DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.195e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.073805

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2996 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	19998023	2L_19998023_DEL [dm3] 2L_19998023_DEL [dm6]	ATTA	A	9.003e^-7	0.29	INTRON CG43861
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	1.161e^-6	0.29	INTERGENIC
2R	17903500	2R_17903500_SNP [dm3] 2R_22015995_SNP [dm6]	G	C	1.428e^-6	0.29	INTRON CG34370
2R	17903513	2R_17903513_SNP [dm3] 2R_22016008_SNP [dm6]	T	C	1.605e^-6	0.29	INTRON CG34370
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	2.030e^-6	0.29	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21794488	3R_21794488_DEL [dm3] 3R_25968766_DEL [dm6]	GG	G	2.321e^-6	0.29	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11807411	2L_11807411_SNP [dm3] 2L_11807411_SNP [dm6]	C	T	2.554e^-6	0.29	INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13989584	3L_13989584_SNP [dm3] 3L_13996484_SNP [dm6]	C	T	2.742e^-6	0.29	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	2.943e^-6	0.29	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	2.943e^-6	0.29	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	3.386e^-6	0.29	INTRON axo
3R	10605145	3R_10605145_SNP [dm3] 3R_14779423_SNP [dm6]	A	G	3.598e^-6	0.29	INTRON jvl	TF binding site mE1_TFBS_HSA
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	3.809e^-6	0.29	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	3.809e^-6	0.29	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	3.809e^-6	0.29	INTRON axo
3L	12131257	3L_12131257_SNP [dm3] 3L_12138157_SNP [dm6]	G	A	3.881e^-6	0.29	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	4969342	3R_4969342_SNP [dm3] 3R_9143620_SNP [dm6]	A	G	4.167e^-6	0.29	INTRON pum
2R	17864733	2R_17864733_SNP [dm3] 2R_21977228_SNP [dm6]	A	G	4.214e^-6	0.29	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304 & 1 other	TF binding site mE1_TFBS_sens
2R	12170376	2R_12170376_SNP [dm3] 2R_16282871_SNP [dm6]	G	A	4.241e^-6	0.29	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	4.368e^-6	0.29	INTERGENIC
2L	11807484	2L_11807484_SNP [dm3] 2L_11807484_SNP [dm6]	C	T	4.534e^-6	0.29	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20249665	2R_20249665_SNP [dm3] 2R_24362142_SNP [dm6]	C	T	4.661e^-6	0.29	INTRON bs & 1 other
2L	1935113	2L_1935113_SNP [dm3] 2L_1935113_SNP [dm6]	C	T	4.688e^-6	0.29	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
2L	14434394	2L_14434394_SNP [dm3] 2L_14434394_SNP [dm6]	C	A	4.767e^-6	0.29	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18789180	3L_18789180_SNP [dm3] 3L_18796080_SNP [dm6]	G	C	5.138e^-6	0.29	INTRON ftz-f1
3L	11122657	3L_11122657_SNP [dm3] 3L_11129557_SNP [dm6]	A	G	5.220e^-6	0.29	UTR_5_PRIME CG42575
X	5242341	X_5242341_INS [dm3] X_5348308_INS [dm6]	T	TT	5.657e^-6	0.29	INTRON SK
2L	14434437	2L_14434437_SNP [dm3] 2L_14434437_SNP [dm6]	G	C	5.702e^-6	0.29	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	4965180	3R_4965180_SNP [dm3] 3R_9139458_SNP [dm6]	C	T	5.779e^-6	0.29	INTRON pum
3R	4969407	3R_4969407_SNP [dm3] 3R_9143685_SNP [dm6]	T	C	5.887e^-6	0.29	INTRON pum
2L	11807939	2L_11807939_SNP [dm3] 2L_11807939_SNP [dm6]	A	G	5.944e^-6	0.29	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21794477	3R_21794477_SNP [dm3] 3R_25968755_SNP [dm6]	C	T	6.201e^-6	0.29	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6161964	3L_6161964_SNP [dm3] 3L_6168864_SNP [dm6]	A	G	6.328e^-6	0.29	UTR_3_PRIME CG10289 DOWNSTREAM CG10289	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16617572	2R_16617572_SNP [dm3] 2R_20730067_SNP [dm6]	C	G	6.401e^-6	0.29	NON_SYNONYMOUS_CODING CG13442 INTRON dpr
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	6.604e^-6	0.29	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	19998084	2L_19998084_DEL [dm3] 2L_19998084_DEL [dm6]	CC	C	6.723e^-6	0.29	INTRON CG43861
3R	6093084	3R_6093084_SNP [dm3] 3R_10267362_SNP [dm6]	C	T	6.834e^-6	0.29	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11807626	2L_11807626_SNP [dm3] 2L_11807626_SNP [dm6]	G	C	6.841e^-6	0.29	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	7.085e^-6	0.29	INTRON axo
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	7.276e^-6	0.29	INTRON fz2
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	7.276e^-6	0.29	INTRON fz2
2L	14434438	2L_14434438_SNP [dm3] 2L_14434438_SNP [dm6]	C	T	7.364e^-6	0.29	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19818313	2L_19818313_SNP [dm3] 2L_19818313_SNP [dm6]	A	T	7.459e^-6	0.29	INTRON sick	transposable element FlyBase
3L	5345456	3L_5345456_SNP [dm3] 3L_5352356_SNP [dm6]	T	C	7.585e^-6	0.29	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	14434264	2L_14434264_SNP [dm3] 2L_14434264_SNP [dm6]	A	T	7.832e^-6	0.29	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	21330687	3L_21330687_SNP [dm3] 3L_21337587_SNP [dm6]	T	C	7.836e^-6	0.29	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	7.896e^-6	0.29	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	7.998e^-6	0.29	INTRON Gycbeta100B
3L	11124419	3L_11124419_SNP [dm3] 3L_11131319_SNP [dm6]	G	T	8.456e^-6	0.29	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	11124420	3L_11124420_SNP [dm3] 3L_11131320_SNP [dm6]	G	A	8.456e^-6	0.29	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
2L	8781605	2L_8781605_SNP [dm3] 2L_8781605_SNP [dm6]	A	G	8.461e^-6	0.29	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
3R	6093082	3R_6093082_SNP [dm3] 3R_10267360_SNP [dm6]	C	T	8.515e^-6	0.29	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13424543	2L_13424543_SNP [dm3] 2L_13424543_SNP [dm6]	C	T	8.804e^-6	0.29	INTRON CG42784
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	8.940e^-6	0.29	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	8.940e^-6	0.29	INTRON axo
3L	13989580	3L_13989580_SNP [dm3] 3L_13996480_SNP [dm6]	C	T	8.942e^-6	0.29	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
3R	6307201	3R_6307201_SNP [dm3] 3R_10481479_SNP [dm6]	A	G	9.193e^-6	0.293	INTERGENIC
3L	5979467	3L_5979467_SNP [dm3] 3L_5986367_SNP [dm6]	T	C	9.391e^-6	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22850541	3L_22850541_SNP [dm3] 3L_22857441_SNP [dm6]	T	C	9.567e^-6	0.295	INTERGENIC
3L	6535050	3L_6535050_SNP [dm3] 3L_6541950_SNP [dm6]	T	C	1.006e^-5	0.305	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5879960	2L_5879960_SNP [dm3] 2L_5879960_SNP [dm6]	T	A	1.030e^-5	0.307	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14434177	2L_14434177_SNP [dm3] 2L_14434177_SNP [dm6]	C	T	1.082e^-5	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17253880	2R_17253880_SNP [dm3] 2R_21366375_SNP [dm6]	A	G	1.097e^-5	0.316	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	1.133e^-5	0.322	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2500540	3L_2500540_SNP [dm3] 3L_2500540_SNP [dm6]	A	T	1.213e^-5	0.339	INTRON CG16758
2R	17752132	2R_17752132_SNP [dm3] 2R_21864627_SNP [dm6]	T	C	1.252e^-5	0.339	DOWNSTREAM comr INTERGENIC
2R	17752140	2R_17752140_SNP [dm3] 2R_21864635_SNP [dm6]	C	T	1.252e^-5	0.339	DOWNSTREAM comr INTERGENIC
2R	12170506	2R_12170506_SNP [dm3] 2R_16283001_SNP [dm6]	T	G	1.274e^-5	0.34	UPSTREAM CG9068 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22848499	3L_22848499_SNP [dm3] 3L_22855399_SNP [dm6]	T	G	1.351e^-5	0.348	NON_SYNONYMOUS_CODING CG32459 DOWNSTREAM CR43426
3L	15285419	3L_15285419_SNP [dm3] 3L_15292319_SNP [dm6]	C	G	1.360e^-5	0.348	INTERGENIC
3L	16019761	3L_16019761_SNP [dm3] 3L_16026661_SNP [dm6]	A	C	1.361e^-5	0.348	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26982549	3R_26982549_SNP [dm3] 3R_31156827_SNP [dm6]	A	G	1.377e^-5	0.348	INTRON Gycbeta100B
3L	17937594	3L_17937594_SNP [dm3] 3L_17944494_SNP [dm6]	T	C	1.452e^-5	0.361	INTRON CG43174
2R	17750945	2R_17750945_SNP [dm3] 2R_21863440_SNP [dm6]	A	C	1.566e^-5	0.381	INTERGENIC
3R	968557	3R_968557_SNP [dm3] 3R_5142835_SNP [dm6]	C	T	1.577e^-5	0.381	INTERGENIC
2L	4118577	2L_4118577_SNP [dm3] 2L_4118577_SNP [dm6]	C	G	1.592e^-5	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2985251	3L_2985251_SNP [dm3] 3L_2985251_SNP [dm6]	T	G	1.665e^-5	0.381	INTERGENIC
2R	17862746	2R_17862746_SNP [dm3] 2R_21975241_SNP [dm6]	G	A	1.760e^-5	0.381	INTRON CG9304
2R	17862756	2R_17862756_DEL [dm3] 2R_21975251_DEL [dm6]	CGAAC	C	1.760e^-5	0.381	INTRON CG9304
2R	17862785	2R_17862785_SNP [dm3] 2R_21975280_SNP [dm6]	C	A	1.760e^-5	0.381	INTRON CG9304
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	1.800e^-5	0.381	INTRON Gfrl
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	1.830e^-5	0.381	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	1.830e^-5	0.381	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	1.830e^-5	0.381	INTRON axo
3R	6710571	3R_6710571_SNP [dm3] 3R_10884849_SNP [dm6]	G	A	1.843e^-5	0.381	UTR_5_PRIME CG14696 UPSTREAM Leash	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8874978	2L_8874978_SNP [dm3] 2L_8874978_SNP [dm6]	T	C	1.906e^-5	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12131675	3L_12131675_SNP [dm3] 3L_12138575_SNP [dm6]	T	A	1.933e^-5	0.381	UTR_5_PRIME l_3_neo18 UPSTREAM RhoGAP68F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	7398985	3R_7398985_SNP [dm3] 3R_11573263_SNP [dm6]	A	G	1.950e^-5	0.381	SYNONYMOUS_CODING Mrp4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	366653	2L_366653_DEL [dm3] 2L_366653_DEL [dm6]	ATTAAAATCAATCA...	A	1.983e^-5	0.381	INTERGENIC
2L	366790	2L_366790_SNP [dm3] 2L_366790_SNP [dm6]	T	C	1.983e^-5	0.381	INTERGENIC
2L	12619172	2L_12619172_SNP [dm3] 2L_12619172_SNP [dm6]	C	T	1.984e^-5	0.381	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	12766474	X_12766474_SNP [dm3] X_12872441_SNP [dm6]	T	C	2.002e^-5	0.381	INTRON Pde9
2L	4118566	2L_4118566_SNP [dm3] 2L_4118566_SNP [dm6]	A	C	2.013e^-5	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2985548	3L_2985548_SNP [dm3] 3L_2985548_SNP [dm6]	G	A	2.057e^-5	0.381	INTERGENIC
2L	12766802	2L_12766802_INS [dm3] 2L_12766802_INS [dm6]	T	TAAA	2.074e^-5	0.381	INTERGENIC
2L	12767017	2L_12767017_SNP [dm3] 2L_12767017_SNP [dm6]	T	A	2.074e^-5	0.381	INTERGENIC
2L	12767018	2L_12767018_DEL [dm3] 2L_12767018_DEL [dm6]	TGATAATCAACGG...	T	2.074e^-5	0.381	INTERGENIC
2R	17862585	2R_17862585_SNP [dm3] 2R_21975080_SNP [dm6]	G	A	2.088e^-5	0.381	SYNONYMOUS_CODING CG9304
3L	6535073	3L_6535073_SNP [dm3] 3L_6541973_SNP [dm6]	A	T	2.096e^-5	0.381	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18467494	3R_18467494_SNP [dm3] 3R_22641772_SNP [dm6]	C	T	2.144e^-5	0.381	INTRON CG45058
3R	18467505	3R_18467505_SNP [dm3] 3R_22641783_SNP [dm6]	A	T	2.144e^-5	0.381	INTRON CG45058
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	2.152e^-5	0.381	UPSTREAM CG32074 INTRON CG42575
3L	18071987	3L_18071987_SNP [dm3] 3L_18078887_SNP [dm6]	T	A	2.190e^-5	0.381	DOWNSTREAM CR45392 INTERGENIC
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	2.194e^-5	0.381	INTRON axo
2L	19994494	2L_19994494_SNP [dm3] 2L_19994494_SNP [dm6]	A	C	2.205e^-5	0.381	INTRON CG43861	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	381821	2L_381821_DEL [dm3] 2L_381821_DEL [dm6]	GTT	G	2.263e^-5	0.381	INTRON al	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1887676	3L_1887676_SNP [dm3] 3L_1887676_SNP [dm6]	T	C	2.278e^-5	0.381	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	7263597	3L_7263597_SNP [dm3] 3L_7270497_SNP [dm6]	A	G	2.303e^-5	0.381	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21330738	3L_21330738_SNP [dm3] 3L_21337638_SNP [dm6]	C	T	2.305e^-5	0.381	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
2R	11304765	2R_11304765_SNP [dm3] 2R_15417260_SNP [dm6]	T	C	2.329e^-5	0.381	INTRON CG43729
3R	27354756	3R_27354756_SNP [dm3] 3R_31529034_SNP [dm6]	T	A	2.351e^-5	0.381	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11155556	2R_11155556_SNP [dm3] 2R_15268051_SNP [dm6]	T	C	2.378e^-5	0.381	INTRON Trpm
3R	23410861	3R_23410861_SNP [dm3] 3R_27585139_SNP [dm6]	G	A	2.412e^-5	0.381	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
2L	5879931	2L_5879931_SNP [dm3] 2L_5879931_SNP [dm6]	A	C	2.428e^-5	0.381	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16457507	2R_16457507_SNP [dm3] 2R_20570002_SNP [dm6]	A	T	2.443e^-5	0.381	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1887675	3L_1887675_SNP [dm3] 3L_1887675_SNP [dm6]	G	A	2.445e^-5	0.381	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	13414987	2L_13414987_SNP [dm3] 2L_13414987_SNP [dm6]	G	T	2.454e^-5	0.381	UPSTREAM CG42784 & 2 others INTERGENIC
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	2.549e^-5	0.382	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	2.593e^-5	0.382	INTRON bun
3L	21252913	3L_21252913_SNP [dm3] 3L_21259813_SNP [dm6]	A	G	2.616e^-5	0.382	INTRON Eip78C
2L	365892	2L_365892_SNP [dm3] 2L_365892_SNP [dm6]	C	T	2.620e^-5	0.382	INTERGENIC
2L	366797	2L_366797_INS [dm3] 2L_366797_INS [dm6]	T	GC	2.620e^-5	0.382	INTERGENIC
2L	366799	2L_366799_SNP [dm3] 2L_366799_SNP [dm6]	G	C	2.620e^-5	0.382	INTERGENIC
2L	12681109	2L_12681109_SNP [dm3] 2L_12681109_SNP [dm6]	C	T	2.638e^-5	0.382	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21328231	3L_21328231_SNP [dm3] 3L_21335131_SNP [dm6]	A	G	2.672e^-5	0.382	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3R	2253534	3R_2253534_SNP [dm3] 3R_6427812_SNP [dm6]	T	G	2.707e^-5	0.382	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16056420	3L_16056420_SNP [dm3] 3L_16063320_SNP [dm6]	T	C	2.767e^-5	0.382	UTR_3_PRIME Mbs INTRON Mbs
