DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.862e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1990 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16960128	2R_16960128_SNP [dm3] 2R_21072623_SNP [dm6]	A	G	3.932e^-7	0.402	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2R	16959828	2R_16959828_SNP [dm3] 2R_21072323_SNP [dm6]	C	G	4.596e^-7	0.402	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2R	16959829	2R_16959829_SNP [dm3] 2R_21072324_SNP [dm6]	T	G	8.214e^-7	0.402	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
X	20434979	X_20434979_SNP [dm3] X_20563952_SNP [dm6]	C	A	1.100e^-6	0.402	INTRON RunxB
3R	8400796	3R_8400796_SNP [dm3] 3R_12575074_SNP [dm6]	A	G	1.106e^-6	0.402	INTRON Octbeta2R
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	1.991e^-6	0.603	INTRON CG7888
2L	7644136	2L_7644136_SNP [dm3] 2L_7644136_SNP [dm6]	T	A	3.484e^-6	0.704	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2R	16959715	2R_16959715_SNP [dm3] 2R_21072210_SNP [dm6]	C	T	3.530e^-6	0.704	DOWNSTREAM CR44704 INTRON CG10527
2R	16959744	2R_16959744_SNP [dm3] 2R_21072239_SNP [dm6]	A	G	3.530e^-6	0.704	DOWNSTREAM CR44704 INTRON CG10527
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	3.875e^-6	0.704	INTRON CG7470
2R	16959726	2R_16959726_SNP [dm3] 2R_21072221_SNP [dm6]	G	A	4.300e^-6	0.71	DOWNSTREAM CR44704 INTRON CG10527
2R	19341961	2R_19341961_SNP [dm3] 2R_23454438_SNP [dm6]	T	C	4.853e^-6	0.735	INTRON CG43795
X	8151464	X_8151464_SNP [dm3] X_8257431_SNP [dm6]	G	T	6.215e^-6	0.761	INTRON CG1632
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	6.344e^-6	0.761	INTERGENIC
2R	16959837	2R_16959837_SNP [dm3] 2R_21072332_SNP [dm6]	A	C	6.696e^-6	0.761	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	14244718	3L_14244718_SNP [dm3] 3L_14251618_SNP [dm6]	T	G	7.298e^-6	0.761	INTERGENIC
2R	14346359	2R_14346359_SNP [dm3] 2R_18458854_SNP [dm6]	A	C	7.677e^-6	0.761	DOWNSTREAM CG30116 INTRON CG30116
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	8.039e^-6	0.761	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11122657	3L_11122657_SNP [dm3] 3L_11129557_SNP [dm6]	A	G	8.178e^-6	0.761	UTR_5_PRIME CG42575
X	20434973	X_20434973_SNP [dm3] X_20563946_SNP [dm6]	C	T	8.449e^-6	0.761	INTRON RunxB
3R	15301280	3R_15301280_SNP [dm3] 3R_19475558_SNP [dm6]	G	C	8.911e^-6	0.761	INTRON Dys	TF binding site mE1_TFBS_inv
3L	14068289	3L_14068289_SNP [dm3] 3L_14075189_SNP [dm6]	G	T	9.554e^-6	0.761	SYNONYMOUS_CODING Pex1 UPSTREAM btl
3L	13277233	3L_13277233_SNP [dm3] 3L_13284133_SNP [dm6]	T	G	1.037e^-5	0.761	DOWNSTREAM CR43146 INTRON CR43913 EXON CR43913
X	4884063	X_4884063_SNP [dm3] X_4990030_SNP [dm6]	C	T	1.192e^-5	0.761	INTRON CR44833
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	1.398e^-5	0.761	INTRON fred
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	1.464e^-5	0.761	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	1.464e^-5	0.761	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	1.464e^-5	0.761	INTRON CG7470
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	1.495e^-5	0.761	INTERGENIC
X	18639411	X_18639411_SNP [dm3] X_18745378_SNP [dm6]	C	A	1.539e^-5	0.761	DOWNSTREAM CG12609 INTERGENIC
2L	15325079	2L_15325079_SNP [dm3] 2L_15325079_SNP [dm6]	A	G	1.601e^-5	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18639467	X_18639467_SNP [dm3] X_18745434_SNP [dm6]	T	A	1.626e^-5	0.761	DOWNSTREAM CG12609 INTERGENIC
3R	23749487	3R_23749487_SNP [dm3] 3R_27923765_SNP [dm6]	A	G	1.633e^-5	0.761	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	1.682e^-5	0.761	INTRON axo
X	20434955	X_20434955_SNP [dm3] X_20563928_SNP [dm6]	C	T	1.766e^-5	0.761	INTRON RunxB
X	8151420	X_8151420_SNP [dm3] X_8257387_SNP [dm6]	A	T	1.841e^-5	0.761	INTRON CG1632
3L	8958470	3L_8958470_SNP [dm3] 3L_8965370_SNP [dm6]	G	A	1.853e^-5	0.761	SYNONYMOUS_CODING CG5653 UPSTREAM CG5660	TF binding site mE1_TFBS_chinmo
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	1.897e^-5	0.761	INTRON axo
2R	17132293	2R_17132293_INS [dm3] 2R_21244788_INS [dm6]	C	CC	2.048e^-5	0.761	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2L	2079325	2L_2079325_SNP [dm3] 2L_2079325_SNP [dm6]	A	G	2.057e^-5	0.761	UPSTREAM CG12674 INTRON dpr3
2L	5885421	2L_5885421_SNP [dm3] 2L_5885421_SNP [dm6]	T	C	2.085e^-5	0.761	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
2L	5466268	2L_5466268_SNP [dm3] 2L_5466268_SNP [dm6]	C	T	2.114e^-5	0.761	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26240869	3R_26240869_SNP [dm3] 3R_30415147_SNP [dm6]	T	C	2.126e^-5	0.761	INTERGENIC
2R	16959766	2R_16959766_SNP [dm3] 2R_21072261_SNP [dm6]	G	T	2.136e^-5	0.761	DOWNSTREAM CR44704 INTRON CG10527
3L	11132689	3L_11132689_SNP [dm3] 3L_11139589_SNP [dm6]	A	C	2.208e^-5	0.761	INTRON CG32082
3L	11132693	3L_11132693_SNP [dm3] 3L_11139593_SNP [dm6]	T	C	2.208e^-5	0.761	INTRON CG32082
3L	11132756	3L_11132756_SNP [dm3] 3L_11139656_SNP [dm6]	C	G	2.208e^-5	0.761	INTRON CG32082
3R	23613233	3R_23613233_SNP [dm3] 3R_27787511_SNP [dm6]	C	A	2.228e^-5	0.761	INTRON CG34353
3L	13060245	3L_13060245_SNP [dm3] 3L_13067145_SNP [dm6]	C	T	2.236e^-5	0.761	INTERGENIC
3L	11126371	3L_11126371_SNP [dm3] 3L_11133271_SNP [dm6]	G	T	2.281e^-5	0.761	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2079327	2L_2079327_SNP [dm3] 2L_2079327_SNP [dm6]	G	A	2.285e^-5	0.761	UPSTREAM CG12674 INTRON dpr3
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	2.349e^-5	0.761	UPSTREAM CG32074 INTRON CG42575
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	2.364e^-5	0.761	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	2.364e^-5	0.761	INTERGENIC
3R	10249102	3R_10249102_SNP [dm3] 3R_14423380_SNP [dm6]	T	C	2.377e^-5	0.761	UPSTREAM CR44176 INTRON cv-c
2R	12342554	2R_12342554_SNP [dm3] 2R_16455049_SNP [dm6]	T	C	2.461e^-5	0.761	INTERGENIC
3R	11539917	3R_11539917_DEL [dm3] 3R_15714195_DEL [dm6]	GCGTTGAGTTG...	G	2.524e^-5	0.761	INTERGENIC
2R	13357309	2R_13357309_SNP [dm3] 2R_17469804_SNP [dm6]	A	G	2.534e^-5	0.761	UTR_5_PRIME qkr54B UPSTREAM Tes INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5885453	2L_5885453_SNP [dm3] 2L_5885453_SNP [dm6]	A	G	2.612e^-5	0.761	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	2.648e^-5	0.761	INTRON axo
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	2.654e^-5	0.761	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	2.654e^-5	0.761	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	2.654e^-5	0.761	INTRON axo
2L	13328028	2L_13328028_DEL [dm3] 2L_13328028_DEL [dm6]	GCTATG	A	2.738e^-5	0.761	INTRON CG43778
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	2.749e^-5	0.761	UPSTREAM CG44252 INTERGENIC
3R	6315006	3R_6315006_SNP [dm3] 3R_10489284_SNP [dm6]	T	A	2.766e^-5	0.761	EXON CR45576
3R	3867858	3R_3867858_SNP [dm3] 3R_8042136_SNP [dm6]	A	G	2.839e^-5	0.765	DOWNSTREAM CG43060 INTRON CG43060
3L	15793827	3L_15793827_SNP [dm3] 3L_15800727_SNP [dm6]	T	A	2.903e^-5	0.765	INTERGENIC
3R	14622504	3R_14622504_SNP [dm3] 3R_18796782_SNP [dm6]	T	G	2.975e^-5	0.765	INTERGENIC
3R	18768619	3R_18768619_SNP [dm3] 3R_22942897_SNP [dm6]	G	C	3.069e^-5	0.765	INTRON klg
2R	10612922	2R_10612922_SNP [dm3] 2R_14725417_SNP [dm6]	G	A	3.086e^-5	0.765	INTERGENIC
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	3.098e^-5	0.765	INTRON CG32982
3L	4483604	3L_4483604_SNP [dm3] 3L_4483604_SNP [dm6]	T	C	3.113e^-5	0.765	SYNONYMOUS_CODING CG11350
3L	1585022	3L_1585022_SNP [dm3] 3L_1585022_SNP [dm6]	C	G	3.193e^-5	0.765	INTRON CG13917
2L	12211482	2L_12211482_SNP [dm3] 2L_12211482_SNP [dm6]	A	C	3.298e^-5	0.765	INTRON aret
3R	24466682	3R_24466682_SNP [dm3] 3R_28640960_SNP [dm6]	G	A	3.394e^-5	0.765	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23749545	3R_23749545_SNP [dm3] 3R_27923823_SNP [dm6]	A	T	3.431e^-5	0.765	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11044181	3L_11044181_INS [dm3] 3L_11051081_INS [dm6]	T	TGCAAT	3.459e^-5	0.765	UPSTREAM CG43693 DOWNSTREAM CR45119 INTRON CG43693
3L	17628889	3L_17628889_SNP [dm3] 3L_17635789_SNP [dm6]	T	C	3.505e^-5	0.765	INTRON CG7497
3L	11119866	3L_11119866_SNP [dm3] 3L_11126766_SNP [dm6]	G	T	3.580e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17628896	3L_17628896_SNP [dm3] 3L_17635796_SNP [dm6]	T	C	3.622e^-5	0.765	INTRON CG7497
X	8151496	X_8151496_SNP [dm3] X_8257463_SNP [dm6]	T	G	3.672e^-5	0.765	INTRON CG1632
2L	2068780	2L_2068780_SNP [dm3] 2L_2068780_SNP [dm6]	A	G	3.684e^-5	0.765	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4771674	X_4771674_SNP [dm3] X_4877641_SNP [dm6]	C	T	3.713e^-5	0.765	DOWNSTREAM CG12681 INTRON CG42594
3R	5867251	3R_5867251_SNP [dm3] 3R_10041529_SNP [dm6]	A	G	3.733e^-5	0.765	INTRON Mical
X	8151421	X_8151421_SNP [dm3] X_8257388_SNP [dm6]	A	T	3.845e^-5	0.765	INTRON CG1632
3L	10699681	3L_10699681_SNP [dm3] 3L_10706581_SNP [dm6]	A	G	3.911e^-5	0.765	INTERGENIC
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	3.919e^-5	0.765	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	3.919e^-5	0.765	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	3.919e^-5	0.765	INTRON axo
X	8151481	X_8151481_SNP [dm3] X_8257448_SNP [dm6]	A	T	3.939e^-5	0.765	INTRON CG1632
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	4.044e^-5	0.765	INTRON axo
3R	27189997	3R_27189997_SNP [dm3] 3R_31364275_SNP [dm6]	C	A	4.092e^-5	0.765	INTRON CG34347
3L	11124419	3L_11124419_SNP [dm3] 3L_11131319_SNP [dm6]	G	T	4.112e^-5	0.765	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	11124420	3L_11124420_SNP [dm3] 3L_11131320_SNP [dm6]	G	A	4.112e^-5	0.765	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3R	5575562	3R_5575562_SNP [dm3] 3R_9749840_SNP [dm6]	C	T	4.116e^-5	0.765	SYNONYMOUS_CODING PpD3
X	18866809	X_18866809_INS [dm3] X_18972776_INS [dm6]	T	TT	4.175e^-5	0.765	INTRON CG43759
3L	22840756	3L_22840756_DEL [dm3] 3L_22847656_DEL [dm6]	GCCTTTGCTTGAAG...	G	4.422e^-5	0.765	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6977078	3L_6977078_SNP [dm3] 3L_6983978_SNP [dm6]	C	T	4.522e^-5	0.765	SYNONYMOUS_CODING CG43439 UTR_3_PRIME CG32388	TF binding site mE1_TFBS_sens
3L	11111607	3L_11111607_SNP [dm3] 3L_11118507_SNP [dm6]	C	T	4.576e^-5	0.765	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12978525	3L_12978525_SNP [dm3] 3L_12985425_SNP [dm6]	C	T	4.626e^-5	0.765	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	4.659e^-5	0.765	INTERGENIC
3L	11117703	3L_11117703_SNP [dm3] 3L_11124603_SNP [dm6]	C	T	4.707e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8151446	X_8151446_SNP [dm3] X_8257413_SNP [dm6]	A	T	4.711e^-5	0.765	INTRON CG1632
X	8151489	X_8151489_SNP [dm3] X_8257456_SNP [dm6]	T	A	4.711e^-5	0.765	INTRON CG1632
X	8151490	X_8151490_INS [dm3] X_8257457_INS [dm6]	T	TC	4.711e^-5	0.765	INTRON CG1632
X	8151495	X_8151495_SNP [dm3] X_8257462_SNP [dm6]	A	C	4.711e^-5	0.765	INTRON CG1632
3R	25962853	3R_25962853_SNP [dm3] 3R_30137131_SNP [dm6]	A	T	4.776e^-5	0.765	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad
3L	19387125	3L_19387125_SNP [dm3] 3L_19394025_SNP [dm6]	A	C	4.785e^-5	0.765	INTRON CG32206
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	4.948e^-5	0.765	INTRON axo
2R	6146983	2R_6146983_SNP [dm3] 2R_10259478_SNP [dm6]	G	C	5.017e^-5	0.765	INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3850948	3L_3850948_SNP [dm3] 3L_3850948_SNP [dm6]	C	A	5.058e^-5	0.765	INTRON Awh
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	5.194e^-5	0.765	INTERGENIC
2L	6809268	2L_6809268_SNP [dm3] 2L_6809268_SNP [dm6]	T	C	5.327e^-5	0.765	INTERGENIC
X	18639418	X_18639418_INS [dm3] X_18745385_INS [dm6]	A	ACCATTTGCAAA...	5.402e^-5	0.765	DOWNSTREAM CG12609 INTERGENIC
3L	18621433	3L_18621433_SNP [dm3] 3L_18628333_SNP [dm6]	T	C	5.435e^-5	0.765	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26409709	3R_26409709_SNP [dm3] 3R_30583987_SNP [dm6]	T	A	5.463e^-5	0.765	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3L	6273685	3L_6273685_SNP [dm3] 3L_6280585_SNP [dm6]	T	A	5.486e^-5	0.765	INTERGENIC
3R	6735148	3R_6735148_SNP [dm3] 3R_10909426_SNP [dm6]	T	C	5.580e^-5	0.765	INTERGENIC
3R	26409669	3R_26409669_SNP [dm3] 3R_30583947_SNP [dm6]	T	C	5.584e^-5	0.765	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409702	3R_26409702_SNP [dm3] 3R_30583980_SNP [dm6]	C	T	5.584e^-5	0.765	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	5.595e^-5	0.765	INTERGENIC
3R	26409735	3R_26409735_SNP [dm3] 3R_30584013_SNP [dm6]	T	C	5.607e^-5	0.765	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
X	8151437	X_8151437_SNP [dm3] X_8257404_SNP [dm6]	A	G	5.708e^-5	0.765	INTRON CG1632
2R	19705604	2R_19705604_SNP [dm3] 2R_23818081_SNP [dm6]	G	A	5.773e^-5	0.765	UTR_5_PRIME CG4797
2L	5884872	2L_5884872_SNP [dm3] 2L_5884872_SNP [dm6]	A	G	5.794e^-5	0.765	UPSTREAM CG43185 & 1 other DOWNSTREAM CG44574 INTERGENIC
3L	11111439	3L_11111439_SNP [dm3] 3L_11118339_SNP [dm6]	G	A	5.824e^-5	0.765	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	1514418	3L_1514418_SNP [dm3] 3L_1514418_SNP [dm6]	T	A	5.896e^-5	0.765	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26409791	3R_26409791_SNP [dm3] 3R_30584069_SNP [dm6]	C	T	5.942e^-5	0.765	UTR_3_PRIME CG9717 UPSTREAM Rpt6R	TF binding site mE1_TFBS_cad
3L	1514433	3L_1514433_SNP [dm3] 3L_1514433_SNP [dm6]	A	C	5.986e^-5	0.765	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10347290	3R_10347290_SNP [dm3] 3R_14521568_SNP [dm6]	A	G	5.994e^-5	0.765	INTRON Pde6 & 1 other
X	14299134	X_14299134_SNP [dm3] X_14405101_SNP [dm6]	C	A	6.040e^-5	0.765	INTRON dpr8
3L	14067879	3L_14067879_SNP [dm3] 3L_14074779_SNP [dm6]	T	C	6.046e^-5	0.765	SPLICE_SITE_REGION Pex1 UPSTREAM btl INTRON Pex1
