DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.356e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1864 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	17610057	2L_17610057_SNP [dm3] 2L_17610057_SNP [dm6]	A	T	3.420e^-7	0.26	INTERGENIC
2L	17610079	2L_17610079_SNP [dm3] 2L_17610079_SNP [dm6]	C	T	3.420e^-7	0.26	INTERGENIC
2L	17610059	2L_17610059_SNP [dm3] 2L_17610059_SNP [dm6]	C	T	4.641e^-7	0.26	INTERGENIC
3R	14534556	3R_14534556_SNP [dm3] 3R_18708834_SNP [dm6]	A	G	7.234e^-7	0.26	INTRON VAChT & 1 other
3L	10699839	3L_10699839_SNP [dm3] 3L_10706739_SNP [dm6]	T	G	8.228e^-7	0.26	INTERGENIC
2R	16915212	2R_16915212_SNP [dm3] 2R_21027707_SNP [dm6]	T	A	8.597e^-7	0.26	INTERGENIC
3L	10699681	3L_10699681_SNP [dm3] 3L_10706581_SNP [dm6]	A	G	1.971e^-6	0.396	INTERGENIC
X	10921069	X_10921069_SNP [dm3] X_11027036_SNP [dm6]	T	A	2.120e^-6	0.396	INTRON CG42339
3R	25771769	3R_25771769_SNP [dm3] 3R_29946047_SNP [dm6]	A	C	2.458e^-6	0.396	SYNONYMOUS_CODING CG15523
3R	25771814	3R_25771814_SNP [dm3] 3R_29946092_SNP [dm6]	A	G	2.458e^-6	0.396	SYNONYMOUS_CODING CG15523
3L	7411553	3L_7411553_SNP [dm3] 3L_7418453_SNP [dm6]	A	G	2.529e^-6	0.396	INTERGENIC
3L	7411563	3L_7411563_SNP [dm3] 3L_7418463_SNP [dm6]	G	A	2.774e^-6	0.396	INTERGENIC
2R	6073805	2R_6073805_SNP [dm3] 2R_10186300_SNP [dm6]	T	C	3.660e^-6	0.396	INTRON KCNQ
3R	26987833	3R_26987833_SNP [dm3] 3R_31162111_SNP [dm6]	C	A	3.886e^-6	0.396	INTRON Gycbeta100B & 1 other
3L	22827282	3L_22827282_SNP [dm3] 3L_22834182_SNP [dm6]	G	T	3.926e^-6	0.396	UPSTREAM jim INTRON jim	TF binding site mE1_TFBS_Trl
3R	25772060	3R_25772060_SNP [dm3] 3R_29946338_SNP [dm6]	G	A	4.168e^-6	0.396	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3L	10699624	3L_10699624_SNP [dm3] 3L_10706524_SNP [dm6]	A	G	4.591e^-6	0.396	INTERGENIC
3L	10699625	3L_10699625_SNP [dm3] 3L_10706525_SNP [dm6]	C	A	4.591e^-6	0.396	INTERGENIC
3R	25772129	3R_25772129_SNP [dm3] 3R_29946407_SNP [dm6]	G	A	4.679e^-6	0.396	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
2R	6073806	2R_6073806_SNP [dm3] 2R_10186301_SNP [dm6]	G	A	5.072e^-6	0.396	INTRON KCNQ
3R	25771709	3R_25771709_SNP [dm3] 3R_29945987_SNP [dm6]	A	G	5.102e^-6	0.396	SYNONYMOUS_CODING CG15523
2L	17610035	2L_17610035_SNP [dm3] 2L_17610035_SNP [dm6]	G	A	5.337e^-6	0.396	INTERGENIC
2L	17610103	2L_17610103_SNP [dm3] 2L_17610103_SNP [dm6]	G	C	5.337e^-6	0.396	INTERGENIC
3L	22827222	3L_22827222_SNP [dm3] 3L_22834122_SNP [dm6]	G	A	5.436e^-6	0.396	UPSTREAM jim INTRON jim	TF binding site mE1_TFBS_Trl
3R	25778123	3R_25778123_SNP [dm3] 3R_29952401_SNP [dm6]	A	G	5.575e^-6	0.396	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
X	5588282	X_5588282_SNP [dm3] X_5694249_SNP [dm6]	C	G	5.844e^-6	0.396	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	27612051	3R_27612051_SNP [dm3] 3R_31786329_SNP [dm6]	A	T	6.016e^-6	0.396	INTRON faf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16059546	2R_16059546_SNP [dm3] 2R_20172041_SNP [dm6]	G	A	6.211e^-6	0.396	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2899649	3L_2899649_SNP [dm3] 3L_2899649_SNP [dm6]	A	T	6.567e^-6	0.396	INTRON Shab
2L	17610101	2L_17610101_SNP [dm3] 2L_17610101_SNP [dm6]	A	G	7.202e^-6	0.396	INTERGENIC
2L	17610129	2L_17610129_SNP [dm3] 2L_17610129_SNP [dm6]	T	A	7.202e^-6	0.396	INTERGENIC
2L	17610132	2L_17610132_SNP [dm3] 2L_17610132_SNP [dm6]	T	C	7.202e^-6	0.396	INTERGENIC
2L	17610146	2L_17610146_SNP [dm3] 2L_17610146_SNP [dm6]	C	T	7.202e^-6	0.396	INTERGENIC
3R	25771202	3R_25771202_SNP [dm3] 3R_29945480_SNP [dm6]	G	A	7.838e^-6	0.416	SYNONYMOUS_CODING CG15523
X	10921050	X_10921050_SNP [dm3] X_11027017_SNP [dm6]	T	C	8.013e^-6	0.416	INTRON CG42339
2R	17391679	2R_17391679_SNP [dm3] 2R_21504174_SNP [dm6]	T	G	8.773e^-6	0.443	INTRON MESK2	TF binding site mE1_TFBS_inv
2L	17610143	2L_17610143_SNP [dm3] 2L_17610143_SNP [dm6]	T	A	9.719e^-6	0.45	INTERGENIC
3R	25771996	3R_25771996_SNP [dm3] 3R_29946274_SNP [dm6]	A	G	9.772e^-6	0.45	NON_SYNONYMOUS_CODING CG15523
3R	25772012	3R_25772012_SNP [dm3] 3R_29946290_SNP [dm6]	C	T	9.772e^-6	0.45	SYNONYMOUS_CODING CG15523
3L	18304828	3L_18304828_SNP [dm3] 3L_18311728_SNP [dm6]	A	G	9.911e^-6	0.45	INTERGENIC
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	1.018e^-5	0.451	INTRON Tgi
3L	18538852	3L_18538852_SNP [dm3] 3L_18545752_SNP [dm6]	C	T	1.068e^-5	0.462	INTERGENIC
2R	14188524	2R_14188524_SNP [dm3] 2R_18301019_SNP [dm6]	T	C	1.126e^-5	0.474	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25771727	3R_25771727_SNP [dm3] 3R_29946005_SNP [dm6]	C	T	1.164e^-5	0.474	SYNONYMOUS_CODING CG15523
2L	9455279	2L_9455279_SNP [dm3] 2L_9455279_SNP [dm6]	G	A	1.175e^-5	0.474	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16782396	3R_16782396_SNP [dm3] 3R_20956674_SNP [dm6]	C	T	1.229e^-5	0.485	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24464008	3R_24464008_SNP [dm3] 3R_28638286_SNP [dm6]	A	G	1.268e^-5	0.49	SYNONYMOUS_CODING CG9988	TF binding site mE1_TFBS_cad
3R	18042429	3R_18042429_SNP [dm3] 3R_22216707_SNP [dm6]	T	C	1.305e^-5	0.492	UTR_3_PRIME Gld2 INTRON SKIP
3L	1002042	3L_1002042_SNP [dm3] 3L_1002042_SNP [dm6]	C	A	1.326e^-5	0.492	INTRON trio
3L	7411392	3L_7411392_SNP [dm3] 3L_7418292_SNP [dm6]	C	A	1.501e^-5	0.518	INTERGENIC
3R	14534616	3R_14534616_SNP [dm3] 3R_18708894_SNP [dm6]	A	T	1.529e^-5	0.518	INTRON VAChT & 1 other
3R	14534645	3R_14534645_INS [dm3] 3R_18708923_INS [dm6]	A	AT	1.529e^-5	0.518	INTRON VAChT & 1 other
2L	9312830	2L_9312830_SNP [dm3] 2L_9312830_SNP [dm6]	G	A	1.600e^-5	0.518	INTERGENIC
3R	26410771	3R_26410771_SNP [dm3] 3R_30585049_SNP [dm6]	G	A	1.606e^-5	0.518	INTRON CG9717	TF binding site mE1_TFBS_cad
2R	16281429	2R_16281429_INS [dm3] 2R_20393924_INS [dm6]	T	TAA	1.627e^-5	0.518	INTERGENIC
2R	16281431	2R_16281431_SNP [dm3] 2R_20393926_SNP [dm6]	G	A	1.627e^-5	0.518	INTERGENIC
2L	10018734	2L_10018734_SNP [dm3] 2L_10018734_SNP [dm6]	G	C	1.632e^-5	0.518	INTERGENIC
2R	3739755	2R_3739755_SNP [dm3] 2R_7852250_SNP [dm6]	G	C	1.653e^-5	0.518	INTRON Dgk
X	291793	X_291793_INS [dm3] X_397760_INS [dm6]	A	ATGTCAAATGTCAA...	1.700e^-5	0.521	DOWNSTREAM sc INTRON CG32816
3L	2887940	3L_2887940_SNP [dm3] 3L_2887940_SNP [dm6]	A	C	1.749e^-5	0.521	INTRON spz5
3R	25771267	3R_25771267_SNP [dm3] 3R_29945545_SNP [dm6]	C	A	1.750e^-5	0.521	NON_SYNONYMOUS_CODING CG15523
2L	10194988	2L_10194988_DEL [dm3] 2L_10194988_DEL [dm6]	GTT	AA	1.781e^-5	0.522	SPLICE_SITE_REGION Sur INTRON Sur
3R	11622683	3R_11622683_SNP [dm3] 3R_15796961_SNP [dm6]	A	T	1.811e^-5	0.522	INTRON nsl1
3R	16782432	3R_16782432_SNP [dm3] 3R_20956710_SNP [dm6]	G	A	1.866e^-5	0.522	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3601741	3R_3601741_SNP [dm3] 3R_7776019_SNP [dm6]	G	T	1.867e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16496178	2R_16496178_SNP [dm3] 2R_20608673_SNP [dm6]	T	C	1.910e^-5	0.526	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4343818	2L_4343818_SNP [dm3] 2L_4343818_SNP [dm6]	C	G	1.966e^-5	0.533	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005	TF binding site mE1_TFBS_inv
3R	25767661	3R_25767661_SNP [dm3] 3R_29941939_SNP [dm6]	T	A	2.064e^-5	0.54	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_HSA
3L	15202161	3L_15202161_SNP [dm3] 3L_15209061_SNP [dm6]	A	T	2.066e^-5	0.54	DOWNSTREAM CG6888 INTERGENIC
2L	17169758	2L_17169758_SNP [dm3] 2L_17169758_SNP [dm6]	T	A	2.121e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169760	2L_17169760_MNP [dm3] 2L_17169760_MNP [dm6]	TAT	ATC	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169763	2L_17169763_INS [dm3] 2L_17169763_INS [dm6]	A	AT	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169766	2L_17169766_SNP [dm3] 2L_17169766_SNP [dm6]	C	T	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169773	2L_17169773_SNP [dm3] 2L_17169773_SNP [dm6]	A	G	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169774	2L_17169774_SNP [dm3] 2L_17169774_SNP [dm6]	T	A	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
2L	17169776	2L_17169776_SNP [dm3] 2L_17169776_SNP [dm6]	C	T	2.258e^-5	0.54	INTRON beat-IIIa & 1 other
3R	25771589	3R_25771589_SNP [dm3] 3R_29945867_SNP [dm6]	T	C	2.368e^-5	0.559	INTRON CG15523
2L	17610607	2L_17610607_INS [dm3] 2L_17610607_INS [dm6]	G	GCTCCTG	2.506e^-5	0.575	INTERGENIC
2R	13803014	2R_13803014_SNP [dm3] 2R_17915509_SNP [dm6]	T	C	2.507e^-5	0.575	INTRON Elk
2L	17468255	2L_17468255_SNP [dm3] 2L_17468255_SNP [dm6]	G	C	2.549e^-5	0.575	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20434979	X_20434979_SNP [dm3] X_20563952_SNP [dm6]	C	A	2.576e^-5	0.575	INTRON RunxB
X	5588315	X_5588315_SNP [dm3] X_5694282_SNP [dm6]	A	G	2.594e^-5	0.575	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	2888085	3L_2888085_SNP [dm3] 3L_2888085_SNP [dm6]	G	T	2.637e^-5	0.577	INTRON spz5
2R	14187640	2R_14187640_SNP [dm3] 2R_18300135_SNP [dm6]	A	C	2.727e^-5	0.59	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15248820	2L_15248820_SNP [dm3] 2L_15248820_SNP [dm6]	A	C	2.868e^-5	0.604	UPSTREAM dao INTERGENIC	TF binding site mE1_TFBS_cad
2L	9154834	2L_9154834_SNP [dm3] 2L_9154834_SNP [dm6]	G	A	2.947e^-5	0.604	INTRON CG32982
2L	9154836	2L_9154836_SNP [dm3] 2L_9154836_SNP [dm6]	A	C	2.947e^-5	0.604	INTRON CG32982
3L	7411587	3L_7411587_SNP [dm3] 3L_7418487_SNP [dm6]	A	T	3.039e^-5	0.604	INTERGENIC
3L	7411594	3L_7411594_SNP [dm3] 3L_7418494_SNP [dm6]	C	T	3.039e^-5	0.604	INTERGENIC
X	19964280	X_19964280_SNP [dm3] X_20070247_SNP [dm6]	C	T	3.051e^-5	0.604	INTERGENIC
3L	8206920	3L_8206920_SNP [dm3] 3L_8213820_SNP [dm6]	T	A	3.103e^-5	0.604	DOWNSTREAM CG8006 INTERGENIC
3L	14122573	3L_14122573_SNP [dm3] 3L_14129473_SNP [dm6]	G	A	3.116e^-5	0.604	INTRON Sox21b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22826562	3L_22826562_SNP [dm3] 3L_22833462_SNP [dm6]	T	A	3.139e^-5	0.604	UTR_5_PRIME jim UPSTREAM jim
2L	15325079	2L_15325079_SNP [dm3] 2L_15325079_SNP [dm6]	A	G	3.156e^-5	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	3685716	2R_3685716_SNP [dm3] 2R_7798211_SNP [dm6]	G	C	3.160e^-5	0.604	SYNONYMOUS_CODING mus205	TF binding site mE1_TFBS_cad
2R	4273455	2R_4273455_SNP [dm3] 2R_8385950_SNP [dm6]	T	A	3.275e^-5	0.62	INTRON pdm3
X	3157985	X_3157985_SNP [dm3] X_3263952_SNP [dm6]	G	T	3.352e^-5	0.622	INTRON dnc
2R	16281426	2R_16281426_SNP [dm3] 2R_20393921_SNP [dm6]	G	A	3.388e^-5	0.622	INTERGENIC
2R	16281427	2R_16281427_SNP [dm3] 2R_20393922_SNP [dm6]	C	T	3.388e^-5	0.622	INTERGENIC
3R	10355508	3R_10355508_SNP [dm3] 3R_14529786_SNP [dm6]	T	C	3.473e^-5	0.628	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11144959	X_11144959_SNP [dm3] X_11250926_SNP [dm6]	A	T	3.523e^-5	0.628	INTRON CG44422
X	8957084	X_8957084_SNP [dm3] X_9063051_SNP [dm6]	C	T	3.548e^-5	0.628	INTRON CG15365
3R	14555493	3R_14555493_SNP [dm3] 3R_18729771_SNP [dm6]	C	T	3.642e^-5	0.628	SYNONYMOUS_CODING Cha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25772183	3R_25772183_SNP [dm3] 3R_29946461_SNP [dm6]	A	G	3.667e^-5	0.628	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
2L	10072746	2L_10072746_SNP [dm3] 2L_10072746_SNP [dm6]	T	G	3.699e^-5	0.628	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12616596	X_12616596_SNP [dm3] X_12722563_SNP [dm6]	A	T	3.700e^-5	0.628	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
X	12616618	X_12616618_SNP [dm3] X_12722585_SNP [dm6]	T	G	3.700e^-5	0.628	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
2L	17169777	2L_17169777_SNP [dm3] 2L_17169777_SNP [dm6]	T	A	3.756e^-5	0.632	INTRON beat-IIIa & 1 other
3L	10699469	3L_10699469_DEL [dm3] 3L_10706369_DEL [dm6]	AGGTAAAAACG...	A	3.794e^-5	0.632	INTERGENIC
X	5989421	X_5989421_SNP [dm3] X_6095388_SNP [dm6]	T	C	3.846e^-5	0.633	INTRON Nep1
3L	13259987	3L_13259987_SNP [dm3] 3L_13266887_SNP [dm6]	C	G	3.930e^-5	0.633	INTRON caps	TF binding site BDTNP1_TFBS_twi
2R	3740457	2R_3740457_SNP [dm3] 2R_7852952_SNP [dm6]	A	G	4.008e^-5	0.633	INTRON Dgk
2L	7902324	2L_7902324_SNP [dm3] 2L_7902324_SNP [dm6]	G	A	4.016e^-5	0.633	INTRON Snoo
3R	27183877	3R_27183877_SNP [dm3] 3R_31358155_SNP [dm6]	C	T	4.025e^-5	0.633	INTRON CG34347
2R	4909776	2R_4909776_SNP [dm3] 2R_9022271_SNP [dm6]	A	G	4.045e^-5	0.633	SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16883382	3L_16883382_SNP [dm3] 3L_16890282_SNP [dm6]	T	C	4.048e^-5	0.633	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2R	5358261	2R_5358261_SNP [dm3] 2R_9470756_SNP [dm6]	G	T	4.080e^-5	0.633	INTRON Camta
X	5588305	X_5588305_SNP [dm3] X_5694272_SNP [dm6]	G	A	4.130e^-5	0.636	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	22838563	3L_22838563_SNP [dm3] 3L_22845463_SNP [dm6]	G	T	4.200e^-5	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14221427	3L_14221427_SNP [dm3] 3L_14228327_SNP [dm6]	T	G	4.383e^-5	0.655	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
2L	562813	2L_562813_SNP [dm3] 2L_562813_SNP [dm6]	T	C	4.384e^-5	0.655	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	26501104	3R_26501104_SNP [dm3] 3R_30675382_SNP [dm6]	G	T	4.402e^-5	0.655	INTERGENIC
2R	10709522	2R_10709522_SNP [dm3] 2R_14822017_SNP [dm6]	C	T	4.486e^-5	0.663	INTERGENIC
3R	25980233	3R_25980233_SNP [dm3] 3R_30154511_SNP [dm6]	A	G	4.547e^-5	0.666	INTRON CG11498	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14503621	3R_14503621_SNP [dm3] 3R_18677899_SNP [dm6]	T	C	4.658e^-5	0.677	UTR_5_PRIME CG7706 UPSTREAM CG7705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
3L	13491932	3L_13491932_SNP [dm3] 3L_13498832_SNP [dm6]	G	C	4.733e^-5	0.682	INTRON Tgi
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	4.936e^-5	0.697	INTRON VAChT & 1 other
2R	13576478	2R_13576478_SNP [dm3] 2R_17688973_SNP [dm6]	T	G	4.975e^-5	0.697	SYNONYMOUS_CODING HPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13576517	2R_13576517_SNP [dm3] 2R_17689012_SNP [dm6]	T	C	4.975e^-5	0.697	SYNONYMOUS_CODING HPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3937423	2L_3937423_SNP [dm3] 2L_3937423_SNP [dm6]	C	G	5.012e^-5	0.697	INTRON fred