3L	6535290	3L_6535290_SNP [dm3] 3L_6542190_SNP [dm6]	T	C	2.797e^-5	0.382	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535316	3L_6535316_SNP [dm3] 3L_6542216_SNP [dm6]	T	C	2.797e^-5	0.382	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535402	3L_6535402_SNP [dm3] 3L_6542302_SNP [dm6]	C	T	2.797e^-5	0.382	INTRON sfl
3L	6535404	3L_6535404_SNP [dm3] 3L_6542304_SNP [dm6]	C	A	2.797e^-5	0.382	INTRON sfl
2L	2649709	2L_2649709_SNP [dm3] 2L_2649709_SNP [dm6]	T	C	2.822e^-5	0.382	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
X	8113500	X_8113500_SNP [dm3] X_8219467_SNP [dm6]	T	A	2.863e^-5	0.382	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12128964	3L_12128964_SNP [dm3] 3L_12135864_SNP [dm6]	C	T	2.887e^-5	0.382	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12129837	3L_12129837_SNP [dm3] 3L_12136737_SNP [dm6]	A	T	2.887e^-5	0.382	UPSTREAM Atg12 & 1 other DOWNSTREAM l_3_neo18 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12130109	3L_12130109_SNP [dm3] 3L_12137009_SNP [dm6]	C	A	2.887e^-5	0.382	UTR_5_PRIME Atg12 UPSTREAM CG5645 DOWNSTREAM l_3_neo18
3L	12130243	3L_12130243_DEL [dm3] 3L_12137143_DEL [dm6]	CTT	C	2.887e^-5	0.382	UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12
3L	2985143	3L_2985143_SNP [dm3] 3L_2985143_SNP [dm6]	G	A	2.903e^-5	0.382	INTERGENIC
3L	1853061	3L_1853061_SNP [dm3] 3L_1853061_SNP [dm6]	G	T	2.932e^-5	0.382	INTRON CG13936
3R	17779047	3R_17779047_INS [dm3] 3R_21953325_INS [dm6]	T	TT	2.948e^-5	0.382	INTRON Eip93F
3L	11108281	3L_11108281_SNP [dm3] 3L_11115181_SNP [dm6]	G	A	2.965e^-5	0.382	SYNONYMOUS_CODING fd68A
3L	10732027	3L_10732027_SNP [dm3] 3L_10738927_SNP [dm6]	T	C	2.986e^-5	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2985390	3L_2985390_SNP [dm3] 3L_2985390_SNP [dm6]	T	A	3.027e^-5	0.385	INTERGENIC
3R	6307151	3R_6307151_SNP [dm3] 3R_10481429_SNP [dm6]	C	A	3.056e^-5	0.385	INTERGENIC
3L	16019980	3L_16019980_SNP [dm3] 3L_16026880_SNP [dm6]	C	T	3.120e^-5	0.391	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9151139	2L_9151139_INS [dm3] 2L_9151139_INS [dm6]	A	AA	3.159e^-5	0.393	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	3.196e^-5	0.395	INTRON axo
3R	968476	3R_968476_INS [dm3] 3R_5142754_INS [dm6]	A	ATAA	3.221e^-5	0.395	INTERGENIC
2L	10629538	2L_10629538_SNP [dm3] 2L_10629538_SNP [dm6]	C	G	3.240e^-5	0.395	NON_SYNONYMOUS_CODING CG7329
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	3.306e^-5	0.399	UPSTREAM CG44252 INTERGENIC
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	3.336e^-5	0.399	INTRON CG32982
2R	14346359	2R_14346359_SNP [dm3] 2R_18458854_SNP [dm6]	A	C	3.342e^-5	0.399	DOWNSTREAM CG30116 INTRON CG30116
X	5468501	X_5468501_SNP [dm3] X_5574468_SNP [dm6]	C	T	3.387e^-5	0.4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	3.394e^-5	0.4	INTRON sda
2R	17863068	2R_17863068_DEL [dm3] 2R_21975563_DEL [dm6]	GCTAAATGAAACACG...	G	3.469e^-5	0.407	UTR_3_PRIME CG9304
3L	3145362	3L_3145362_SNP [dm3] 3L_3145362_SNP [dm6]	G	A	3.530e^-5	0.411	DOWNSTREAM CG12082 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	3.550e^-5	0.411	INTERGENIC
3R	10817274	3R_10817274_SNP [dm3] 3R_14991552_SNP [dm6]	A	C	3.629e^-5	0.417	INTERGENIC
3L	12133468	3L_12133468_SNP [dm3] 3L_12140368_SNP [dm6]	G	A	3.706e^-5	0.422	INTRON RhoGAP68F
3R	24579641	3R_24579641_SNP [dm3] 3R_28753919_SNP [dm6]	C	A	3.716e^-5	0.422	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7630115	3L_7630115_SNP [dm3] 3L_7637015_SNP [dm6]	A	T	3.744e^-5	0.422	SYNONYMOUS_CODING CG33275
3R	27409734	3R_27409734_SNP [dm3] 3R_31584012_SNP [dm6]	A	C	3.764e^-5	0.422	NON_SYNONYMOUS_CODING rod
X	4682238	X_4682238_INS [dm3] X_4788205_INS [dm6]	A	AA	3.848e^-5	0.429	INTERGENIC
3L	16755291	3L_16755291_SNP [dm3] 3L_16762191_SNP [dm6]	T	A	3.940e^-5	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17334235	2R_17334235_SNP [dm3] 2R_21446730_SNP [dm6]	T	C	3.949e^-5	0.43	INTRON Sdc
2L	12681166	2L_12681166_SNP [dm3] 2L_12681166_SNP [dm6]	T	C	3.950e^-5	0.43	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4204566	2L_4204566_SNP [dm3] 2L_4204566_SNP [dm6]	C	T	3.954e^-5	0.43	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	2500473	3L_2500473_SNP [dm3] 3L_2500473_SNP [dm6]	C	A	4.042e^-5	0.437	INTRON CG16758	TF binding site mE1_TFBS_chinmo
3L	2985085	3L_2985085_SNP [dm3] 3L_2985085_SNP [dm6]	G	C	4.151e^-5	0.444	INTERGENIC
2R	17903806	2R_17903806_SNP [dm3] 2R_22016301_SNP [dm6]	A	G	4.172e^-5	0.444	INTRON CG34370
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	4.193e^-5	0.444	INTRON CG17018	transposable element FlyBase
2L	8855562	2L_8855562_SNP [dm3] 2L_8855562_SNP [dm6]	A	G	4.223e^-5	0.444	INTERGENIC
2R	17750934	2R_17750934_SNP [dm3] 2R_21863429_SNP [dm6]	C	T	4.229e^-5	0.444	INTERGENIC
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	4.306e^-5	0.447	INTRON Sox21b
3L	11663985	3L_11663985_SNP [dm3] 3L_11670885_SNP [dm6]	G	A	4.328e^-5	0.447	INTRON CG32085
3L	1881080	3L_1881080_SNP [dm3] 3L_1881080_SNP [dm6]	C	T	4.335e^-5	0.447	INTRON CG13937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3354461	3L_3354461_SNP [dm3] 3L_3354461_SNP [dm6]	G	T	4.415e^-5	0.453	INTRON kst	TF binding site mE1_TFBS_cad
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	4.463e^-5	0.455	INTRON axo
3L	6496851	3L_6496851_SNP [dm3] 3L_6503751_SNP [dm6]	C	T	4.540e^-5	0.458	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	12084100	2L_12084100_SNP [dm3] 2L_12084100_SNP [dm6]	A	G	4.547e^-5	0.458	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21338536	3L_21338536_SNP [dm3] 3L_21345436_SNP [dm6]	T	C	4.564e^-5	0.458	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11000608	3L_11000608_SNP [dm3] 3L_11007508_SNP [dm6]	C	T	4.634e^-5	0.463	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4683270	X_4683270_SNP [dm3] X_4789237_SNP [dm6]	A	G	4.686e^-5	0.464	INTERGENIC
3L	7632926	3L_7632926_SNP [dm3] 3L_7639826_SNP [dm6]	A	T	4.702e^-5	0.464	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	4.721e^-5	0.464	INTRON fred
2R	18402274	2R_18402274_SNP [dm3] 2R_22514769_SNP [dm6]	G	A	4.795e^-5	0.468	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	3844904	3L_3844904_SNP [dm3] 3L_3844904_SNP [dm6]	A	T	4.828e^-5	0.469	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	13266809	3L_13266809_SNP [dm3] 3L_13273709_SNP [dm6]	C	G	4.901e^-5	0.472	INTRON caps
3L	12128460	3L_12128460_SNP [dm3] 3L_12135360_SNP [dm6]	G	A	4.923e^-5	0.472	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2186921	2L_2186921_SNP [dm3] 2L_2186921_SNP [dm6]	T	C	4.942e^-5	0.472	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19931879	2L_19931879_SNP [dm3] 2L_19931879_SNP [dm6]	A	G	5.055e^-5	0.481	INTRON sick
2R	10334015	2R_10334015_SNP [dm3] 2R_14446510_SNP [dm6]	G	A	5.089e^-5	0.481	INTRON Oaz
3R	25043456	3R_25043456_SNP [dm3] 3R_29217734_SNP [dm6]	G	A	5.161e^-5	0.481	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	5.167e^-5	0.481	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13295391	3L_13295391_SNP [dm3] 3L_13302291_SNP [dm6]	C	A	5.192e^-5	0.481	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	2223902	3R_2223902_SNP [dm3] 3R_6398180_SNP [dm6]	G	C	5.208e^-5	0.481	INTRON Dmtn	TF binding site mE1_TFBS_cnc
3R	10604014	3R_10604014_SNP [dm3] 3R_14778292_SNP [dm6]	A	T	5.217e^-5	0.481	INTRON jvl
2R	5689243	2R_5689243_SNP [dm3] 2R_9801738_SNP [dm6]	T	A	5.287e^-5	0.485	INTRON CG1688
2L	9147760	2L_9147760_SNP [dm3] 2L_9147760_SNP [dm6]	T	C	5.325e^-5	0.486	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	8379057	3R_8379057_SNP [dm3] 3R_12553335_SNP [dm6]	C	A	5.436e^-5	0.491	INTRON Octbeta2R
3R	21794368	3R_21794368_INS [dm3] 3R_25968646_INS [dm6]	T	TT	5.436e^-5	0.491	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19990586	2L_19990586_SNP [dm3] 2L_19990586_SNP [dm6]	G	T	5.507e^-5	0.493	INTRON CG43861
3L	1843145	3L_1843145_SNP [dm3] 3L_1843145_SNP [dm6]	C	T	5.507e^-5	0.493	INTERGENIC
3R	8379044	3R_8379044_SNP [dm3] 3R_12553322_SNP [dm6]	T	G	5.578e^-5	0.495	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_sna
3L	10227627	3L_10227627_DEL [dm3] 3L_10234527_DEL [dm6]	GG	G	5.588e^-5	0.495	INTERGENIC
3L	4878188	3L_4878188_SNP [dm3] 3L_4878188_SNP [dm6]	T	C	5.669e^-5	0.5	INTRON CG17150
3L	21142895	3L_21142895_SNP [dm3] 3L_21149795_SNP [dm6]	A	G	5.697e^-5	0.5	INTRON Ac78C
3L	21322782	3L_21322782_SNP [dm3] 3L_21329682_SNP [dm6]	C	A	5.741e^-5	0.501	INTRON Rab26
3R	6906223	3R_6906223_SNP [dm3] 3R_11080501_SNP [dm6]	A	C	5.768e^-5	0.501	INTERGENIC
2R	9663509	2R_9663509_SNP [dm3] 2R_13776004_SNP [dm6]	G	C	5.859e^-5	0.504	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17586656	3L_17586656_SNP [dm3] 3L_17593556_SNP [dm6]	C	T	5.885e^-5	0.504	INTRON Eip74EF
3L	3637480	3L_3637480_SNP [dm3] 3L_3637480_SNP [dm6]	G	A	5.926e^-5	0.504	INTRON dar1
3L	2986797	3L_2986797_SNP [dm3] 3L_2986797_SNP [dm6]	C	G	5.953e^-5	0.504	INTERGENIC
3R	6093009	3R_6093009_SNP [dm3] 3R_10267287_SNP [dm6]	G	C	5.979e^-5	0.504	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	6.038e^-5	0.504	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9147938	2L_9147938_SNP [dm3] 2L_9147938_SNP [dm6]	T	G	6.053e^-5	0.504	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	21322786	3L_21322786_INS [dm3] 3L_21329686_INS [dm6]	A	ATTT	6.057e^-5	0.504	INTRON Rab26
3R	25043447	3R_25043447_SNP [dm3] 3R_29217725_SNP [dm6]	G	C	6.106e^-5	0.504	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25043450	3R_25043450_SNP [dm3] 3R_29217728_SNP [dm6]	G	A	6.106e^-5	0.504	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16019910	3L_16019910_SNP [dm3] 3L_16026810_SNP [dm6]	T	G	6.109e^-5	0.504	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14325595	X_14325595_SNP [dm3] X_14431562_SNP [dm6]	C	A	6.134e^-5	0.504	INTRON dpr8
3L	11536340	3L_11536340_SNP [dm3] 3L_11543240_SNP [dm6]	A	T	6.160e^-5	0.504	INTRON Mob2
3R	20934671	3R_20934671_SNP [dm3] 3R_25108949_SNP [dm6]	G	A	6.231e^-5	0.504	SYNONYMOUS_CODING CG34027 DOWNSTREAM CG13650
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	6.253e^-5	0.504	INTRON CG1688
2R	10334016	2R_10334016_SNP [dm3] 2R_14446511_SNP [dm6]	C	T	6.287e^-5	0.504	INTRON Oaz
3R	23411278	3R_23411278_SNP [dm3] 3R_27585556_SNP [dm6]	T	C	6.298e^-5	0.504	UTR_3_PRIME raps DOWNSTREAM CG5639
3L	14095880	3L_14095880_SNP [dm3] 3L_14102780_SNP [dm6]	A	C	6.313e^-5	0.504	DOWNSTREAM Sox21a INTERGENIC
3L	3637402	3L_3637402_SNP [dm3] 3L_3637402_SNP [dm6]	A	G	6.340e^-5	0.504	INTRON dar1
3L	2500518	3L_2500518_SNP [dm3] 3L_2500518_SNP [dm6]	T	A	6.368e^-5	0.504	INTRON CG16758	TF binding site mE1_TFBS_chinmo
2L	7006897	2L_7006897_SNP [dm3] 2L_7006897_SNP [dm6]	C	T	6.385e^-5	0.504	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	2713498	X_2713498_SNP [dm3] X_2819465_SNP [dm6]	T	C	6.529e^-5	0.506	INTRON kirre
3L	5377811	3L_5377811_SNP [dm3] 3L_5384711_SNP [dm6]	T	A	6.530e^-5	0.506	INTERGENIC
3R	25738159	3R_25738159_SNP [dm3] 3R_29912437_SNP [dm6]	A	C	6.535e^-5	0.506	DOWNSTREAM Capa INTRON CG31036
3R	6827471	3R_6827471_SNP [dm3] 3R_11001749_SNP [dm6]	C	T	6.584e^-5	0.506	INTRON CG34114
3L	12325323	3L_12325323_SNP [dm3] 3L_12332223_SNP [dm6]	T	G	6.636e^-5	0.506	INTRON CG32105
3L	11551811	3L_11551811_SNP [dm3] 3L_11558711_SNP [dm6]	G	A	6.647e^-5	0.506	UTR_5_PRIME Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
2R	18903339	2R_18903339_SNP [dm3] 2R_23015816_SNP [dm6]	C	T	6.666e^-5	0.506	INTRON twi & 1 other
3L	1900087	3L_1900087_SNP [dm3] 3L_1900087_SNP [dm6]	A	G	6.672e^-5	0.506	DOWNSTREAM CG1887 INTRON CG1887
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	6.741e^-5	0.506	DOWNSTREAM CR32027 INTRON Indy
3R	9946544	3R_9946544_SNP [dm3] 3R_14120822_SNP [dm6]	T	C	6.848e^-5	0.506	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16567608	2R_16567608_SNP [dm3] 2R_20680103_SNP [dm6]	T	C	6.875e^-5	0.506	INTERGENIC
3L	15285245	3L_15285245_SNP [dm3] 3L_15292145_SNP [dm6]	C	T	6.878e^-5	0.506	INTERGENIC
2L	19202065	2L_19202065_SNP [dm3] 2L_19202065_SNP [dm6]	C	T	6.880e^-5	0.506	INTRON drl	regulatory region REDfly_CRMs
2L	19202073	2L_19202073_SNP [dm3] 2L_19202073_SNP [dm6]	T	C	6.880e^-5	0.506	INTRON drl	regulatory region REDfly_CRMs
2L	19202079	2L_19202079_SNP [dm3] 2L_19202079_SNP [dm6]	A	G	6.880e^-5	0.506	INTRON drl	regulatory region REDfly_CRMs
3L	747174	3L_747174_SNP [dm3] 3L_747174_SNP [dm6]	T	C	6.887e^-5	0.506	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17646209	3L_17646209_SNP [dm3] 3L_17653109_SNP [dm6]	C	T	6.928e^-5	0.506	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6929182	2R_6929182_INS [dm3] 2R_11041677_INS [dm6]	G	GAGGTGGCTG	6.946e^-5	0.506	INTRON luna	TF binding site mE1_TFBS_cad
2R	5687931	2R_5687931_SNP [dm3] 2R_9800426_SNP [dm6]	C	G	6.983e^-5	0.506	INTRON CG1688
3R	25798613	3R_25798613_SNP [dm3] 3R_29972891_SNP [dm6]	G	A	7.009e^-5	0.506	INTERGENIC
3L	11109054	3L_11109054_SNP [dm3] 3L_11115954_SNP [dm6]	G	A	7.011e^-5	0.506	SYNONYMOUS_CODING fd68A
2L	4118617	2L_4118617_SNP [dm3] 2L_4118617_SNP [dm6]	T	G	7.032e^-5	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4253096	3R_4253096_SNP [dm3] 3R_8427374_SNP [dm6]	G	T	7.116e^-5	0.506	INTRON CG45263
X	2611629	X_2611629_SNP [dm3] X_2717596_SNP [dm6]	T	C	7.157e^-5	0.506	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	10115037	3L_10115037_SNP [dm3] 3L_10121937_SNP [dm6]	C	T	7.227e^-5	0.506	INTRON dpr6
3R	22746594	3R_22746594_SNP [dm3] 3R_26920872_SNP [dm6]	G	C	7.253e^-5	0.506	INTRON sda
3L	3432086	3L_3432086_SNP [dm3] 3L_3432086_SNP [dm6]	C	T	7.310e^-5	0.506	INTRON eIF5B
3L	17646185	3L_17646185_SNP [dm3] 3L_17653085_SNP [dm6]	G	A	7.311e^-5	0.506	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	7.316e^-5	0.506	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	18070365	3L_18070365_SNP [dm3] 3L_18077265_SNP [dm6]	C	T	7.347e^-5	0.506	UPSTREAM CR45392 INTERGENIC
