTRON GAPcenA	TF binding site mE1_TFBS_cad
2R	9660096	2R_9660096_SNP [dm3] 2R_13772591_SNP [dm6]	A	C	1.640e^-4	0.75	INTRON Cpr50Ca
3R	9663271	3R_9663271_SNP [dm3] 3R_13837549_SNP [dm6]	C	G	1.640e^-4	0.75	SYNONYMOUS_CODING Nsf2 DOWNSTREAM CG31495	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6731922	3R_6731922_SNP [dm3] 3R_10906200_SNP [dm6]	G	A	1.653e^-4	0.75	INTERGENIC	insulator Insulator_Class_II.mE01
2R	13357309	2R_13357309_SNP [dm3] 2R_17469804_SNP [dm6]	A	G	1.683e^-4	0.75	UTR_5_PRIME qkr54B UPSTREAM Tes INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	14025506	X_14025506_DEL [dm3] X_14131473_DEL [dm6]	TGCGTCCT	T	1.689e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16985009	2R_16985009_DEL [dm3] 2R_21097504_DEL [dm6]	TT	T	1.693e^-4	0.75	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3360040	X_3360040_SNP [dm3] X_3466007_SNP [dm6]	C	A	1.699e^-4	0.75	UTR_3_PRIME CG12206 INTRON CR44999
3L	11108145	3L_11108145_SNP [dm3] 3L_11115045_SNP [dm6]	A	T	1.704e^-4	0.75	STOP_LOST fd68A UTR_3_PRIME fd68A
2L	9101135	2L_9101135_SNP [dm3] 2L_9101135_SNP [dm6]	A	G	1.708e^-4	0.75	INTERGENIC
3R	21459308	3R_21459308_SNP [dm3] 3R_25633586_SNP [dm6]	T	A	1.710e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11118089	3L_11118089_SNP [dm3] 3L_11124989_SNP [dm6]	T	C	1.715e^-4	0.75	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	962708	3R_962708_SNP [dm3] 3R_5136986_SNP [dm6]	T	C	1.716e^-4	0.75	DOWNSTREAM CG12589 INTERGENIC
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	1.720e^-4	0.75	INTRON CG7470
2L	9147394	2L_9147394_SNP [dm3] 2L_9147394_SNP [dm6]	C	T	1.722e^-4	0.75	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13989580	3L_13989580_SNP [dm3] 3L_13996480_SNP [dm6]	C	T	1.727e^-4	0.75	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
X	13641759	X_13641759_SNP [dm3] X_13747726_SNP [dm6]	T	A	1.736e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27189997	3R_27189997_SNP [dm3] 3R_31364275_SNP [dm6]	C	A	1.741e^-4	0.75	INTRON CG34347
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	1.742e^-4	0.75	UPSTREAM CG2955 INTERGENIC
X	20502227	X_20502227_SNP [dm3] X_20631200_SNP [dm6]	A	C	1.751e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	17975464	3L_17975464_SNP [dm3] 3L_17982364_SNP [dm6]	G	A	1.752e^-4	0.75	INTRON Eip75B
2R	14545808	2R_14545808_SNP [dm3] 2R_18658303_SNP [dm6]	G	A	1.754e^-4	0.75	UPSTREAM SP2637 DOWNSTREAM Gint3 & 1 other INTERGENIC
X	12353224	X_12353224_SNP [dm3] X_12459191_SNP [dm6]	A	G	1.756e^-4	0.75	DOWNSTREAM Rab40 INTERGENIC
X	12353225	X_12353225_SNP [dm3] X_12459192_SNP [dm6]	G	A	1.756e^-4	0.75	DOWNSTREAM Rab40 INTERGENIC
2R	16919465	2R_16919465_SNP [dm3] 2R_21031960_SNP [dm6]	A	T	1.769e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10612922	2R_10612922_SNP [dm3] 2R_14725417_SNP [dm6]	G	A	1.781e^-4	0.75	INTERGENIC
2L	14434394	2L_14434394_SNP [dm3] 2L_14434394_SNP [dm6]	C	A	1.782e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	2575587	X_2575587_SNP [dm3] X_2681554_SNP [dm6]	T	A	1.784e^-4	0.75	SYNONYMOUS_CODING HLH3B DOWNSTREAM CG2652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11126770	3L_11126770_SNP [dm3] 3L_11133670_SNP [dm6]	C	T	1.785e^-4	0.75	SYNONYMOUS_CODING CG42575	TF binding site mE1_TFBS_cad
2R	15669877	2R_15669877_SNP [dm3] 2R_19782372_SNP [dm6]	A	G	1.787e^-4	0.75	INTERGENIC
2R	15669942	2R_15669942_SNP [dm3] 2R_19782437_SNP [dm6]	C	T	1.787e^-4	0.75	INTERGENIC
2L	14264589	2L_14264589_INS [dm3] 2L_14264589_INS [dm6]	T	ATC	1.802e^-4	0.75	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	6906764	2L_6906764_SNP [dm3] 2L_6906764_SNP [dm6]	A	C	1.805e^-4	0.75	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
3R	15281389	3R_15281389_SNP [dm3] 3R_19455667_SNP [dm6]	G	C	1.808e^-4	0.75	INTRON CG31221
X	18925280	X_18925280_SNP [dm3] X_19031247_SNP [dm6]	A	T	1.822e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2570284	3L_2570284_SNP [dm3] 3L_2570284_SNP [dm6]	A	G	1.824e^-4	0.75	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15461981	2L_15461981_SNP [dm3] 2L_15461981_SNP [dm6]	G	A	1.829e^-4	0.75	INTERGENIC
3R	27085595	3R_27085595_SNP [dm3] 3R_31259873_SNP [dm6]	T	C	1.832e^-4	0.75	SYNONYMOUS_CODING CG3669 UPSTREAM CG18672
2R	12342554	2R_12342554_SNP [dm3] 2R_16455049_SNP [dm6]	T	C	1.833e^-4	0.75	INTERGENIC
2L	15462211	2L_15462211_SNP [dm3] 2L_15462211_SNP [dm6]	C	G	1.843e^-4	0.75	INTERGENIC
2R	10206233	2R_10206233_SNP [dm3] 2R_14318728_SNP [dm6]	T	G	1.844e^-4	0.75	INTRON Shroom
3R	5591636	3R_5591636_SNP [dm3] 3R_9765914_SNP [dm6]	G	T	1.845e^-4	0.75	UTR_3_PRIME CG8478 DOWNSTREAM MED6
3R	5591638	3R_5591638_SNP [dm3] 3R_9765916_SNP [dm6]	T	C	1.845e^-4	0.75	UTR_3_PRIME CG8478 DOWNSTREAM MED6
2R	18986556	2R_18986556_SNP [dm3] 2R_23099033_SNP [dm6]	A	C	1.847e^-4	0.75	INTERGENIC
2L	10492189	2L_10492189_SNP [dm3] 2L_10492189_SNP [dm6]	T	A	1.854e^-4	0.75	UTR_3_PRIME Myo31DF UPSTREAM CG13144	TF binding site mE1_TFBS_cad
2L	2306130	2L_2306130_SNP [dm3] 2L_2306130_SNP [dm6]	A	C	1.854e^-4	0.75	INTERGENIC
3L	12978841	3L_12978841_SNP [dm3] 3L_12985741_SNP [dm6]	C	T	1.854e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	27047968	3R_27047968_INS [dm3] 3R_31222246_INS [dm6]	T	TGTGGACTTTT...	1.857e^-4	0.75	INTRON CG12054	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	1.884e^-4	0.75	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7609685	2L_7609685_SNP [dm3] 2L_7609685_SNP [dm6]	G	A	1.892e^-4	0.75	INTRON CG6739
3L	6008880	3L_6008880_SNP [dm3] 3L_6015780_SNP [dm6]	G	A	1.897e^-4	0.75	INTRON PVRAP
3L	7097305	3L_7097305_SNP [dm3] 3L_7104205_SNP [dm6]	T	G	1.903e^-4	0.75	INTRON form3
3L	7403883	3L_7403883_SNP [dm3] 3L_7410783_SNP [dm6]	A	T	1.903e^-4	0.75	INTERGENIC
2R	19896168	2R_19896168_INS [dm3] 2R_24008645_INS [dm6]	A	ACATA	1.904e^-4	0.75	INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	4846339	2L_4846339_SNP [dm3] 2L_4846339_SNP [dm6]	T	G	1.909e^-4	0.75	UTR_5_PRIME mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
3L	10286096	3L_10286096_SNP [dm3] 3L_10292996_SNP [dm6]	G	A	1.909e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11154592	X_11154592_SNP [dm3] X_11260559_SNP [dm6]	T	A	1.911e^-4	0.75	INTRON CG44422
X	21324963	X_21324963_DEL [dm3] X_21453936_DEL [dm6]	TT	T	1.919e^-4	0.75	INTRON CG42343
3R	6735382	3R_6735382_SNP [dm3] 3R_10909660_SNP [dm6]	C	A	1.919e^-4	0.75	INTERGENIC
X	12353236	X_12353236_SNP [dm3] X_12459203_SNP [dm6]	C	T	1.928e^-4	0.75	DOWNSTREAM Rab40 INTERGENIC
3L	2047980	3L_2047980_SNP [dm3] 3L_2047980_SNP [dm6]	T	C	1.934e^-4	0.75	NON_SYNONYMOUS_CODING sls
2R	16567608	2R_16567608_SNP [dm3] 2R_20680103_SNP [dm6]	T	C	1.934e^-4	0.75	INTERGENIC
2L	9147760	2L_9147760_SNP [dm3] 2L_9147760_SNP [dm6]	T	C	1.937e^-4	0.75	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	11381672	2R_11381672_SNP [dm3] 2R_15494167_SNP [dm6]	G	C	1.940e^-4	0.75	INTRON CG12964
X	18926909	X_18926909_SNP [dm3] X_19032876_SNP [dm6]	A	T	1.947e^-4	0.75	INTERGENIC
2L	12369426	2L_12369426_SNP [dm3] 2L_12369426_SNP [dm6]	A	C	1.951e^-4	0.75	UPSTREAM bru-2 INTRON bru-2
2L	1901190	2L_1901190_SNP [dm3] 2L_1901190_SNP [dm6]	G	T	1.953e^-4	0.75	INTRON CG7337
3L	10813863	3L_10813863_SNP [dm3] 3L_10820763_SNP [dm6]	C	T	1.959e^-4	0.75	INTERGENIC
2L	9147836	2L_9147836_SNP [dm3] 2L_9147836_SNP [dm6]	A	G	1.971e^-4	0.75	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	11120786	3L_11120786_SNP [dm3] 3L_11127686_SNP [dm6]	T	C	1.975e^-4	0.75	INTRON CG42575
3L	11120788	3L_11120788_SNP [dm3] 3L_11127688_SNP [dm6]	G	C	1.975e^-4	0.75	INTRON CG42575
3L	11124727	3L_11124727_SNP [dm3] 3L_11131627_SNP [dm6]	T	A	1.976e^-4	0.75	DOWNSTREAM CG32074 & 1 other INTRON CG42575
3L	11120053	3L_11120053_SNP [dm3] 3L_11126953_SNP [dm6]	T	G	1.976e^-4	0.75	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	11539917	3R_11539917_DEL [dm3] 3R_15714195_DEL [dm6]	GCGTTGAGTTG...	G	1.979e^-4	0.75	INTERGENIC
3L	12094551	3L_12094551_SNP [dm3] 3L_12101451_SNP [dm6]	A	T	1.989e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	5586228	3R_5586228_SNP [dm3] 3R_9760506_SNP [dm6]	G	T	1.997e^-4	0.75	DOWNSTREAM Snap24 INTRON CG8417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19735340	3R_19735340_SNP [dm3] 3R_23909618_SNP [dm6]	T	C	2.003e^-4	0.75	INTRON sba