3L	18128554	3L_18128554_SNP [dm3] 3L_18135454_SNP [dm6]	G	T	5.046e^-5	0.697	DOWNSTREAM CR44669 INTERGENIC
3L	7411560	3L_7411560_SNP [dm3] 3L_7418460_SNP [dm6]	C	T	5.090e^-5	0.697	INTERGENIC
2R	17180802	2R_17180802_SNP [dm3] 2R_21293297_SNP [dm6]	G	C	5.139e^-5	0.697	UPSTREAM RpL29 INTRON Sgf29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19794987	2R_19794987_SNP [dm3] 2R_23907464_SNP [dm6]	A	G	5.165e^-5	0.697	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22814171	3L_22814171_SNP [dm3] 3L_22821071_SNP [dm6]	C	T	5.221e^-5	0.697	INTRON jim
3L	22814360	3L_22814360_SNP [dm3] 3L_22821260_SNP [dm6]	T	A	5.221e^-5	0.697	INTRON jim
2R	19794942	2R_19794942_SNP [dm3] 2R_23907419_SNP [dm6]	T	G	5.331e^-5	0.707	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8030452	3L_8030452_SNP [dm3] 3L_8037352_SNP [dm6]	C	T	5.458e^-5	0.719	INTRON nmo	TF binding site mE1_TFBS_inv
2R	3830411	2R_3830411_SNP [dm3] 2R_7942906_SNP [dm6]	A	T	5.545e^-5	0.719	UPSTREAM CG34430 INTRON CG14764
3L	19365730	3L_19365730_SNP [dm3] 3L_19372630_SNP [dm6]	T	A	5.547e^-5	0.719	INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	10958807	3L_10958807_SNP [dm3] 3L_10965707_SNP [dm6]	A	C	5.615e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	15001899	3R_15001899_SNP [dm3] 3R_19176177_SNP [dm6]	C	T	5.617e^-5	0.719	UPSTREAM CG14282 INTERGENIC
2R	3740792	2R_3740792_SNP [dm3] 2R_7853287_SNP [dm6]	T	C	5.671e^-5	0.72	INTRON Dgk
2R	16746513	2R_16746513_SNP [dm3] 2R_20859008_SNP [dm6]	T	G	5.980e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7411348	3L_7411348_SNP [dm3] 3L_7418248_SNP [dm6]	T	C	5.980e^-5	0.733	INTERGENIC
2L	13188975	2L_13188975_SNP [dm3] 2L_13188975_SNP [dm6]	C	T	6.003e^-5	0.733	NON_SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	562553	2L_562553_SNP [dm3] 2L_562553_SNP [dm6]	C	A	6.051e^-5	0.733	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3L	18087379	3L_18087379_SNP [dm3] 3L_18094279_SNP [dm6]	G	A	6.119e^-5	0.733	INTRON CG13698
3L	6311421	3L_6311421_SNP [dm3] 3L_6318321_SNP [dm6]	G	A	6.133e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs
2R	14188403	2R_14188403_SNP [dm3] 2R_18300898_SNP [dm6]	A	T	6.133e^-5	0.733	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2R	14188477	2R_14188477_DEL [dm3] 2R_18300972_DEL [dm6]	TACCAAATCATGT...	T	6.133e^-5	0.733	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14188492	2R_14188492_SNP [dm3] 2R_18300987_SNP [dm6]	C	G	6.133e^-5	0.733	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18644183	3L_18644183_SNP [dm3] 3L_18651083_SNP [dm6]	C	G	6.232e^-5	0.74	INTRON MYPT-75D
2L	21869287	2L_21869287_SNP [dm3] 2L_21869287_SNP [dm6]	C	T	6.332e^-5	0.747	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5662750	2L_5662750_SNP [dm3] 2L_5662750_SNP [dm6]	C	T	6.536e^-5	0.755	UPSTREAM Hsp60C & 1 other INTERGENIC
2L	14400199	2L_14400199_SNP [dm3] 2L_14400199_SNP [dm6]	G	C	6.555e^-5	0.755	INTRON elB
2L	14400252	2L_14400252_SNP [dm3] 2L_14400252_SNP [dm6]	A	G	6.555e^-5	0.755	INTRON elB
3L	1320726	3L_1320726_DEL [dm3] 3L_1320726_DEL [dm6]	TCTTACCTAGT...	T	6.568e^-5	0.755	UPSTREAM Myo61F INTRON Myo61F
3R	13638861	3R_13638861_SNP [dm3] 3R_17813139_SNP [dm6]	T	C	6.748e^-5	0.767	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	22835069	3L_22835069_SNP [dm3] 3L_22841969_SNP [dm6]	C	A	6.916e^-5	0.767	DOWNSTREAM CR45659 INTERGENIC
3L	14329187	3L_14329187_SNP [dm3] 3L_14336087_SNP [dm6]	A	T	7.038e^-5	0.767	INTRON fz
3R	23841549	3R_23841549_SNP [dm3] 3R_28015827_SNP [dm6]	A	G	7.199e^-5	0.767	INTERGENIC
3R	25770156	3R_25770156_SNP [dm3] 3R_29944434_SNP [dm6]	C	A	7.210e^-5	0.767	SYNONYMOUS_CODING CG15523
X	20434955	X_20434955_SNP [dm3] X_20563928_SNP [dm6]	C	T	7.418e^-5	0.767	INTRON RunxB
3L	822590	3L_822590_SNP [dm3] 3L_822590_SNP [dm6]	C	A	7.449e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27189419	3R_27189419_SNP [dm3] 3R_31363697_SNP [dm6]	C	T	7.474e^-5	0.767	INTRON CG34347
3L	13591706	3L_13591706_SNP [dm3] 3L_13598606_SNP [dm6]	G	T	7.475e^-5	0.767	UPSTREAM CR45120 INTRON bru-3
X	5404140	X_5404140_SNP [dm3] X_5510107_SNP [dm6]	G	A	7.549e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17767749	2L_17767749_SNP [dm3] 2L_17767749_SNP [dm6]	G	A	7.574e^-5	0.767	INTRON CadN
2L	562782	2L_562782_SNP [dm3] 2L_562782_SNP [dm6]	G	C	7.706e^-5	0.767	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	3979222	2L_3979222_SNP [dm3] 2L_3979222_SNP [dm6]	T	A	7.799e^-5	0.767	INTRON fred
2L	10104097	2L_10104097_SNP [dm3] 2L_10104097_SNP [dm6]	G	C	7.816e^-5	0.767	INTRON CG44153 & 1 other
3R	19120123	3R_19120123_SNP [dm3] 3R_23294401_SNP [dm6]	G	A	7.888e^-5	0.767	SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25771926	3R_25771926_SNP [dm3] 3R_29946204_SNP [dm6]	A	T	7.924e^-5	0.767	NON_SYNONYMOUS_CODING CG15523
3R	25772003	3R_25772003_SNP [dm3] 3R_29946281_SNP [dm6]	C	T	7.924e^-5	0.767	SYNONYMOUS_CODING CG15523
3L	18090533	3L_18090533_SNP [dm3] 3L_18097433_SNP [dm6]	C	T	7.974e^-5	0.767	INTRON CG13698
3R	15456373	3R_15456373_SNP [dm3] 3R_19630651_SNP [dm6]	C	A	7.974e^-5	0.767	INTRON CG6231
3R	10356713	3R_10356713_SNP [dm3] 3R_14530991_SNP [dm6]	G	A	7.995e^-5	0.767	INTRON Pde6
2L	17169779	2L_17169779_MNP [dm3] 2L_17169779_MNP [dm6]	TGC	ATT	8.008e^-5	0.767	INTRON beat-IIIa & 1 other
3R	18079031	3R_18079031_SNP [dm3] 3R_22253309_SNP [dm6]	C	T	8.045e^-5	0.767	INTRON SKIP
3L	10699678	3L_10699678_SNP [dm3] 3L_10706578_SNP [dm6]	G	T	8.178e^-5	0.767	INTERGENIC
3L	10699713	3L_10699713_DEL [dm3] 3L_10706613_DEL [dm6]	ATAAGTC	A	8.178e^-5	0.767	INTERGENIC
3L	10699721	3L_10699721_DEL [dm3] 3L_10706621_DEL [dm6]	TGTGTATATAATG...	T	8.178e^-5	0.767	INTERGENIC
3L	10699737	3L_10699737_SNP [dm3] 3L_10706637_SNP [dm6]	A	C	8.178e^-5	0.767	INTERGENIC
3L	10699741	3L_10699741_DEL [dm3] 3L_10706641_DEL [dm6]	ACAAGGTTCTTTCAT...	A	8.178e^-5	0.767	INTERGENIC
3L	10699757	3L_10699757_SNP [dm3] 3L_10706657_SNP [dm6]	A	G	8.178e^-5	0.767	INTERGENIC
3L	10699760	3L_10699760_SNP [dm3] 3L_10706660_SNP [dm6]	G	T	8.178e^-5	0.767	INTERGENIC
3L	10699766	3L_10699766_DEL [dm3] 3L_10706666_DEL [dm6]	AAATCTAAAAATATTAAACC...	A	8.178e^-5	0.767	INTERGENIC
3L	10699790	3L_10699790_DEL [dm3] 3L_10706690_DEL [dm6]	GAAAAC	G	8.178e^-5	0.767	INTERGENIC
3L	10699799	3L_10699799_DEL [dm3] 3L_10706699_DEL [dm6]	AAATTTACATTCTGTA...	A	8.178e^-5	0.767	INTERGENIC
3L	10699818	3L_10699818_SNP [dm3] 3L_10706718_SNP [dm6]	G	C	8.178e^-5	0.767	INTERGENIC
3L	10699822	3L_10699822_DEL [dm3] 3L_10706722_DEL [dm6]	TG	A	8.178e^-5	0.767	INTERGENIC
3L	10699827	3L_10699827_DEL [dm3] 3L_10706727_DEL [dm6]	ATCCA	A	8.178e^-5	0.767	INTERGENIC
3L	15202167	3L_15202167_SNP [dm3] 3L_15209067_SNP [dm6]	T	A	8.258e^-5	0.767	DOWNSTREAM CG6888 INTERGENIC
3L	15202170	3L_15202170_SNP [dm3] 3L_15209070_SNP [dm6]	C	A	8.258e^-5	0.767	DOWNSTREAM CG6888 INTERGENIC
3R	15208949	3R_15208949_SNP [dm3] 3R_19383227_SNP [dm6]	T	A	8.318e^-5	0.767	INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13240223	3R_13240223_SNP [dm3] 3R_17414501_SNP [dm6]	G	T	8.337e^-5	0.767	UTR_3_PRIME CG42822 DOWNSTREAM CG42821
X	14043813	X_14043813_SNP [dm3] X_14149780_SNP [dm6]	G	A	8.398e^-5	0.767	INTERGENIC
2R	3739769	2R_3739769_SNP [dm3] 2R_7852264_SNP [dm6]	A	G	8.399e^-5	0.767	SPLICE_SITE_DONOR Dgk INTRON Dgk
2R	14927652	2R_14927652_SNP [dm3] 2R_19040147_SNP [dm6]	C	T	8.497e^-5	0.77	INTERGENIC
3L	14627004	3L_14627004_SNP [dm3] 3L_14633904_SNP [dm6]	C	A	8.524e^-5	0.77	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	25769991	3R_25769991_SNP [dm3] 3R_29944269_SNP [dm6]	C	A	8.681e^-5	0.778	SYNONYMOUS_CODING CG15523
2R	19794941	2R_19794941_SNP [dm3] 2R_23907418_SNP [dm6]	T	G	8.691e^-5	0.778	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15728410	2L_15728410_SNP [dm3] 2L_15728410_SNP [dm6]	G	C	8.861e^-5	0.781	UTR_3_PRIME CycE
X	2214728	X_2214728_SNP [dm3] X_2320695_SNP [dm6]	A	T	8.907e^-5	0.781	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6864632	3R_6864632_SNP [dm3] 3R_11038910_SNP [dm6]	A	G	8.915e^-5	0.781	INTRON CG34114	TF binding site mE1_TFBS_inv
3L	5057163	3L_5057163_SNP [dm3] 3L_5057163_SNP [dm6]	C	A	8.929e^-5	0.781	INTRON Con
3L	13491865	3L_13491865_SNP [dm3] 3L_13498765_SNP [dm6]	C	A	8.947e^-5	0.781	INTRON Tgi
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	9.034e^-5	0.785	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10755820	3R_10755820_SNP [dm3] 3R_14930098_SNP [dm6]	T	G	9.223e^-5	0.793	INTERGENIC
3R	14351502	3R_14351502_SNP [dm3] 3R_18525780_SNP [dm6]	G	C	9.389e^-5	0.793	INTRON fru
X	20685275	X_20685275_DEL [dm3] X_20814248_DEL [dm6]	GGGTCACGGAATTCTCTTTT...	G	9.389e^-5	0.793	INTRON shakB
X	20685424	X_20685424_INS [dm3] X_20814397_INS [dm6]	T	GGAAA	9.389e^-5	0.793	INTRON shakB
X	20685426	X_20685426_SNP [dm3] X_20814399_SNP [dm6]	C	A	9.389e^-5	0.793	INTRON shakB
X	20685435	X_20685435_SNP [dm3] X_20814408_SNP [dm6]	G	A	9.389e^-5	0.793	INTRON shakB
2R	17941902	2R_17941902_SNP [dm3] 2R_22054397_SNP [dm6]	G	C	9.481e^-5	0.797	INTERGENIC
2R	6073800	2R_6073800_SNP [dm3] 2R_10186295_SNP [dm6]	G	T	9.673e^-5	0.804	INTRON KCNQ
3R	25969816	3R_25969816_SNP [dm3] 3R_30144094_SNP [dm6]	A	G	9.679e^-5	0.804	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16233282	3R_16233282_SNP [dm3] 3R_20407560_SNP [dm6]	T	G	9.697e^-5	0.804	NON_SYNONYMOUS_CODING CG4335 UPSTREAM CG10881 INTRON Gfrl
3R	10194614	3R_10194614_SNP [dm3] 3R_14368892_SNP [dm6]	T	A	9.788e^-5	0.808	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3023485	3L_3023485_SNP [dm3] 3L_3023485_SNP [dm6]	G	A	9.898e^-5	0.811	DOWNSTREAM aly INTERGENIC
2R	13802927	2R_13802927_SNP [dm3] 2R_17915422_SNP [dm6]	A	G	9.906e^-5	0.811	SYNONYMOUS_CODING Elk
3L	12033721	3L_12033721_DEL [dm3] 3L_12040621_DEL [dm6]	GTCTTCAG	G	1.024e^-4	0.834	INTRON rols
3R	25772168	3R_25772168_SNP [dm3] 3R_29946446_SNP [dm6]	G	A	1.029e^-4	0.834	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3R	16233343	3R_16233343_SNP [dm3] 3R_20407621_SNP [dm6]	A	C	1.035e^-4	0.835	UPSTREAM CG10881 INTRON Gfrl & 1 other
3R	26747691	3R_26747691_SNP [dm3] 3R_30921969_SNP [dm6]	C	T	1.039e^-4	0.835	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5870381	X_5870381_SNP [dm3] X_5976348_SNP [dm6]	A	G	1.060e^-4	0.848	INTRON Grip
3R	24468485	3R_24468485_SNP [dm3] 3R_28642763_SNP [dm6]	T	C	1.067e^-4	0.85	SYNONYMOUS_CODING CG14062	TF binding site mE1_TFBS_cad
X	8093740	X_8093740_SNP [dm3] X_8199707_SNP [dm6]	C	A	1.093e^-4	0.867	INTRON sdt
X	17143774	X_17143774_SNP [dm3] X_17249741_SNP [dm6]	G	A	1.109e^-4	0.872	UPSTREAM CG8675 INTRON f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	1.109e^-4	0.872	DOWNSTREAM mir-87 INTERGENIC
2L	7902048	2L_7902048_SNP [dm3] 2L_7902048_SNP [dm6]	T	A	1.126e^-4	0.88	INTRON Snoo
X	6525415	X_6525415_SNP [dm3] X_6631382_SNP [dm6]	G	A	1.141e^-4	0.88	INTRON pigs
2R	4148986	2R_4148986_SNP [dm3] 2R_8261481_SNP [dm6]	C	A	1.142e^-4	0.88	UPSTREAM CG2291 DOWNSTREAM CG14759 INTERGENIC
3R	5867251	3R_5867251_SNP [dm3] 3R_10041529_SNP [dm6]	A	G	1.143e^-4	0.88	INTRON Mical
3L	9760525	3L_9760525_SNP [dm3] 3L_9767425_SNP [dm6]	G	T	1.161e^-4	0.88	INTRON CG8177
3L	15701937	3L_15701937_SNP [dm3] 3L_15708837_SNP [dm6]	A	G	1.162e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11858563	3R_11858563_SNP [dm3] 3R_16032841_SNP [dm6]	C	A	1.166e^-4	0.88	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5588318	X_5588318_SNP [dm3] X_5694285_SNP [dm6]	G	A	1.176e^-4	0.88	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14627093	3L_14627093_SNP [dm3] 3L_14633993_SNP [dm6]	T	C	1.178e^-4	0.88	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	12028219	3L_12028219_SNP [dm3] 3L_12035119_SNP [dm6]	G	A	1.180e^-4	0.88	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	25778249	3R_25778249_SNP [dm3] 3R_29952527_SNP [dm6]	T	A	1.183e^-4	0.88	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
2L	9614505	2L_9614505_SNP [dm3] 2L_9614505_SNP [dm6]	T	G	1.185e^-4	0.88	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl
X	5118954	X_5118954_SNP [dm3] X_5224921_SNP [dm6]	C	T	1.186e^-4	0.88	INTRON CG15465 & 1 other
3R	25765239	3R_25765239_SNP [dm3] 3R_29939517_SNP [dm6]	C	T	1.201e^-4	0.88	NON_SYNONYMOUS_CODING CG15523
3R	26410955	3R_26410955_SNP [dm3] 3R_30585233_SNP [dm6]	A	G	1.204e^-4	0.88	INTRON CG9717	TF binding site mE1_TFBS_cad
X	17278924	X_17278924_SNP [dm3] X_17384891_SNP [dm6]	A	C	1.208e^-4	0.88	INTERGENIC
3R	11622700	3R_11622700_INS [dm3] 3R_15796978_INS [dm6]	G	GG	1.213e^-4	0.88	INTRON nsl1
X	20434973	X_20434973_SNP [dm3] X_20563946_SNP [dm6]	C	T	1.216e^-4	0.88	INTRON RunxB
X	18639411	X_18639411_SNP [dm3] X_18745378_SNP [dm6]	C	A	1.216e^-4	0.88	DOWNSTREAM CG12609 INTERGENIC
2R	14502022	2R_14502022_SNP [dm3] 2R_18614517_SNP [dm6]	A	G	1.216e^-4	0.88	SYNONYMOUS_CODING mRpS28 UPSTREAM CG5323 DOWNSTREAM CG10927	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19120142	3R_19120142_SNP [dm3] 3R_23294420_SNP [dm6]	C	G	1.243e^-4	0.893	NON_SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3289818	3L_3289818_SNP [dm3] 3L_3289818_SNP [dm6]	A	T	1.252e^-4	0.893	INTRON CG12017
2L	15249199	2L_15249199_SNP [dm3] 2L_15249199_SNP [dm6]	G	A	1.258e^-4	0.893	NON_SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10699694	3L_10699694_SNP [dm3] 3L_10706594_SNP [dm6]	C	T	1.259e^-4	0.893	INTERGENIC
2R	16361205	2R_16361205_SNP [dm3] 2R_20473700_SNP [dm6]	T	G	1.261e^-4	0.893	INTRON CG12484
2L	3790326	2L_3790326_DEL [dm3] 2L_3790326_DEL [dm6]	CT	C	1.263e^-4	0.893	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1856402	2L_1856402_SNP [dm3] 2L_1856402_SNP [dm6]	C	T	1.277e^-4	0.896	INTRON wry