3L	18540983	3L_18540983_SNP [dm3] 3L_18547883_SNP [dm6]	C	T	6.162e^-5	0.765	INTERGENIC
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	6.265e^-5	0.765	INTRON CG7470
3L	13566900	3L_13566900_SNP [dm3] 3L_13573800_SNP [dm6]	A	G	6.288e^-5	0.765	INTRON bru-3
3R	16067185	3R_16067185_SNP [dm3] 3R_20241463_SNP [dm6]	G	A	6.562e^-5	0.765	INTRON Nlg4
3R	17211173	3R_17211173_SNP [dm3] 3R_21385451_SNP [dm6]	A	T	6.735e^-5	0.765	INTERGENIC	regulatory region REDfly_CRMs
3R	5487637	3R_5487637_SNP [dm3] 3R_9661915_SNP [dm6]	C	T	6.766e^-5	0.765	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16960034	2R_16960034_SNP [dm3] 2R_21072529_SNP [dm6]	T	G	6.811e^-5	0.765	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	2156840	3L_2156840_SNP [dm3] 3L_2156840_SNP [dm6]	G	A	6.853e^-5	0.765	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	6.871e^-5	0.765	INTRON Oamb
X	18425612	X_18425612_DEL [dm3] X_18531579_DEL [dm6]	TAC	T	6.907e^-5	0.765	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	18425617	X_18425617_SNP [dm3] X_18531584_SNP [dm6]	A	G	6.907e^-5	0.765	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	20101503	2R_20101503_SNP [dm3] 2R_24213980_SNP [dm6]	A	G	6.948e^-5	0.765	UTR_3_PRIME CG30419
2R	16847912	2R_16847912_SNP [dm3] 2R_20960407_SNP [dm6]	T	C	7.024e^-5	0.765	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13470157	3L_13470157_DEL [dm3] 3L_13477057_DEL [dm6]	AACCGT	A	7.040e^-5	0.765	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13470164	3L_13470164_SNP [dm3] 3L_13477064_SNP [dm6]	T	A	7.040e^-5	0.765	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8151441	X_8151441_SNP [dm3] X_8257408_SNP [dm6]	T	C	7.053e^-5	0.765	INTRON CG1632
2L	16701667	2L_16701667_SNP [dm3] 2L_16701667_SNP [dm6]	A	G	7.113e^-5	0.765	UPSTREAM CR43669 EXON CR43670	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10431102	2L_10431102_SNP [dm3] 2L_10431102_SNP [dm6]	T	A	7.133e^-5	0.765	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17937594	3L_17937594_SNP [dm3] 3L_17944494_SNP [dm6]	T	C	7.172e^-5	0.765	INTRON CG43174
2R	6146988	2R_6146988_SNP [dm3] 2R_10259483_SNP [dm6]	A	C	7.244e^-5	0.765	INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6147014	2R_6147014_SNP [dm3] 2R_10259509_SNP [dm6]	T	G	7.244e^-5	0.765	SPLICE_SITE_REGION CG12911 INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6147018	2R_6147018_SNP [dm3] 2R_10259513_SNP [dm6]	T	C	7.244e^-5	0.765	SPLICE_SITE_REGION CG12911 INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11116831	3L_11116831_DEL [dm3] 3L_11123731_DEL [dm6]	TAA	T	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116893	3L_11116893_SNP [dm3] 3L_11123793_SNP [dm6]	G	T	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116950	3L_11116950_SNP [dm3] 3L_11123850_SNP [dm6]	G	A	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116951	3L_11116951_SNP [dm3] 3L_11123851_SNP [dm6]	T	A	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116987	3L_11116987_SNP [dm3] 3L_11123887_SNP [dm6]	C	T	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117289	3L_11117289_SNP [dm3] 3L_11124189_SNP [dm6]	C	T	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117298	3L_11117298_SNP [dm3] 3L_11124198_SNP [dm6]	C	A	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117299	3L_11117299_SNP [dm3] 3L_11124199_SNP [dm6]	C	A	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117304	3L_11117304_SNP [dm3] 3L_11124204_SNP [dm6]	C	T	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117308	3L_11117308_SNP [dm3] 3L_11124208_SNP [dm6]	G	A	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117314	3L_11117314_DEL [dm3] 3L_11124214_DEL [dm6]	CACCC	C	7.278e^-5	0.765	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117336	3L_11117336_SNP [dm3] 3L_11124236_SNP [dm6]	T	C	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117358	3L_11117358_INS [dm3] 3L_11124258_INS [dm6]	T	TACCAT	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117417	3L_11117417_SNP [dm3] 3L_11124317_SNP [dm6]	A	T	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117580	3L_11117580_SNP [dm3] 3L_11124480_SNP [dm6]	G	A	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117599	3L_11117599_DEL [dm3] 3L_11124499_DEL [dm6]	ATA	A	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117606	3L_11117606_DEL [dm3] 3L_11124506_DEL [dm6]	ACTTCCGCT	TA	7.278e^-5	0.765	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12978841	3L_12978841_SNP [dm3] 3L_12985741_SNP [dm6]	C	T	7.329e^-5	0.765	INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	10602855	3R_10602855_SNP [dm3] 3R_14777133_SNP [dm6]	T	C	7.362e^-5	0.765	INTRON jvl	TF binding site BDTNP1_TFBS_twi
3L	13277802	3L_13277802_SNP [dm3] 3L_13284702_SNP [dm6]	A	G	7.380e^-5	0.765	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
3L	2570284	3L_2570284_SNP [dm3] 3L_2570284_SNP [dm6]	A	G	7.460e^-5	0.765	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2306130	2L_2306130_SNP [dm3] 2L_2306130_SNP [dm6]	A	C	7.506e^-5	0.765	INTERGENIC
3R	2230698	3R_2230698_SNP [dm3] 3R_6404976_SNP [dm6]	G	A	7.537e^-5	0.765	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18822934	3L_18822934_SNP [dm3] 3L_18829834_SNP [dm6]	T	G	7.547e^-5	0.765	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
2R	8550593	2R_8550593_SNP [dm3] 2R_12663088_SNP [dm6]	C	G	7.626e^-5	0.765	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2L	6680348	2L_6680348_SNP [dm3] 2L_6680348_SNP [dm6]	G	A	7.647e^-5	0.765	SPLICE_SITE_REGION Nhe3 SYNONYMOUS_CODING Nhe3
3L	7188049	3L_7188049_SNP [dm3] 3L_7194949_SNP [dm6]	A	G	7.662e^-5	0.765	INTERGENIC
3R	9761951	3R_9761951_SNP [dm3] 3R_13936229_SNP [dm6]	G	C	7.737e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10430942	2L_10430942_INS [dm3] 2L_10430942_INS [dm6]	A	AA	7.793e^-5	0.766	UPSTREAM TfIIB & 1 other DOWNSTREAM CG5188 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	7.802e^-5	0.766	UPSTREAM CG14247 INTERGENIC
3L	2353091	3L_2353091_SNP [dm3] 3L_2353091_SNP [dm6]	G	C	7.943e^-5	0.772	INTERGENIC
3L	14067907	3L_14067907_SNP [dm3] 3L_14074807_SNP [dm6]	A	G	7.945e^-5	0.772	UPSTREAM btl INTRON Pex1
3L	11122095	3L_11122095_SNP [dm3] 3L_11128995_SNP [dm6]	T	A	8.021e^-5	0.775	UTR_5_PRIME CG42575 UPSTREAM CG42575
2L	15065290	2L_15065290_SNP [dm3] 2L_15065290_SNP [dm6]	A	T	8.133e^-5	0.782	SYNONYMOUS_CODING vig INTRON vas
X	11277568	X_11277568_SNP [dm3] X_11383535_SNP [dm6]	G	A	8.185e^-5	0.783	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
3R	7590496	3R_7590496_SNP [dm3] 3R_11764774_SNP [dm6]	G	A	8.290e^-5	0.787	UPSTREAM Lk6 DOWNSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12542676	2R_12542676_SNP [dm3] 2R_16655171_SNP [dm6]	G	A	8.314e^-5	0.787	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
3L	13097194	3L_13097194_SNP [dm3] 3L_13104094_SNP [dm6]	T	C	8.470e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	10220041	3R_10220041_SNP [dm3] 3R_14394319_SNP [dm6]	A	C	8.512e^-5	0.794	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad
3R	8396319	3R_8396319_SNP [dm3] 3R_12570597_SNP [dm6]	G	A	8.568e^-5	0.794	INTRON Octbeta2R
3R	15322278	3R_15322278_SNP [dm3] 3R_19496556_SNP [dm6]	G	C	8.578e^-5	0.794	INTRON Dys
X	8151488	X_8151488_SNP [dm3] X_8257455_SNP [dm6]	G	T	8.643e^-5	0.794	INTRON CG1632
2L	10431111	2L_10431111_INS [dm3] 2L_10431111_INS [dm6]	A	AA	8.652e^-5	0.794	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2985922	3L_2985922_SNP [dm3] 3L_2985922_SNP [dm6]	G	C	8.928e^-5	0.812	INTERGENIC
3R	10782781	3R_10782781_SNP [dm3] 3R_14957059_SNP [dm6]	T	A	8.936e^-5	0.812	INTERGENIC
3L	1514530	3L_1514530_SNP [dm3] 3L_1514530_SNP [dm6]	A	C	9.247e^-5	0.825	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2L	10431019	2L_10431019_SNP [dm3] 2L_10431019_SNP [dm6]	A	G	9.397e^-5	0.825	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431037	2L_10431037_SNP [dm3] 2L_10431037_SNP [dm6]	A	G	9.397e^-5	0.825	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431047	2L_10431047_SNP [dm3] 2L_10431047_SNP [dm6]	T	A	9.397e^-5	0.825	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10431069	2L_10431069_SNP [dm3] 2L_10431069_SNP [dm6]	G	A	9.397e^-5	0.825	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19372741	2R_19372741_SNP [dm3] 2R_23485218_SNP [dm6]	G	A	9.434e^-5	0.825	SYNONYMOUS_CODING CG43795
3L	10285623	3L_10285623_SNP [dm3] 3L_10292523_SNP [dm6]	G	A	9.459e^-5	0.825	INTERGENIC
3L	11864544	3L_11864544_SNP [dm3] 3L_11871444_SNP [dm6]	A	T	9.475e^-5	0.825	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12065792	3L_12065792_SNP [dm3] 3L_12072692_SNP [dm6]	T	G	9.493e^-5	0.825	INTRON Sema-5c	TF binding site mE1_TFBS_HSA
3L	16387344	3L_16387344_SNP [dm3] 3L_16394244_SNP [dm6]	G	C	9.540e^-5	0.825	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17635885	2R_17635885_SNP [dm3] 2R_21748380_SNP [dm6]	C	G	9.605e^-5	0.826	INTERGENIC
2L	12596720	2L_12596720_SNP [dm3] 2L_12596720_SNP [dm6]	G	A	9.677e^-5	0.826	INTRON nub
3L	12718350	3L_12718350_SNP [dm3] 3L_12725250_SNP [dm6]	A	G	9.681e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19386848	3L_19386848_SNP [dm3] 3L_19393748_SNP [dm6]	G	T	9.727e^-5	0.826	INTRON CG32206
2R	9656866	2R_9656866_SNP [dm3] 2R_13769361_SNP [dm6]	A	G	1.003e^-4	0.843	UPSTREAM Cpr50Ca INTERGENIC
3L	10874912	3L_10874912_SNP [dm3] 3L_10881812_SNP [dm6]	G	A	1.008e^-4	0.843	SYNONYMOUS_CODING CG6409
2L	10431099	2L_10431099_SNP [dm3] 2L_10431099_SNP [dm6]	A	C	1.011e^-4	0.843	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26061019	3R_26061019_SNP [dm3] 3R_30235297_SNP [dm6]	A	T	1.011e^-4	0.843	INTERGENIC
3R	8372968	3R_8372968_SNP [dm3] 3R_12547246_SNP [dm6]	G	T	1.016e^-4	0.843	INTRON Octbeta3R
2R	4969071	2R_4969071_SNP [dm3] 2R_9081566_SNP [dm6]	G	A	1.026e^-4	0.844	SPLICE_SITE_REGION CG8083 UPSTREAM CNT1 INTRON CG8083
2L	12491349	2L_12491349_SNP [dm3] 2L_12491349_SNP [dm6]	A	T	1.037e^-4	0.844	INTRON bun
3L	4815868	3L_4815868_SNP [dm3] 3L_4815868_SNP [dm6]	T	G	1.042e^-4	0.844	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10554637	2R_10554637_SNP [dm3] 2R_14667132_SNP [dm6]	T	C	1.044e^-4	0.844	UPSTREAM CG12860 INTERGENIC
3R	18992709	3R_18992709_SNP [dm3] 3R_23166987_SNP [dm6]	A	T	1.049e^-4	0.844	INTERGENIC
3L	4895812	3L_4895812_SNP [dm3] 3L_4895812_SNP [dm6]	A	G	1.052e^-4	0.844	DOWNSTREAM CG17150 INTERGENIC
2L	2120921	2L_2120921_SNP [dm3] 2L_2120921_SNP [dm6]	G	C	1.055e^-4	0.844	INTERGENIC
3R	4325628	3R_4325628_SNP [dm3] 3R_8499906_SNP [dm6]	T	C	1.066e^-4	0.844	INTERGENIC
X	6525415	X_6525415_SNP [dm3] X_6631382_SNP [dm6]	G	A	1.069e^-4	0.844	INTRON pigs
3R	21498131	3R_21498131_SNP [dm3] 3R_25672409_SNP [dm6]	T	A	1.072e^-4	0.844	INTRON Lgr3
2R	16302297	2R_16302297_SNP [dm3] 2R_20414792_SNP [dm6]	C	T	1.080e^-4	0.844	INTERGENIC
2L	12491435	2L_12491435_SNP [dm3] 2L_12491435_SNP [dm6]	A	T	1.092e^-4	0.844	INTRON bun
3R	19786194	3R_19786194_SNP [dm3] 3R_23960472_SNP [dm6]	C	T	1.094e^-4	0.844	DOWNSTREAM AP-1sigma INTRON AP-1sigma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8172100	X_8172100_SNP [dm3] X_8278067_SNP [dm6]	T	A	1.097e^-4	0.844	UTR_3_PRIME nAChRalpha3
2R	10330559	2R_10330559_SNP [dm3] 2R_14443054_SNP [dm6]	A	G	1.097e^-4	0.844	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	1.104e^-4	0.844	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	1.104e^-4	0.844	INTRON axo
2R	6146981	2R_6146981_INS [dm3] 2R_10259476_INS [dm6]	A	AATCTTAA	1.108e^-4	0.844	INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3084201	3L_3084201_SNP [dm3] 3L_3084201_SNP [dm6]	T	G	1.120e^-4	0.844	INTRON CG11486
3L	18829251	3L_18829251_SNP [dm3] 3L_18836151_SNP [dm6]	T	C	1.120e^-4	0.844	INTRON Indy
3L	7627410	3L_7627410_SNP [dm3] 3L_7634310_SNP [dm6]	T	A	1.122e^-4	0.844	INTRON CG33275
3L	7627523	3L_7627523_SNP [dm3] 3L_7634423_SNP [dm6]	C	T	1.122e^-4	0.844	INTRON CG33275
2L	6680440	2L_6680440_SNP [dm3] 2L_6680440_SNP [dm6]	T	G	1.124e^-4	0.844	NON_SYNONYMOUS_CODING Nhe3
X	3360052	X_3360052_SNP [dm3] X_3466019_SNP [dm6]	T	A	1.132e^-4	0.846	UTR_3_PRIME CG12206 INTRON CR44999
3R	8401121	3R_8401121_SNP [dm3] 3R_12575399_SNP [dm6]	A	G	1.140e^-4	0.847	INTRON Octbeta2R
3L	14244731	3L_14244731_SNP [dm3] 3L_14251631_SNP [dm6]	A	C	1.149e^-4	0.847	INTERGENIC
3L	17634480	3L_17634480_SNP [dm3] 3L_17641380_SNP [dm6]	A	C	1.153e^-4	0.847	INTRON Pep
2R	16934414	2R_16934414_SNP [dm3] 2R_21046909_SNP [dm6]	A	G	1.153e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	18474806	3L_18474806_SNP [dm3] 3L_18481706_SNP [dm6]	T	C	1.158e^-4	0.847	INTERGENIC
3L	1446930	3L_1446930_SNP [dm3] 3L_1446930_SNP [dm6]	C	A	1.162e^-4	0.847	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11112660	3L_11112660_DEL [dm3] 3L_11119560_DEL [dm6]	GA	G	1.166e^-4	0.847	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16960138	2R_16960138_SNP [dm3] 2R_21072633_SNP [dm6]	C	A	1.185e^-4	0.847	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
X	6525422	X_6525422_SNP [dm3] X_6631389_SNP [dm6]	G	T	1.185e^-4	0.847	INTRON pigs
3L	11427311	3L_11427311_SNP [dm3] 3L_11434211_SNP [dm6]	T	C	1.190e^-4	0.847	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1901190	2L_1901190_SNP [dm3] 2L_1901190_SNP [dm6]	G	T	1.195e^-4	0.847	INTRON CG7337
2R	16960035	2R_16960035_SNP [dm3] 2R_21072530_SNP [dm6]	G	T	1.209e^-4	0.847	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2L	13328018	2L_13328018_SNP [dm3] 2L_13328018_SNP [dm6]	C	A	1.212e^-4	0.847	INTRON CG43778