X	9256462	X_9256462_SNP [dm3] X_9362429_SNP [dm6]	T	C	7.379e^-5	0.506	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6535324	3L_6535324_SNP [dm3] 3L_6542224_SNP [dm6]	C	A	7.507e^-5	0.506	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	7093439	3L_7093439_SNP [dm3] 3L_7100339_SNP [dm6]	T	C	7.518e^-5	0.506	INTRON form3
3R	23430904	3R_23430904_SNP [dm3] 3R_27605182_SNP [dm6]	C	G	7.533e^-5	0.506	INTRON dsd	TF binding site mE1_TFBS_cad
2L	12959894	2L_12959894_SNP [dm3] 2L_12959894_SNP [dm6]	A	G	7.542e^-5	0.506	INTERGENIC
2L	359421	2L_359421_SNP [dm3] 2L_359421_SNP [dm6]	A	T	7.675e^-5	0.506	INTERGENIC
3R	965200	3R_965200_SNP [dm3] 3R_5139478_SNP [dm6]	C	A	7.703e^-5	0.506	UPSTREAM CG12589 INTERGENIC
3L	2982341	3L_2982341_SNP [dm3] 3L_2982341_SNP [dm6]	T	C	7.725e^-5	0.506	SYNONYMOUS_CODING CG2107	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2983228	3L_2983228_SNP [dm3] 3L_2983228_SNP [dm6]	T	C	7.725e^-5	0.506	NON_SYNONYMOUS_CODING CG2107
3L	2983610	3L_2983610_SNP [dm3] 3L_2983610_SNP [dm6]	T	A	7.725e^-5	0.506	DOWNSTREAM CG2107 INTERGENIC
3L	2983612	3L_2983612_SNP [dm3] 3L_2983612_SNP [dm6]	C	G	7.725e^-5	0.506	DOWNSTREAM CG2107 INTERGENIC
3L	2985224	3L_2985224_SNP [dm3] 3L_2985224_SNP [dm6]	A	G	7.725e^-5	0.506	INTERGENIC
3L	2985892	3L_2985892_SNP [dm3] 3L_2985892_SNP [dm6]	G	A	7.725e^-5	0.506	INTERGENIC
3L	2987751	3L_2987751_SNP [dm3] 3L_2987751_SNP [dm6]	A	C	7.725e^-5	0.506	INTERGENIC
3R	6826358	3R_6826358_SNP [dm3] 3R_11000636_SNP [dm6]	G	A	7.734e^-5	0.506	INTRON CG34114
3L	8184283	3L_8184283_SNP [dm3] 3L_8191183_SNP [dm6]	A	G	7.763e^-5	0.506	UPSTREAM MED24 DOWNSTREAM CG7387 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	7.799e^-5	0.506	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20593656	2R_20593656_SNP [dm3] 2R_24706133_SNP [dm6]	C	A	7.812e^-5	0.506	INTRON Mid1
2R	9664820	2R_9664820_SNP [dm3] 2R_13777315_SNP [dm6]	A	G	7.853e^-5	0.506	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
3L	7632929	3L_7632929_SNP [dm3] 3L_7639829_SNP [dm6]	A	C	7.859e^-5	0.506	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	12117161	2L_12117161_SNP [dm3] 2L_12117161_SNP [dm6]	A	G	7.871e^-5	0.506	INTRON CG17211
3L	2355726	3L_2355726_SNP [dm3] 3L_2355726_SNP [dm6]	C	T	7.927e^-5	0.506	INTERGENIC
3L	2355729	3L_2355729_SNP [dm3] 3L_2355729_SNP [dm6]	A	C	7.927e^-5	0.506	INTERGENIC
3L	3354469	3L_3354469_SNP [dm3] 3L_3354469_SNP [dm6]	T	C	7.942e^-5	0.506	INTRON kst	TF binding site mE1_TFBS_cad
X	11152349	X_11152349_SNP [dm3] X_11258316_SNP [dm6]	T	G	7.956e^-5	0.506	INTRON CG44422
3L	18837068	3L_18837068_DEL [dm3] 3L_18843968_DEL [dm6]	ATACT	A	7.970e^-5	0.506	INTRON Indy
3L	17639395	3L_17639395_SNP [dm3] 3L_17646295_SNP [dm6]	G	C	7.988e^-5	0.506	NON_SYNONYMOUS_CODING CG43085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	16987827	2R_16987827_SNP [dm3] 2R_21100322_SNP [dm6]	T	C	8.083e^-5	0.51	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3R	10567761	3R_10567761_SNP [dm3] 3R_14742039_SNP [dm6]	T	C	8.116e^-5	0.51	UTR_5_PRIME jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	17325410	X_17325410_SNP [dm3] X_17431377_SNP [dm6]	A	G	8.296e^-5	0.517	INTRON CG12994
2R	5295407	2R_5295407_SNP [dm3] 2R_9407902_SNP [dm6]	T	A	8.298e^-5	0.517	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15290807	2R_15290807_SNP [dm3] 2R_19403302_SNP [dm6]	A	T	8.316e^-5	0.517	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13103539	2L_13103539_SNP [dm3] 2L_13103539_SNP [dm6]	A	C	8.387e^-5	0.518	INTERGENIC
2L	12961924	2L_12961924_SNP [dm3] 2L_12961924_SNP [dm6]	A	C	8.401e^-5	0.518	INTERGENIC
3R	10604672	3R_10604672_SNP [dm3] 3R_14778950_SNP [dm6]	A	G	8.453e^-5	0.518	INTRON jvl
2R	17300904	2R_17300904_SNP [dm3] 2R_21413399_SNP [dm6]	T	A	8.550e^-5	0.518	INTRON Sdc
2L	12619164	2L_12619164_SNP [dm3] 2L_12619164_SNP [dm6]	A	G	8.573e^-5	0.518	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12619167	2L_12619167_SNP [dm3] 2L_12619167_SNP [dm6]	T	A	8.573e^-5	0.518	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12619177	2L_12619177_SNP [dm3] 2L_12619177_SNP [dm6]	C	A	8.573e^-5	0.518	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	2030504	3L_2030504_SNP [dm3] 3L_2030504_SNP [dm6]	G	C	8.658e^-5	0.518	INTERGENIC
2L	8876014	2L_8876014_SNP [dm3] 2L_8876014_SNP [dm6]	G	A	8.660e^-5	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	8316925	3L_8316925_SNP [dm3] 3L_8323825_SNP [dm6]	T	C	8.667e^-5	0.518	INTERGENIC
2L	12448914	2L_12448914_SNP [dm3] 2L_12448914_SNP [dm6]	C	T	8.686e^-5	0.518	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3L	8183480	3L_8183480_INS [dm3] 3L_8190380_INS [dm6]	G	GACGGCG	8.723e^-5	0.518	UTR_3_PRIME Atg18a UPSTREAM MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1674113	2R_1674113_INS [dm3] 2R_5786608_INS [dm6]	A	TAG	8.729e^-5	0.518	INTERGENIC
2R	15294571	2R_15294571_SNP [dm3] 2R_19407066_SNP [dm6]	T	G	8.780e^-5	0.518	UTR_3_PRIME hts INTRON hts
3L	12077139	3L_12077139_SNP [dm3] 3L_12084039_SNP [dm6]	C	T	8.801e^-5	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19580071	2L_19580071_SNP [dm3] 2L_19580071_SNP [dm6]	C	A	8.825e^-5	0.518	NON_SYNONYMOUS_CODING CG10268 DOWNSTREAM msb1l & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6983532	2L_6983532_SNP [dm3] 2L_6983532_SNP [dm6]	G	A	8.847e^-5	0.518	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9661538	2R_9661538_SNP [dm3] 2R_13774033_SNP [dm6]	C	G	8.859e^-5	0.518	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3R	17393951	3R_17393951_SNP [dm3] 3R_21568229_SNP [dm6]	A	G	8.863e^-5	0.518	SYNONYMOUS_CODING CG15498
3R	25789336	3R_25789336_SNP [dm3] 3R_29963614_SNP [dm6]	T	C	8.964e^-5	0.522	INTRON TkR99D
3R	9948570	3R_9948570_SNP [dm3] 3R_14122848_SNP [dm6]	C	A	9.040e^-5	0.523	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21335707	3L_21335707_SNP [dm3] 3L_21342607_SNP [dm6]	G	A	9.079e^-5	0.523	INTRON CG7324
2R	9660003	2R_9660003_DEL [dm3] 2R_13772498_DEL [dm6]	AA	A	9.115e^-5	0.523	INTRON Cpr50Ca
2R	11327403	2R_11327403_SNP [dm3] 2R_15439898_SNP [dm6]	C	G	9.157e^-5	0.523	INTRON CG43729
2L	12766990	2L_12766990_SNP [dm3] 2L_12766990_SNP [dm6]	G	A	9.189e^-5	0.523	INTERGENIC
3L	1853270	3L_1853270_SNP [dm3] 3L_1853270_SNP [dm6]	C	T	9.225e^-5	0.523	INTRON CG13936
3R	25043536	3R_25043536_SNP [dm3] 3R_29217814_SNP [dm6]	C	T	9.235e^-5	0.523	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18402277	2R_18402277_SNP [dm3] 2R_22514772_SNP [dm6]	A	G	9.238e^-5	0.523	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	23410108	3R_23410108_SNP [dm3] 3R_27584386_SNP [dm6]	G	A	9.241e^-5	0.523	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25043448	3R_25043448_SNP [dm3] 3R_29217726_SNP [dm6]	T	A	9.263e^-5	0.523	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	17576593	2L_17576593_SNP [dm3] 2L_17576593_SNP [dm6]	A	T	9.360e^-5	0.525	INTERGENIC
3L	3617303	3L_3617303_SNP [dm3] 3L_3617303_SNP [dm6]	A	C	9.393e^-5	0.525	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	2699812	2R_2699812_SNP [dm3] 2R_6812307_SNP [dm6]	C	T	9.427e^-5	0.525	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	9.430e^-5	0.525	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
2R	17623961	2R_17623961_SNP [dm3] 2R_21736456_SNP [dm6]	T	A	9.511e^-5	0.528	INTERGENIC
2L	12134586	2L_12134586_SNP [dm3] 2L_12134586_SNP [dm6]	G	C	9.538e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1887706	3L_1887706_SNP [dm3] 3L_1887706_SNP [dm6]	C	T	9.586e^-5	0.529	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	9.701e^-5	0.531	INTRON axo
2L	19326395	2L_19326395_SNP [dm3] 2L_19326395_SNP [dm6]	G	T	9.725e^-5	0.531	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7947267	3R_7947267_SNP [dm3] 3R_12121545_SNP [dm6]	C	A	9.731e^-5	0.531	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2L	19977895	2L_19977895_SNP [dm3] 2L_19977895_SNP [dm6]	G	A	9.739e^-5	0.531	UPSTREAM CR43620 INTRON CG43861
3R	410194	3R_410194_SNP [dm3] 3R_4584472_SNP [dm6]	A	T	9.776e^-5	0.531	DOWNSTREAM CR45558 INTERGENIC
3L	17022122	3L_17022122_SNP [dm3] 3L_17029022_SNP [dm6]	A	C	9.824e^-5	0.531	NON_SYNONYMOUS_CODING CG7730 DOWNSTREAM Ilp8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6606854	3L_6606854_SNP [dm3] 3L_6613754_SNP [dm6]	A	G	9.829e^-5	0.531	UTR_5_PRIME CG8398 INTRON CG8398
2R	5671458	2R_5671458_SNP [dm3] 2R_9783953_SNP [dm6]	G	A	9.881e^-5	0.532	INTRON CG1688
3R	15995889	3R_15995889_SNP [dm3] 3R_20170167_SNP [dm6]	A	G	9.916e^-5	0.532	INTRON CG5023
X	19055148	X_19055148_SNP [dm3] X_19161115_SNP [dm6]	A	T	9.934e^-5	0.532	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
2R	9740764	2R_9740764_SNP [dm3] 2R_13853259_SNP [dm6]	C	G	1.001e^-4	0.535	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
3L	19180226	3L_19180226_SNP [dm3] 3L_19187126_SNP [dm6]	G	T	1.010e^-4	0.538	INTRON fz2
2R	5295403	2R_5295403_SNP [dm3] 2R_9407898_SNP [dm6]	C	G	1.023e^-4	0.542	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	1.028e^-4	0.542	UPSTREAM CG12589 INTERGENIC
3L	11123198	3L_11123198_SNP [dm3] 3L_11130098_SNP [dm6]	T	C	1.042e^-4	0.542	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16563522	3L_16563522_SNP [dm3] 3L_16570422_SNP [dm6]	G	T	1.044e^-4	0.542	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12961931	X_12961931_SNP [dm3] X_13067898_SNP [dm6]	A	G	1.045e^-4	0.542	INTRON rad
X	12961946	X_12961946_SNP [dm3] X_13067913_SNP [dm6]	C	T	1.045e^-4	0.542	INTRON rad
3R	4965182	3R_4965182_SNP [dm3] 3R_9139460_SNP [dm6]	A	C	1.045e^-4	0.542	INTRON pum
3R	4965185	3R_4965185_SNP [dm3] 3R_9139463_SNP [dm6]	G	T	1.045e^-4	0.542	INTRON pum
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	1.045e^-4	0.542	INTRON Trpm
3L	10539063	3L_10539063_SNP [dm3] 3L_10545963_SNP [dm6]	G	A	1.047e^-4	0.542	INTRON A2bp1
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	1.059e^-4	0.542	INTRON CG34391
2L	2501981	2L_2501981_SNP [dm3] 2L_2501981_SNP [dm6]	T	A	1.060e^-4	0.542	INTERGENIC
3R	5591095	3R_5591095_SNP [dm3] 3R_9765373_SNP [dm6]	T	C	1.061e^-4	0.542	SYNONYMOUS_CODING CG8478 DOWNSTREAM MED6	TF binding site mE1_TFBS_sens
2L	6906763	2L_6906763_SNP [dm3] 2L_6906763_SNP [dm6]	G	A	1.061e^-4	0.542	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
3R	23410310	3R_23410310_SNP [dm3] 3R_27584588_SNP [dm6]	G	A	1.062e^-4	0.542	INTRON raps	TF binding site mE1_TFBS_chinmo
3L	4822361	3L_4822361_SNP [dm3] 3L_4822361_SNP [dm6]	G	A	1.070e^-4	0.545	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	396455	3L_396455_SNP [dm3] 3L_396455_SNP [dm6]	A	C	1.083e^-4	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6388238	X_6388238_SNP [dm3] X_6494205_SNP [dm6]	C	T	1.084e^-4	0.547	INTRON CG42340
3R	5317364	3R_5317364_SNP [dm3] 3R_9491642_SNP [dm6]	A	G	1.093e^-4	0.547	INTRON CG16779
3R	25043444	3R_25043444_SNP [dm3] 3R_29217722_SNP [dm6]	A	G	1.094e^-4	0.547	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9151251	2R_9151251_SNP [dm3] 2R_13263746_SNP [dm6]	C	A	1.100e^-4	0.547	INTRON CG42319
3L	22198784	3L_22198784_SNP [dm3] 3L_22205684_SNP [dm6]	A	G	1.101e^-4	0.547	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	366184	2L_366184_SNP [dm3] 2L_366184_SNP [dm6]	G	T	1.102e^-4	0.547	INTERGENIC
2L	367031	2L_367031_SNP [dm3] 2L_367031_SNP [dm6]	G	T	1.102e^-4	0.547	INTERGENIC
3L	5145007	3L_5145007_SNP [dm3] 3L_5151907_SNP [dm6]	A	G	1.102e^-4	0.547	NON_SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12619154	2L_12619154_SNP [dm3] 2L_12619154_SNP [dm6]	G	A	1.105e^-4	0.547	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11112660	3L_11112660_DEL [dm3] 3L_11119560_DEL [dm6]	GA	G	1.111e^-4	0.548	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12718350	3L_12718350_SNP [dm3] 3L_12725250_SNP [dm6]	A	G	1.121e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10224376	3L_10224376_DEL [dm3] 3L_10231276_DEL [dm6]	TG	T	1.122e^-4	0.548	INTERGENIC
2R	10624763	2R_10624763_SNP [dm3] 2R_14737258_SNP [dm6]	G	C	1.124e^-4	0.548	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12766868	2L_12766868_SNP [dm3] 2L_12766868_SNP [dm6]	T	C	1.128e^-4	0.548	INTERGENIC
3L	5000443	3L_5000443_SNP [dm3] 3L_5000443_SNP [dm6]	A	G	1.148e^-4	0.548	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6165045	3L_6165045_SNP [dm3] 3L_6171945_SNP [dm6]	T	A	1.155e^-4	0.548	INTRON CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2713502	X_2713502_SNP [dm3] X_2819469_SNP [dm6]	A	T	1.159e^-4	0.548	INTRON kirre
2L	9147765	2L_9147765_SNP [dm3] 2L_9147765_SNP [dm6]	C	T	1.167e^-4	0.548	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17862819	2R_17862819_SNP [dm3] 2R_21975314_SNP [dm6]	T	C	1.176e^-4	0.548	SYNONYMOUS_CODING CG9304
3L	3354483	3L_3354483_SNP [dm3] 3L_3354483_SNP [dm6]	T	C	1.183e^-4	0.548	INTRON kst	TF binding site mE1_TFBS_cad
2R	5155943	2R_5155943_SNP [dm3] 2R_9268438_SNP [dm6]	T	A	1.185e^-4	0.548	NON_SYNONYMOUS_CODING Pkn START_GAINED Pkn UTR_5_PRIME Pkn INTRON Pkn
3L	3846844	3L_3846844_SNP [dm3] 3L_3846844_SNP [dm6]	A	T	1.186e^-4	0.548	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	18369069	2R_18369069_SNP [dm3] 2R_22481564_SNP [dm6]	A	C	1.190e^-4	0.548	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25503067	3R_25503067_SNP [dm3] 3R_29677345_SNP [dm6]	G	A	1.192e^-4	0.548	SYNONYMOUS_CODING Cap-D2
3R	25503319	3R_25503319_SNP [dm3] 3R_29677597_SNP [dm6]	C	A	1.192e^-4	0.548	INTRON Cap-D2
3R	25503320	3R_25503320_SNP [dm3] 3R_29677598_SNP [dm6]	A	T	1.192e^-4	0.548	INTRON Cap-D2
3R	25503325	3R_25503325_INS [dm3] 3R_29677603_INS [dm6]	T	TT	1.192e^-4	0.548	INTRON Cap-D2
