DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.017e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04058

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1152 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7168054	2L_7168054_SNP [dm3] 2L_7168054_SNP [dm6]	A	C	6.726e^-7	1	INTERGENIC
2L	170878	2L_170878_DEL [dm3] 2L_170878_DEL [dm6]	AT	A	2.493e^-6	1	INTRON spen
2L	170881	2L_170881_MNP [dm3] 2L_170881_MNP [dm6]	AAG	TTT	2.658e^-6	1	INTRON spen
X	14911270	X_14911270_SNP [dm3] X_15017237_SNP [dm6]	A	T	3.481e^-6	1	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17634459	X_17634459_DEL [dm3] X_17740426_DEL [dm6]	AGTCAGATAGCGGGCTCTTC...	A	6.710e^-6	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	136169	2L_136169_SNP [dm3] 2L_136169_SNP [dm6]	T	A	7.606e^-6	1	DOWNSTREAM CR44185 INTRON CG11455 EXON CR44186
2L	7167879	2L_7167879_SNP [dm3] 2L_7167879_SNP [dm6]	G	A	9.546e^-6	1	INTERGENIC
X	15553595	X_15553595_SNP [dm3] X_15659562_SNP [dm6]	G	T	9.566e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2L	9324932	2L_9324932_SNP [dm3] 2L_9324932_SNP [dm6]	A	G	1.237e^-5	1	UPSTREAM CR45456 INTERGENIC
2L	9324773	2L_9324773_SNP [dm3] 2L_9324773_SNP [dm6]	T	C	1.277e^-5	1	INTERGENIC
2L	132036	2L_132036_SNP [dm3] 2L_132036_SNP [dm6]	A	G	1.300e^-5	1	UPSTREAM Gs1 INTRON CG11455	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	16908079	X_16908079_SNP [dm3] X_17014046_SNP [dm6]	A	T	1.376e^-5	1	INTRON CG45002
X	20945805	X_20945805_SNP [dm3] X_21074778_SNP [dm6]	C	T	1.394e^-5	1	INTRON bves
2R	10651027	2R_10651027_SNP [dm3] 2R_14763522_SNP [dm6]	G	T	1.532e^-5	1	INTRON Spred
2L	15439840	2L_15439840_SNP [dm3] 2L_15439840_SNP [dm6]	G	A	1.614e^-5	1	INTERGENIC
2L	13592866	2L_13592866_SNP [dm3] 2L_13592866_SNP [dm6]	G	T	1.878e^-5	1	INTRON kuz
3R	21376455	3R_21376455_SNP [dm3] 3R_25550733_SNP [dm6]	T	C	1.975e^-5	1	INTRON msi
X	15553576	X_15553576_SNP [dm3] X_15659543_SNP [dm6]	T	A	2.234e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2R	14100218	2R_14100218_SNP [dm3] 2R_18212713_SNP [dm6]	A	G	2.295e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18930	2L_18930_SNP [dm3] 2L_18930_SNP [dm6]	T	C	2.354e^-5	1	UPSTREAM l_2_gl INTRON l_2_gl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14622504	3R_14622504_SNP [dm3] 3R_18796782_SNP [dm6]	T	G	2.438e^-5	1	INTERGENIC
2R	14100202	2R_14100202_SNP [dm3] 2R_18212697_SNP [dm6]	C	T	2.452e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14100215	2R_14100215_SNP [dm3] 2R_18212710_SNP [dm6]	T	A	2.452e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14664078	3R_14664078_SNP [dm3] 3R_18838356_SNP [dm6]	A	G	2.476e^-5	1	INTRON CG18208
3R	14258901	3R_14258901_DEL [dm3] 3R_18433179_DEL [dm6]	GTTTGTTTG	G	2.509e^-5	1	INTRON fru
2L	12275	2L_12275_SNP [dm3] 2L_12275_SNP [dm6]	G	C	2.551e^-5	1	INTRON l_2_gl
2R	11899533	2R_11899533_SNP [dm3] 2R_16012028_SNP [dm6]	G	T	2.631e^-5	1	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7140330	2R_7140330_SNP [dm3] 2R_11252825_SNP [dm6]	C	A	2.713e^-5	1	NON_SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a
3L	937914	3L_937914_SNP [dm3] 3L_937914_SNP [dm6]	G	C	2.800e^-5	1	INTRON Glut1
2L	17510461	2L_17510461_SNP [dm3] 2L_17510461_SNP [dm6]	C	A	2.802e^-5	1	INTRON Dhc36C
2R	14346354	2R_14346354_SNP [dm3] 2R_18458849_SNP [dm6]	G	A	2.808e^-5	1	DOWNSTREAM CG30116 INTRON CG30116
2L	172166	2L_172166_SNP [dm3] 2L_172166_SNP [dm6]	C	A	2.813e^-5	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	36861	2L_36861_SNP [dm3] 2L_36861_SNP [dm6]	T	G	2.828e^-5	1	SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	126875	2L_126875_SNP [dm3] 2L_126875_SNP [dm6]	A	G	2.905e^-5	1	INTRON CG11455 & 1 other
X	15553596	X_15553596_SNP [dm3] X_15659563_SNP [dm6]	A	G	3.058e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2L	135931	2L_135931_SNP [dm3] 2L_135931_SNP [dm6]	A	G	3.063e^-5	1	UPSTREAM CR44186 INTRON CG11455 EXON CR44185
X	15553602	X_15553602_SNP [dm3] X_15659569_SNP [dm6]	G	C	3.106e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
X	14911249	X_14911249_SNP [dm3] X_15017216_SNP [dm6]	G	C	3.222e^-5	1	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10624763	2R_10624763_SNP [dm3] 2R_14737258_SNP [dm6]	G	C	3.357e^-5	1	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	22141	2L_22141_SNP [dm3] 2L_22141_SNP [dm6]	T	A	3.473e^-5	1	SYNONYMOUS_CODING Ir21a UPSTREAM l_2_gl EXON CR43609	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9658669	2R_9658669_SNP [dm3] 2R_13771164_SNP [dm6]	G	T	3.632e^-5	1	INTRON Cpr50Ca
2L	167152	2L_167152_SNP [dm3] 2L_167152_SNP [dm6]	A	G	3.645e^-5	1	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24613796	3R_24613796_SNP [dm3] 3R_28788074_SNP [dm6]	C	A	3.675e^-5	1	INTERGENIC
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	3.730e^-5	1	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	16471465	3L_16471465_SNP [dm3] 3L_16478365_SNP [dm6]	G	C	3.900e^-5	1	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
2L	3655732	2L_3655732_SNP [dm3] 2L_3655732_SNP [dm6]	A	C	3.951e^-5	1	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11898487	2R_11898487_SNP [dm3] 2R_16010982_SNP [dm6]	A	T	4.002e^-5	1	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	123591	2L_123591_SNP [dm3] 2L_123591_SNP [dm6]	A	G	4.038e^-5	1	SYNONYMOUS_CODING CG3164 INTRON CG11455 EXON CR44969	transposable element FlyBase
2L	15439766	2L_15439766_SNP [dm3] 2L_15439766_SNP [dm6]	G	A	4.052e^-5	1	INTERGENIC
3L	8667286	3L_8667286_SNP [dm3] 3L_8674186_SNP [dm6]	A	G	4.255e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
X	16934027	X_16934027_SNP [dm3] X_17039994_SNP [dm6]	A	G	4.264e^-5	1	INTRON CG45002
X	14910727	X_14910727_SNP [dm3] X_15016694_SNP [dm6]	C	T	4.330e^-5	1	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	16908028	X_16908028_SNP [dm3] X_17013995_SNP [dm6]	C	T	4.571e^-5	1	INTRON CG45002
2L	19469155	2L_19469155_SNP [dm3] 2L_19469155_SNP [dm6]	C	G	4.635e^-5	1	DOWNSTREAM CR45723 EXON CR45722
2L	8979833	2L_8979833_SNP [dm3] 2L_8979833_SNP [dm6]	C	A	4.659e^-5	1	UPSTREAM CG18662 INTRON CG13101
3L	13289655	3L_13289655_SNP [dm3] 3L_13296555_SNP [dm6]	T	A	4.666e^-5	1	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289669	3L_13289669_DEL [dm3] 3L_13296569_DEL [dm6]	TTTGTGAATTTATGAACCA...	T	4.666e^-5	1	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289690	3L_13289690_DEL [dm3] 3L_13296590_DEL [dm6]	TAGAGTTCTGTAAATTTGGA...	T	4.666e^-5	1	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21331952	3R_21331952_SNP [dm3] 3R_25506230_SNP [dm6]	T	A	4.869e^-5	1	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	13294528	3L_13294528_SNP [dm3] 3L_13301428_SNP [dm6]	A	C	4.978e^-5	1	UPSTREAM SP & 1 other INTERGENIC
2R	11687790	2R_11687790_SNP [dm3] 2R_15800285_SNP [dm6]	T	A	5.119e^-5	1	INTRON Zasp52 & 1 other
2L	129319	2L_129319_SNP [dm3] 2L_129319_SNP [dm6]	A	G	5.149e^-5	1	UPSTREAM CG3164 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17973177	3R_17973177_SNP [dm3] 3R_22147455_SNP [dm6]	A	G	5.371e^-5	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	19408577	2R_19408577_SNP [dm3] 2R_23521054_SNP [dm6]	A	G	5.562e^-5	1	INTRON RabX1
2L	200342	2L_200342_SNP [dm3] 2L_200342_SNP [dm6]	T	C	5.589e^-5	1	INTRON spen
2L	7169060	2L_7169060_SNP [dm3] 2L_7169060_SNP [dm6]	A	G	5.658e^-5	1	INTERGENIC
3L	14244718	3L_14244718_SNP [dm3] 3L_14251618_SNP [dm6]	T	G	5.728e^-5	1	INTERGENIC
2L	885686	2L_885686_SNP [dm3] 2L_885686_SNP [dm6]	T	G	5.939e^-5	1	UPSTREAM CG15824 INTERGENIC
3R	21331960	3R_21331960_DEL [dm3] 3R_25506238_DEL [dm6]	TAGCATTT	T	6.433e^-5	1	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14346359	2R_14346359_SNP [dm3] 2R_18458854_SNP [dm6]	A	C	6.680e^-5	1	DOWNSTREAM CG30116 INTRON CG30116
2L	160228	2L_160228_SNP [dm3] 2L_160228_SNP [dm6]	T	C	6.710e^-5	1	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	6.748e^-5	1	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2L	186136	2L_186136_SNP [dm3] 2L_186136_SNP [dm6]	T	G	6.858e^-5	1	INTRON spen	TF binding site mE1_TFBS_cad
2L	15461981	2L_15461981_SNP [dm3] 2L_15461981_SNP [dm6]	G	A	6.913e^-5	1	INTERGENIC
2L	38826	2L_38826_SNP [dm3] 2L_38826_SNP [dm6]	G	A	7.160e^-5	1	INTRON Cda5
2L	171348	2L_171348_SNP [dm3] 2L_171348_SNP [dm6]	C	A	7.257e^-5	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	250955	2L_250955_SNP [dm3] 2L_250955_SNP [dm6]	T	C	7.266e^-5	1	UPSTREAM kis DOWNSTREAM Rpp30 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	12769367	3L_12769367_SNP [dm3] 3L_12776267_SNP [dm6]	A	G	8.144e^-5	1	NON_SYNONYMOUS_CODING CG32106
2L	7167968	2L_7167968_SNP [dm3] 2L_7167968_SNP [dm6]	C	A	8.229e^-5	1	INTERGENIC
2L	15824669	2L_15824669_SNP [dm3] 2L_15824669_SNP [dm6]	C	T	8.251e^-5	1	INTERGENIC
X	15553516	X_15553516_DEL [dm3] X_15659483_DEL [dm6]	AA	A	8.322e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2L	1672566	2L_1672566_SNP [dm3] 2L_1672566_SNP [dm6]	T	C	8.343e^-5	1	INTRON chinmo
2L	12309708	2L_12309708_SNP [dm3] 2L_12309708_SNP [dm6]	T	C	8.633e^-5	1	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19080738	2R_19080738_SNP [dm3] 2R_23193215_SNP [dm6]	T	A	8.635e^-5	1	INTRON CG34371
2L	119610	2L_119610_SNP [dm3] 2L_119610_SNP [dm6]	G	T	8.718e^-5	1	INTRON CG11455 & 1 other
2L	35760	2L_35760_SNP [dm3] 2L_35760_SNP [dm6]	A	C	9.169e^-5	1	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5141192	3L_5141192_SNP [dm3] 3L_5148092_SNP [dm6]	A	G	9.233e^-5	1	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	21633588	2L_21633588_SNP [dm3] 2L_21633588_SNP [dm6]	C	T	9.235e^-5	1	UTR_5_PRIME Ac3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	59472	2L_59472_DEL [dm3] 2L_59472_DEL [dm6]	ACAAG	TT	9.257e^-5	1	UPSTREAM Cda5 INTRON Cda5
X	15292394	X_15292394_SNP [dm3] X_15398361_SNP [dm6]	C	T	9.383e^-5	1	INTRON Cngl
X	15292396	X_15292396_SNP [dm3] X_15398363_SNP [dm6]	T	G	9.383e^-5	1	INTRON Cngl
2L	140689	2L_140689_SNP [dm3] 2L_140689_SNP [dm6]	T	C	9.406e^-5	1	NON_SYNONYMOUS_CODING CG31975 UTR_5_PRIME CG31976 DOWNSTREAM CG31974 INTRON CG11455
2L	19701479	2L_19701479_SNP [dm3] 2L_19701479_SNP [dm6]	G	T	9.498e^-5	1	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9582179	2R_9582179_SNP [dm3] 2R_13694674_SNP [dm6]	A	G	9.500e^-5	1	INTRON fas
2L	7167967	2L_7167967_SNP [dm3] 2L_7167967_SNP [dm6]	A	C	9.768e^-5	1	INTERGENIC
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	9.961e^-5	1	UPSTREAM CG2955 INTERGENIC
3L	5991802	3L_5991802_SNP [dm3] 3L_5998702_SNP [dm6]	C	A	1.016e^-4	1	INTRON PVRAP
2L	39980	2L_39980_SNP [dm3] 2L_39980_SNP [dm6]	A	C	1.034e^-4	1	INTRON Cda5
3L	8150002	3L_8150002_SNP [dm3] 3L_8156902_SNP [dm6]	C	A	1.036e^-4	1	INTRON CG42445
2L	3164487	2L_3164487_SNP [dm3] 2L_3164487_SNP [dm6]	C	A	1.037e^-4	1	INTRON Hydr2
2L	2354924	2L_2354924_SNP [dm3] 2L_2354924_SNP [dm6]	G	A	1.044e^-4	1	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad
X	14911381	X_14911381_SNP [dm3] X_15017348_SNP [dm6]	G	A	1.122e^-4	1	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13952234	3R_13952234_SNP [dm3] 3R_18126512_SNP [dm6]	C	T	1.150e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_twi
3L	1453381	3L_1453381_SNP [dm3] 3L_1453381_SNP [dm6]	G	A	1.150e^-4	1	INTRON Ptp61F
2L	7006792	2L_7006792_SNP [dm3] 2L_7006792_SNP [dm6]	C	T	1.179e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7006794	2L_7006794_SNP [dm3] 2L_7006794_SNP [dm6]	G	A	1.179e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7006805	2L_7006805_SNP [dm3] 2L_7006805_SNP [dm6]	A	G	1.179e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	22241652	2L_22241652_SNP [dm3] 2L_22241652_SNP [dm6]	T	G	1.185e^-4	1	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241685	2L_22241685_SNP [dm3] 2L_22241685_SNP [dm6]	C	T	1.185e^-4	1	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241714	2L_22241714_SNP [dm3] 2L_22241714_SNP [dm6]	C	T	1.185e^-4	1	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241737	2L_22241737_SNP [dm3] 2L_22241737_SNP [dm6]	C	T	1.185e^-4	1	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241798	2L_22241798_SNP [dm3] 2L_22241798_SNP [dm6]	A	G	1.185e^-4	1	UTR_3_PRIME CG3262 DOWNSTREAM CG3262