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	1.213e^-4	0.847	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11142546	3L_11142546_SNP [dm3] 3L_11149446_SNP [dm6]	G	A	1.218e^-4	0.847	DOWNSTREAM CG6216 INTRON CG32082
3L	11142679	3L_11142679_SNP [dm3] 3L_11149579_SNP [dm6]	A	G	1.218e^-4	0.847	UTR_3_PRIME CG6216 INTRON CG32082
3L	11142680	3L_11142680_SNP [dm3] 3L_11149580_SNP [dm6]	T	C	1.218e^-4	0.847	UTR_3_PRIME CG6216 INTRON CG32082
3R	16162926	3R_16162926_SNP [dm3] 3R_20337204_SNP [dm6]	T	C	1.221e^-4	0.847	INTERGENIC
3L	4961263	3L_4961263_SNP [dm3] 3L_4961263_SNP [dm6]	C	T	1.225e^-4	0.847	INTRON Con
3L	11118089	3L_11118089_SNP [dm3] 3L_11124989_SNP [dm6]	T	C	1.226e^-4	0.847	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12542618	2R_12542618_SNP [dm3] 2R_16655113_SNP [dm6]	G	T	1.249e^-4	0.857	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
3L	1514448	3L_1514448_SNP [dm3] 3L_1514448_SNP [dm6]	A	G	1.255e^-4	0.857	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18505655	3R_18505655_SNP [dm3] 3R_22679933_SNP [dm6]	T	C	1.276e^-4	0.857	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18505690	3R_18505690_SNP [dm3] 3R_22679968_SNP [dm6]	T	C	1.276e^-4	0.857	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12065794	3L_12065794_SNP [dm3] 3L_12072694_SNP [dm6]	T	A	1.280e^-4	0.857	INTRON Sema-5c	TF binding site mE1_TFBS_HSA
2L	12491401	2L_12491401_SNP [dm3] 2L_12491401_SNP [dm6]	G	A	1.285e^-4	0.857	INTRON bun
2L	8679453	2L_8679453_SNP [dm3] 2L_8679453_SNP [dm6]	C	G	1.289e^-4	0.857	DOWNSTREAM tRNA:CR31889 INTRON CG9287
3R	26748002	3R_26748002_SNP [dm3] 3R_30922280_SNP [dm6]	A	G	1.292e^-4	0.857	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17724457	2R_17724457_SNP [dm3] 2R_21836952_SNP [dm6]	T	A	1.294e^-4	0.857	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
3L	4817494	3L_4817494_SNP [dm3] 3L_4817494_SNP [dm6]	C	T	1.300e^-4	0.857	SYNONYMOUS_CODING Dhc64C
3R	26299019	3R_26299019_SNP [dm3] 3R_30473297_SNP [dm6]	T	C	1.319e^-4	0.857	INTRON PH4alphaEFB
3R	8401138	3R_8401138_SNP [dm3] 3R_12575416_SNP [dm6]	T	A	1.334e^-4	0.857	INTRON Octbeta2R
2R	8159606	2R_8159606_SNP [dm3] 2R_12272101_SNP [dm6]	C	T	1.338e^-4	0.857	INTRON Cam
3R	5574603	3R_5574603_SNP [dm3] 3R_9748881_SNP [dm6]	A	T	1.341e^-4	0.857	INTRON PpD3	TF binding site mE1_TFBS_sens
2R	12666848	2R_12666848_SNP [dm3] 2R_16779343_SNP [dm6]	T	A	1.346e^-4	0.857	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
X	12605145	X_12605145_SNP [dm3] X_12711112_SNP [dm6]	G	T	1.354e^-4	0.857	SYNONYMOUS_CODING Smr
2R	10612887	2R_10612887_SNP [dm3] 2R_14725382_SNP [dm6]	G	A	1.363e^-4	0.857	INTERGENIC
2L	5885402	2L_5885402_SNP [dm3] 2L_5885402_SNP [dm6]	T	A	1.371e^-4	0.857	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
2L	14449693	2L_14449693_SNP [dm3] 2L_14449693_SNP [dm6]	A	C	1.372e^-4	0.857	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14283027	3R_14283027_DEL [dm3] 3R_18457305_DEL [dm6]	TATAT	T	1.375e^-4	0.857	INTRON fru
3R	10919499	3R_10919499_DEL [dm3] 3R_15093777_DEL [dm6]	ATGTA	A	1.379e^-4	0.857	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	11119878	3L_11119878_SNP [dm3] 3L_11126778_SNP [dm6]	T	C	1.386e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15281139	3R_15281139_SNP [dm3] 3R_19455417_SNP [dm6]	T	C	1.388e^-4	0.857	INTRON CG31221
3L	4715229	3L_4715229_SNP [dm3] 3L_4715229_SNP [dm6]	A	T	1.389e^-4	0.857	INTRON RhoGEF64C
2L	5885285	2L_5885285_SNP [dm3] 2L_5885285_SNP [dm6]	G	C	1.407e^-4	0.857	NON_SYNONYMOUS_CODING CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
2L	5885286	2L_5885286_SNP [dm3] 2L_5885286_SNP [dm6]	A	T	1.407e^-4	0.857	NON_SYNONYMOUS_CODING CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
X	3360040	X_3360040_SNP [dm3] X_3466007_SNP [dm6]	C	A	1.412e^-4	0.857	UTR_3_PRIME CG12206 INTRON CR44999
2L	12491293	2L_12491293_SNP [dm3] 2L_12491293_SNP [dm6]	C	A	1.418e^-4	0.857	INTRON bun
X	3963067	X_3963067_SNP [dm3] X_4069034_SNP [dm6]	A	T	1.419e^-4	0.857	INTERGENIC
2L	16658646	2L_16658646_SNP [dm3] 2L_16658646_SNP [dm6]	A	G	1.423e^-4	0.857	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5885434	2L_5885434_SNP [dm3] 2L_5885434_SNP [dm6]	C	G	1.428e^-4	0.857	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
2L	5885435	2L_5885435_SNP [dm3] 2L_5885435_SNP [dm6]	G	A	1.428e^-4	0.857	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3L	3850349	3L_3850349_DEL [dm3] 3L_3850349_DEL [dm6]	CAGA	C	1.431e^-4	0.857	INTRON Awh
X	12626830	X_12626830_SNP [dm3] X_12732797_SNP [dm6]	T	A	1.434e^-4	0.857	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	13575591	3L_13575591_SNP [dm3] 3L_13582491_SNP [dm6]	G	T	1.434e^-4	0.857	INTRON bru-3
2R	17461048	2R_17461048_SNP [dm3] 2R_21573543_SNP [dm6]	G	A	1.438e^-4	0.857	INTRON CG10440
3L	7641997	3L_7641997_SNP [dm3] 3L_7648897_SNP [dm6]	C	A	1.452e^-4	0.857	INTERGENIC
3L	11119051	3L_11119051_SNP [dm3] 3L_11125951_SNP [dm6]	C	T	1.454e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	8550805	2R_8550805_SNP [dm3] 2R_12663300_SNP [dm6]	G	T	1.457e^-4	0.857	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8551178	2R_8551178_SNP [dm3] 2R_12663673_SNP [dm6]	G	A	1.457e^-4	0.857	INTRON nemy	TF binding site mE1_TFBS_cad
2R	8551492	2R_8551492_SNP [dm3] 2R_12663987_SNP [dm6]	C	A	1.457e^-4	0.857	INTRON nemy
2R	8551702	2R_8551702_SNP [dm3] 2R_12664197_SNP [dm6]	A	G	1.457e^-4	0.857	INTRON nemy
3R	15324261	3R_15324261_SNP [dm3] 3R_19498539_SNP [dm6]	T	G	1.464e^-4	0.857	INTRON Dys	TF binding site mE1_TFBS_Trl
3L	17628711	3L_17628711_SNP [dm3] 3L_17635611_SNP [dm6]	C	T	1.480e^-4	0.857	INTRON CG7497
2R	14413500	2R_14413500_SNP [dm3] 2R_18525995_SNP [dm6]	A	G	1.480e^-4	0.857	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
3L	19386849	3L_19386849_SNP [dm3] 3L_19393749_SNP [dm6]	T	C	1.486e^-4	0.857	INTRON CG32206
2R	6801181	2R_6801181_SNP [dm3] 2R_10913676_SNP [dm6]	C	A	1.489e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26409629	3R_26409629_SNP [dm3] 3R_30583907_SNP [dm6]	C	T	1.505e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	14283012	3R_14283012_SNP [dm3] 3R_18457290_SNP [dm6]	A	G	1.508e^-4	0.857	INTRON fru
2R	17158227	2R_17158227_SNP [dm3] 2R_21270722_SNP [dm6]	C	T	1.517e^-4	0.857	INTRON Rgk3
X	3970429	X_3970429_SNP [dm3] X_4076396_SNP [dm6]	A	G	1.521e^-4	0.857	UTR_5_PRIME CG43689
3L	4484437	3L_4484437_SNP [dm3] 3L_4484437_SNP [dm6]	C	G	1.527e^-4	0.857	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10699839	3L_10699839_SNP [dm3] 3L_10706739_SNP [dm6]	T	G	1.528e^-4	0.857	INTERGENIC
2L	8679406	2L_8679406_SNP [dm3] 2L_8679406_SNP [dm6]	A	T	1.529e^-4	0.857	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2L	8679428	2L_8679428_SNP [dm3] 2L_8679428_SNP [dm6]	C	T	1.529e^-4	0.857	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2L	8679441	2L_8679441_SNP [dm3] 2L_8679441_SNP [dm6]	C	G	1.529e^-4	0.857	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2R	16281426	2R_16281426_SNP [dm3] 2R_20393921_SNP [dm6]	G	A	1.538e^-4	0.857	INTERGENIC
2R	16281427	2R_16281427_SNP [dm3] 2R_20393922_SNP [dm6]	C	T	1.538e^-4	0.857	INTERGENIC
2R	16281429	2R_16281429_INS [dm3] 2R_20393924_INS [dm6]	T	TAA	1.543e^-4	0.857	INTERGENIC
2R	16281431	2R_16281431_SNP [dm3] 2R_20393926_SNP [dm6]	G	A	1.543e^-4	0.857	INTERGENIC
3L	21907300	3L_21907300_DEL [dm3] 3L_21914200_DEL [dm6]	TAT	T	1.551e^-4	0.857	INTRON mub	TF binding site mE1_TFBS_inv
2R	5622879	2R_5622879_SNP [dm3] 2R_9735374_SNP [dm6]	G	T	1.561e^-4	0.857	INTRON sqa
3L	496802	3L_496802_SNP [dm3] 3L_496802_SNP [dm6]	A	T	1.564e^-4	0.857	INTRON klar
3L	11024476	3L_11024476_SNP [dm3] 3L_11031376_SNP [dm6]	T	A	1.567e^-4	0.857	INTERGENIC
2L	11149024	2L_11149024_SNP [dm3] 2L_11149024_SNP [dm6]	G	A	1.577e^-4	0.857	UTR_5_PRIME Gyc32E	TF binding site BDTNP1_TFBS_prd
2L	5885405	2L_5885405_SNP [dm3] 2L_5885405_SNP [dm6]	G	T	1.581e^-4	0.857	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3R	23749309	3R_23749309_SNP [dm3] 3R_27923587_SNP [dm6]	A	T	1.583e^-4	0.857	SYNONYMOUS_CODING RpL4 UPSTREAM snoRNA:Or-aca3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12065235	3L_12065235_SNP [dm3] 3L_12072135_SNP [dm6]	G	C	1.585e^-4	0.857	INTRON Sema-5c
3R	26747824	3R_26747824_SNP [dm3] 3R_30922102_SNP [dm6]	A	G	1.601e^-4	0.857	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23411613	3R_23411613_SNP [dm3] 3R_27585891_SNP [dm6]	A	T	1.602e^-4	0.857	UTR_3_PRIME raps DOWNSTREAM CG5639
3R	23748049	3R_23748049_SNP [dm3] 3R_27922327_SNP [dm6]	T	A	1.608e^-4	0.857	UTR_5_PRIME BCAS2 UPSTREAM RpL4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7627425	3L_7627425_SNP [dm3] 3L_7634325_SNP [dm6]	T	C	1.612e^-4	0.857	INTRON CG33275
3L	7627578	3L_7627578_SNP [dm3] 3L_7634478_SNP [dm6]	A	C	1.612e^-4	0.857	INTRON CG33275
3L	7627580	3L_7627580_SNP [dm3] 3L_7634480_SNP [dm6]	C	A	1.612e^-4	0.857	INTRON CG33275
3L	11772972	3L_11772972_SNP [dm3] 3L_11779872_SNP [dm6]	T	C	1.615e^-4	0.857	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11185468	3L_11185468_SNP [dm3] 3L_11192368_SNP [dm6]	T	A	1.629e^-4	0.857	INTRON GlcAT-P
3R	26409635	3R_26409635_SNP [dm3] 3R_30583913_SNP [dm6]	A	C	1.639e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
2R	9764940	2R_9764940_SNP [dm3] 2R_13877435_SNP [dm6]	G	A	1.642e^-4	0.857	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	1.647e^-4	0.857	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3147244	2L_3147244_SNP [dm3] 2L_3147244_SNP [dm6]	G	A	1.647e^-4	0.857	UTR_3_PRIME Mad
2L	3147245	2L_3147245_SNP [dm3] 2L_3147245_SNP [dm6]	A	G	1.647e^-4	0.857	UTR_3_PRIME Mad
3R	27085595	3R_27085595_SNP [dm3] 3R_31259873_SNP [dm6]	T	C	1.648e^-4	0.857	SYNONYMOUS_CODING CG3669 UPSTREAM CG18672
3R	24464008	3R_24464008_SNP [dm3] 3R_28638286_SNP [dm6]	A	G	1.650e^-4	0.857	SYNONYMOUS_CODING CG9988	TF binding site mE1_TFBS_cad
2R	14093832	2R_14093832_SNP [dm3] 2R_18206327_SNP [dm6]	G	C	1.662e^-4	0.857	INTERGENIC
2R	16915212	2R_16915212_SNP [dm3] 2R_21027707_SNP [dm6]	T	A	1.664e^-4	0.857	INTERGENIC
3L	10725604	3L_10725604_SNP [dm3] 3L_10732504_SNP [dm6]	A	G	1.672e^-4	0.857	INTERGENIC
2L	3655732	2L_3655732_SNP [dm3] 2L_3655732_SNP [dm6]	A	C	1.672e^-4	0.857	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18425643	X_18425643_DEL [dm3] X_18531610_DEL [dm6]	ATGTA	A	1.674e^-4	0.857	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	1.693e^-4	0.857	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13488915	3L_13488915_SNP [dm3] 3L_13495815_SNP [dm6]	T	A	1.703e^-4	0.857	SYNONYMOUS_CODING Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7944552	3R_7944552_SNP [dm3] 3R_12118830_SNP [dm6]	A	C	1.707e^-4	0.857	INTERGENIC
3L	7649787	3L_7649787_SNP [dm3] 3L_7656687_SNP [dm6]	G	A	1.714e^-4	0.857	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	11033624	3L_11033624_SNP [dm3] 3L_11040524_SNP [dm6]	A	T	1.729e^-4	0.857	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
3R	16162031	3R_16162031_SNP [dm3] 3R_20336309_SNP [dm6]	G	C	1.733e^-4	0.857	INTERGENIC
3L	14433775	3L_14433775_SNP [dm3] 3L_14440675_SNP [dm6]	T	A	1.736e^-4	0.857	INTRON bbg
3L	11115555	3L_11115555_SNP [dm3] 3L_11122455_SNP [dm6]	G	T	1.740e^-4	0.857	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2582125	3L_2582125_SNP [dm3] 3L_2582125_SNP [dm6]	T	A	1.744e^-4	0.857	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18905029	2R_18905029_SNP [dm3] 2R_23017506_SNP [dm6]	A	T	1.746e^-4	0.857	INTRON twi & 1 other
3L	9309606	3L_9309606_SNP [dm3] 3L_9316506_SNP [dm6]	C	G	1.746e^-4	0.857	INTERGENIC
3R	22563252	3R_22563252_SNP [dm3] 3R_26737530_SNP [dm6]	C	A	1.747e^-4	0.857	UPSTREAM CG14247 INTERGENIC
2L	825216	2L_825216_SNP [dm3] 2L_825216_SNP [dm6]	T	G	1.751e^-4	0.857	SYNONYMOUS_CODING CG3862 UPSTREAM dock DOWNSTREAM CG3662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	11044385	3L_11044385_SNP [dm3] 3L_11051285_SNP [dm6]	T	C	1.774e^-4	0.857	UTR_5_PRIME CG43693 UPSTREAM CG43693 DOWNSTREAM CR45119
3R	27190989	3R_27190989_SNP [dm3] 3R_31365267_SNP [dm6]	T	G	1.783e^-4	0.857	INTRON CG34347
3L	16647148	3L_16647148_SNP [dm3] 3L_16654048_SNP [dm6]	C	T	1.784e^-4	0.857	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	5739333	3R_5739333_SNP [dm3] 3R_9913611_SNP [dm6]	A	T	1.786e^-4	0.857	INTRON Glut4EF	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13549850	3L_13549850_SNP [dm3] 3L_13556750_SNP [dm6]	A	G	1.789e^-4	0.857	INTRON bru-3
3L	8320488	3L_8320488_SNP [dm3] 3L_8327388_SNP [dm6]	A	T	1.791e^-4	0.857	UTR_3_PRIME CG34461 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26748016	3R_26748016_SNP [dm3] 3R_30922294_SNP [dm6]	C	A	1.794e^-4	0.857	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11865144	3L_11865144_SNP [dm3] 3L_11872044_SNP [dm6]	G	T	1.798e^-4	0.857	UPSTREAM CG5906 INTRON CG44837
2R	12967833	2R_12967833_SNP [dm3] 2R_17080328_SNP [dm6]	T	C	1.804e^-4	0.857	INTRON CG30460
3L	2879040	3L_2879040_SNP [dm3] 3L_2879040_SNP [dm6]	A	T	1.815e^-4	0.857	UTR_5_PRIME CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_sens
3L	14067035	3L_14067035_SNP [dm3] 3L_14073935_SNP [dm6]	A	G	1.820e^-4	0.857	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4296467	3R_4296467_SNP [dm3] 3R_8470745_SNP [dm6]	G	A	1.829e^-4	0.857	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
3L	11126385	3L_11126385_SNP [dm3] 3L_11133285_SNP [dm6]	G	T	1.832e^-4	0.857	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	1.840e^-4	0.857	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	1.840e^-4	0.857	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3510268	3L_3510268_SNP [dm3] 3L_3510268_SNP [dm6]	A	C	1.845e^-4	0.857	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	7151483	3R_7151483_SNP [dm3] 3R_11325761_SNP [dm6]	C	A	1.848e^-4	0.857	INTERGENIC