3R	25503350	3R_25503350_SNP [dm3] 3R_29677628_SNP [dm6]	G	A	1.192e^-4	0.548	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
3R	25503471	3R_25503471_SNP [dm3] 3R_29677749_SNP [dm6]	C	T	1.192e^-4	0.548	INTRON Cap-D2	TF binding site mE1_TFBS_cad
2L	7006792	2L_7006792_SNP [dm3] 2L_7006792_SNP [dm6]	C	T	1.196e^-4	0.548	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7006794	2L_7006794_SNP [dm3] 2L_7006794_SNP [dm6]	G	A	1.196e^-4	0.548	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7006805	2L_7006805_SNP [dm3] 2L_7006805_SNP [dm6]	A	G	1.196e^-4	0.548	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17684081	3L_17684081_SNP [dm3] 3L_17690981_SNP [dm6]	T	A	1.196e^-4	0.548	INTRON Ccn
3R	6629771	3R_6629771_SNP [dm3] 3R_10804049_SNP [dm6]	G	A	1.197e^-4	0.548	UPSTREAM CG14692 INTERGENIC
3L	7754929	3L_7754929_SNP [dm3] 3L_7761829_SNP [dm6]	G	A	1.202e^-4	0.548	SYNONYMOUS_CODING Hn START_GAINED Hn UTR_5_PRIME Hn
3L	2979709	3L_2979709_SNP [dm3] 3L_2979709_SNP [dm6]	A	C	1.203e^-4	0.548	INTERGENIC
3L	2500533	3L_2500533_SNP [dm3] 3L_2500533_SNP [dm6]	A	G	1.208e^-4	0.548	INTRON CG16758
3L	2500542	3L_2500542_SNP [dm3] 3L_2500542_SNP [dm6]	C	T	1.208e^-4	0.548	INTRON CG16758
2L	8875823	2L_8875823_SNP [dm3] 2L_8875823_SNP [dm6]	C	T	1.208e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	21335557	3L_21335557_SNP [dm3] 3L_21342457_SNP [dm6]	A	T	1.211e^-4	0.548	SPLICE_SITE_REGION CG7324 INTRON CG7324
3R	18403675	3R_18403675_SNP [dm3] 3R_22577953_SNP [dm6]	A	C	1.213e^-4	0.548	INTRON CG33110
3L	19194743	3L_19194743_INS [dm3] 3L_19201643_INS [dm6]	A	AT	1.215e^-4	0.548	INTRON fz2
3L	6535299	3L_6535299_SNP [dm3] 3L_6542199_SNP [dm6]	T	G	1.218e^-4	0.548	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	1354610	X_1354610_INS [dm3] X_1460577_INS [dm6]	T	TA	1.221e^-4	0.548	UTR_5_PRIME CG14786 DOWNSTREAM CG14787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	19326316	2L_19326316_SNP [dm3] 2L_19326316_SNP [dm6]	C	T	1.221e^-4	0.548	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13271278	3L_13271278_SNP [dm3] 3L_13278178_SNP [dm6]	T	G	1.225e^-4	0.548	UTR_3_PRIME caps	TF binding site mE1_TFBS_cad
3L	13271315	3L_13271315_SNP [dm3] 3L_13278215_SNP [dm6]	C	T	1.225e^-4	0.548	UTR_3_PRIME caps
2L	12157565	2L_12157565_SNP [dm3] 2L_12157565_SNP [dm6]	T	G	1.237e^-4	0.548	INTRON CG31760
3L	11429169	3L_11429169_SNP [dm3] 3L_11436069_SNP [dm6]	A	T	1.240e^-4	0.548	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18059760	2R_18059760_SNP [dm3] 2R_22172255_SNP [dm6]	A	G	1.242e^-4	0.548	SPLICE_SITE_REGION a DOWNSTREAM CG3045 INTRON a
3L	12129240	3L_12129240_SNP [dm3] 3L_12136140_SNP [dm6]	C	A	1.247e^-4	0.548	NON_SYNONYMOUS_CODING CG5645 UPSTREAM Atg12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12766730	2L_12766730_SNP [dm3] 2L_12766730_SNP [dm6]	G	C	1.249e^-4	0.548	INTERGENIC
3L	7836163	3L_7836163_SNP [dm3] 3L_7843063_SNP [dm6]	T	A	1.249e^-4	0.548	INTRON Pdp1	regulatory region REDfly_CRMs
3R	21448990	3R_21448990_SNP [dm3] 3R_25623268_SNP [dm6]	G	C	1.258e^-4	0.548	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
3L	8674095	3L_8674095_SNP [dm3] 3L_8680995_SNP [dm6]	C	T	1.260e^-4	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6840566	3L_6840566_SNP [dm3] 3L_6847466_SNP [dm6]	A	C	1.260e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12348915	3L_12348915_SNP [dm3] 3L_12355815_SNP [dm6]	C	T	1.262e^-4	0.548	INTERGENIC
3R	4099775	3R_4099775_SNP [dm3] 3R_8274053_SNP [dm6]	A	C	1.270e^-4	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	17215276	2R_17215276_SNP [dm3] 2R_21327771_SNP [dm6]	C	G	1.276e^-4	0.548	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Me28S-A2589b DOWNSTREAM snoRNA:Psi28S-3316a & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16962274	3L_16962274_SNP [dm3] 3L_16969174_SNP [dm6]	T	A	1.280e^-4	0.548	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962282	3L_16962282_SNP [dm3] 3L_16969182_SNP [dm6]	T	G	1.280e^-4	0.548	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	2858594	3L_2858594_DEL [dm3] 3L_2858594_DEL [dm6]	ATA	A	1.283e^-4	0.548	INTRON CG43444	insulator Insulator_Class_II.mE01
3L	3637407	3L_3637407_SNP [dm3] 3L_3637407_SNP [dm6]	C	T	1.284e^-4	0.548	INTRON dar1
2L	5245074	2L_5245074_SNP [dm3] 2L_5245074_SNP [dm6]	T	C	1.290e^-4	0.548	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
3L	4822315	3L_4822315_SNP [dm3] 3L_4822315_SNP [dm6]	A	G	1.290e^-4	0.548	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2501990	2L_2501990_SNP [dm3] 2L_2501990_SNP [dm6]	C	T	1.294e^-4	0.548	INTERGENIC
2L	2502024	2L_2502024_SNP [dm3] 2L_2502024_SNP [dm6]	C	A	1.294e^-4	0.548	INTERGENIC
2R	7793371	2R_7793371_SNP [dm3] 2R_11905866_SNP [dm6]	G	A	1.301e^-4	0.548	SYNONYMOUS_CODING CG13183
3R	970285	3R_970285_INS [dm3] 3R_5144563_INS [dm6]	G	TAGTTTGTATCCCCAGTTTG...	1.307e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2985343	3L_2985343_SNP [dm3] 3L_2985343_SNP [dm6]	G	T	1.315e^-4	0.548	INTERGENIC
2R	12278192	2R_12278192_SNP [dm3] 2R_16390687_SNP [dm6]	T	C	1.318e^-4	0.548	INTRON Sema-2b
2L	22322229	2L_22322229_SNP [dm3] 2L_22322229_SNP [dm6]	T	C	1.318e^-4	0.548	INTRON CG17018
2R	17253697	2R_17253697_SNP [dm3] 2R_21366192_SNP [dm6]	T	A	1.319e^-4	0.548	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	20504962	X_20504962_SNP [dm3] X_20633935_SNP [dm6]	G	C	1.321e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13272412	3L_13272412_SNP [dm3] 3L_13279312_SNP [dm6]	G	T	1.322e^-4	0.548	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
3R	6306780	3R_6306780_SNP [dm3] 3R_10481058_SNP [dm6]	C	T	1.323e^-4	0.548	INTERGENIC
2R	5687989	2R_5687989_SNP [dm3] 2R_9800484_SNP [dm6]	C	G	1.326e^-4	0.548	INTRON CG1688
2L	19980440	2L_19980440_INS [dm3] 2L_19980440_INS [dm6]	C	CATA	1.328e^-4	0.548	DOWNSTREAM CR43620 INTRON CG43861
3R	3628958	3R_3628958_SNP [dm3] 3R_7803236_SNP [dm6]	G	T	1.333e^-4	0.548	UPSTREAM CG3014 INTRON CG18268
2R	18872361	2R_18872361_SNP [dm3] 2R_22984838_SNP [dm6]	C	G	1.334e^-4	0.548	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2L	19188663	2L_19188663_SNP [dm3] 2L_19188663_SNP [dm6]	G	A	1.336e^-4	0.548	SYNONYMOUS_CODING pigeon
3L	2996384	3L_2996384_SNP [dm3] 3L_2996384_SNP [dm6]	G	A	1.344e^-4	0.548	DOWNSTREAM CG2113 INTERGENIC
2R	9661554	2R_9661554_SNP [dm3] 2R_13774049_SNP [dm6]	A	G	1.357e^-4	0.548	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	1.358e^-4	0.548	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21142944	3L_21142944_SNP [dm3] 3L_21149844_SNP [dm6]	G	A	1.359e^-4	0.548	INTRON Ac78C
2L	12134549	2L_12134549_SNP [dm3] 2L_12134549_SNP [dm6]	C	T	1.372e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1935143	2L_1935143_SNP [dm3] 2L_1935143_SNP [dm6]	G	C	1.374e^-4	0.548	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
3L	19034475	3L_19034475_SNP [dm3] 3L_19041375_SNP [dm6]	T	C	1.375e^-4	0.548	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17903812	2R_17903812_SNP [dm3] 2R_22016307_SNP [dm6]	A	G	1.376e^-4	0.548	INTRON CG34370
3R	17222535	3R_17222535_SNP [dm3] 3R_21396813_SNP [dm6]	G	A	1.376e^-4	0.548	DOWNSTREAM CG6475 INTERGENIC	regulatory region REDfly_CRMs
3R	10604676	3R_10604676_SNP [dm3] 3R_14778954_SNP [dm6]	A	T	1.380e^-4	0.548	INTRON jvl
3L	7632924	3L_7632924_SNP [dm3] 3L_7639824_SNP [dm6]	A	T	1.382e^-4	0.548	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3L	10654095	3L_10654095_DEL [dm3] 3L_10660995_DEL [dm6]	AA	A	1.389e^-4	0.548	UTR_5_PRIME CG32066 UPSTREAM CG8003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	20899187	X_20899187_SNP [dm3] X_21028160_SNP [dm6]	G	C	1.390e^-4	0.548	DOWNSTREAM CG1529 INTRON CG1532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2355431	3L_2355431_SNP [dm3] 3L_2355431_SNP [dm6]	T	G	1.390e^-4	0.548	INTERGENIC
3R	7958800	3R_7958800_SNP [dm3] 3R_12133078_SNP [dm6]	A	T	1.391e^-4	0.548	INTERGENIC
2R	5295456	2R_5295456_SNP [dm3] 2R_9407951_SNP [dm6]	G	T	1.392e^-4	0.548	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14545808	2R_14545808_SNP [dm3] 2R_18658303_SNP [dm6]	G	A	1.397e^-4	0.548	UPSTREAM SP2637 DOWNSTREAM Gint3 & 1 other INTERGENIC
2L	12771324	2L_12771324_SNP [dm3] 2L_12771324_SNP [dm6]	C	T	1.407e^-4	0.548	INTERGENIC
2R	16601454	2R_16601454_SNP [dm3] 2R_20713949_SNP [dm6]	G	A	1.407e^-4	0.548	INTRON dpr
X	5242354	X_5242354_SNP [dm3] X_5348321_SNP [dm6]	G	A	1.421e^-4	0.548	INTRON SK
3R	928573	3R_928573_SNP [dm3] 3R_5102851_SNP [dm6]	C	A	1.421e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12681627	2L_12681627_SNP [dm3] 2L_12681627_SNP [dm6]	T	A	1.428e^-4	0.548	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	2500414	3L_2500414_SNP [dm3] 3L_2500414_SNP [dm6]	C	G	1.436e^-4	0.548	SYNONYMOUS_CODING CG16758	TF binding site mE1_TFBS_chinmo
X	4683254	X_4683254_SNP [dm3] X_4789221_SNP [dm6]	G	A	1.436e^-4	0.548	INTERGENIC
3L	4025626	3L_4025626_SNP [dm3] 3L_4025626_SNP [dm6]	C	T	1.438e^-4	0.548	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
X	20323322	X_20323322_SNP [dm3] X_20452295_SNP [dm6]	C	A	1.440e^-4	0.548	INTRON CG32506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15842695	2R_15842695_SNP [dm3] 2R_19955190_SNP [dm6]	A	C	1.444e^-4	0.548	DOWNSTREAM CG44622 INTERGENIC
3R	5697996	3R_5697996_SNP [dm3] 3R_9872274_SNP [dm6]	A	T	1.444e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	19977977	2L_19977977_SNP [dm3] 2L_19977977_SNP [dm6]	T	C	1.446e^-4	0.548	UPSTREAM CR43620 INTRON CG43861
3L	7271654	3L_7271654_SNP [dm3] 3L_7278554_SNP [dm6]	T	A	1.447e^-4	0.548	INTRON unc-13-4A
X	3257987	X_3257987_SNP [dm3] X_3363954_SNP [dm6]	A	G	1.453e^-4	0.548	INTERGENIC
2R	17300840	2R_17300840_SNP [dm3] 2R_21413335_SNP [dm6]	G	T	1.454e^-4	0.548	INTRON Sdc
3L	21326604	3L_21326604_SNP [dm3] 3L_21333504_SNP [dm6]	C	T	1.456e^-4	0.548	INTRON Rab26
3L	3980028	3L_3980028_SNP [dm3] 3L_3980028_SNP [dm6]	C	T	1.459e^-4	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6388460	X_6388460_SNP [dm3] X_6494427_SNP [dm6]	G	A	1.459e^-4	0.548	INTRON CG42340
3L	18919722	3L_18919722_SNP [dm3] 3L_18926622_SNP [dm6]	A	T	1.461e^-4	0.548	DOWNSTREAM CG43049 INTRON CG32204
3L	3990203	3L_3990203_SNP [dm3] 3L_3990203_SNP [dm6]	C	T	1.466e^-4	0.548	UTR_3_PRIME scrt
X	3462662	X_3462662_INS [dm3] X_3568629_INS [dm6]	A	ACA	1.476e^-4	0.548	UTR_5_PRIME CG32791 UPSTREAM ppk8 INTRON ppk8
3R	19169700	3R_19169700_SNP [dm3] 3R_23343978_SNP [dm6]	C	T	1.477e^-4	0.548	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19169703	3R_19169703_SNP [dm3] 3R_23343981_SNP [dm6]	A	C	1.477e^-4	0.548	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15183577	2R_15183577_SNP [dm3] 2R_19296072_SNP [dm6]	G	C	1.478e^-4	0.548	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12176759	3L_12176759_DEL [dm3] 3L_12183659_DEL [dm6]	TT	T	1.479e^-4	0.548	DOWNSTREAM CAH2 INTERGENIC
3L	10242240	3L_10242240_SNP [dm3] 3L_10249140_SNP [dm6]	T	C	1.480e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3R	26494968	3R_26494968_SNP [dm3] 3R_30669246_SNP [dm6]	G	A	1.482e^-4	0.548	INTERGENIC
3L	16563257	3L_16563257_SNP [dm3] 3L_16570157_SNP [dm6]	C	A	1.483e^-4	0.548	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7952677	3L_7952677_SNP [dm3] 3L_7959577_SNP [dm6]	A	T	1.486e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	1.492e^-4	0.548	UPSTREAM CG14247 INTERGENIC
2R	19022313	2R_19022313_SNP [dm3] 2R_23134790_SNP [dm6]	G	T	1.493e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10538856	3L_10538856_SNP [dm3] 3L_10545756_SNP [dm6]	T	A	1.509e^-4	0.548	INTRON A2bp1
2R	13996780	2R_13996780_SNP [dm3] 2R_18109275_SNP [dm6]	A	T	1.515e^-4	0.548	UPSTREAM CG5756 & 1 other INTERGENIC
3L	11107637	3L_11107637_SNP [dm3] 3L_11114537_SNP [dm6]	T	C	1.515e^-4	0.548	UTR_3_PRIME fd68A UPSTREAM Sod
2R	6532994	2R_6532994_SNP [dm3] 2R_10645489_SNP [dm6]	G	T	1.516e^-4	0.548	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	11650529	3L_11650529_SNP [dm3] 3L_11657429_SNP [dm6]	G	A	1.523e^-4	0.548	DOWNSTREAM mir-274 INTRON CG32085
3L	12174978	3L_12174978_SNP [dm3] 3L_12181878_SNP [dm6]	T	C	1.530e^-4	0.548	SYNONYMOUS_CODING CAH2
2L	19818310	2L_19818310_INS [dm3] 2L_19818310_INS [dm6]	T	TAT	1.538e^-4	0.548	INTRON sick	transposable element FlyBase
3L	8673546	3L_8673546_SNP [dm3] 3L_8680446_SNP [dm6]	G	A	1.541e^-4	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	11124627	3L_11124627_SNP [dm3] 3L_11131527_SNP [dm6]	T	G	1.551e^-4	0.548	DOWNSTREAM CG32074 & 1 other INTRON CG42575
2R	18001532	2R_18001532_SNP [dm3] 2R_22114027_SNP [dm6]	T	C	1.557e^-4	0.548	SYNONYMOUS_CODING CG30280 UPSTREAM CG30281 INTRON Vrp1
3R	21449047	3R_21449047_SNP [dm3] 3R_25623325_SNP [dm6]	G	A	1.561e^-4	0.548	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
2L	9148839	2L_9148839_SNP [dm3] 2L_9148839_SNP [dm6]	C	T	1.567e^-4	0.548	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13294528	3L_13294528_SNP [dm3] 3L_13301428_SNP [dm6]	A	C	1.570e^-4	0.548	UPSTREAM SP & 1 other INTERGENIC
2R	12542676	2R_12542676_SNP [dm3] 2R_16655171_SNP [dm6]	G	A	1.576e^-4	0.548	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
3L	12124625	3L_12124625_SNP [dm3] 3L_12131525_SNP [dm6]	C	T	1.577e^-4	0.548	UTR_3_PRIME Lsp2 UPSTREAM CG11534	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	12124996	3L_12124996_SNP [dm3] 3L_12131896_SNP [dm6]	A	C	1.577e^-4	0.548	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12125098	3L_12125098_SNP [dm3] 3L_12131998_SNP [dm6]	A	T	1.577e^-4	0.548	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12126432	3L_12126432_SNP [dm3] 3L_12133332_SNP [dm6]	A	G	1.577e^-4	0.548	NON_SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12127239	3L_12127239_SNP [dm3] 3L_12134139_SNP [dm6]	A	C	1.577e^-4	0.548	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