2L	5885421	2L_5885421_SNP [dm3] 2L_5885421_SNP [dm6]	T	C	2.005e^-4	0.75	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3L	11110336	3L_11110336_SNP [dm3] 3L_11117236_SNP [dm6]	T	A	2.008e^-4	0.75	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5236746	3R_5236746_SNP [dm3] 3R_9411024_SNP [dm6]	T	C	2.018e^-4	0.75	SYNONYMOUS_CODING Task7 UPSTREAM betaTub85D
3R	6735381	3R_6735381_SNP [dm3] 3R_10909659_SNP [dm6]	T	C	2.019e^-4	0.75	INTERGENIC
2L	921873	2L_921873_SNP [dm3] 2L_921873_SNP [dm6]	G	A	2.019e^-4	0.75	UPSTREAM CG4341 INTERGENIC
3R	11594546	3R_11594546_SNP [dm3] 3R_15768824_SNP [dm6]	T	A	2.033e^-4	0.75	INTERGENIC
3L	21843348	3L_21843348_SNP [dm3] 3L_21850248_SNP [dm6]	G	C	2.038e^-4	0.75	INTRON mub
3L	5676010	3L_5676010_SNP [dm3] 3L_5682910_SNP [dm6]	T	C	2.048e^-4	0.75	INTRON sif
X	11086594	X_11086594_SNP [dm3] X_11192561_SNP [dm6]	A	G	2.057e^-4	0.75	UPSTREAM CR44765 INTERGENIC
X	8151446	X_8151446_SNP [dm3] X_8257413_SNP [dm6]	A	T	2.060e^-4	0.75	INTRON CG1632
X	8151489	X_8151489_SNP [dm3] X_8257456_SNP [dm6]	T	A	2.060e^-4	0.75	INTRON CG1632
X	8151490	X_8151490_INS [dm3] X_8257457_INS [dm6]	T	TC	2.060e^-4	0.75	INTRON CG1632
X	8151495	X_8151495_SNP [dm3] X_8257462_SNP [dm6]	A	C	2.060e^-4	0.75	INTRON CG1632
3R	10605145	3R_10605145_SNP [dm3] 3R_14779423_SNP [dm6]	A	G	2.061e^-4	0.75	INTRON jvl	TF binding site mE1_TFBS_HSA
2R	14462617	2R_14462617_DEL [dm3] 2R_18575112_DEL [dm6]	TTGATAA	T	2.062e^-4	0.75	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12035718	X_12035718_SNP [dm3] X_12141685_SNP [dm6]	T	G	2.065e^-4	0.75	INTRON Ten-a
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	2.068e^-4	0.75	INTRON Gfrl
3R	13655634	3R_13655634_SNP [dm3] 3R_17829912_SNP [dm6]	T	C	2.069e^-4	0.75	INTRON tinc
3R	5114847	3R_5114847_SNP [dm3] 3R_9289125_SNP [dm6]	T	A	2.071e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	11109054	3L_11109054_SNP [dm3] 3L_11115954_SNP [dm6]	G	A	2.075e^-4	0.75	SYNONYMOUS_CODING fd68A
2R	17759794	2R_17759794_SNP [dm3] 2R_21872289_SNP [dm6]	A	T	2.081e^-4	0.75	START_GAINED Fili UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17785255	3R_17785255_SNP [dm3] 3R_21959533_SNP [dm6]	A	G	2.085e^-4	0.75	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	2.086e^-4	0.75	INTERGENIC
3R	16162971	3R_16162971_SNP [dm3] 3R_20337249_SNP [dm6]	A	T	2.087e^-4	0.75	INTERGENIC
3L	11330511	3L_11330511_SNP [dm3] 3L_11337411_SNP [dm6]	A	T	2.088e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_sens
3R	6732940	3R_6732940_SNP [dm3] 3R_10907218_SNP [dm6]	C	A	2.089e^-4	0.75	INTERGENIC
3R	6734973	3R_6734973_SNP [dm3] 3R_10909251_SNP [dm6]	G	A	2.089e^-4	0.75	INTERGENIC
X	13642393	X_13642393_SNP [dm3] X_13748360_SNP [dm6]	C	G	2.099e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13642394	X_13642394_SNP [dm3] X_13748361_SNP [dm6]	A	G	2.099e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14264591	2L_14264591_SNP [dm3] 2L_14264591_SNP [dm6]	A	C	2.105e^-4	0.75	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	4815868	3L_4815868_SNP [dm3] 3L_4815868_SNP [dm6]	T	G	2.113e^-4	0.75	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21936038	3L_21936038_SNP [dm3] 3L_21942938_SNP [dm6]	A	G	2.115e^-4	0.75	INTRON CG14562	TF binding site mE1_TFBS_sens
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	2.127e^-4	0.75	INTERGENIC
X	8151421	X_8151421_SNP [dm3] X_8257388_SNP [dm6]	A	T	2.134e^-4	0.75	INTRON CG1632
2L	15462119	2L_15462119_SNP [dm3] 2L_15462119_SNP [dm6]	G	A	2.142e^-4	0.75	INTERGENIC
3R	14374322	3R_14374322_SNP [dm3] 3R_18548600_SNP [dm6]	G	C	2.148e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18071987	3L_18071987_SNP [dm3] 3L_18078887_SNP [dm6]	T	A	2.149e^-4	0.75	DOWNSTREAM CR45392 INTERGENIC
3L	8183480	3L_8183480_INS [dm3] 3L_8190380_INS [dm6]	G	GACGGCG	2.153e^-4	0.75	UTR_3_PRIME Atg18a UPSTREAM MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5682369	2R_5682369_SNP [dm3] 2R_9794864_SNP [dm6]	C	T	2.157e^-4	0.75	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other	TF binding site mE1_TFBS_cad
X	13642707	X_13642707_SNP [dm3] X_13748674_SNP [dm6]	G	A	2.170e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13642731	X_13642731_DEL [dm3] X_13748698_DEL [dm6]	CT	A	2.170e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4895812	3L_4895812_SNP [dm3] 3L_4895812_SNP [dm6]	A	G	2.176e^-4	0.75	DOWNSTREAM CG17150 INTERGENIC
3L	11114364	3L_11114364_SNP [dm3] 3L_11121264_SNP [dm6]	A	G	2.177e^-4	0.75	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17869106	2R_17869106_SNP [dm3] 2R_21981601_SNP [dm6]	A	G	2.181e^-4	0.75	DOWNSTREAM Gr58a INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3845091	3L_3845091_SNP [dm3] 3L_3845091_SNP [dm6]	G	T	2.181e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9220005	3R_9220005_SNP [dm3] 3R_13394283_SNP [dm6]	T	C	2.198e^-4	0.75	INTRON CCHa2
3R	15322229	3R_15322229_SNP [dm3] 3R_19496507_SNP [dm6]	T	C	2.206e^-4	0.75	INTRON Dys
X	13641839	X_13641839_SNP [dm3] X_13747806_SNP [dm6]	C	T	2.216e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12065794	3L_12065794_SNP [dm3] 3L_12072694_SNP [dm6]	T	A	2.218e^-4	0.75	INTRON Sema-5c	TF binding site mE1_TFBS_HSA
2R	5695295	2R_5695295_SNP [dm3] 2R_9807790_SNP [dm6]	G	A	2.225e^-4	0.75	UPSTREAM CG1688 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14545603	2R_14545603_SNP [dm3] 2R_18658098_SNP [dm6]	A	G	2.225e^-4	0.75	UTR_5_PRIME SP2637 DOWNSTREAM Gint3 & 1 other
2R	14545607	2R_14545607_SNP [dm3] 2R_18658102_SNP [dm6]	C	G	2.225e^-4	0.75	UTR_5_PRIME SP2637 DOWNSTREAM Gint3 & 1 other
2R	17750901	2R_17750901_SNP [dm3] 2R_21863396_SNP [dm6]	C	G	2.230e^-4	0.75	INTERGENIC
3L	11132888	3L_11132888_SNP [dm3] 3L_11139788_SNP [dm6]	G	A	2.230e^-4	0.75	INTRON CG32082
3L	11132894	3L_11132894_SNP [dm3] 3L_11139794_SNP [dm6]	A	G	2.230e^-4	0.75	INTRON CG32082
3L	11114244	3L_11114244_SNP [dm3] 3L_11121144_SNP [dm6]	T	C	2.232e^-4	0.75	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11110380	3L_11110380_SNP [dm3] 3L_11117280_SNP [dm6]	G	A	2.235e^-4	0.75	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	4798022	X_4798022_SNP [dm3] X_4903989_SNP [dm6]	C	G	2.243e^-4	0.75	SYNONYMOUS_CODING CG42594
3L	5675775	3L_5675775_SNP [dm3] 3L_5682675_SNP [dm6]	A	T	2.250e^-4	0.75	INTRON sif
3L	4255305	3L_4255305_SNP [dm3] 3L_4255305_SNP [dm6]	C	T	2.251e^-4	0.75	UPSTREAM ago DOWNSTREAM CG15011 INTRON CG1265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17856941	2R_17856941_SNP [dm3] 2R_21969436_SNP [dm6]	A	T	2.251e^-4	0.75	INTRON ppk9
3R	17833194	3R_17833194_SNP [dm3] 3R_22007472_SNP [dm6]	G	A	2.252e^-4	0.75	UTR_3_PRIME Eip93F DOWNSTREAM Eip93F
2L	15168184	2L_15168184_SNP [dm3] 2L_15168184_SNP [dm6]	T	G	2.253e^-4	0.75	INTRON CG4168
3L	4255323	3L_4255323_SNP [dm3] 3L_4255323_SNP [dm6]	A	G	2.256e^-4	0.75	DOWNSTREAM CG15011 INTRON CG1265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14189800	2R_14189800_SNP [dm3] 2R_18302295_SNP [dm6]	C	A	2.259e^-4	0.75	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	14189801	2R_14189801_SNP [dm3] 2R_18302296_SNP [dm6]	C	A	2.259e^-4	0.75	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
X	12035659	X_12035659_SNP [dm3] X_12141626_SNP [dm6]	A	G	2.260e^-4	0.75	INTRON Ten-a
X	12035700	X_12035700_SNP [dm3] X_12141667_SNP [dm6]	C	T	2.260e^-4	0.75	INTRON Ten-a
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	2.264e^-4	0.75	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	2.264e^-4	0.75	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	2.264e^-4	0.75	INTRON CG7470
3L	13310987	3L_13310987_SNP [dm3] 3L_13317887_SNP [dm6]	G	A	2.281e^-4	0.75	INTERGENIC
3R	4270893	3R_4270893_SNP [dm3] 3R_8445171_SNP [dm6]	G	A	2.288e^-4	0.75	INTRON CG45263
X	8151488	X_8151488_SNP [dm3] X_8257455_SNP [dm6]	G	T	2.293e^-4	0.75	INTRON CG1632
X	5076975	X_5076975_SNP [dm3] X_5182942_SNP [dm6]	T	A	2.297e^-4	0.75	UPSTREAM CG5062 INTRON rg & 1 other
X	19360274	X_19360274_SNP [dm3] X_19466241_SNP [dm6]	C	A	2.300e^-4	0.75	INTRON kek5	TF binding site mE1_TFBS_cad