2L	9546658	2L_9546658_SNP [dm3] 2L_9546658_SNP [dm6]	G	C	1.200e^-4	1	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
2L	5372	2L_5372_SNP [dm3] 2L_5372_SNP [dm6]	T	A	1.203e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11871382	2L_11871382_SNP [dm3] 2L_11871382_SNP [dm6]	G	C	1.214e^-4	1	INTRON Pde1c
2L	7167943	2L_7167943_SNP [dm3] 2L_7167943_SNP [dm6]	G	T	1.223e^-4	1	INTERGENIC
2L	15836217	2L_15836217_SNP [dm3] 2L_15836217_SNP [dm6]	C	G	1.240e^-4	1	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	7167877	2L_7167877_SNP [dm3] 2L_7167877_SNP [dm6]	A	T	1.284e^-4	1	INTERGENIC
3R	14259106	3R_14259106_SNP [dm3] 3R_18433384_SNP [dm6]	A	G	1.292e^-4	1	INTRON fru
3R	14259221	3R_14259221_SNP [dm3] 3R_18433499_SNP [dm6]	A	G	1.292e^-4	1	INTRON fru
2L	42772	2L_42772_SNP [dm3] 2L_42772_SNP [dm6]	A	C	1.292e^-4	1	INTRON Cda5	TF binding site mE1_TFBS_HSA
2R	19358210	2R_19358210_SNP [dm3] 2R_23470687_SNP [dm6]	G	A	1.298e^-4	1	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	7369368	2R_7369368_SNP [dm3] 2R_11481863_SNP [dm6]	A	T	1.312e^-4	1	INTRON inv
3R	21296325	3R_21296325_DEL [dm3] 3R_25470603_DEL [dm6]	CAC	C	1.320e^-4	1	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3L	13294600	3L_13294600_SNP [dm3] 3L_13301500_SNP [dm6]	C	A	1.323e^-4	1	UPSTREAM SP & 1 other INTERGENIC
2L	45120	2L_45120_SNP [dm3] 2L_45120_SNP [dm6]	T	A	1.326e^-4	1	INTRON Cda5	TF binding site mE1_TFBS_HSA
2L	171047	2L_171047_SNP [dm3] 2L_171047_SNP [dm6]	A	T	1.333e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl
2L	6353	2L_6353_SNP [dm3] 2L_6353_SNP [dm6]	C	T	1.345e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	158894	2L_158894_SNP [dm3] 2L_158894_SNP [dm6]	G	A	1.374e^-4	1	UPSTREAM spen & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1185617	2L_1185617_SNP [dm3] 2L_1185617_SNP [dm6]	G	A	1.375e^-4	1	UTR_3_PRIME Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	14108953	3L_14108953_SNP [dm3] 3L_14115853_SNP [dm6]	C	T	1.378e^-4	1	INTRON Sox21b
3L	14108963	3L_14108963_SNP [dm3] 3L_14115863_SNP [dm6]	T	C	1.378e^-4	1	INTRON Sox21b
2L	12460	2L_12460_SNP [dm3] 2L_12460_SNP [dm6]	T	C	1.384e^-4	1	NON_SYNONYMOUS_CODING l_2_gl
3L	13422245	3L_13422245_SNP [dm3] 3L_13429145_SNP [dm6]	A	G	1.386e^-4	1	UTR_3_PRIME CG10713
2L	171550	2L_171550_SNP [dm3] 2L_171550_SNP [dm6]	A	T	1.390e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1453390	3L_1453390_SNP [dm3] 3L_1453390_SNP [dm6]	A	G	1.397e^-4	1	INTRON Ptp61F
2L	3119307	2L_3119307_SNP [dm3] 2L_3119307_SNP [dm6]	C	T	1.419e^-4	1	INTRON toc
3R	14362935	3R_14362935_SNP [dm3] 3R_18537213_SNP [dm6]	G	A	1.432e^-4	1	INTRON fru
2L	19469132	2L_19469132_SNP [dm3] 2L_19469132_SNP [dm6]	T	A	1.466e^-4	1	DOWNSTREAM CR45723 EXON CR45722
2L	2308447	2L_2308447_SNP [dm3] 2L_2308447_SNP [dm6]	C	A	1.477e^-4	1	NON_SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
2L	13295304	2L_13295304_SNP [dm3] 2L_13295304_SNP [dm6]	T	A	1.481e^-4	1	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_dl
2L	8926181	2L_8926181_SNP [dm3] 2L_8926181_SNP [dm6]	G	A	1.525e^-4	1	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7006932	2L_7006932_SNP [dm3] 2L_7006932_SNP [dm6]	A	T	1.527e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23893787	3R_23893787_SNP [dm3] 3R_28068065_SNP [dm6]	A	G	1.529e^-4	1	INTRON CG34362
2L	15440418	2L_15440418_SNP [dm3] 2L_15440418_SNP [dm6]	T	A	1.529e^-4	1	INTERGENIC
3L	7486383	3L_7486383_SNP [dm3] 3L_7493283_SNP [dm6]	C	T	1.536e^-4	1	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
2R	19895811	2R_19895811_SNP [dm3] 2R_24008288_SNP [dm6]	A	G	1.554e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	57096	2L_57096_SNP [dm3] 2L_57096_SNP [dm6]	T	C	1.556e^-4	1	INTRON Cda5
2L	64034	2L_64034_SNP [dm3] 2L_64034_SNP [dm6]	G	T	1.569e^-4	1	INTRON Cda5
2R	1618225	2R_1618225_SNP [dm3] 2R_5730720_SNP [dm6]	T	G	1.576e^-4	1	INTERGENIC	transposable element FlyBase
2L	243824	2L_243824_SNP [dm3] 2L_243824_SNP [dm6]	A	G	1.600e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	16654547	2R_16654547_SNP [dm3] 2R_20767042_SNP [dm6]	A	G	1.624e^-4	1	DOWNSTREAM CR44665 EXON CR44665
2R	6645383	2R_6645383_SNP [dm3] 2R_10757878_SNP [dm6]	G	T	1.626e^-4	1	INTRON CG33144
2R	6645385	2R_6645385_INS [dm3] 2R_10757880_INS [dm6]	A	TT	1.626e^-4	1	INTRON CG33144
2R	13417290	2R_13417290_SNP [dm3] 2R_17529785_SNP [dm6]	A	C	1.627e^-4	1	INTRON Patronin
2L	1087400	2L_1087400_SNP [dm3] 2L_1087400_SNP [dm6]	T	A	1.634e^-4	1	INTRON CG4629
2L	12395584	2L_12395584_SNP [dm3] 2L_12395584_SNP [dm6]	C	T	1.667e^-4	1	INTRON bru-2
2R	7369073	2R_7369073_SNP [dm3] 2R_11481568_SNP [dm6]	A	G	1.675e^-4	1	INTRON inv
3R	25520570	3R_25520570_SNP [dm3] 3R_29694848_SNP [dm6]	C	A	1.695e^-4	1	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	16067185	3R_16067185_SNP [dm3] 3R_20241463_SNP [dm6]	G	A	1.720e^-4	1	INTRON Nlg4
2L	31003	2L_31003_SNP [dm3] 2L_31003_SNP [dm6]	G	C	1.740e^-4	1	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	33256	2L_33256_SNP [dm3] 2L_33256_SNP [dm6]	G	T	1.740e^-4	1	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	39030	2L_39030_DEL [dm3] 2L_39030_DEL [dm6]	TCTGTA	T	1.740e^-4	1	INTRON Cda5
2L	42850	2L_42850_SNP [dm3] 2L_42850_SNP [dm6]	A	T	1.740e^-4	1	INTRON Cda5
2L	39983	2L_39983_INS [dm3] 2L_39983_INS [dm6]	T	TCACGTATT	1.753e^-4	1	INTRON Cda5
2R	6645375	2R_6645375_SNP [dm3] 2R_10757870_SNP [dm6]	A	T	1.756e^-4	1	INTRON CG33144
2R	1393759	2R_1393759_SNP [dm3] 2R_5506254_SNP [dm6]	G	A	1.761e^-4	1	SYNONYMOUS_CODING TpnC4 INTRON CG30438
3L	14100942	3L_14100942_SNP [dm3] 3L_14107842_SNP [dm6]	A	T	1.772e^-4	1	UTR_5_PRIME Sox21a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	14910748	X_14910748_SNP [dm3] X_15016715_SNP [dm6]	C	A	1.777e^-4	1	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	7031598	3L_7031598_SNP [dm3] 3L_7038498_SNP [dm6]	G	A	1.788e^-4	1	INTRON Mp
2L	15032489	2L_15032489_SNP [dm3] 2L_15032489_SNP [dm6]	C	T	1.793e^-4	1	UPSTREAM CG31832 INTRON GABA-B-R1
2L	15032490	2L_15032490_SNP [dm3] 2L_15032490_SNP [dm6]	T	G	1.793e^-4	1	UPSTREAM CG31832 INTRON GABA-B-R1
X	16047044	X_16047044_SNP [dm3] X_16153011_SNP [dm6]	T	G	1.808e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23893796	3R_23893796_INS [dm3] 3R_28068074_INS [dm6]	C	CT	1.815e^-4	1	INTRON CG34362
2L	2794389	2L_2794389_SNP [dm3] 2L_2794389_SNP [dm6]	C	T	1.815e^-4	1	INTRON Syt1
X	16907910	X_16907910_SNP [dm3] X_17013877_SNP [dm6]	T	A	1.815e^-4	1	INTRON CG45002
3L	15884048	3L_15884048_SNP [dm3] 3L_15890948_SNP [dm6]	T	C	1.826e^-4	1	INTRON pHCl
X	3785341	X_3785341_SNP [dm3] X_3891308_SNP [dm6]	A	G	1.833e^-4	1	DOWNSTREAM CG15239 & 1 other INTERGENIC
3L	7486299	3L_7486299_SNP [dm3] 3L_7493199_SNP [dm6]	G	A	1.838e^-4	1	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
X	6838450	X_6838450_SNP [dm3] X_6944417_SNP [dm6]	C	T	1.842e^-4	1	INTRON CG14431
2L	2898676	2L_2898676_DEL [dm3] 2L_2898676_DEL [dm6]	AA	A	1.855e^-4	1	INTRON lilli	TF binding site BDTNP1_TFBS_dl
2L	699141	2L_699141_SNP [dm3] 2L_699141_SNP [dm6]	C	A	1.870e^-4	1	INTRON ds
3R	6322801	3R_6322801_SNP [dm3] 3R_10497079_SNP [dm6]	T	C	1.883e^-4	1	INTERGENIC
X	18644040	X_18644040_SNP [dm3] X_18750007_SNP [dm6]	G	C	1.888e^-4	1	INTERGENIC
2L	15437771	2L_15437771_SNP [dm3] 2L_15437771_SNP [dm6]	A	C	1.909e^-4	1	INTERGENIC
X	17735318	X_17735318_SNP [dm3] X_17841285_SNP [dm6]	A	T	1.911e^-4	1	UTR_3_PRIME CG6398 UPSTREAM e_y_1
2R	14347505	2R_14347505_SNP [dm3] 2R_18460000_SNP [dm6]	A	T	1.967e^-4	1	NON_SYNONYMOUS_CODING CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3655872	2L_3655872_SNP [dm3] 2L_3655872_SNP [dm6]	A	C	1.986e^-4	1	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	172063	2L_172063_SNP [dm3] 2L_172063_SNP [dm6]	C	T	1.986e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7088	2L_7088_SNP [dm3] 2L_7088_SNP [dm6]	A	T	2.012e^-4	1	UPSTREAM CG11023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17738157	X_17738157_SNP [dm3] X_17844124_SNP [dm6]	C	T	2.050e^-4	1	SYNONYMOUS_CODING CG8142 UPSTREAM Ucp4A DOWNSTREAM e_y_1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	172459	2L_172459_SNP [dm3] 2L_172459_SNP [dm6]	T	G	2.082e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2838241	X_2838241_SNP [dm3] X_2944208_SNP [dm6]	A	G	2.087e^-4	1	SYNONYMOUS_CODING CG14422 INTRON kirre	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_HSA
2R	9661554	2R_9661554_SNP [dm3] 2R_13774049_SNP [dm6]	A	G	2.094e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2L	13328876	2L_13328876_SNP [dm3] 2L_13328876_SNP [dm6]	T	C	2.126e^-4	1	INTRON CG43778
2R	14189800	2R_14189800_SNP [dm3] 2R_18302295_SNP [dm6]	C	A	2.131e^-4	1	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	14189801	2R_14189801_SNP [dm3] 2R_18302296_SNP [dm6]	C	A	2.131e^-4	1	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
2L	1925642	2L_1925642_SNP [dm3] 2L_1925642_SNP [dm6]	T	C	2.131e^-4	1	INTRON CG7337
3R	11080202	3R_11080202_SNP [dm3] 3R_15254480_SNP [dm6]	G	A	2.142e^-4	1	INTRON CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18866809	X_18866809_INS [dm3] X_18972776_INS [dm6]	T	TT	2.178e^-4	1	INTRON CG43759
2L	246001	2L_246001_SNP [dm3] 2L_246001_SNP [dm6]	T	C	2.204e^-4	1	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	13952156	3R_13952156_DEL [dm3] 3R_18126434_DEL [dm6]	CC	C	2.214e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	163611	2L_163611_SNP [dm3] 2L_163611_SNP [dm6]	T	G	2.218e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15111639	X_15111639_SNP [dm3] X_15217606_SNP [dm6]	A	T	2.227e^-4	1	INTERGENIC
3R	14461441	3R_14461441_SNP [dm3] 3R_18635719_SNP [dm6]	A	G	2.232e^-4	1	INTRON qin & 1 other
2L	171719	2L_171719_SNP [dm3] 2L_171719_SNP [dm6]	T	C	2.247e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7486595	3L_7486595_SNP [dm3] 3L_7493495_SNP [dm6]	A	T	2.248e^-4	1	DOWNSTREAM Cyp4d8 & 1 other INTERGENIC
2R	16433843	2R_16433843_SNP [dm3] 2R_20546338_SNP [dm6]	T	A	2.250e^-4	1	DOWNSTREAM CG30148 INTERGENIC
2L	2792336	2L_2792336_SNP [dm3] 2L_2792336_SNP [dm6]	G	T	2.271e^-4	1	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
3L	14100916	3L_14100916_SNP [dm3] 3L_14107816_SNP [dm6]	A	G	2.272e^-4	1	UTR_5_PRIME Sox21a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	937894	3L_937894_SNP [dm3] 3L_937894_SNP [dm6]	G	A	2.287e^-4	1	INTRON Glut1
2L	16572554	2L_16572554_SNP [dm3] 2L_16572554_SNP [dm6]	T	G	2.291e^-4	1	INTRON CG42389
2L	8232416	2L_8232416_SNP [dm3] 2L_8232416_SNP [dm6]	A	G	2.298e^-4	1	INTRON Pvr
3L	1072705	3L_1072705_SNP [dm3] 3L_1072705_SNP [dm6]	T	C	2.299e^-4	1	INTRON bab1
2L	11916990	2L_11916990_SNP [dm3] 2L_11916990_SNP [dm6]	A	G	2.300e^-4	1	INTRON Pde1c
3L	13422144	3L_13422144_SNP [dm3] 3L_13429044_SNP [dm6]	A	G	2.318e^-4	1	UTR_3_PRIME CG10713
X	8151464	X_8151464_SNP [dm3] X_8257431_SNP [dm6]	G	T	2.334e^-4	1	INTRON CG1632
2R	7368907	2R_7368907_SNP [dm3] 2R_11481402_SNP [dm6]	T	C	2.344e^-4	1	INTRON inv
2R	7368927	2R_7368927_SNP [dm3] 2R_11481422_SNP [dm6]	A	T	2.344e^-4	1	INTRON inv
2L	57088	2L_57088_SNP [dm3] 2L_57088_SNP [dm6]	G	T	2.346e^-4	1	INTRON Cda5
3R	26409735	3R_26409735_SNP [dm3] 3R_30584013_SNP [dm6]	T	C	2.373e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3L	7031606	3L_7031606_SNP [dm3] 3L_7038506_SNP [dm6]	T	A	2.375e^-4	1	INTRON Mp
3R	21889393	3R_21889393_SNP [dm3] 3R_26063671_SNP [dm6]	C	G	2.379e^-4	1	UPSTREAM CG14551 INTERGENIC
3L	13737793	3L_13737793_SNP [dm3] 3L_13744693_SNP [dm6]	G	A	2.384e^-4	1	INTRON bru-3
2L	9517811	2L_9517811_SNP [dm3] 2L_9517811_SNP [dm6]	T	C	2.400e^-4	1	SYNONYMOUS_CODING CG33298
3L	1234208	3L_1234208_SNP [dm3] 3L_1234208_SNP [dm6]	A	G	2.403e^-4	1	SYNONYMOUS_CODING CG33966 DOWNSTREAM CG33965
X	17396860	X_17396860_SNP [dm3] X_17502827_SNP [dm6]	C	T	2.404e^-4	1	INTRON CG43658