3R	23748242	3R_23748242_SNP [dm3] 3R_27922520_SNP [dm6]	A	T	1.852e^-4	0.857	UPSTREAM RpL4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	15202219	3L_15202219_DEL [dm3] 3L_15209119_DEL [dm6]	ATATATCATACACTGTATTT...	A	1.859e^-4	0.857	DOWNSTREAM CG6888 INTERGENIC
3R	11915258	3R_11915258_SNP [dm3] 3R_16089536_SNP [dm6]	G	A	1.864e^-4	0.857	SYNONYMOUS_CODING Mhcl
2R	4925803	2R_4925803_SNP [dm3] 2R_9038298_SNP [dm6]	G	A	1.864e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17733671	2R_17733671_SNP [dm3] 2R_21846166_SNP [dm6]	G	T	1.870e^-4	0.857	INTERGENIC
2R	17733672	2R_17733672_SNP [dm3] 2R_21846167_SNP [dm6]	G	T	1.870e^-4	0.857	INTERGENIC
2L	7609685	2L_7609685_SNP [dm3] 2L_7609685_SNP [dm6]	G	A	1.873e^-4	0.857	INTRON CG6739
3R	23749495	3R_23749495_SNP [dm3] 3R_27923773_SNP [dm6]	A	T	1.874e^-4	0.857	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13132583	2R_13132583_SNP [dm3] 2R_17245078_SNP [dm6]	G	A	1.875e^-4	0.857	DOWNSTREAM CG18469 INTRON mbl
2L	3942200	2L_3942200_SNP [dm3] 2L_3942200_SNP [dm6]	G	C	1.876e^-4	0.857	INTRON fred
3R	26410955	3R_26410955_SNP [dm3] 3R_30585233_SNP [dm6]	A	G	1.876e^-4	0.857	INTRON CG9717	TF binding site mE1_TFBS_cad
3R	17792676	3R_17792676_SNP [dm3] 3R_21966954_SNP [dm6]	A	G	1.885e^-4	0.857	INTRON Eip93F
3R	7601882	3R_7601882_SNP [dm3] 3R_11776160_SNP [dm6]	G	A	1.895e^-4	0.857	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11112188	3L_11112188_SNP [dm3] 3L_11119088_SNP [dm6]	G	A	1.898e^-4	0.857	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	11120199	3L_11120199_SNP [dm3] 3L_11127099_SNP [dm6]	C	T	1.898e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	10285603	3L_10285603_SNP [dm3] 3L_10292503_SNP [dm6]	G	C	1.902e^-4	0.857	INTERGENIC
2R	17750901	2R_17750901_SNP [dm3] 2R_21863396_SNP [dm6]	C	G	1.916e^-4	0.857	INTERGENIC
3L	19386731	3L_19386731_SNP [dm3] 3L_19393631_SNP [dm6]	C	T	1.918e^-4	0.857	INTRON CG32206
2R	14346354	2R_14346354_SNP [dm3] 2R_18458849_SNP [dm6]	G	A	1.928e^-4	0.857	DOWNSTREAM CG30116 INTRON CG30116
3L	14833497	3L_14833497_SNP [dm3] 3L_14840397_SNP [dm6]	C	A	1.932e^-4	0.857	INTRON CG17839
2R	17752132	2R_17752132_SNP [dm3] 2R_21864627_SNP [dm6]	T	C	1.939e^-4	0.857	DOWNSTREAM comr INTERGENIC
2R	17752140	2R_17752140_SNP [dm3] 2R_21864635_SNP [dm6]	C	T	1.939e^-4	0.857	DOWNSTREAM comr INTERGENIC
3L	2353087	3L_2353087_SNP [dm3] 3L_2353087_SNP [dm6]	T	A	1.940e^-4	0.857	INTERGENIC
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	1.942e^-4	0.857	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17725678	2R_17725678_SNP [dm3] 2R_21838173_SNP [dm6]	G	A	1.942e^-4	0.857	NON_SYNONYMOUS_CODING CG4372
X	18394348	X_18394348_SNP [dm3] X_18500315_SNP [dm6]	T	C	1.948e^-4	0.857	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7188018	3L_7188018_SNP [dm3] 3L_7194918_SNP [dm6]	C	T	1.949e^-4	0.857	INTERGENIC
3L	16648071	3L_16648071_DEL [dm3] 3L_16654971_DEL [dm6]	AT	A	1.957e^-4	0.857	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	27191007	3R_27191007_SNP [dm3] 3R_31365285_SNP [dm6]	A	G	1.958e^-4	0.857	INTRON CG34347
2R	15458911	2R_15458911_DEL [dm3] 2R_19571406_DEL [dm6]	TCAAGTCAACT...	T	1.969e^-4	0.857	INTRON sm
3R	18792411	3R_18792411_SNP [dm3] 3R_22966689_SNP [dm6]	A	G	1.972e^-4	0.857	NON_SYNONYMOUS_CODING Tpl94D
3L	18837863	3L_18837863_SNP [dm3] 3L_18844763_SNP [dm6]	A	G	1.981e^-4	0.857	INTRON Indy
3L	11112363	3L_11112363_SNP [dm3] 3L_11119263_SNP [dm6]	G	A	1.995e^-4	0.857	UTR_5_PRIME fd68A UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26409645	3R_26409645_SNP [dm3] 3R_30583923_SNP [dm6]	T	G	1.998e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26300322	3R_26300322_SNP [dm3] 3R_30474600_SNP [dm6]	C	T	2.000e^-4	0.857	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14201232	2R_14201232_SNP [dm3] 2R_18313727_SNP [dm6]	T	C	2.013e^-4	0.857	INTRON sbb	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	3977220	2L_3977220_SNP [dm3] 2L_3977220_SNP [dm6]	T	C	2.023e^-4	0.857	INTRON fred
X	2709477	X_2709477_SNP [dm3] X_2815444_SNP [dm6]	T	G	2.025e^-4	0.857	INTRON kirre
3L	1446859	3L_1446859_SNP [dm3] 3L_1446859_SNP [dm6]	A	G	2.030e^-4	0.857	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22562985	3R_22562985_SNP [dm3] 3R_26737263_SNP [dm6]	C	A	2.034e^-4	0.857	UPSTREAM CG6403 & 1 other INTERGENIC
3L	17627282	3L_17627282_SNP [dm3] 3L_17634182_SNP [dm6]	T	G	2.037e^-4	0.857	UPSTREAM CR44567 INTRON CG7497
2R	13921721	2R_13921721_SNP [dm3] 2R_18034216_SNP [dm6]	A	G	2.041e^-4	0.857	INTERGENIC
2L	3977222	2L_3977222_SNP [dm3] 2L_3977222_SNP [dm6]	T	A	2.055e^-4	0.857	INTRON fred
3R	25952754	3R_25952754_SNP [dm3] 3R_30127032_SNP [dm6]	T	C	2.055e^-4	0.857	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5820946	2R_5820946_SNP [dm3] 2R_9933441_SNP [dm6]	G	C	2.059e^-4	0.857	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6731922	3R_6731922_SNP [dm3] 3R_10906200_SNP [dm6]	G	A	2.062e^-4	0.857	INTERGENIC	insulator Insulator_Class_II.mE01
3R	27462962	3R_27462962_SNP [dm3] 3R_31637240_SNP [dm6]	A	T	2.091e^-4	0.857	INTRON kek6
3R	6618961	3R_6618961_SNP [dm3] 3R_10793239_SNP [dm6]	C	A	2.098e^-4	0.857	SYNONYMOUS_CODING CG14687 DOWNSTREAM CG14692	TF binding site BDTNP1_TFBS_twi
3R	27189532	3R_27189532_SNP [dm3] 3R_31363810_SNP [dm6]	C	T	2.112e^-4	0.857	INTRON CG34347
3R	14838013	3R_14838013_SNP [dm3] 3R_19012291_SNP [dm6]	T	C	2.112e^-4	0.857	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15166914	2R_15166914_SNP [dm3] 2R_19279409_SNP [dm6]	G	C	2.120e^-4	0.857	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18620559	3L_18620559_SNP [dm3] 3L_18627459_SNP [dm6]	A	C	2.124e^-4	0.857	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3001122	3L_3001122_SNP [dm3] 3L_3001122_SNP [dm6]	A	C	2.127e^-4	0.857	UPSTREAM FMRFaR INTERGENIC
3L	11110294	3L_11110294_SNP [dm3] 3L_11117194_SNP [dm6]	C	G	2.132e^-4	0.857	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11110309	3L_11110309_SNP [dm3] 3L_11117209_SNP [dm6]	T	A	2.132e^-4	0.857	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	6735381	3R_6735381_SNP [dm3] 3R_10909659_SNP [dm6]	T	C	2.132e^-4	0.857	INTERGENIC
3R	22563108	3R_22563108_SNP [dm3] 3R_26737386_SNP [dm6]	C	T	2.134e^-4	0.857	UPSTREAM CG14247 INTERGENIC
3R	26409671	3R_26409671_SNP [dm3] 3R_30583949_SNP [dm6]	A	T	2.143e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409688	3R_26409688_SNP [dm3] 3R_30583966_SNP [dm6]	G	C	2.143e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409690	3R_26409690_SNP [dm3] 3R_30583968_SNP [dm6]	G	A	2.143e^-4	0.857	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	23467722	3R_23467722_SNP [dm3] 3R_27642000_SNP [dm6]	C	T	2.148e^-4	0.857	UTR_3_PRIME tau DOWNSTREAM mir-1001 INTRON tau
3R	6656802	3R_6656802_SNP [dm3] 3R_10831080_SNP [dm6]	A	T	2.163e^-4	0.857	INTRON Cad86C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	16281422	2R_16281422_SNP [dm3] 2R_20393917_SNP [dm6]	C	A	2.165e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12139146	2R_12139146_SNP [dm3] 2R_16251641_SNP [dm6]	G	T	2.167e^-4	0.857	INTRON CngA
3L	10739379	3L_10739379_SNP [dm3] 3L_10746279_SNP [dm6]	A	T	2.180e^-4	0.857	INTERGENIC
2L	6425437	2L_6425437_SNP [dm3] 2L_6425437_SNP [dm6]	A	T	2.183e^-4	0.857	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13870665	3L_13870665_SNP [dm3] 3L_13877565_SNP [dm6]	A	T	2.206e^-4	0.857	INTRON dysc
3R	10967359	3R_10967359_SNP [dm3] 3R_15141637_SNP [dm6]	A	G	2.211e^-4	0.857	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi
3R	18792416	3R_18792416_SNP [dm3] 3R_22966694_SNP [dm6]	T	C	2.215e^-4	0.857	SYNONYMOUS_CODING Tpl94D
2L	8985067	2L_8985067_SNP [dm3] 2L_8985067_SNP [dm6]	A	T	2.224e^-4	0.857	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985088	2L_8985088_SNP [dm3] 2L_8985088_SNP [dm6]	T	C	2.224e^-4	0.857	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985098	2L_8985098_SNP [dm3] 2L_8985098_SNP [dm6]	A	T	2.224e^-4	0.857	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22774238	3L_22774238_SNP [dm3] 3L_22781138_SNP [dm6]	T	C	2.225e^-4	0.857	INTRON SPoCk
2L	2964754	2L_2964754_SNP [dm3] 2L_2964754_SNP [dm6]	G	A	2.235e^-4	0.857	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA
3L	12879490	3L_12879490_SNP [dm3] 3L_12886390_SNP [dm6]	A	G	2.253e^-4	0.857	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
2R	17572634	2R_17572634_SNP [dm3] 2R_21685129_SNP [dm6]	A	G	2.255e^-4	0.857	UPSTREAM CG10306 DOWNSTREAM CG30263 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3L	18620796	3L_18620796_SNP [dm3] 3L_18627696_SNP [dm6]	T	A	2.256e^-4	0.857	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14005649	2L_14005649_SNP [dm3] 2L_14005649_SNP [dm6]	T	C	2.256e^-4	0.857	INTERGENIC
3L	2567656	3L_2567656_SNP [dm3] 3L_2567656_SNP [dm6]	T	C	2.265e^-4	0.857	SYNONYMOUS_CODING msn
3L	11132880	3L_11132880_SNP [dm3] 3L_11139780_SNP [dm6]	T	C	2.271e^-4	0.857	INTRON CG32082
3L	11110275	3L_11110275_DEL [dm3] 3L_11117175_DEL [dm6]	AT	A	2.274e^-4	0.857	SPLICE_SITE_REGION fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	14032536	3R_14032536_SNP [dm3] 3R_18206814_SNP [dm6]	A	G	2.276e^-4	0.857	INTRON CG7985
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	2.277e^-4	0.857	UPSTREAM CG2955 INTERGENIC
3L	3510493	3L_3510493_SNP [dm3] 3L_3510493_SNP [dm6]	T	G	2.278e^-4	0.857	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3L	8447007	3L_8447007_SNP [dm3] 3L_8453907_SNP [dm6]	T	C	2.291e^-4	0.857	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4912342	2L_4912342_SNP [dm3] 2L_4912342_SNP [dm6]	C	G	2.293e^-4	0.857	INTRON hoe1
3R	26410498	3R_26410498_SNP [dm3] 3R_30584776_SNP [dm6]	T	C	2.297e^-4	0.857	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2961353	3L_2961353_SNP [dm3] 3L_2961353_SNP [dm6]	T	C	2.313e^-4	0.857	UPSTREAM Or63a & 1 other INTERGENIC
3R	6732940	3R_6732940_SNP [dm3] 3R_10907218_SNP [dm6]	C	A	2.317e^-4	0.857	INTERGENIC
3R	6734973	3R_6734973_SNP [dm3] 3R_10909251_SNP [dm6]	G	A	2.317e^-4	0.857	INTERGENIC
2L	15462211	2L_15462211_SNP [dm3] 2L_15462211_SNP [dm6]	C	G	2.323e^-4	0.857	INTERGENIC
2R	16446034	2R_16446034_SNP [dm3] 2R_20558529_SNP [dm6]	T	C	2.328e^-4	0.857	SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11124727	3L_11124727_SNP [dm3] 3L_11131627_SNP [dm6]	T	A	2.336e^-4	0.857	DOWNSTREAM CG32074 & 1 other INTRON CG42575
3L	11115534	3L_11115534_SNP [dm3] 3L_11122434_SNP [dm6]	C	T	2.351e^-4	0.857	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16933827	X_16933827_DEL [dm3] X_17039794_DEL [dm6]	CC	C	2.365e^-4	0.857	INTRON CG45002
3L	18831176	3L_18831176_SNP [dm3] 3L_18838076_SNP [dm6]	A	T	2.365e^-4	0.857	INTRON Indy	TF binding site mE1_TFBS_zfh1
3L	18831182	3L_18831182_SNP [dm3] 3L_18838082_SNP [dm6]	C	A	2.365e^-4	0.857	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	6704289	X_6704289_SNP [dm3] X_6810256_SNP [dm6]	G	T	2.373e^-4	0.857	NON_SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18986556	2R_18986556_SNP [dm3] 2R_23099033_SNP [dm6]	A	C	2.384e^-4	0.857	INTERGENIC
3R	9811874	3R_9811874_SNP [dm3] 3R_13986152_SNP [dm6]	G	A	2.393e^-4	0.857	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9812019	3R_9812019_SNP [dm3] 3R_13986297_SNP [dm6]	G	A	2.393e^-4	0.857	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10004195	2R_10004195_SNP [dm3] 2R_14116690_SNP [dm6]	C	A	2.402e^-4	0.857	INTRON Prosap
2L	22211189	2L_22211189_SNP [dm3] 2L_22211189_SNP [dm6]	A	T	2.409e^-4	0.857	INTRON Ir40a
X	19003255	X_19003255_SNP [dm3] X_19109222_SNP [dm6]	T	G	2.410e^-4	0.857	INTERGENIC
3R	6733905	3R_6733905_SNP [dm3] 3R_10908183_SNP [dm6]	C	A	2.410e^-4	0.857	INTERGENIC
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	2.420e^-4	0.857	DOWNSTREAM Mks1 INTERGENIC
2R	4909776	2R_4909776_SNP [dm3] 2R_9022271_SNP [dm6]	A	G	2.421e^-4	0.857	SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2073110	2L_2073110_SNP [dm3] 2L_2073110_SNP [dm6]	G	A	2.425e^-4	0.857	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	2073116	2L_2073116_SNP [dm3] 2L_2073116_SNP [dm6]	A	T	2.425e^-4	0.857	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	2073123	2L_2073123_SNP [dm3] 2L_2073123_SNP [dm6]	T	C	2.425e^-4	0.857	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2R	5690711	2R_5690711_SNP [dm3] 2R_9803206_SNP [dm6]	C	G	2.430e^-4	0.857	INTRON CG1688
3L	2953574	3L_2953574_DEL [dm3] 3L_2953574_DEL [dm6]	TT	T	2.443e^-4	0.857	DOWNSTREAM Shab INTRON Shab
3R	11540013	3R_11540013_SNP [dm3] 3R_15714291_SNP [dm6]	T	C	2.447e^-4	0.857	INTERGENIC
3R	7145386	3R_7145386_SNP [dm3] 3R_11319664_SNP [dm6]	G	T	2.452e^-4	0.857	INTERGENIC
X	19959896	X_19959896_DEL [dm3] X_20065863_DEL [dm6]	TTGAAACTTAATGGTCTTCT...	T	2.462e^-4	0.857	INTERGENIC
X	18864191	X_18864191_SNP [dm3] X_18970158_SNP [dm6]	A	C	2.464e^-4	0.857	INTRON CG43759
3L	7692845	3L_7692845_SNP [dm3] 3L_7699745_SNP [dm6]	A	T	2.465e^-4	0.857	SYNONYMOUS_CODING Ank2 INTRON CG32373
X	6504081	X_6504081_SNP [dm3] X_6610048_SNP [dm6]	C	A	2.468e^-4	0.857	INTRON pigs
2L	12449076	2L_12449076_SNP [dm3] 2L_12449076_SNP [dm6]	T	C	2.481e^-4	0.857	UPSTREAM CG5421 INTRON Oatp33Eb
3R	18903945	3R_18903945_SNP [dm3] 3R_23078223_SNP [dm6]	G	T	2.490e^-4	0.857	INTRON CG13830
3R	2240173	3R_2240173_SNP [dm3] 3R_6414451_SNP [dm6]	T	G	2.499e^-4	0.857	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11117249	3L_11117249_SNP [dm3] 3L_11124149_SNP [dm6]	T	C	2.505e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26833941	3R_26833941_SNP [dm3] 3R_31008219_SNP [dm6]	G	T	2.505e^-4	0.857	INTRON 5-HT7