3R	9761951	3R_9761951_SNP [dm3] 3R_13936229_SNP [dm6]	G	C	2.323e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22082351	3L_22082351_SNP [dm3] 3L_22089251_SNP [dm6]	A	C	2.324e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22082352	3L_22082352_SNP [dm3] 3L_22089252_SNP [dm6]	C	A	2.324e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22082509	3L_22082509_SNP [dm3] 3L_22089409_SNP [dm6]	G	A	2.324e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	3879711	3L_3879711_SNP [dm3] 3L_3879711_SNP [dm6]	C	T	2.352e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	11118668	3L_11118668_DEL [dm3] 3L_11125568_DEL [dm6]	AA	A	2.352e^-4	0.75	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	14434437	2L_14434437_SNP [dm3] 2L_14434437_SNP [dm6]	G	C	2.359e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	18866949	X_18866949_SNP [dm3] X_18972916_SNP [dm6]	C	T	2.360e^-4	0.75	INTRON CG43759
3L	3001127	3L_3001127_SNP [dm3] 3L_3001127_SNP [dm6]	G	T	2.368e^-4	0.75	UPSTREAM FMRFaR INTERGENIC
3L	11132880	3L_11132880_SNP [dm3] 3L_11139780_SNP [dm6]	T	C	2.368e^-4	0.75	INTRON CG32082
3L	1446859	3L_1446859_SNP [dm3] 3L_1446859_SNP [dm6]	A	G	2.375e^-4	0.75	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6680348	2L_6680348_SNP [dm3] 2L_6680348_SNP [dm6]	G	A	2.382e^-4	0.75	SPLICE_SITE_REGION Nhe3 SYNONYMOUS_CODING Nhe3
2L	19886177	2L_19886177_SNP [dm3] 2L_19886177_SNP [dm6]	C	G	2.384e^-4	0.75	INTRON sick
2L	19886189	2L_19886189_SNP [dm3] 2L_19886189_SNP [dm6]	A	G	2.384e^-4	0.75	INTRON sick
2R	1842537	2R_1842537_SNP [dm3] 2R_5955032_SNP [dm6]	T	C	2.392e^-4	0.75	INTERGENIC
3L	11119866	3L_11119866_SNP [dm3] 3L_11126766_SNP [dm6]	G	T	2.397e^-4	0.75	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7189769	3L_7189769_SNP [dm3] 3L_7196669_SNP [dm6]	A	G	2.402e^-4	0.75	INTERGENIC
3L	15576531	3L_15576531_SNP [dm3] 3L_15583431_SNP [dm6]	A	G	2.403e^-4	0.75	UPSTREAM CG12304 DOWNSTREAM CG12301 INTERGENIC
X	13343970	X_13343970_SNP [dm3] X_13449937_SNP [dm6]	A	C	2.405e^-4	0.75	INTRON Neto
X	13343979	X_13343979_SNP [dm3] X_13449946_SNP [dm6]	G	T	2.405e^-4	0.75	INTRON Neto
3R	9664375	3R_9664375_SNP [dm3] 3R_13838653_SNP [dm6]	G	T	2.416e^-4	0.75	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
2R	16960034	2R_16960034_SNP [dm3] 2R_21072529_SNP [dm6]	T	G	2.418e^-4	0.75	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	18722426	3L_18722426_SNP [dm3] 3L_18729326_SNP [dm6]	A	G	2.423e^-4	0.75	INTERGENIC
2L	4048625	2L_4048625_DEL [dm3] 2L_4048625_DEL [dm6]	TT	T	2.434e^-4	0.75	INTRON ed
X	2372364	X_2372364_SNP [dm3] X_2478331_SNP [dm6]	C	T	2.436e^-4	0.75	UTR_3_PRIME trol INTRON trol
2L	8213584	2L_8213584_INS [dm3] 2L_8213584_INS [dm6]	A	ATATATATGTACAAA...	2.437e^-4	0.75	UPSTREAM CG8372 & 1 other INTRON CG8360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26409709	3R_26409709_SNP [dm3] 3R_30583987_SNP [dm6]	T	A	2.446e^-4	0.75	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	27344561	3R_27344561_SNP [dm3] 3R_31518839_SNP [dm6]	T	A	2.454e^-4	0.75	INTERGENIC
3R	27344564	3R_27344564_SNP [dm3] 3R_31518842_SNP [dm6]	T	G	2.454e^-4	0.75	INTERGENIC
3L	1585022	3L_1585022_SNP [dm3] 3L_1585022_SNP [dm6]	C	G	2.457e^-4	0.75	INTRON CG13917
3L	6273685	3L_6273685_SNP [dm3] 3L_6280585_SNP [dm6]	T	A	2.461e^-4	0.75	INTERGENIC
2L	6680440	2L_6680440_SNP [dm3] 2L_6680440_SNP [dm6]	T	G	2.467e^-4	0.75	NON_SYNONYMOUS_CODING Nhe3
2L	20902697	2L_20902697_INS [dm3] 2L_20902697_INS [dm6]	G	GTTG	2.485e^-4	0.75	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17044088	2R_17044088_SNP [dm3] 2R_21156583_SNP [dm6]	C	G	2.488e^-4	0.75	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
3L	10813815	3L_10813815_SNP [dm3] 3L_10820715_SNP [dm6]	T	A	2.489e^-4	0.75	INTERGENIC
X	12002001	X_12002001_SNP [dm3] X_12107968_SNP [dm6]	T	A	2.494e^-4	0.75	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	11155556	2R_11155556_SNP [dm3] 2R_15268051_SNP [dm6]	T	C	2.499e^-4	0.75	INTRON Trpm
2R	20446945	2R_20446945_SNP [dm3] 2R_24559422_SNP [dm6]	G	A	2.503e^-4	0.75	UTR_3_PRIME Nurf-38 DOWNSTREAM ITP INTRON Nurf-38
3L	2961353	3L_2961353_SNP [dm3] 3L_2961353_SNP [dm6]	T	C	2.521e^-4	0.75	UPSTREAM Or63a & 1 other INTERGENIC
X	13215975	X_13215975_SNP [dm3] X_13321942_SNP [dm6]	C	A	2.522e^-4	0.75	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	2.535e^-4	0.75	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1935113	2L_1935113_SNP [dm3] 2L_1935113_SNP [dm6]	C	T	2.538e^-4	0.75	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
2L	14434438	2L_14434438_SNP [dm3] 2L_14434438_SNP [dm6]	C	T	2.542e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	7093540	3L_7093540_SNP [dm3] 3L_7100440_SNP [dm6]	G	A	2.543e^-4	0.75	INTRON form3
2R	18962374	2R_18962374_SNP [dm3] 2R_23074851_SNP [dm6]	T	C	2.547e^-4	0.75	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11463375	3R_11463375_SNP [dm3] 3R_15637653_SNP [dm6]	A	T	2.549e^-4	0.75	NON_SYNONYMOUS_CODING CG43336	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10401125	2R_10401125_SNP [dm3] 2R_14513620_SNP [dm6]	A	C	2.560e^-4	0.75	UPSTREAM CG30197 INTRON Cpr51A
2R	10401150	2R_10401150_SNP [dm3] 2R_14513645_SNP [dm6]	A	G	2.560e^-4	0.75	UPSTREAM CG30197 INTRON Cpr51A
2R	10401167	2R_10401167_SNP [dm3] 2R_14513662_SNP [dm6]	A	T	2.560e^-4	0.75	UPSTREAM CG30197 INTRON Cpr51A
2L	5466268	2L_5466268_SNP [dm3] 2L_5466268_SNP [dm6]	C	T	2.565e^-4	0.75	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11117249	3L_11117249_SNP [dm3] 3L_11124149_SNP [dm6]	T	C	2.573e^-4	0.75	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1015421	3L_1015421_INS [dm3] 3L_1015421_INS [dm6]	A	AAG	2.580e^-4	0.75	INTRON trio
3L	1015424	3L_1015424_SNP [dm3] 3L_1015424_SNP [dm6]	C	A	2.580e^-4	0.75	INTRON trio
X	12329952	X_12329952_SNP [dm3] X_12435919_SNP [dm6]	C	T	2.582e^-4	0.75	INTRON Pkcdelta
3L	7632929	3L_7632929_SNP [dm3] 3L_7639829_SNP [dm6]	A	C	2.584e^-4	0.75	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	2.589e^-4	0.75	INTRON form3
3R	13900611	3R_13900611_SNP [dm3] 3R_18074889_SNP [dm6]	C	G	2.590e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12175077	3L_12175077_SNP [dm3] 3L_12181977_SNP [dm6]	A	G	2.594e^-4	0.75	SYNONYMOUS_CODING CAH2
2R	5684044	2R_5684044_SNP [dm3] 2R_9796539_SNP [dm6]	T	C	2.597e^-4	0.75	INTRON CG1688 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14301332	X_14301332_SNP [dm3] X_14407299_SNP [dm6]	T	A	2.605e^-4	0.75	INTRON dpr8
X	4895218	X_4895218_DEL [dm3] X_5001185_DEL [dm6]	ATATAGAAATA...	A	2.621e^-4	0.75	INTRON CR44833	regulatory region REDfly_CRMs
3R	7151483	3R_7151483_SNP [dm3] 3R_11325761_SNP [dm6]	C	A	2.628e^-4	0.75	INTERGENIC
3L	3738489	3L_3738489_SNP [dm3] 3L_3738489_SNP [dm6]	G	A	2.629e^-4	0.75	INTRON CG32264
X	8151496	X_8151496_SNP [dm3] X_8257463_SNP [dm6]	T	G	2.631e^-4	0.75	INTRON CG1632
2L	9235611	2L_9235611_SNP [dm3] 2L_9235611_SNP [dm6]	C	G	2.632e^-4	0.75	DOWNSTREAM tRNA:CR31885 INTRON tai
2R	19919915	2R_19919915_SNP [dm3] 2R_24032392_SNP [dm6]	G	C	2.634e^-4	0.75	SYNONYMOUS_CODING Chi UPSTREAM CG30172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	15577571	3L_15577571_SNP [dm3] 3L_15584471_SNP [dm6]	A	G	2.637e^-4	0.75	DOWNSTREAM CG7656 INTRON CG12304
3L	21936208	3L_21936208_SNP [dm3] 3L_21943108_SNP [dm6]	A	C	2.638e^-4	0.75	INTRON CG14562
3R	26409791	3R_26409791_SNP [dm3] 3R_30584069_SNP [dm6]	C	T	2.646e^-4	0.75	UTR_3_PRIME CG9717 UPSTREAM Rpt6R	TF binding site mE1_TFBS_cad
2R	16428143	2R_16428143_SNP [dm3] 2R_20540638_SNP [dm6]	G	A	2.650e^-4	0.75	UPSTREAM CG13428 DOWNSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14434264	2L_14434264_SNP [dm3] 2L_14434264_SNP [dm6]	A	T	2.664e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9148154	2L_9148154_SNP [dm3] 2L_9148154_SNP [dm6]	G	A	2.667e^-4	0.75	INTRON CG32982	TF binding site mE1_TFBS_cad
2L	9819740	2L_9819740_SNP [dm3] 2L_9819740_SNP [dm6]	A	G	2.668e^-4	0.75	INTRON nAChRalpha6
3R	15301134	3R_15301134_SNP [dm3] 3R_19475412_SNP [dm6]	C	T	2.670e^-4	0.75	INTRON Dys	TF binding site mE1_TFBS_inv
3L	3001009	3L_3001009_SNP [dm3] 3L_3001009_SNP [dm6]	C	T	2.672e^-4	0.75	UPSTREAM FMRFaR INTERGENIC
X	11220535	X_11220535_SNP [dm3] X_11326502_SNP [dm6]	A	G	2.674e^-4	0.75	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
X	6696816	X_6696816_SNP [dm3] X_6802783_SNP [dm6]	C	G	2.674e^-4	0.75	UPSTREAM pod1 INTRON C3G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl
3R	6733905	3R_6733905_SNP [dm3] 3R_10908183_SNP [dm6]	C	A	2.677e^-4	0.75	INTERGENIC
3R	21793963	3R_21793963_SNP [dm3] 3R_25968241_SNP [dm6]	T	A	2.684e^-4	0.75	INTERGENIC
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	2.685e^-4	0.75	INTRON Gycbeta100B
3L	4252946	3L_4252946_DEL [dm3] 3L_4252946_DEL [dm6]	TA	T	2.687e^-4	0.75	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	26073203	3R_26073203_SNP [dm3] 3R_30247481_SNP [dm6]	G	A	2.687e^-4	0.75	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	10162651	3R_10162651_SNP [dm3] 3R_14336929_SNP [dm6]	C	A	2.698e^-4	0.75	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	10162653	3R_10162653_SNP [dm3] 3R_14336931_SNP [dm6]	A	C	2.698e^-4	0.75	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	13828457	3R_13828457_SNP [dm3] 3R_18002735_SNP [dm6]	A	G	2.701e^-4	0.75	INTRON cpo
3L	11033603	3L_11033603_SNP [dm3] 3L_11040503_SNP [dm6]	C	T	2.703e^-4	0.75	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
X	13643961	X_13643961_SNP [dm3] X_13749928_SNP [dm6]	T	A	2.706e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl
X	15614937	X_15614937_SNP [dm3] X_15720904_SNP [dm6]	G	A	2.709e^-4	0.75	SYNONYMOUS_CODING CG8184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	19467142	X_19467142_SNP [dm3] X_19573109_SNP [dm6]	G	A	2.710e^-4	0.75	SYNONYMOUS_CODING Tao
3L	17878736	3L_17878736_SNP [dm3] 3L_17885636_SNP [dm6]	A	G	2.720e^-4	0.75	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC	transposable element FlyBase
3L	11111387	3L_11111387_SNP [dm3] 3L_11118287_SNP [dm6]	G	A	2.730e^-4	0.75	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	5675546	3L_5675546_SNP [dm3] 3L_5682446_SNP [dm6]	C	A	2.733e^-4	0.75	INTRON sif
3L	13566900	3L_13566900_SNP [dm3] 3L_13573800_SNP [dm6]	A	G	2.749e^-4	0.75	INTRON bru-3
2L	2068780	2L_2068780_SNP [dm3] 2L_2068780_SNP [dm6]	A	G	2.750e^-4	0.75	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2649838	2L_2649838_SNP [dm3] 2L_2649838_SNP [dm6]	T	C	2.755e^-4	0.75	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
2L	13088331	2L_13088331_SNP [dm3] 2L_13088331_SNP [dm6]	G	C	2.758e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	13088363	2L_13088363_INS [dm3] 2L_13088363_INS [dm6]	G	GC	2.758e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	4822102	3L_4822102_SNP [dm3] 3L_4822102_SNP [dm6]	G	A	2.760e^-4	0.75	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad
3L	4822481	3L_4822481_SNP [dm3] 3L_4822481_SNP [dm6]	C	T	2.760e^-4	0.75	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4822829	3L_4822829_SNP [dm3] 3L_4822829_SNP [dm6]	A	G	2.760e^-4	0.75	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11735870	3L_11735870_SNP [dm3] 3L_11742770_SNP [dm6]	G	A	2.778e^-4	0.75	INTRON CG6024
3R	16162926	3R_16162926_SNP [dm3] 3R_20337204_SNP [dm6]	T	C	2.779e^-4	0.75	INTERGENIC
X	8151437	X_8151437_SNP [dm3] X_8257404_SNP [dm6]	A	G	2.781e^-4	0.75	INTRON CG1632
3L	11112188	3L_11112188_SNP [dm3] 3L_11119088_SNP [dm6]	G	A	2.792e^-4	0.75	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	2.795e^-4	0.75	INTRON Eip75B
3R	18436899	3R_18436899_SNP [dm3] 3R_22611177_SNP [dm6]	A	G	2.797e^-4	0.75	SYNONYMOUS_CODING CG31156 DOWNSTREAM CG13843
3R	6656802	3R_6656802_SNP [dm3] 3R_10831080_SNP [dm6]	A	T	2.798e^-4	0.75	INTRON Cad86C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	14303032	X_14303032_SNP [dm3] X_14408999_SNP [dm6]	A	T	2.801e^-4	0.75	INTRON dpr8
3R	23613233	3R_23613233_SNP [dm3] 3R_27787511_SNP [dm6]	C	A	2.802e^-4	0.75	INTRON CG34353
3L	12990756	3L_12990756_SNP [dm3] 3L_12997656_SNP [dm6]	A	G	2.802e^-4	0.75	DOWNSTREAM CG11262 INTERGENIC
3L	7632924	3L_7632924_SNP [dm3] 3L_7639824_SNP [dm6]	A	T	2.803e^-4	0.75	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3L	17948312	3L_17948312_SNP [dm3] 3L_17955212_SNP [dm6]	C	T	2.804e^-4	0.75	SPLICE_SITE_REGION Eip75B INTRON Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4028664	3R_4028664_SNP [dm3] 3R_8202942_SNP [dm6]	C	T	2.810e^-4	0.75	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9986432	3R_9986432_SNP [dm3] 3R_14160710_SNP [dm6]	C	G	2.820e^-4	0.75	UPSTREAM CG31327 INTERGENIC
3L	21903181	3L_21903181_SNP [dm3] 3L_21910081_SNP [dm6]	T	C	2.825e^-4	0.75	INTRON mub
X	6504081	X_6504081_SNP [dm3] X_6610048_SNP [dm6]	C	A	2.825e^-4	0.75	INTRON pigs
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	2.826e^-4	0.75	INTRON CG1688
3L	3850230	3L_3850230_SNP [dm3] 3L_3850230_SNP [dm6]	A	G	2.837e^-4	0.75	INTRON Awh
3L	3850930	3L_3850930_SNP [dm3] 3L_3850930_SNP [dm6]	T	G	2.837e^-4	0.75	INTRON Awh
3L	3854900	3L_3854900_SNP [dm3] 3L_3854900_SNP [dm6]	C	T	2.837e^-4	0.75	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3855340	3L_3855340_INS [dm3] 3L_3855340_INS [dm6]	T	TG	2.837e^-4	0.75	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3855343	3L_3855343_SNP [dm3] 3L_3855343_SNP [dm6]	T	C	2.837e^-4	0.75	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7147280	3L_7147280_SNP [dm3] 3L_7154180_SNP [dm6]	A	T	2.837e^-4	0.75	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4659122	3L_4659122_INS [dm3] 3L_4659122_INS [dm6]	A	TTG	2.851e^-4	0.75	INTRON axo
2R	9660003	2R_9660003_DEL [dm3] 2R_13772498_DEL [dm6]	AA	A	2.854e^-4	0.75	INTRON Cpr50Ca
3R	6317421	3R_6317421_SNP [dm3] 3R_10491699_SNP [dm6]	C	T	2.855e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_Kr
X	13343960	X_13343960_SNP [dm3] X_13449927_SNP [dm6]	A	T	2.859e^-4	0.75	INTRON Neto
X	13343971	X_13343971_SNP [dm3] X_13449938_SNP [dm6]	A	G	2.859e^-4	0.75	INTRON Neto
X	13828016	X_13828016_SNP [dm3] X_13933983_SNP [dm6]	C	T	2.878e^-4	0.75	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15294043	2L_15294043_SNP [dm3] 2L_15294043_SNP [dm6]	C	A	2.883e^-4	0.75	UTR_3_PRIME ms_2_35Ci DOWNSTREAM ms_2_35Ci
3L	11050609	3L_11050609_SNP [dm3] 3L_11057509_SNP [dm6]	A	T	2.884e^-4	0.75	INTRON CG7888
2L	9105225	2L_9105225_SNP [dm3] 2L_9105225_SNP [dm6]	A	G	2.884e^-4	0.75	INTERGENIC
3L	22523438	3L_22523438_SNP [dm3] 3L_22530338_SNP [dm6]	C	G	2.885e^-4	0.75	INTERGENIC
3L	22523439	3L_22523439_SNP [dm3] 3L_22530339_SNP [dm6]	G	C	2.885e^-4	0.75	INTERGENIC
3L	16982359	3L_16982359_SNP [dm3] 3L_16989259_SNP [dm6]	G	A	2.886e^-4	0.75	INTRON Exn
3L	11116915	3L_11116915_SNP [dm3] 3L_11123815_SNP [dm6]	T	C	2.899e^-4	0.75	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16387344	3L_16387344_SNP [dm3] 3L_16394244_SNP [dm6]	G	C	2.901e^-4	0.75	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26833941	3R_26833941_SNP [dm3] 3R_31008219_SNP [dm6]	G	T	2.903e^-4	0.75	INTRON 5-HT7
3R	26022045	3R_26022045_SNP [dm3] 3R_30196323_SNP [dm6]	C	T	2.918e^-4	0.75	UPSTREAM CG15531 DOWNSTREAM CG9743 INTERGENIC
2L	632687	2L_632687_SNP [dm3] 2L_632687_SNP [dm6]	A	G	2.941e^-4	0.75	INTERGENIC
3L	15590037	3L_15590037_SNP [dm3] 3L_15596937_SNP [dm6]	C	T	2.942e^-4	0.75	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	15590038	3L_15590038_SNP [dm3] 3L_15596938_SNP [dm6]	A	T	2.942e^-4	0.75	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	13488915	3L_13488915_SNP [dm3] 3L_13495815_SNP [dm6]	T	A	2.954e^-4	0.75	SYNONYMOUS_CODING Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18923108	X_18923108_SNP [dm3] X_19029075_SNP [dm6]	G	C	2.956e^-4	0.75	DOWNSTREAM CG43759 INTERGENIC
X	18923119	X_18923119_INS [dm3] X_19029086_INS [dm6]	A	ACAATA	2.956e^-4	0.75	DOWNSTREAM CG43759 INTERGENIC
3R	11776525	3R_11776525_SNP [dm3] 3R_15950803_SNP [dm6]	G	T	2.958e^-4	0.75	NON_SYNONYMOUS_CODING CG31088 INTRON Sap47
2L	4048792	2L_4048792_SNP [dm3] 2L_4048792_SNP [dm6]	T	C	2.964e^-4	0.75	INTRON ed
3R	5587145	3R_5587145_SNP [dm3] 3R_9761423_SNP [dm6]	T	A	2.966e^-4	0.75	UTR_3_PRIME Snap24 DOWNSTREAM CG8417
X	8151441	X_8151441_SNP [dm3] X_8257408_SNP [dm6]	T	C	2.975e^-4	0.75	INTRON CG1632
3R	6315006	3R_6315006_SNP [dm3] 3R_10489284_SNP [dm6]	T	A	2.976e^-4	0.75	EXON CR45576
2L	11809999	2L_11809999_SNP [dm3] 2L_11809999_SNP [dm6]	T	G	2.976e^-4	0.75	UPSTREAM crol DOWNSTREAM CycY INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	11498667	3R_11498667_SNP [dm3] 3R_15672945_SNP [dm6]	A	G	2.980e^-4	0.75	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
3L	9656672	3L_9656672_SNP [dm3] 3L_9663572_SNP [dm6]	T	C	2.986e^-4	0.75	INTRON fry	TF binding site mE1_TFBS_cad