X	19352357	X_19352357_SNP [dm3] X_19458324_SNP [dm6]	T	A	2.425e^-4	1	INTRON kek5	TF binding site BDTNP1_TFBS_da
2R	11900136	2R_11900136_SNP [dm3] 2R_16012631_SNP [dm6]	A	C	2.436e^-4	1	INTRON CG8389	TF binding site BDTNP1_TFBS_sna
3R	25075391	3R_25075391_DEL [dm3] 3R_29249669_DEL [dm6]	GAATTAAATAC...	G	2.437e^-4	1	UPSTREAM SP1029 INTRON SP1029
3R	25075403	3R_25075403_SNP [dm3] 3R_29249681_SNP [dm6]	A	C	2.437e^-4	1	UPSTREAM SP1029 INTRON SP1029
3R	25075406	3R_25075406_DEL [dm3] 3R_29249684_DEL [dm6]	GTTAACTTGTTGTGATTTCT...	G	2.437e^-4	1	UPSTREAM SP1029 INTRON SP1029
3R	25487993	3R_25487993_SNP [dm3] 3R_29662271_SNP [dm6]	A	G	2.445e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2964349	2L_2964349_SNP [dm3] 2L_2964349_SNP [dm6]	C	T	2.452e^-4	1	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16751805	2L_16751805_SNP [dm3] 2L_16751805_SNP [dm6]	T	C	2.452e^-4	1	UTR_3_PRIME CG17912
2L	244079	2L_244079_DEL [dm3] 2L_244079_DEL [dm6]	GCAGTGCA	G	2.452e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15294762	3R_15294762_SNP [dm3] 3R_19469040_SNP [dm6]	T	G	2.461e^-4	1	INTRON Dys	TF binding site mE1_TFBS_inv
2L	17209930	2L_17209930_SNP [dm3] 2L_17209930_SNP [dm6]	A	G	2.462e^-4	1	INTRON beat-IIIc
2L	35976	2L_35976_SNP [dm3] 2L_35976_SNP [dm6]	C	T	2.467e^-4	1	SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	758231	3L_758231_SNP [dm3] 3L_758231_SNP [dm6]	T	C	2.499e^-4	1	INTERGENIC
3R	12976317	3R_12976317_SNP [dm3] 3R_17150595_SNP [dm6]	C	T	2.510e^-4	1	UTR_5_PRIME CG5285 DOWNSTREAM Det	TF binding site mE1_TFBS_ttk
2L	10481846	2L_10481846_SNP [dm3] 2L_10481846_SNP [dm6]	T	C	2.510e^-4	1	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
3L	758818	3L_758818_SNP [dm3] 3L_758818_SNP [dm6]	T	C	2.513e^-4	1	INTERGENIC
3R	24988908	3R_24988908_SNP [dm3] 3R_29163186_SNP [dm6]	C	T	2.531e^-4	1	INTRON CG11897
3L	13634505	3L_13634505_SNP [dm3] 3L_13641405_SNP [dm6]	A	C	2.539e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	12708178	2R_12708178_SNP [dm3] 2R_16820673_SNP [dm6]	T	C	2.543e^-4	1	INTERGENIC
2R	19408652	2R_19408652_SNP [dm3] 2R_23521129_SNP [dm6]	T	C	2.568e^-4	1	INTRON RabX1
3L	5004924	3L_5004924_SNP [dm3] 3L_5004924_SNP [dm6]	C	T	2.582e^-4	1	INTRON Con
3L	9082921	3L_9082921_SNP [dm3] 3L_9089821_SNP [dm6]	G	A	2.584e^-4	1	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13641759	X_13641759_SNP [dm3] X_13747726_SNP [dm6]	T	A	2.601e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13289664	3L_13289664_SNP [dm3] 3L_13296564_SNP [dm6]	T	A	2.610e^-4	1	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	222410	2L_222410_SNP [dm3] 2L_222410_SNP [dm6]	A	G	2.626e^-4	1	UPSTREAM kis INTRON kis	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	19893907	2R_19893907_SNP [dm3] 2R_24006384_SNP [dm6]	A	C	2.629e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17224015	2L_17224015_SNP [dm3] 2L_17224015_SNP [dm6]	A	C	2.639e^-4	1	INTRON beat-IIIc	TF binding site mE1_TFBS_cad
X	15552824	X_15552824_SNP [dm3] X_15658791_SNP [dm6]	T	A	2.641e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	5148746	3L_5148746_SNP [dm3] 3L_5155646_SNP [dm6]	T	C	2.681e^-4	1	DOWNSTREAM Srp54k & 1 other INTERGENIC
3L	13153625	3L_13153625_SNP [dm3] 3L_13160525_SNP [dm6]	G	C	2.682e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19440295	2L_19440295_SNP [dm3] 2L_19440295_SNP [dm6]	A	G	2.708e^-4	1	INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	32124	2L_32124_SNP [dm3] 2L_32124_SNP [dm6]	C	A	2.711e^-4	1	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	14190383	3R_14190383_SNP [dm3] 3R_18364661_SNP [dm6]	C	A	2.712e^-4	1	NON_SYNONYMOUS_CODING WRNexo DOWNSTREAM CG7669
3L	17875873	3L_17875873_SNP [dm3] 3L_17882773_SNP [dm6]	C	T	2.737e^-4	1	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
2R	6469661	2R_6469661_SNP [dm3] 2R_10582156_SNP [dm6]	T	A	2.741e^-4	1	INTRON psq	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	10481906	2L_10481906_SNP [dm3] 2L_10481906_SNP [dm6]	C	A	2.748e^-4	1	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
3R	10262661	3R_10262661_SNP [dm3] 3R_14436939_SNP [dm6]	C	A	2.748e^-4	1	INTRON cv-c
2L	15439252	2L_15439252_SNP [dm3] 2L_15439252_SNP [dm6]	G	T	2.755e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	24132787	3R_24132787_SNP [dm3] 3R_28307065_SNP [dm6]	G	A	2.765e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7829687	2L_7829687_SNP [dm3] 2L_7829687_SNP [dm6]	T	C	2.768e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7829697	2L_7829697_SNP [dm3] 2L_7829697_SNP [dm6]	G	A	2.768e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7829710	2L_7829710_SNP [dm3] 2L_7829710_SNP [dm6]	A	T	2.768e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11304914	2R_11304914_SNP [dm3] 2R_15417409_SNP [dm6]	G	A	2.769e^-4	1	INTRON CG43729
2L	126531	2L_126531_SNP [dm3] 2L_126531_SNP [dm6]	G	A	2.773e^-4	1	INTRON CG11455 & 1 other
3L	1248392	3L_1248392_SNP [dm3] 3L_1248392_SNP [dm6]	C	A	2.776e^-4	1	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	835679	2R_835679_SNP [dm3] 2R_4948174_SNP [dm6]	A	G	2.780e^-4	1	INTRON Ir41a
3R	8394942	3R_8394942_SNP [dm3] 3R_12569220_SNP [dm6]	G	C	2.782e^-4	1	INTRON Octbeta2R
2L	60528	2L_60528_SNP [dm3] 2L_60528_SNP [dm6]	C	A	2.795e^-4	1	INTRON Cda5	transposable element FlyBase
2R	13785711	2R_13785711_DEL [dm3] 2R_17898206_DEL [dm6]	AA	A	2.812e^-4	1	INTRON Elk
2L	15433059	2L_15433059_SNP [dm3] 2L_15433059_SNP [dm6]	T	C	2.822e^-4	1	UPSTREAM CG4161 INTERGENIC
2L	9933073	2L_9933073_SNP [dm3] 2L_9933073_SNP [dm6]	T	A	2.832e^-4	1	INTRON Cpr30F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13634502	3L_13634502_SNP [dm3] 3L_13641402_SNP [dm6]	A	G	2.836e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	17584981	2R_17584981_SNP [dm3] 2R_21697476_SNP [dm6]	A	T	2.844e^-4	1	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
2L	39037	2L_39037_INS [dm3] 2L_39037_INS [dm6]	A	AGAGCGTAAGAGCGGT...	2.845e^-4	1	INTRON Cda5
2L	153797	2L_153797_SNP [dm3] 2L_153797_SNP [dm6]	A	G	2.861e^-4	1	SYNONYMOUS_CODING CG3709 UPSTREAM CG42399 INTRON CG11455	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	11091975	2R_11091975_SNP [dm3] 2R_15204470_SNP [dm6]	A	G	2.864e^-4	1	UPSTREAM Ir51a DOWNSTREAM CG11807 INTERGENIC
3L	12769364	3L_12769364_INS [dm3] 3L_12776264_INS [dm6]	C	CAGATACTTCATA...	2.875e^-4	1	CODON_INSERTION CG32106
3L	10012418	3L_10012418_SNP [dm3] 3L_10019318_SNP [dm6]	A	C	2.877e^-4	1	INTRON dpr6
3L	17931876	3L_17931876_SNP [dm3] 3L_17938776_SNP [dm6]	A	G	2.877e^-4	1	INTRON CG43174
2L	6809268	2L_6809268_SNP [dm3] 2L_6809268_SNP [dm6]	T	C	2.879e^-4	1	INTERGENIC
3L	5012902	3L_5012902_SNP [dm3] 3L_5012902_SNP [dm6]	A	G	2.883e^-4	1	UPSTREAM CG12027 INTRON Con
3L	9312479	3L_9312479_SNP [dm3] 3L_9319379_SNP [dm6]	T	G	2.898e^-4	1	INTERGENIC
3R	16045399	3R_16045399_SNP [dm3] 3R_20219677_SNP [dm6]	G	T	2.937e^-4	1	INTRON Nlg4
2L	112627	2L_112627_SNP [dm3] 2L_112627_SNP [dm6]	A	T	2.941e^-4	1	INTRON Sam-S
2R	14095618	2R_14095618_SNP [dm3] 2R_18208113_SNP [dm6]	C	T	2.949e^-4	1	SYNONYMOUS_CODING CG30114
X	9332270	X_9332270_SNP [dm3] X_9438237_SNP [dm6]	T	C	2.953e^-4	1	INTRON mgl
2L	8980880	2L_8980880_SNP [dm3] 2L_8980880_SNP [dm6]	A	G	2.960e^-4	1	SYNONYMOUS_CODING CG18662 INTRON CG13101
3R	11045705	3R_11045705_SNP [dm3] 3R_15219983_SNP [dm6]	G	A	2.980e^-4	1	SYNONYMOUS_CODING CG12241	TF binding site mE1_TFBS_cad
2L	42709	2L_42709_SNP [dm3] 2L_42709_SNP [dm6]	G	A	2.991e^-4	1	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25798362	3R_25798362_SNP [dm3] 3R_29972640_SNP [dm6]	C	A	3.007e^-4	1	INTERGENIC
2L	24710	2L_24710_SNP [dm3] 2L_24710_SNP [dm6]	T	A	3.022e^-4	1	DOWNSTREAM CR43609 & 1 other INTRON Ir21a
2L	9547090	2L_9547090_SNP [dm3] 2L_9547090_SNP [dm6]	C	T	3.038e^-4	1	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp
2R	10009307	2R_10009307_SNP [dm3] 2R_14121802_SNP [dm6]	C	T	3.055e^-4	1	INTRON Prosap
2L	2964365	2L_2964365_DEL [dm3] 2L_2964365_DEL [dm6]	CAATTTAATGTAGAACTTAC...	C	3.072e^-4	1	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4757291	X_4757291_SNP [dm3] X_4863258_SNP [dm6]	C	A	3.078e^-4	1	INTRON CG42594
X	18159946	X_18159946_SNP [dm3] X_18265913_SNP [dm6]	A	T	3.078e^-4	1	INTERGENIC
3L	4235500	3L_4235500_SNP [dm3] 3L_4235500_SNP [dm6]	G	A	3.083e^-4	1	INTRON ImpL2
2L	1185701	2L_1185701_INS [dm3] 2L_1185701_INS [dm6]	T	TAATTCACAATT...	3.090e^-4	1	UPSTREAM CG5001 DOWNSTREAM Tgt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	17974361	3R_17974361_SNP [dm3] 3R_22148639_SNP [dm6]	C	A	3.091e^-4	1	INTRON SKIP
3L	10224376	3L_10224376_DEL [dm3] 3L_10231276_DEL [dm6]	TG	T	3.097e^-4	1	INTERGENIC
X	4514313	X_4514313_SNP [dm3] X_4620280_SNP [dm6]	C	T	3.103e^-4	1	NON_SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	26409669	3R_26409669_SNP [dm3] 3R_30583947_SNP [dm6]	T	C	3.116e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409702	3R_26409702_SNP [dm3] 3R_30583980_SNP [dm6]	C	T	3.116e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
X	15552828	X_15552828_SNP [dm3] X_15658795_SNP [dm6]	C	A	3.120e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	13634136	3L_13634136_SNP [dm3] 3L_13641036_SNP [dm6]	G	A	3.123e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	19305315	3R_19305315_INS [dm3] 3R_23479593_INS [dm6]	A	AA	3.125e^-4	1	INTERGENIC
3R	27344902	3R_27344902_SNP [dm3] 3R_31519180_SNP [dm6]	T	C	3.142e^-4	1	DOWNSTREAM CR45573 INTERGENIC
2L	8742117	2L_8742117_SNP [dm3] 2L_8742117_SNP [dm6]	T	A	3.170e^-4	1	INTERGENIC
2L	17223840	2L_17223840_SNP [dm3] 2L_17223840_SNP [dm6]	G	C	3.178e^-4	1	INTRON beat-IIIc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	24439	2L_24439_SNP [dm3] 2L_24439_SNP [dm6]	T	G	3.178e^-4	1	DOWNSTREAM CR43609 & 1 other INTRON Ir21a	transposable element FlyBase
2R	20523891	2R_20523891_SNP [dm3] 2R_24636368_SNP [dm6]	T	G	3.181e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	9731178	2L_9731178_INS [dm3] 2L_9731178_INS [dm6]	T	TTT	3.201e^-4	1	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	14572517	X_14572517_SNP [dm3] X_14678484_SNP [dm6]	C	G	3.205e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7797077	2L_7797077_SNP [dm3] 2L_7797077_SNP [dm6]	A	T	3.221e^-4	1	SYNONYMOUS_CODING Herp DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7990659	X_7990659_SNP [dm3] X_8096626_SNP [dm6]	T	A	3.223e^-4	1	UTR_3_PRIME CG2258
3R	15406743	3R_15406743_DEL [dm3] 3R_19581021_DEL [dm6]	CCCACC	C	3.239e^-4	1	INTRON Dys
X	15552926	X_15552926_SNP [dm3] X_15658893_SNP [dm6]	C	T	3.253e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	26555595	3R_26555595_SNP [dm3] 3R_30729873_SNP [dm6]	A	T	3.263e^-4	1	UTR_3_PRIME CG11313	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2475234	3L_2475234_SNP [dm3] 3L_2475234_SNP [dm6]	C	T	3.267e^-4	1	NON_SYNONYMOUS_CODING CG16762 INTRON CG45186	TF binding site mE1_TFBS_HSA
2R	10009320	2R_10009320_SNP [dm3] 2R_14121815_SNP [dm6]	G	T	3.309e^-4	1	INTRON Prosap
2R	12342521	2R_12342521_SNP [dm3] 2R_16455016_SNP [dm6]	C	T	3.309e^-4	1	INTERGENIC
2R	13356851	2R_13356851_SNP [dm3] 2R_17469346_SNP [dm6]	C	T	3.311e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC
2R	13356887	2R_13356887_SNP [dm3] 2R_17469382_SNP [dm6]	C	T	3.311e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3208060	2R_3208060_SNP [dm3] 2R_7320555_SNP [dm6]	G	A	3.318e^-4	1	UTR_3_PRIME Dscam1
3R	9946544	3R_9946544_SNP [dm3] 3R_14120822_SNP [dm6]	T	C	3.321e^-4	1	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15324261	3R_15324261_SNP [dm3] 3R_19498539_SNP [dm6]	T	G	3.345e^-4	1	INTRON Dys	TF binding site mE1_TFBS_Trl
X	19511963	X_19511963_SNP [dm3] X_19617930_SNP [dm6]	C	T	3.353e^-4	1	UTR_5_PRIME CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9231511	2L_9231511_SNP [dm3] 2L_9231511_SNP [dm6]	T	C	3.356e^-4	1	INTRON tai
2R	12372354	2R_12372354_SNP [dm3] 2R_16484849_SNP [dm6]	T	C	3.360e^-4	1	NON_SYNONYMOUS_CODING CG15712	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1245136	2L_1245136_SNP [dm3] 2L_1245136_SNP [dm6]	C	T	3.366e^-4	1	INTERGENIC