2L	13728376	2L_13728376_SNP [dm3] 2L_13728376_SNP [dm6]	G	T	2.508e^-4	0.857	INTERGENIC
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	2.510e^-4	0.857	INTRON Gycbeta100B
3R	10528857	3R_10528857_SNP [dm3] 3R_14703135_SNP [dm6]	G	A	2.510e^-4	0.857	SYNONYMOUS_CODING kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13717342	2L_13717342_SNP [dm3] 2L_13717342_SNP [dm6]	C	G	2.513e^-4	0.857	UPSTREAM CG31814 INTERGENIC
2R	16959936	2R_16959936_SNP [dm3] 2R_21072431_SNP [dm6]	A	C	2.523e^-4	0.857	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2L	12661146	2L_12661146_SNP [dm3] 2L_12661146_SNP [dm6]	C	G	2.529e^-4	0.857	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19959887	X_19959887_DEL [dm3] X_20065854_DEL [dm6]	CTACCCA	C	2.534e^-4	0.857	INTERGENIC
3L	15349913	3L_15349913_SNP [dm3] 3L_15356813_SNP [dm6]	G	A	2.536e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21442873	3R_21442873_SNP [dm3] 3R_25617151_SNP [dm6]	A	C	2.540e^-4	0.857	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	4483643	3L_4483643_SNP [dm3] 3L_4483643_SNP [dm6]	C	A	2.548e^-4	0.857	SYNONYMOUS_CODING CG11350
3L	18429401	3L_18429401_SNP [dm3] 3L_18436301_SNP [dm6]	G	C	2.565e^-4	0.857	INTERGENIC
3L	16472634	3L_16472634_SNP [dm3] 3L_16479534_SNP [dm6]	A	G	2.575e^-4	0.857	INTRON CG33158 & 1 other
3L	4026460	3L_4026460_SNP [dm3] 3L_4026460_SNP [dm6]	A	C	2.583e^-4	0.857	UPSTREAM Gr64a & 1 other INTERGENIC
2L	12490616	2L_12490616_SNP [dm3] 2L_12490616_SNP [dm6]	A	T	2.587e^-4	0.857	INTRON bun
3R	5867343	3R_5867343_SNP [dm3] 3R_10041621_SNP [dm6]	T	C	2.587e^-4	0.857	INTRON Mical
3L	18822407	3L_18822407_SNP [dm3] 3L_18829307_SNP [dm6]	G	T	2.590e^-4	0.857	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	11114244	3L_11114244_SNP [dm3] 3L_11121144_SNP [dm6]	T	C	2.594e^-4	0.857	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26417034	3R_26417034_DEL [dm3] 3R_30591312_DEL [dm6]	AATTCGAA	A	2.608e^-4	0.857	INTERGENIC
2L	11149009	2L_11149009_SNP [dm3] 2L_11149009_SNP [dm6]	C	T	2.611e^-4	0.857	UTR_5_PRIME Gyc32E	TF binding site BDTNP1_TFBS_prd
3L	10813863	3L_10813863_SNP [dm3] 3L_10820763_SNP [dm6]	C	T	2.613e^-4	0.857	INTERGENIC
2L	5914949	2L_5914949_SNP [dm3] 2L_5914949_SNP [dm6]	A	T	2.614e^-4	0.857	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
X	18391659	X_18391659_SNP [dm3] X_18497626_SNP [dm6]	T	C	2.616e^-4	0.857	INTRON GalNAc-T2
2L	5466307	2L_5466307_SNP [dm3] 2L_5466307_SNP [dm6]	C	G	2.621e^-4	0.857	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5536448	X_5536448_SNP [dm3] X_5642415_SNP [dm6]	G	C	2.623e^-4	0.857	INTRON CG42492
2R	16281403	2R_16281403_SNP [dm3] 2R_20393898_SNP [dm6]	G	A	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16281404	2R_16281404_SNP [dm3] 2R_20393899_SNP [dm6]	T	C	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281407	2R_16281407_INS [dm3] 2R_20393902_INS [dm6]	T	ATTTG	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281412	2R_16281412_SNP [dm3] 2R_20393907_SNP [dm6]	A	G	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281413	2R_16281413_SNP [dm3] 2R_20393908_SNP [dm6]	T	A	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16281421	2R_16281421_SNP [dm3] 2R_20393916_SNP [dm6]	A	T	2.625e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6735382	3R_6735382_SNP [dm3] 3R_10909660_SNP [dm6]	C	A	2.633e^-4	0.857	INTERGENIC
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	2.638e^-4	0.857	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10275099	2L_10275099_SNP [dm3] 2L_10275099_SNP [dm6]	C	A	2.640e^-4	0.857	INTRON Utx
3L	4715234	3L_4715234_SNP [dm3] 3L_4715234_SNP [dm6]	T	C	2.646e^-4	0.857	INTRON RhoGEF64C
3R	15301227	3R_15301227_SNP [dm3] 3R_19475505_SNP [dm6]	T	G	2.652e^-4	0.857	INTRON Dys	TF binding site mE1_TFBS_inv
2L	10795352	2L_10795352_SNP [dm3] 2L_10795352_SNP [dm6]	C	A	2.654e^-4	0.857	INTRON CG31869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16442079	3R_16442079_SNP [dm3] 3R_20616357_SNP [dm6]	T	A	2.659e^-4	0.857	INTRON CG15923
X	12201906	X_12201906_SNP [dm3] X_12307873_SNP [dm6]	G	A	2.667e^-4	0.857	INTRON Ten-a
3L	16407345	3L_16407345_SNP [dm3] 3L_16414245_SNP [dm6]	T	G	2.670e^-4	0.857	INTRON TMS1	TF binding site mE1_TFBS_HSA
3L	2559800	3L_2559800_SNP [dm3] 3L_2559800_SNP [dm6]	G	A	2.681e^-4	0.857	INTRON msn
3L	12047375	3L_12047375_DEL [dm3] 3L_12054275_DEL [dm6]	AAGTCT	A	2.697e^-4	0.857	INTRON rols	silencer mE1_HDAC_PRE
2L	17569891	2L_17569891_SNP [dm3] 2L_17569891_SNP [dm6]	T	A	2.699e^-4	0.857	INTERGENIC
3L	22850541	3L_22850541_SNP [dm3] 3L_22857441_SNP [dm6]	T	C	2.724e^-4	0.857	INTERGENIC
3R	7145760	3R_7145760_SNP [dm3] 3R_11320038_SNP [dm6]	C	T	2.730e^-4	0.857	INTERGENIC
3L	11735870	3L_11735870_SNP [dm3] 3L_11742770_SNP [dm6]	G	A	2.738e^-4	0.857	INTRON CG6024
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	2.742e^-4	0.857	INTRON Tgi
3L	14244727	3L_14244727_SNP [dm3] 3L_14251627_SNP [dm6]	G	T	2.749e^-4	0.857	INTERGENIC
3R	9806944	3R_9806944_SNP [dm3] 3R_13981222_SNP [dm6]	G	T	2.757e^-4	0.857	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4883982	X_4883982_SNP [dm3] X_4989949_SNP [dm6]	G	C	2.760e^-4	0.857	INTRON CR44833
3L	4976931	3L_4976931_SNP [dm3] 3L_4976931_SNP [dm6]	C	A	2.768e^-4	0.857	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10231878	3L_10231878_SNP [dm3] 3L_10238778_SNP [dm6]	C	T	2.769e^-4	0.857	INTERGENIC
3R	15322229	3R_15322229_SNP [dm3] 3R_19496507_SNP [dm6]	T	C	2.770e^-4	0.857	INTRON Dys
3R	16162971	3R_16162971_SNP [dm3] 3R_20337249_SNP [dm6]	A	T	2.772e^-4	0.857	INTERGENIC
3L	18219252	3L_18219252_SNP [dm3] 3L_18226152_SNP [dm6]	T	C	2.785e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	2.794e^-4	0.857	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19269731	3L_19269731_SNP [dm3] 3L_19276631_SNP [dm6]	C	T	2.794e^-4	0.857	SYNONYMOUS_CODING CG14086
3L	13870646	3L_13870646_DEL [dm3] 3L_13877546_DEL [dm6]	GTGTGAG	G	2.798e^-4	0.857	INTRON dysc
2L	15736384	2L_15736384_SNP [dm3] 2L_15736384_SNP [dm6]	T	A	2.799e^-4	0.857	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15462119	2L_15462119_SNP [dm3] 2L_15462119_SNP [dm6]	G	A	2.823e^-4	0.857	INTERGENIC
2L	10476900	2L_10476900_SNP [dm3] 2L_10476900_SNP [dm6]	T	A	2.830e^-4	0.857	UPSTREAM RluA-2 INTERGENIC
2L	2965147	2L_2965147_SNP [dm3] 2L_2965147_SNP [dm6]	A	G	2.833e^-4	0.857	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
2L	11487080	2L_11487080_SNP [dm3] 2L_11487080_SNP [dm6]	C	T	2.838e^-4	0.857	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6646144	2R_6646144_SNP [dm3] 2R_10758639_SNP [dm6]	G	T	2.842e^-4	0.857	INTRON CG33144
X	20462317	X_20462317_SNP [dm3] X_20591290_SNP [dm6]	G	T	2.844e^-4	0.857	UTR_3_PRIME RunxA
X	20462353	X_20462353_SNP [dm3] X_20591326_SNP [dm6]	C	T	2.844e^-4	0.857	UTR_3_PRIME RunxA
X	16933857	X_16933857_SNP [dm3] X_17039824_SNP [dm6]	A	C	2.846e^-4	0.857	INTRON CG45002
2R	2533622	2R_2533622_SNP [dm3] 2R_6646117_SNP [dm6]	G	C	2.849e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4538004	3L_4538004_SNP [dm3] 3L_4538004_SNP [dm6]	A	G	2.852e^-4	0.857	SYNONYMOUS_CODING CG11353
3R	26407319	3R_26407319_SNP [dm3] 3R_30581597_SNP [dm6]	T	C	2.860e^-4	0.857	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3L	13302747	3L_13302747_SNP [dm3] 3L_13309647_SNP [dm6]	A	G	2.867e^-4	0.857	INTERGENIC
X	13162666	X_13162666_INS [dm3] X_13268633_INS [dm6]	C	CGATACTGCCATC...	2.869e^-4	0.857	INTRON HDAC4
3R	11508246	3R_11508246_SNP [dm3] 3R_15682524_SNP [dm6]	T	C	2.869e^-4	0.857	INTRON pxb	TF binding site mE1_TFBS_HSA
3R	27459406	3R_27459406_SNP [dm3] 3R_31633684_SNP [dm6]	C	T	2.883e^-4	0.857	INTRON kek6
2L	5885437	2L_5885437_SNP [dm3] 2L_5885437_SNP [dm6]	C	A	2.884e^-4	0.857	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3L	12047513	3L_12047513_SNP [dm3] 3L_12054413_SNP [dm6]	G	T	2.896e^-4	0.857	INTRON rols
3R	22562891	3R_22562891_SNP [dm3] 3R_26737169_SNP [dm6]	A	G	2.897e^-4	0.857	UPSTREAM CG6403 & 1 other INTERGENIC
3R	14374322	3R_14374322_SNP [dm3] 3R_18548600_SNP [dm6]	G	C	2.914e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9664267	3R_9664267_INS [dm3] 3R_13838545_INS [dm6]	T	TATT	2.924e^-4	0.857	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11134628	3L_11134628_SNP [dm3] 3L_11141528_SNP [dm6]	C	T	2.926e^-4	0.857	INTRON CG32082
3R	12341283	3R_12341283_DEL [dm3] 3R_16515561_DEL [dm6]	GCGAGAGCAAG...	G	2.927e^-4	0.857	INTRON CG42342
2L	14315551	2L_14315551_SNP [dm3] 2L_14315551_SNP [dm6]	G	T	2.928e^-4	0.857	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14315555	2L_14315555_SNP [dm3] 2L_14315555_SNP [dm6]	G	A	2.928e^-4	0.857	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	12879472	3L_12879472_SNP [dm3] 3L_12886372_SNP [dm6]	A	T	2.930e^-4	0.857	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
2L	9235611	2L_9235611_SNP [dm3] 2L_9235611_SNP [dm6]	C	G	2.940e^-4	0.857	DOWNSTREAM tRNA:CR31885 INTRON tai
3R	17783501	3R_17783501_SNP [dm3] 3R_21957779_SNP [dm6]	A	T	2.944e^-4	0.857	INTRON Eip93F
3R	17088174	3R_17088174_SNP [dm3] 3R_21262452_SNP [dm6]	G	C	2.945e^-4	0.857	NON_SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9150880	2L_9150880_SNP [dm3] 2L_9150880_SNP [dm6]	A	G	2.945e^-4	0.857	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9151431	2L_9151431_SNP [dm3] 2L_9151431_SNP [dm6]	T	C	2.945e^-4	0.857	SYNONYMOUS_CODING CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27203674	3R_27203674_SNP [dm3] 3R_31377952_SNP [dm6]	G	T	2.956e^-4	0.857	INTERGENIC
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	2.958e^-4	0.857	SYNONYMOUS_CODING btv
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	2.958e^-4	0.857	SYNONYMOUS_CODING btv
3L	14244309	3L_14244309_SNP [dm3] 3L_14251209_SNP [dm6]	C	T	2.964e^-4	0.857	INTERGENIC
3L	22840814	3L_22840814_SNP [dm3] 3L_22847714_SNP [dm6]	T	G	2.965e^-4	0.857	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11110380	3L_11110380_SNP [dm3] 3L_11117280_SNP [dm6]	G	A	2.966e^-4	0.857	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	10396489	3L_10396489_INS [dm3] 3L_10403389_INS [dm6]	T	TTA	2.971e^-4	0.857	INTERGENIC
3L	10998618	3L_10998618_SNP [dm3] 3L_11005518_SNP [dm6]	A	G	2.991e^-4	0.857	INTRON klu
3L	9219958	3L_9219958_SNP [dm3] 3L_9226858_SNP [dm6]	A	G	2.999e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11112611	3L_11112611_INS [dm3] 3L_11119511_INS [dm6]	T	TT	3.003e^-4	0.857	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9644678	3L_9644678_SNP [dm3] 3L_9651578_SNP [dm6]	T	A	3.008e^-4	0.857	INTRON fry & 1 other
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	3.011e^-4	0.857	INTRON bol
2R	17116159	2R_17116159_SNP [dm3] 2R_21228654_SNP [dm6]	A	T	3.018e^-4	0.857	INTRON ASPP
2R	17116163	2R_17116163_SNP [dm3] 2R_21228658_SNP [dm6]	G	A	3.018e^-4	0.857	INTRON ASPP
2R	17116164	2R_17116164_SNP [dm3] 2R_21228659_SNP [dm6]	T	C	3.018e^-4	0.857	INTRON ASPP
3L	11133602	3L_11133602_SNP [dm3] 3L_11140502_SNP [dm6]	G	T	3.023e^-4	0.857	INTRON CG32082
X	18389071	X_18389071_SNP [dm3] X_18495038_SNP [dm6]	T	C	3.024e^-4	0.857	UPSTREAM CG15043 DOWNSTREAM GalNAc-T2 & 1 other INTERGENIC
3L	7093540	3L_7093540_SNP [dm3] 3L_7100440_SNP [dm6]	G	A	3.025e^-4	0.857	INTRON form3
2R	16991507	2R_16991507_SNP [dm3] 2R_21104002_SNP [dm6]	A	C	3.026e^-4	0.857	INTRON ktub	regulatory region REDfly_CRMs
2L	6911156	2L_6911156_SNP [dm3] 2L_6911156_SNP [dm6]	G	T	3.027e^-4	0.857	UTR_3_PRIME Rat1 & 1 other DOWNSTREAM Wee1 & 1 other
3L	16248509	3L_16248509_SNP [dm3] 3L_16255409_SNP [dm6]	C	A	3.028e^-4	0.857	DOWNSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6732545	3R_6732545_SNP [dm3] 3R_10906823_SNP [dm6]	T	A	3.031e^-4	0.857	INTERGENIC
2L	12491095	2L_12491095_SNP [dm3] 2L_12491095_SNP [dm6]	A	G	3.031e^-4	0.857	INTRON bun
3L	11883868	3L_11883868_SNP [dm3] 3L_11890768_SNP [dm6]	G	T	3.037e^-4	0.857	INTRON CG44837
X	5383439	X_5383439_SNP [dm3] X_5489406_SNP [dm6]	A	T	3.047e^-4	0.857	INTRON SPR
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	3.054e^-4	0.857	INTRON CG1688
3R	17757810	3R_17757810_SNP [dm3] 3R_21932088_SNP [dm6]	A	G	3.057e^-4	0.857	INTERGENIC
2R	17514204	2R_17514204_SNP [dm3] 2R_21626699_SNP [dm6]	T	A	3.059e^-4	0.857	SYNONYMOUS_CODING mahj
3R	27256082	3R_27256082_SNP [dm3] 3R_31430360_SNP [dm6]	G	C	3.059e^-4	0.857	INTRON Gprk2	TF binding site mE1_TFBS_chinmo
3L	16472692	3L_16472692_SNP [dm3] 3L_16479592_SNP [dm6]	G	A	3.065e^-4	0.857	INTRON CG33158 & 1 other
3L	11114364	3L_11114364_SNP [dm3] 3L_11121264_SNP [dm6]	A	G	3.068e^-4	0.857	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16701647	2L_16701647_SNP [dm3] 2L_16701647_SNP [dm6]	G	A	3.069e^-4	0.857	UPSTREAM CR43669 EXON CR43670	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2619287	2R_2619287_SNP [dm3] 2R_6731782_SNP [dm6]	G	T	3.071e^-4	0.857	INTRON l_2_01289
3L	8145296	3L_8145296_SNP [dm3] 3L_8152196_SNP [dm6]	G	A	3.073e^-4	0.857	UPSTREAM CG13676 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4925748	2R_4925748_SNP [dm3] 2R_9038243_SNP [dm6]	G	T	3.074e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3070552	3L_3070552_SNP [dm3] 3L_3070552_SNP [dm6]	T	C	3.078e^-4	0.857	UTR_5_PRIME CG32486 UPSTREAM CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3503296	3L_3503296_SNP [dm3] 3L_3503296_SNP [dm6]	T	A	3.082e^-4	0.857	INTRON CG42324
3R	17671165	3R_17671165_SNP [dm3] 3R_21845443_SNP [dm6]	T	A	3.085e^-4	0.857	UPSTREAM CR44087 & 1 other DOWNSTREAM Gr93d INTERGENIC