2L	8010629	2L_8010629_SNP [dm3] 2L_8010629_SNP [dm6]	G	A	1.288e^-4	0.896	NON_SYNONYMOUS_CODING CG34010 UPSTREAM Tg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	16059655	2R_16059655_INS [dm3] 2R_20172150_INS [dm6]	G	GG	1.290e^-4	0.896	INTERGENIC
X	17258221	X_17258221_SNP [dm3] X_17364188_SNP [dm6]	T	A	1.291e^-4	0.896	INTERGENIC
3L	2339911	3L_2339911_SNP [dm3] 3L_2339911_SNP [dm6]	A	G	1.292e^-4	0.896	INTRON MsR1
2R	16746472	2R_16746472_SNP [dm3] 2R_20858967_SNP [dm6]	T	C	1.311e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5870384	X_5870384_SNP [dm3] X_5976351_SNP [dm6]	C	T	1.314e^-4	0.897	INTRON Grip
X	7075439	X_7075439_SNP [dm3] X_7181406_SNP [dm6]	C	T	1.321e^-4	0.897	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_inv
2L	9613880	2L_9613880_SNP [dm3] 2L_9613880_SNP [dm6]	C	A	1.324e^-4	0.897	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3R	3600154	3R_3600154_SNP [dm3] 3R_7774432_SNP [dm6]	T	C	1.328e^-4	0.897	INTERGENIC
2L	16375537	2L_16375537_SNP [dm3] 2L_16375537_SNP [dm6]	C	A	1.329e^-4	0.897	INTERGENIC
3R	26411197	3R_26411197_SNP [dm3] 3R_30585475_SNP [dm6]	A	G	1.330e^-4	0.897	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad
3R	23596041	3R_23596041_SNP [dm3] 3R_27770319_SNP [dm6]	A	G	1.338e^-4	0.897	INTRON CG34353	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16233311	3R_16233311_SNP [dm3] 3R_20407589_SNP [dm6]	C	G	1.343e^-4	0.897	UPSTREAM CG10881 INTRON Gfrl & 1 other
3R	16233328	3R_16233328_SNP [dm3] 3R_20407606_SNP [dm6]	G	A	1.343e^-4	0.897	UPSTREAM CG10881 INTRON Gfrl & 1 other
2L	8092566	2L_8092566_SNP [dm3] 2L_8092566_SNP [dm6]	T	A	1.361e^-4	0.906	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10441068	2L_10441068_SNP [dm3] 2L_10441068_SNP [dm6]	A	T	1.374e^-4	0.911	DOWNSTREAM CG13142 & 1 other INTERGENIC
2R	4925009	2R_4925009_SNP [dm3] 2R_9037504_SNP [dm6]	T	C	1.385e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13240236	3R_13240236_SNP [dm3] 3R_17414514_SNP [dm6]	G	A	1.386e^-4	0.911	UTR_3_PRIME CG42822 DOWNSTREAM CG42821
2R	9015829	2R_9015829_SNP [dm3] 2R_13128324_SNP [dm6]	T	G	1.391e^-4	0.911	SYNONYMOUS_CODING CG3955	TF binding site mE1_TFBS_cad
3L	22961179	3L_22961179_SNP [dm3] 3L_22968079_SNP [dm6]	A	G	1.394e^-4	0.911	INTERGENIC	transposable element FlyBase
2R	13803017	2R_13803017_SNP [dm3] 2R_17915512_SNP [dm6]	G	A	1.405e^-4	0.911	INTRON Elk
2L	3446290	2L_3446290_SNP [dm3] 2L_3446290_SNP [dm6]	G	C	1.407e^-4	0.911	INTRON CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13239909	3R_13239909_SNP [dm3] 3R_17414187_SNP [dm6]	G	A	1.410e^-4	0.911	SYNONYMOUS_CODING CG42822 DOWNSTREAM CG42821
3R	2351021	3R_2351021_SNP [dm3] 3R_6525299_SNP [dm6]	G	C	1.424e^-4	0.917	INTERGENIC
2R	8641327	2R_8641327_SNP [dm3] 2R_12753822_SNP [dm6]	A	G	1.440e^-4	0.917	SPLICE_SITE_REGION Taz UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	22837572	3L_22837572_SNP [dm3] 3L_22844472_SNP [dm6]	A	G	1.445e^-4	0.917	INTERGENIC
3L	9596812	3L_9596812_SNP [dm3] 3L_9603712_SNP [dm6]	T	A	1.451e^-4	0.917	UTR_5_PRIME CG3280
3L	16261529	3L_16261529_SNP [dm3] 3L_16268429_SNP [dm6]	T	G	1.453e^-4	0.917	UPSTREAM CG4950 & 1 other INTERGENIC
3R	23841547	3R_23841547_SNP [dm3] 3R_28015825_SNP [dm6]	T	G	1.466e^-4	0.917	INTERGENIC
X	14560754	X_14560754_SNP [dm3] X_14666721_SNP [dm6]	T	C	1.476e^-4	0.917	INTERGENIC
2R	3721363	2R_3721363_SNP [dm3] 2R_7833858_SNP [dm6]	T	A	1.477e^-4	0.917	DOWNSTREAM Dgk & 1 other INTRON Atg10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10352938	3R_10352938_SNP [dm3] 3R_14527216_SNP [dm6]	T	C	1.487e^-4	0.917	INTRON Pde6
2R	12147899	2R_12147899_SNP [dm3] 2R_16260394_SNP [dm6]	A	G	1.492e^-4	0.917	UPSTREAM CngA INTERGENIC
3R	26398119	3R_26398119_SNP [dm3] 3R_30572397_SNP [dm6]	A	C	1.493e^-4	0.917	SYNONYMOUS_CODING tmod	TF binding site mE1_TFBS_sens
3R	26398131	3R_26398131_SNP [dm3] 3R_30572409_SNP [dm6]	T	C	1.493e^-4	0.917	SYNONYMOUS_CODING tmod	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9997887	3L_9997887_SNP [dm3] 3L_10004787_SNP [dm6]	T	G	1.494e^-4	0.917	INTRON dpr6
3L	9997894	3L_9997894_SNP [dm3] 3L_10004794_SNP [dm6]	T	C	1.494e^-4	0.917	INTRON dpr6
3L	9997961	3L_9997961_SNP [dm3] 3L_10004861_SNP [dm6]	C	T	1.494e^-4	0.917	INTRON dpr6
2R	5408220	2R_5408220_SNP [dm3] 2R_9520715_SNP [dm6]	G	A	1.503e^-4	0.919	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1300127	3L_1300127_SNP [dm3] 3L_1300127_SNP [dm6]	C	T	1.517e^-4	0.925	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20799997	3R_20799997_DEL [dm3] 3R_24974275_DEL [dm6]	TGAGTTCCT	T	1.529e^-4	0.927	INTERGENIC
3R	26495978	3R_26495978_SNP [dm3] 3R_30670256_SNP [dm6]	G	T	1.530e^-4	0.927	INTERGENIC
3R	26420876	3R_26420876_SNP [dm3] 3R_30595154_SNP [dm6]	G	A	1.547e^-4	0.933	SYNONYMOUS_CODING CG2246
3R	13240331	3R_13240331_SNP [dm3] 3R_17414609_SNP [dm6]	A	G	1.550e^-4	0.933	DOWNSTREAM CG42821 & 1 other INTERGENIC
3L	22835751	3L_22835751_SNP [dm3] 3L_22842651_SNP [dm6]	A	G	1.571e^-4	0.935	UPSTREAM tRNA:CR32456 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26063014	3R_26063014_SNP [dm3] 3R_30237292_SNP [dm6]	G	A	1.583e^-4	0.935	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3645050	2L_3645050_SNP [dm3] 2L_3645050_SNP [dm6]	G	C	1.584e^-4	0.935	INTRON for
3R	27203674	3R_27203674_SNP [dm3] 3R_31377952_SNP [dm6]	G	T	1.586e^-4	0.935	INTERGENIC
2L	10049753	2L_10049753_SNP [dm3] 2L_10049753_SNP [dm6]	C	G	1.589e^-4	0.935	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13240289	3R_13240289_SNP [dm3] 3R_17414567_SNP [dm6]	T	C	1.590e^-4	0.935	UTR_3_PRIME CG42822 DOWNSTREAM CG42821
3R	18079027	3R_18079027_SNP [dm3] 3R_22253305_SNP [dm6]	G	T	1.594e^-4	0.935	INTRON SKIP
X	21067344	X_21067344_SNP [dm3] X_21196317_SNP [dm6]	G	A	1.595e^-4	0.935	INTERGENIC
3R	16233357	3R_16233357_SNP [dm3] 3R_20407635_SNP [dm6]	C	A	1.604e^-4	0.935	NON_SYNONYMOUS_CODING CG4335 SPLICE_SITE_REGION CG4335 UPSTREAM CG10881 INTRON Gfrl
3L	7103571	3L_7103571_SNP [dm3] 3L_7110471_SNP [dm6]	G	A	1.606e^-4	0.935	INTRON form3
3L	10678959	3L_10678959_SNP [dm3] 3L_10685859_SNP [dm6]	T	C	1.629e^-4	0.944	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14329167	3L_14329167_SNP [dm3] 3L_14336067_SNP [dm6]	T	C	1.635e^-4	0.944	INTRON fz
X	7075192	X_7075192_SNP [dm3] X_7181159_SNP [dm6]	G	A	1.655e^-4	0.944	INTRON CG9650 & 1 other
2L	9204785	2L_9204785_SNP [dm3] 2L_9204785_SNP [dm6]	A	T	1.661e^-4	0.944	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14681627	3L_14681627_SNP [dm3] 3L_14688527_SNP [dm6]	T	C	1.662e^-4	0.944	INTRON ome
X	12955420	X_12955420_SNP [dm3] X_13061387_SNP [dm6]	G	C	1.678e^-4	0.944	UPSTREAM mir-971 INTRON rad
2R	8604623	2R_8604623_SNP [dm3] 2R_12717118_SNP [dm6]	T	G	1.679e^-4	0.944	INTRON CG42663	TF binding site mE1_TFBS_inv
2L	14843887	2L_14843887_SNP [dm3] 2L_14843887_SNP [dm6]	A	G	1.682e^-4	0.944	DOWNSTREAM CG42682 INTERGENIC
3L	16052921	3L_16052921_SNP [dm3] 3L_16059821_SNP [dm6]	T	A	1.694e^-4	0.944	INTRON Mbs
2L	14473360	2L_14473360_SNP [dm3] 2L_14473360_SNP [dm6]	G	C	1.700e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	26410962	3R_26410962_SNP [dm3] 3R_30585240_SNP [dm6]	C	A	1.701e^-4	0.944	INTRON CG9717	TF binding site mE1_TFBS_cad
2R	8642284	2R_8642284_SNP [dm3] 2R_12754779_SNP [dm6]	T	G	1.707e^-4	0.944	INTRON Taz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5818606	X_5818606_SNP [dm3] X_5924573_SNP [dm6]	T	A	1.716e^-4	0.944	INTRON CG3726
2R	17132293	2R_17132293_INS [dm3] 2R_21244788_INS [dm6]	C	CC	1.722e^-4	0.944	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
3L	6325131	3L_6325131_SNP [dm3] 3L_6332031_SNP [dm6]	G	T	1.728e^-4	0.944	INTRON CG13300	TF binding site mE1_TFBS_chinmo
2L	9204760	2L_9204760_SNP [dm3] 2L_9204760_SNP [dm6]	T	G	1.737e^-4	0.944	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14286679	3R_14286679_SNP [dm3] 3R_18460957_SNP [dm6]	C	T	1.754e^-4	0.944	INTRON fru
3L	13955853	3L_13955853_SNP [dm3] 3L_13962753_SNP [dm6]	G	A	1.757e^-4	0.944	UTR_3_PRIME Meics DOWNSTREAM CG32137
3R	27614138	3R_27614138_SNP [dm3] 3R_31788416_SNP [dm6]	G	T	1.769e^-4	0.944	DOWNSTREAM faf INTRON faf	TF binding site mE1_TFBS_cad
2R	1244813	2R_1244813_MNP [dm3] 2R_5357308_MNP [dm6]	ATT	GCC	1.773e^-4	0.944	INTERGENIC
3L	14221218	3L_14221218_DEL [dm3] 3L_14228118_DEL [dm6]	CAGAAACC	C	1.792e^-4	0.944	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14221316	3L_14221316_INS [dm3] 3L_14228216_INS [dm6]	T	TC	1.792e^-4	0.944	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
2R	13231666	2R_13231666_SNP [dm3] 2R_17344161_SNP [dm6]	C	T	1.794e^-4	0.944	INTRON mbl
3L	18304661	3L_18304661_SNP [dm3] 3L_18311561_SNP [dm6]	T	C	1.798e^-4	0.944	INTERGENIC
2L	2119915	2L_2119915_DEL [dm3] 2L_2119915_DEL [dm6]	AAAATAT	A	1.802e^-4	0.944	INTERGENIC
3L	7411537	3L_7411537_SNP [dm3] 3L_7418437_SNP [dm6]	A	T	1.804e^-4	0.944	INTERGENIC
2R	14188474	2R_14188474_SNP [dm3] 2R_18300969_SNP [dm6]	A	G	1.812e^-4	0.944	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3024162	3L_3024162_SNP [dm3] 3L_3024162_SNP [dm6]	A	C	1.817e^-4	0.944	UTR_3_PRIME aly DOWNSTREAM aly
X	6687540	X_6687540_INS [dm3] X_6793507_INS [dm6]	A	AT	1.820e^-4	0.944	INTRON C3G
3L	22837737	3L_22837737_SNP [dm3] 3L_22844637_SNP [dm6]	T	G	1.822e^-4	0.944	INTERGENIC
2L	10420371	2L_10420371_DEL [dm3] 2L_10420371_DEL [dm6]	AGTCAA	A	1.834e^-4	0.944	DOWNSTREAM pie INTRON RfC3
2L	10420397	2L_10420397_SNP [dm3] 2L_10420397_SNP [dm6]	A	G	1.834e^-4	0.944	DOWNSTREAM pie INTRON RfC3
2L	10420402	2L_10420402_SNP [dm3] 2L_10420402_SNP [dm6]	T	G	1.834e^-4	0.944	SPLICE_SITE_REGION RfC3 SYNONYMOUS_CODING RfC3 DOWNSTREAM pie
3L	12897467	3L_12897467_SNP [dm3] 3L_12904367_SNP [dm6]	G	A	1.838e^-4	0.944	UPSTREAM CG32117 INTERGENIC
2R	4925803	2R_4925803_SNP [dm3] 2R_9038298_SNP [dm6]	G	A	1.839e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18538851	3L_18538851_SNP [dm3] 3L_18545751_SNP [dm6]	G	A	1.841e^-4	0.944	INTERGENIC
X	21067313	X_21067313_SNP [dm3] X_21196286_SNP [dm6]	C	T	1.850e^-4	0.944	INTERGENIC
2L	15728284	2L_15728284_SNP [dm3] 2L_15728284_SNP [dm6]	A	G	1.865e^-4	0.944	UTR_3_PRIME CycE
3L	19365885	3L_19365885_SNP [dm3] 3L_19372785_SNP [dm6]	T	C	1.874e^-4	0.944	INTRON CG32206	TF binding site BDTNP1_TFBS_Med
3R	8502732	3R_8502732_SNP [dm3] 3R_12677010_SNP [dm6]	C	A	1.874e^-4	0.944	SYNONYMOUS_CODING mbo UPSTREAM CG43630 DOWNSTREAM CG6188	TF binding site mE1_TFBS_cad
3L	13491896	3L_13491896_SNP [dm3] 3L_13498796_SNP [dm6]	A	G	1.876e^-4	0.944	INTRON Tgi
3R	26747842	3R_26747842_SNP [dm3] 3R_30922120_SNP [dm6]	T	C	1.880e^-4	0.944	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18304785	3L_18304785_MNP [dm3] 3L_18311685_MNP [dm6]	TAT	ATG	1.898e^-4	0.944	INTERGENIC
3L	18304821	3L_18304821_SNP [dm3] 3L_18311721_SNP [dm6]	A	T	1.898e^-4	0.944	INTERGENIC
3L	18304833	3L_18304833_SNP [dm3] 3L_18311733_SNP [dm6]	T	C	1.898e^-4	0.944	INTERGENIC
3L	18304853	3L_18304853_SNP [dm3] 3L_18311753_SNP [dm6]	T	C	1.898e^-4	0.944	INTERGENIC
3L	18304861	3L_18304861_SNP [dm3] 3L_18311761_SNP [dm6]	C	T	1.898e^-4	0.944	INTERGENIC
3R	25771046	3R_25771046_SNP [dm3] 3R_29945324_SNP [dm6]	G	A	1.913e^-4	0.944	INTRON CG15523
3R	23479462	3R_23479462_SNP [dm3] 3R_27653740_SNP [dm6]	G	A	1.913e^-4	0.944	DOWNSTREAM RpS10a INTRON tau
3R	9758528	3R_9758528_SNP [dm3] 3R_13932806_SNP [dm6]	T	C	1.916e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18199958	3L_18199958_SNP [dm3] 3L_18206858_SNP [dm6]	T	C	1.917e^-4	0.944	INTERGENIC
2L	14011579	2L_14011579_SNP [dm3] 2L_14011579_SNP [dm6]	G	C	1.924e^-4	0.944	UPSTREAM tRNA:Q:34E INTERGENIC
3R	10352856	3R_10352856_DEL [dm3] 3R_14527134_DEL [dm6]	CTGCACAGCGTATGGCCAAC...	A	1.925e^-4	0.944	INTRON Pde6
2L	17525334	2L_17525334_SNP [dm3] 2L_17525334_SNP [dm6]	G	A	1.940e^-4	0.944	SYNONYMOUS_CODING Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
2L	3247637	2L_3247637_DEL [dm3] 2L_3247637_DEL [dm6]	TT	T	1.952e^-4	0.944	INTERGENIC
3R	17249281	3R_17249281_SNP [dm3] 3R_21423559_SNP [dm6]	G	T	1.960e^-4	0.944	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	10075184	2L_10075184_SNP [dm3] 2L_10075184_SNP [dm6]	G	A	1.961e^-4	0.944	INTRON CG44153
2R	16059339	2R_16059339_SNP [dm3] 2R_20171834_SNP [dm6]	A	T	1.969e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	5720314	2L_5720314_DEL [dm3] 2L_5720314_DEL [dm6]	CTCTGATAAAAACGGTGACA...	C	1.975e^-4	0.944	SPLICE_SITE_REGION CG11149 UTR_5_PRIME CG11149 UPSTREAM sip1 INTRON CG11149
2R	16340036	2R_16340036_SNP [dm3] 2R_20452531_SNP [dm6]	T	A	1.984e^-4	0.944	INTRON CG12484
2R	9479641	2R_9479641_SNP [dm3] 2R_13592136_SNP [dm6]	C	A	1.989e^-4	0.944	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2351236	3R_2351236_SNP [dm3] 3R_6525514_SNP [dm6]	C	T	1.992e^-4	0.944	INTERGENIC
2R	16758274	2R_16758274_SNP [dm3] 2R_20870769_SNP [dm6]	G	A	1.995e^-4	0.944	UPSTREAM Ipk1 DOWNSTREAM IM14 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	5013309	3R_5013309_INS [dm3] 3R_9187587_INS [dm6]	T	TC	1.995e^-4	0.944	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9024381	2R_9024381_SNP [dm3] 2R_13136876_SNP [dm6]	G	T	2.002e^-4	0.944	INTRON Cap-G	TF binding site mE1_TFBS_sens
3L	4007610	3L_4007610_SNP [dm3] 3L_4007610_SNP [dm6]	T	C	2.005e^-4	0.944	DOWNSTREAM CG14985 INTERGENIC
2L	15332659	2L_15332659_SNP [dm3] 2L_15332659_SNP [dm6]	T	A	2.013e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Trl
X	12955430	X_12955430_SNP [dm3] X_13061397_SNP [dm6]	A	G	2.013e^-4	0.944	UPSTREAM mir-971 INTRON rad
3R	14032536	3R_14032536_SNP [dm3] 3R_18206814_SNP [dm6]	A	G	2.024e^-4	0.944	INTRON CG7985
3R	26811412	3R_26811412_SNP [dm3] 3R_30985690_SNP [dm6]	G	A	2.032e^-4	0.944	INTRON 5-HT7
2L	9576824	2L_9576824_DEL [dm3] 2L_9576824_DEL [dm6]	ACAGTACA	A	2.037e^-4	0.944	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13231637	2R_13231637_SNP [dm3] 2R_17344132_SNP [dm6]	A	T	2.038e^-4	0.944	INTRON mbl