3L	15774079	3L_15774079_SNP [dm3] 3L_15780979_SNP [dm6]	G	C	2.987e^-4	0.75	INTERGENIC
3R	27678878	3R_27678878_SNP [dm3] 3R_31853156_SNP [dm6]	A	C	2.990e^-4	0.75	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	1568431	X_1568431_SNP [dm3] X_1674398_SNP [dm6]	T	C	2.990e^-4	0.75	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	3738493	3L_3738493_SNP [dm3] 3L_3738493_SNP [dm6]	T	C	2.997e^-4	0.75	INTRON CG32264
3L	7093542	3L_7093542_SNP [dm3] 3L_7100442_SNP [dm6]	A	C	3.007e^-4	0.75	INTRON form3
2R	10703326	2R_10703326_SNP [dm3] 2R_14815821_SNP [dm6]	G	T	3.007e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	3.008e^-4	0.75	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18467115	2R_18467115_SNP [dm3] 2R_22579610_SNP [dm6]	G	A	3.011e^-4	0.75	INTRON dnr1
3L	18540983	3L_18540983_SNP [dm3] 3L_18547883_SNP [dm6]	C	T	3.011e^-4	0.75	INTERGENIC
2L	17526929	2L_17526929_SNP [dm3] 2L_17526929_SNP [dm6]	C	A	3.011e^-4	0.75	NON_SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4659284	3L_4659284_SNP [dm3] 3L_4659284_SNP [dm6]	A	T	3.011e^-4	0.75	INTRON axo
3L	4659285	3L_4659285_DEL [dm3] 3L_4659285_DEL [dm6]	ACT	A	3.011e^-4	0.75	INTRON axo
2R	8730215	2R_8730215_SNP [dm3] 2R_12842710_SNP [dm6]	T	G	3.012e^-4	0.75	UTR_5_PRIME Or49b UPSTREAM Cyp9h1
3L	397714	3L_397714_SNP [dm3] 3L_397714_SNP [dm6]	A	G	3.018e^-4	0.75	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7148133	3L_7148133_SNP [dm3] 3L_7155033_SNP [dm6]	T	C	3.023e^-4	0.75	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10556665	3L_10556665_SNP [dm3] 3L_10563565_SNP [dm6]	A	G	3.027e^-4	0.75	INTRON A2bp1
2L	14315551	2L_14315551_SNP [dm3] 2L_14315551_SNP [dm6]	G	T	3.028e^-4	0.75	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14315555	2L_14315555_SNP [dm3] 2L_14315555_SNP [dm6]	G	A	3.028e^-4	0.75	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	4270959	3R_4270959_SNP [dm3] 3R_8445237_SNP [dm6]	G	T	3.028e^-4	0.75	INTRON CG45263
3L	4484437	3L_4484437_SNP [dm3] 3L_4484437_SNP [dm6]	C	G	3.032e^-4	0.75	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11497107	3R_11497107_SNP [dm3] 3R_15671385_SNP [dm6]	C	G	3.033e^-4	0.75	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2253534	3R_2253534_SNP [dm3] 3R_6427812_SNP [dm6]	T	G	3.034e^-4	0.75	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1269568	2L_1269568_SNP [dm3] 2L_1269568_SNP [dm6]	C	G	3.036e^-4	0.75	INTRON robo3
2L	4847523	2L_4847523_SNP [dm3] 2L_4847523_SNP [dm6]	C	G	3.036e^-4	0.75	UPSTREAM mxt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4976931	3L_4976931_SNP [dm3] 3L_4976931_SNP [dm6]	C	A	3.037e^-4	0.75	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24550500	3R_24550500_SNP [dm3] 3R_28724778_SNP [dm6]	T	A	3.044e^-4	0.75	INTRON htt
2L	10551843	2L_10551843_SNP [dm3] 2L_10551843_SNP [dm6]	C	G	3.045e^-4	0.75	INTRON Trim9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17326858	2R_17326858_SNP [dm3] 2R_21439353_SNP [dm6]	G	A	3.045e^-4	0.75	INTRON Sdc
2R	14182485	2R_14182485_SNP [dm3] 2R_18294980_SNP [dm6]	G	T	3.046e^-4	0.75	NON_SYNONYMOUS_CODING CG18536 UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb
X	2829035	X_2829035_SNP [dm3] X_2935002_SNP [dm6]	A	T	3.049e^-4	0.75	UPSTREAM CG3592 INTRON kirre
3R	6721222	3R_6721222_SNP [dm3] 3R_10895500_SNP [dm6]	C	A	3.050e^-4	0.75	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	3850948	3L_3850948_SNP [dm3] 3L_3850948_SNP [dm6]	C	A	3.051e^-4	0.75	INTRON Awh
3L	1068181	3L_1068181_DEL [dm3] 3L_1068181_DEL [dm6]	TAT	T	3.058e^-4	0.75	INTRON bab1
3L	21330687	3L_21330687_SNP [dm3] 3L_21337587_SNP [dm6]	T	C	3.058e^-4	0.75	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3L	17627282	3L_17627282_SNP [dm3] 3L_17634182_SNP [dm6]	T	G	3.063e^-4	0.75	UPSTREAM CR44567 INTRON CG7497
3R	22563207	3R_22563207_SNP [dm3] 3R_26737485_SNP [dm6]	A	G	3.068e^-4	0.75	UPSTREAM CG14247 INTERGENIC
3R	27202226	3R_27202226_SNP [dm3] 3R_31376504_SNP [dm6]	G	T	3.087e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17948153	3L_17948153_SNP [dm3] 3L_17955053_SNP [dm6]	T	G	3.091e^-4	0.75	INTRON Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8488791	3L_8488791_SNP [dm3] 3L_8495691_SNP [dm6]	G	T	3.091e^-4	0.75	INTRON CG43163
3L	3584471	3L_3584471_SNP [dm3] 3L_3584471_SNP [dm6]	G	A	3.094e^-4	0.75	INTRON Eip63E
3L	8411951	3L_8411951_INS [dm3] 3L_8418851_INS [dm6]	G	GCCAG	3.101e^-4	0.75	INTRON CG32354
3L	2990464	3L_2990464_SNP [dm3] 3L_2990464_SNP [dm6]	A	T	3.102e^-4	0.75	INTERGENIC
X	18925607	X_18925607_SNP [dm3] X_19031574_SNP [dm6]	C	T	3.104e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6093009	3R_6093009_SNP [dm3] 3R_10267287_SNP [dm6]	G	C	3.107e^-4	0.75	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5689243	2R_5689243_SNP [dm3] 2R_9801738_SNP [dm6]	T	A	3.109e^-4	0.75	INTRON CG1688
3L	13395486	3L_13395486_SNP [dm3] 3L_13402386_SNP [dm6]	A	T	3.115e^-4	0.75	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	8381218	3R_8381218_SNP [dm3] 3R_12555496_SNP [dm6]	C	T	3.124e^-4	0.75	INTRON Octbeta2R
3L	6213452	3L_6213452_SNP [dm3] 3L_6220352_SNP [dm6]	A	G	3.137e^-4	0.75	UPSTREAM pncr008:3L INTERGENIC
3R	19174774	3R_19174774_SNP [dm3] 3R_23349052_SNP [dm6]	A	C	3.138e^-4	0.75	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9667867	3R_9667867_SNP [dm3] 3R_13842145_SNP [dm6]	C	T	3.143e^-4	0.75	INTERGENIC
2R	19363037	2R_19363037_INS [dm3] 2R_23475514_INS [dm6]	A	AA	3.149e^-4	0.75	DOWNSTREAM CG13557 INTRON CG43795
3L	11117280	3L_11117280_SNP [dm3] 3L_11124180_SNP [dm6]	G	T	3.151e^-4	0.75	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5575805	3R_5575805_SNP [dm3] 3R_9750083_SNP [dm6]	G	A	3.153e^-4	0.75	SYNONYMOUS_CODING PpD3
3L	14068415	3L_14068415_SNP [dm3] 3L_14075315_SNP [dm6]	T	C	3.154e^-4	0.75	SYNONYMOUS_CODING Pex1 UPSTREAM btl
X	18866617	X_18866617_SNP [dm3] X_18972584_SNP [dm6]	G	A	3.162e^-4	0.75	INTRON CG43759
X	12035662	X_12035662_SNP [dm3] X_12141629_SNP [dm6]	C	A	3.165e^-4	0.75	INTRON Ten-a
3L	12047479	3L_12047479_SNP [dm3] 3L_12054379_SNP [dm6]	T	G	3.173e^-4	0.75	INTRON rols
3L	4669038	3L_4669038_SNP [dm3] 3L_4669038_SNP [dm6]	A	G	3.176e^-4	0.75	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12117787	2L_12117787_SNP [dm3] 2L_12117787_SNP [dm6]	T	C	3.178e^-4	0.75	INTRON CG17211
3L	4977060	3L_4977060_SNP [dm3] 3L_4977060_SNP [dm6]	A	G	3.189e^-4	0.75	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13641817	X_13641817_SNP [dm3] X_13747784_SNP [dm6]	C	A	3.204e^-4	0.75	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8151481	X_8151481_SNP [dm3] X_8257448_SNP [dm6]	A	T	3.208e^-4	0.75	INTRON CG1632
2R	10834334	2R_10834334_DEL [dm3] 2R_14946829_DEL [dm6]	GTAGGGTGTGCAT...	G	3.210e^-4	0.75	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18962403	2R_18962403_SNP [dm3] 2R_23074880_SNP [dm6]	T	C	3.224e^-4	0.75	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11122597	3L_11122597_SNP [dm3] 3L_11129497_SNP [dm6]	G	C	3.225e^-4	0.75	UTR_5_PRIME CG42575
X	14299134	X_14299134_SNP [dm3] X_14405101_SNP [dm6]	C	A	3.227e^-4	0.75	INTRON dpr8
3R	14600805	3R_14600805_SNP [dm3] 3R_18775083_SNP [dm6]	C	T	3.227e^-4	0.75	INTRON CG7720
2L	12596720	2L_12596720_SNP [dm3] 2L_12596720_SNP [dm6]	G	A	3.230e^-4	0.75	INTRON nub
3L	7148152	3L_7148152_SNP [dm3] 3L_7155052_SNP [dm6]	C	T	3.231e^-4	0.75	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9664421	3R_9664421_SNP [dm3] 3R_13838699_SNP [dm6]	C	A	3.232e^-4	0.75	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
2R	17903500	2R_17903500_SNP [dm3] 2R_22015995_SNP [dm6]	G	C	3.235e^-4	0.75	INTRON CG34370
3R	16161698	3R_16161698_SNP [dm3] 3R_20335976_SNP [dm6]	A	G	3.240e^-4	0.75	INTERGENIC
3R	27409734	3R_27409734_SNP [dm3] 3R_31584012_SNP [dm6]	A	C	3.241e^-4	0.75	NON_SYNONYMOUS_CODING rod
2R	12520572	2R_12520572_SNP [dm3] 2R_16633067_SNP [dm6]	T	A	3.242e^-4	0.75	INTRON Alk	TF binding site mE1_TFBS_cad
3R	9664534	3R_9664534_SNP [dm3] 3R_13838812_SNP [dm6]	C	A	3.244e^-4	0.75	NON_SYNONYMOUS_CODING CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	3.244e^-4	0.75	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3R	17702059	3R_17702059_SNP [dm3] 3R_21876337_SNP [dm6]	C	A	3.245e^-4	0.75	INTRON CG6656