3L	12133187	3L_12133187_SNP [dm3] 3L_12140087_SNP [dm6]	C	T	1.577e^-4	0.548	UTR_5_PRIME RhoGAP68F
3L	12133385	3L_12133385_SNP [dm3] 3L_12140285_SNP [dm6]	A	T	1.577e^-4	0.548	INTRON RhoGAP68F
3L	12133451	3L_12133451_SNP [dm3] 3L_12140351_SNP [dm6]	T	A	1.577e^-4	0.548	INTRON RhoGAP68F
2R	12607776	2R_12607776_SNP [dm3] 2R_16720271_SNP [dm6]	A	T	1.580e^-4	0.548	INTRON CG30463
2R	13350050	2R_13350050_INS [dm3] 2R_17462545_INS [dm6]	A	AA	1.586e^-4	0.548	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11120080	3L_11120080_SNP [dm3] 3L_11126980_SNP [dm6]	T	A	1.588e^-4	0.548	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	14822454	3R_14822454_SNP [dm3] 3R_18996732_SNP [dm6]	T	C	1.595e^-4	0.548	INTRON gukh	TF binding site mE1_TFBS_cad
2L	7009378	2L_7009378_SNP [dm3] 2L_7009378_SNP [dm6]	A	T	1.596e^-4	0.548	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25798562	3R_25798562_SNP [dm3] 3R_29972840_SNP [dm6]	A	T	1.598e^-4	0.548	INTERGENIC
3R	2182064	3R_2182064_INS [dm3] 3R_6356342_INS [dm6]	T	TA	1.602e^-4	0.548	INTRON Pak
X	12633035	X_12633035_SNP [dm3] X_12739002_SNP [dm6]	T	C	1.607e^-4	0.548	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17772569	3R_17772569_SNP [dm3] 3R_21946847_SNP [dm6]	T	G	1.607e^-4	0.548	INTERGENIC
2L	19987174	2L_19987174_SNP [dm3] 2L_19987174_SNP [dm6]	C	T	1.610e^-4	0.548	INTRON CG43861
3L	2981746	3L_2981746_SNP [dm3] 3L_2981746_SNP [dm6]	G	A	1.618e^-4	0.548	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5145020	3L_5145020_SNP [dm3] 3L_5151920_SNP [dm6]	G	T	1.624e^-4	0.548	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16745263	3L_16745263_SNP [dm3] 3L_16752163_SNP [dm6]	G	A	1.624e^-4	0.548	INTERGENIC
3R	16082880	3R_16082880_DEL [dm3] 3R_20257158_DEL [dm6]	GAATCGAC	G	1.624e^-4	0.548	INTRON cic	TF binding site BDTNP1_TFBS_dl
2L	19997717	2L_19997717_SNP [dm3] 2L_19997717_SNP [dm6]	T	G	1.630e^-4	0.548	INTRON CG43861
3R	9946566	3R_9946566_SNP [dm3] 3R_14120844_SNP [dm6]	C	T	1.636e^-4	0.548	SPLICE_SITE_REGION Abi INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15573301	3L_15573301_SNP [dm3] 3L_15580201_SNP [dm6]	G	A	1.637e^-4	0.548	UPSTREAM CG12301 INTRON mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16394488	2L_16394488_SNP [dm3] 2L_16394488_SNP [dm6]	A	G	1.638e^-4	0.548	INTERGENIC
2L	12771147	2L_12771147_SNP [dm3] 2L_12771147_SNP [dm6]	T	G	1.642e^-4	0.548	INTERGENIC
2L	12771173	2L_12771173_SNP [dm3] 2L_12771173_SNP [dm6]	T	C	1.642e^-4	0.548	INTERGENIC
2L	12771328	2L_12771328_SNP [dm3] 2L_12771328_SNP [dm6]	A	C	1.642e^-4	0.548	INTERGENIC
2L	12771333	2L_12771333_INS [dm3] 2L_12771333_INS [dm6]	C	CAGAAACCTTATC...	1.642e^-4	0.548	INTERGENIC
3L	7835993	3L_7835993_SNP [dm3] 3L_7842893_SNP [dm6]	A	T	1.646e^-4	0.548	INTRON Pdp1	regulatory region REDfly_CRMs
2L	11799612	2L_11799612_SNP [dm3] 2L_11799612_SNP [dm6]	C	T	1.654e^-4	0.548	INTRON crol	TF binding site mE1_TFBS_cad
3R	14851471	3R_14851471_SNP [dm3] 3R_19025749_SNP [dm6]	G	C	1.661e^-4	0.548	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
2L	12619143	2L_12619143_SNP [dm3] 2L_12619143_SNP [dm6]	A	G	1.669e^-4	0.548	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	22198817	3L_22198817_SNP [dm3] 3L_22205717_SNP [dm6]	C	T	1.671e^-4	0.548	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	368131	2L_368131_SNP [dm3] 2L_368131_SNP [dm6]	T	A	1.673e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15996174	3R_15996174_SNP [dm3] 3R_20170452_SNP [dm6]	C	G	1.675e^-4	0.548	INTRON CG5023
3L	2009592	3L_2009592_SNP [dm3] 3L_2009592_SNP [dm6]	A	G	1.689e^-4	0.548	DOWNSTREAM CR44535 EXON CR44535
3L	2009690	3L_2009690_SNP [dm3] 3L_2009690_SNP [dm6]	C	T	1.689e^-4	0.548	DOWNSTREAM CR44535 EXON CR44535
3L	2013745	3L_2013745_SNP [dm3] 3L_2013745_SNP [dm6]	G	A	1.689e^-4	0.548	INTERGENIC
2L	19326341	2L_19326341_SNP [dm3] 2L_19326341_SNP [dm6]	G	C	1.690e^-4	0.548	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326353	2L_19326353_SNP [dm3] 2L_19326353_SNP [dm6]	G	A	1.690e^-4	0.548	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326378	2L_19326378_SNP [dm3] 2L_19326378_SNP [dm6]	T	C	1.690e^-4	0.548	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326380	2L_19326380_SNP [dm3] 2L_19326380_SNP [dm6]	G	A	1.690e^-4	0.548	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326390	2L_19326390_SNP [dm3] 2L_19326390_SNP [dm6]	G	A	1.690e^-4	0.548	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	1.693e^-4	0.548	INTRON Ccn
2R	16392366	2R_16392366_SNP [dm3] 2R_20504861_SNP [dm6]	C	A	1.695e^-4	0.548	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 1 other	regulatory region REDfly_CRMs
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	1.696e^-4	0.548	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
3L	7386381	3L_7386381_SNP [dm3] 3L_7393281_SNP [dm6]	A	G	1.698e^-4	0.548	INTRON CG8563
3L	11520520	3L_11520520_SNP [dm3] 3L_11527420_SNP [dm6]	G	T	1.700e^-4	0.548	INTRON Mob2	TF binding site mE1_TFBS_HSA
2R	17300865	2R_17300865_SNP [dm3] 2R_21413360_SNP [dm6]	T	G	1.705e^-4	0.548	INTRON Sdc
3R	8400796	3R_8400796_SNP [dm3] 3R_12575074_SNP [dm6]	A	G	1.709e^-4	0.548	INTRON Octbeta2R
2R	17253738	2R_17253738_SNP [dm3] 2R_21366233_SNP [dm6]	G	A	1.710e^-4	0.548	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16757291	2R_16757291_SNP [dm3] 2R_20869786_SNP [dm6]	G	C	1.716e^-4	0.548	UPSTREAM IM4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11155516	2R_11155516_SNP [dm3] 2R_15268011_SNP [dm6]	G	A	1.719e^-4	0.548	INTRON Trpm
3R	8379083	3R_8379083_SNP [dm3] 3R_12553361_SNP [dm6]	G	C	1.728e^-4	0.548	INTRON Octbeta2R
X	5827053	X_5827053_DEL [dm3] X_5933020_DEL [dm6]	AACAAAAA	A	1.743e^-4	0.548	INTRON CG3726
2L	12134508	2L_12134508_SNP [dm3] 2L_12134508_SNP [dm6]	A	T	1.759e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134509	2L_12134509_SNP [dm3] 2L_12134509_SNP [dm6]	C	T	1.759e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14945447	2R_14945447_SNP [dm3] 2R_19057942_SNP [dm6]	C	T	1.760e^-4	0.548	INTERGENIC
2R	9663518	2R_9663518_SNP [dm3] 2R_13776013_SNP [dm6]	C	T	1.764e^-4	0.548	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4192801	2L_4192801_SNP [dm3] 2L_4192801_SNP [dm6]	G	A	1.767e^-4	0.548	NON_SYNONYMOUS_CODING CG3714 INTRON CG3714
2L	19818318	2L_19818318_SNP [dm3] 2L_19818318_SNP [dm6]	A	G	1.767e^-4	0.548	INTRON sick	transposable element FlyBase
2R	5687782	2R_5687782_SNP [dm3] 2R_9800277_SNP [dm6]	T	C	1.767e^-4	0.548	INTRON CG1688
2L	19202066	2L_19202066_SNP [dm3] 2L_19202066_SNP [dm6]	A	T	1.780e^-4	0.548	INTRON drl	regulatory region REDfly_CRMs
3L	7633869	3L_7633869_SNP [dm3] 3L_7640769_SNP [dm6]	A	T	1.782e^-4	0.548	UPSTREAM CG33276 DOWNSTREAM snoRNA:Me18S-A1806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10326892	2R_10326892_SNP [dm3] 2R_14439387_SNP [dm6]	A	C	1.785e^-4	0.548	INTRON Oaz
3L	6039389	3L_6039389_SNP [dm3] 3L_6046289_SNP [dm6]	C	T	1.801e^-4	0.548	INTERGENIC
3R	17033987	3R_17033987_SNP [dm3] 3R_21208265_SNP [dm6]	T	C	1.812e^-4	0.548	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	16238810	3R_16238810_SNP [dm3] 3R_20413088_SNP [dm6]	A	C	1.817e^-4	0.548	INTRON Gfrl
3L	17683801	3L_17683801_SNP [dm3] 3L_17690701_SNP [dm6]	A	C	1.823e^-4	0.548	INTRON Ccn
3L	11123193	3L_11123193_SNP [dm3] 3L_11130093_SNP [dm6]	T	C	1.826e^-4	0.548	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21314925	3L_21314925_SNP [dm3] 3L_21321825_SNP [dm6]	C	G	1.828e^-4	0.548	UPSTREAM Rab26 INTRON Rab26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5697963	3R_5697963_SNP [dm3] 3R_9872241_SNP [dm6]	T	A	1.838e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10604659	3R_10604659_SNP [dm3] 3R_14778937_SNP [dm6]	C	T	1.839e^-4	0.548	INTRON jvl
3R	10604662	3R_10604662_SNP [dm3] 3R_14778940_SNP [dm6]	A	T	1.839e^-4	0.548	INTRON jvl
2L	4009454	2L_4009454_SNP [dm3] 2L_4009454_SNP [dm6]	T	A	1.847e^-4	0.548	DOWNSTREAM CG43774 INTERGENIC
3R	10603217	3R_10603217_SNP [dm3] 3R_14777495_SNP [dm6]	A	G	1.847e^-4	0.548	INTRON jvl
3L	7785127	3L_7785127_SNP [dm3] 3L_7792027_SNP [dm6]	G	A	1.847e^-4	0.548	INTRON CG32369
3R	10378687	3R_10378687_SNP [dm3] 3R_14552965_SNP [dm6]	T	C	1.848e^-4	0.548	INTRON Pde6
2R	9337481	2R_9337481_SNP [dm3] 2R_13449976_SNP [dm6]	T	C	1.855e^-4	0.548	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22167885	3L_22167885_SNP [dm3] 3L_22174785_SNP [dm6]	G	A	1.867e^-4	0.548	INTRON olf413	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	5688696	2R_5688696_SNP [dm3] 2R_9801191_SNP [dm6]	T	A	1.868e^-4	0.548	INTRON CG1688
2R	9658669	2R_9658669_SNP [dm3] 2R_13771164_SNP [dm6]	G	T	1.881e^-4	0.548	INTRON Cpr50Ca
2R	16393274	2R_16393274_SNP [dm3] 2R_20505769_SNP [dm6]	C	A	1.881e^-4	0.548	UPSTREAM CR44645 DOWNSTREAM Obp57b & 2 others INTERGENIC
X	14566052	X_14566052_SNP [dm3] X_14672019_SNP [dm6]	A	G	1.882e^-4	0.548	INTERGENIC
X	14566088	X_14566088_SNP [dm3] X_14672055_SNP [dm6]	T	A	1.882e^-4	0.548	INTERGENIC
X	14566093	X_14566093_SNP [dm3] X_14672060_SNP [dm6]	A	T	1.882e^-4	0.548	INTERGENIC
X	14566095	X_14566095_SNP [dm3] X_14672062_SNP [dm6]	C	T	1.882e^-4	0.548	INTERGENIC
3L	12133251	3L_12133251_SNP [dm3] 3L_12140151_SNP [dm6]	C	T	1.882e^-4	0.548	INTRON RhoGAP68F
2L	3502363	2L_3502363_SNP [dm3] 2L_3502363_SNP [dm6]	A	C	1.883e^-4	0.548	INTRON tim
3L	3846842	3L_3846842_SNP [dm3] 3L_3846842_SNP [dm6]	T	A	1.887e^-4	0.548	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	7108988	3L_7108988_INS [dm3] 3L_7115888_INS [dm6]	G	GGG	1.888e^-4	0.548	INTRON form3
X	2713524	X_2713524_SNP [dm3] X_2819491_SNP [dm6]	A	T	1.888e^-4	0.548	INTRON kirre
3R	15453806	3R_15453806_SNP [dm3] 3R_19628084_SNP [dm6]	A	G	1.893e^-4	0.548	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3L	8628847	3L_8628847_SNP [dm3] 3L_8635747_SNP [dm6]	T	G	1.894e^-4	0.548	SYNONYMOUS_CODING Zasp66 INTRON Zasp66
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	1.896e^-4	0.548	INTRON Indy
2L	8875691	2L_8875691_INS [dm3] 2L_8875691_INS [dm6]	A	AGA	1.897e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27344561	3R_27344561_SNP [dm3] 3R_31518839_SNP [dm6]	T	A	1.899e^-4	0.548	INTERGENIC
3R	27344564	3R_27344564_SNP [dm3] 3R_31518842_SNP [dm6]	T	G	1.899e^-4	0.548	INTERGENIC
3R	4296467	3R_4296467_SNP [dm3] 3R_8470745_SNP [dm6]	G	A	1.900e^-4	0.548	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
3L	7403844	3L_7403844_SNP [dm3] 3L_7410744_SNP [dm6]	T	G	1.901e^-4	0.548	INTERGENIC
3L	15546653	3L_15546653_SNP [dm3] 3L_15553553_SNP [dm6]	A	C	1.901e^-4	0.548	UPSTREAM AGO2 DOWNSTREAM CrebA INTERGENIC	transposable element FlyBase
3L	6553177	3L_6553177_INS [dm3] 3L_6560077_INS [dm6]	A	AAA	1.905e^-4	0.548	INTRON CG18769
2R	4096673	2R_4096673_SNP [dm3] 2R_8209168_SNP [dm6]	T	C	1.910e^-4	0.548	INTRON LRP1	TF binding site mE1_TFBS_cad
3L	21277736	3L_21277736_SNP [dm3] 3L_21284636_SNP [dm6]	T	C	1.911e^-4	0.548	INTRON CG12974	TF binding site BDTNP1_TFBS_dl
2R	12542618	2R_12542618_SNP [dm3] 2R_16655113_SNP [dm6]	G	T	1.913e^-4	0.548	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
2L	19979815	2L_19979815_SNP [dm3] 2L_19979815_SNP [dm6]	T	G	1.917e^-4	0.548	DOWNSTREAM CR43620 INTRON CG43861
3R	5480330	3R_5480330_SNP [dm3] 3R_9654608_SNP [dm6]	G	C	1.920e^-4	0.548	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
3L	18070128	3L_18070128_SNP [dm3] 3L_18077028_SNP [dm6]	A	G	1.921e^-4	0.548	UPSTREAM CR45392 INTERGENIC
2L	6081979	2L_6081979_SNP [dm3] 2L_6081979_SNP [dm6]	C	T	1.926e^-4	0.548	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3369219	3L_3369219_SNP [dm3] 3L_3369219_SNP [dm6]	T	A	1.929e^-4	0.548	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369235	3L_3369235_SNP [dm3] 3L_3369235_SNP [dm6]	T	G	1.929e^-4	0.548	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369323	3L_3369323_SNP [dm3] 3L_3369323_SNP [dm6]	G	A	1.929e^-4	0.548	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369326	3L_3369326_SNP [dm3] 3L_3369326_SNP [dm6]	C	G	1.929e^-4	0.548	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
X	6007635	X_6007635_SNP [dm3] X_6113602_SNP [dm6]	G	A	1.932e^-4	0.548	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2732017	2L_2732017_SNP [dm3] 2L_2732017_SNP [dm6]	A	G	1.937e^-4	0.548	INTRON CG31689
3L	14675051	3L_14675051_SNP [dm3] 3L_14681951_SNP [dm6]	C	T	1.940e^-4	0.548	INTRON ome
X	2995121	X_2995121_SNP [dm3] X_3101088_SNP [dm6]	A	G	1.951e^-4	0.548	INTRON kirre
3L	3587321	3L_3587321_SNP [dm3] 3L_3587321_SNP [dm6]	C	G	1.951e^-4	0.548	INTRON Eip63E
3L	11120002	3L_11120002_SNP [dm3] 3L_11126902_SNP [dm6]	C	G	1.955e^-4	0.548	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11120016	3L_11120016_SNP [dm3] 3L_11126916_SNP [dm6]	G	A	1.955e^-4	0.548	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11120078	3L_11120078_SNP [dm3] 3L_11126978_SNP [dm6]	C	G	1.955e^-4	0.548	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3239931	X_3239931_SNP [dm3] X_3345898_SNP [dm6]	C	T	1.959e^-4	0.548	INTRON CR44886	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8113749	X_8113749_SNP [dm3] X_8219716_SNP [dm6]	T	A	1.959e^-4	0.548	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	10411627	3R_10411627_SNP [dm3] 3R_14585905_SNP [dm6]	G	T	1.964e^-4	0.548	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10604667	3R_10604667_SNP [dm3] 3R_14778945_SNP [dm6]	T	A	1.965e^-4	0.548	INTRON jvl
3R	26295509	3R_26295509_SNP [dm3] 3R_30469787_SNP [dm6]	C	T	1.965e^-4	0.548	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	1.969e^-4	0.548	INTRON Indy