2L	1672566	2L_1672566_SNP [dm3] 2L_1672566_SNP [dm6]	T	C	2.041e^-4	0.944	INTRON chinmo
3L	5212812	3L_5212812_SNP [dm3] 3L_5219712_SNP [dm6]	T	A	2.041e^-4	0.944	INTRON shep
3R	25767513	3R_25767513_SNP [dm3] 3R_29941791_SNP [dm6]	T	A	2.044e^-4	0.944	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	19369056	3L_19369056_SNP [dm3] 3L_19375956_SNP [dm6]	G	C	2.046e^-4	0.944	INTRON CG32206
X	9172527	X_9172527_SNP [dm3] X_9278494_SNP [dm6]	G	A	2.053e^-4	0.944	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5895060	X_5895060_SNP [dm3] X_6001027_SNP [dm6]	A	G	2.055e^-4	0.944	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25749283	3R_25749283_SNP [dm3] 3R_29923561_SNP [dm6]	G	A	2.060e^-4	0.944	DOWNSTREAM Jon99Cii & 1 other INTERGENIC
2L	10440997	2L_10440997_SNP [dm3] 2L_10440997_SNP [dm6]	A	G	2.069e^-4	0.944	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
2L	10441088	2L_10441088_SNP [dm3] 2L_10441088_SNP [dm6]	G	A	2.069e^-4	0.944	DOWNSTREAM CG13142 & 1 other INTERGENIC
2L	10441112	2L_10441112_SNP [dm3] 2L_10441112_SNP [dm6]	G	C	2.069e^-4	0.944	DOWNSTREAM CG13142 & 1 other INTERGENIC
2L	8649138	2L_8649138_SNP [dm3] 2L_8649138_SNP [dm6]	G	T	2.072e^-4	0.944	INTRON Sema-1a
2R	14187419	2R_14187419_SNP [dm3] 2R_18299914_SNP [dm6]	C	T	2.080e^-4	0.944	SYNONYMOUS_CODING CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27614076	3R_27614076_SNP [dm3] 3R_31788354_SNP [dm6]	T	C	2.080e^-4	0.944	DOWNSTREAM faf INTRON faf	TF binding site mE1_TFBS_cad
3L	8439706	3L_8439706_SNP [dm3] 3L_8446606_SNP [dm6]	C	T	2.101e^-4	0.944	INTRON CG6983
3L	16052911	3L_16052911_SNP [dm3] 3L_16059811_SNP [dm6]	C	T	2.104e^-4	0.944	INTRON Mbs
3L	10712295	3L_10712295_SNP [dm3] 3L_10719195_SNP [dm6]	A	T	2.106e^-4	0.944	INTERGENIC
3L	17098153	3L_17098153_SNP [dm3] 3L_17105053_SNP [dm6]	A	C	2.108e^-4	0.944	INTRON Rbp6
2R	13485063	2R_13485063_SNP [dm3] 2R_17597558_SNP [dm6]	C	T	2.109e^-4	0.944	DOWNSTREAM CG11423 INTRON lack	TF binding site BDTNP1_TFBS_twi
3R	25770599	3R_25770599_SNP [dm3] 3R_29944877_SNP [dm6]	A	C	2.111e^-4	0.944	NON_SYNONYMOUS_CODING CG15523
2R	17240574	2R_17240574_SNP [dm3] 2R_21353069_SNP [dm6]	A	G	2.118e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16059565	2R_16059565_SNP [dm3] 2R_20172060_SNP [dm6]	G	T	2.123e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_Kr
X	5276807	X_5276807_SNP [dm3] X_5382774_SNP [dm6]	C	T	2.139e^-4	0.944	INTRON SK
2R	3847451	2R_3847451_SNP [dm3] 2R_7959946_SNP [dm6]	C	T	2.145e^-4	0.944	UTR_5_PRIME CG2915 DOWNSTREAM Sep5 INTRON CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	10441143	2L_10441143_SNP [dm3] 2L_10441143_SNP [dm6]	G	A	2.158e^-4	0.944	DOWNSTREAM CG13142 & 1 other INTERGENIC
3L	10020357	3L_10020357_SNP [dm3] 3L_10027257_SNP [dm6]	T	C	2.162e^-4	0.944	INTRON dpr6
2L	7230655	2L_7230655_SNP [dm3] 2L_7230655_SNP [dm6]	A	T	2.176e^-4	0.944	INTRON Ndae1
2R	6073878	2R_6073878_SNP [dm3] 2R_10186373_SNP [dm6]	C	A	2.203e^-4	0.944	INTRON KCNQ
3R	25447005	3R_25447005_SNP [dm3] 3R_29621283_SNP [dm6]	A	G	2.206e^-4	0.944	DOWNSTREAM CG1907 INTERGENIC
2R	14188397	2R_14188397_SNP [dm3] 2R_18300892_SNP [dm6]	A	C	2.217e^-4	0.944	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	2.217e^-4	0.944	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	14410113	2L_14410113_SNP [dm3] 2L_14410113_SNP [dm6]	T	C	2.225e^-4	0.944	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	4712189	3L_4712189_SNP [dm3] 3L_4712189_SNP [dm6]	C	T	2.228e^-4	0.944	INTRON RhoGEF64C
3L	4712192	3L_4712192_SNP [dm3] 3L_4712192_SNP [dm6]	A	T	2.228e^-4	0.944	INTRON RhoGEF64C
3L	4712218	3L_4712218_SNP [dm3] 3L_4712218_SNP [dm6]	G	T	2.228e^-4	0.944	INTRON RhoGEF64C
2L	7429005	2L_7429005_SNP [dm3] 2L_7429005_SNP [dm6]	T	C	2.240e^-4	0.944	SYNONYMOUS_CODING CG5261
2R	16361176	2R_16361176_SNP [dm3] 2R_20473671_SNP [dm6]	A	G	2.249e^-4	0.944	INTRON CG12484
3L	10495364	3L_10495364_SNP [dm3] 3L_10502264_SNP [dm6]	G	A	2.250e^-4	0.944	INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	8809798	3L_8809798_SNP [dm3] 3L_8816698_SNP [dm6]	T	A	2.253e^-4	0.944	INTERGENIC
3R	26411219	3R_26411219_SNP [dm3] 3R_30585497_SNP [dm6]	G	A	2.263e^-4	0.944	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad
3L	10396311	3L_10396311_SNP [dm3] 3L_10403211_SNP [dm6]	G	A	2.270e^-4	0.944	INTERGENIC
3L	8674831	3L_8674831_SNP [dm3] 3L_8681731_SNP [dm6]	G	A	2.283e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	3638706	2R_3638706_SNP [dm3] 2R_7751201_SNP [dm6]	T	A	2.285e^-4	0.944	INTRON CG30497 & 1 other
2R	17350316	2R_17350316_SNP [dm3] 2R_21462811_SNP [dm6]	G	C	2.293e^-4	0.944	INTRON Sdc
3R	26752758	3R_26752758_SNP [dm3] 3R_30927036_SNP [dm6]	T	C	2.295e^-4	0.944	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3979145	2L_3979145_SNP [dm3] 2L_3979145_SNP [dm6]	G	A	2.298e^-4	0.944	INTRON fred
2R	8604380	2R_8604380_SNP [dm3] 2R_12716875_SNP [dm6]	T	C	2.299e^-4	0.944	INTRON CG42663
3L	13491844	3L_13491844_SNP [dm3] 3L_13498744_SNP [dm6]	A	T	2.299e^-4	0.944	INTRON Tgi
3R	25969676	3R_25969676_SNP [dm3] 3R_30143954_SNP [dm6]	C	G	2.300e^-4	0.944	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18304779	3L_18304779_SNP [dm3] 3L_18311679_SNP [dm6]	C	A	2.308e^-4	0.944	INTERGENIC
3L	16225230	3L_16225230_DEL [dm3] 3L_16232130_DEL [dm6]	AA	A	2.309e^-4	0.944	UTR_5_PRIME MED10 UPSTREAM PDCD-5 & 1 other DOWNSTREAM CG5027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16225233	3L_16225233_SNP [dm3] 3L_16232133_SNP [dm6]	A	T	2.309e^-4	0.944	UTR_5_PRIME MED10 UPSTREAM PDCD-5 & 1 other DOWNSTREAM CG5027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17296820	3R_17296820_SNP [dm3] 3R_21471098_SNP [dm6]	T	C	2.309e^-4	0.944	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18625831	3L_18625831_SNP [dm3] 3L_18632731_SNP [dm6]	T	A	2.310e^-4	0.944	INTRON MYPT-75D
3L	10017954	3L_10017954_INS [dm3] 3L_10024854_INS [dm6]	C	CCAC	2.310e^-4	0.944	INTRON dpr6
3L	18355816	3L_18355816_SNP [dm3] 3L_18362716_SNP [dm6]	T	A	2.314e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5005454	2R_5005454_SNP [dm3] 2R_9117949_SNP [dm6]	G	A	2.315e^-4	0.944	SYNONYMOUS_CODING Su_var_2-10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2617539	2L_2617539_SNP [dm3] 2L_2617539_SNP [dm6]	A	G	2.319e^-4	0.944	INTERGENIC
3L	22922170	3L_22922170_SNP [dm3] 3L_22929070_SNP [dm6]	G	T	2.328e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18304772	3L_18304772_SNP [dm3] 3L_18311672_SNP [dm6]	T	A	2.339e^-4	0.944	INTERGENIC
3L	18304778	3L_18304778_SNP [dm3] 3L_18311678_SNP [dm6]	T	A	2.339e^-4	0.944	INTERGENIC
2R	10054746	2R_10054746_SNP [dm3] 2R_14167241_SNP [dm6]	C	T	2.364e^-4	0.944	SYNONYMOUS_CODING CG18327 DOWNSTREAM CG8323	TF binding site mE1_TFBS_chinmo
3R	25765252	3R_25765252_SNP [dm3] 3R_29939530_SNP [dm6]	T	C	2.364e^-4	0.944	SYNONYMOUS_CODING CG15523
2R	16281422	2R_16281422_SNP [dm3] 2R_20393917_SNP [dm6]	C	A	2.366e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6142485	2R_6142485_SNP [dm3] 2R_10254980_SNP [dm6]	A	C	2.370e^-4	0.944	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
2L	16337977	2L_16337977_SNP [dm3] 2L_16337977_SNP [dm6]	A	C	2.379e^-4	0.944	UPSTREAM CG31817 DOWNSTREAM CG42266 INTERGENIC
2R	8635285	2R_8635285_SNP [dm3] 2R_12747780_SNP [dm6]	T	A	2.398e^-4	0.944	INTRON CG42663
3L	19360143	3L_19360143_SNP [dm3] 3L_19367043_SNP [dm6]	T	C	2.410e^-4	0.944	INTRON CG32206
3R	14575167	3R_14575167_SNP [dm3] 3R_18749445_SNP [dm6]	C	A	2.418e^-4	0.944	SYNONYMOUS_CODING gwl DOWNSTREAM CG14299
X	8549066	X_8549066_SNP [dm3] X_8655033_SNP [dm6]	T	G	2.419e^-4	0.944	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	10757661	3L_10757661_SNP [dm3] 3L_10764561_SNP [dm6]	A	C	2.426e^-4	0.944	INTERGENIC
2R	9477657	2R_9477657_SNP [dm3] 2R_13590152_SNP [dm6]	C	G	2.434e^-4	0.944	INTRON CG6191 & 1 other
2R	3739519	2R_3739519_SNP [dm3] 2R_7852014_SNP [dm6]	T	C	2.447e^-4	0.944	INTRON Dgk
2R	16960128	2R_16960128_SNP [dm3] 2R_21072623_SNP [dm6]	A	G	2.447e^-4	0.944	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2L	3509151	2L_3509151_SNP [dm3] 2L_3509151_SNP [dm6]	A	T	2.452e^-4	0.944	UTR_3_PRIME CG31954 DOWNSTREAM CR45299 EXON CR45300
3L	11174960	3L_11174960_SNP [dm3] 3L_11181860_SNP [dm6]	C	A	2.478e^-4	0.944	INTRON GlcAT-P
3L	11748386	3L_11748386_SNP [dm3] 3L_11755286_SNP [dm6]	T	C	2.478e^-4	0.944	INTRON CG6024
3R	15861191	3R_15861191_SNP [dm3] 3R_20035469_SNP [dm6]	T	C	2.482e^-4	0.944	SYNONYMOUS_CODING CG10889 DOWNSTREAM CG17193	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14765110	3R_14765110_SNP [dm3] 3R_18939388_SNP [dm6]	T	C	2.489e^-4	0.944	INTRON CG42613
2L	12690146	2L_12690146_INS [dm3] 2L_12690146_INS [dm6]	T	TAT	2.499e^-4	0.944	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
3L	14865264	3L_14865264_SNP [dm3] 3L_14872164_SNP [dm6]	C	T	2.504e^-4	0.944	INTRON CG17839
3R	27613760	3R_27613760_SNP [dm3] 3R_31788038_SNP [dm6]	C	G	2.509e^-4	0.944	SYNONYMOUS_CODING faf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4727559	2R_4727559_SNP [dm3] 2R_8840054_SNP [dm6]	A	C	2.518e^-4	0.944	INTRON sns
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	2.521e^-4	0.944	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	3849357	2R_3849357_SNP [dm3] 2R_7961852_SNP [dm6]	T	C	2.521e^-4	0.944	UTR_5_PRIME Sep5 UPSTREAM nito	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	8567695	2L_8567695_SNP [dm3] 2L_8567695_SNP [dm6]	A	G	2.529e^-4	0.944	INTRON Sema-1a
2L	8567701	2L_8567701_SNP [dm3] 2L_8567701_SNP [dm6]	T	C	2.529e^-4	0.944	INTRON Sema-1a
2L	8567709	2L_8567709_SNP [dm3] 2L_8567709_SNP [dm6]	A	G	2.529e^-4	0.944	INTRON Sema-1a
2L	8567721	2L_8567721_SNP [dm3] 2L_8567721_SNP [dm6]	A	G	2.529e^-4	0.944	INTRON Sema-1a
3L	12568774	3L_12568774_SNP [dm3] 3L_12575674_SNP [dm6]	C	T	2.561e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12568777	3L_12568777_SNP [dm3] 3L_12575677_SNP [dm6]	G	C	2.561e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10018873	2L_10018873_SNP [dm3] 2L_10018873_SNP [dm6]	C	A	2.561e^-4	0.944	INTERGENIC
3R	9497387	3R_9497387_SNP [dm3] 3R_13671665_SNP [dm6]	A	C	2.564e^-4	0.944	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25770171	3R_25770171_SNP [dm3] 3R_29944449_SNP [dm6]	C	T	2.569e^-4	0.944	SYNONYMOUS_CODING CG15523
3R	25770183	3R_25770183_SNP [dm3] 3R_29944461_SNP [dm6]	C	T	2.569e^-4	0.944	SYNONYMOUS_CODING CG15523
3R	25770287	3R_25770287_SNP [dm3] 3R_29944565_SNP [dm6]	A	G	2.569e^-4	0.944	SYNONYMOUS_CODING CG15523
2L	16821746	2L_16821746_SNP [dm3] 2L_16821746_SNP [dm6]	T	C	2.595e^-4	0.944	NON_SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
2R	6679423	2R_6679423_SNP [dm3] 2R_10791918_SNP [dm6]	C	T	2.605e^-4	0.944	SYNONYMOUS_CODING mthl13 INTRON CG33144
2R	19794859	2R_19794859_SNP [dm3] 2R_23907336_SNP [dm6]	C	A	2.610e^-4	0.944	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19795154	2R_19795154_SNP [dm3] 2R_23907631_SNP [dm6]	G	C	2.610e^-4	0.944	UPSTREAM kcc & 1 other DOWNSTREAM CR44806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25770266	3R_25770266_SNP [dm3] 3R_29944544_SNP [dm6]	G	T	2.620e^-4	0.944	INTRON CG15523
2L	7660850	2L_7660850_SNP [dm3] 2L_7660850_SNP [dm6]	C	A	2.620e^-4	0.944	INTRON Slob
3L	11192362	3L_11192362_SNP [dm3] 3L_11199262_SNP [dm6]	T	C	2.638e^-4	0.944	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
2R	16281403	2R_16281403_SNP [dm3] 2R_20393898_SNP [dm6]	G	A	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16281404	2R_16281404_SNP [dm3] 2R_20393899_SNP [dm6]	T	C	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281407	2R_16281407_INS [dm3] 2R_20393902_INS [dm6]	T	ATTTG	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281412	2R_16281412_SNP [dm3] 2R_20393907_SNP [dm6]	A	G	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281413	2R_16281413_SNP [dm3] 2R_20393908_SNP [dm6]	T	A	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281421	2R_16281421_SNP [dm3] 2R_20393916_SNP [dm6]	A	T	2.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19795100	2R_19795100_SNP [dm3] 2R_23907577_SNP [dm6]	A	G	2.654e^-4	0.944	UPSTREAM kcc & 1 other DOWNSTREAM CR44806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19795113	2R_19795113_SNP [dm3] 2R_23907590_SNP [dm6]	T	A	2.654e^-4	0.944	UPSTREAM kcc & 1 other DOWNSTREAM CR44806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3629393	2L_3629393_SNP [dm3] 2L_3629393_SNP [dm6]	C	G	2.658e^-4	0.944	INTRON for	TF binding site BDTNP1_TFBS_twi
2R	9479720	2R_9479720_SNP [dm3] 2R_13592215_SNP [dm6]	A	C	2.659e^-4	0.944	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7028507	X_7028507_SNP [dm3] X_7134474_SNP [dm6]	A	T	2.680e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	13624432	X_13624432_SNP [dm3] X_13730399_SNP [dm6]	T	C	2.682e^-4	0.944	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10283424	2L_10283424_SNP [dm3] 2L_10283424_SNP [dm6]	G	A	2.696e^-4	0.944	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26497703	3R_26497703_SNP [dm3] 3R_30671981_SNP [dm6]	T	C	2.697e^-4	0.944	INTERGENIC
2L	10440915	2L_10440915_INS [dm3] 2L_10440915_INS [dm6]	C	AG	2.698e^-4	0.944	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
2L	10440918	2L_10440918_SNP [dm3] 2L_10440918_SNP [dm6]	G	A	2.698e^-4	0.944	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
2L	10440976	2L_10440976_SNP [dm3] 2L_10440976_SNP [dm6]	A	G	2.698e^-4	0.944	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
3L	18084292	3L_18084292_SNP [dm3] 3L_18091192_SNP [dm6]	A	C	2.719e^-4	0.944	INTRON CG13698
2L	8649108	2L_8649108_SNP [dm3] 2L_8649108_SNP [dm6]	G	T	2.725e^-4	0.944	INTRON Sema-1a
3R	27622511	3R_27622511_SNP [dm3] 3R_31796789_SNP [dm6]	G	C	2.737e^-4	0.944	NON_SYNONYMOUS_CODING Acf1