3R	23749487	3R_23749487_SNP [dm3] 3R_27923765_SNP [dm6]	A	G	3.245e^-4	0.75	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	3.257e^-4	0.75	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17415137	3R_17415137_SNP [dm3] 3R_21589415_SNP [dm6]	A	G	3.258e^-4	0.75	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	4314230	2L_4314230_SNP [dm3] 2L_4314230_SNP [dm6]	C	G	3.266e^-4	0.75	SYNONYMOUS_CODING tutl
3R	6732545	3R_6732545_SNP [dm3] 3R_10906823_SNP [dm6]	T	A	3.269e^-4	0.75	INTERGENIC
X	12329970	X_12329970_SNP [dm3] X_12435937_SNP [dm6]	T	G	3.271e^-4	0.75	INTRON Pkcdelta
2R	13921721	2R_13921721_SNP [dm3] 2R_18034216_SNP [dm6]	A	G	3.288e^-4	0.75	INTERGENIC
3R	22562952	3R_22562952_SNP [dm3] 3R_26737230_SNP [dm6]	G	C	3.292e^-4	0.75	UPSTREAM CG6403 & 1 other INTERGENIC
3L	7777282	3L_7777282_SNP [dm3] 3L_7784182_SNP [dm6]	G	A	3.297e^-4	0.75	INTRON CG32369
3L	7777342	3L_7777342_SNP [dm3] 3L_7784242_SNP [dm6]	A	C	3.297e^-4	0.75	INTRON CG32369
3L	6995092	3L_6995092_SNP [dm3] 3L_7001992_SNP [dm6]	A	T	3.304e^-4	0.75	INTRON Mp
3L	6995103	3L_6995103_SNP [dm3] 3L_7002003_SNP [dm6]	A	T	3.304e^-4	0.75	INTRON Mp
X	4799564	X_4799564_SNP [dm3] X_4905531_SNP [dm6]	T	C	3.307e^-4	0.75	UTR_3_PRIME CG42594
3L	8341339	3L_8341339_SNP [dm3] 3L_8348239_SNP [dm6]	G	A	3.308e^-4	0.75	INTRON GAPcenA	TF binding site mE1_TFBS_cad
2R	6146983	2R_6146983_SNP [dm3] 2R_10259478_SNP [dm6]	G	C	3.308e^-4	0.75	INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19952491	2L_19952491_SNP [dm3] 2L_19952491_SNP [dm6]	A	G	3.309e^-4	0.75	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2965147	2L_2965147_SNP [dm3] 2L_2965147_SNP [dm6]	A	G	3.323e^-4	0.75	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
3R	26409669	3R_26409669_SNP [dm3] 3R_30583947_SNP [dm6]	T	C	3.340e^-4	0.75	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409702	3R_26409702_SNP [dm3] 3R_30583980_SNP [dm6]	C	T	3.340e^-4	0.75	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3L	11427311	3L_11427311_SNP [dm3] 3L_11434211_SNP [dm6]	T	C	3.340e^-4	0.75	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4723279	3L_4723279_SNP [dm3] 3L_4723279_SNP [dm6]	A	T	3.345e^-4	0.75	INTRON RhoGEF64C	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	11290422	2R_11290422_SNP [dm3] 2R_15402917_SNP [dm6]	G	C	3.351e^-4	0.75	INTRON CG43729
3L	4257068	3L_4257068_SNP [dm3] 3L_4257068_SNP [dm6]	A	G	3.352e^-4	0.75	SPLICE_SITE_REGION CG15011 INTRON CG15011
3R	25600904	3R_25600904_SNP [dm3] 3R_29775182_SNP [dm6]	A	T	3.352e^-4	0.75	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25600986	3R_25600986_SNP [dm3] 3R_29775264_SNP [dm6]	C	T	3.352e^-4	0.75	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19174767	3R_19174767_SNP [dm3] 3R_23349045_SNP [dm6]	C	A	3.357e^-4	0.75	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	3.361e^-4	0.75	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7166044	3R_7166044_SNP [dm3] 3R_11340322_SNP [dm6]	G	A	3.363e^-4	0.75	INTRON pros	TF binding site BDTNP1_TFBS_dl
3L	7633869	3L_7633869_SNP [dm3] 3L_7640769_SNP [dm6]	A	T	3.366e^-4	0.75	UPSTREAM CG33276 DOWNSTREAM snoRNA:Me18S-A1806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6382840	3L_6382840_SNP [dm3] 3L_6389740_SNP [dm6]	G	T	3.367e^-4	0.75	INTERGENIC
3L	5891203	3L_5891203_SNP [dm3] 3L_5898103_SNP [dm6]	T	G	3.368e^-4	0.75	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	6618961	3R_6618961_SNP [dm3] 3R_10793239_SNP [dm6]	C	A	3.369e^-4	0.75	SYNONYMOUS_CODING CG14687 DOWNSTREAM CG14692	TF binding site BDTNP1_TFBS_twi
3R	23467722	3R_23467722_SNP [dm3] 3R_27642000_SNP [dm6]	C	T	3.377e^-4	0.75	UTR_3_PRIME tau DOWNSTREAM mir-1001 INTRON tau
3L	12131257	3L_12131257_SNP [dm3] 3L_12138157_SNP [dm6]	G	A	3.380e^-4	0.75	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	11277568	X_11277568_SNP [dm3] X_11383535_SNP [dm6]	G	A	3.387e^-4	0.75	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
3L	5264375	3L_5264375_SNP [dm3] 3L_5271275_SNP [dm6]	T	A	3.387e^-4	0.75	INTRON shep
2R	14727502	2R_14727502_SNP [dm3] 2R_18839997_SNP [dm6]	G	T	3.405e^-4	0.75	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3852736	3L_3852736_SNP [dm3] 3L_3852736_SNP [dm6]	T	G	3.405e^-4	0.75	INTRON Awh
3R	26409735	3R_26409735_SNP [dm3] 3R_30584013_SNP [dm6]	T	C	3.407e^-4	0.75	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3L	11120004	3L_11120004_SNP [dm3] 3L_11126904_SNP [dm6]	A	G	3.421e^-4	0.75	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	6131602	2R_6131602_SNP [dm3] 2R_10244097_SNP [dm6]	C	T	3.425e^-4	0.75	INTRON Hdc
3L	17628889	3L_17628889_SNP [dm3] 3L_17635789_SNP [dm6]	T	C	3.443e^-4	0.75	INTRON CG7497
2L	12486725	2L_12486725_SNP [dm3] 2L_12486725_SNP [dm6]	T	A	3.447e^-4	0.75	INTRON bun
3L	11115405	3L_11115405_SNP [dm3] 3L_11122305_SNP [dm6]	G	A	3.448e^-4	0.75	SYNONYMOUS_CODING Ufd1-like DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9256462	X_9256462_SNP [dm3] X_9362429_SNP [dm6]	T	C	3.449e^-4	0.75	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6008692	3L_6008692_SNP [dm3] 3L_6015592_SNP [dm6]	A	G	3.454e^-4	0.75	INTRON PVRAP
3L	6008703	3L_6008703_SNP [dm3] 3L_6015603_SNP [dm6]	C	G	3.454e^-4	0.75	INTRON PVRAP
3L	4257205	3L_4257205_SNP [dm3] 3L_4257205_SNP [dm6]	G	C	3.460e^-4	0.75	NON_SYNONYMOUS_CODING CG15011
3L	13104899	3L_13104899_SNP [dm3] 3L_13111799_SNP [dm6]	G	A	3.461e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1514448	3L_1514448_SNP [dm3] 3L_1514448_SNP [dm6]	A	G	3.464e^-4	0.75	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27345031	3R_27345031_SNP [dm3] 3R_31519309_SNP [dm6]	A	G	3.473e^-4	0.75	DOWNSTREAM CR45573 INTERGENIC
3R	27345058	3R_27345058_SNP [dm3] 3R_31519336_SNP [dm6]	T	A	3.473e^-4	0.75	DOWNSTREAM CR45573 INTERGENIC
3R	27350583	3R_27350583_SNP [dm3] 3R_31524861_SNP [dm6]	C	G	3.473e^-4	0.75	INTERGENIC
3R	25155824	3R_25155824_SNP [dm3] 3R_29330102_SNP [dm6]	C	T	3.478e^-4	0.75	INTERGENIC
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	3.478e^-4	0.75	INTERGENIC
X	14301867	X_14301867_SNP [dm3] X_14407834_SNP [dm6]	C	T	3.479e^-4	0.75	INTRON dpr8
3L	15581626	3L_15581626_SNP [dm3] 3L_15588526_SNP [dm6]	A	G	3.480e^-4	0.75	UPSTREAM RhoGAP71E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15596885	3L_15596885_SNP [dm3] 3L_15603785_SNP [dm6]	A	G	3.480e^-4	0.75	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
X	4771674	X_4771674_SNP [dm3] X_4877641_SNP [dm6]	C	T	3.482e^-4	0.75	DOWNSTREAM CG12681 INTRON CG42594
3R	19020659	3R_19020659_SNP [dm3] 3R_23194937_SNP [dm6]	G	T	3.484e^-4	0.75	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	9664267	3R_9664267_INS [dm3] 3R_13838545_INS [dm6]	T	TATT	3.484e^-4	0.75	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11107637	3L_11107637_SNP [dm3] 3L_11114537_SNP [dm6]	T	C	3.484e^-4	0.75	UTR_3_PRIME fd68A UPSTREAM Sod
3L	22921126	3L_22921126_DEL [dm3] 3L_22928026_DEL [dm6]	AGC	A	3.491e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	15454506	2L_15454506_SNP [dm3] 2L_15454506_SNP [dm6]	G	C	3.491e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17500885	3L_17500885_SNP [dm3] 3L_17507785_SNP [dm6]	C	T	3.496e^-4	0.75	UTR_5_PRIME Oatp74D	TF binding site mE1_TFBS_cad
3L	15590041	3L_15590041_SNP [dm3] 3L_15596941_SNP [dm6]	C	A	3.497e^-4	0.75	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	12879372	3L_12879372_SNP [dm3] 3L_12886272_SNP [dm6]	T	C	3.500e^-4	0.75	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
3L	13486706	3L_13486706_SNP [dm3] 3L_13493606_SNP [dm6]	A	G	3.500e^-4	0.75	INTRON Tgi
3R	16162031	3R_16162031_SNP [dm3] 3R_20336309_SNP [dm6]	G	C	3.500e^-4	0.75	INTERGENIC
3L	7692845	3L_7692845_SNP [dm3] 3L_7699745_SNP [dm6]	A	T	3.509e^-4	0.75	SYNONYMOUS_CODING Ank2 INTRON CG32373
2R	18945398	2R_18945398_SNP [dm3] 2R_23057875_SNP [dm6]	G	A	3.510e^-4	0.75	UPSTREAM CG44252 & 1 other INTRON CG44252
3L	17938653	3L_17938653_SNP [dm3] 3L_17945553_SNP [dm6]	A	G	3.510e^-4	0.75	UTR_5_PRIME CG43174
3L	12627524	3L_12627524_SNP [dm3] 3L_12634424_SNP [dm6]	G	A	3.511e^-4	0.75	INTRON CR32111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27342952	3R_27342952_SNP [dm3] 3R_31517230_SNP [dm6]	C	T	3.520e^-4	0.751	INTERGENIC
3L	17936475	3L_17936475_SNP [dm3] 3L_17943375_SNP [dm6]	T	A	3.531e^-4	0.752	INTRON CG43174