2R	16003639	2R_16003639_SNP [dm3] 2R_20116134_SNP [dm6]	T	C	3.092e^-4	0.857	UTR_3_PRIME 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11117280	3L_11117280_SNP [dm3] 3L_11124180_SNP [dm6]	G	T	3.096e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23039608	3R_23039608_SNP [dm3] 3R_27213886_SNP [dm6]	A	G	3.121e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26391748	3R_26391748_SNP [dm3] 3R_30566026_SNP [dm6]	G	C	3.124e^-4	0.857	INTRON tmod
3R	9663877	3R_9663877_SNP [dm3] 3R_13838155_SNP [dm6]	G	A	3.136e^-4	0.857	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5601142	2L_5601142_SNP [dm3] 2L_5601142_SNP [dm6]	A	G	3.139e^-4	0.857	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15338563	3R_15338563_SNP [dm3] 3R_19512841_SNP [dm6]	T	G	3.139e^-4	0.857	INTRON Dys
3R	9663863	3R_9663863_SNP [dm3] 3R_13838141_SNP [dm6]	G	C	3.149e^-4	0.857	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13277124	3L_13277124_SNP [dm3] 3L_13284024_SNP [dm6]	A	G	3.158e^-4	0.857	DOWNSTREAM CR43146 INTRON CR43913
2R	4139092	2R_4139092_SNP [dm3] 2R_8251587_SNP [dm6]	T	A	3.164e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	11276278	X_11276278_DEL [dm3] X_11382245_DEL [dm6]	CC	C	3.176e^-4	0.857	INTRON dlg1
X	11276285	X_11276285_SNP [dm3] X_11382252_SNP [dm6]	A	C	3.176e^-4	0.857	INTRON dlg1
3L	11126770	3L_11126770_SNP [dm3] 3L_11133670_SNP [dm6]	C	T	3.178e^-4	0.857	SYNONYMOUS_CODING CG42575	TF binding site mE1_TFBS_cad
2L	17569915	2L_17569915_SNP [dm3] 2L_17569915_SNP [dm6]	A	C	3.181e^-4	0.857	INTERGENIC
2R	8159583	2R_8159583_SNP [dm3] 2R_12272078_SNP [dm6]	T	A	3.196e^-4	0.857	INTRON Cam
3R	5882742	3R_5882742_SNP [dm3] 3R_10057020_SNP [dm6]	C	T	3.199e^-4	0.857	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26865548	3R_26865548_SNP [dm3] 3R_31039826_SNP [dm6]	G	T	3.204e^-4	0.857	UTR_5_PRIME CanA1 INTRON CanA1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20746093	2R_20746093_SNP [dm3] 2R_24858570_SNP [dm6]	G	A	3.204e^-4	0.857	UPSTREAM CR44829 INTERGENIC	TF binding site mE1_TFBS_sens
2L	2072512	2L_2072512_SNP [dm3] 2L_2072512_SNP [dm6]	C	G	3.212e^-4	0.857	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3L	4977060	3L_4977060_SNP [dm3] 3L_4977060_SNP [dm6]	A	G	3.213e^-4	0.857	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2069395	2L_2069395_SNP [dm3] 2L_2069395_SNP [dm6]	T	C	3.214e^-4	0.857	INTRON dpr3
2L	2069397	2L_2069397_SNP [dm3] 2L_2069397_SNP [dm6]	C	T	3.214e^-4	0.857	INTRON dpr3
2L	17702665	2L_17702665_SNP [dm3] 2L_17702665_SNP [dm6]	T	A	3.222e^-4	0.857	INTRON CadN	TF binding site mE1_TFBS_HSA
2L	17702691	2L_17702691_SNP [dm3] 2L_17702691_SNP [dm6]	C	G	3.222e^-4	0.857	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17702702	2L_17702702_SNP [dm3] 2L_17702702_SNP [dm6]	T	C	3.222e^-4	0.857	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1540065	3L_1540065_SNP [dm3] 3L_1540065_SNP [dm6]	T	C	3.228e^-4	0.857	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12520572	2R_12520572_SNP [dm3] 2R_16633067_SNP [dm6]	T	A	3.230e^-4	0.857	INTRON Alk	TF binding site mE1_TFBS_cad
3L	11111423	3L_11111423_SNP [dm3] 3L_11118323_SNP [dm6]	A	G	3.231e^-4	0.857	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	11117038	3L_11117038_SNP [dm3] 3L_11123938_SNP [dm6]	T	A	3.238e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117246	3L_11117246_SNP [dm3] 3L_11124146_SNP [dm6]	C	T	3.238e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117286	3L_11117286_SNP [dm3] 3L_11124186_SNP [dm6]	G	T	3.238e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6906764	2L_6906764_SNP [dm3] 2L_6906764_SNP [dm6]	A	C	3.239e^-4	0.857	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
3R	18505657	3R_18505657_SNP [dm3] 3R_22679935_SNP [dm6]	G	A	3.256e^-4	0.857	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9500719	3R_9500719_SNP [dm3] 3R_13674997_SNP [dm6]	A	G	3.257e^-4	0.857	UPSTREAM Task6 DOWNSTREAM CG9588 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Trl
2R	9892546	2R_9892546_SNP [dm3] 2R_14005041_SNP [dm6]	A	G	3.270e^-4	0.857	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9892582	2R_9892582_SNP [dm3] 2R_14005077_SNP [dm6]	A	G	3.270e^-4	0.857	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9892601	2R_9892601_SNP [dm3] 2R_14005096_SNP [dm6]	A	G	3.270e^-4	0.857	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9892610	2R_9892610_SNP [dm3] 2R_14005105_SNP [dm6]	G	A	3.270e^-4	0.857	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	3.274e^-4	0.857	UTR_5_PRIME CG43174
3L	12465453	3L_12465453_SNP [dm3] 3L_12472353_SNP [dm6]	A	C	3.277e^-4	0.857	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	4252880	3L_4252880_SNP [dm3] 3L_4252880_SNP [dm6]	G	T	3.280e^-4	0.857	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	5005553	2R_5005553_SNP [dm3] 2R_9118048_SNP [dm6]	T	G	3.283e^-4	0.857	SYNONYMOUS_CODING Su_var_2-10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13488969	3L_13488969_SNP [dm3] 3L_13495869_SNP [dm6]	T	A	3.283e^-4	0.857	SYNONYMOUS_CODING Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16868190	3L_16868190_SNP [dm3] 3L_16875090_SNP [dm6]	T	A	3.286e^-4	0.857	INTRON Lmpt
X	13162510	X_13162510_SNP [dm3] X_13268477_SNP [dm6]	A	C	3.290e^-4	0.857	INTRON HDAC4
X	13162512	X_13162512_SNP [dm3] X_13268479_SNP [dm6]	C	A	3.290e^-4	0.857	INTRON HDAC4
3L	1849150	3L_1849150_SNP [dm3] 3L_1849150_SNP [dm6]	T	C	3.296e^-4	0.857	INTERGENIC
3R	25600904	3R_25600904_SNP [dm3] 3R_29775182_SNP [dm6]	A	T	3.303e^-4	0.857	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25600986	3R_25600986_SNP [dm3] 3R_29775264_SNP [dm6]	C	T	3.303e^-4	0.857	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26407412	3R_26407412_SNP [dm3] 3R_30581690_SNP [dm6]	T	C	3.303e^-4	0.857	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	3.317e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10948172	3R_10948172_SNP [dm3] 3R_15122450_SNP [dm6]	C	T	3.319e^-4	0.857	INTRON CG42788
3L	7097325	3L_7097325_SNP [dm3] 3L_7104225_SNP [dm6]	A	G	3.323e^-4	0.857	INTRON form3
2R	10182146	2R_10182146_SNP [dm3] 2R_14294641_SNP [dm6]	T	C	3.326e^-4	0.857	UTR_3_PRIME Ih INTRON Ih
3R	19806727	3R_19806727_INS [dm3] 3R_23981005_INS [dm6]	A	AGTAAAAACTTAAA...	3.327e^-4	0.857	DOWNSTREAM CG31140 INTRON CG31140
3L	2647124	3L_2647124_SNP [dm3] 3L_2647124_SNP [dm6]	C	G	3.327e^-4	0.857	UTR_3_PRIME CG1143 UPSTREAM CG1246 DOWNSTREAM CG1143
3L	17975464	3L_17975464_SNP [dm3] 3L_17982364_SNP [dm6]	G	A	3.331e^-4	0.857	INTRON Eip75B
3L	13053875	3L_13053875_SNP [dm3] 3L_13060775_SNP [dm6]	C	G	3.338e^-4	0.857	NON_SYNONYMOUS_CODING CG14115	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26410771	3R_26410771_SNP [dm3] 3R_30585049_SNP [dm6]	G	A	3.343e^-4	0.857	INTRON CG9717	TF binding site mE1_TFBS_cad
3L	11116915	3L_11116915_SNP [dm3] 3L_11123815_SNP [dm6]	T	C	3.347e^-4	0.857	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9291467	3L_9291467_SNP [dm3] 3L_9298367_SNP [dm6]	A	T	3.352e^-4	0.857	INTERGENIC
3R	8502732	3R_8502732_SNP [dm3] 3R_12677010_SNP [dm6]	C	A	3.355e^-4	0.857	SYNONYMOUS_CODING mbo UPSTREAM CG43630 DOWNSTREAM CG6188	TF binding site mE1_TFBS_cad
3R	26415365	3R_26415365_SNP [dm3] 3R_30589643_SNP [dm6]	C	A	3.358e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10182276	2R_10182276_SNP [dm3] 2R_14294771_SNP [dm6]	A	G	3.359e^-4	0.857	UTR_3_PRIME Ih INTRON Ih
3R	19806124	3R_19806124_SNP [dm3] 3R_23980402_SNP [dm6]	C	A	3.360e^-4	0.857	INTRON CG31140
2L	16375537	2L_16375537_SNP [dm3] 2L_16375537_SNP [dm6]	C	A	3.361e^-4	0.857	INTERGENIC
3R	18148335	3R_18148335_SNP [dm3] 3R_22322613_SNP [dm6]	C	T	3.364e^-4	0.857	INTRON CG34377
X	2709528	X_2709528_SNP [dm3] X_2815495_SNP [dm6]	A	C	3.378e^-4	0.857	INTRON kirre
3R	7589015	3R_7589015_SNP [dm3] 3R_11763293_SNP [dm6]	A	G	3.395e^-4	0.857	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	20763416	2L_20763416_SNP [dm3] 2L_20763416_SNP [dm6]	A	G	3.396e^-4	0.857	INTRON dia
3R	8342688	3R_8342688_SNP [dm3] 3R_12516966_SNP [dm6]	A	C	3.403e^-4	0.857	NON_SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27189731	3R_27189731_SNP [dm3] 3R_31364009_SNP [dm6]	A	G	3.404e^-4	0.857	INTRON CG34347
3L	13872978	3L_13872978_SNP [dm3] 3L_13879878_SNP [dm6]	G	T	3.405e^-4	0.857	INTRON dysc & 1 other
3L	15774079	3L_15774079_SNP [dm3] 3L_15780979_SNP [dm6]	G	C	3.410e^-4	0.857	INTERGENIC
3L	12047516	3L_12047516_SNP [dm3] 3L_12054416_SNP [dm6]	A	G	3.431e^-4	0.857	INTRON rols
3R	23557841	3R_23557841_SNP [dm3] 3R_27732119_SNP [dm6]	G	A	3.434e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12465487	3L_12465487_SNP [dm3] 3L_12472387_SNP [dm6]	C	G	3.437e^-4	0.857	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465505	3L_12465505_SNP [dm3] 3L_12472405_SNP [dm6]	G	A	3.437e^-4	0.857	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465583	3L_12465583_SNP [dm3] 3L_12472483_SNP [dm6]	A	C	3.437e^-4	0.857	INTRON CG10616
3L	12465816	3L_12465816_SNP [dm3] 3L_12472716_SNP [dm6]	G	A	3.437e^-4	0.857	SYNONYMOUS_CODING CG10616
X	4895218	X_4895218_DEL [dm3] X_5001185_DEL [dm6]	ATATAGAAATA...	A	3.442e^-4	0.857	INTRON CR44833	regulatory region REDfly_CRMs
2R	16985009	2R_16985009_DEL [dm3] 2R_21097504_DEL [dm6]	TT	T	3.443e^-4	0.857	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11132823	3L_11132823_DEL [dm3] 3L_11139723_DEL [dm6]	AA	A	3.447e^-4	0.857	INTRON CG32082
2L	3655872	2L_3655872_SNP [dm3] 2L_3655872_SNP [dm6]	A	C	3.450e^-4	0.857	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24541496	3R_24541496_SNP [dm3] 3R_28715774_SNP [dm6]	A	C	3.451e^-4	0.857	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10113014	3L_10113014_SNP [dm3] 3L_10119914_SNP [dm6]	C	A	3.452e^-4	0.857	INTRON dpr6
2L	5866536	2L_5866536_SNP [dm3] 2L_5866536_SNP [dm6]	A	G	3.453e^-4	0.857	INTRON rau	TF binding site BDTNP1_TFBS_da
3L	4815483	3L_4815483_SNP [dm3] 3L_4815483_SNP [dm6]	G	T	3.455e^-4	0.857	INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12868111	2R_12868111_SNP [dm3] 2R_16980606_SNP [dm6]	A	G	3.456e^-4	0.857	INTRON Cbp53E
2R	12868123	2R_12868123_SNP [dm3] 2R_16980618_SNP [dm6]	G	C	3.456e^-4	0.857	INTRON Cbp53E
3R	15421266	3R_15421266_SNP [dm3] 3R_19595544_SNP [dm6]	A	G	3.463e^-4	0.857	UTR_3_PRIME Dys DOWNSTREAM Dys
3R	27251753	3R_27251753_SNP [dm3] 3R_31426031_SNP [dm6]	G	T	3.470e^-4	0.857	INTRON Gprk2
3R	27351338	3R_27351338_SNP [dm3] 3R_31525616_SNP [dm6]	T	C	3.470e^-4	0.857	INTERGENIC
2L	15032489	2L_15032489_SNP [dm3] 2L_15032489_SNP [dm6]	C	T	3.471e^-4	0.857	UPSTREAM CG31832 INTRON GABA-B-R1
2L	15032490	2L_15032490_SNP [dm3] 2L_15032490_SNP [dm6]	T	G	3.471e^-4	0.857	UPSTREAM CG31832 INTRON GABA-B-R1
3L	16647174	3L_16647174_INS [dm3] 3L_16654074_INS [dm6]	A	AC	3.476e^-4	0.857	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	16647177	3L_16647177_MNP [dm3] 3L_16654077_MNP [dm6]	TGT	AAG	3.476e^-4	0.857	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	13470165	3L_13470165_SNP [dm3] 3L_13477065_SNP [dm6]	T	G	3.476e^-4	0.857	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11120080	3L_11120080_SNP [dm3] 3L_11126980_SNP [dm6]	T	A	3.485e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	6977095	3L_6977095_SNP [dm3] 3L_6983995_SNP [dm6]	G	T	3.486e^-4	0.857	NON_SYNONYMOUS_CODING CG43439 UTR_3_PRIME CG32388	TF binding site mE1_TFBS_sens
3L	7148152	3L_7148152_SNP [dm3] 3L_7155052_SNP [dm6]	C	T	3.487e^-4	0.857	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11110336	3L_11110336_SNP [dm3] 3L_11117236_SNP [dm6]	T	A	3.488e^-4	0.857	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	18976223	2R_18976223_SNP [dm3] 2R_23088700_SNP [dm6]	T	C	3.494e^-4	0.857	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20430038	X_20430038_INS [dm3] X_20559011_INS [dm6]	C	CAAGCATGTAGCATGCTCAC...	3.503e^-4	0.857	INTRON RunxB
3L	17625016	3L_17625016_SNP [dm3] 3L_17631916_SNP [dm6]	C	A	3.507e^-4	0.857	DOWNSTREAM CG7510 EXON CR44566
3L	17625018	3L_17625018_SNP [dm3] 3L_17631918_SNP [dm6]	T	C	3.507e^-4	0.857	DOWNSTREAM CG7510 EXON CR44566
3L	17626903	3L_17626903_SNP [dm3] 3L_17633803_SNP [dm6]	C	T	3.507e^-4	0.857	NON_SYNONYMOUS_CODING CG7497 UPSTREAM CR44567
3R	6729621	3R_6729621_SNP [dm3] 3R_10903899_SNP [dm6]	A	T	3.509e^-4	0.857	INTERGENIC
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	3.509e^-4	0.857	INTRON form3
3R	5575805	3R_5575805_SNP [dm3] 3R_9750083_SNP [dm6]	G	A	3.524e^-4	0.857	SYNONYMOUS_CODING PpD3
3L	15306594	3L_15306594_SNP [dm3] 3L_15313494_SNP [dm6]	T	A	3.534e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10481846	2L_10481846_SNP [dm3] 2L_10481846_SNP [dm6]	T	C	3.542e^-4	0.857	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
2L	5465730	2L_5465730_SNP [dm3] 2L_5465730_SNP [dm6]	G	T	3.542e^-4	0.857	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	5465818	2L_5465818_INS [dm3] 2L_5465818_INS [dm6]	T	TTTAAGCACTAGT...	3.542e^-4	0.857	INTRON mid	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3215994	X_3215994_SNP [dm3] X_3321961_SNP [dm6]	A	T	3.544e^-4	0.857	INTRON CR44886 & 1 other
X	13642764	X_13642764_INS [dm3] X_13748731_INS [dm6]	T	TATTACGTTATT...	3.547e^-4	0.857	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13642836	X_13642836_SNP [dm3] X_13748803_SNP [dm6]	T	A	3.547e^-4	0.857	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1100667	3R_1100667_SNP [dm3] 3R_5274945_SNP [dm6]	T	G	3.548e^-4	0.857	DOWNSTREAM CG31538 INTRON mtd
3L	9960635	3L_9960635_SNP [dm3] 3L_9967535_SNP [dm6]	A	G	3.550e^-4	0.857	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site mE1_TFBS_cad