3R	9561811	3R_9561811_SNP [dm3] 3R_13736089_SNP [dm6]	T	G	3.374e^-4	1	INTRON CG34383
2L	1695390	2L_1695390_SNP [dm3] 2L_1695390_SNP [dm6]	A	G	3.378e^-4	1	INTRON chinmo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15552592	X_15552592_DEL [dm3] X_15658559_DEL [dm6]	TTAT	T	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552639	X_15552639_SNP [dm3] X_15658606_SNP [dm6]	A	G	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552647	X_15552647_SNP [dm3] X_15658614_SNP [dm6]	G	A	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552675	X_15552675_SNP [dm3] X_15658642_SNP [dm6]	G	A	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552704	X_15552704_INS [dm3] X_15658671_INS [dm6]	A	ATGTACAAGCAGCA...	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552766	X_15552766_SNP [dm3] X_15658733_SNP [dm6]	C	T	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	15552842	X_15552842_SNP [dm3] X_15658809_SNP [dm6]	T	A	3.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2R	19752074	2R_19752074_SNP [dm3] 2R_23864551_SNP [dm6]	A	G	3.389e^-4	1	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	25286369	3R_25286369_SNP [dm3] 3R_29460647_SNP [dm6]	T	C	3.404e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26886035	3R_26886035_SNP [dm3] 3R_31060313_SNP [dm6]	G	A	3.420e^-4	1	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	13571163	3R_13571163_SNP [dm3] 3R_17745441_SNP [dm6]	A	G	3.431e^-4	1	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21331792	3R_21331792_SNP [dm3] 3R_25506070_SNP [dm6]	C	T	3.461e^-4	1	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC
3L	16471426	3L_16471426_SNP [dm3] 3L_16478326_SNP [dm6]	G	A	3.465e^-4	1	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	24624713	3R_24624713_SNP [dm3] 3R_28798991_SNP [dm6]	G	T	3.470e^-4	1	INTERGENIC
X	21899675	X_21899675_SNP [dm3] X_22497839_SNP [dm6]	T	C	3.476e^-4	1	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1355368	X_1355368_SNP [dm3] X_1461335_SNP [dm6]	T	A	3.479e^-4	1	NON_SYNONYMOUS_CODING CG14787 UPSTREAM CG14786 DOWNSTREAM Ns3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1606533	2R_1606533_SNP [dm3] 2R_5719028_SNP [dm6]	C	T	3.487e^-4	1	INTRON ap
X	15552640	X_15552640_SNP [dm3] X_15658607_SNP [dm6]	C	A	3.519e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	21374160	3R_21374160_SNP [dm3] 3R_25548438_SNP [dm6]	C	T	3.520e^-4	1	INTRON msi
2L	16572540	2L_16572540_SNP [dm3] 2L_16572540_SNP [dm6]	A	C	3.521e^-4	1	INTRON CG42389
3L	15884159	3L_15884159_INS [dm3] 3L_15891059_INS [dm6]	T	TACTATACAT	3.527e^-4	1	INTRON pHCl
3L	7486296	3L_7486296_SNP [dm3] 3L_7493196_SNP [dm6]	A	T	3.529e^-4	1	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
X	17737623	X_17737623_SNP [dm3] X_17843590_SNP [dm6]	G	A	3.545e^-4	1	SYNONYMOUS_CODING CG8142 DOWNSTREAM e_y_1	TF binding site mE1_TFBS_HSA
3R	17773204	3R_17773204_SNP [dm3] 3R_21947482_SNP [dm6]	G	A	3.546e^-4	1	INTERGENIC
2L	655507	2L_655507_SNP [dm3] 2L_655507_SNP [dm6]	C	T	3.561e^-4	1	NON_SYNONYMOUS_CODING ds
2L	242137	2L_242137_SNP [dm3] 2L_242137_SNP [dm6]	G	A	3.565e^-4	1	SYNONYMOUS_CODING kis DOWNSTREAM mir-965	TF binding site mE1_TFBS_chinmo
2L	64064	2L_64064_INS [dm3] 2L_64064_INS [dm6]	A	ATCAATC	3.571e^-4	1	INTRON Cda5
3L	21036462	3L_21036462_SNP [dm3] 3L_21043362_SNP [dm6]	G	A	3.575e^-4	1	INTRON siz
3R	20377246	3R_20377246_SNP [dm3] 3R_24551524_SNP [dm6]	A	G	3.579e^-4	1	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15806	2L_15806_SNP [dm3] 2L_15806_SNP [dm6]	T	C	3.592e^-4	1	INTRON l_2_gl
X	15552822	X_15552822_SNP [dm3] X_15658789_SNP [dm6]	G	A	3.610e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2R	12342718	2R_12342718_SNP [dm3] 2R_16455213_SNP [dm6]	A	T	3.620e^-4	1	INTERGENIC
2R	12342750	2R_12342750_SNP [dm3] 2R_16455245_SNP [dm6]	A	T	3.620e^-4	1	INTERGENIC
2R	10213666	2R_10213666_SNP [dm3] 2R_14326161_SNP [dm6]	T	G	3.643e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_inv
2R	10213680	2R_10213680_SNP [dm3] 2R_14326175_SNP [dm6]	A	G	3.643e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_inv
2R	10213687	2R_10213687_SNP [dm3] 2R_14326182_SNP [dm6]	G	A	3.643e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_inv
X	8151446	X_8151446_SNP [dm3] X_8257413_SNP [dm6]	A	T	3.655e^-4	1	INTRON CG1632
X	8151489	X_8151489_SNP [dm3] X_8257456_SNP [dm6]	T	A	3.655e^-4	1	INTRON CG1632
X	8151490	X_8151490_INS [dm3] X_8257457_INS [dm6]	T	TC	3.655e^-4	1	INTRON CG1632
X	8151495	X_8151495_SNP [dm3] X_8257462_SNP [dm6]	A	C	3.655e^-4	1	INTRON CG1632
3L	8044386	3L_8044386_SNP [dm3] 3L_8051286_SNP [dm6]	T	A	3.672e^-4	1	UTR_3_PRIME nmo DOWNSTREAM nmo
3L	8044395	3L_8044395_SNP [dm3] 3L_8051295_SNP [dm6]	A	T	3.672e^-4	1	UTR_3_PRIME nmo DOWNSTREAM nmo
2L	10868837	2L_10868837_SNP [dm3] 2L_10868837_SNP [dm6]	C	T	3.674e^-4	1	INTERGENIC
3R	11442197	3R_11442197_SNP [dm3] 3R_15616475_SNP [dm6]	C	A	3.682e^-4	1	INTERGENIC
X	14473776	X_14473776_SNP [dm3] X_14579743_SNP [dm6]	G	T	3.693e^-4	1	UPSTREAM CG14414 INTERGENIC
2R	2900025	2R_2900025_SNP [dm3] 2R_7012520_SNP [dm6]	A	G	3.696e^-4	1	UTR_5_PRIME Tsp42Ee UPSTREAM Tsp42Ed INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11093773	2R_11093773_SNP [dm3] 2R_15206268_SNP [dm6]	A	G	3.718e^-4	1	DOWNSTREAM row EXON Ir51a
3R	16822748	3R_16822748_SNP [dm3] 3R_20997026_SNP [dm6]	C	G	3.748e^-4	1	INTRON Calx
3L	13634112	3L_13634112_SNP [dm3] 3L_13641012_SNP [dm6]	T	C	3.774e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	1672430	2L_1672430_DEL [dm3] 2L_1672430_DEL [dm6]	TT	T	3.786e^-4	1	INTRON chinmo
3R	8761360	3R_8761360_SNP [dm3] 3R_12935638_SNP [dm6]	C	T	3.789e^-4	1	DOWNSTREAM beat-Vb INTERGENIC
2L	47087	2L_47087_DEL [dm3] 2L_47087_DEL [dm6]	TATCT	T	3.797e^-4	1	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8563318	2L_8563318_SNP [dm3] 2L_8563318_SNP [dm6]	T	C	3.809e^-4	1	INTRON Sema-1a
3R	6662995	3R_6662995_SNP [dm3] 3R_10837273_SNP [dm6]	T	C	3.813e^-4	1	INTRON Cad86C
2L	13686085	2L_13686085_SNP [dm3] 2L_13686085_SNP [dm6]	T	C	3.830e^-4	1	INTRON CG31814
2L	7022316	2L_7022316_SNP [dm3] 2L_7022316_SNP [dm6]	A	G	3.836e^-4	1	SYNONYMOUS_CODING Pcp INTRON ade3
X	16985775	X_16985775_SNP [dm3] X_17091742_SNP [dm6]	A	G	3.848e^-4	1	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15552834	X_15552834_SNP [dm3] X_15658801_SNP [dm6]	C	T	3.861e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	12288827	3L_12288827_SNP [dm3] 3L_12295727_SNP [dm6]	T	C	3.868e^-4	1	INTRON CG4328
2L	242336	2L_242336_SNP [dm3] 2L_242336_SNP [dm6]	A	G	3.875e^-4	1	UTR_5_PRIME kis DOWNSTREAM mir-965
2L	242798	2L_242798_SNP [dm3] 2L_242798_SNP [dm6]	A	C	3.875e^-4	1	UTR_5_PRIME kis DOWNSTREAM mir-965 INTRON kis
2L	243207	2L_243207_SNP [dm3] 2L_243207_SNP [dm6]	C	T	3.875e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	244076	2L_244076_INS [dm3] 2L_244076_INS [dm6]	A	AT	3.875e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	244088	2L_244088_SNP [dm3] 2L_244088_SNP [dm6]	A	G	3.875e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	244368	2L_244368_SNP [dm3] 2L_244368_SNP [dm6]	T	A	3.875e^-4	1	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	246173	2L_246173_SNP [dm3] 2L_246173_SNP [dm6]	G	A	3.875e^-4	1	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	7007087	2L_7007087_SNP [dm3] 2L_7007087_SNP [dm6]	T	C	3.880e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7007103	2L_7007103_SNP [dm3] 2L_7007103_SNP [dm6]	G	A	3.880e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12272543	2L_12272543_SNP [dm3] 2L_12272543_SNP [dm6]	G	A	3.883e^-4	1	INTRON aret
2R	14095695	2R_14095695_SNP [dm3] 2R_18208190_SNP [dm6]	G	C	3.886e^-4	1	NON_SYNONYMOUS_CODING CG30114
2L	3332863	2L_3332863_SNP [dm3] 2L_3332863_SNP [dm6]	G	A	3.893e^-4	1	UTR_5_PRIME CG15408 UTR_3_PRIME CG3285 DOWNSTREAM CG3285	TF binding site mE1_TFBS_cad
X	15553569	X_15553569_SNP [dm3] X_15659536_SNP [dm6]	T	C	3.895e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2R	18914361	2R_18914361_SNP [dm3] 2R_23026838_SNP [dm6]	T	C	3.898e^-4	1	INTRON twi & 1 other
2R	18914416	2R_18914416_SNP [dm3] 2R_23026893_SNP [dm6]	A	G	3.898e^-4	1	INTRON twi & 1 other
2R	18914426	2R_18914426_SNP [dm3] 2R_23026903_SNP [dm6]	A	C	3.898e^-4	1	INTRON twi & 1 other
2R	18914446	2R_18914446_SNP [dm3] 2R_23026923_SNP [dm6]	A	G	3.898e^-4	1	INTRON twi & 1 other
3R	16822752	3R_16822752_SNP [dm3] 3R_20997030_SNP [dm6]	T	C	3.903e^-4	1	INTRON Calx
2L	3664437	2L_3664437_SNP [dm3] 2L_3664437_SNP [dm6]	G	A	3.908e^-4	1	INTRON CG34340
3R	13673961	3R_13673961_SNP [dm3] 3R_17848239_SNP [dm6]	A	C	3.909e^-4	1	INTRON tinc
2L	9363395	2L_9363395_SNP [dm3] 2L_9363395_SNP [dm6]	T	C	3.913e^-4	1	UPSTREAM CR43404 INTERGENIC
X	9940493	X_9940493_SNP [dm3] X_10046460_SNP [dm6]	A	G	3.924e^-4	1	INTRON Cht6 EXON CR45185 & 1 other
2L	1693238	2L_1693238_SNP [dm3] 2L_1693238_SNP [dm6]	C	T	3.924e^-4	1	INTRON chinmo
2R	14914568	2R_14914568_SNP [dm3] 2R_19027063_SNP [dm6]	C	A	3.928e^-4	1	INTRON 5-HT1B
2R	14095626	2R_14095626_SNP [dm3] 2R_18208121_SNP [dm6]	G	C	3.934e^-4	1	NON_SYNONYMOUS_CODING CG30114
2L	244268	2L_244268_SNP [dm3] 2L_244268_SNP [dm6]	A	G	3.935e^-4	1	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9265555	2L_9265555_SNP [dm3] 2L_9265555_SNP [dm6]	A	G	3.960e^-4	1	INTRON Ggamma30A
3R	14833210	3R_14833210_SNP [dm3] 3R_19007488_SNP [dm6]	C	T	3.964e^-4	1	INTRON gukh
2L	208335	2L_208335_SNP [dm3] 2L_208335_SNP [dm6]	A	T	3.964e^-4	1	NON_SYNONYMOUS_CODING Tbc1d15-17
3R	25075196	3R_25075196_SNP [dm3] 3R_29249474_SNP [dm6]	G	A	3.969e^-4	1	UTR_5_PRIME SP1029 UPSTREAM SP1029 INTRON SP1029
2L	15439485	2L_15439485_SNP [dm3] 2L_15439485_SNP [dm6]	G	A	3.970e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14912441	2R_14912441_SNP [dm3] 2R_19024936_SNP [dm6]	C	T	3.986e^-4	1	SYNONYMOUS_CODING 5-HT1B	TF binding site mE1_TFBS_cad
3L	8667741	3L_8667741_SNP [dm3] 3L_8674641_SNP [dm6]	G	C	3.998e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19366175	2R_19366175_SNP [dm3] 2R_23478652_SNP [dm6]	T	C	4.001e^-4	1	INTRON CG43795
3R	11074533	3R_11074533_SNP [dm3] 3R_15248811_SNP [dm6]	T	G	4.008e^-4	1	SYNONYMOUS_CODING CG6499	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15552776	X_15552776_SNP [dm3] X_15658743_SNP [dm6]	A	T	4.040e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	2038791	2L_2038791_SNP [dm3] 2L_2038791_SNP [dm6]	T	G	4.042e^-4	1	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	14473331	X_14473331_SNP [dm3] X_14579298_SNP [dm6]	C	G	4.043e^-4	1	INTERGENIC
2R	18914424	2R_18914424_SNP [dm3] 2R_23026901_SNP [dm6]	T	A	4.047e^-4	1	INTRON twi & 1 other
2L	15833992	2L_15833992_INS [dm3] 2L_15833992_INS [dm6]	T	TACCAAATTGT...	4.062e^-4	1	DOWNSTREAM CR45368 & 1 other INTERGENIC
2L	21617454	2L_21617454_SNP [dm3] 2L_21617454_SNP [dm6]	T	G	4.064e^-4	1	INTRON CG2201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2964410	2L_2964410_SNP [dm3] 2L_2964410_SNP [dm6]	T	C	4.104e^-4	1	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13952124	3R_13952124_SNP [dm3] 3R_18126402_SNP [dm6]	G	A	4.105e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	46708	2L_46708_SNP [dm3] 2L_46708_SNP [dm6]	T	A	4.106e^-4	1	INTRON Cda5
3L	1253003	3L_1253003_SNP [dm3] 3L_1253003_SNP [dm6]	C	T	4.107e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15552859	X_15552859_SNP [dm3] X_15658826_SNP [dm6]	C	T	4.113e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	116946	2L_116946_SNP [dm3] 2L_116946_SNP [dm6]	T	G	4.144e^-4	1	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
2L	17224178	2L_17224178_SNP [dm3] 2L_17224178_SNP [dm6]	G	C	4.153e^-4	1	INTRON beat-IIIc
2R	9661535	2R_9661535_SNP [dm3] 2R_13774030_SNP [dm6]	A	G	4.170e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	12366207	2R_12366207_SNP [dm3] 2R_16478702_SNP [dm6]	C	T	4.178e^-4	1	INTERGENIC
3L	6348315	3L_6348315_INS [dm3] 3L_6355215_INS [dm6]	T	TCTATT	4.189e^-4	1	INTERGENIC