2L	12961774	2L_12961774_INS [dm3] 2L_12961774_INS [dm6]	A	AA	1.971e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3810456	X_3810456_SNP [dm3] X_3916423_SNP [dm6]	C	A	1.990e^-4	0.548	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4822102	3L_4822102_SNP [dm3] 3L_4822102_SNP [dm6]	G	A	1.990e^-4	0.548	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad
3L	4822481	3L_4822481_SNP [dm3] 3L_4822481_SNP [dm6]	C	T	1.990e^-4	0.548	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4822829	3L_4822829_SNP [dm3] 3L_4822829_SNP [dm6]	A	G	1.990e^-4	0.548	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18789906	3L_18789906_SNP [dm3] 3L_18796806_SNP [dm6]	G	A	1.993e^-4	0.548	INTRON ftz-f1
2L	19326513	2L_19326513_SNP [dm3] 2L_19326513_SNP [dm6]	T	C	1.994e^-4	0.548	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	27348403	3R_27348403_SNP [dm3] 3R_31522681_SNP [dm6]	A	T	1.999e^-4	0.548	EXON CR45573
3R	2248695	3R_2248695_SNP [dm3] 3R_6422973_SNP [dm6]	T	A	2.007e^-4	0.548	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	2248710	3R_2248710_SNP [dm3] 3R_6422988_SNP [dm6]	G	C	2.007e^-4	0.548	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	2248807	3R_2248807_SNP [dm3] 3R_6423085_SNP [dm6]	G	T	2.007e^-4	0.548	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	2.009e^-4	0.548	INTRON axo
3L	6535462	3L_6535462_SNP [dm3] 3L_6542362_SNP [dm6]	G	T	2.010e^-4	0.548	INTRON sfl
3L	10242103	3L_10242103_SNP [dm3] 3L_10249003_SNP [dm6]	T	A	2.012e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3L	10242166	3L_10242166_SNP [dm3] 3L_10249066_SNP [dm6]	A	G	2.012e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3L	10242187	3L_10242187_SNP [dm3] 3L_10249087_SNP [dm6]	C	A	2.012e^-4	0.548	UPSTREAM CR44540 INTERGENIC
2R	8563519	2R_8563519_SNP [dm3] 2R_12676014_SNP [dm6]	T	G	2.012e^-4	0.548	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3R	885248	3R_885248_SNP [dm3] 3R_5059526_SNP [dm6]	C	A	2.017e^-4	0.548	INTERGENIC
2L	11799557	2L_11799557_SNP [dm3] 2L_11799557_SNP [dm6]	T	A	2.023e^-4	0.548	INTRON crol	TF binding site mE1_TFBS_cad
3R	6805262	3R_6805262_SNP [dm3] 3R_10979540_SNP [dm6]	T	G	2.024e^-4	0.548	INTRON CG34114
3L	8752919	3L_8752919_SNP [dm3] 3L_8759819_SNP [dm6]	C	A	2.027e^-4	0.548	NON_SYNONYMOUS_CODING Fhos
3L	17636940	3L_17636940_SNP [dm3] 3L_17643840_SNP [dm6]	T	A	2.031e^-4	0.548	INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	18895797	X_18895797_SNP [dm3] X_19001764_SNP [dm6]	C	T	2.033e^-4	0.548	INTRON CG43759
3L	5611591	3L_5611591_SNP [dm3] 3L_5618491_SNP [dm6]	T	A	2.034e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3011965	2L_3011965_SNP [dm3] 2L_3011965_SNP [dm6]	G	A	2.042e^-4	0.548	INTRON CG17265	TF binding site mE1_TFBS_inv
3L	5979536	3L_5979536_SNP [dm3] 3L_5986436_SNP [dm6]	G	A	2.042e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15159530	X_15159530_DEL [dm3] X_15265497_DEL [dm6]	CC	C	2.043e^-4	0.548	INTERGENIC
3L	6468911	3L_6468911_SNP [dm3] 3L_6475811_SNP [dm6]	A	T	2.047e^-4	0.548	INTRON CG42747
3L	6468916	3L_6468916_SNP [dm3] 3L_6475816_SNP [dm6]	G	A	2.047e^-4	0.548	INTRON CG42747
3L	18310270	3L_18310270_SNP [dm3] 3L_18317170_SNP [dm6]	G	A	2.049e^-4	0.548	INTERGENIC
X	18466980	X_18466980_SNP [dm3] X_18572947_SNP [dm6]	C	A	2.054e^-4	0.548	DOWNSTREAM Bx INTERGENIC
3R	25570944	3R_25570944_SNP [dm3] 3R_29745222_SNP [dm6]	G	T	2.061e^-4	0.548	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23157711	3R_23157711_SNP [dm3] 3R_27331989_SNP [dm6]	T	C	2.066e^-4	0.548	INTERGENIC
3R	8372434	3R_8372434_SNP [dm3] 3R_12546712_SNP [dm6]	A	T	2.066e^-4	0.548	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17643363	3L_17643363_SNP [dm3] 3L_17650263_SNP [dm6]	G	A	2.067e^-4	0.548	SYNONYMOUS_CODING Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12633691	X_12633691_DEL [dm3] X_12739658_DEL [dm6]	TT	T	2.073e^-4	0.548	INTRON Smr	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17903954	2R_17903954_SNP [dm3] 2R_22016449_SNP [dm6]	G	A	2.074e^-4	0.548	INTRON CG34370
3L	7085795	3L_7085795_SNP [dm3] 3L_7092695_SNP [dm6]	A	G	2.078e^-4	0.548	UPSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_inv
3L	3630320	3L_3630320_SNP [dm3] 3L_3630320_SNP [dm6]	T	C	2.082e^-4	0.548	INTRON dar1
3L	2568748	3L_2568748_INS [dm3] 3L_2568748_INS [dm6]	A	AA	2.084e^-4	0.548	INTRON msn
3R	20837171	3R_20837171_SNP [dm3] 3R_25011449_SNP [dm6]	C	G	2.100e^-4	0.548	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9337480	2R_9337480_SNP [dm3] 2R_13449975_SNP [dm6]	A	G	2.101e^-4	0.548	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1900079	3L_1900079_DEL [dm3] 3L_1900079_DEL [dm6]	CCCCATT	C	2.111e^-4	0.548	DOWNSTREAM CG1887 INTRON CG1887
3L	1900089	3L_1900089_SNP [dm3] 3L_1900089_SNP [dm6]	A	T	2.111e^-4	0.548	DOWNSTREAM CG1887 INTRON CG1887
3L	1900106	3L_1900106_DEL [dm3] 3L_1900106_DEL [dm6]	GGA	G	2.111e^-4	0.548	DOWNSTREAM CG1887 INTRON CG1887
2R	8944185	2R_8944185_SNP [dm3] 2R_13056680_SNP [dm6]	G	A	2.115e^-4	0.548	UTR_3_PRIME Drl-2
2R	9656866	2R_9656866_SNP [dm3] 2R_13769361_SNP [dm6]	A	G	2.117e^-4	0.548	UPSTREAM Cpr50Ca INTERGENIC
2L	12768561	2L_12768561_SNP [dm3] 2L_12768561_SNP [dm6]	C	A	2.117e^-4	0.548	INTERGENIC
3R	5994151	3R_5994151_SNP [dm3] 3R_10168429_SNP [dm6]	A	G	2.124e^-4	0.548	INTRON Best1	TF binding site mE1_TFBS_zfh1
3L	17875179	3L_17875179_SNP [dm3] 3L_17882079_SNP [dm6]	A	G	2.131e^-4	0.548	SYNONYMOUS_CODING CG7408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11116750	3L_11116750_DEL [dm3] 3L_11123650_DEL [dm6]	TTT	T	2.139e^-4	0.548	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7947259	3R_7947259_INS [dm3] 3R_12121537_INS [dm6]	A	AT	2.140e^-4	0.548	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2L	12779035	2L_12779035_SNP [dm3] 2L_12779035_SNP [dm6]	C	G	2.144e^-4	0.548	INTERGENIC
2R	16097859	2R_16097859_SNP [dm3] 2R_20210354_SNP [dm6]	C	T	2.144e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17638568	3L_17638568_SNP [dm3] 3L_17645468_SNP [dm6]	T	G	2.152e^-4	0.548	UPSTREAM Pep DOWNSTREAM CG43085 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	10749757	2L_10749757_SNP [dm3] 2L_10749757_SNP [dm6]	A	T	2.152e^-4	0.548	INTRON CG17124
X	3919091	X_3919091_SNP [dm3] X_4025058_SNP [dm6]	C	A	2.156e^-4	0.548	INTERGENIC
3L	13989660	3L_13989660_SNP [dm3] 3L_13996560_SNP [dm6]	A	G	2.183e^-4	0.548	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
3R	4965141	3R_4965141_SNP [dm3] 3R_9139419_SNP [dm6]	C	T	2.191e^-4	0.548	INTRON pum
3L	7217086	3L_7217086_SNP [dm3] 3L_7223986_SNP [dm6]	C	T	2.193e^-4	0.548	DOWNSTREAM CR45410 INTERGENIC
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	2.198e^-4	0.548	INTRON Ccn
3R	16238822	3R_16238822_SNP [dm3] 3R_20413100_SNP [dm6]	C	T	2.204e^-4	0.548	INTRON Gfrl
2L	4858786	2L_4858786_SNP [dm3] 2L_4858786_SNP [dm6]	G	C	2.206e^-4	0.548	INTRON pog
3L	3879694	3L_3879694_SNP [dm3] 3L_3879694_SNP [dm6]	T	A	2.211e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	2500527	3L_2500527_SNP [dm3] 3L_2500527_SNP [dm6]	T	A	2.220e^-4	0.548	INTRON CG16758	TF binding site mE1_TFBS_chinmo
3L	16747575	3L_16747575_SNP [dm3] 3L_16754475_SNP [dm6]	T	A	2.223e^-4	0.548	INTERGENIC
3L	11414867	3L_11414867_SNP [dm3] 3L_11421767_SNP [dm6]	A	C	2.226e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25043800	3R_25043800_DEL [dm3] 3R_29218078_DEL [dm6]	TAATCTATTTACAAT...	T	2.234e^-4	0.548	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11664253	3L_11664253_SNP [dm3] 3L_11671153_SNP [dm6]	T	C	2.246e^-4	0.548	INTRON CG32085
X	11152348	X_11152348_SNP [dm3] X_11258315_SNP [dm6]	G	A	2.248e^-4	0.548	INTRON CG44422
2R	5695907	2R_5695907_SNP [dm3] 2R_9808402_SNP [dm6]	A	C	2.252e^-4	0.548	INTERGENIC
3L	5230301	3L_5230301_SNP [dm3] 3L_5237201_SNP [dm6]	A	G	2.252e^-4	0.548	DOWNSTREAM CG4669 INTRON shep
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	2.257e^-4	0.548	INTERGENIC
2R	12170429	2R_12170429_SNP [dm3] 2R_16282924_SNP [dm6]	A	G	2.260e^-4	0.548	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_HSA
2R	12170451	2R_12170451_SNP [dm3] 2R_16282946_SNP [dm6]	T	A	2.260e^-4	0.548	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_HSA
3R	3703864	3R_3703864_SNP [dm3] 3R_7878142_SNP [dm6]	A	G	2.264e^-4	0.548	INTRON CG17816
3R	10602881	3R_10602881_SNP [dm3] 3R_14777159_SNP [dm6]	C	G	2.267e^-4	0.548	INTRON jvl	TF binding site BDTNP1_TFBS_twi
3R	10604462	3R_10604462_SNP [dm3] 3R_14778740_SNP [dm6]	C	T	2.267e^-4	0.548	INTRON jvl
2R	9661535	2R_9661535_SNP [dm3] 2R_13774030_SNP [dm6]	A	G	2.268e^-4	0.548	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	7134711	3L_7134711_SNP [dm3] 3L_7141611_SNP [dm6]	T	C	2.279e^-4	0.548	INTRON melt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5976474	X_5976474_SNP [dm3] X_6082441_SNP [dm6]	C	A	2.285e^-4	0.548	DOWNSTREAM raptor & 1 other INTERGENIC
3L	6111197	3L_6111197_SNP [dm3] 3L_6118097_SNP [dm6]	C	A	2.286e^-4	0.548	INTRON Ets65A
3L	6111207	3L_6111207_SNP [dm3] 3L_6118107_SNP [dm6]	G	A	2.286e^-4	0.548	INTRON Ets65A
2R	6543624	2R_6543624_SNP [dm3] 2R_10656119_SNP [dm6]	T	C	2.290e^-4	0.548	DOWNSTREAM CR44452 INTERGENIC
3L	19857637	3L_19857637_SNP [dm3] 3L_19864537_SNP [dm6]	A	T	2.291e^-4	0.548	INTERGENIC	transposable element FlyBase
3L	17636879	3L_17636879_SNP [dm3] 3L_17643779_SNP [dm6]	C	T	2.301e^-4	0.548	INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	18365757	2R_18365757_SNP [dm3] 2R_22478252_SNP [dm6]	T	A	2.302e^-4	0.548	UPSTREAM CG45063 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	21199429	3L_21199429_SNP [dm3] 3L_21206329_SNP [dm6]	T	C	2.304e^-4	0.548	SYNONYMOUS_CODING CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11865079	3L_11865079_SNP [dm3] 3L_11871979_SNP [dm6]	C	T	2.306e^-4	0.548	UPSTREAM CG5906 INTRON CG44837
3R	25798593	3R_25798593_SNP [dm3] 3R_29972871_SNP [dm6]	A	G	2.308e^-4	0.548	INTERGENIC
3L	15228422	3L_15228422_DEL [dm3] 3L_15235322_DEL [dm6]	TTT	T	2.310e^-4	0.548	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	13162666	X_13162666_INS [dm3] X_13268633_INS [dm6]	C	CGATACTGCCATC...	2.311e^-4	0.548	INTRON HDAC4
2R	19428728	2R_19428728_SNP [dm3] 2R_23541205_SNP [dm6]	A	G	2.319e^-4	0.548	UPSTREAM ppk3 INTRON Gr59e	TF binding site mE1_TFBS_cad
X	14539050	X_14539050_INS [dm3] X_14645017_INS [dm6]	T	TT	2.319e^-4	0.548	INTRON NetA
3R	918152	3R_918152_DEL [dm3] 3R_5092430_DEL [dm6]	ACGCT	A	2.324e^-4	0.548	INTERGENIC
2R	15033438	2R_15033438_SNP [dm3] 2R_19145933_SNP [dm6]	T	C	2.327e^-4	0.548	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
2L	13424788	2L_13424788_DEL [dm3] 2L_13424788_DEL [dm6]	TG	T	2.327e^-4	0.548	INTRON CG42784
3L	17683799	3L_17683799_SNP [dm3] 3L_17690699_SNP [dm6]	G	A	2.328e^-4	0.548	INTRON Ccn
3R	9946543	3R_9946543_SNP [dm3] 3R_14120821_SNP [dm6]	A	T	2.328e^-4	0.548	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9946551	3R_9946551_SNP [dm3] 3R_14120829_SNP [dm6]	A	G	2.328e^-4	0.548	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14698645	2R_14698645_SNP [dm3] 2R_18811140_SNP [dm6]	G	C	2.331e^-4	0.548	INTRON CG15096
X	13162510	X_13162510_SNP [dm3] X_13268477_SNP [dm6]	A	C	2.341e^-4	0.548	INTRON HDAC4
X	13162512	X_13162512_SNP [dm3] X_13268479_SNP [dm6]	C	A	2.341e^-4	0.548	INTRON HDAC4
3L	3009306	3L_3009306_SNP [dm3] 3L_3009306_SNP [dm6]	T	C	2.348e^-4	0.548	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3R	7952905	3R_7952905_SNP [dm3] 3R_12127183_SNP [dm6]	G	T	2.366e^-4	0.548	INTRON CG4702
3R	11190416	3R_11190416_SNP [dm3] 3R_15364694_SNP [dm6]	G	T	2.368e^-4	0.548	SYNONYMOUS_CODING CG34404 UPSTREAM CG6171	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2750037	3L_2750037_SNP [dm3] 3L_2750037_SNP [dm6]	A	T	2.372e^-4	0.548	INTRON Mrtf
2R	16393324	2R_16393324_SNP [dm3] 2R_20505819_SNP [dm6]	G	A	2.374e^-4	0.548	UPSTREAM CR44645 DOWNSTREAM CR44644 & 2 others INTERGENIC
3R	23410104	3R_23410104_SNP [dm3] 3R_27584382_SNP [dm6]	A	G	2.376e^-4	0.548	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23410117	3R_23410117_SNP [dm3] 3R_27584395_SNP [dm6]	C	T	2.376e^-4	0.548	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11590992	3L_11590992_SNP [dm3] 3L_11597892_SNP [dm6]	T	G	2.376e^-4	0.548	INTRON CG7368
2R	19396871	2R_19396871_SNP [dm3] 2R_23509348_SNP [dm6]	G	C	2.379e^-4	0.548	INTERGENIC
3L	20188448	3L_20188448_SNP [dm3] 3L_20195348_SNP [dm6]	G	A	2.381e^-4	0.548	INTRON CG42674
3R	27351338	3R_27351338_SNP [dm3] 3R_31525616_SNP [dm6]	T	C	2.387e^-4	0.548	INTERGENIC
2R	5594248	2R_5594248_SNP [dm3] 2R_9706743_SNP [dm6]	G	A	2.389e^-4	0.548	UPSTREAM CG10459 DOWNSTREAM CG30002 INTRON CG1773	regulatory region REDfly_CRMs
3R	918436	3R_918436_SNP [dm3] 3R_5092714_SNP [dm6]	C	T	2.398e^-4	0.548	INTERGENIC
2R	17902114	2R_17902114_SNP [dm3] 2R_22014609_SNP [dm6]	G	T	2.406e^-4	0.548	INTRON CG34370
3L	13947547	3L_13947547_SNP [dm3] 3L_13954447_SNP [dm6]	T	C	2.407e^-4	0.548	INTRON CG32137
3L	21291838	3L_21291838_SNP [dm3] 3L_21298738_SNP [dm6]	A	G	2.416e^-4	0.548	UPSTREAM CG43702 & 1 other INTRON CG43702	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8183987	3L_8183987_SNP [dm3] 3L_8190887_SNP [dm6]	T	A	2.421e^-4	0.548	UTR_3_PRIME Atg18a UPSTREAM MED24 DOWNSTREAM CG7387 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	2.421e^-4	0.548	INTRON axo
2R	9466252	2R_9466252_SNP [dm3] 2R_13578747_SNP [dm6]	C	T	2.422e^-4	0.548	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7929477	2L_7929477_SNP [dm3] 2L_7929477_SNP [dm6]	A	G	2.422e^-4	0.548	INTRON Snoo
2L	7929480	2L_7929480_MNP [dm3] 2L_7929480_MNP [dm6]	TTG	AAC	2.422e^-4	0.548	INTRON Snoo
2L	7929485	2L_7929485_SNP [dm3] 2L_7929485_SNP [dm6]	A	C	2.422e^-4	0.548	INTRON Snoo