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	3.556e^-4	0.857	INTRON CG32206
3L	18817791	3L_18817791_SNP [dm3] 3L_18824691_SNP [dm6]	T	A	3.561e^-4	0.857	INTRON Cat
3L	15748782	3L_15748782_SNP [dm3] 3L_15755682_SNP [dm6]	T	G	3.570e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15099928	X_15099928_SNP [dm3] X_15205895_SNP [dm6]	G	T	3.574e^-4	0.857	NON_SYNONYMOUS_CODING CG32588
3L	2548760	3L_2548760_SNP [dm3] 3L_2548760_SNP [dm6]	G	A	3.578e^-4	0.857	INTRON Spn
3L	12043942	3L_12043942_SNP [dm3] 3L_12050842_SNP [dm6]	A	G	3.596e^-4	0.857	INTRON rols
3L	16232919	3L_16232919_SNP [dm3] 3L_16239819_SNP [dm6]	C	A	3.602e^-4	0.857	DOWNSTREAM l_3_72Dr INTERGENIC
3L	19387442	3L_19387442_SNP [dm3] 3L_19394342_SNP [dm6]	G	A	3.611e^-4	0.857	INTRON CG32206
3R	27163978	3R_27163978_SNP [dm3] 3R_31338256_SNP [dm6]	A	C	3.626e^-4	0.857	INTRON CG34347
3L	14068415	3L_14068415_SNP [dm3] 3L_14075315_SNP [dm6]	T	C	3.627e^-4	0.857	SYNONYMOUS_CODING Pex1 UPSTREAM btl
2L	4342653	2L_4342653_SNP [dm3] 2L_4342653_SNP [dm6]	G	T	3.644e^-4	0.857	SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13486706	3L_13486706_SNP [dm3] 3L_13493606_SNP [dm6]	A	G	3.654e^-4	0.857	INTRON Tgi
3L	12047520	3L_12047520_SNP [dm3] 3L_12054420_SNP [dm6]	C	T	3.660e^-4	0.857	INTRON rols
3L	7189764	3L_7189764_SNP [dm3] 3L_7196664_SNP [dm6]	C	T	3.663e^-4	0.857	INTERGENIC
2R	15442204	2R_15442204_SNP [dm3] 2R_19554699_SNP [dm6]	C	T	3.665e^-4	0.857	INTRON sm
X	20029840	X_20029840_SNP [dm3] X_20135807_SNP [dm6]	G	C	3.677e^-4	0.857	INTRON CG15322	TF binding site mE1_TFBS_chinmo
3L	17628944	3L_17628944_SNP [dm3] 3L_17635844_SNP [dm6]	A	G	3.680e^-4	0.857	INTRON CG7497
3L	4918673	3L_4918673_SNP [dm3] 3L_4918673_SNP [dm6]	A	C	3.688e^-4	0.857	SYNONYMOUS_CODING Rh50
2L	16337862	2L_16337862_SNP [dm3] 2L_16337862_SNP [dm6]	G	A	3.697e^-4	0.857	UTR_5_PRIME CG31817 DOWNSTREAM CG42266
3L	11132888	3L_11132888_SNP [dm3] 3L_11139788_SNP [dm6]	G	A	3.697e^-4	0.857	INTRON CG32082
3L	11132894	3L_11132894_SNP [dm3] 3L_11139794_SNP [dm6]	A	G	3.697e^-4	0.857	INTRON CG32082
X	4895189	X_4895189_SNP [dm3] X_5001156_SNP [dm6]	C	A	3.698e^-4	0.857	INTRON CR44833	regulatory region REDfly_CRMs
X	4895205	X_4895205_SNP [dm3] X_5001172_SNP [dm6]	G	A	3.698e^-4	0.857	INTRON CR44833	regulatory region REDfly_CRMs
X	4895215	X_4895215_SNP [dm3] X_5001182_SNP [dm6]	A	G	3.698e^-4	0.857	INTRON CR44833	regulatory region REDfly_CRMs
2R	1674113	2R_1674113_INS [dm3] 2R_5786608_INS [dm6]	A	TAG	3.700e^-4	0.857	INTERGENIC
2L	5740823	2L_5740823_SNP [dm3] 2L_5740823_SNP [dm6]	A	G	3.711e^-4	0.857	UTR_5_PRIME CG11147 INTRON CG11030
3L	19387043	3L_19387043_SNP [dm3] 3L_19393943_SNP [dm6]	G	T	3.716e^-4	0.857	INTRON CG32206
3L	19387044	3L_19387044_SNP [dm3] 3L_19393944_SNP [dm6]	A	T	3.716e^-4	0.857	INTRON CG32206
X	18866949	X_18866949_SNP [dm3] X_18972916_SNP [dm6]	C	T	3.721e^-4	0.857	INTRON CG43759
3L	11595799	3L_11595799_SNP [dm3] 3L_11602699_SNP [dm6]	G	A	3.723e^-4	0.857	UTR_5_PRIME CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	11142637	3L_11142637_SNP [dm3] 3L_11149537_SNP [dm6]	G	C	3.732e^-4	0.857	DOWNSTREAM CG6216 INTRON CG32082
3R	10347330	3R_10347330_SNP [dm3] 3R_14521608_SNP [dm6]	C	G	3.743e^-4	0.857	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
2L	12369426	2L_12369426_SNP [dm3] 2L_12369426_SNP [dm6]	A	C	3.750e^-4	0.857	UPSTREAM bru-2 INTRON bru-2
2L	2618754	2L_2618754_SNP [dm3] 2L_2618754_SNP [dm6]	C	T	3.760e^-4	0.857	INTERGENIC
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	3.772e^-4	0.857	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10065362	2L_10065362_SNP [dm3] 2L_10065362_SNP [dm6]	G	T	3.772e^-4	0.857	INTRON CG44153	TF binding site mE1_TFBS_chinmo
X	4466981	X_4466981_SNP [dm3] X_4572948_SNP [dm6]	T	C	3.806e^-4	0.857	INTRON CR32773
3R	5866986	3R_5866986_SNP [dm3] 3R_10041264_SNP [dm6]	A	G	3.814e^-4	0.857	INTRON Mical
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	3.819e^-4	0.857	INTRON Ccn
3R	2241015	3R_2241015_SNP [dm3] 3R_6415293_SNP [dm6]	C	G	3.823e^-4	0.857	INTRON gpp
3R	6175957	3R_6175957_SNP [dm3] 3R_10350235_SNP [dm6]	A	G	3.828e^-4	0.857	UTR_5_PRIME jumu DOWNSTREAM CG31406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1109306	3L_1109306_SNP [dm3] 3L_1109306_SNP [dm6]	G	A	3.831e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13302290	3L_13302290_INS [dm3] 3L_13309190_INS [dm6]	T	TGGACAATTAAAAACGCTTG...	3.831e^-4	0.857	INTERGENIC
X	2566219	X_2566219_SNP [dm3] X_2672186_SNP [dm6]	G	T	3.833e^-4	0.857	INTRON sgg
X	4883930	X_4883930_SNP [dm3] X_4989897_SNP [dm6]	G	A	3.837e^-4	0.857	INTRON CR44833
3L	3386407	3L_3386407_SNP [dm3] 3L_3386407_SNP [dm6]	C	A	3.838e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14946819	3R_14946819_SNP [dm3] 3R_19121097_SNP [dm6]	T	C	3.856e^-4	0.857	INTRON CG6040
2R	12338934	2R_12338934_SNP [dm3] 2R_16451429_SNP [dm6]	C	A	3.869e^-4	0.857	INTERGENIC
2L	17645435	2L_17645435_SNP [dm3] 2L_17645435_SNP [dm6]	G	A	3.872e^-4	0.857	UPSTREAM CR45699 INTERGENIC
3L	17617075	3L_17617075_SNP [dm3] 3L_17623975_SNP [dm6]	A	G	3.876e^-4	0.857	INTRON CG7510
2R	14188403	2R_14188403_SNP [dm3] 2R_18300898_SNP [dm6]	A	T	3.879e^-4	0.857	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2R	14188477	2R_14188477_DEL [dm3] 2R_18300972_DEL [dm6]	TACCAAATCATGT...	T	3.879e^-4	0.857	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14188492	2R_14188492_SNP [dm3] 2R_18300987_SNP [dm6]	C	G	3.879e^-4	0.857	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	12899380	X_12899380_SNP [dm3] X_13005347_SNP [dm6]	A	T	3.882e^-4	0.857	UPSTREAM CG15719 INTRON rad
3R	13270241	3R_13270241_SNP [dm3] 3R_17444519_SNP [dm6]	T	A	3.886e^-4	0.857	INTRON CG5873
3R	13270258	3R_13270258_SNP [dm3] 3R_17444536_SNP [dm6]	T	A	3.886e^-4	0.857	INTRON CG5873
3R	26407430	3R_26407430_SNP [dm3] 3R_30581708_SNP [dm6]	A	G	3.892e^-4	0.857	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
X	2372364	X_2372364_SNP [dm3] X_2478331_SNP [dm6]	C	T	3.900e^-4	0.857	UTR_3_PRIME trol INTRON trol
2R	14189800	2R_14189800_SNP [dm3] 2R_18302295_SNP [dm6]	C	A	3.901e^-4	0.857	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	14189801	2R_14189801_SNP [dm3] 2R_18302296_SNP [dm6]	C	A	3.901e^-4	0.857	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
3R	6797474	3R_6797474_SNP [dm3] 3R_10971752_SNP [dm6]	C	T	3.902e^-4	0.857	UPSTREAM CG34114 INTERGENIC
2R	18450618	2R_18450618_SNP [dm3] 2R_22563113_SNP [dm6]	G	A	3.908e^-4	0.857	UTR_3_PRIME CG11362 DOWNSTREAM dnr1
3L	4659154	3L_4659154_SNP [dm3] 3L_4659154_SNP [dm6]	T	G	3.916e^-4	0.857	INTRON axo
3L	4659156	3L_4659156_SNP [dm3] 3L_4659156_SNP [dm6]	C	A	3.916e^-4	0.857	INTRON axo
3R	27350675	3R_27350675_SNP [dm3] 3R_31524953_SNP [dm6]	G	A	3.921e^-4	0.857	INTERGENIC
3L	13417501	3L_13417501_SNP [dm3] 3L_13424401_SNP [dm6]	T	A	3.925e^-4	0.857	UPSTREAM CG33263 DOWNSTREAM CG14106 INTERGENIC
2L	14315563	2L_14315563_SNP [dm3] 2L_14315563_SNP [dm6]	T	A	3.927e^-4	0.857	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7269970	3L_7269970_SNP [dm3] 3L_7276870_SNP [dm6]	G	T	3.927e^-4	0.857	INTRON unc-13-4A
3L	7189272	3L_7189272_SNP [dm3] 3L_7196172_SNP [dm6]	T	G	3.928e^-4	0.857	INTERGENIC
3L	16647663	3L_16647663_SNP [dm3] 3L_16654563_SNP [dm6]	A	G	3.930e^-4	0.857	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	15006564	3L_15006564_SNP [dm3] 3L_15013464_SNP [dm6]	C	A	3.930e^-4	0.857	INTRON Reck	TF binding site BDTNP1_TFBS_dl
3R	26300401	3R_26300401_SNP [dm3] 3R_30474679_SNP [dm6]	C	T	3.934e^-4	0.857	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16982432	3L_16982432_SNP [dm3] 3L_16989332_SNP [dm6]	T	A	3.942e^-4	0.857	INTRON Exn
3L	16982523	3L_16982523_SNP [dm3] 3L_16989423_SNP [dm6]	T	A	3.942e^-4	0.857	INTRON Exn
3L	16982576	3L_16982576_SNP [dm3] 3L_16989476_SNP [dm6]	T	A	3.942e^-4	0.857	INTRON Exn
3L	16982578	3L_16982578_SNP [dm3] 3L_16989478_SNP [dm6]	A	T	3.942e^-4	0.857	INTRON Exn
3L	17625373	3L_17625373_SNP [dm3] 3L_17632273_SNP [dm6]	C	T	3.952e^-4	0.857	DOWNSTREAM CR44567 & 1 other INTERGENIC
3R	23749618	3R_23749618_SNP [dm3] 3R_27923896_SNP [dm6]	C	T	3.969e^-4	0.857	UPSTREAM snoRNA:Or-aca3 DOWNSTREAM CR45566 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11120002	3L_11120002_SNP [dm3] 3L_11126902_SNP [dm6]	C	G	3.971e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11120016	3L_11120016_SNP [dm3] 3L_11126916_SNP [dm6]	G	A	3.971e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11120078	3L_11120078_SNP [dm3] 3L_11126978_SNP [dm6]	C	G	3.971e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	6681245	2L_6681245_SNP [dm3] 2L_6681245_SNP [dm6]	G	A	3.986e^-4	0.857	INTRON Nhe3	TF binding site mE1_TFBS_inv
3L	3201827	3L_3201827_SNP [dm3] 3L_3201827_SNP [dm6]	G	A	3.996e^-4	0.857	SYNONYMOUS_CODING gry DOWNSTREAM CG32271
3R	14596993	3R_14596993_SNP [dm3] 3R_18771271_SNP [dm6]	C	T	3.997e^-4	0.857	INTRON CG7720
3L	11033603	3L_11033603_SNP [dm3] 3L_11040503_SNP [dm6]	C	T	3.999e^-4	0.857	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
2R	16097207	2R_16097207_SNP [dm3] 2R_20209702_SNP [dm6]	C	T	4.014e^-4	0.857	INTERGENIC
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	4.014e^-4	0.857	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
3R	25612675	3R_25612675_SNP [dm3] 3R_29786953_SNP [dm6]	C	T	4.016e^-4	0.857	INTRON kay
2R	12667091	2R_12667091_SNP [dm3] 2R_16779586_SNP [dm6]	C	T	4.016e^-4	0.857	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad
3R	9821345	3R_9821345_DEL [dm3] 3R_13995623_DEL [dm6]	ATA	A	4.019e^-4	0.857	INTRON rdx
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	4.020e^-4	0.857	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13289655	3L_13289655_SNP [dm3] 3L_13296555_SNP [dm6]	T	A	4.024e^-4	0.857	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289669	3L_13289669_DEL [dm3] 3L_13296569_DEL [dm6]	TTTGTGAATTTATGAACCA...	T	4.024e^-4	0.857	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289690	3L_13289690_DEL [dm3] 3L_13296590_DEL [dm6]	TAGAGTTCTGTAAATTTGGA...	T	4.024e^-4	0.857	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12332647	2L_12332647_SNP [dm3] 2L_12332647_SNP [dm6]	A	T	4.032e^-4	0.857	INTERGENIC
2R	15854967	2R_15854967_SNP [dm3] 2R_19967462_SNP [dm6]	T	G	4.032e^-4	0.857	INTERGENIC
X	14762881	X_14762881_SNP [dm3] X_14868848_SNP [dm6]	T	C	4.036e^-4	0.857	INTRON Flo2 & 1 other
X	13642578	X_13642578_SNP [dm3] X_13748545_SNP [dm6]	C	G	4.040e^-4	0.857	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18866617	X_18866617_SNP [dm3] X_18972584_SNP [dm6]	G	A	4.043e^-4	0.857	INTRON CG43759
3L	12465369	3L_12465369_SNP [dm3] 3L_12472269_SNP [dm6]	T	C	4.051e^-4	0.857	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19469820	3R_19469820_SNP [dm3] 3R_23644098_SNP [dm6]	T	G	4.058e^-4	0.857	INTRON CG31145
2L	3891114	2L_3891114_SNP [dm3] 2L_3891114_SNP [dm6]	C	T	4.070e^-4	0.857	INTRON capu
3L	3213934	3L_3213934_SNP [dm3] 3L_3213934_SNP [dm6]	G	A	4.070e^-4	0.857	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_cad
3L	3846798	3L_3846798_SNP [dm3] 3L_3846798_SNP [dm6]	C	G	4.070e^-4	0.857	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	3846804	3L_3846804_SNP [dm3] 3L_3846804_SNP [dm6]	T	A	4.070e^-4	0.857	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	4390532	3L_4390532_SNP [dm3] 3L_4390532_SNP [dm6]	T	C	4.070e^-4	0.857	SYNONYMOUS_CODING slow	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4491288	3L_4491288_SNP [dm3] 3L_4491288_SNP [dm6]	C	A	4.070e^-4	0.857	UPSTREAM CG13722 INTERGENIC
2L	9561704	2L_9561704_SNP [dm3] 2L_9561704_SNP [dm6]	G	A	4.071e^-4	0.857	INTRON jp
3R	5487488	3R_5487488_SNP [dm3] 3R_9661766_SNP [dm6]	T	A	4.076e^-4	0.857	SPLICE_SITE_REGION CG9492 INTRON CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19785843	3R_19785843_SNP [dm3] 3R_23960121_SNP [dm6]	C	T	4.079e^-4	0.857	UTR_3_PRIME AP-1sigma INTRON AP-1sigma
3L	9873150	3L_9873150_SNP [dm3] 3L_9880050_SNP [dm6]	T	G	4.090e^-4	0.857	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3R	5730320	3R_5730320_SNP [dm3] 3R_9904598_SNP [dm6]	A	G	4.094e^-4	0.857	INTRON Glut4EF
2L	6745420	2L_6745420_SNP [dm3] 2L_6745420_SNP [dm6]	C	T	4.094e^-4	0.857	SYNONYMOUS_CODING CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221
3L	3847970	3L_3847970_SNP [dm3] 3L_3847970_SNP [dm6]	G	C	4.097e^-4	0.857	INTRON Awh	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
3L	3850776	3L_3850776_SNP [dm3] 3L_3850776_SNP [dm6]	G	T	4.097e^-4	0.857	INTRON Awh
2R	12138926	2R_12138926_SNP [dm3] 2R_16251421_SNP [dm6]	C	A	4.108e^-4	0.857	INTRON CngA
3R	14282906	3R_14282906_SNP [dm3] 3R_18457184_SNP [dm6]	G	A	4.128e^-4	0.857	INTRON fru
3R	14282948	3R_14282948_SNP [dm3] 3R_18457226_SNP [dm6]	A	G	4.128e^-4	0.857	INTRON fru
3R	14282987	3R_14282987_SNP [dm3] 3R_18457265_SNP [dm6]	G	A	4.128e^-4	0.857	INTRON fru
3R	14282997	3R_14282997_SNP [dm3] 3R_18457275_SNP [dm6]	A	T	4.128e^-4	0.857	INTRON fru
2L	5866010	2L_5866010_SNP [dm3] 2L_5866010_SNP [dm6]	T	C	4.128e^-4	0.857	INTRON rau
3L	12097866	3L_12097866_SNP [dm3] 3L_12104766_SNP [dm6]	C	T	4.131e^-4	0.857	INTERGENIC
3R	25570946	3R_25570946_SNP [dm3] 3R_29745224_SNP [dm6]	C	T	4.136e^-4	0.857	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4253096	3R_4253096_SNP [dm3] 3R_8427374_SNP [dm6]	G	T	4.139e^-4	0.857	INTRON CG45263
2L	17702656	2L_17702656_SNP [dm3] 2L_17702656_SNP [dm6]	A	G	4.148e^-4	0.857	INTRON CadN	TF binding site mE1_TFBS_HSA
3R	5850542	3R_5850542_SNP [dm3] 3R_10024820_SNP [dm6]	A	T	4.152e^-4	0.857	INTRON Mical & 1 other
3R	10833625	3R_10833625_SNP [dm3] 3R_15007903_SNP [dm6]	A	C	4.155e^-4	0.857	INTERGENIC