2R	3072319	2R_3072319_SNP [dm3] 2R_7184814_SNP [dm6]	T	A	4.201e^-4	1	NON_SYNONYMOUS_CODING CG30384 INTRON pk
2R	3072332	2R_3072332_SNP [dm3] 2R_7184827_SNP [dm6]	C	A	4.201e^-4	1	NON_SYNONYMOUS_CODING CG30384 INTRON pk
X	13641839	X_13641839_SNP [dm3] X_13747806_SNP [dm6]	C	T	4.208e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20563186	X_20563186_SNP [dm3] X_20692159_SNP [dm6]	G	C	4.219e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8151496	X_8151496_SNP [dm3] X_8257463_SNP [dm6]	T	G	4.233e^-4	1	INTRON CG1632
3R	17199067	3R_17199067_SNP [dm3] 3R_21373345_SNP [dm6]	C	T	4.246e^-4	1	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7836874	2R_7836874_SNP [dm3] 2R_11949369_SNP [dm6]	C	A	4.249e^-4	1	INTRON CG13188
3R	23893794	3R_23893794_SNP [dm3] 3R_28068072_SNP [dm6]	G	A	4.305e^-4	1	INTRON CG34362
X	3525266	X_3525266_SNP [dm3] X_3631233_SNP [dm6]	T	C	4.306e^-4	1	INTRON AstA-R1
3L	4511568	3L_4511568_INS [dm3] 3L_4511568_INS [dm6]	G	GTTTGAAG	4.317e^-4	1	INTRON Tie
3L	5676010	3L_5676010_SNP [dm3] 3L_5682910_SNP [dm6]	T	C	4.336e^-4	1	INTRON sif
X	8151437	X_8151437_SNP [dm3] X_8257404_SNP [dm6]	A	G	4.337e^-4	1	INTRON CG1632
3L	4304398	3L_4304398_DEL [dm3] 3L_4304398_DEL [dm6]	TTGCCGCTGC	T	4.341e^-4	1	INTRON dyl
2L	2079325	2L_2079325_SNP [dm3] 2L_2079325_SNP [dm6]	A	G	4.351e^-4	1	UPSTREAM CG12674 INTRON dpr3
2R	8550593	2R_8550593_SNP [dm3] 2R_12663088_SNP [dm6]	C	G	4.360e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2R	9661538	2R_9661538_SNP [dm3] 2R_13774033_SNP [dm6]	C	G	4.377e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	7054214	3L_7054214_SNP [dm3] 3L_7061114_SNP [dm6]	A	T	4.402e^-4	1	INTRON CG8641
3R	20931584	3R_20931584_SNP [dm3] 3R_25105862_SNP [dm6]	G	A	4.405e^-4	1	SYNONYMOUS_CODING CG34027
2R	16799940	2R_16799940_SNP [dm3] 2R_20912435_SNP [dm6]	T	C	4.408e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	194865	2L_194865_SNP [dm3] 2L_194865_SNP [dm6]	G	A	4.412e^-4	1	NON_SYNONYMOUS_CODING spen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3208063	2R_3208063_SNP [dm3] 2R_7320558_SNP [dm6]	C	T	4.415e^-4	1	UTR_3_PRIME Dscam1
3R	27283772	3R_27283772_SNP [dm3] 3R_31458050_SNP [dm6]	C	A	4.417e^-4	1	DOWNSTREAM lox & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	14258956	3R_14258956_SNP [dm3] 3R_18433234_SNP [dm6]	G	T	4.417e^-4	1	INTRON fru
2R	13447441	2R_13447441_DEL [dm3] 2R_17559936_DEL [dm6]	TTATTACATTTT...	T	4.424e^-4	1	INTRON Klp54D
3R	21331924	3R_21331924_SNP [dm3] 3R_25506202_SNP [dm6]	A	G	4.449e^-4	1	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_inv
2R	7211343	2R_7211343_SNP [dm3] 2R_11323838_SNP [dm6]	T	C	4.450e^-4	1	UPSTREAM sha INTERGENIC
X	17737998	X_17737998_SNP [dm3] X_17843965_SNP [dm6]	C	G	4.452e^-4	1	SYNONYMOUS_CODING CG8142 UPSTREAM Ucp4A DOWNSTREAM e_y_1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14095282	2R_14095282_SNP [dm3] 2R_18207777_SNP [dm6]	A	G	4.459e^-4	1	START_GAINED CG30114 UTR_5_PRIME CG30114
3R	18951453	3R_18951453_SNP [dm3] 3R_23125731_SNP [dm6]	T	C	4.480e^-4	1	SYNONYMOUS_CODING CG31365 DOWNSTREAM CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	18645536	2R_18645536_SNP [dm3] 2R_22758031_SNP [dm6]	G	A	4.481e^-4	1	SYNONYMOUS_CODING CG42260 EXON CR30267
2R	14201864	2R_14201864_SNP [dm3] 2R_18314359_SNP [dm6]	A	G	4.482e^-4	1	INTRON sbb	TF binding site mE1_TFBS_zfh1
2R	11168109	2R_11168109_SNP [dm3] 2R_15280604_SNP [dm6]	C	T	4.488e^-4	1	INTRON Trpm
3R	14259140	3R_14259140_DEL [dm3] 3R_18433418_DEL [dm6]	TAG	T	4.489e^-4	1	INTRON fru
3R	14259144	3R_14259144_DEL [dm3] 3R_18433422_DEL [dm6]	ATGGAATCCCATTT...	A	4.489e^-4	1	INTRON fru
3R	14259225	3R_14259225_DEL [dm3] 3R_18433503_DEL [dm6]	GGG	G	4.489e^-4	1	INTRON fru
3R	14259242	3R_14259242_SNP [dm3] 3R_18433520_SNP [dm6]	T	C	4.489e^-4	1	INTRON fru
3R	14259267	3R_14259267_SNP [dm3] 3R_18433545_SNP [dm6]	T	C	4.489e^-4	1	INTRON fru
3R	14259269	3R_14259269_SNP [dm3] 3R_18433547_SNP [dm6]	C	T	4.489e^-4	1	INTRON fru
3R	14259284	3R_14259284_SNP [dm3] 3R_18433562_SNP [dm6]	T	G	4.489e^-4	1	INTRON fru
3R	14259305	3R_14259305_SNP [dm3] 3R_18433583_SNP [dm6]	T	G	4.489e^-4	1	INTRON fru
3R	14259320	3R_14259320_SNP [dm3] 3R_18433598_SNP [dm6]	C	A	4.489e^-4	1	INTRON fru
3R	14259364	3R_14259364_SNP [dm3] 3R_18433642_SNP [dm6]	A	T	4.489e^-4	1	INTRON fru
3R	27381652	3R_27381652_SNP [dm3] 3R_31555930_SNP [dm6]	T	C	4.491e^-4	1	INTRON nyo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7085795	3L_7085795_SNP [dm3] 3L_7092695_SNP [dm6]	A	G	4.504e^-4	1	UPSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_inv
3L	2427183	3L_2427183_SNP [dm3] 3L_2427183_SNP [dm6]	G	A	4.509e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2723638	2L_2723638_SNP [dm3] 2L_2723638_SNP [dm6]	A	G	4.514e^-4	1	INTERGENIC
X	4935365	X_4935365_SNP [dm3] X_5041332_SNP [dm6]	C	A	4.521e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
3R	6307151	3R_6307151_SNP [dm3] 3R_10481429_SNP [dm6]	C	A	4.540e^-4	1	INTERGENIC
3L	1085521	3L_1085521_SNP [dm3] 3L_1085521_SNP [dm6]	T	A	4.551e^-4	1	INTRON bab1
3L	1085536	3L_1085536_SNP [dm3] 3L_1085536_SNP [dm6]	G	A	4.551e^-4	1	INTRON bab1
2L	1087397	2L_1087397_SNP [dm3] 2L_1087397_SNP [dm6]	G	A	4.551e^-4	1	INTRON CG4629
2L	110212	2L_110212_SNP [dm3] 2L_110212_SNP [dm6]	T	G	4.571e^-4	1	INTRON Sam-S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6962637	X_6962637_SNP [dm3] X_7068604_SNP [dm6]	T	A	4.594e^-4	1	UPSTREAM CG4607 INTERGENIC
2L	243732	2L_243732_SNP [dm3] 2L_243732_SNP [dm6]	A	C	4.605e^-4	1	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	14098769	3L_14098769_SNP [dm3] 3L_14105669_SNP [dm6]	T	G	4.612e^-4	1	INTRON Sox21a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14098817	3L_14098817_SNP [dm3] 3L_14105717_SNP [dm6]	G	T	4.612e^-4	1	INTRON Sox21a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	5991644	3L_5991644_SNP [dm3] 3L_5998544_SNP [dm6]	T	A	4.615e^-4	1	INTRON PVRAP
2L	19338382	2L_19338382_SNP [dm3] 2L_19338382_SNP [dm6]	G	A	4.619e^-4	1	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	2796100	2L_2796100_SNP [dm3] 2L_2796100_SNP [dm6]	G	A	4.640e^-4	1	UPSTREAM Syt1 INTRON Syt1
2R	8809924	2R_8809924_SNP [dm3] 2R_12922419_SNP [dm6]	G	A	4.654e^-4	1	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	11168103	2R_11168103_SNP [dm3] 2R_15280598_SNP [dm6]	C	T	4.657e^-4	1	INTRON Trpm
2R	13356842	2R_13356842_SNP [dm3] 2R_17469337_SNP [dm6]	C	T	4.658e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC
X	17635071	X_17635071_SNP [dm3] X_17741038_SNP [dm6]	C	T	4.665e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	3659310	2L_3659310_SNP [dm3] 2L_3659310_SNP [dm6]	G	A	4.665e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17772773	3L_17772773_SNP [dm3] 3L_17779673_SNP [dm6]	G	A	4.694e^-4	1	INTERGENIC
3L	1600308	3L_1600308_DEL [dm3] 3L_1600308_DEL [dm6]	GCA	G	4.701e^-4	1	UTR_3_PRIME CG13917 DOWNSTREAM CG12104
2R	18645545	2R_18645545_SNP [dm3] 2R_22758040_SNP [dm6]	G	A	4.702e^-4	1	SYNONYMOUS_CODING CG42260 EXON CR30267
3R	24480856	3R_24480856_SNP [dm3] 3R_28655134_SNP [dm6]	G	A	4.741e^-4	1	INTERGENIC
X	16456009	X_16456009_SNP [dm3] X_16561976_SNP [dm6]	T	C	4.760e^-4	1	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1613021	3L_1613021_SNP [dm3] 3L_1613021_SNP [dm6]	T	C	4.785e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
2L	3659406	2L_3659406_SNP [dm3] 2L_3659406_SNP [dm6]	T	C	4.789e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6464385	3L_6464385_SNP [dm3] 3L_6471285_SNP [dm6]	T	C	4.792e^-4	1	INTRON CG42747
3R	21455025	3R_21455025_SNP [dm3] 3R_25629303_SNP [dm6]	A	G	4.807e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	26409671	3R_26409671_SNP [dm3] 3R_30583949_SNP [dm6]	A	T	4.810e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409688	3R_26409688_SNP [dm3] 3R_30583966_SNP [dm6]	G	C	4.810e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
3R	26409690	3R_26409690_SNP [dm3] 3R_30583968_SNP [dm6]	G	A	4.810e^-4	1	UPSTREAM Rpt6R DOWNSTREAM CG9717 INTERGENIC
2L	3962104	2L_3962104_SNP [dm3] 2L_3962104_SNP [dm6]	A	G	4.833e^-4	1	INTRON fred
2L	16071396	2L_16071396_SNP [dm3] 2L_16071396_SNP [dm6]	G	C	4.866e^-4	1	INTRON beat-Ia
2R	9069079	2R_9069079_SNP [dm3] 2R_13181574_SNP [dm6]	C	T	4.868e^-4	1	SYNONYMOUS_CODING seq UTR_5_PRIME CG17724 INTRON CG17724 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8962241	X_8962241_SNP [dm3] X_9068208_SNP [dm6]	G	A	4.876e^-4	1	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1425655	2R_1425655_SNP [dm3] 2R_5538150_SNP [dm6]	A	T	4.892e^-4	1	INTRON CG30438	transposable element FlyBase
X	9941718	X_9941718_SNP [dm3] X_10047685_SNP [dm6]	C	T	4.899e^-4	1	INTRON Cht6 EXON CR45185 & 1 other	TF binding site BDTNP1_TFBS_twi
X	15552751	X_15552751_DEL [dm3] X_15658718_DEL [dm6]	TCCAAATCGAT...	T	4.911e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2R	13356858	2R_13356858_SNP [dm3] 2R_17469353_SNP [dm6]	A	G	4.916e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	9546778	2L_9546778_SNP [dm3] 2L_9546778_SNP [dm6]	C	G	4.933e^-4	1	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp	TF binding site mE1_TFBS_chinmo
X	20563163	X_20563163_SNP [dm3] X_20692136_SNP [dm6]	C	T	4.940e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	14449693	2L_14449693_SNP [dm3] 2L_14449693_SNP [dm6]	A	C	4.949e^-4	1	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3119493	2L_3119493_SNP [dm3] 2L_3119493_SNP [dm6]	A	C	4.954e^-4	1	INTRON toc
2L	16891673	2L_16891673_SNP [dm3] 2L_16891673_SNP [dm6]	A	G	4.965e^-4	1	SYNONYMOUS_CODING tweek DOWNSTREAM CG42556
X	8151421	X_8151421_SNP [dm3] X_8257388_SNP [dm6]	A	T	5.035e^-4	1	INTRON CG1632
3R	24471873	3R_24471873_SNP [dm3] 3R_28646151_SNP [dm6]	G	A	5.057e^-4	1	INTERGENIC
3L	5675775	3L_5675775_SNP [dm3] 3L_5682675_SNP [dm6]	A	T	5.070e^-4	1	INTRON sif
X	4017875	X_4017875_SNP [dm3] X_4123842_SNP [dm6]	C	T	5.081e^-4	1	SYNONYMOUS_CODING tyf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8809909	2R_8809909_SNP [dm3] 2R_12922404_SNP [dm6]	G	A	5.084e^-4	1	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	2828192	X_2828192_SNP [dm3] X_2934159_SNP [dm6]	T	A	5.087e^-4	1	UPSTREAM CG3592 INTRON kirre
3L	12174978	3L_12174978_SNP [dm3] 3L_12181878_SNP [dm6]	T	C	5.105e^-4	1	SYNONYMOUS_CODING CAH2
2R	19879975	2R_19879975_SNP [dm3] 2R_23992452_SNP [dm6]	A	T	5.109e^-4	1	UTR_3_PRIME CG3860 DOWNSTREAM Pask & 1 other
3L	7649787	3L_7649787_SNP [dm3] 3L_7656687_SNP [dm6]	G	A	5.115e^-4	1	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
2L	17224075	2L_17224075_SNP [dm3] 2L_17224075_SNP [dm6]	T	C	5.117e^-4	1	INTRON beat-IIIc	TF binding site mE1_TFBS_cad
2R	19782437	2R_19782437_SNP [dm3] 2R_23894914_SNP [dm6]	C	T	5.127e^-4	1	UTR_5_PRIME Upf3 UPSTREAM CG17658 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	1080122	3L_1080122_SNP [dm3] 3L_1080122_SNP [dm6]	C	T	5.129e^-4	1	INTRON bab1	TF binding site mE1_TFBS_chinmo
2R	11677534	2R_11677534_SNP [dm3] 2R_15790029_SNP [dm6]	C	T	5.135e^-4	1	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	21794341	3R_21794341_SNP [dm3] 3R_25968619_SNP [dm6]	T	G	5.141e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18385551	3R_18385551_SNP [dm3] 3R_22559829_SNP [dm6]	A	G	5.142e^-4	1	SYNONYMOUS_CODING CG5278
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	5.158e^-4	1	UPSTREAM CG44252 INTERGENIC
2L	13597884	2L_13597884_SNP [dm3] 2L_13597884_SNP [dm6]	G	A	5.171e^-4	1	UPSTREAM CG9254 INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16876301	2L_16876301_SNP [dm3] 2L_16876301_SNP [dm6]	T	G	5.180e^-4	1	INTRON CR31781
2L	16876328	2L_16876328_SNP [dm3] 2L_16876328_SNP [dm6]	A	C	5.180e^-4	1	INTRON CR31781
2L	155961	2L_155961_SNP [dm3] 2L_155961_SNP [dm6]	G	T	5.182e^-4	1	UTR_3_PRIME CG11455 UPSTREAM CG3436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	11081277	3R_11081277_SNP [dm3] 3R_15255555_SNP [dm6]	T	A	5.185e^-4	1	INTRON CG42404	TF binding site mE1_TFBS_cad