3R	26410993	3R_26410993_SNP [dm3] 3R_30585271_SNP [dm6]	T	C	2.739e^-4	0.944	INTRON CG9717	TF binding site mE1_TFBS_cad
2R	3740637	2R_3740637_SNP [dm3] 2R_7853132_SNP [dm6]	G	C	2.749e^-4	0.944	INTRON Dgk
2R	3740638	2R_3740638_SNP [dm3] 2R_7853133_SNP [dm6]	G	T	2.749e^-4	0.944	INTRON Dgk
3L	11225079	3L_11225079_SNP [dm3] 3L_11231979_SNP [dm6]	C	T	2.753e^-4	0.944	UPSTREAM CR45405 DOWNSTREAM Ir68a INTERGENIC
3R	21498721	3R_21498721_SNP [dm3] 3R_25672999_SNP [dm6]	A	G	2.753e^-4	0.944	INTRON Lgr3
3R	17296808	3R_17296808_INS [dm3] 3R_21471086_INS [dm6]	A	ATCTGAAAAACAA...	2.759e^-4	0.944	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2743692	2L_2743692_SNP [dm3] 2L_2743692_SNP [dm6]	T	C	2.796e^-4	0.944	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2R	19372478	2R_19372478_SNP [dm3] 2R_23484955_SNP [dm6]	A	G	2.797e^-4	0.944	INTRON CG43795
X	4771674	X_4771674_SNP [dm3] X_4877641_SNP [dm6]	C	T	2.799e^-4	0.944	DOWNSTREAM CG12681 INTRON CG42594
3L	22835199	3L_22835199_SNP [dm3] 3L_22842099_SNP [dm6]	G	T	2.806e^-4	0.944	DOWNSTREAM CR45659 INTERGENIC
X	18374009	X_18374009_INS [dm3] X_18479976_INS [dm6]	A	AAATTTCCCA	2.817e^-4	0.944	UPSTREAM CR45714 & 1 other DOWNSTREAM Hayan INTERGENIC	TF binding site mE1_TFBS_HSA
4	918678	4_918678_SNP [dm3] 4_898052_SNP [dm6]	A	T	2.825e^-4	0.944	INTRON unc-13
2R	19795285	2R_19795285_SNP [dm3] 2R_23907762_SNP [dm6]	C	A	2.830e^-4	0.944	START_GAINED kcc UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2477445	X_2477445_SNP [dm3] X_2583412_SNP [dm6]	A	G	2.841e^-4	0.944	NON_SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	2.844e^-4	0.944	INTERGENIC
2R	18355467	2R_18355467_SNP [dm3] 2R_22467962_SNP [dm6]	C	A	2.849e^-4	0.944	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	12355550	2R_12355550_SNP [dm3] 2R_16468045_SNP [dm6]	C	T	2.851e^-4	0.944	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3R	14677125	3R_14677125_SNP [dm3] 3R_18851403_SNP [dm6]	G	A	2.864e^-4	0.944	UPSTREAM CR45633 INTRON CG31226
2R	14187733	2R_14187733_SNP [dm3] 2R_18300228_SNP [dm6]	G	T	2.865e^-4	0.944	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8985073	2L_8985073_SNP [dm3] 2L_8985073_SNP [dm6]	A	T	2.874e^-4	0.944	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17279843	2L_17279843_SNP [dm3] 2L_17279843_SNP [dm6]	C	A	2.882e^-4	0.944	UPSTREAM CR45729 INTERGENIC
2R	17390370	2R_17390370_INS [dm3] 2R_21502865_INS [dm6]	T	TT	2.888e^-4	0.944	INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12034433	2L_12034433_SNP [dm3] 2L_12034433_SNP [dm6]	G	T	2.910e^-4	0.944	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
2L	12034452	2L_12034452_SNP [dm3] 2L_12034452_SNP [dm6]	A	C	2.910e^-4	0.944	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
3L	16439506	3L_16439506_SNP [dm3] 3L_16446406_SNP [dm6]	G	C	2.917e^-4	0.944	INTRON CG33158 & 1 other
2L	15248709	2L_15248709_SNP [dm3] 2L_15248709_SNP [dm6]	T	C	2.945e^-4	0.944	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	14226164	3L_14226164_SNP [dm3] 3L_14233064_SNP [dm6]	T	A	2.948e^-4	0.944	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
2R	14188405	2R_14188405_SNP [dm3] 2R_18300900_SNP [dm6]	G	C	2.951e^-4	0.944	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	22774238	3L_22774238_SNP [dm3] 3L_22781138_SNP [dm6]	T	C	2.954e^-4	0.944	INTRON SPoCk
3L	2899623	3L_2899623_SNP [dm3] 3L_2899623_SNP [dm6]	G	A	2.958e^-4	0.944	INTRON Shab
3R	25962853	3R_25962853_SNP [dm3] 3R_30137131_SNP [dm6]	A	T	2.960e^-4	0.944	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad
2R	4175715	2R_4175715_SNP [dm3] 2R_8288210_SNP [dm6]	A	T	2.967e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	5610609	2L_5610609_SNP [dm3] 2L_5610609_SNP [dm6]	C	T	2.969e^-4	0.944	INTRON CG14010
X	13524005	X_13524005_DEL [dm3] X_13629972_DEL [dm6]	AGATATGTATAA...	A	2.970e^-4	0.944	INTRON NFAT
X	13524019	X_13524019_SNP [dm3] X_13629986_SNP [dm6]	T	C	2.970e^-4	0.944	INTRON NFAT
X	13524023	X_13524023_INS [dm3] X_13629990_INS [dm6]	T	TCTT	2.970e^-4	0.944	INTRON NFAT
3L	22813805	3L_22813805_SNP [dm3] 3L_22820705_SNP [dm6]	G	T	2.975e^-4	0.944	INTRON jim
X	20045357	X_20045357_SNP [dm3] X_20151324_SNP [dm6]	A	C	2.978e^-4	0.944	INTRON CG9572
3L	1291128	3L_1291128_SNP [dm3] 3L_1291128_SNP [dm6]	C	T	2.984e^-4	0.944	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10491723	3L_10491723_SNP [dm3] 3L_10498623_SNP [dm6]	G	A	3.005e^-4	0.944	INTRON A2bp1
3L	22962180	3L_22962180_SNP [dm3] 3L_22969080_SNP [dm6]	C	G	3.012e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	16496143	2R_16496143_SNP [dm3] 2R_20608638_SNP [dm6]	C	T	3.020e^-4	0.944	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10138855	3R_10138855_INS [dm3] 3R_14313133_INS [dm6]	G	GT	3.022e^-4	0.944	INTRON CG31321
2L	8985067	2L_8985067_SNP [dm3] 2L_8985067_SNP [dm6]	A	T	3.025e^-4	0.944	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985088	2L_8985088_SNP [dm3] 2L_8985088_SNP [dm6]	T	C	3.025e^-4	0.944	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985098	2L_8985098_SNP [dm3] 2L_8985098_SNP [dm6]	A	T	3.025e^-4	0.944	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14053589	3L_14053589_SNP [dm3] 3L_14060489_SNP [dm6]	G	A	3.029e^-4	0.944	INTRON CG32138
2L	14393222	2L_14393222_SNP [dm3] 2L_14393222_SNP [dm6]	T	C	3.036e^-4	0.944	INTRON elB	TF binding site mE1_TFBS_inv
2R	3895518	2R_3895518_SNP [dm3] 2R_8008013_SNP [dm6]	C	T	3.040e^-4	0.944	SYNONYMOUS_CODING Odc2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6525422	X_6525422_SNP [dm3] X_6631389_SNP [dm6]	G	T	3.042e^-4	0.944	INTRON pigs
X	3780123	X_3780123_SNP [dm3] X_3886090_SNP [dm6]	C	A	3.043e^-4	0.944	INTRON CG15239
2L	8567741	2L_8567741_SNP [dm3] 2L_8567741_SNP [dm6]	G	T	3.068e^-4	0.944	INTRON Sema-1a
2L	8567742	2L_8567742_SNP [dm3] 2L_8567742_SNP [dm6]	C	G	3.068e^-4	0.944	INTRON Sema-1a
2L	9646630	2L_9646630_SNP [dm3] 2L_9646630_SNP [dm6]	T	C	3.072e^-4	0.944	SYNONYMOUS_CODING Apoltp
3L	5407894	3L_5407894_INS [dm3] 3L_5414794_INS [dm6]	G	GTTGTAGTTG	3.077e^-4	0.944	INTERGENIC
2L	16338008	2L_16338008_SNP [dm3] 2L_16338008_SNP [dm6]	A	T	3.078e^-4	0.944	UTR_3_PRIME CG42266 UPSTREAM CG31817
3L	12114196	3L_12114196_SNP [dm3] 3L_12121096_SNP [dm6]	T	C	3.083e^-4	0.944	UTR_3_PRIME CG11560 DOWNSTREAM yps
2L	5668030	2L_5668030_SNP [dm3] 2L_5668030_SNP [dm6]	T	G	3.084e^-4	0.944	INTRON Hsp60C
3L	18304764	3L_18304764_SNP [dm3] 3L_18311664_SNP [dm6]	C	A	3.087e^-4	0.944	INTERGENIC
2L	3130661	2L_3130661_SNP [dm3] 2L_3130661_SNP [dm6]	G	A	3.089e^-4	0.944	INTRON toc
3L	1320022	3L_1320022_SNP [dm3] 3L_1320022_SNP [dm6]	T	C	3.103e^-4	0.944	INTRON Myo61F
2L	562666	2L_562666_SNP [dm3] 2L_562666_SNP [dm6]	T	C	3.106e^-4	0.944	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	25776362	3R_25776362_SNP [dm3] 3R_29950640_SNP [dm6]	C	G	3.111e^-4	0.944	DOWNSTREAM TkR99D INTERGENIC
2R	16959828	2R_16959828_SNP [dm3] 2R_21072323_SNP [dm6]	C	G	3.111e^-4	0.944	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	19360110	3L_19360110_SNP [dm3] 3L_19367010_SNP [dm6]	T	G	3.123e^-4	0.944	INTRON CG32206
3L	10699614	3L_10699614_SNP [dm3] 3L_10706514_SNP [dm6]	A	T	3.141e^-4	0.944	INTERGENIC
3L	10699617	3L_10699617_SNP [dm3] 3L_10706517_SNP [dm6]	T	C	3.141e^-4	0.944	INTERGENIC
3L	10699622	3L_10699622_SNP [dm3] 3L_10706522_SNP [dm6]	G	T	3.141e^-4	0.944	INTERGENIC
3L	10699623	3L_10699623_SNP [dm3] 3L_10706523_SNP [dm6]	A	T	3.141e^-4	0.944	INTERGENIC
3L	10699629	3L_10699629_SNP [dm3] 3L_10706529_SNP [dm6]	T	G	3.141e^-4	0.944	INTERGENIC
2L	12234841	2L_12234841_INS [dm3] 2L_12234841_INS [dm6]	A	AATGAGAGTAAAA...	3.144e^-4	0.944	INTRON aret
3L	11874288	3L_11874288_SNP [dm3] 3L_11881188_SNP [dm6]	G	T	3.149e^-4	0.944	UPSTREAM CCDC151 DOWNSTREAM CG14128 INTRON CG44837
2L	6423704	2L_6423704_SNP [dm3] 2L_6423704_SNP [dm6]	G	A	3.157e^-4	0.944	UPSTREAM Tig & 1 other INTERGENIC
2R	19674834	2R_19674834_DEL [dm3] 2R_23787311_DEL [dm6]	TG	C	3.162e^-4	0.944	INTRON CG9850
3R	13884623	3R_13884623_SNP [dm3] 3R_18058901_SNP [dm6]	T	G	3.163e^-4	0.944	INTERGENIC
X	2977237	X_2977237_SNP [dm3] X_3083204_SNP [dm6]	A	T	3.163e^-4	0.944	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13744202	3L_13744202_SNP [dm3] 3L_13751102_SNP [dm6]	T	C	3.164e^-4	0.944	INTRON bru-3
2L	5211544	2L_5211544_SNP [dm3] 2L_5211544_SNP [dm6]	T	G	3.164e^-4	0.944	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
3L	10972556	3L_10972556_SNP [dm3] 3L_10979456_SNP [dm6]	A	C	3.168e^-4	0.944	INTERGENIC
3R	26991255	3R_26991255_SNP [dm3] 3R_31165533_SNP [dm6]	C	T	3.184e^-4	0.944	INTRON Gycbeta100B & 1 other
2R	5005553	2R_5005553_SNP [dm3] 2R_9118048_SNP [dm6]	T	G	3.188e^-4	0.944	SYNONYMOUS_CODING Su_var_2-10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9576858	2L_9576858_SNP [dm3] 2L_9576858_SNP [dm6]	T	G	3.200e^-4	0.944	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25841174	3R_25841174_SNP [dm3] 3R_30015452_SNP [dm6]	T	C	3.213e^-4	0.944	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	14221642	3L_14221642_SNP [dm3] 3L_14228542_SNP [dm6]	G	T	3.216e^-4	0.944	UPSTREAM nuf INTRON nuf
X	17260098	X_17260098_SNP [dm3] X_17366065_SNP [dm6]	G	A	3.217e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	15736167	2L_15736167_SNP [dm3] 2L_15736167_SNP [dm6]	T	C	3.231e^-4	0.944	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16959726	2R_16959726_SNP [dm3] 2R_21072221_SNP [dm6]	G	A	3.234e^-4	0.944	DOWNSTREAM CR44704 INTRON CG10527
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	3.236e^-4	0.944	INTRON Tgi
3L	12704426	3L_12704426_SNP [dm3] 3L_12711326_SNP [dm6]	C	A	3.241e^-4	0.944	INTERGENIC
2R	9736976	2R_9736976_SNP [dm3] 2R_13849471_SNP [dm6]	T	A	3.269e^-4	0.944	UPSTREAM CG30485 INTRON CG30484
3L	4712244	3L_4712244_SNP [dm3] 3L_4712244_SNP [dm6]	A	T	3.275e^-4	0.944	INTRON RhoGEF64C
3R	18505655	3R_18505655_SNP [dm3] 3R_22679933_SNP [dm6]	T	C	3.277e^-4	0.944	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18505690	3R_18505690_SNP [dm3] 3R_22679968_SNP [dm6]	T	C	3.277e^-4	0.944	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10200990	2L_10200990_SNP [dm3] 2L_10200990_SNP [dm6]	G	A	3.280e^-4	0.944	UPSTREAM RpL7 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12355546	2R_12355546_SNP [dm3] 2R_16468041_SNP [dm6]	G	T	3.293e^-4	0.944	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
2R	12355548	2R_12355548_SNP [dm3] 2R_16468043_SNP [dm6]	C	T	3.293e^-4	0.944	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
X	19039639	X_19039639_SNP [dm3] X_19145606_SNP [dm6]	A	T	3.297e^-4	0.944	INTRON RhoGAP18B	TF binding site mE1_TFBS_h
3L	14244411	3L_14244411_SNP [dm3] 3L_14251311_SNP [dm6]	A	C	3.298e^-4	0.944	INTERGENIC
3L	13993699	3L_13993699_SNP [dm3] 3L_14000599_SNP [dm6]	A	G	3.302e^-4	0.944	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7431852	2R_7431852_SNP [dm3] 2R_11544347_SNP [dm6]	C	T	3.311e^-4	0.944	INTERGENIC
3L	9596792	3L_9596792_SNP [dm3] 3L_9603692_SNP [dm6]	T	A	3.317e^-4	0.944	UTR_5_PRIME CG3280
X	5409195	X_5409195_SNP [dm3] X_5515162_SNP [dm6]	T	G	3.323e^-4	0.944	INTERGENIC
3L	3031714	3L_3031714_SNP [dm3] 3L_3031714_SNP [dm6]	C	T	3.324e^-4	0.944	INTERGENIC
3L	15202219	3L_15202219_DEL [dm3] 3L_15209119_DEL [dm6]	ATATATCATACACTGTATTT...	A	3.326e^-4	0.944	DOWNSTREAM CG6888 INTERGENIC
3L	18150035	3L_18150035_SNP [dm3] 3L_18156935_SNP [dm6]	G	A	3.329e^-4	0.944	INTRON CG13699
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	3.332e^-4	0.944	UTR_3_PRIME psh UPSTREAM Hayan
3L	10752285	3L_10752285_SNP [dm3] 3L_10759185_SNP [dm6]	G	A	3.335e^-4	0.944	INTERGENIC
3L	11873622	3L_11873622_SNP [dm3] 3L_11880522_SNP [dm6]	C	G	3.337e^-4	0.944	NON_SYNONYMOUS_CODING CG14128 UPSTREAM CCDC151 INTRON CG44837
2L	17991412	2L_17991412_DEL [dm3] 2L_17991412_DEL [dm6]	GG	G	3.350e^-4	0.944	UTR_3_PRIME Prosbeta5R2
3L	17575746	3L_17575746_SNP [dm3] 3L_17582646_SNP [dm6]	C	A	3.353e^-4	0.944	INTRON Eip74EF
X	3356745	X_3356745_SNP [dm3] X_3462712_SNP [dm6]	C	T	3.357e^-4	0.944	UTR_3_PRIME CG16781 DOWNSTREAM CG10801 INTRON CR44999
3L	19995490	3L_19995490_SNP [dm3] 3L_20002390_SNP [dm6]	T	C	3.360e^-4	0.944	UTR_3_PRIME Tom20 UPSTREAM CG7668 DOWNSTREAM Tom20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Stat92E
2R	18963283	2R_18963283_SNP [dm3] 2R_23075760_SNP [dm6]	C	T	3.363e^-4	0.944	SYNONYMOUS_CODING CG3085 DOWNSTREAM Art7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	19369070	3L_19369070_INS [dm3] 3L_19375970_INS [dm6]	A	ATGA	3.372e^-4	0.944	INTRON CG32206
3R	14489332	3R_14489332_INS [dm3] 3R_18663610_INS [dm6]	T	TTGGCTT	3.377e^-4	0.944	UPSTREAM Gos28 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	17212367	X_17212367_SNP [dm3] X_17318334_SNP [dm6]	C	T	3.378e^-4	0.944	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15958425	2L_15958425_SNP [dm3] 2L_15958425_SNP [dm6]	A	T	3.382e^-4	0.944	NON_SYNONYMOUS_CODING CG18063 INTRON beat-Ib
3L	22840756	3L_22840756_DEL [dm3] 3L_22847656_DEL [dm6]	GCCTTTGCTTGAAG...	G	3.393e^-4	0.944	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4289235	3L_4289235_SNP [dm3] 3L_4289235_SNP [dm6]	C	T	3.404e^-4	0.944	DOWNSTREAM TfIIEbeta INTRON Hexo1	TF binding site mE1_TFBS_chinmo
2R	13734902	2R_13734902_INS [dm3] 2R_17847397_INS [dm6]	C	CCT	3.415e^-4	0.944	UTR_5_PRIME olf186-M INTRON olf186-F
2L	16097503	2L_16097503_SNP [dm3] 2L_16097503_SNP [dm6]	A	C	3.417e^-4	0.944	INTERGENIC
2L	16097510	2L_16097510_SNP [dm3] 2L_16097510_SNP [dm6]	C	T	3.417e^-4	0.944	INTERGENIC
3L	18917452	3L_18917452_SNP [dm3] 3L_18924352_SNP [dm6]	G	C	3.419e^-4	0.944	NON_SYNONYMOUS_CODING CG32204 UPSTREAM CG43049
3R	25770833	3R_25770833_SNP [dm3] 3R_29945111_SNP [dm6]	G	T	3.420e^-4	0.944	SYNONYMOUS_CODING CG15523
X	9377287	X_9377287_SNP [dm3] X_9483254_SNP [dm6]	A	G	3.420e^-4	0.944	INTRON mgl