3R	18992709	3R_18992709_SNP [dm3] 3R_23166987_SNP [dm6]	A	T	3.531e^-4	0.752	INTERGENIC
2R	8173959	2R_8173959_DEL [dm3] 2R_12286454_DEL [dm6]	TGTATAT	T	3.556e^-4	0.752	INTRON CG42700
3L	13263528	3L_13263528_SNP [dm3] 3L_13270428_SNP [dm6]	T	C	3.557e^-4	0.752	INTRON caps
3R	27344488	3R_27344488_SNP [dm3] 3R_31518766_SNP [dm6]	A	C	3.558e^-4	0.752	INTERGENIC
3R	27345013	3R_27345013_SNP [dm3] 3R_31519291_SNP [dm6]	C	G	3.558e^-4	0.752	DOWNSTREAM CR45573 INTERGENIC
3R	27347671	3R_27347671_SNP [dm3] 3R_31521949_SNP [dm6]	A	G	3.558e^-4	0.752	EXON CR45573
3R	27348532	3R_27348532_SNP [dm3] 3R_31522810_SNP [dm6]	A	G	3.558e^-4	0.752	EXON CR45573
3R	27350504	3R_27350504_SNP [dm3] 3R_31524782_SNP [dm6]	T	C	3.558e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11126385	3L_11126385_SNP [dm3] 3L_11133285_SNP [dm6]	G	T	3.574e^-4	0.753	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	828091	3L_828091_SNP [dm3] 3L_828091_SNP [dm6]	G	A	3.581e^-4	0.753	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-C788b & 3 others EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	8399100	3R_8399100_SNP [dm3] 3R_12573378_SNP [dm6]	G	T	3.587e^-4	0.753	INTRON Octbeta2R
2R	5682095	2R_5682095_SNP [dm3] 2R_9794590_SNP [dm6]	C	T	3.589e^-4	0.753	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
2R	14462826	2R_14462826_DEL [dm3] 2R_18575321_DEL [dm6]	TGTGCCGCAAAAACCAGCGA...	T	3.599e^-4	0.753	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14201232	2R_14201232_SNP [dm3] 2R_18313727_SNP [dm6]	T	C	3.600e^-4	0.753	INTRON sbb	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	12487045	2L_12487045_SNP [dm3] 2L_12487045_SNP [dm6]	A	G	3.601e^-4	0.753	INTRON bun
3R	21794017	3R_21794017_SNP [dm3] 3R_25968295_SNP [dm6]	T	G	3.605e^-4	0.753	INTERGENIC
3L	17928775	3L_17928775_SNP [dm3] 3L_17935675_SNP [dm6]	C	T	3.607e^-4	0.753	DOWNSTREAM CG43173 INTRON CG43174
3R	26940117	3R_26940117_SNP [dm3] 3R_31114395_SNP [dm6]	C	T	3.608e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6798353	3R_6798353_SNP [dm3] 3R_10972631_SNP [dm6]	C	G	3.610e^-4	0.753	START_GAINED CG34114 UTR_5_PRIME CG34114
2L	19998023	2L_19998023_DEL [dm3] 2L_19998023_DEL [dm6]	ATTA	A	3.616e^-4	0.753	INTRON CG43861
3L	11273746	3L_11273746_SNP [dm3] 3L_11280646_SNP [dm6]	A	C	3.621e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12447524	3R_12447524_SNP [dm3] 3R_16621802_SNP [dm6]	A	T	3.642e^-4	0.757	NON_SYNONYMOUS_CODING CG14893 DOWNSTREAM CG14905
3R	11594551	3R_11594551_SNP [dm3] 3R_15768829_SNP [dm6]	C	T	3.651e^-4	0.758	INTERGENIC
3L	11115585	3L_11115585_SNP [dm3] 3L_11122485_SNP [dm6]	C	G	3.676e^-4	0.762	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11119650	3L_11119650_SNP [dm3] 3L_11126550_SNP [dm6]	G	A	3.684e^-4	0.762	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11120101	3L_11120101_SNP [dm3] 3L_11127001_SNP [dm6]	G	C	3.684e^-4	0.762	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	9451841	3R_9451841_SNP [dm3] 3R_13626119_SNP [dm6]	G	A	3.707e^-4	0.763	INTERGENIC
2R	7407685	2R_7407685_SNP [dm3] 2R_11520180_SNP [dm6]	A	T	3.709e^-4	0.763	INTERGENIC
3L	2961520	3L_2961520_SNP [dm3] 3L_2961520_SNP [dm6]	T	A	3.711e^-4	0.763	UPSTREAM Or63a & 1 other INTERGENIC
3L	14065960	3L_14065960_SNP [dm3] 3L_14072860_SNP [dm6]	T	G	3.727e^-4	0.763	SYNONYMOUS_CODING Pex1
2L	14434177	2L_14434177_SNP [dm3] 2L_14434177_SNP [dm6]	C	T	3.741e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	1568423	X_1568423_SNP [dm3] X_1674390_SNP [dm6]	G	A	3.741e^-4	0.763	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	14068289	3L_14068289_SNP [dm3] 3L_14075189_SNP [dm6]	G	T	3.741e^-4	0.763	SYNONYMOUS_CODING Pex1 UPSTREAM btl
3R	27344555	3R_27344555_DEL [dm3] 3R_31518833_DEL [dm6]	TATCG	T	3.752e^-4	0.763	INTERGENIC
3L	1843068	3L_1843068_SNP [dm3] 3L_1843068_SNP [dm6]	A	T	3.754e^-4	0.763	UPSTREAM Cpr62Bc INTERGENIC
2L	2070979	2L_2070979_SNP [dm3] 2L_2070979_SNP [dm6]	A	G	3.771e^-4	0.763	INTRON dpr3
2R	8550805	2R_8550805_SNP [dm3] 2R_12663300_SNP [dm6]	G	T	3.777e^-4	0.763	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8551178	2R_8551178_SNP [dm3] 2R_12663673_SNP [dm6]	G	A	3.777e^-4	0.763	INTRON nemy	TF binding site mE1_TFBS_cad
2R	8551492	2R_8551492_SNP [dm3] 2R_12663987_SNP [dm6]	C	A	3.777e^-4	0.763	INTRON nemy
2R	8551702	2R_8551702_SNP [dm3] 2R_12664197_SNP [dm6]	A	G	3.777e^-4	0.763	INTRON nemy
3L	13558866	3L_13558866_SNP [dm3] 3L_13565766_SNP [dm6]	G	C	3.777e^-4	0.763	INTRON bru-3
3R	8379044	3R_8379044_SNP [dm3] 3R_12553322_SNP [dm6]	T	G	3.785e^-4	0.763	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_sna
3L	13330655	3L_13330655_SNP [dm3] 3L_13337555_SNP [dm6]	C	A	3.785e^-4	0.763	INTERGENIC
3R	25528306	3R_25528306_SNP [dm3] 3R_29702584_SNP [dm6]	A	G	3.788e^-4	0.763	INTERGENIC
3R	23039608	3R_23039608_SNP [dm3] 3R_27213886_SNP [dm6]	A	G	3.788e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6872245	3L_6872245_SNP [dm3] 3L_6879145_SNP [dm6]	C	A	3.788e^-4	0.763	INTERGENIC
3R	10604636	3R_10604636_SNP [dm3] 3R_14778914_SNP [dm6]	T	C	3.790e^-4	0.763	INTRON jvl
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	3.795e^-4	0.763	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	5964294	X_5964294_SNP [dm3] X_6070261_SNP [dm6]	A	G	3.796e^-4	0.763	DOWNSTREAM CG5928 INTRON Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7097388	3L_7097388_SNP [dm3] 3L_7104288_SNP [dm6]	C	A	3.798e^-4	0.763	INTRON form3
2L	9149811	2L_9149811_SNP [dm3] 2L_9149811_SNP [dm6]	A	T	3.800e^-4	0.763	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	3.802e^-4	0.763	DOWNSTREAM CR32027 INTRON Indy
3L	9681572	3L_9681572_SNP [dm3] 3L_9688472_SNP [dm6]	C	G	3.806e^-4	0.763	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12661146	2L_12661146_SNP [dm3] 2L_12661146_SNP [dm6]	C	G	3.810e^-4	0.763	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19003049	3R_19003049_SNP [dm3] 3R_23177327_SNP [dm6]	T	C	3.812e^-4	0.763	INTRON Irk1
3L	17628896	3L_17628896_SNP [dm3] 3L_17635796_SNP [dm6]	T	C	3.819e^-4	0.763	INTRON CG7497
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	3.825e^-4	0.763	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
X	18401895	X_18401895_SNP [dm3] X_18507862_SNP [dm6]	G	A	3.825e^-4	0.763	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4252069	3L_4252069_SNP [dm3] 3L_4252069_SNP [dm6]	T	G	3.832e^-4	0.763	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	15102300	3L_15102300_INS [dm3] 3L_15109200_INS [dm6]	A	AGCGTCTTTAATTT...	3.832e^-4	0.763	UPSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
3R	22562683	3R_22562683_SNP [dm3] 3R_26736961_SNP [dm6]	G	A	3.840e^-4	0.763	UPSTREAM CG6403 & 1 other INTERGENIC
3L	13266809	3L_13266809_SNP [dm3] 3L_13273709_SNP [dm6]	C	G	3.848e^-4	0.763	INTRON caps
2R	16062602	2R_16062602_SNP [dm3] 2R_20175097_SNP [dm6]	T	C	3.854e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10998618	3L_10998618_SNP [dm3] 3L_11005518_SNP [dm6]	A	G	3.854e^-4	0.763	INTRON klu
2L	12486674	2L_12486674_SNP [dm3] 2L_12486674_SNP [dm6]	G	A	3.859e^-4	0.763	INTRON bun
3R	14664078	3R_14664078_SNP [dm3] 3R_18838356_SNP [dm6]	A	G	3.860e^-4	0.763	INTRON CG18208
3R	6723848	3R_6723848_SNP [dm3] 3R_10898126_SNP [dm6]	G	T	3.861e^-4	0.763	UPSTREAM CR45577 EXON CR45578
2R	2867001	2R_2867001_SNP [dm3] 2R_6979496_SNP [dm6]	A	T	3.871e^-4	0.764	DOWNSTREAM CR44171 INTRON vimar EXON CR44170
X	12035589	X_12035589_SNP [dm3] X_12141556_SNP [dm6]	C	T	3.877e^-4	0.764	INTRON Ten-a
3R	25510845	3R_25510845_SNP [dm3] 3R_29685123_SNP [dm6]	T	G	3.881e^-4	0.764	SYNONYMOUS_CODING Gycalpha99B DOWNSTREAM Obp99c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13343986	X_13343986_SNP [dm3] X_13449953_SNP [dm6]	T	A	3.887e^-4	0.764	INTRON Neto
2R	17461048	2R_17461048_SNP [dm3] 2R_21573543_SNP [dm6]	G	A	3.888e^-4	0.764	INTRON CG10440
2R	6003323	2R_6003323_SNP [dm3] 2R_10115818_SNP [dm6]	G	C	3.899e^-4	0.766	SYNONYMOUS_CODING Pfk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17841604	3R_17841604_SNP [dm3] 3R_22015882_SNP [dm6]	A	G	3.909e^-4	0.766	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	13470157	3L_13470157_DEL [dm3] 3L_13477057_DEL [dm6]	AACCGT	A	3.916e^-4	0.766	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13470164	3L_13470164_SNP [dm3] 3L_13477064_SNP [dm6]	T	A	3.916e^-4	0.766	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	21936224	3L_21936224_SNP [dm3] 3L_21943124_SNP [dm6]	C	G	3.916e^-4	0.766	INTRON CG14562