3R	25723495	3R_25723495_SNP [dm3] 3R_29897773_SNP [dm6]	C	A	5.191e^-4	1	UTR_3_PRIME CG31038 INTRON CG31038
2L	121672	2L_121672_DEL [dm3] 2L_121672_DEL [dm6]	TT	T	5.199e^-4	1	UTR_5_PRIME CG4822 UPSTREAM CG4822 DOWNSTREAM CG3164 INTRON CG11455
X	15552825	X_15552825_INS [dm3] X_15658792_INS [dm6]	T	TATAAAATAAACAAAAAAAA...	5.231e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	14259079	3R_14259079_SNP [dm3] 3R_18433357_SNP [dm6]	C	T	5.252e^-4	1	INTRON fru
3L	10520155	3L_10520155_SNP [dm3] 3L_10527055_SNP [dm6]	G	A	5.280e^-4	1	INTRON A2bp1
2L	14139296	2L_14139296_SNP [dm3] 2L_14139296_SNP [dm6]	T	C	5.280e^-4	1	INTRON CG17341
X	8151441	X_8151441_SNP [dm3] X_8257408_SNP [dm6]	T	C	5.291e^-4	1	INTRON CG1632
3R	17490057	3R_17490057_SNP [dm3] 3R_21664335_SNP [dm6]	T	C	5.292e^-4	1	UPSTREAM CG15497 INTERGENIC
3L	3619167	3L_3619167_SNP [dm3] 3L_3619167_SNP [dm6]	C	T	5.292e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1073548	3L_1073548_SNP [dm3] 3L_1073548_SNP [dm6]	C	T	5.310e^-4	1	INTRON bab1
3R	14833273	3R_14833273_SNP [dm3] 3R_19007551_SNP [dm6]	A	G	5.316e^-4	1	INTRON gukh
2L	9546793	2L_9546793_SNP [dm3] 2L_9546793_SNP [dm6]	G	A	5.329e^-4	1	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp	TF binding site mE1_TFBS_chinmo
2R	3493962	2R_3493962_SNP [dm3] 2R_7606457_SNP [dm6]	G	A	5.344e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
2R	3493963	2R_3493963_SNP [dm3] 2R_7606458_SNP [dm6]	C	T	5.344e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
2R	3493966	2R_3493966_SNP [dm3] 2R_7606461_SNP [dm6]	A	C	5.344e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
3L	5143224	3L_5143224_SNP [dm3] 3L_5150124_SNP [dm6]	G	A	5.350e^-4	1	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12582980	3L_12582980_SNP [dm3] 3L_12589880_SNP [dm6]	A	T	5.359e^-4	1	INTRON ara	TF binding site BDTNP1_TFBS_twi
2L	15153386	2L_15153386_SNP [dm3] 2L_15153386_SNP [dm6]	T	A	5.365e^-4	1	INTERGENIC
3L	7031593	3L_7031593_SNP [dm3] 3L_7038493_SNP [dm6]	G	A	5.366e^-4	1	INTRON Mp
3L	7031604	3L_7031604_INS [dm3] 3L_7038504_INS [dm6]	A	ATATGTATATATATGTATAT...	5.366e^-4	1	INTRON Mp
2L	16071407	2L_16071407_SNP [dm3] 2L_16071407_SNP [dm6]	A	T	5.371e^-4	1	INTRON beat-Ia
2R	12338934	2R_12338934_SNP [dm3] 2R_16451429_SNP [dm6]	C	A	5.387e^-4	1	INTERGENIC
3L	13277773	3L_13277773_SNP [dm3] 3L_13284673_SNP [dm6]	T	G	5.388e^-4	1	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
3L	13294568	3L_13294568_SNP [dm3] 3L_13301468_SNP [dm6]	A	G	5.431e^-4	1	UPSTREAM SP & 1 other INTERGENIC
2L	41860	2L_41860_SNP [dm3] 2L_41860_SNP [dm6]	T	G	5.439e^-4	1	INTRON Cda5
3L	13292196	3L_13292196_SNP [dm3] 3L_13299096_SNP [dm6]	T	A	5.448e^-4	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	17426692	2L_17426692_SNP [dm3] 2L_17426692_SNP [dm6]	C	G	5.466e^-4	1	INTRON Dif
2L	5762	2L_5762_SNP [dm3] 2L_5762_SNP [dm6]	T	C	5.480e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2322039	2L_2322039_DEL [dm3] 2L_2322039_DEL [dm6]	ACGAATA	A	5.504e^-4	1	INTRON CG9967 & 1 other
3L	8545308	3L_8545308_SNP [dm3] 3L_8552208_SNP [dm6]	T	A	5.504e^-4	1	INTRON rhea
2L	12397980	2L_12397980_SNP [dm3] 2L_12397980_SNP [dm6]	T	A	5.541e^-4	1	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
3R	15415328	3R_15415328_SNP [dm3] 3R_19589606_SNP [dm6]	T	C	5.551e^-4	1	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12288888	3L_12288888_SNP [dm3] 3L_12295788_SNP [dm6]	T	G	5.560e^-4	1	INTRON CG4328
2L	155547	2L_155547_INS [dm3] 2L_155547_INS [dm6]	G	GGTGTATCCAAATTGAACTG...	5.590e^-4	1	SPLICE_SITE_REGION CG11455 UTR_5_PRIME CG11455 UPSTREAM CG3436 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10474606	2L_10474606_SNP [dm3] 2L_10474606_SNP [dm6]	G	T	5.623e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11081287	3R_11081287_SNP [dm3] 3R_15255565_SNP [dm6]	C	G	5.651e^-4	1	INTRON CG42404	TF binding site mE1_TFBS_cad
3L	9306927	3L_9306927_SNP [dm3] 3L_9313827_SNP [dm6]	G	A	5.654e^-4	1	INTERGENIC
3L	13906365	3L_13906365_SNP [dm3] 3L_13913265_SNP [dm6]	A	T	5.668e^-4	1	INTRON Rgl
3L	13906367	3L_13906367_SNP [dm3] 3L_13913267_SNP [dm6]	G	A	5.668e^-4	1	INTRON Rgl
3R	16031607	3R_16031607_SNP [dm3] 3R_20205885_SNP [dm6]	T	G	5.679e^-4	1	INTRON Nlg4
3R	11043739	3R_11043739_SNP [dm3] 3R_15218017_SNP [dm6]	C	A	5.685e^-4	1	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4511648	3L_4511648_SNP [dm3] 3L_4511648_SNP [dm6]	G	A	5.686e^-4	1	INTRON Tie
2R	7530927	2R_7530927_SNP [dm3] 2R_11643422_SNP [dm6]	G	A	5.694e^-4	1	SYNONYMOUS_CODING CG9003
X	17945071	X_17945071_SNP [dm3] X_18051038_SNP [dm6]	G	A	5.732e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	3476063	X_3476063_SNP [dm3] X_3582030_SNP [dm6]	T	G	5.747e^-4	1	INTRON AstA-R1
X	3476068	X_3476068_SNP [dm3] X_3582035_SNP [dm6]	T	A	5.747e^-4	1	INTRON AstA-R1
3L	13650043	3L_13650043_SNP [dm3] 3L_13656943_SNP [dm6]	T	C	5.755e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3783908	X_3783908_SNP [dm3] X_3889875_SNP [dm6]	C	G	5.760e^-4	1	NON_SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_chinmo
3L	13630499	3L_13630499_SNP [dm3] 3L_13637399_SNP [dm6]	C	A	5.771e^-4	1	INTRON bru-3
2L	170176	2L_170176_SNP [dm3] 2L_170176_SNP [dm6]	G	T	5.785e^-4	1	INTRON spen	TF binding site mE1_TFBS_HSA
2L	9108644	2L_9108644_SNP [dm3] 2L_9108644_SNP [dm6]	C	G	5.797e^-4	1	INTERGENIC
X	19861077	X_19861077_SNP [dm3] X_19967044_SNP [dm6]	T	C	5.797e^-4	1	INTRON Nep3
2R	7367122	2R_7367122_SNP [dm3] 2R_11479617_SNP [dm6]	G	T	5.848e^-4	1	INTRON inv	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	47108	2L_47108_SNP [dm3] 2L_47108_SNP [dm6]	A	G	5.854e^-4	1	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	60530	2L_60530_SNP [dm3] 2L_60530_SNP [dm6]	T	A	5.854e^-4	1	INTRON Cda5	transposable element FlyBase
2L	60532	2L_60532_DEL [dm3] 2L_60532_DEL [dm6]	TTTT	A	5.854e^-4	1	INTRON Cda5	transposable element FlyBase
2L	74485	2L_74485_SNP [dm3] 2L_74485_SNP [dm6]	C	A	5.854e^-4	1	UTR_5_PRIME galectin UPSTREAM CR44987 INTRON galectin
X	10931371	X_10931371_SNP [dm3] X_11037338_SNP [dm6]	T	C	5.862e^-4	1	INTRON CG42339
3L	12596078	3L_12596078_SNP [dm3] 3L_12602978_SNP [dm6]	T	C	5.863e^-4	1	INTERGENIC
3L	12596139	3L_12596139_INS [dm3] 3L_12603039_INS [dm6]	T	TACAAAATGCTAAAT...	5.863e^-4	1	INTERGENIC
3L	12596143	3L_12596143_SNP [dm3] 3L_12603043_SNP [dm6]	T	A	5.863e^-4	1	INTERGENIC
3L	12596145	3L_12596145_SNP [dm3] 3L_12603045_SNP [dm6]	T	G	5.863e^-4	1	INTERGENIC
X	16532035	X_16532035_SNP [dm3] X_16638002_SNP [dm6]	C	T	5.866e^-4	1	UTR_5_PRIME RpS19a UPSTREAM RpS19a & 1 other INTRON RpS19a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18282069	2R_18282069_SNP [dm3] 2R_22394564_SNP [dm6]	T	A	5.868e^-4	1	DOWNSTREAM CG13506 INTRON babos
2R	18282074	2R_18282074_SNP [dm3] 2R_22394569_SNP [dm6]	G	C	5.868e^-4	1	DOWNSTREAM CG13506 INTRON babos
2R	18282093	2R_18282093_SNP [dm3] 2R_22394588_SNP [dm6]	T	C	5.868e^-4	1	DOWNSTREAM CG13506 INTRON babos
2R	10462272	2R_10462272_DEL [dm3] 2R_14574767_DEL [dm6]	TTT	T	5.885e^-4	1	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9455620	2L_9455620_SNP [dm3] 2L_9455620_SNP [dm6]	G	A	5.886e^-4	1	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14483703	3L_14483703_SNP [dm3] 3L_14490603_SNP [dm6]	A	G	5.897e^-4	1	INTRON bbg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14483704	3L_14483704_SNP [dm3] 3L_14490604_SNP [dm6]	C	A	5.897e^-4	1	INTRON bbg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8811447	2R_8811447_SNP [dm3] 2R_12923942_SNP [dm6]	A	G	5.902e^-4	1	UTR_5_PRIME CG13319 UPSTREAM sug DOWNSTREAM NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6088257	X_6088257_SNP [dm3] X_6194224_SNP [dm6]	A	G	5.906e^-4	1	DOWNSTREAM CG32750 INTERGENIC
2R	13924555	2R_13924555_SNP [dm3] 2R_18037050_SNP [dm6]	T	G	5.934e^-4	1	INTERGENIC
2L	13213955	2L_13213955_SNP [dm3] 2L_13213955_SNP [dm6]	A	G	5.943e^-4	1	SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14095881	2R_14095881_SNP [dm3] 2R_18208376_SNP [dm6]	A	T	5.975e^-4	1	UTR_3_PRIME CG30114
3L	15838943	3L_15838943_SNP [dm3] 3L_15845843_SNP [dm6]	T	C	6.003e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5939708	2L_5939708_SNP [dm3] 2L_5939708_SNP [dm6]	A	G	6.013e^-4	1	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
3R	15281139	3R_15281139_SNP [dm3] 3R_19455417_SNP [dm6]	T	C	6.014e^-4	1	INTRON CG31221
3L	9497992	3L_9497992_SNP [dm3] 3L_9504892_SNP [dm6]	T	C	6.028e^-4	1	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9338081	2L_9338081_SNP [dm3] 2L_9338081_SNP [dm6]	T	A	6.040e^-4	1	UTR_5_PRIME Eaat1
2L	16764312	2L_16764312_SNP [dm3] 2L_16764312_SNP [dm6]	A	G	6.042e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10235872	3L_10235872_INS [dm3] 3L_10242772_INS [dm6]	A	AT	6.052e^-4	1	DOWNSTREAM CR44541 & 1 other INTERGENIC
X	1355391	X_1355391_SNP [dm3] X_1461358_SNP [dm6]	G	A	6.062e^-4	1	SYNONYMOUS_CODING CG14787 UPSTREAM CG14786 DOWNSTREAM Ns3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	6.063e^-4	1	INTRON CG34391
2L	151022	2L_151022_SNP [dm3] 2L_151022_SNP [dm6]	T	G	6.077e^-4	1	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_sens
3L	13768360	3L_13768360_SNP [dm3] 3L_13775260_SNP [dm6]	A	G	6.080e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	9662141	2R_9662141_SNP [dm3] 2R_13774636_SNP [dm6]	T	C	6.085e^-4	1	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17690503	2R_17690503_SNP [dm3] 2R_21802998_SNP [dm6]	A	T	6.106e^-4	1	UPSTREAM CR9284 INTERGENIC
2L	12395594	2L_12395594_SNP [dm3] 2L_12395594_SNP [dm6]	C	G	6.107e^-4	1	INTRON bru-2
2R	14201865	2R_14201865_SNP [dm3] 2R_18314360_SNP [dm6]	A	G	6.110e^-4	1	INTRON sbb	TF binding site mE1_TFBS_zfh1
2R	19894636	2R_19894636_SNP [dm3] 2R_24007113_SNP [dm6]	T	C	6.116e^-4	1	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
2R	19894656	2R_19894656_SNP [dm3] 2R_24007133_SNP [dm6]	A	G	6.116e^-4	1	SYNONYMOUS_CODING Unc-89
2R	19894926	2R_19894926_SNP [dm3] 2R_24007403_SNP [dm6]	G	A	6.116e^-4	1	SPLICE_SITE_REGION Unc-89 INTRON Unc-89
2R	19894960	2R_19894960_DEL [dm3] 2R_24007437_DEL [dm6]	AA	A	6.116e^-4	1	INTRON Unc-89
3R	20566095	3R_20566095_SNP [dm3] 3R_24740373_SNP [dm6]	C	T	6.124e^-4	1	INTRON tok
2R	15955820	2R_15955820_SNP [dm3] 2R_20068315_SNP [dm6]	T	C	6.127e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4235524	3L_4235524_SNP [dm3] 3L_4235524_SNP [dm6]	A	T	6.127e^-4	1	INTRON ImpL2
2R	14278979	2R_14278979_SNP [dm3] 2R_18391474_SNP [dm6]	A	T	6.130e^-4	1	UPSTREAM CG15068 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8545304	3L_8545304_INS [dm3] 3L_8552204_INS [dm6]	T	TTCCCATTGCCCATT...	6.131e^-4	1	INTRON rhea
2R	12111294	2R_12111294_SNP [dm3] 2R_16223789_SNP [dm6]	G	T	6.142e^-4	1	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13873040	3R_13873040_SNP [dm3] 3R_18047318_SNP [dm6]	C	T	6.167e^-4	1	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2L	6763718	2L_6763718_SNP [dm3] 2L_6763718_SNP [dm6]	T	A	6.190e^-4	1	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	43102	2L_43102_SNP [dm3] 2L_43102_SNP [dm6]	A	G	6.192e^-4	1	INTRON Cda5	TF binding site BDTNP1_TFBS_dl
2L	114862	2L_114862_SNP [dm3] 2L_114862_SNP [dm6]	A	G	6.195e^-4	1	UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8811199	2R_8811199_SNP [dm3] 2R_12923694_SNP [dm6]	A	T	6.209e^-4	1	UTR_3_PRIME NAT1 UPSTREAM CG13319 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13921522	2R_13921522_SNP [dm3] 2R_18034017_SNP [dm6]	C	T	6.213e^-4	1	INTERGENIC
2R	12366166	2R_12366166_SNP [dm3] 2R_16478661_SNP [dm6]	A	T	6.217e^-4	1	INTERGENIC
3L	1453380	3L_1453380_SNP [dm3] 3L_1453380_SNP [dm6]	G	A	6.218e^-4	1	INTRON Ptp61F
3L	16034550	3L_16034550_DEL [dm3] 3L_16041450_DEL [dm6]	CC	C	6.223e^-4	1	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	157709	2L_157709_SNP [dm3] 2L_157709_SNP [dm6]	T	A	6.230e^-4	1	DOWNSTREAM CG33635 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	159531	2L_159531_SNP [dm3] 2L_159531_SNP [dm6]	T	C	6.230e^-4	1	UTR_5_PRIME spen UPSTREAM CG33635	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13101771	3R_13101771_SNP [dm3] 3R_17276049_SNP [dm6]	G	T	6.231e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18159906	X_18159906_SNP [dm3] X_18265873_SNP [dm6]	C	A	6.243e^-4	1	INTERGENIC