2L	17525406	2L_17525406_SNP [dm3] 2L_17525406_SNP [dm6]	A	G	3.420e^-4	0.944	SYNONYMOUS_CODING Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
3L	18789351	3L_18789351_INS [dm3] 3L_18796251_INS [dm6]	C	CGCC	3.428e^-4	0.944	INTRON ftz-f1
3R	13063674	3R_13063674_SNP [dm3] 3R_17237952_SNP [dm6]	C	A	3.433e^-4	0.944	INTRON beat-IIb
3L	10959458	3L_10959458_SNP [dm3] 3L_10966358_SNP [dm6]	C	G	3.437e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4007601	3L_4007601_SNP [dm3] 3L_4007601_SNP [dm6]	A	G	3.440e^-4	0.944	DOWNSTREAM CG14985 INTERGENIC
3R	11979925	3R_11979925_SNP [dm3] 3R_16154203_SNP [dm6]	T	C	3.440e^-4	0.944	UPSTREAM CG6006 INTERGENIC
3L	14221716	3L_14221716_SNP [dm3] 3L_14228616_SNP [dm6]	G	A	3.440e^-4	0.944	UPSTREAM nuf INTRON nuf
3L	19084381	3L_19084381_SNP [dm3] 3L_19091281_SNP [dm6]	A	T	3.442e^-4	0.944	DOWNSTREAM CR45386 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5574997	2L_5574997_INS [dm3] 2L_5574997_INS [dm6]	A	AA	3.444e^-4	0.944	INTERGENIC
X	5869088	X_5869088_SNP [dm3] X_5975055_SNP [dm6]	A	G	3.448e^-4	0.944	INTRON Grip
3R	27619519	3R_27619519_SNP [dm3] 3R_31793797_SNP [dm6]	T	C	3.453e^-4	0.944	START_GAINED CG2118 UTR_5_PRIME CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3R	27619579	3R_27619579_SNP [dm3] 3R_31793857_SNP [dm6]	C	T	3.453e^-4	0.944	UTR_5_PRIME CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	4969071	2R_4969071_SNP [dm3] 2R_9081566_SNP [dm6]	G	A	3.455e^-4	0.944	SPLICE_SITE_REGION CG8083 UPSTREAM CNT1 INTRON CG8083
3L	16637093	3L_16637093_SNP [dm3] 3L_16643993_SNP [dm6]	T	A	3.457e^-4	0.944	INTRON Abl	TF binding site BDTNP1_TFBS_dl
2R	11247082	2R_11247082_SNP [dm3] 2R_15359577_SNP [dm6]	C	T	3.457e^-4	0.944	INTRON unc-5
3L	9997822	3L_9997822_INS [dm3] 3L_10004722_INS [dm6]	A	AA	3.462e^-4	0.944	INTRON dpr6
2R	1244817	2R_1244817_DEL [dm3] 2R_5357312_DEL [dm6]	GCG	G	3.472e^-4	0.944	INTERGENIC
4	921062	4_921062_SNP [dm3] 4_900436_SNP [dm6]	G	A	3.473e^-4	0.944	SYNONYMOUS_CODING unc-13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14578654	3R_14578654_SNP [dm3] 3R_18752932_SNP [dm6]	G	A	3.474e^-4	0.944	SYNONYMOUS_CODING CG14299
2R	19678015	2R_19678015_SNP [dm3] 2R_23790492_SNP [dm6]	C	A	3.485e^-4	0.944	DOWNSTREAM CG15800 INTRON CG9850
3R	13240276	3R_13240276_SNP [dm3] 3R_17414554_SNP [dm6]	G	A	3.490e^-4	0.944	UTR_3_PRIME CG42822 DOWNSTREAM CG42821
2L	12195977	2L_12195977_SNP [dm3] 2L_12195977_SNP [dm6]	C	T	3.504e^-4	0.944	INTRON aret
3L	18538797	3L_18538797_SNP [dm3] 3L_18545697_SNP [dm6]	T	G	3.517e^-4	0.944	INTERGENIC
2R	16356606	2R_16356606_SNP [dm3] 2R_20469101_SNP [dm6]	T	A	3.524e^-4	0.944	INTRON CG12484
3L	10486369	3L_10486369_SNP [dm3] 3L_10493269_SNP [dm6]	G	C	3.557e^-4	0.944	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	5575489	2L_5575489_SNP [dm3] 2L_5575489_SNP [dm6]	C	T	3.568e^-4	0.944	INTERGENIC
3L	8698107	3L_8698107_SNP [dm3] 3L_8705007_SNP [dm6]	C	T	3.575e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14604240	3R_14604240_DEL [dm3] 3R_18778518_DEL [dm6]	CAAC	C	3.579e^-4	0.944	INTRON CG7720
2L	6255704	2L_6255704_SNP [dm3] 2L_6255704_SNP [dm6]	G	T	3.592e^-4	0.944	UPSTREAM CG9486 INTRON Ddr	TF binding site mE1_TFBS_HSA
3L	14352059	3L_14352059_SNP [dm3] 3L_14358959_SNP [dm6]	A	G	3.592e^-4	0.944	INTRON fz
3L	5277304	3L_5277304_SNP [dm3] 3L_5284204_SNP [dm6]	A	G	3.592e^-4	0.944	INTERGENIC
2L	10019067	2L_10019067_SNP [dm3] 2L_10019067_SNP [dm6]	T	G	3.598e^-4	0.944	INTERGENIC
2L	16375535	2L_16375535_INS [dm3] 2L_16375535_INS [dm6]	T	TGGAAGCTAGTA...	3.600e^-4	0.944	INTERGENIC
2R	4935615	2R_4935615_SNP [dm3] 2R_9048110_SNP [dm6]	G	A	3.607e^-4	0.944	INTRON CG13743
2R	5408190	2R_5408190_SNP [dm3] 2R_9520685_SNP [dm6]	A	G	3.610e^-4	0.944	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11173048	2L_11173048_SNP [dm3] 2L_11173048_SNP [dm6]	A	G	3.610e^-4	0.944	INTRON Ca-beta
2L	3950633	2L_3950633_SNP [dm3] 2L_3950633_SNP [dm6]	T	C	3.624e^-4	0.944	INTRON fred
3R	14027588	3R_14027588_SNP [dm3] 3R_18201866_SNP [dm6]	G	A	3.626e^-4	0.944	INTRON CG7985
X	5895057	X_5895057_SNP [dm3] X_6001024_SNP [dm6]	C	T	3.637e^-4	0.944	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12018597	3R_12018597_SNP [dm3] 3R_16192875_SNP [dm6]	C	A	3.642e^-4	0.944	INTRON sra
X	17259971	X_17259971_SNP [dm3] X_17365938_SNP [dm6]	A	G	3.651e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	16091999	2L_16091999_SNP [dm3] 2L_16091999_SNP [dm6]	A	G	3.653e^-4	0.944	INTERGENIC
2L	20828012	2L_20828012_SNP [dm3] 2L_20828012_SNP [dm6]	A	G	3.654e^-4	0.944	DOWNSTREAM CG9331 INTERGENIC
2L	11783288	2L_11783288_SNP [dm3] 2L_11783288_SNP [dm6]	C	T	3.662e^-4	0.944	INTERGENIC
2L	9577121	2L_9577121_SNP [dm3] 2L_9577121_SNP [dm6]	T	A	3.668e^-4	0.944	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9577163	2L_9577163_DEL [dm3] 2L_9577163_DEL [dm6]	ACAA	G	3.668e^-4	0.944	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	3.690e^-4	0.944	INTRON CG31191
3R	16758090	3R_16758090_SNP [dm3] 3R_20932368_SNP [dm6]	A	C	3.690e^-4	0.944	INTRON CG31191
2R	18976288	2R_18976288_SNP [dm3] 2R_23088765_SNP [dm6]	G	A	3.706e^-4	0.944	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976293	2R_18976293_SNP [dm3] 2R_23088770_SNP [dm6]	A	T	3.706e^-4	0.944	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976296	2R_18976296_SNP [dm3] 2R_23088773_SNP [dm6]	A	G	3.706e^-4	0.944	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3843499	2R_3843499_SNP [dm3] 2R_7955994_SNP [dm6]	T	C	3.709e^-4	0.944	UPSTREAM CG2906 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
2R	16852579	2R_16852579_SNP [dm3] 2R_20965074_SNP [dm6]	C	T	3.714e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23486507	3R_23486507_SNP [dm3] 3R_27660785_SNP [dm6]	A	C	3.718e^-4	0.944	UPSTREAM Mlc1 INTERGENIC
2L	6423831	2L_6423831_SNP [dm3] 2L_6423831_SNP [dm6]	G	A	3.726e^-4	0.944	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6293723	2L_6293723_SNP [dm3] 2L_6293723_SNP [dm6]	A	T	3.740e^-4	0.944	INTRON Ddr
2L	6293725	2L_6293725_SNP [dm3] 2L_6293725_SNP [dm6]	A	C	3.740e^-4	0.944	INTRON Ddr
2L	2832521	2L_2832521_SNP [dm3] 2L_2832521_SNP [dm6]	G	A	3.751e^-4	0.944	INTERGENIC
3R	8637220	3R_8637220_SNP [dm3] 3R_12811498_SNP [dm6]	G	A	3.784e^-4	0.944	SYNONYMOUS_CODING CG31345
3R	11189093	3R_11189093_SNP [dm3] 3R_15363371_SNP [dm6]	A	C	3.785e^-4	0.944	DOWNSTREAM CG34404 & 1 other INTRON CG6171	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21067304	X_21067304_DEL [dm3] X_21196277_DEL [dm6]	TAAC	T	3.792e^-4	0.944	INTERGENIC
2R	18284264	2R_18284264_SNP [dm3] 2R_22396759_SNP [dm6]	A	G	3.793e^-4	0.944	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	18042307	3R_18042307_SNP [dm3] 3R_22216585_SNP [dm6]	C	T	3.793e^-4	0.944	SYNONYMOUS_CODING Gld2 INTRON SKIP
2L	1963745	2L_1963745_SNP [dm3] 2L_1963745_SNP [dm6]	T	C	3.819e^-4	0.944	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9306285	2L_9306285_SNP [dm3] 2L_9306285_SNP [dm6]	A	G	3.820e^-4	0.944	INTERGENIC
3R	26747824	3R_26747824_SNP [dm3] 3R_30922102_SNP [dm6]	A	G	3.824e^-4	0.944	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3509127	2L_3509127_SNP [dm3] 2L_3509127_SNP [dm6]	A	G	3.832e^-4	0.944	UTR_3_PRIME CG31954 DOWNSTREAM CR45299 EXON CR45300
3L	13208154	3L_13208154_SNP [dm3] 3L_13215054_SNP [dm6]	A	T	3.832e^-4	0.944	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208196	3L_13208196_DEL [dm3] 3L_13215096_DEL [dm6]	TAGAAAGTCTAGA...	C	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208214	3L_13208214_SNP [dm3] 3L_13215114_SNP [dm6]	A	T	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208215	3L_13208215_SNP [dm3] 3L_13215115_SNP [dm6]	A	C	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208217	3L_13208217_DEL [dm3] 3L_13215117_DEL [dm6]	TAATACGAAAT...	C	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208229	3L_13208229_SNP [dm3] 3L_13215129_SNP [dm6]	G	T	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208233	3L_13208233_SNP [dm3] 3L_13215133_SNP [dm6]	T	A	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208242	3L_13208242_DEL [dm3] 3L_13215142_DEL [dm6]	AA	A	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208289	3L_13208289_SNP [dm3] 3L_13215189_SNP [dm6]	A	T	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13208293	3L_13208293_SNP [dm3] 3L_13215193_SNP [dm6]	A	T	3.832e^-4	0.944	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14663887	2L_14663887_SNP [dm3] 2L_14663887_SNP [dm6]	G	A	3.833e^-4	0.944	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17171690	2L_17171690_SNP [dm3] 2L_17171690_SNP [dm6]	C	T	3.836e^-4	0.944	SYNONYMOUS_CODING CG34106 UTR_3_PRIME beat-IIIa
3L	4756031	3L_4756031_SNP [dm3] 3L_4756031_SNP [dm6]	A	G	3.848e^-4	0.944	INTRON RhoGEF64C EXON CR43881
3L	4756038	3L_4756038_SNP [dm3] 3L_4756038_SNP [dm6]	A	T	3.848e^-4	0.944	INTRON RhoGEF64C EXON CR43881
3L	4756044	3L_4756044_SNP [dm3] 3L_4756044_SNP [dm6]	G	A	3.848e^-4	0.944	INTRON RhoGEF64C EXON CR43881
X	17131542	X_17131542_SNP [dm3] X_17237509_SNP [dm6]	A	T	3.852e^-4	0.944	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	17131859	X_17131859_SNP [dm3] X_17237826_SNP [dm6]	G	T	3.852e^-4	0.944	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13993540	3L_13993540_SNP [dm3] 3L_14000440_SNP [dm6]	T	C	3.858e^-4	0.944	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13994098	3L_13994098_SNP [dm3] 3L_14000998_SNP [dm6]	G	C	3.858e^-4	0.944	SYNONYMOUS_CODING CG8783	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14534578	3R_14534578_SNP [dm3] 3R_18708856_SNP [dm6]	A	G	3.863e^-4	0.944	INTRON VAChT & 1 other
3R	25802437	3R_25802437_SNP [dm3] 3R_29976715_SNP [dm6]	G	A	3.874e^-4	0.944	INTERGENIC
2R	13175832	2R_13175832_SNP [dm3] 2R_17288327_SNP [dm6]	C	G	3.875e^-4	0.944	INTRON mbl
X	16563113	X_16563113_SNP [dm3] X_16669080_SNP [dm6]	A	G	3.880e^-4	0.944	SYNONYMOUS_CODING CG13012 DOWNSTREAM r
3R	23749545	3R_23749545_SNP [dm3] 3R_27923823_SNP [dm6]	A	T	3.900e^-4	0.944	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	562807	2L_562807_SNP [dm3] 2L_562807_SNP [dm6]	C	T	3.902e^-4	0.944	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	12602229	2L_12602229_SNP [dm3] 2L_12602229_SNP [dm6]	A	T	3.902e^-4	0.944	INTRON nub
2L	16704529	2L_16704529_SNP [dm3] 2L_16704529_SNP [dm6]	G	C	3.907e^-4	0.944	UTR_3_PRIME CG31808	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	3.912e^-4	0.944	INTRON bru-3
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	3.912e^-4	0.944	INTRON bru-3
3R	25983575	3R_25983575_SNP [dm3] 3R_30157853_SNP [dm6]	G	A	3.915e^-4	0.944	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	920083	3L_920083_SNP [dm3] 3L_920083_SNP [dm6]	A	G	3.940e^-4	0.944	INTRON Glut1
3R	25969679	3R_25969679_SNP [dm3] 3R_30143957_SNP [dm6]	T	C	3.947e^-4	0.944	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19995568	X_19995568_SNP [dm3] X_20101535_SNP [dm6]	C	A	3.948e^-4	0.944	INTERGENIC	transposable element FlyBase
2L	8505603	2L_8505603_SNP [dm3] 2L_8505603_SNP [dm6]	T	G	3.949e^-4	0.944	INTRON Dh31
3L	792805	3L_792805_SNP [dm3] 3L_792805_SNP [dm6]	A	T	3.952e^-4	0.944	INTERGENIC
3R	15356639	3R_15356639_SNP [dm3] 3R_19530917_SNP [dm6]	G	T	3.966e^-4	0.944	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3L	10020945	3L_10020945_SNP [dm3] 3L_10027845_SNP [dm6]	A	G	3.982e^-4	0.944	INTRON dpr6
3L	13259709	3L_13259709_SNP [dm3] 3L_13266609_SNP [dm6]	C	T	3.996e^-4	0.944	INTRON caps
2L	8649110	2L_8649110_SNP [dm3] 2L_8649110_SNP [dm6]	A	G	4.024e^-4	0.944	INTRON Sema-1a
2L	8649124	2L_8649124_SNP [dm3] 2L_8649124_SNP [dm6]	A	G	4.024e^-4	0.944	INTRON Sema-1a
2L	5786847	2L_5786847_SNP [dm3] 2L_5786847_SNP [dm6]	G	A	4.025e^-4	0.944	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
3R	6369759	3R_6369759_SNP [dm3] 3R_10544037_SNP [dm6]	A	G	4.032e^-4	0.944	INTRON hth
X	12024352	X_12024352_SNP [dm3] X_12130319_SNP [dm6]	T	G	4.036e^-4	0.944	INTRON Ten-a
3L	11780359	3L_11780359_SNP [dm3] 3L_11787259_SNP [dm6]	A	G	4.041e^-4	0.944	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1290993	3L_1290993_SNP [dm3] 3L_1290993_SNP [dm6]	G	C	4.041e^-4	0.944	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6624632	2L_6624632_SNP [dm3] 2L_6624632_SNP [dm6]	T	C	4.043e^-4	0.944	SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
2L	6624651	2L_6624651_SNP [dm3] 2L_6624651_SNP [dm6]	T	C	4.043e^-4	0.944	NON_SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
2R	6386962	2R_6386962_SNP [dm3] 2R_10499457_SNP [dm6]	G	A	4.048e^-4	0.944	DOWNSTREAM lola INTRON lola
2L	12307334	2L_12307334_SNP [dm3] 2L_12307334_SNP [dm6]	A	T	4.051e^-4	0.944	INTRON aret
3R	19305619	3R_19305619_SNP [dm3] 3R_23479897_SNP [dm6]	T	C	4.060e^-4	0.944	INTERGENIC
X	19039579	X_19039579_SNP [dm3] X_19145546_SNP [dm6]	G	A	4.062e^-4	0.944	INTRON RhoGAP18B
3L	4297767	3L_4297767_SNP [dm3] 3L_4297767_SNP [dm6]	C	A	4.063e^-4	0.944	INTRON dyl
3L	8038922	3L_8038922_DEL [dm3] 3L_8045822_DEL [dm6]	TG	C	4.067e^-4	0.944	INTRON nmo
2L	8649112	2L_8649112_SNP [dm3] 2L_8649112_SNP [dm6]	A	G	4.074e^-4	0.944	INTRON Sema-1a
3L	18233433	3L_18233433_DEL [dm3] 3L_18240333_DEL [dm6]	TTCTTAATAAAAACG...	T	4.079e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	18391659	X_18391659_SNP [dm3] X_18497626_SNP [dm6]	T	C	4.085e^-4	0.944	INTRON GalNAc-T2
3L	1514433	3L_1514433_SNP [dm3] 3L_1514433_SNP [dm6]	A	C	4.092e^-4	0.944	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8227271	X_8227271_SNP [dm3] X_8333238_SNP [dm6]	A	G	4.096e^-4	0.944	INTRON nAChRalpha3
2R	17581109	2R_17581109_SNP [dm3] 2R_21693604_SNP [dm6]	G	A	4.113e^-4	0.944	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2R	17581133	2R_17581133_SNP [dm3] 2R_21693628_SNP [dm6]	G	T	4.113e^-4	0.944	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