3L	14065951	3L_14065951_SNP [dm3] 3L_14072851_SNP [dm6]	G	T	4.162e^-4	0.857	SYNONYMOUS_CODING Pex1
3R	5866612	3R_5866612_SNP [dm3] 3R_10040890_SNP [dm6]	T	C	4.163e^-4	0.857	INTRON Mical
3L	7628840	3L_7628840_SNP [dm3] 3L_7635740_SNP [dm6]	C	T	4.165e^-4	0.857	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16934027	X_16934027_SNP [dm3] X_17039994_SNP [dm6]	A	G	4.171e^-4	0.857	INTRON CG45002
3L	3001127	3L_3001127_SNP [dm3] 3L_3001127_SNP [dm6]	G	T	4.172e^-4	0.857	UPSTREAM FMRFaR INTERGENIC
2L	2073158	2L_2073158_SNP [dm3] 2L_2073158_SNP [dm6]	G	A	4.173e^-4	0.857	INTRON dpr3	TF binding site mE1_TFBS_chinmo
X	5870381	X_5870381_SNP [dm3] X_5976348_SNP [dm6]	A	G	4.181e^-4	0.857	INTRON Grip
3L	18796840	3L_18796840_INS [dm3] 3L_18803740_INS [dm6]	A	AGA	4.189e^-4	0.857	INTRON CG14073
3R	24210938	3R_24210938_SNP [dm3] 3R_28385216_SNP [dm6]	G	A	4.190e^-4	0.857	INTERGENIC
3R	27162085	3R_27162085_SNP [dm3] 3R_31336363_SNP [dm6]	G	A	4.191e^-4	0.857	INTRON CG34347
3L	13758651	3L_13758651_SNP [dm3] 3L_13765551_SNP [dm6]	A	G	4.205e^-4	0.857	INTRON bru-3
3L	10875861	3L_10875861_SNP [dm3] 3L_10882761_SNP [dm6]	C	T	4.211e^-4	0.857	UPSTREAM CG7949 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18796859	3L_18796859_SNP [dm3] 3L_18803759_SNP [dm6]	C	T	4.212e^-4	0.857	INTRON CG14073
3L	11330511	3L_11330511_SNP [dm3] 3L_11337411_SNP [dm6]	A	T	4.215e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_sens
X	18395693	X_18395693_SNP [dm3] X_18501660_SNP [dm6]	T	A	4.217e^-4	0.857	UTR_3_PRIME Wnt5 DOWNSTREAM Rad51D
X	20430092	X_20430092_SNP [dm3] X_20559065_SNP [dm6]	T	C	4.218e^-4	0.857	INTRON RunxB
X	19002290	X_19002290_SNP [dm3] X_19108257_SNP [dm6]	G	T	4.219e^-4	0.857	INTERGENIC	transposable element FlyBase
X	3888668	X_3888668_SNP [dm3] X_3994635_SNP [dm6]	C	T	4.225e^-4	0.857	INTERGENIC
3R	10352938	3R_10352938_SNP [dm3] 3R_14527216_SNP [dm6]	T	C	4.226e^-4	0.857	INTRON Pde6
2L	12448914	2L_12448914_SNP [dm3] 2L_12448914_SNP [dm6]	C	T	4.234e^-4	0.857	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3L	1842777	3L_1842777_SNP [dm3] 3L_1842777_SNP [dm6]	G	A	4.244e^-4	0.857	UPSTREAM Cpr62Bc INTERGENIC
3L	13552215	3L_13552215_SNP [dm3] 3L_13559115_SNP [dm6]	G	C	4.248e^-4	0.857	INTRON bru-3
X	14560754	X_14560754_SNP [dm3] X_14666721_SNP [dm6]	T	C	4.250e^-4	0.857	INTERGENIC
2R	14185843	2R_14185843_SNP [dm3] 2R_18298338_SNP [dm6]	T	C	4.252e^-4	0.857	SYNONYMOUS_CODING CG18539 UTR_5_PRIME CG18539 UPSTREAM CG18540 DOWNSTREAM CG18538 INTRON sbb
2R	17810642	2R_17810642_INS [dm3] 2R_21923137_INS [dm6]	G	GG	4.253e^-4	0.857	INTRON Fili
3L	11124627	3L_11124627_SNP [dm3] 3L_11131527_SNP [dm6]	T	G	4.267e^-4	0.859	DOWNSTREAM CG32074 & 1 other INTRON CG42575
3L	7642121	3L_7642121_SNP [dm3] 3L_7649021_SNP [dm6]	T	C	4.282e^-4	0.859	INTERGENIC
3R	15945573	3R_15945573_SNP [dm3] 3R_20119851_SNP [dm6]	T	C	4.291e^-4	0.859	INTERGENIC
X	14025577	X_14025577_DEL [dm3] X_14131544_DEL [dm6]	AAACAAAAATGGCGGCGCTT...	A	4.297e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17374499	X_17374499_SNP [dm3] X_17480466_SNP [dm6]	C	T	4.302e^-4	0.859	INTRON CG43658
3R	18505663	3R_18505663_SNP [dm3] 3R_22679941_SNP [dm6]	C	T	4.307e^-4	0.859	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17759794	2R_17759794_SNP [dm3] 2R_21872289_SNP [dm6]	A	T	4.308e^-4	0.859	START_GAINED Fili UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25510845	3R_25510845_SNP [dm3] 3R_29685123_SNP [dm6]	T	G	4.314e^-4	0.859	SYNONYMOUS_CODING Gycalpha99B DOWNSTREAM Obp99c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26411240	3R_26411240_SNP [dm3] 3R_30585518_SNP [dm6]	G	C	4.314e^-4	0.859	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad
3R	5726668	3R_5726668_SNP [dm3] 3R_9900946_SNP [dm6]	T	C	4.317e^-4	0.859	INTRON Glut4EF
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	4.320e^-4	0.859	INTRON axo
3L	17948312	3L_17948312_SNP [dm3] 3L_17955212_SNP [dm6]	C	T	4.337e^-4	0.859	SPLICE_SITE_REGION Eip75B INTRON Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12018890	3L_12018890_SNP [dm3] 3L_12025790_SNP [dm6]	T	A	4.340e^-4	0.859	INTRON rols
3L	18429307	3L_18429307_SNP [dm3] 3L_18436207_SNP [dm6]	G	T	4.341e^-4	0.859	INTERGENIC
3R	7606433	3R_7606433_SNP [dm3] 3R_11780711_SNP [dm6]	T	G	4.354e^-4	0.859	DOWNSTREAM CG17360 EXON CR45595	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	4.356e^-4	0.859	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
3L	19386622	3L_19386622_SNP [dm3] 3L_19393522_SNP [dm6]	C	A	4.359e^-4	0.859	INTRON CG32206
X	3888666	X_3888666_SNP [dm3] X_3994633_SNP [dm6]	A	C	4.362e^-4	0.859	INTERGENIC
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	4.363e^-4	0.859	INTRON CG34391
2L	13088258	2L_13088258_SNP [dm3] 2L_13088258_SNP [dm6]	T	G	4.371e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10352856	3R_10352856_DEL [dm3] 3R_14527134_DEL [dm6]	CTGCACAGCGTATGGCCAAC...	A	4.373e^-4	0.859	INTRON Pde6
2R	15237788	2R_15237788_SNP [dm3] 2R_19350283_SNP [dm6]	G	T	4.381e^-4	0.859	INTRON Rgk1
3R	18730407	3R_18730407_SNP [dm3] 3R_22904685_SNP [dm6]	T	G	4.392e^-4	0.859	INTRON klg
3R	18730422	3R_18730422_SNP [dm3] 3R_22904700_SNP [dm6]	A	G	4.392e^-4	0.859	INTRON klg
3R	8985411	3R_8985411_SNP [dm3] 3R_13159689_SNP [dm6]	C	G	4.409e^-4	0.859	INTRON timeout
3L	12448318	3L_12448318_SNP [dm3] 3L_12455218_SNP [dm6]	G	A	4.418e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	4798960	X_4798960_SNP [dm3] X_4904927_SNP [dm6]	G	C	4.429e^-4	0.859	INTRON CG42594	TF binding site mE1_TFBS_chinmo
X	17014392	X_17014392_SNP [dm3] X_17120359_SNP [dm6]	G	C	4.438e^-4	0.859	INTRON CG5004
X	15360169	X_15360169_SNP [dm3] X_15466136_SNP [dm6]	A	G	4.441e^-4	0.859	DOWNSTREAM CG15642 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	620448	3L_620448_SNP [dm3] 3L_620448_SNP [dm6]	T	G	4.452e^-4	0.859	DOWNSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6507365	2R_6507365_SNP [dm3] 2R_10619860_SNP [dm6]	G	A	4.454e^-4	0.859	INTRON CG11883
2R	6507378	2R_6507378_SNP [dm3] 2R_10619873_SNP [dm6]	A	T	4.454e^-4	0.859	INTRON CG11883
3L	18540959	3L_18540959_SNP [dm3] 3L_18547859_SNP [dm6]	T	A	4.460e^-4	0.859	INTERGENIC
3R	26062063	3R_26062063_SNP [dm3] 3R_30236341_SNP [dm6]	A	T	4.462e^-4	0.859	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20706283	2R_20706283_SNP [dm3] 2R_24818760_SNP [dm6]	G	A	4.478e^-4	0.859	INTRON Dll
2R	18964853	2R_18964853_SNP [dm3] 2R_23077330_SNP [dm6]	G	A	4.482e^-4	0.859	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17701431	2L_17701431_SNP [dm3] 2L_17701431_SNP [dm6]	A	C	4.489e^-4	0.859	INTRON CadN
X	18692895	X_18692895_SNP [dm3] X_18798862_SNP [dm6]	T	C	4.493e^-4	0.859	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20790297	X_20790297_SNP [dm3] X_20919270_SNP [dm6]	A	T	4.494e^-4	0.859	INTRON shakB
2R	14346144	2R_14346144_DEL [dm3] 2R_18458639_DEL [dm6]	TT	T	4.495e^-4	0.859	INTRON CG30116
3L	7093542	3L_7093542_SNP [dm3] 3L_7100442_SNP [dm6]	A	C	4.496e^-4	0.859	INTRON form3
3R	22562922	3R_22562922_INS [dm3] 3R_26737200_INS [dm6]	T	TAT	4.499e^-4	0.859	UPSTREAM CG6403 & 1 other INTERGENIC
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	4.504e^-4	0.859	INTRON bol
3L	3844982	3L_3844982_SNP [dm3] 3L_3844982_SNP [dm6]	T	C	4.509e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	3692520	2L_3692520_SNP [dm3] 2L_3692520_SNP [dm6]	A	T	4.526e^-4	0.859	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
3R	26987833	3R_26987833_SNP [dm3] 3R_31162111_SNP [dm6]	C	A	4.530e^-4	0.859	INTRON Gycbeta100B & 1 other
2L	5415585	2L_5415585_SNP [dm3] 2L_5415585_SNP [dm6]	C	T	4.566e^-4	0.859	SYNONYMOUS_CODING H15	TF binding site mE1_TFBS_cad
X	17720038	X_17720038_SNP [dm3] X_17826005_SNP [dm6]	T	A	4.582e^-4	0.859	INTRON Socs16D
3L	4252069	3L_4252069_SNP [dm3] 3L_4252069_SNP [dm6]	T	G	4.584e^-4	0.859	UPSTREAM ago INTRON ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	4975196	3L_4975196_SNP [dm3] 3L_4975196_SNP [dm6]	G	A	4.594e^-4	0.859	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	5672502	2R_5672502_SNP [dm3] 2R_9784997_SNP [dm6]	A	G	4.603e^-4	0.859	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2070979	2L_2070979_SNP [dm3] 2L_2070979_SNP [dm6]	A	G	4.635e^-4	0.859	INTRON dpr3
2L	1269568	2L_1269568_SNP [dm3] 2L_1269568_SNP [dm6]	C	G	4.638e^-4	0.859	INTRON robo3
2R	13356558	2R_13356558_SNP [dm3] 2R_17469053_SNP [dm6]	G	A	4.640e^-4	0.859	SYNONYMOUS_CODING Tes UPSTREAM qkr54B
2L	7955740	2L_7955740_SNP [dm3] 2L_7955740_SNP [dm6]	A	G	4.646e^-4	0.859	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	16883382	3L_16883382_SNP [dm3] 3L_16890282_SNP [dm6]	T	C	4.654e^-4	0.859	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3R	6732601	3R_6732601_DEL [dm3] 3R_10906879_DEL [dm6]	GATTTAATTGGGTATTTCTG...	G	4.656e^-4	0.859	INTERGENIC
2R	16062602	2R_16062602_SNP [dm3] 2R_20175097_SNP [dm6]	T	C	4.658e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6423648	3R_6423648_SNP [dm3] 3R_10597926_SNP [dm6]	C	A	4.660e^-4	0.859	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4251871	3L_4251871_SNP [dm3] 3L_4251871_SNP [dm6]	G	A	4.662e^-4	0.859	INTRON ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	9723986	2R_9723986_SNP [dm3] 2R_13836481_SNP [dm6]	A	G	4.668e^-4	0.859	UTR_5_PRIME CG6347
3L	11226333	3L_11226333_SNP [dm3] 3L_11233233_SNP [dm6]	T	C	4.679e^-4	0.859	SYNONYMOUS_CODING Ir68a
3L	11336597	3L_11336597_INS [dm3] 3L_11343497_INS [dm6]	A	CGTCTATAGCT...	4.688e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	15472712	2R_15472712_SNP [dm3] 2R_19585207_SNP [dm6]	C	A	4.691e^-4	0.859	INTRON sm
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	4.702e^-4	0.859	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11122597	3L_11122597_SNP [dm3] 3L_11129497_SNP [dm6]	G	C	4.703e^-4	0.859	UTR_5_PRIME CG42575
3L	3031714	3L_3031714_SNP [dm3] 3L_3031714_SNP [dm6]	C	T	4.719e^-4	0.859	INTERGENIC
2R	6140349	2R_6140349_SNP [dm3] 2R_10252844_SNP [dm6]	C	A	4.719e^-4	0.859	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	13289664	3L_13289664_SNP [dm3] 3L_13296564_SNP [dm6]	T	A	4.721e^-4	0.859	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6450108	X_6450108_SNP [dm3] X_6556075_SNP [dm6]	C	T	4.722e^-4	0.859	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	21442908	3R_21442908_SNP [dm3] 3R_25617186_SNP [dm6]	A	T	4.722e^-4	0.859	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	3688995	2L_3688995_INS [dm3] 2L_3688995_INS [dm6]	A	ACATATGTGTG...	4.722e^-4	0.859	INTRON CG34340
2R	6664162	2R_6664162_SNP [dm3] 2R_10776657_SNP [dm6]	C	A	4.726e^-4	0.859	INTRON CG33144
X	5080125	X_5080125_SNP [dm3] X_5186092_SNP [dm6]	C	A	4.727e^-4	0.859	INTRON rg & 1 other
2L	2523467	2L_2523467_SNP [dm3] 2L_2523467_SNP [dm6]	A	C	4.731e^-4	0.859	INTERGENIC
3L	8341207	3L_8341207_SNP [dm3] 3L_8348107_SNP [dm6]	C	T	4.734e^-4	0.859	INTRON GAPcenA	TF binding site mE1_TFBS_cad
3L	11225270	3L_11225270_SNP [dm3] 3L_11232170_SNP [dm6]	T	G	4.746e^-4	0.859	UPSTREAM CR45405 DOWNSTREAM Ir68a INTERGENIC
3L	11273746	3L_11273746_SNP [dm3] 3L_11280646_SNP [dm6]	A	C	4.749e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17703120	2L_17703120_SNP [dm3] 2L_17703120_SNP [dm6]	A	C	4.749e^-4	0.859	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18505533	3R_18505533_SNP [dm3] 3R_22679811_SNP [dm6]	G	A	4.754e^-4	0.859	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12329952	X_12329952_SNP [dm3] X_12435919_SNP [dm6]	C	T	4.761e^-4	0.859	INTRON Pkcdelta
2R	12551568	2R_12551568_SNP [dm3] 2R_16664063_SNP [dm6]	T	G	4.762e^-4	0.859	UTR_5_PRIME Picot UPSTREAM Picot
3L	3386228	3L_3386228_INS [dm3] 3L_3386228_INS [dm6]	T	TTGTTTGGT	4.769e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16097895	2R_16097895_SNP [dm3] 2R_20210390_SNP [dm6]	T	C	4.772e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_inv
X	13642707	X_13642707_SNP [dm3] X_13748674_SNP [dm6]	G	A	4.787e^-4	0.859	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13642731	X_13642731_DEL [dm3] X_13748698_DEL [dm6]	CT	A	4.787e^-4	0.859	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10813596	2L_10813596_SNP [dm3] 2L_10813596_SNP [dm6]	C	T	4.790e^-4	0.859	INTRON Nos
2R	18923687	2R_18923687_SNP [dm3] 2R_23036164_SNP [dm6]	C	T	4.791e^-4	0.859	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	9870655	3L_9870655_DEL [dm3] 3L_9877555_DEL [dm6]	TCG	T	4.796e^-4	0.859	INTERGENIC
2L	12117787	2L_12117787_SNP [dm3] 2L_12117787_SNP [dm6]	T	C	4.809e^-4	0.859	INTRON CG17211
3L	7785127	3L_7785127_SNP [dm3] 3L_7792027_SNP [dm6]	G	A	4.814e^-4	0.859	INTRON CG32369
3L	12465455	3L_12465455_SNP [dm3] 3L_12472355_SNP [dm6]	C	A	4.816e^-4	0.859	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	10666124	3L_10666124_SNP [dm3] 3L_10673024_SNP [dm6]	C	G	4.821e^-4	0.859	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	6045267	2L_6045267_SNP [dm3] 2L_6045267_SNP [dm6]	C	T	4.822e^-4	0.859	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13311039	3L_13311039_SNP [dm3] 3L_13317939_SNP [dm6]	A	T	4.823e^-4	0.859	INTERGENIC
2R	16409706	2R_16409706_INS [dm3] 2R_20522201_INS [dm6]	G	GATGTGTTG	4.828e^-4	0.859	INTERGENIC
X	19360273	X_19360273_SNP [dm3] X_19466240_SNP [dm6]	G	C	4.830e^-4	0.859	INTRON kek5	TF binding site mE1_TFBS_cad
3L	4026487	3L_4026487_SNP [dm3] 3L_4026487_SNP [dm6]	T	A	4.830e^-4	0.859	UPSTREAM Gr64a & 1 other INTERGENIC
2L	632687	2L_632687_SNP [dm3] 2L_632687_SNP [dm6]	A	G	4.830e^-4	0.859	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_FL_PElem_SS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results