X	17720271	X_17720271_SNP [dm3] X_17826238_SNP [dm6]	T	A	6.257e^-4	1	INTRON Socs16D	TF binding site BDTNP1_TFBS_dl
2L	70874	2L_70874_SNP [dm3] 2L_70874_SNP [dm6]	G	A	6.275e^-4	1	SYNONYMOUS_CODING dbr UPSTREAM galectin DOWNSTREAM CR44987
3R	10504183	3R_10504183_SNP [dm3] 3R_14678461_SNP [dm6]	G	C	6.286e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2214486	3L_2214486_SNP [dm3] 3L_2214486_SNP [dm6]	T	G	6.291e^-4	1	INTERGENIC
3L	2761039	3L_2761039_DEL [dm3] 3L_2761039_DEL [dm6]	AATATAGAATA...	A	6.298e^-4	1	INTRON Mrtf
3R	11443019	3R_11443019_SNP [dm3] 3R_15617297_SNP [dm6]	C	T	6.302e^-4	1	INTERGENIC
3R	11443027	3R_11443027_SNP [dm3] 3R_15617305_SNP [dm6]	C	A	6.302e^-4	1	INTERGENIC
2L	2964126	2L_2964126_SNP [dm3] 2L_2964126_SNP [dm6]	C	T	6.302e^-4	1	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15047310	2L_15047310_SNP [dm3] 2L_15047310_SNP [dm6]	C	T	6.304e^-4	1	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3L	5159102	3L_5159102_SNP [dm3] 3L_5166002_SNP [dm6]	C	A	6.331e^-4	1	INTRON shep
2L	16876114	2L_16876114_SNP [dm3] 2L_16876114_SNP [dm6]	T	C	6.333e^-4	1	INTRON CR31781
2L	16876121	2L_16876121_SNP [dm3] 2L_16876121_SNP [dm6]	G	C	6.333e^-4	1	INTRON CR31781
2L	16876146	2L_16876146_SNP [dm3] 2L_16876146_SNP [dm6]	T	C	6.333e^-4	1	SPLICE_SITE_REGION CR31781 INTRON CR31781
3L	12460036	3L_12460036_SNP [dm3] 3L_12466936_SNP [dm6]	T	C	6.343e^-4	1	INTRON eyg	TF binding site BDTNP1_TFBS_z
2L	13328028	2L_13328028_DEL [dm3] 2L_13328028_DEL [dm6]	GCTATG	A	6.381e^-4	1	INTRON CG43778
X	9866746	X_9866746_SNP [dm3] X_9972713_SNP [dm6]	T	C	6.396e^-4	1	INTRON CG43386	TF binding site mE1_TFBS_sbb
2R	3296441	2R_3296441_SNP [dm3] 2R_7408936_SNP [dm6]	T	C	6.401e^-4	1	NON_SYNONYMOUS_CODING CG1701	TF binding site BDTNP1_TFBS_dl
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	6.404e^-4	1	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15698454	2R_15698454_SNP [dm3] 2R_19810949_SNP [dm6]	A	T	6.412e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15698613	2R_15698613_SNP [dm3] 2R_19811108_SNP [dm6]	T	G	6.412e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19895926	2R_19895926_SNP [dm3] 2R_24008403_SNP [dm6]	G	T	6.417e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27347456	3R_27347456_SNP [dm3] 3R_31521734_SNP [dm6]	A	G	6.428e^-4	1	EXON CR45573
2L	7194745	2L_7194745_DEL [dm3] 2L_7194745_DEL [dm6]	ATTCA	A	6.437e^-4	1	UPSTREAM CG4497 DOWNSTREAM CG4502 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	2306835	2L_2306835_SNP [dm3] 2L_2306835_SNP [dm6]	G	A	6.441e^-4	1	INTERGENIC
3L	1453400	3L_1453400_SNP [dm3] 3L_1453400_SNP [dm6]	A	T	6.456e^-4	1	INTRON Ptp61F
3L	5010748	3L_5010748_SNP [dm3] 3L_5010748_SNP [dm6]	T	A	6.461e^-4	1	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	234412	2L_234412_SNP [dm3] 2L_234412_SNP [dm6]	C	T	6.462e^-4	1	SYNONYMOUS_CODING kis DOWNSTREAM CG13693
3R	15033160	3R_15033160_DEL [dm3] 3R_19207438_DEL [dm6]	CCACAGGATTCGATAGGCTC...	C	6.469e^-4	1	INTERGENIC
X	4577918	X_4577918_SNP [dm3] X_4683885_SNP [dm6]	G	A	6.474e^-4	1	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8811197	2R_8811197_SNP [dm3] 2R_12923692_SNP [dm6]	T	A	6.483e^-4	1	UTR_3_PRIME NAT1 UPSTREAM CG13319 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	8811305	2R_8811305_SNP [dm3] 2R_12923800_SNP [dm6]	T	A	6.483e^-4	1	UPSTREAM CG13319 & 1 other DOWNSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	13334910	3L_13334910_SNP [dm3] 3L_13341810_SNP [dm6]	T	C	6.493e^-4	1	INTERGENIC
3L	14498968	3L_14498968_SNP [dm3] 3L_14505868_SNP [dm6]	G	C	6.493e^-4	1	INTRON bbg
2R	14201882	2R_14201882_SNP [dm3] 2R_18314377_SNP [dm6]	T	C	6.521e^-4	1	INTRON sbb	TF binding site mE1_TFBS_zfh1
2L	127497	2L_127497_SNP [dm3] 2L_127497_SNP [dm6]	C	T	6.532e^-4	1	INTRON CG11455 & 1 other
2R	19782502	2R_19782502_DEL [dm3] 2R_23894979_DEL [dm6]	AA	A	6.534e^-4	1	UTR_5_PRIME Upf3 UPSTREAM CG17658 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	7031600	3L_7031600_SNP [dm3] 3L_7038500_SNP [dm6]	A	G	6.534e^-4	1	INTRON Mp
X	6486443	X_6486443_SNP [dm3] X_6592410_SNP [dm6]	T	C	6.534e^-4	1	DOWNSTREAM CR43832 INTRON Pat1	TF binding site mE1_TFBS_inv
X	6962678	X_6962678_SNP [dm3] X_7068645_SNP [dm6]	G	A	6.541e^-4	1	UPSTREAM CG4607 INTERGENIC
X	6962697	X_6962697_SNP [dm3] X_7068664_SNP [dm6]	A	G	6.541e^-4	1	UPSTREAM CG4607 INTERGENIC
3R	25798269	3R_25798269_SNP [dm3] 3R_29972547_SNP [dm6]	G	A	6.564e^-4	1	INTERGENIC
2R	2634639	2R_2634639_SNP [dm3] 2R_6747134_SNP [dm6]	C	T	6.570e^-4	1	DOWNSTREAM phtf INTRON CG3267	transposable element FlyBase
3L	12288833	3L_12288833_SNP [dm3] 3L_12295733_SNP [dm6]	G	T	6.574e^-4	1	INTRON CG4328
2L	11500808	2L_11500808_SNP [dm3] 2L_11500808_SNP [dm6]	C	A	6.580e^-4	1	UPSTREAM spz4 INTERGENIC
2L	11501274	2L_11501274_INS [dm3] 2L_11501274_INS [dm6]	T	TGT	6.580e^-4	1	UPSTREAM spz4 INTERGENIC
2L	11501465	2L_11501465_DEL [dm3] 2L_11501465_DEL [dm6]	TT	T	6.580e^-4	1	UPSTREAM spz4 INTERGENIC
2R	14912101	2R_14912101_SNP [dm3] 2R_19024596_SNP [dm6]	A	G	6.588e^-4	1	INTRON 5-HT1B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4692101	3R_4692101_SNP [dm3] 3R_8866379_SNP [dm6]	A	T	6.592e^-4	1	INTRON pyd
2R	10657466	2R_10657466_SNP [dm3] 2R_14769961_SNP [dm6]	G	A	6.598e^-4	1	SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	16403609	2L_16403609_SNP [dm3] 2L_16403609_SNP [dm6]	A	C	6.598e^-4	1	INTRON CG5888
2L	16403640	2L_16403640_SNP [dm3] 2L_16403640_SNP [dm6]	T	C	6.598e^-4	1	INTRON CG5888
X	3165375	X_3165375_SNP [dm3] X_3271342_SNP [dm6]	T	A	6.613e^-4	1	INTRON dnc
2L	4020160	2L_4020160_SNP [dm3] 2L_4020160_SNP [dm6]	T	C	6.626e^-4	1	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15032271	3R_15032271_DEL [dm3] 3R_19206549_DEL [dm6]	TCC	T	6.638e^-4	1	INTERGENIC
3R	26410498	3R_26410498_SNP [dm3] 3R_30584776_SNP [dm6]	T	C	6.656e^-4	1	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3087723	2L_3087723_SNP [dm3] 2L_3087723_SNP [dm6]	A	T	6.657e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7486244	3L_7486244_SNP [dm3] 3L_7493144_SNP [dm6]	G	A	6.659e^-4	1	DOWNSTREAM Cyp4d8 INTRON Cyp316a1
3L	1085530	3L_1085530_SNP [dm3] 3L_1085530_SNP [dm6]	C	G	6.682e^-4	1	INTRON bab1
3R	26410471	3R_26410471_SNP [dm3] 3R_30584749_SNP [dm6]	G	A	6.691e^-4	1	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12547349	2R_12547349_SNP [dm3] 2R_16659844_SNP [dm6]	A	C	6.727e^-4	1	UPSTREAM Picot INTRON Picot
2R	12547397	2R_12547397_SNP [dm3] 2R_16659892_SNP [dm6]	A	G	6.727e^-4	1	UPSTREAM Picot INTRON Picot
2R	16444846	2R_16444846_SNP [dm3] 2R_20557341_SNP [dm6]	G	A	6.727e^-4	1	INTRON lms	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18647404	2R_18647404_SNP [dm3] 2R_22759899_SNP [dm6]	C	T	6.736e^-4	1	NON_SYNONYMOUS_CODING CG42260 DOWNSTREAM CR30267 INTRON CG42260	TF binding site mE1_TFBS_cad
2L	3845990	2L_3845990_SNP [dm3] 2L_3845990_SNP [dm6]	G	A	6.751e^-4	1	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10611716	3L_10611716_SNP [dm3] 3L_10618616_SNP [dm6]	T	A	6.757e^-4	1	INTERGENIC
3L	19368758	3L_19368758_SNP [dm3] 3L_19375658_SNP [dm6]	G	A	6.769e^-4	1	INTRON CG32206
3L	19368849	3L_19368849_SNP [dm3] 3L_19375749_SNP [dm6]	C	G	6.769e^-4	1	INTRON CG32206
X	13641817	X_13641817_SNP [dm3] X_13747784_SNP [dm6]	C	A	6.769e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16481621	2R_16481621_SNP [dm3] 2R_20594116_SNP [dm6]	A	G	6.774e^-4	1	INTRON bl
2R	11038398	2R_11038398_SNP [dm3] 2R_15150893_SNP [dm6]	T	G	6.775e^-4	1	INTERGENIC
3L	12596117	3L_12596117_SNP [dm3] 3L_12603017_SNP [dm6]	A	G	6.785e^-4	1	INTERGENIC
3L	9597285	3L_9597285_SNP [dm3] 3L_9604185_SNP [dm6]	T	G	6.803e^-4	1	INTRON CG3280
2R	19701002	2R_19701002_SNP [dm3] 2R_23813479_SNP [dm6]	G	A	6.828e^-4	1	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
X	9818276	X_9818276_SNP [dm3] X_9924243_SNP [dm6]	A	G	6.832e^-4	1	INTERGENIC
3L	7632926	3L_7632926_SNP [dm3] 3L_7639826_SNP [dm6]	A	T	6.832e^-4	1	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
X	14473778	X_14473778_SNP [dm3] X_14579745_SNP [dm6]	A	C	6.838e^-4	1	UPSTREAM CG14414 INTERGENIC
2L	16371370	2L_16371370_SNP [dm3] 2L_16371370_SNP [dm6]	G	T	6.842e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	707925	2L_707925_SNP [dm3] 2L_707925_SNP [dm6]	C	G	6.847e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10294705	2L_10294705_SNP [dm3] 2L_10294705_SNP [dm6]	T	G	6.856e^-4	1	INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13356899	2R_13356899_SNP [dm3] 2R_17469394_SNP [dm6]	T	A	6.859e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16046416	2L_16046416_SNP [dm3] 2L_16046416_SNP [dm6]	C	T	6.873e^-4	1	SPLICE_SITE_REGION BicC & 1 other INTRON BicC & 1 other
2L	9178410	2L_9178410_SNP [dm3] 2L_9178410_SNP [dm6]	T	C	6.879e^-4	1	INTRON tai	TF binding site mE1_TFBS_Trl
2L	15556565	2L_15556565_DEL [dm3] 2L_15556565_DEL [dm6]	AACTGCTTAA	A	6.885e^-4	1	INTRON kek3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11304793	2R_11304793_SNP [dm3] 2R_15417288_SNP [dm6]	G	A	6.897e^-4	1	INTRON CG43729
3R	25122261	3R_25122261_SNP [dm3] 3R_29296539_SNP [dm6]	A	G	6.902e^-4	1	SYNONYMOUS_CODING CG14506	TF binding site mE1_TFBS_sens
X	18341873	X_18341873_SNP [dm3] X_18447840_SNP [dm6]	G	A	6.910e^-4	1	INTRON CG32547
2L	7788529	2L_7788529_SNP [dm3] 2L_7788529_SNP [dm6]	A	G	6.912e^-4	1	INTRON CG7149
2L	7788530	2L_7788530_SNP [dm3] 2L_7788530_SNP [dm6]	G	A	6.912e^-4	1	INTRON CG7149
2L	7788542	2L_7788542_SNP [dm3] 2L_7788542_SNP [dm6]	C	A	6.912e^-4	1	INTRON CG7149
2L	7788544	2L_7788544_SNP [dm3] 2L_7788544_SNP [dm6]	A	T	6.912e^-4	1	INTRON CG7149
2L	7788627	2L_7788627_SNP [dm3] 2L_7788627_SNP [dm6]	C	G	6.912e^-4	1	INTRON CG7149
2L	14143821	2L_14143821_SNP [dm3] 2L_14143821_SNP [dm6]	G	A	6.916e^-4	1	INTRON CG17341
2R	8811459	2R_8811459_SNP [dm3] 2R_12923954_SNP [dm6]	T	G	6.918e^-4	1	NON_SYNONYMOUS_CODING CG13319 UPSTREAM sug DOWNSTREAM NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3165378	X_3165378_SNP [dm3] X_3271345_SNP [dm6]	T	A	6.947e^-4	1	INTRON dnc
2L	10835838	2L_10835838_SNP [dm3] 2L_10835838_SNP [dm6]	T	C	6.952e^-4	1	INTRON Nos
3L	12596141	3L_12596141_SNP [dm3] 3L_12603041_SNP [dm6]	G	A	6.971e^-4	1	INTERGENIC
X	19003031	X_19003031_INS [dm3] X_19108998_INS [dm6]	A	ACTACA	6.981e^-4	1	INTERGENIC
X	19003038	X_19003038_DEL [dm3] X_19109005_DEL [dm6]	AT	A	6.981e^-4	1	INTERGENIC
2L	9327687	2L_9327687_SNP [dm3] 2L_9327687_SNP [dm6]	T	G	6.990e^-4	1	UPSTREAM CG17005 DOWNSTREAM CR45456 & 1 other INTERGENIC
X	12363141	X_12363141_SNP [dm3] X_12469108_SNP [dm6]	A	T	6.995e^-4	1	INTRON CG42258
3R	10429876	3R_10429876_SNP [dm3] 3R_14604154_SNP [dm6]	G	A	7.008e^-4	1	INTRON stumps
3L	19037206	3L_19037206_SNP [dm3] 3L_19044106_SNP [dm6]	A	C	7.025e^-4	1	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14141936	2R_14141936_DEL [dm3] 2R_18254431_DEL [dm6]	AA	A	7.028e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15905865	3L_15905865_SNP [dm3] 3L_15912765_SNP [dm6]	A	G	7.035e^-4	1	INTRON sff
2R	14503417	2R_14503417_SNP [dm3] 2R_18615912_SNP [dm6]	A	C	7.048e^-4	1	UTR_3_PRIME CG5323 UPSTREAM CG5327 & 1 other DOWNSTREAM CG5493
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	7.063e^-4	1	INTERGENIC
2L	16172845	2L_16172845_SNP [dm3] 2L_16172845_SNP [dm6]	A	G	7.085e^-4	1	SYNONYMOUS_CODING Ca-alpha1D UTR_5_PRIME Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17772602	3R_17772602_SNP [dm3] 3R_21946880_SNP [dm6]	G	T	7.101e^-4	1	INTERGENIC
2R	14099021	2R_14099021_SNP [dm3] 2R_18211516_SNP [dm6]	G	C	7.108e^-4	1	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9964209	2L_9964209_SNP [dm3] 2L_9964209_SNP [dm6]	G	T	7.111e^-4	1	UTR_3_PRIME Dref UPSTREAM CG5850 DOWNSTREAM Dref