X	12233776	X_12233776_SNP [dm3] X_12339743_SNP [dm6]	A	G	4.117e^-4	0.944	INTERGENIC
3R	26410964	3R_26410964_SNP [dm3] 3R_30585242_SNP [dm6]	C	T	4.122e^-4	0.944	INTRON CG9717	TF binding site mE1_TFBS_cad
3L	13702833	3L_13702833_SNP [dm3] 3L_13709733_SNP [dm6]	C	T	4.123e^-4	0.944	INTRON bru-3
3L	3057188	3L_3057188_SNP [dm3] 3L_3057188_SNP [dm6]	T	C	4.129e^-4	0.944	SYNONYMOUS_CODING CG32486	TF binding site BDTNP1_TFBS_twi
2L	12234844	2L_12234844_SNP [dm3] 2L_12234844_SNP [dm6]	C	G	4.129e^-4	0.944	INTRON aret
2L	12234845	2L_12234845_INS [dm3] 2L_12234845_INS [dm6]	G	GAAGTAAAGTACATAA...	4.129e^-4	0.944	INTRON aret
2L	12234848	2L_12234848_SNP [dm3] 2L_12234848_SNP [dm6]	A	T	4.129e^-4	0.944	INTRON aret
2L	12234851	2L_12234851_INS [dm3] 2L_12234851_INS [dm6]	T	TAAGCTGGGCAGTAACCAAT...	4.129e^-4	0.944	INTRON aret
2R	16757677	2R_16757677_SNP [dm3] 2R_20870172_SNP [dm6]	C	A	4.133e^-4	0.944	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5823372	3L_5823372_SNP [dm3] 3L_5830272_SNP [dm6]	A	T	4.139e^-4	0.944	INTRON vn
3L	2339903	3L_2339903_SNP [dm3] 3L_2339903_SNP [dm6]	A	C	4.139e^-4	0.944	INTRON MsR1
3R	10155789	3R_10155789_SNP [dm3] 3R_14330067_SNP [dm6]	C	G	4.142e^-4	0.944	UTR_3_PRIME NK7.1 DOWNSTREAM NK7.1 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	2886588	3L_2886588_SNP [dm3] 3L_2886588_SNP [dm6]	G	T	4.148e^-4	0.944	INTRON spz5
2L	3267425	2L_3267425_SNP [dm3] 2L_3267425_SNP [dm6]	G	A	4.152e^-4	0.944	UPSTREAM CR44484 INTERGENIC
2L	17791617	2L_17791617_SNP [dm3] 2L_17791617_SNP [dm6]	A	T	4.153e^-4	0.944	UPSTREAM CR43419 INTRON CadN2
2R	14295343	2R_14295343_SNP [dm3] 2R_18407838_SNP [dm6]	C	A	4.154e^-4	0.944	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	14295348	2R_14295348_SNP [dm3] 2R_18407843_SNP [dm6]	C	T	4.154e^-4	0.944	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	14295361	2R_14295361_SNP [dm3] 2R_18407856_SNP [dm6]	C	A	4.154e^-4	0.944	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2L	14557354	2L_14557354_SNP [dm3] 2L_14557354_SNP [dm6]	C	T	4.157e^-4	0.944	DOWNSTREAM CR44854 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14501943	2R_14501943_SNP [dm3] 2R_18614438_SNP [dm6]	G	A	4.162e^-4	0.944	UPSTREAM CG5323 DOWNSTREAM CG10927 INTRON mRpS28	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	13491849	3L_13491849_SNP [dm3] 3L_13498749_SNP [dm6]	C	T	4.181e^-4	0.944	INTRON Tgi
3L	13491855	3L_13491855_DEL [dm3] 3L_13498755_DEL [dm6]	AA	A	4.181e^-4	0.944	INTRON Tgi
3L	14221429	3L_14221429_SNP [dm3] 3L_14228329_SNP [dm6]	T	A	4.182e^-4	0.944	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3R	15712766	3R_15712766_SNP [dm3] 3R_19887044_SNP [dm6]	G	A	4.192e^-4	0.944	INTRON ninaE	TF binding site mE1_TFBS_cad
2R	17065217	2R_17065217_SNP [dm3] 2R_21177712_SNP [dm6]	G	T	4.219e^-4	0.944	DOWNSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
2L	9590912	2L_9590912_SNP [dm3] 2L_9590912_SNP [dm6]	G	T	4.224e^-4	0.944	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
2L	9455192	2L_9455192_SNP [dm3] 2L_9455192_SNP [dm6]	T	C	4.224e^-4	0.944	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	16749832	X_16749832_SNP [dm3] X_16855799_SNP [dm6]	C	T	4.250e^-4	0.944	INTRON CG13003
2L	9214671	2L_9214671_SNP [dm3] 2L_9214671_SNP [dm6]	C	T	4.260e^-4	0.944	INTRON tai
2L	13707331	2L_13707331_INS [dm3] 2L_13707331_INS [dm6]	A	ACAACC	4.277e^-4	0.944	UPSTREAM CG7311 INTRON CG31814
3R	25687236	3R_25687236_SNP [dm3] 3R_29861514_SNP [dm6]	G	A	4.283e^-4	0.944	UPSTREAM RpS8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10593015	2R_10593015_SNP [dm3] 2R_14705510_SNP [dm6]	A	G	4.297e^-4	0.944	INTRON mspo
3R	11998097	3R_11998097_SNP [dm3] 3R_16172375_SNP [dm6]	G	T	4.307e^-4	0.944	SYNONYMOUS_CODING CG8925 DOWNSTREAM CG6006
3L	4739317	3L_4739317_SNP [dm3] 3L_4739317_SNP [dm6]	A	T	4.315e^-4	0.944	INTRON RhoGEF64C
2L	5661874	2L_5661874_SNP [dm3] 2L_5661874_SNP [dm6]	A	C	4.319e^-4	0.944	UPSTREAM Hsp60C DOWNSTREAM CR44821 INTERGENIC
3R	25841211	3R_25841211_SNP [dm3] 3R_30015489_SNP [dm6]	T	A	4.324e^-4	0.944	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	11681317	3L_11681317_SNP [dm3] 3L_11688217_SNP [dm6]	A	G	4.339e^-4	0.944	SYNONYMOUS_CODING Sug
2L	6889783	2L_6889783_SNP [dm3] 2L_6889783_SNP [dm6]	C	A	4.339e^-4	0.944	INTRON Nlg2
3L	8661005	3L_8661005_SNP [dm3] 3L_8667905_SNP [dm6]	G	T	4.340e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve
2L	562320	2L_562320_SNP [dm3] 2L_562320_SNP [dm6]	G	A	4.362e^-4	0.944	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	3706473	2L_3706473_SNP [dm3] 2L_3706473_SNP [dm6]	G	T	4.368e^-4	0.944	UPSTREAM CG31778 DOWNSTREAM CG31777 & 1 other INTERGENIC
2R	17387632	2R_17387632_SNP [dm3] 2R_21500127_SNP [dm6]	C	A	4.369e^-4	0.944	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
3R	13886916	3R_13886916_SNP [dm3] 3R_18061194_SNP [dm6]	T	C	4.373e^-4	0.944	INTERGENIC
2L	7641729	2L_7641729_SNP [dm3] 2L_7641729_SNP [dm6]	A	C	4.393e^-4	0.944	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_zfh1
2L	7641733	2L_7641733_SNP [dm3] 2L_7641733_SNP [dm6]	A	G	4.393e^-4	0.944	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_zfh1
3L	22835328	3L_22835328_SNP [dm3] 3L_22842228_SNP [dm6]	G	T	4.399e^-4	0.944	DOWNSTREAM CR45659 INTERGENIC
X	8427149	X_8427149_SNP [dm3] X_8533116_SNP [dm6]	G	T	4.405e^-4	0.944	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15247026	3R_15247026_SNP [dm3] 3R_19421304_SNP [dm6]	G	C	4.411e^-4	0.944	INTRON CG31221
X	21169612	X_21169612_SNP [dm3] X_21298585_SNP [dm6]	C	T	4.411e^-4	0.944	NON_SYNONYMOUS_CODING CG1718 UPSTREAM mir-2535b
3L	1514074	3L_1514074_SNP [dm3] 3L_1514074_SNP [dm6]	T	A	4.415e^-4	0.944	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2R	9401453	2R_9401453_SNP [dm3] 2R_13513948_SNP [dm6]	T	A	4.423e^-4	0.944	UTR_3_PRIME Vmat DOWNSTREAM mip120
3L	12283986	3L_12283986_SNP [dm3] 3L_12290886_SNP [dm6]	G	A	4.428e^-4	0.944	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2358806	3R_2358806_SNP [dm3] 3R_6533084_SNP [dm6]	C	A	4.428e^-4	0.944	INTRON dpr11
2R	9019356	2R_9019356_SNP [dm3] 2R_13131851_SNP [dm6]	G	A	4.432e^-4	0.944	SYNONYMOUS_CODING CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	18639418	X_18639418_INS [dm3] X_18745385_INS [dm6]	A	ACCATTTGCAAA...	4.444e^-4	0.944	DOWNSTREAM CG12609 INTERGENIC
2L	3267543	2L_3267543_SNP [dm3] 2L_3267543_SNP [dm6]	C	G	4.452e^-4	0.944	UPSTREAM CR44484 INTERGENIC
X	5120748	X_5120748_DEL [dm3] X_5226715_DEL [dm6]	CTC	C	4.456e^-4	0.944	INTRON CG15465 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	12018598	3R_12018598_SNP [dm3] 3R_16192876_SNP [dm6]	C	T	4.459e^-4	0.944	INTRON sra
3L	16049958	3L_16049958_SNP [dm3] 3L_16056858_SNP [dm6]	G	C	4.466e^-4	0.944	INTRON Mbs
3R	14522727	3R_14522727_SNP [dm3] 3R_18697005_SNP [dm6]	C	T	4.475e^-4	0.944	INTERGENIC
2L	16701667	2L_16701667_SNP [dm3] 2L_16701667_SNP [dm6]	A	G	4.478e^-4	0.944	UPSTREAM CR43669 EXON CR43670	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7095024	3L_7095024_SNP [dm3] 3L_7101924_SNP [dm6]	C	G	4.483e^-4	0.944	INTRON form3
3L	971897	3L_971897_SNP [dm3] 3L_971897_SNP [dm6]	G	T	4.491e^-4	0.944	INTRON Glut1
X	2486045	X_2486045_SNP [dm3] X_2592012_SNP [dm6]	T	A	4.496e^-4	0.944	UPSTREAM egh INTRON egh
3L	13591713	3L_13591713_SNP [dm3] 3L_13598613_SNP [dm6]	G	C	4.506e^-4	0.944	UPSTREAM CR45120 INTRON bru-3
3L	13591715	3L_13591715_SNP [dm3] 3L_13598615_SNP [dm6]	A	G	4.506e^-4	0.944	UPSTREAM CR45120 INTRON bru-3
2R	9610229	2R_9610229_SNP [dm3] 2R_13722724_SNP [dm6]	C	T	4.508e^-4	0.944	INTRON fas
3R	12017288	3R_12017288_SNP [dm3] 3R_16191566_SNP [dm6]	A	T	4.509e^-4	0.944	INTRON sra
3L	11146524	3L_11146524_SNP [dm3] 3L_11153424_SNP [dm6]	G	C	4.511e^-4	0.944	INTRON CG32082
3L	11146526	3L_11146526_SNP [dm3] 3L_11153426_SNP [dm6]	G	A	4.511e^-4	0.944	INTRON CG32082
3R	25841625	3R_25841625_SNP [dm3] 3R_30015903_SNP [dm6]	G	A	4.513e^-4	0.944	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8165724	3L_8165724_SNP [dm3] 3L_8172624_SNP [dm6]	T	A	4.514e^-4	0.944	SYNONYMOUS_CODING RecQ4
2R	9030583	2R_9030583_SNP [dm3] 2R_13143078_SNP [dm6]	T	G	4.516e^-4	0.944	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
2R	9030585	2R_9030585_SNP [dm3] 2R_13143080_SNP [dm6]	G	A	4.516e^-4	0.944	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
3L	13269262	3L_13269262_SNP [dm3] 3L_13276162_SNP [dm6]	A	G	4.517e^-4	0.944	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
2R	8166327	2R_8166327_SNP [dm3] 2R_12278822_SNP [dm6]	T	C	4.521e^-4	0.944	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	14616510	3R_14616510_SNP [dm3] 3R_18790788_SNP [dm6]	G	C	4.527e^-4	0.944	INTRON CG7720
2L	9578895	2L_9578895_DEL [dm3] 2L_9578895_DEL [dm6]	ATCA	A	4.529e^-4	0.944	CODON_DELETION CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9578961	2L_9578961_DEL [dm3] 2L_9578961_DEL [dm6]	ATTCCGACTGGGATTTTGA...	A	4.529e^-4	0.944	CODON_DELETION CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3517143	3R_3517143_DEL [dm3] 3R_7691421_DEL [dm6]	ATTCTTTTCTCGAAAAGGGA...	A	4.532e^-4	0.944	INTRON Nlg1
2R	15133538	2R_15133538_SNP [dm3] 2R_19246033_SNP [dm6]	C	T	4.536e^-4	0.944	INTERGENIC
2L	9621939	2L_9621939_SNP [dm3] 2L_9621939_SNP [dm6]	A	T	4.537e^-4	0.944	INTRON GlcAT-S
2L	9621941	2L_9621941_SNP [dm3] 2L_9621941_SNP [dm6]	C	T	4.537e^-4	0.944	INTRON GlcAT-S
2L	5662732	2L_5662732_SNP [dm3] 2L_5662732_SNP [dm6]	T	C	4.541e^-4	0.944	UPSTREAM Hsp60C & 1 other INTERGENIC
X	5989084	X_5989084_SNP [dm3] X_6095051_SNP [dm6]	C	T	4.542e^-4	0.944	UTR_5_PRIME Nep1 INTRON Nep1
X	7191785	X_7191785_SNP [dm3] X_7297752_SNP [dm6]	T	C	4.542e^-4	0.944	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7644136	2L_7644136_SNP [dm3] 2L_7644136_SNP [dm6]	T	A	4.556e^-4	0.944	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2L	9336698	2L_9336698_SNP [dm3] 2L_9336698_SNP [dm6]	A	G	4.561e^-4	0.944	INTRON Eaat1
2L	18424095	2L_18424095_SNP [dm3] 2L_18424095_SNP [dm6]	A	G	4.566e^-4	0.944	INTERGENIC
3R	18335780	3R_18335780_SNP [dm3] 3R_22510058_SNP [dm6]	G	A	4.571e^-4	0.944	SYNONYMOUS_CODING Octbeta1R
X	5745751	X_5745751_SNP [dm3] X_5851718_SNP [dm6]	G	A	4.573e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16423528	2L_16423528_SNP [dm3] 2L_16423528_SNP [dm6]	C	A	4.579e^-4	0.944	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10510307	2L_10510307_SNP [dm3] 2L_10510307_SNP [dm6]	G	T	4.583e^-4	0.944	UTR_5_PRIME CG7384 DOWNSTREAM Fatp & 1 other	TF binding site mE1_TFBS_cad
2L	7594298	2L_7594298_SNP [dm3] 2L_7594298_SNP [dm6]	T	C	4.588e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23749487	3R_23749487_SNP [dm3] 3R_27923765_SNP [dm6]	A	G	4.605e^-4	0.944	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14843199	2L_14843199_INS [dm3] 2L_14843199_INS [dm6]	G	GGG	4.612e^-4	0.944	UPSTREAM CR43805 DOWNSTREAM CG42682 INTERGENIC
2L	16955027	2L_16955027_SNP [dm3] 2L_16955027_SNP [dm6]	A	C	4.616e^-4	0.944	INTERGENIC
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	4.628e^-4	0.944	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16430313	2R_16430313_SNP [dm3] 2R_20542808_SNP [dm6]	C	A	4.628e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16430314	2R_16430314_SNP [dm3] 2R_20542809_SNP [dm6]	A	G	4.628e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7638160	X_7638160_SNP [dm3] X_7744127_SNP [dm6]	T	C	4.628e^-4	0.944	INTERGENIC
3R	8503268	3R_8503268_SNP [dm3] 3R_12677546_SNP [dm6]	G	T	4.634e^-4	0.944	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17159639	2R_17159639_SNP [dm3] 2R_21272134_SNP [dm6]	C	A	4.656e^-4	0.944	INTRON Rgk3
2L	14556299	2L_14556299_SNP [dm3] 2L_14556299_SNP [dm6]	A	T	4.659e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17945302	2R_17945302_SNP [dm3] 2R_22057797_SNP [dm6]	C	A	4.659e^-4	0.944	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15133509	2R_15133509_SNP [dm3] 2R_19246004_SNP [dm6]	G	A	4.681e^-4	0.944	INTERGENIC
3R	18655514	3R_18655514_SNP [dm3] 3R_22829792_SNP [dm6]	A	C	4.683e^-4	0.944	INTERGENIC
3L	14221430	3L_14221430_SNP [dm3] 3L_14228330_SNP [dm6]	A	T	4.686e^-4	0.944	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
2R	4810969	2R_4810969_SNP [dm3] 2R_8923464_SNP [dm6]	C	T	4.696e^-4	0.944	SYNONYMOUS_CODING CG8243 UPSTREAM Spt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12602355	2L_12602355_SNP [dm3] 2L_12602355_SNP [dm6]	A	T	4.704e^-4	0.944	INTRON nub	TF binding site BDTNP1_TFBS_dl
2R	19794966	2R_19794966_INS [dm3] 2R_23907443_INS [dm6]	A	AACACAAAGTTA...	4.712e^-4	0.944	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6704289	X_6704289_SNP [dm3] X_6810256_SNP [dm6]	G	T	4.717e^-4	0.944	NON_SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5517268	2L_5517268_INS [dm3] 2L_5517268_INS [dm6]	G	GTGCATTG	4.722e^-4	0.944	UPSTREAM CG14020 INTERGENIC
2L	3446127	2L_3446127_SNP [dm3] 2L_3446127_SNP [dm6]	A	G	4.727e^-4	0.944	SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6646144	2R_6646144_SNP [dm3] 2R_10758639_SNP [dm6]	G	T	4.735e^-4	0.944	INTRON CG33144
2R	14927577	2R_14927577_SNP [dm3] 2R_19040072_SNP [dm6]	G	A	4.736e^-4	0.944	INTERGENIC
3R	26417034	3R_26417034_DEL [dm3] 3R_30591312_DEL [dm6]	AATTCGAA	A	4.737e^-4	0.944	INTERGENIC
2L	17727121	2L_17727121_SNP [dm3] 2L_17727121_SNP [dm6]	G	C	4.747e^-4	0.944	INTRON CadN
3L	3355258	3L_3355258_SNP [dm3] 3L_3355258_SNP [dm6]	G	A	4.753e^-4	0.944	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4077463	2R_4077463_SNP [dm3] 2R_8189958_SNP [dm6]	T	G	4.756e^-4	0.944	INTRON LRP1
2L	7542425	2L_7542425_SNP [dm3] 2L_7542425_SNP [dm6]	T	G	4.762e^-4	0.944	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	18624689	3L_18624689_SNP [dm3] 3L_18631589_SNP [dm6]	A	G	4.770e^-4	0.944	INTRON MYPT-75D
X	4193402	X_4193402_SNP [dm3] X_4299369_SNP [dm6]	A	G	4.774e^-4	0.944	DOWNSTREAM CG12692 INTERGENIC