2L	7929495	2L_7929495_SNP [dm3] 2L_7929495_SNP [dm6]	G	T	2.422e^-4	0.548	INTRON Snoo
2L	7929504	2L_7929504_SNP [dm3] 2L_7929504_SNP [dm6]	T	A	2.422e^-4	0.548	INTRON Snoo
2L	7929510	2L_7929510_SNP [dm3] 2L_7929510_SNP [dm6]	C	T	2.422e^-4	0.548	INTRON Snoo
3R	10604609	3R_10604609_SNP [dm3] 3R_14778887_SNP [dm6]	A	C	2.425e^-4	0.548	INTRON jvl
3L	7097325	3L_7097325_SNP [dm3] 3L_7104225_SNP [dm6]	A	G	2.431e^-4	0.548	INTRON form3
2R	10957313	2R_10957313_SNP [dm3] 2R_15069808_SNP [dm6]	C	G	2.436e^-4	0.548	INTERGENIC
3R	25789094	3R_25789094_SNP [dm3] 3R_29963372_SNP [dm6]	T	G	2.437e^-4	0.548	INTRON TkR99D
3L	11590742	3L_11590742_SNP [dm3] 3L_11597642_SNP [dm6]	G	A	2.441e^-4	0.548	INTRON CG7368
3L	11590758	3L_11590758_SNP [dm3] 3L_11597658_SNP [dm6]	A	T	2.441e^-4	0.548	INTRON CG7368
3L	11590769	3L_11590769_DEL [dm3] 3L_11597669_DEL [dm6]	CA	C	2.441e^-4	0.548	INTRON CG7368
3R	962708	3R_962708_SNP [dm3] 3R_5136986_SNP [dm6]	T	C	2.441e^-4	0.548	DOWNSTREAM CG12589 INTERGENIC
3L	17643154	3L_17643154_SNP [dm3] 3L_17650054_SNP [dm6]	G	C	2.444e^-4	0.548	NON_SYNONYMOUS_CODING Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17306523	3L_17306523_SNP [dm3] 3L_17313423_SNP [dm6]	A	T	2.448e^-4	0.548	INTERGENIC
3R	10817255	3R_10817255_SNP [dm3] 3R_14991533_SNP [dm6]	A	T	2.453e^-4	0.548	INTERGENIC
2R	16919465	2R_16919465_SNP [dm3] 2R_21031960_SNP [dm6]	A	T	2.454e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25548718	3R_25548718_SNP [dm3] 3R_29722996_SNP [dm6]	G	T	2.454e^-4	0.548	UTR_3_PRIME CG34296 UPSTREAM Pcd DOWNSTREAM CG15506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	10109800	3L_10109800_SNP [dm3] 3L_10116700_SNP [dm6]	A	T	2.457e^-4	0.548	INTRON dpr6
2R	4096402	2R_4096402_INS [dm3] 2R_8208897_INS [dm6]	A	AGGTA	2.460e^-4	0.548	INTRON LRP1
3L	13271316	3L_13271316_SNP [dm3] 3L_13278216_SNP [dm6]	A	G	2.462e^-4	0.548	UTR_3_PRIME caps
3L	15758615	3L_15758615_SNP [dm3] 3L_15765515_SNP [dm6]	T	C	2.464e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6735440	X_6735440_SNP [dm3] X_6841407_SNP [dm6]	T	C	2.465e^-4	0.548	INTRON CG14435
3R	27409513	3R_27409513_SNP [dm3] 3R_31583791_SNP [dm6]	T	C	2.469e^-4	0.548	SYNONYMOUS_CODING rod
2R	8511145	2R_8511145_SNP [dm3] 2R_12623640_SNP [dm6]	A	G	2.470e^-4	0.548	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
3L	3847880	3L_3847880_SNP [dm3] 3L_3847880_SNP [dm6]	G	A	2.472e^-4	0.548	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	6680836	2L_6680836_SNP [dm3] 2L_6680836_SNP [dm6]	C	T	2.473e^-4	0.548	INTRON Nhe3
2R	15294616	2R_15294616_SNP [dm3] 2R_19407111_SNP [dm6]	G	A	2.473e^-4	0.548	UTR_3_PRIME hts INTRON hts
3L	3369111	3L_3369111_SNP [dm3] 3L_3369111_SNP [dm6]	A	C	2.481e^-4	0.548	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2R	12615376	2R_12615376_SNP [dm3] 2R_16727871_SNP [dm6]	A	G	2.481e^-4	0.548	INTRON CG30463
2R	16611878	2R_16611878_SNP [dm3] 2R_20724373_SNP [dm6]	A	T	2.483e^-4	0.548	INTRON dpr	TF binding site mE1_TFBS_sbb
3R	5114847	3R_5114847_SNP [dm3] 3R_9289125_SNP [dm6]	T	A	2.483e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	8875977	2L_8875977_SNP [dm3] 2L_8875977_SNP [dm6]	C	T	2.483e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	2014421	3L_2014421_SNP [dm3] 3L_2014421_SNP [dm6]	T	C	2.484e^-4	0.548	INTERGENIC
2L	5111868	2L_5111868_SNP [dm3] 2L_5111868_SNP [dm6]	G	T	2.484e^-4	0.548	INTRON Msp300
2R	11830598	2R_11830598_SNP [dm3] 2R_15943093_SNP [dm6]	G	A	2.493e^-4	0.548	UPSTREAM CG30093 INTRON Cyp4aa1
2R	11290422	2R_11290422_SNP [dm3] 2R_15402917_SNP [dm6]	G	C	2.495e^-4	0.548	INTRON CG43729
3L	16755288	3L_16755288_SNP [dm3] 3L_16762188_SNP [dm6]	T	C	2.504e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	17645087	3L_17645087_SNP [dm3] 3L_17651987_SNP [dm6]	A	G	2.508e^-4	0.548	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4325628	3R_4325628_SNP [dm3] 3R_8499906_SNP [dm6]	T	C	2.520e^-4	0.548	INTERGENIC
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197253	3L_18197253_SNP [dm3] 3L_18204153_SNP [dm6]	C	G	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197267	3L_18197267_SNP [dm3] 3L_18204167_SNP [dm6]	A	T	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197270	3L_18197270_SNP [dm3] 3L_18204170_SNP [dm6]	T	A	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197273	3L_18197273_SNP [dm3] 3L_18204173_SNP [dm6]	T	A	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197275	3L_18197275_SNP [dm3] 3L_18204175_SNP [dm6]	G	C	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197276	3L_18197276_SNP [dm3] 3L_18204176_SNP [dm6]	G	T	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197278	3L_18197278_SNP [dm3] 3L_18204178_SNP [dm6]	A	T	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197280	3L_18197280_SNP [dm3] 3L_18204180_SNP [dm6]	A	T	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197284	3L_18197284_SNP [dm3] 3L_18204184_SNP [dm6]	C	G	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197286	3L_18197286_INS [dm3] 3L_18204186_INS [dm6]	T	TT	2.524e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27336462	3R_27336462_SNP [dm3] 3R_31510740_SNP [dm6]	C	T	2.531e^-4	0.548	INTERGENIC
3L	16563006	3L_16563006_SNP [dm3] 3L_16569906_SNP [dm6]	G	A	2.531e^-4	0.548	INTRON Mipp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2979560	3L_2979560_SNP [dm3] 3L_2979560_SNP [dm6]	T	G	2.543e^-4	0.548	INTERGENIC
3L	2979637	3L_2979637_SNP [dm3] 3L_2979637_SNP [dm6]	T	C	2.543e^-4	0.548	INTERGENIC
3L	2980192	3L_2980192_SNP [dm3] 3L_2980192_SNP [dm6]	T	G	2.543e^-4	0.548	UPSTREAM CG2107 INTERGENIC
3L	2981066	3L_2981066_SNP [dm3] 3L_2981066_SNP [dm6]	C	A	2.543e^-4	0.548	UTR_5_PRIME CG2107	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2981821	3L_2981821_SNP [dm3] 3L_2981821_SNP [dm6]	A	T	2.543e^-4	0.548	SYNONYMOUS_CODING CG2107	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2982154	3L_2982154_SNP [dm3] 3L_2982154_SNP [dm6]	C	T	2.543e^-4	0.548	SYNONYMOUS_CODING CG2107	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	3810460	X_3810460_DEL [dm3] X_3916427_DEL [dm6]	ATCA	A	2.549e^-4	0.548	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18836857	3L_18836857_SNP [dm3] 3L_18843757_SNP [dm6]	A	G	2.549e^-4	0.548	DOWNSTREAM CR32027 INTRON Indy
3L	18836906	3L_18836906_SNP [dm3] 3L_18843806_SNP [dm6]	C	T	2.549e^-4	0.548	INTRON Indy
3L	7189764	3L_7189764_SNP [dm3] 3L_7196664_SNP [dm6]	C	T	2.550e^-4	0.548	INTERGENIC
3L	18197196	3L_18197196_SNP [dm3] 3L_18204096_SNP [dm6]	G	A	2.553e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	18197255	3L_18197255_SNP [dm3] 3L_18204155_SNP [dm6]	T	G	2.553e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2985110	3L_2985110_SNP [dm3] 3L_2985110_SNP [dm6]	G	T	2.555e^-4	0.548	INTERGENIC
3L	17883695	3L_17883695_SNP [dm3] 3L_17890595_SNP [dm6]	T	G	2.558e^-4	0.548	SYNONYMOUS_CODING CG7402
2L	10629677	2L_10629677_SNP [dm3] 2L_10629677_SNP [dm6]	C	G	2.564e^-4	0.548	NON_SYNONYMOUS_CODING CG7329
2R	11304715	2R_11304715_SNP [dm3] 2R_15417210_SNP [dm6]	A	C	2.564e^-4	0.548	INTRON CG43729
2R	11304730	2R_11304730_SNP [dm3] 2R_15417225_SNP [dm6]	T	A	2.564e^-4	0.548	INTRON CG43729
2R	11304731	2R_11304731_SNP [dm3] 2R_15417226_SNP [dm6]	A	T	2.564e^-4	0.548	INTRON CG43729
2R	11304743	2R_11304743_SNP [dm3] 2R_15417238_SNP [dm6]	A	C	2.564e^-4	0.548	INTRON CG43729
2R	11304747	2R_11304747_SNP [dm3] 2R_15417242_SNP [dm6]	T	A	2.564e^-4	0.548	INTRON CG43729
2L	18902483	2L_18902483_SNP [dm3] 2L_18902483_SNP [dm6]	A	G	2.568e^-4	0.548	INTERGENIC
2L	9044365	2L_9044365_SNP [dm3] 2L_9044365_SNP [dm6]	G	C	2.571e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26302452	3R_26302452_SNP [dm3] 3R_30476730_SNP [dm6]	A	T	2.572e^-4	0.548	START_GAINED spdo UTR_5_PRIME spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9291467	3L_9291467_SNP [dm3] 3L_9298367_SNP [dm6]	A	T	2.575e^-4	0.548	INTERGENIC
2L	6132073	2L_6132073_SNP [dm3] 2L_6132073_SNP [dm6]	T	C	2.576e^-4	0.548	INTRON CG9222
3L	12277711	3L_12277711_SNP [dm3] 3L_12284611_SNP [dm6]	C	T	2.579e^-4	0.548	INTERGENIC
3R	11217576	3R_11217576_SNP [dm3] 3R_15391854_SNP [dm6]	A	C	2.582e^-4	0.548	INTRON Rbp	TF binding site mE1_TFBS_cad
3L	10242144	3L_10242144_SNP [dm3] 3L_10249044_SNP [dm6]	A	C	2.588e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3L	10242261	3L_10242261_SNP [dm3] 3L_10249161_SNP [dm6]	C	G	2.588e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3L	21278064	3L_21278064_SNP [dm3] 3L_21284964_SNP [dm6]	T	C	2.591e^-4	0.548	UTR_5_PRIME CG12974 INTRON CG12974	TF binding site BDTNP1_TFBS_dl
3L	21290777	3L_21290777_SNP [dm3] 3L_21297677_SNP [dm6]	C	T	2.591e^-4	0.548	UPSTREAM CG43702 DOWNSTREAM Cpr78Cb INTRON Edg78E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	21296526	3L_21296526_SNP [dm3] 3L_21303426_SNP [dm6]	G	T	2.591e^-4	0.548	NON_SYNONYMOUS_CODING CG11309	TF binding site mE1_TFBS_cad
X	4682346	X_4682346_DEL [dm3] X_4788313_DEL [dm6]	ACCCATTCAA	A	2.597e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_kn
3L	7281682	3L_7281682_SNP [dm3] 3L_7288582_SNP [dm6]	A	G	2.600e^-4	0.548	INTRON unc-13-4A
3R	27355321	3R_27355321_SNP [dm3] 3R_31529599_SNP [dm6]	G	T	2.604e^-4	0.548	INTERGENIC
3L	21150357	3L_21150357_SNP [dm3] 3L_21157257_SNP [dm6]	A	T	2.612e^-4	0.548	INTRON Ac78C
3L	17853328	3L_17853328_SNP [dm3] 3L_17860228_SNP [dm6]	T	G	2.614e^-4	0.548	SYNONYMOUS_CODING CG34002
2L	10629724	2L_10629724_SNP [dm3] 2L_10629724_SNP [dm6]	T	C	2.616e^-4	0.548	SYNONYMOUS_CODING CG7329
3L	12978525	3L_12978525_SNP [dm3] 3L_12985425_SNP [dm6]	C	T	2.621e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14264589	2L_14264589_INS [dm3] 2L_14264589_INS [dm6]	T	ATC	2.622e^-4	0.548	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5666711	3L_5666711_SNP [dm3] 3L_5673611_SNP [dm6]	G	A	2.627e^-4	0.548	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16755247	3L_16755247_SNP [dm3] 3L_16762147_SNP [dm6]	T	G	2.629e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16755250	3L_16755250_SNP [dm3] 3L_16762150_SNP [dm6]	T	G	2.629e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18071764	3L_18071764_SNP [dm3] 3L_18078664_SNP [dm6]	T	C	2.633e^-4	0.548	DOWNSTREAM CR45392 INTERGENIC
2R	17750901	2R_17750901_SNP [dm3] 2R_21863396_SNP [dm6]	C	G	2.633e^-4	0.548	INTERGENIC
3R	845176	3R_845176_SNP [dm3] 3R_5019454_SNP [dm6]	A	T	2.638e^-4	0.548	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
2L	14357290	2L_14357290_SNP [dm3] 2L_14357290_SNP [dm6]	A	C	2.639e^-4	0.548	UTR_5_PRIME Rab14 UPSTREAM CR44851 INTRON Rab14
3R	25503299	3R_25503299_SNP [dm3] 3R_29677577_SNP [dm6]	C	A	2.640e^-4	0.548	INTRON Cap-D2
2L	355957	2L_355957_SNP [dm3] 2L_355957_SNP [dm6]	C	T	2.640e^-4	0.548	SYNONYMOUS_CODING Ent1 DOWNSTREAM Plc21C EXON CR45367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	356206	2L_356206_SNP [dm3] 2L_356206_SNP [dm6]	C	T	2.640e^-4	0.548	SYNONYMOUS_CODING Ent1 DOWNSTREAM Plc21C EXON CR45367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	356221	2L_356221_SNP [dm3] 2L_356221_SNP [dm6]	T	A	2.640e^-4	0.548	NON_SYNONYMOUS_CODING Ent1 DOWNSTREAM Plc21C EXON CR45367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13822961	2L_13822961_SNP [dm3] 2L_13822961_SNP [dm6]	T	C	2.646e^-4	0.548	NON_SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8367566	3R_8367566_SNP [dm3] 3R_12541844_SNP [dm6]	T	G	2.651e^-4	0.548	INTRON Octbeta3R
3L	3354442	3L_3354442_SNP [dm3] 3L_3354442_SNP [dm6]	G	A	2.653e^-4	0.548	INTRON kst	TF binding site mE1_TFBS_cad
2L	13415200	2L_13415200_SNP [dm3] 2L_13415200_SNP [dm6]	C	T	2.657e^-4	0.548	UPSTREAM CG42784 & 2 others INTERGENIC
3L	1283707	3L_1283707_SNP [dm3] 3L_1283707_SNP [dm6]	C	A	2.662e^-4	0.548	UTR_5_PRIME CG32333
X	14762881	X_14762881_SNP [dm3] X_14868848_SNP [dm6]	T	C	2.664e^-4	0.548	INTRON Flo2 & 1 other
2R	15294701	2R_15294701_SNP [dm3] 2R_19407196_SNP [dm6]	A	T	2.665e^-4	0.548	INTRON hts
3R	27354997	3R_27354997_SNP [dm3] 3R_31529275_SNP [dm6]	G	A	2.666e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	21339896	3L_21339896_SNP [dm3] 3L_21346796_SNP [dm6]	C	T	2.675e^-4	0.548	UTR_5_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	9151766	2R_9151766_SNP [dm3] 2R_13264261_SNP [dm6]	C	T	2.687e^-4	0.548	UTR_3_PRIME CG42319 DOWNSTREAM CG42319 INTRON CG42319
3R	16082936	3R_16082936_SNP [dm3] 3R_20257214_SNP [dm6]	A	G	2.699e^-4	0.548	INTRON cic	TF binding site BDTNP1_TFBS_dl
3L	6533546	3L_6533546_SNP [dm3] 3L_6540446_SNP [dm6]	C	G	2.700e^-4	0.548	INTRON sfl
3L	4059459	3L_4059459_SNP [dm3] 3L_4059459_SNP [dm6]	A	T	2.702e^-4	0.548	UTR_3_PRIME CG1136 UPSTREAM CG18869
3L	3639478	3L_3639478_SNP [dm3] 3L_3639478_SNP [dm6]	T	G	2.703e^-4	0.548	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3628838	3R_3628838_SNP [dm3] 3R_7803116_SNP [dm6]	G	A	2.709e^-4	0.548	NON_SYNONYMOUS_CODING CG18268 UPSTREAM CG3014
3R	21738630	3R_21738630_SNP [dm3] 3R_25912908_SNP [dm6]	C	T	2.713e^-4	0.548	UTR_3_PRIME CG42235 INTRON CG42235
3L	7097979	3L_7097979_SNP [dm3] 3L_7104879_SNP [dm6]	T	C	2.717e^-4	0.548	INTRON form3
2R	6343862	2R_6343862_INS [dm3] 2R_10456357_INS [dm6]	A	ACCCCC	2.718e^-4	0.548	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	6343863	2R_6343863_SNP [dm3] 2R_10456358_SNP [dm6]	T	C	2.718e^-4	0.548	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	9663646	2R_9663646_SNP [dm3] 2R_13776141_SNP [dm6]	C	T	2.719e^-4	0.548	NON_SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16955834	2R_16955834_SNP [dm3] 2R_21068329_SNP [dm6]	G	A	2.721e^-4	0.548	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
3L	21335515	3L_21335515_SNP [dm3] 3L_21342415_SNP [dm6]	C	T	2.722e^-4	0.548	SYNONYMOUS_CODING CG7324