3L	10556633	3L_10556633_SNP [dm3] 3L_10563533_SNP [dm6]	A	T	3.932e^-4	0.767	INTRON A2bp1
3L	18474806	3L_18474806_SNP [dm3] 3L_18481706_SNP [dm6]	T	C	3.942e^-4	0.767	INTERGENIC
2L	4979281	2L_4979281_SNP [dm3] 2L_4979281_SNP [dm6]	T	A	3.950e^-4	0.767	UTR_5_PRIME CG8891 DOWNSTREAM CG8892 & 1 other	TF binding site mE1_TFBS_chinmo
2L	14315563	2L_14315563_SNP [dm3] 2L_14315563_SNP [dm6]	T	A	3.951e^-4	0.767	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4979303	2L_4979303_SNP [dm3] 2L_4979303_SNP [dm6]	A	T	3.954e^-4	0.767	UTR_5_PRIME CG8891 DOWNSTREAM CG8892 & 1 other	TF binding site mE1_TFBS_chinmo
3L	3510493	3L_3510493_SNP [dm3] 3L_3510493_SNP [dm6]	T	G	3.959e^-4	0.767	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2R	15990571	2R_15990571_SNP [dm3] 2R_20103066_SNP [dm6]	G	C	3.961e^-4	0.767	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4895189	X_4895189_SNP [dm3] X_5001156_SNP [dm6]	C	A	3.969e^-4	0.767	INTRON CR44833	regulatory region REDfly_CRMs
X	4895205	X_4895205_SNP [dm3] X_5001172_SNP [dm6]	G	A	3.969e^-4	0.767	INTRON CR44833	regulatory region REDfly_CRMs
X	4895215	X_4895215_SNP [dm3] X_5001182_SNP [dm6]	A	G	3.969e^-4	0.767	INTRON CR44833	regulatory region REDfly_CRMs
2L	2491240	2L_2491240_SNP [dm3] 2L_2491240_SNP [dm6]	A	G	3.969e^-4	0.767	SYNONYMOUS_CODING Slh	enhancer FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7947089	3R_7947089_SNP [dm3] 3R_12121367_SNP [dm6]	G	C	3.973e^-4	0.767	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	15135088	2L_15135088_SNP [dm3] 2L_15135088_SNP [dm6]	G	C	3.985e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15945568	3R_15945568_SNP [dm3] 3R_20119846_SNP [dm6]	C	T	3.987e^-4	0.767	INTERGENIC
X	3462669	X_3462669_DEL [dm3] X_3568636_DEL [dm6]	GCGTAG	G	3.987e^-4	0.767	UTR_5_PRIME CG32791 UPSTREAM ppk8 INTRON ppk8
3L	19171476	3L_19171476_SNP [dm3] 3L_19178376_SNP [dm6]	A	G	4.013e^-4	0.769	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7777280	3L_7777280_SNP [dm3] 3L_7784180_SNP [dm6]	C	A	4.018e^-4	0.769	INTRON CG32369
3L	18429401	3L_18429401_SNP [dm3] 3L_18436301_SNP [dm6]	G	C	4.018e^-4	0.769	INTERGENIC
3L	17875819	3L_17875819_SNP [dm3] 3L_17882719_SNP [dm6]	T	C	4.022e^-4	0.769	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
X	14301330	X_14301330_SNP [dm3] X_14407297_SNP [dm6]	A	T	4.028e^-4	0.769	INTRON dpr8
3L	11108281	3L_11108281_SNP [dm3] 3L_11115181_SNP [dm6]	G	A	4.028e^-4	0.769	SYNONYMOUS_CODING fd68A
3L	11117038	3L_11117038_SNP [dm3] 3L_11123938_SNP [dm6]	T	A	4.035e^-4	0.769	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117246	3L_11117246_SNP [dm3] 3L_11124146_SNP [dm6]	C	T	4.035e^-4	0.769	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117286	3L_11117286_SNP [dm3] 3L_11124186_SNP [dm6]	G	T	4.035e^-4	0.769	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17725678	2R_17725678_SNP [dm3] 2R_21838173_SNP [dm6]	G	A	4.044e^-4	0.77	NON_SYNONYMOUS_CODING CG4372
3L	6995117	3L_6995117_SNP [dm3] 3L_7002017_SNP [dm6]	A	T	4.050e^-4	0.77	INTRON Mp
3L	4538004	3L_4538004_SNP [dm3] 3L_4538004_SNP [dm6]	A	G	4.050e^-4	0.77	SYNONYMOUS_CODING CG11353
3L	11132823	3L_11132823_DEL [dm3] 3L_11139723_DEL [dm6]	AA	A	4.054e^-4	0.77	INTRON CG32082
3R	5994151	3R_5994151_SNP [dm3] 3R_10168429_SNP [dm6]	A	G	4.061e^-4	0.77	INTRON Best1	TF binding site mE1_TFBS_zfh1
2L	12134586	2L_12134586_SNP [dm3] 2L_12134586_SNP [dm6]	G	C	4.067e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26062130	3R_26062130_SNP [dm3] 3R_30236408_SNP [dm6]	C	T	4.071e^-4	0.77	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5903023	3L_5903023_SNP [dm3] 3L_5909923_SNP [dm6]	G	T	4.077e^-4	0.771	DOWNSTREAM CG13288 INTRON CG13288
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	4.089e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad
X	3257987	X_3257987_SNP [dm3] X_3363954_SNP [dm6]	A	G	4.095e^-4	0.772	INTERGENIC
3L	6334865	3L_6334865_SNP [dm3] 3L_6341765_SNP [dm6]	G	A	4.099e^-4	0.772	INTRON CG13300
3L	18789180	3L_18789180_SNP [dm3] 3L_18796080_SNP [dm6]	G	C	4.099e^-4	0.772	INTRON ftz-f1
2L	13328028	2L_13328028_DEL [dm3] 2L_13328028_DEL [dm6]	GCTATG	A	4.110e^-4	0.772	INTRON CG43778
3L	13395559	3L_13395559_INS [dm3] 3L_13402459_INS [dm6]	T	TGGTTTACTTCGCCAT...	4.113e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9139021	2L_9139021_SNP [dm3] 2L_9139021_SNP [dm6]	C	A	4.124e^-4	0.772	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13310996	3L_13310996_DEL [dm3] 3L_13317896_DEL [dm6]	GTTTAAAG	T	4.130e^-4	0.772	INTERGENIC
3L	4257151	3L_4257151_SNP [dm3] 3L_4257151_SNP [dm6]	C	G	4.133e^-4	0.772	SYNONYMOUS_CODING CG15011
2R	11839688	2R_11839688_SNP [dm3] 2R_15952183_SNP [dm6]	A	G	4.145e^-4	0.772	UPSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6797430	3R_6797430_SNP [dm3] 3R_10971708_SNP [dm6]	G	T	4.148e^-4	0.772	UPSTREAM CG34114 INTERGENIC
3R	26297737	3R_26297737_SNP [dm3] 3R_30472015_SNP [dm6]	C	G	4.151e^-4	0.772	INTRON PH4alphaEFB
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	4.157e^-4	0.772	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12489439	2L_12489439_SNP [dm3] 2L_12489439_SNP [dm6]	A	G	4.162e^-4	0.772	INTRON bun	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11381561	2R_11381561_SNP [dm3] 2R_15494056_SNP [dm6]	A	C	4.163e^-4	0.772	INTRON CG12964
2R	11381562	2R_11381562_SNP [dm3] 2R_15494057_SNP [dm6]	T	C	4.163e^-4	0.772	INTRON CG12964
2R	11381616	2R_11381616_SNP [dm3] 2R_15494111_SNP [dm6]	G	A	4.163e^-4	0.772	INTRON CG12964
2R	11381644	2R_11381644_SNP [dm3] 2R_15494139_SNP [dm6]	C	T	4.163e^-4	0.772	INTRON CG12964
3L	5675846	3L_5675846_SNP [dm3] 3L_5682746_SNP [dm6]	A	G	4.174e^-4	0.772	INTRON sif
3L	11112611	3L_11112611_INS [dm3] 3L_11119511_INS [dm6]	T	TT	4.174e^-4	0.772	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17253880	2R_17253880_SNP [dm3] 2R_21366375_SNP [dm6]	A	G	4.177e^-4	0.772	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26047653	3R_26047653_SNP [dm3] 3R_30221931_SNP [dm6]	T	A	4.206e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9437926	2L_9437926_SNP [dm3] 2L_9437926_SNP [dm6]	C	G	4.211e^-4	0.772	UTR_5_PRIME numb DOWNSTREAM RpS28-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13255697	3L_13255697_SNP [dm3] 3L_13262597_SNP [dm6]	G	T	4.213e^-4	0.772	INTRON caps
3R	27350709	3R_27350709_SNP [dm3] 3R_31524987_SNP [dm6]	A	G	4.217e^-4	0.772	INTERGENIC
3R	5119061	3R_5119061_SNP [dm3] 3R_9293339_SNP [dm6]	A	G	4.246e^-4	0.772	DOWNSTREAM CG8861 INTERGENIC
3L	18371018	3L_18371018_SNP [dm3] 3L_18377918_SNP [dm6]	T	A	4.248e^-4	0.772	INTERGENIC
2L	12157724	2L_12157724_SNP [dm3] 2L_12157724_SNP [dm6]	C	A	4.250e^-4	0.772	INTRON CG31760
3L	3780832	3L_3780832_SNP [dm3] 3L_3780832_SNP [dm6]	T	C	4.251e^-4	0.772	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6815074	X_6815074_SNP [dm3] X_6921041_SNP [dm6]	T	A	4.254e^-4	0.772	INTRON CG14431
3L	14064627	3L_14064627_SNP [dm3] 3L_14071527_SNP [dm6]	A	T	4.263e^-4	0.772	UTR_3_PRIME CG32138 UPSTREAM Pex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14065433	3L_14065433_SNP [dm3] 3L_14072333_SNP [dm6]	C	T	4.263e^-4	0.772	DOWNSTREAM CG32138 INTRON Pex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	4026487	3L_4026487_SNP [dm3] 3L_4026487_SNP [dm6]	T	A	4.263e^-4	0.772	UPSTREAM Gr64a & 1 other INTERGENIC
3L	3215414	3L_3215414_SNP [dm3] 3L_3215414_SNP [dm6]	C	T	4.269e^-4	0.772	SYNONYMOUS_CODING CG14967
3L	2210331	3L_2210331_SNP [dm3] 3L_2210331_SNP [dm6]	C	T	4.271e^-4	0.772	DOWNSTREAM CG15878 INTERGENIC
X	5533086	X_5533086_SNP [dm3] X_5639053_SNP [dm6]	A	G	4.272e^-4	0.772	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10782781	3R_10782781_SNP [dm3] 3R_14957059_SNP [dm6]	T	A	4.275e^-4	0.772	INTERGENIC
3R	10347330	3R_10347330_SNP [dm3] 3R_14521608_SNP [dm6]	C	G	4.280e^-4	0.772	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
3L	11472554	3L_11472554_SNP [dm3] 3L_11479454_SNP [dm6]	C	T	4.285e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_Kr

Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_SS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results