3L	11235620	3L_11235620_SNP [dm3] 3L_11242520_SNP [dm6]	A	C	4.797e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	15741322	2L_15741322_SNP [dm3] 2L_15741322_SNP [dm6]	A	G	4.806e^-4	0.944	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24463964	3R_24463964_SNP [dm3] 3R_28638242_SNP [dm6]	A	G	4.809e^-4	0.944	NON_SYNONYMOUS_CODING CG9988	TF binding site mE1_TFBS_cad
2L	5575134	2L_5575134_SNP [dm3] 2L_5575134_SNP [dm6]	T	C	4.812e^-4	0.944	INTERGENIC
3R	26437568	3R_26437568_SNP [dm3] 3R_30611846_SNP [dm6]	G	A	4.814e^-4	0.944	UPSTREAM CR45571 INTERGENIC
X	8336445	X_8336445_INS [dm3] X_8442412_INS [dm6]	C	CC	4.826e^-4	0.944	UPSTREAM CG12123 INTERGENIC
3L	2435845	3L_2435845_SNP [dm3] 3L_2435845_SNP [dm6]	C	A	4.831e^-4	0.944	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13492001	3L_13492001_SNP [dm3] 3L_13498901_SNP [dm6]	T	C	4.832e^-4	0.944	INTRON Tgi
2L	10522389	2L_10522389_SNP [dm3] 2L_10522389_SNP [dm6]	A	T	4.836e^-4	0.944	INTERGENIC
3L	3057288	3L_3057288_SNP [dm3] 3L_3057288_SNP [dm6]	A	G	4.838e^-4	0.944	INTRON CG32486	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	27619197	3R_27619197_SNP [dm3] 3R_31793475_SNP [dm6]	G	T	4.844e^-4	0.944	SPLICE_SITE_REGION CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3790480	2L_3790480_SNP [dm3] 2L_3790480_SNP [dm6]	C	G	4.852e^-4	0.944	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14052304	3L_14052304_SNP [dm3] 3L_14059204_SNP [dm6]	C	A	4.871e^-4	0.944	INTRON CG32138
3L	14052318	3L_14052318_SNP [dm3] 3L_14059218_SNP [dm6]	T	A	4.871e^-4	0.944	INTRON CG32138
2L	5354651	2L_5354651_SNP [dm3] 2L_5354651_SNP [dm6]	A	T	4.871e^-4	0.944	INTRON nompC
2L	16423101	2L_16423101_SNP [dm3] 2L_16423101_SNP [dm6]	T	A	4.877e^-4	0.944	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14093832	2R_14093832_SNP [dm3] 2R_18206327_SNP [dm6]	G	C	4.884e^-4	0.944	INTERGENIC
3L	14626586	3L_14626586_SNP [dm3] 3L_14633486_SNP [dm6]	G	T	4.884e^-4	0.944	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1792099	2L_1792099_SNP [dm3] 2L_1792099_SNP [dm6]	C	G	4.885e^-4	0.944	SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c	regulatory region REDfly_CRMs
3R	9712543	3R_9712543_DEL [dm3] 3R_13886821_DEL [dm6]	AAAACCGA	A	4.889e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3508143	2L_3508143_SNP [dm3] 2L_3508143_SNP [dm6]	C	T	4.890e^-4	0.944	UPSTREAM tim & 2 others DOWNSTREAM CG31954 INTERGENIC
2L	5574978	2L_5574978_SNP [dm3] 2L_5574978_SNP [dm6]	A	C	4.890e^-4	0.944	INTERGENIC
X	5138674	X_5138674_SNP [dm3] X_5244641_SNP [dm6]	A	T	4.895e^-4	0.944	INTRON CG15465 & 1 other
2L	6935741	2L_6935741_SNP [dm3] 2L_6935741_SNP [dm6]	A	T	4.897e^-4	0.944	NON_SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7594345	2L_7594345_SNP [dm3] 2L_7594345_SNP [dm6]	G	C	4.897e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7594416	2L_7594416_SNP [dm3] 2L_7594416_SNP [dm6]	T	C	4.897e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7594448	2L_7594448_SNP [dm3] 2L_7594448_SNP [dm6]	G	C	4.897e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3281025	2L_3281025_SNP [dm3] 2L_3281025_SNP [dm6]	G	A	4.916e^-4	0.944	UPSTREAM CG3332 INTERGENIC
3L	13425527	3L_13425527_SNP [dm3] 3L_13432427_SNP [dm6]	C	A	4.917e^-4	0.944	UPSTREAM tRNA:V4:70BCb INTRON CG10713
X	3798425	X_3798425_SNP [dm3] X_3904392_SNP [dm6]	C	T	4.918e^-4	0.944	SYNONYMOUS_CODING CG42541
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	4.919e^-4	0.944	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3L	876673	3L_876673_SNP [dm3] 3L_876673_SNP [dm6]	C	T	4.925e^-4	0.944	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9962096	2L_9962096_SNP [dm3] 2L_9962096_SNP [dm6]	G	C	4.926e^-4	0.944	INTRON CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14487864	2L_14487864_SNP [dm3] 2L_14487864_SNP [dm6]	G	A	4.928e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1293156	3L_1293156_SNP [dm3] 3L_1293156_SNP [dm6]	G	T	4.938e^-4	0.944	SYNONYMOUS_CODING CG32333
3L	15202287	3L_15202287_SNP [dm3] 3L_15209187_SNP [dm6]	T	G	4.953e^-4	0.944	DOWNSTREAM CG6888 INTERGENIC
3R	3548559	3R_3548559_SNP [dm3] 3R_7722837_SNP [dm6]	C	T	4.974e^-4	0.944	SYNONYMOUS_CODING CG2616	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9479312	2R_9479312_SNP [dm3] 2R_13591807_SNP [dm6]	A	G	4.977e^-4	0.944	UTR_5_PRIME CG6191 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12448318	3L_12448318_SNP [dm3] 3L_12455218_SNP [dm6]	G	A	4.985e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	5764044	X_5764044_SNP [dm3] X_5870011_SNP [dm6]	G	A	4.987e^-4	0.944	NON_SYNONYMOUS_CODING CG15764 DOWNSTREAM GAA1
2R	19673336	2R_19673336_SNP [dm3] 2R_23785813_SNP [dm6]	G	A	4.989e^-4	0.944	INTRON CG9850
2L	1856368	2L_1856368_SNP [dm3] 2L_1856368_SNP [dm6]	C	G	4.989e^-4	0.944	INTRON wry
2L	6959169	2L_6959169_SNP [dm3] 2L_6959169_SNP [dm6]	G	C	4.994e^-4	0.944	UTR_3_PRIME Atac1 DOWNSTREAM CG3430
3L	4756088	3L_4756088_SNP [dm3] 3L_4756088_SNP [dm6]	A	T	4.998e^-4	0.944	INTRON RhoGEF64C EXON CR43881
2R	13850050	2R_13850050_SNP [dm3] 2R_17962545_SNP [dm6]	A	T	5.005e^-4	0.944	INTERGENIC
2R	4269720	2R_4269720_SNP [dm3] 2R_8382215_SNP [dm6]	A	G	5.008e^-4	0.944	INTRON pdm3
3L	9219435	3L_9219435_SNP [dm3] 3L_9226335_SNP [dm6]	C	G	5.033e^-4	0.944	INTERGENIC
2L	9343162	2L_9343162_SNP [dm3] 2L_9343162_SNP [dm6]	A	T	5.042e^-4	0.944	SYNONYMOUS_CODING CG3748
2L	6425437	2L_6425437_SNP [dm3] 2L_6425437_SNP [dm6]	A	T	5.048e^-4	0.944	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3279963	2L_3279963_SNP [dm3] 2L_3279963_SNP [dm6]	A	T	5.067e^-4	0.944	UPSTREAM CG3332 INTRON CG3332
3L	22831384	3L_22831384_SNP [dm3] 3L_22838284_SNP [dm6]	C	T	5.070e^-4	0.944	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
4	925536	4_925536_SNP [dm3] 4_904910_SNP [dm6]	C	A	5.079e^-4	0.944	UTR_5_PRIME unc-13 UPSTREAM unc-13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8183255	X_8183255_SNP [dm3] X_8289222_SNP [dm6]	T	G	5.085e^-4	0.944	INTRON nAChRalpha3
2R	18976223	2R_18976223_SNP [dm3] 2R_23088700_SNP [dm6]	T	C	5.089e^-4	0.944	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16281325	2R_16281325_SNP [dm3] 2R_20393820_SNP [dm6]	A	T	5.091e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16281346	2R_16281346_SNP [dm3] 2R_20393841_SNP [dm6]	C	A	5.091e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14604267	3R_14604267_SNP [dm3] 3R_18778545_SNP [dm6]	A	G	5.099e^-4	0.944	INTRON CG7720
3R	17246569	3R_17246569_SNP [dm3] 3R_21420847_SNP [dm6]	C	T	5.108e^-4	0.944	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17246575	3R_17246575_SNP [dm3] 3R_21420853_SNP [dm6]	G	T	5.108e^-4	0.944	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7831398	2L_7831398_INS [dm3] 2L_7831398_INS [dm6]	A	AGCAAA	5.108e^-4	0.944	INTRON mts
2R	14295358	2R_14295358_SNP [dm3] 2R_18407853_SNP [dm6]	A	T	5.113e^-4	0.944	START_GAINED GstE8 UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	14295365	2R_14295365_INS [dm3] 2R_18407860_INS [dm6]	A	AAAA	5.113e^-4	0.944	DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2L	15737064	2L_15737064_SNP [dm3] 2L_15737064_SNP [dm6]	T	C	5.115e^-4	0.944	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8601870	3L_8601870_INS [dm3] 3L_8608770_INS [dm6]	A	AT	5.125e^-4	0.944	INTRON CG6282
3L	18147224	3L_18147224_SNP [dm3] 3L_18154124_SNP [dm6]	G	C	5.131e^-4	0.944	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26397897	3R_26397897_SNP [dm3] 3R_30572175_SNP [dm6]	G	A	5.140e^-4	0.944	SYNONYMOUS_CODING tmod
2L	10546629	2L_10546629_SNP [dm3] 2L_10546629_SNP [dm6]	T	C	5.141e^-4	0.944	INTRON Trim9	TF binding site BDTNP1_TFBS_da
2L	5573322	2L_5573322_SNP [dm3] 2L_5573322_SNP [dm6]	C	A	5.154e^-4	0.944	INTERGENIC
2L	3937219	2L_3937219_SNP [dm3] 2L_3937219_SNP [dm6]	G	A	5.166e^-4	0.944	INTRON fred
3R	2897825	3R_2897825_SNP [dm3] 3R_7072103_SNP [dm6]	C	T	5.170e^-4	0.944	SYNONYMOUS_CODING CG1104 DOWNSTREAM CG1965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13491804	3L_13491804_SNP [dm3] 3L_13498704_SNP [dm6]	C	T	5.172e^-4	0.944	INTRON Tgi
2R	3739015	2R_3739015_SNP [dm3] 2R_7851510_SNP [dm6]	C	G	5.174e^-4	0.944	INTRON Dgk	TF binding site mE1_TFBS_chinmo
3R	26062975	3R_26062975_SNP [dm3] 3R_30237253_SNP [dm6]	G	A	5.175e^-4	0.944	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8166341	2R_8166341_INS [dm3] 2R_12278836_INS [dm6]	T	TGTGTTGTG	5.176e^-4	0.944	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8166343	2R_8166343_DEL [dm3] 2R_12278838_DEL [dm6]	TACAG	T	5.176e^-4	0.944	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3L	11856840	3L_11856840_SNP [dm3] 3L_11863740_SNP [dm6]	T	C	5.180e^-4	0.944	UPSTREAM CG44837 INTRON CG44837
3L	1585022	3L_1585022_SNP [dm3] 3L_1585022_SNP [dm6]	C	G	5.181e^-4	0.944	INTRON CG13917
3L	4895629	3L_4895629_SNP [dm3] 3L_4895629_SNP [dm6]	C	T	5.184e^-4	0.944	UTR_3_PRIME CG17150
2R	3134702	2R_3134702_INS [dm3] 2R_7247197_INS [dm6]	G	GGTG	5.184e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10440919	2L_10440919_INS [dm3] 2L_10440919_INS [dm6]	T	TAGCAATATAA...	5.197e^-4	0.944	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
3L	11683715	3L_11683715_SNP [dm3] 3L_11690615_SNP [dm6]	C	T	5.200e^-4	0.944	UPSTREAM CG14135 DOWNSTREAM Sug INTRON Pallidin	TF binding site mE1_TFBS_cad
2L	17010721	2L_17010721_DEL [dm3] 2L_17010721_DEL [dm6]	GGAGGAAGTTAAGTG...	G	5.200e^-4	0.944	DOWNSTREAM CG6304 INTERGENIC
3R	26496496	3R_26496496_SNP [dm3] 3R_30670774_SNP [dm6]	T	G	5.205e^-4	0.944	INTERGENIC
3R	15281139	3R_15281139_SNP [dm3] 3R_19455417_SNP [dm6]	T	C	5.206e^-4	0.944	INTRON CG31221
3L	13492020	3L_13492020_SNP [dm3] 3L_13498920_SNP [dm6]	C	T	5.209e^-4	0.944	INTRON Tgi
2R	10509199	2R_10509199_SNP [dm3] 2R_14621694_SNP [dm6]	G	A	5.210e^-4	0.944	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	26411240	3R_26411240_SNP [dm3] 3R_30585518_SNP [dm6]	G	C	5.213e^-4	0.944	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad
2L	15730910	2L_15730910_DEL [dm3] 2L_15730910_DEL [dm6]	AGTAGACAATC...	A	5.228e^-4	0.944	INTRON CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1305454	3L_1305454_SNP [dm3] 3L_1305454_SNP [dm6]	G	A	5.235e^-4	0.944	UTR_3_PRIME CG2277 DOWNSTREAM CG9149
2L	14009855	2L_14009855_INS [dm3] 2L_14009855_INS [dm6]	T	TT	5.246e^-4	0.944	DOWNSTREAM tRNA:Q:34E INTERGENIC
3L	14244727	3L_14244727_SNP [dm3] 3L_14251627_SNP [dm6]	G	T	5.247e^-4	0.944	INTERGENIC
3R	14677043	3R_14677043_DEL [dm3] 3R_18851321_DEL [dm6]	TTAATT	T	5.250e^-4	0.944	UTR_3_PRIME CG31226 UPSTREAM CR45633
3R	14677155	3R_14677155_SNP [dm3] 3R_18851433_SNP [dm6]	C	T	5.250e^-4	0.944	UTR_3_PRIME CG31226 UPSTREAM CR45633
3R	8649448	3R_8649448_SNP [dm3] 3R_12823726_SNP [dm6]	T	C	5.268e^-4	0.944	INTERGENIC
X	17192580	X_17192580_SNP [dm3] X_17298547_SNP [dm6]	A	T	5.285e^-4	0.944	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17192620	X_17192620_SNP [dm3] X_17298587_SNP [dm6]	G	A	5.285e^-4	0.944	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17192985	X_17192985_SNP [dm3] X_17298952_SNP [dm6]	C	T	5.285e^-4	0.944	INTRON CG5445 & 1 other
2L	17584645	2L_17584645_SNP [dm3] 2L_17584645_SNP [dm6]	A	T	5.287e^-4	0.944	DOWNSTREAM CR45112 & 1 other INTERGENIC
2L	17584659	2L_17584659_SNP [dm3] 2L_17584659_SNP [dm6]	T	A	5.287e^-4	0.944	DOWNSTREAM CR45112 & 1 other INTERGENIC
2L	17584661	2L_17584661_SNP [dm3] 2L_17584661_SNP [dm6]	A	T	5.287e^-4	0.944	DOWNSTREAM CR45112 & 1 other INTERGENIC
2L	17584576	2L_17584576_SNP [dm3] 2L_17584576_SNP [dm6]	T	G	5.296e^-4	0.944	DOWNSTREAM CR45112 & 1 other INTERGENIC
2L	14843773	2L_14843773_SNP [dm3] 2L_14843773_SNP [dm6]	C	A	5.297e^-4	0.944	DOWNSTREAM CG42682 INTERGENIC
2L	7656194	2L_7656194_SNP [dm3] 2L_7656194_SNP [dm6]	A	G	5.298e^-4	0.944	SYNONYMOUS_CODING Slob UTR_5_PRIME Slob INTRON Slob
3L	1514418	3L_1514418_SNP [dm3] 3L_1514418_SNP [dm6]	T	A	5.315e^-4	0.944	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17413382	2R_17413382_SNP [dm3] 2R_21525877_SNP [dm6]	A	C	5.317e^-4	0.944	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11633392	3R_11633392_SNP [dm3] 3R_15807670_SNP [dm6]	A	T	5.317e^-4	0.944	INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18079793	3R_18079793_SNP [dm3] 3R_22254071_SNP [dm6]	G	A	5.322e^-4	0.944	INTRON SKIP
3L	2435830	3L_2435830_SNP [dm3] 3L_2435830_SNP [dm6]	C	A	5.343e^-4	0.944	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3814112	2L_3814112_SNP [dm3] 2L_3814112_SNP [dm6]	T	C	5.373e^-4	0.944	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	2941239	2L_2941239_INS [dm3] 2L_2941239_INS [dm6]	C	CTGGC	5.374e^-4	0.944	INTRON lilli
3R	13063145	3R_13063145_SNP [dm3] 3R_17237423_SNP [dm6]	T	C	5.377e^-4	0.944	INTRON beat-IIb
X	17143508	X_17143508_SNP [dm3] X_17249475_SNP [dm6]	G	A	5.382e^-4	0.944	START_GAINED CG8675 UTR_5_PRIME CG8675 INTRON f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8501292	3R_8501292_DEL [dm3] 3R_12675570_DEL [dm6]	ATCTG	GAAA	5.382e^-4	0.944	DOWNSTREAM CG43630 & 1 other INTRON CG6188	TF binding site mE1_TFBS_cad
2L	5574990	2L_5574990_SNP [dm3] 2L_5574990_SNP [dm6]	A	T	5.390e^-4	0.944	INTERGENIC
2R	10915066	2R_10915066_SNP [dm3] 2R_15027561_SNP [dm6]	T	A	5.393e^-4	0.944	INTRON hbs	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	6945327	3R_6945327_SNP [dm3] 3R_11119605_SNP [dm6]	C	G	5.399e^-4	0.944	INTERGENIC
2L	16519650	2L_16519650_SNP [dm3] 2L_16519650_SNP [dm6]	G	T	5.416e^-4	0.944	INTRON CG5953
3R	3448190	3R_3448190_SNP [dm3] 3R_7622468_SNP [dm6]	C	T	5.425e^-4	0.944	INTRON CG34127
3R	15861473	3R_15861473_SNP [dm3] 3R_20035751_SNP [dm6]	C	T	5.425e^-4	0.944	SYNONYMOUS_CODING CG10889 DOWNSTREAM CG17193	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

pc_Deletion_PElem_SS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results