3L	7633958	3L_7633958_SNP [dm3] 3L_7640858_SNP [dm6]	G	T	2.723e^-4	0.548	NON_SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13060245	3L_13060245_SNP [dm3] 3L_13067145_SNP [dm6]	C	T	2.728e^-4	0.548	INTERGENIC
3L	16019892	3L_16019892_SNP [dm3] 3L_16026792_SNP [dm6]	G	A	2.739e^-4	0.548	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27350675	3R_27350675_SNP [dm3] 3R_31524953_SNP [dm6]	G	A	2.741e^-4	0.548	INTERGENIC
2R	12767680	2R_12767680_DEL [dm3] 2R_16880175_DEL [dm6]	GT	G	2.741e^-4	0.548	UPSTREAM CG6472 INTRON CG8910
2L	9350349	2L_9350349_SNP [dm3] 2L_9350349_SNP [dm6]	G	A	2.755e^-4	0.548	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
3L	17637695	3L_17637695_INS [dm3] 3L_17644595_INS [dm6]	C	TA	2.757e^-4	0.548	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17637932	3L_17637932_SNP [dm3] 3L_17644832_SNP [dm6]	G	C	2.757e^-4	0.548	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	17638587	3L_17638587_SNP [dm3] 3L_17645487_SNP [dm6]	T	A	2.757e^-4	0.548	UTR_3_PRIME CG43085 UPSTREAM Pep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	18197285	3L_18197285_SNP [dm3] 3L_18204185_SNP [dm6]	C	A	2.775e^-4	0.548	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5688609	2R_5688609_SNP [dm3] 2R_9801104_SNP [dm6]	G	T	2.776e^-4	0.548	INTRON CG1688
3L	11537424	3L_11537424_SNP [dm3] 3L_11544324_SNP [dm6]	T	C	2.777e^-4	0.548	INTRON Mob2
2R	9151867	2R_9151867_SNP [dm3] 2R_13264362_SNP [dm6]	C	A	2.778e^-4	0.548	SPLICE_SITE_REGION CG42319 DOWNSTREAM CG42319 INTRON CG42319
3R	15489738	3R_15489738_SNP [dm3] 3R_19664016_SNP [dm6]	T	G	2.779e^-4	0.548	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
3L	6020432	3L_6020432_DEL [dm3] 3L_6027332_DEL [dm6]	ACT	A	2.781e^-4	0.548	INTERGENIC
3L	19863870	3L_19863870_SNP [dm3] 3L_19870770_SNP [dm6]	A	G	2.781e^-4	0.548	UTR_5_PRIME Rab8 UPSTREAM CG8334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16394582	2L_16394582_SNP [dm3] 2L_16394582_SNP [dm6]	C	T	2.783e^-4	0.548	INTERGENIC
3L	2983717	3L_2983717_SNP [dm3] 3L_2983717_SNP [dm6]	A	G	2.785e^-4	0.548	DOWNSTREAM CG2107 INTERGENIC
X	6475698	X_6475698_SNP [dm3] X_6581665_SNP [dm6]	C	T	2.785e^-4	0.548	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7531758	3L_7531758_INS [dm3] 3L_7538658_INS [dm6]	T	TGGGGATGTGGGGAT...	2.786e^-4	0.548	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3R	27366330	3R_27366330_SNP [dm3] 3R_31540608_SNP [dm6]	A	G	2.787e^-4	0.548	INTERGENIC
3L	1076908	3L_1076908_SNP [dm3] 3L_1076908_SNP [dm6]	T	G	2.790e^-4	0.548	INTRON bab1
3L	7252690	3L_7252690_SNP [dm3] 3L_7259590_SNP [dm6]	T	G	2.795e^-4	0.548	INTRON CG14830
3R	13601137	3R_13601137_SNP [dm3] 3R_17775415_SNP [dm6]	G	C	2.800e^-4	0.548	START_GAINED CG43102 UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13601314	3R_13601314_SNP [dm3] 3R_17775592_SNP [dm6]	T	C	2.800e^-4	0.548	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4204471	2L_4204471_SNP [dm3] 2L_4204471_SNP [dm6]	G	T	2.803e^-4	0.548	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2R	20425599	2R_20425599_SNP [dm3] 2R_24538076_SNP [dm6]	A	G	2.804e^-4	0.548	INTRON CG4622 & 1 other
3L	16472409	3L_16472409_SNP [dm3] 3L_16479309_SNP [dm6]	G	A	2.812e^-4	0.548	INTRON CG33158 & 1 other
X	4680228	X_4680228_SNP [dm3] X_4786195_SNP [dm6]	G	T	2.812e^-4	0.548	DOWNSTREAM CG6978 INTERGENIC
X	4682772	X_4682772_SNP [dm3] X_4788739_SNP [dm6]	G	A	2.812e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_kn
X	4682916	X_4682916_INS [dm3] X_4788883_INS [dm6]	A	ACG	2.812e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_kn
X	4683075	X_4683075_SNP [dm3] X_4789042_SNP [dm6]	T	A	2.812e^-4	0.548	INTERGENIC
3R	10411610	3R_10411610_SNP [dm3] 3R_14585888_SNP [dm6]	A	T	2.813e^-4	0.548	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10411612	3R_10411612_DEL [dm3] 3R_14585890_DEL [dm6]	GA	C	2.813e^-4	0.548	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3590136	3R_3590136_SNP [dm3] 3R_7764414_SNP [dm6]	A	T	2.816e^-4	0.548	DOWNSTREAM Sp7 INTERGENIC
3L	11637308	3L_11637308_SNP [dm3] 3L_11644208_SNP [dm6]	C	T	2.816e^-4	0.548	SYNONYMOUS_CODING CG6071
2L	8874521	2L_8874521_SNP [dm3] 2L_8874521_SNP [dm6]	G	A	2.818e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7928966	2L_7928966_SNP [dm3] 2L_7928966_SNP [dm6]	A	G	2.820e^-4	0.548	INTRON Snoo
2L	8782549	2L_8782549_SNP [dm3] 2L_8782549_SNP [dm6]	G	A	2.820e^-4	0.548	UPSTREAM CG42710 INTERGENIC
3L	21214804	3L_21214804_INS [dm3] 3L_21221704_INS [dm6]	A	AGGCAAA	2.820e^-4	0.548	INTRON CG43219
2L	19978072	2L_19978072_SNP [dm3] 2L_19978072_SNP [dm6]	C	T	2.823e^-4	0.548	UPSTREAM CR43620 INTRON CG43861
2L	7682229	2L_7682229_SNP [dm3] 2L_7682229_SNP [dm6]	C	T	2.830e^-4	0.548	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_sens
2R	13994405	2R_13994405_SNP [dm3] 2R_18106900_SNP [dm6]	G	A	2.833e^-4	0.548	INTRON CG5756
3R	2246246	3R_2246246_SNP [dm3] 3R_6420524_SNP [dm6]	C	T	2.846e^-4	0.548	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17363167	2R_17363167_SNP [dm3] 2R_21475662_SNP [dm6]	C	G	2.846e^-4	0.548	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5593825	2R_5593825_SNP [dm3] 2R_9706320_SNP [dm6]	T	C	2.847e^-4	0.548	NON_SYNONYMOUS_CODING CG1773 DOWNSTREAM CG30002
3L	10307587	3L_10307587_SNP [dm3] 3L_10314487_SNP [dm6]	A	T	2.848e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12133181	3L_12133181_SNP [dm3] 3L_12140081_SNP [dm6]	T	C	2.852e^-4	0.548	UTR_5_PRIME RhoGAP68F
2R	9152055	2R_9152055_SNP [dm3] 2R_13264550_SNP [dm6]	A	G	2.857e^-4	0.548	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
2R	9152299	2R_9152299_SNP [dm3] 2R_13264794_SNP [dm6]	T	C	2.857e^-4	0.548	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3R	27355129	3R_27355129_SNP [dm3] 3R_31529407_SNP [dm6]	A	G	2.865e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	21253000	3L_21253000_SNP [dm3] 3L_21259900_SNP [dm6]	G	C	2.873e^-4	0.548	INTRON Eip78C
2L	11807826	2L_11807826_SNP [dm3] 2L_11807826_SNP [dm6]	G	T	2.873e^-4	0.548	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25547858	3R_25547858_SNP [dm3] 3R_29722136_SNP [dm6]	C	A	2.875e^-4	0.548	NON_SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3L	10242185	3L_10242185_SNP [dm3] 3L_10249085_SNP [dm6]	T	A	2.877e^-4	0.548	UPSTREAM CR44540 INTERGENIC
3R	25678193	3R_25678193_SNP [dm3] 3R_29852471_SNP [dm6]	G	A	2.881e^-4	0.548	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6535509	3L_6535509_SNP [dm3] 3L_6542409_SNP [dm6]	C	G	2.884e^-4	0.548	INTRON sfl
3L	4537641	3L_4537641_SNP [dm3] 3L_4537641_SNP [dm6]	T	C	2.895e^-4	0.548	SYNONYMOUS_CODING CG11353
3L	10685736	3L_10685736_SNP [dm3] 3L_10692636_SNP [dm6]	A	G	2.896e^-4	0.548	UTR_3_PRIME CG33493 DOWNSTREAM CG6463 & 1 other
3R	10604636	3R_10604636_SNP [dm3] 3R_14778914_SNP [dm6]	T	C	2.900e^-4	0.548	INTRON jvl
2L	2266663	2L_2266663_SNP [dm3] 2L_2266663_SNP [dm6]	A	G	2.903e^-4	0.548	INTERGENIC
3R	12907478	3R_12907478_SNP [dm3] 3R_17081756_SNP [dm6]	T	A	2.907e^-4	0.548	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17772636	3R_17772636_SNP [dm3] 3R_21946914_SNP [dm6]	C	T	2.907e^-4	0.548	INTERGENIC
2L	12682295	2L_12682295_SNP [dm3] 2L_12682295_SNP [dm6]	T	C	2.909e^-4	0.548	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	2186916	2L_2186916_SNP [dm3] 2L_2186916_SNP [dm6]	T	A	2.912e^-4	0.548	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11590795	3L_11590795_SNP [dm3] 3L_11597695_SNP [dm6]	T	C	2.914e^-4	0.548	INTRON CG7368
2R	16690130	2R_16690130_SNP [dm3] 2R_20802625_SNP [dm6]	A	C	2.918e^-4	0.548	INTERGENIC
2R	5688585	2R_5688585_SNP [dm3] 2R_9801080_SNP [dm6]	A	T	2.920e^-4	0.548	INTRON CG1688
3R	5304629	3R_5304629_SNP [dm3] 3R_9478907_SNP [dm6]	A	C	2.932e^-4	0.548	INTRON CG16779
3R	5304781	3R_5304781_DEL [dm3] 3R_9479059_DEL [dm6]	GTCGGTGGG	G	2.932e^-4	0.548	INTRON CG16779
3R	5317463	3R_5317463_SNP [dm3] 3R_9491741_SNP [dm6]	T	A	2.932e^-4	0.548	INTRON CG16779
3R	5321753	3R_5321753_SNP [dm3] 3R_9496031_SNP [dm6]	C	T	2.932e^-4	0.548	SYNONYMOUS_CODING CG8147	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	5322572	3R_5322572_SNP [dm3] 3R_9496850_SNP [dm6]	C	T	2.932e^-4	0.548	DOWNSTREAM RhoL & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	5322588	3R_5322588_SNP [dm3] 3R_9496866_SNP [dm6]	G	C	2.932e^-4	0.548	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	5322798	3R_5322798_SNP [dm3] 3R_9497076_SNP [dm6]	G	A	2.932e^-4	0.548	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	7953618	3R_7953618_SNP [dm3] 3R_12127896_SNP [dm6]	A	G	2.932e^-4	0.548	UTR_5_PRIME CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17362718	2R_17362718_SNP [dm3] 2R_21475213_SNP [dm6]	T	C	2.938e^-4	0.548	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	5666865	3L_5666865_SNP [dm3] 3L_5673765_SNP [dm6]	T	C	2.939e^-4	0.548	SPLICE_SITE_REGION sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14890468	3R_14890468_SNP [dm3] 3R_19064746_SNP [dm6]	G	C	2.946e^-4	0.548	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3L	6535431	3L_6535431_SNP [dm3] 3L_6542331_SNP [dm6]	C	T	2.948e^-4	0.548	INTRON sfl
3L	7836295	3L_7836295_SNP [dm3] 3L_7843195_SNP [dm6]	A	T	2.951e^-4	0.548	INTRON Pdp1	regulatory region REDfly_CRMs
2R	9660096	2R_9660096_SNP [dm3] 2R_13772591_SNP [dm6]	A	C	2.951e^-4	0.548	INTRON Cpr50Ca
3L	17883380	3L_17883380_SNP [dm3] 3L_17890280_SNP [dm6]	T	A	2.952e^-4	0.548	INTRON CG7402
3L	4659265	3L_4659265_SNP [dm3] 3L_4659265_SNP [dm6]	C	A	2.952e^-4	0.548	INTRON axo
2R	10007072	2R_10007072_SNP [dm3] 2R_14119567_SNP [dm6]	C	T	2.956e^-4	0.548	INTRON Prosap
3L	7633924	3L_7633924_SNP [dm3] 3L_7640824_SNP [dm6]	C	T	2.958e^-4	0.548	SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5582111	3R_5582111_SNP [dm3] 3R_9756389_SNP [dm6]	C	T	2.958e^-4	0.548	UPSTREAM CG8412 & 1 other INTRON Rpt3R	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5590379	3R_5590379_SNP [dm3] 3R_9764657_SNP [dm6]	T	C	2.958e^-4	0.548	INTRON CG8478	TF binding site mE1_TFBS_sens
3R	16083025	3R_16083025_SNP [dm3] 3R_20257303_SNP [dm6]	T	C	2.961e^-4	0.548	INTRON cic	TF binding site BDTNP1_TFBS_dl
3L	21265313	3L_21265313_SNP [dm3] 3L_21272213_SNP [dm6]	C	T	2.968e^-4	0.548	INTRON AcCoAS
2R	7334214	2R_7334214_SNP [dm3] 2R_11446709_SNP [dm6]	A	T	2.968e^-4	0.548	INTRON qvr
3L	5336759	3L_5336759_SNP [dm3] 3L_5343659_SNP [dm6]	A	T	2.970e^-4	0.548	UTR_3_PRIME lama
3L	4659154	3L_4659154_SNP [dm3] 3L_4659154_SNP [dm6]	T	G	2.972e^-4	0.548	INTRON axo
3L	4659156	3L_4659156_SNP [dm3] 3L_4659156_SNP [dm6]	C	A	2.972e^-4	0.548	INTRON axo
3L	3423097	3L_3423097_SNP [dm3] 3L_3423097_SNP [dm6]	T	A	2.978e^-4	0.548	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	21326752	3L_21326752_SNP [dm3] 3L_21333652_SNP [dm6]	C	T	2.982e^-4	0.548	INTRON Rab26
2R	15304395	2R_15304395_SNP [dm3] 2R_19416890_SNP [dm6]	C	A	2.986e^-4	0.548	INTRON hts
2L	12406445	2L_12406445_SNP [dm3] 2L_12406445_SNP [dm6]	T	A	2.988e^-4	0.548	DOWNSTREAM vir-1 INTRON vir-1
X	10024469	X_10024469_SNP [dm3] X_10130436_SNP [dm6]	T	C	2.988e^-4	0.548	INTRON CR44894 & 1 other
3L	3617452	3L_3617452_SNP [dm3] 3L_3617452_SNP [dm6]	A	G	2.992e^-4	0.548	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	17363627	2R_17363627_SNP [dm3] 2R_21476122_SNP [dm6]	T	A	2.994e^-4	0.548	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19980433	2L_19980433_SNP [dm3] 2L_19980433_SNP [dm6]	A	T	2.998e^-4	0.548	DOWNSTREAM CR43620 INTRON CG43861
3R	6093050	3R_6093050_SNP [dm3] 3R_10267328_SNP [dm6]	C	T	3.000e^-4	0.548	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17902165	2R_17902165_SNP [dm3] 2R_22014660_SNP [dm6]	C	G	3.007e^-4	0.548	INTRON CG34370
3R	26982735	3R_26982735_SNP [dm3] 3R_31157013_SNP [dm6]	C	A	3.010e^-4	0.548	INTRON Gycbeta100B
2L	19952504	2L_19952504_SNP [dm3] 2L_19952504_SNP [dm6]	G	A	3.012e^-4	0.548	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8879569	3L_8879569_SNP [dm3] 3L_8886469_SNP [dm6]	A	G	3.027e^-4	0.548	INTRON dally
2L	19990579	2L_19990579_SNP [dm3] 2L_19990579_SNP [dm6]	C	T	3.039e^-4	0.548	INTRON CG43861
2R	10337450	2R_10337450_SNP [dm3] 2R_14449945_SNP [dm6]	G	A	3.041e^-4	0.548	INTRON Oaz
3L	2008938	3L_2008938_SNP [dm3] 3L_2008938_SNP [dm6]	T	C	3.043e^-4	0.548	EXON CR44535
X	4893223	X_4893223_SNP [dm3] X_4999190_SNP [dm6]	G	C	3.044e^-4	0.548	DOWNSTREAM CG12680 INTRON CR44833	regulatory region REDfly_CRMs
3R	16239290	3R_16239290_SNP [dm3] 3R_20413568_SNP [dm6]	C	T	3.052e^-4	0.548	INTRON Gfrl
3R	5315344	3R_5315344_SNP [dm3] 3R_9489622_SNP [dm6]	C	T	3.054e^-4	0.548	INTRON CG16779
2R	7700315	2R_7700315_DEL [dm3] 2R_11812810_DEL [dm6]	AA	A	3.064e^-4	0.548	UTR_3_PRIME ths DOWNSTREAM ths
3R	5571741	3R_5571741_SNP [dm3] 3R_9746019_SNP [dm6]	T	A	3.068e^-4	0.548	UTR_5_PRIME CG34409 DOWNSTREAM CG12948	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27336509	3R_27336509_SNP [dm3] 3R_31510787_SNP [dm6]	A	C	3.071e^-4	0.548	INTERGENIC
3L	17883828	3L_17883828_SNP [dm3] 3L_17890728_SNP [dm6]	G	A	3.075e^-4	0.548	NON_SYNONYMOUS_CODING CG7402
2R	3075136	2R_3075136_SNP [dm3] 2R_7187631_SNP [dm6]	C	A	3.078e^-4	0.548	INTRON pk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	23055704	3R_23055704_SNP [dm3] 3R_27229982_SNP [dm6]	G	A	3.079e^-4	0.548	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12134516	2L_12134516_SNP [dm3] 2L_12134516_SNP [dm6]	C	A	3.080e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19705604	2R_19705604_SNP [dm3] 2R_23818081_SNP [dm6]	G	A	3.081e^-4	0.548	UTR_5_PRIME CG4797

Missing results

By genomic position
Variant impact
Gene name

pc_KP_PElem_SS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results