2R	3313520	2R_3313520_SNP [dm3] 2R_7426015_SNP [dm6]	A	G	7.111e^-4	1	INTRON so	TF binding site mE1_TFBS_cad
2L	17005701	2L_17005701_SNP [dm3] 2L_17005701_SNP [dm6]	T	C	7.113e^-4	1	INTERGENIC
3L	2871275	3L_2871275_SNP [dm3] 3L_2871275_SNP [dm6]	C	T	7.115e^-4	1	NON_SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14097839	2R_14097839_SNP [dm3] 2R_18210334_SNP [dm6]	T	G	7.139e^-4	1	EXON CR45147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2180453	2L_2180453_SNP [dm3] 2L_2180453_SNP [dm6]	T	G	7.153e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19833457	2R_19833457_SNP [dm3] 2R_23945934_SNP [dm6]	G	A	7.159e^-4	1	SYNONYMOUS_CODING Galphas
3R	17763030	3R_17763030_DEL [dm3] 3R_21937308_DEL [dm6]	AATAA	A	7.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	256339	2L_256339_SNP [dm3] 2L_256339_SNP [dm6]	G	A	7.173e^-4	1	INTRON CG3645
3R	26634135	3R_26634135_SNP [dm3] 3R_30808413_SNP [dm6]	T	A	7.173e^-4	1	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	11666173	2R_11666173_SNP [dm3] 2R_15778668_SNP [dm6]	A	T	7.179e^-4	1	INTRON Zasp52
2L	7788575	2L_7788575_SNP [dm3] 2L_7788575_SNP [dm6]	G	A	7.180e^-4	1	INTRON CG7149
3L	14013862	3L_14013862_SNP [dm3] 3L_14020762_SNP [dm6]	C	G	7.189e^-4	1	UTR_3_PRIME ptip DOWNSTREAM upSET
2L	2447906	2L_2447906_SNP [dm3] 2L_2447906_SNP [dm6]	T	A	7.195e^-4	1	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25457775	3R_25457775_SNP [dm3] 3R_29632053_SNP [dm6]	C	T	7.230e^-4	1	NON_SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2354873	2L_2354873_SNP [dm3] 2L_2354873_SNP [dm6]	G	A	7.234e^-4	1	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad
2R	18467115	2R_18467115_SNP [dm3] 2R_22579610_SNP [dm6]	G	A	7.249e^-4	1	INTRON dnr1
2L	13318031	2L_13318031_SNP [dm3] 2L_13318031_SNP [dm6]	G	C	7.262e^-4	1	INTRON CG43778
2L	22322677	2L_22322677_SNP [dm3] 2L_22322677_SNP [dm6]	G	A	7.302e^-4	1	INTRON CG17018
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	7.302e^-4	1	INTERGENIC
3L	17644946	3L_17644946_DEL [dm3] 3L_17651846_DEL [dm6]	GCGAGTG	G	7.306e^-4	1	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7169215	2L_7169215_SNP [dm3] 2L_7169215_SNP [dm6]	A	C	7.334e^-4	1	INTERGENIC
2L	17421288	2L_17421288_SNP [dm3] 2L_17421288_SNP [dm6]	C	T	7.335e^-4	1	INTRON Dif
2L	141836	2L_141836_SNP [dm3] 2L_141836_SNP [dm6]	A	G	7.345e^-4	1	SYNONYMOUS_CODING CG31974 UPSTREAM CG31976 & 1 other INTRON CG11455	TF binding site mE1_TFBS_sens
3L	16900417	3L_16900417_SNP [dm3] 3L_16907317_SNP [dm6]	G	A	7.350e^-4	1	DOWNSTREAM Lmpt INTRON Lmpt
3L	17875819	3L_17875819_SNP [dm3] 3L_17882719_SNP [dm6]	T	C	7.357e^-4	1	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
2R	13356915	2R_13356915_SNP [dm3] 2R_17469410_SNP [dm6]	A	T	7.369e^-4	1	UPSTREAM qkr54B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14324458	3R_14324458_SNP [dm3] 3R_18498736_SNP [dm6]	G	T	7.381e^-4	1	INTRON fru
X	17636391	X_17636391_SNP [dm3] X_17742358_SNP [dm6]	G	A	7.388e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	13869652	3R_13869652_DEL [dm3] 3R_18043930_DEL [dm6]	TA	C	7.393e^-4	1	INTERGENIC
2L	15029959	2L_15029959_SNP [dm3] 2L_15029959_SNP [dm6]	T	A	7.402e^-4	1	DOWNSTREAM CG33310 & 1 other INTRON GABA-B-R1
3R	26544469	3R_26544469_SNP [dm3] 3R_30718747_SNP [dm6]	T	A	7.406e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	15552671	X_15552671_SNP [dm3] X_15658638_SNP [dm6]	G	A	7.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	9946543	3R_9946543_SNP [dm3] 3R_14120821_SNP [dm6]	A	T	7.444e^-4	1	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9946551	3R_9946551_SNP [dm3] 3R_14120829_SNP [dm6]	A	G	7.444e^-4	1	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6962770	X_6962770_SNP [dm3] X_7068737_SNP [dm6]	T	A	7.468e^-4	1	UPSTREAM CG4607 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17305212	3R_17305212_SNP [dm3] 3R_21479490_SNP [dm6]	G	T	7.489e^-4	1	INTERGENIC
3R	17305218	3R_17305218_SNP [dm3] 3R_21479496_SNP [dm6]	C	T	7.489e^-4	1	INTERGENIC
2L	12487839	2L_12487839_SNP [dm3] 2L_12487839_SNP [dm6]	C	T	7.490e^-4	1	INTRON bun
2L	108547	2L_108547_SNP [dm3] 2L_108547_SNP [dm6]	A	G	7.495e^-4	1	INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7445000	2L_7445000_SNP [dm3] 2L_7445000_SNP [dm6]	C	T	7.497e^-4	1	UTR_3_PRIME CG5973 DOWNSTREAM santa-maria
2R	11449627	2R_11449627_SNP [dm3] 2R_15562122_SNP [dm6]	C	A	7.498e^-4	1	SYNONYMOUS_CODING CG12963 DOWNSTREAM CG8195
2L	2309000	2L_2309000_SNP [dm3] 2L_2309000_SNP [dm6]	T	C	7.502e^-4	1	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
2L	1087266	2L_1087266_SNP [dm3] 2L_1087266_SNP [dm6]	C	T	7.514e^-4	1	INTRON CG4629
X	18499139	X_18499139_SNP [dm3] X_18605106_SNP [dm6]	A	T	7.514e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8151488	X_8151488_SNP [dm3] X_8257455_SNP [dm6]	G	T	7.516e^-4	1	INTRON CG1632
2L	4048792	2L_4048792_SNP [dm3] 2L_4048792_SNP [dm6]	T	C	7.538e^-4	1	INTRON ed
3L	13274134	3L_13274134_SNP [dm3] 3L_13281034_SNP [dm6]	A	G	7.550e^-4	1	INTERGENIC
2R	2608048	2R_2608048_SNP [dm3] 2R_6720543_SNP [dm6]	C	T	7.556e^-4	1	DOWNSTREAM l_2_01289 INTERGENIC
3R	24582645	3R_24582645_SNP [dm3] 3R_28756923_SNP [dm6]	C	T	7.557e^-4	1	SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	147688	2L_147688_SNP [dm3] 2L_147688_SNP [dm6]	C	T	7.557e^-4	1	NON_SYNONYMOUS_CODING CG42399 INTRON CG11455
3R	17724428	3R_17724428_SNP [dm3] 3R_21898706_SNP [dm6]	C	T	7.558e^-4	1	INTRON CG6678
3R	20816185	3R_20816185_SNP [dm3] 3R_24990463_SNP [dm6]	G	A	7.564e^-4	1	INTRON tnc
3R	13895133	3R_13895133_SNP [dm3] 3R_18069411_SNP [dm6]	T	A	7.579e^-4	1	INTERGENIC
2R	11898373	2R_11898373_SNP [dm3] 2R_16010868_SNP [dm6]	G	A	7.582e^-4	1	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1249297	2L_1249297_SNP [dm3] 2L_1249297_SNP [dm6]	A	G	7.582e^-4	1	INTERGENIC
3L	14484001	3L_14484001_SNP [dm3] 3L_14490901_SNP [dm6]	A	C	7.585e^-4	1	INTRON bbg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2673834	3L_2673834_SNP [dm3] 3L_2673834_SNP [dm6]	A	T	7.586e^-4	1	INTRON Fife
3R	25275940	3R_25275940_SNP [dm3] 3R_29450218_SNP [dm6]	C	A	7.590e^-4	1	INTRON Ptp99A
2R	7554311	2R_7554311_SNP [dm3] 2R_11666806_SNP [dm6]	C	A	7.610e^-4	1	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	2357442	2L_2357442_SNP [dm3] 2L_2357442_SNP [dm6]	C	T	7.653e^-4	1	UPSTREAM CG9967 INTRON eys
2L	248106	2L_248106_DEL [dm3] 2L_248106_DEL [dm6]	CC	C	7.659e^-4	1	UPSTREAM CR44218 INTRON kis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	7.680e^-4	1	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	7.680e^-4	1	INTERGENIC
2L	2726436	2L_2726436_SNP [dm3] 2L_2726436_SNP [dm6]	T	A	7.693e^-4	1	INTRON CG31689
3L	11837196	3L_11837196_SNP [dm3] 3L_11844096_SNP [dm6]	T	G	7.714e^-4	1	INTERGENIC
3L	5675546	3L_5675546_SNP [dm3] 3L_5682446_SNP [dm6]	C	A	7.714e^-4	1	INTRON sif
3L	16146738	3L_16146738_SNP [dm3] 3L_16153638_SNP [dm6]	T	G	7.717e^-4	1	INTRON CG5151
3L	16146783	3L_16146783_SNP [dm3] 3L_16153683_SNP [dm6]	A	T	7.717e^-4	1	INTRON CG5151
X	3156094	X_3156094_SNP [dm3] X_3262061_SNP [dm6]	A	C	7.725e^-4	1	INTRON dnc
2L	19357789	2L_19357789_SNP [dm3] 2L_19357789_SNP [dm6]	A	G	7.730e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7472493	3L_7472493_SNP [dm3] 3L_7479393_SNP [dm6]	A	G	7.732e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	7445496	X_7445496_SNP [dm3] X_7551463_SNP [dm6]	G	T	7.745e^-4	1	INTERGENIC
2L	13719531	2L_13719531_SNP [dm3] 2L_13719531_SNP [dm6]	A	G	7.754e^-4	1	INTERGENIC
2L	13719544	2L_13719544_SNP [dm3] 2L_13719544_SNP [dm6]	G	C	7.754e^-4	1	INTERGENIC
2L	17005710	2L_17005710_SNP [dm3] 2L_17005710_SNP [dm6]	C	A	7.783e^-4	1	INTERGENIC
2L	2079327	2L_2079327_SNP [dm3] 2L_2079327_SNP [dm6]	G	A	7.816e^-4	1	UPSTREAM CG12674 INTRON dpr3
3R	25229934	3R_25229934_SNP [dm3] 3R_29404212_SNP [dm6]	G	A	7.816e^-4	1	INTRON Ptp99A
2L	15439498	2L_15439498_SNP [dm3] 2L_15439498_SNP [dm6]	T	C	7.834e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	19533955	3R_19533955_SNP [dm3] 3R_23708233_SNP [dm6]	A	T	7.843e^-4	1	UTR_3_PRIME CG31414 DOWNSTREAM CG31414	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19722629	2L_19722629_SNP [dm3] 2L_19722629_SNP [dm6]	C	A	7.850e^-4	1	INTRON Lar
X	17736541	X_17736541_SNP [dm3] X_17842508_SNP [dm6]	G	A	7.850e^-4	1	SYNONYMOUS_CODING e_y_1 DOWNSTREAM CG6398 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17222039	2L_17222039_SNP [dm3] 2L_17222039_SNP [dm6]	A	T	7.855e^-4	1	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	787451	2R_787451_SNP [dm3] 2R_4899946_SNP [dm6]	G	A	7.862e^-4	1	INTRON CG44102	transposable element FlyBase
X	8151386	X_8151386_SNP [dm3] X_8257353_SNP [dm6]	A	G	7.866e^-4	1	INTRON CG1632
3R	25399875	3R_25399875_SNP [dm3] 3R_29574153_SNP [dm6]	T	A	7.867e^-4	1	INTERGENIC
2R	19752014	2R_19752014_SNP [dm3] 2R_23864491_SNP [dm6]	A	T	7.878e^-4	1	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	11920491	X_11920491_SNP [dm3] X_12026458_SNP [dm6]	G	A	7.880e^-4	1	SYNONYMOUS_CODING Usp7	TF binding site mE1_TFBS_cad
2L	10868868	2L_10868868_SNP [dm3] 2L_10868868_SNP [dm6]	T	C	7.933e^-4	1	INTERGENIC
2R	1415839	2R_1415839_SNP [dm3] 2R_5528334_SNP [dm6]	G	T	7.943e^-4	1	INTRON CG30438	transposable element FlyBase
3L	13768453	3L_13768453_SNP [dm3] 3L_13775353_SNP [dm6]	C	A	7.946e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	235852	2L_235852_SNP [dm3] 2L_235852_SNP [dm6]	T	A	7.951e^-4	1	SYNONYMOUS_CODING kis	TF binding site mE1_TFBS_sens
2R	9663359	2R_9663359_SNP [dm3] 2R_13775854_SNP [dm6]	C	T	7.952e^-4	1	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8806825	2L_8806825_DEL [dm3] 2L_8806825_DEL [dm6]	TT	T	7.952e^-4	1	INTERGENIC
2L	8806998	2L_8806998_SNP [dm3] 2L_8806998_SNP [dm6]	G	A	7.952e^-4	1	INTERGENIC
3L	12353950	3L_12353950_SNP [dm3] 3L_12360850_SNP [dm6]	T	C	7.962e^-4	1	INTERGENIC
X	19003266	X_19003266_SNP [dm3] X_19109233_SNP [dm6]	A	C	7.969e^-4	1	INTERGENIC
2L	16071383	2L_16071383_SNP [dm3] 2L_16071383_SNP [dm6]	T	A	7.977e^-4	1	INTRON beat-Ia
3R	21456365	3R_21456365_SNP [dm3] 3R_25630643_SNP [dm6]	T	A	7.991e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8151420	X_8151420_SNP [dm3] X_8257387_SNP [dm6]	A	T	7.995e^-4	1	INTRON CG1632
2R	3071471	2R_3071471_SNP [dm3] 2R_7183966_SNP [dm6]	C	A	7.998e^-4	1	SYNONYMOUS_CODING CG30384 DOWNSTREAM CG30385 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10285972	3L_10285972_SNP [dm3] 3L_10292872_SNP [dm6]	T	C	8.003e^-4	1	INTERGENIC
3L	12997653	3L_12997653_SNP [dm3] 3L_13004553_SNP [dm6]	G	A	8.007e^-4	1	INTERGENIC
2R	14536355	2R_14536355_SNP [dm3] 2R_18648850_SNP [dm6]	G	T	8.023e^-4	1	INTRON SP2637
2L	5265828	2L_5265828_SNP [dm3] 2L_5265828_SNP [dm6]	C	A	8.023e^-4	1	UTR_3_PRIME Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	10959193	2L_10959193_SNP [dm3] 2L_10959193_SNP [dm6]	C	T	8.026e^-4	1	INTRON dpr2
2L	10959194	2L_10959194_SNP [dm3] 2L_10959194_SNP [dm6]	A	G	8.026e^-4	1	INTRON dpr2
3R	20775266	3R_20775266_SNP [dm3] 3R_24949544_SNP [dm6]	C	A	8.027e^-4	1	DOWNSTREAM CG13646 INTERGENIC
2R	18862770	2R_18862770_SNP [dm3] 2R_22975247_SNP [dm6]	A	C	8.027e^-4	1	INTERGENIC
2R	19829915	2R_19829915_SNP [dm3] 2R_23942392_SNP [dm6]	T	A	8.028e^-4	1	UPSTREAM Galphas DOWNSTREAM Tal INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	10285851	3L_10285851_SNP [dm3] 3L_10292751_SNP [dm6]	A	G	8.034e^-4	1	INTERGENIC
3L	10285910	3L_10285910_SNP [dm3] 3L_10292810_SNP [dm6]	G	C	8.034e^-4	1	INTERGENIC
3L	10285942	3L_10285942_SNP [dm3] 3L_10292842_SNP [dm6]	T	C	8.034e^-4	1	INTERGENIC
3R	21702745	3R_21702745_SNP [dm3] 3R_25877023_SNP [dm6]	T	A	8.043e^-4	1	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi
2L	17221534	2L_17221534_SNP [dm3] 2L_17221534_SNP [dm6]	C	A	8.052e^-4	1	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11000608	3L_11000608_SNP [dm3] 3L_11007508_SNP [dm6]	C	T	8.068e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12663959	2R_12663959_SNP [dm3] 2R_16776454_SNP [dm6]	T	C	8.090e^-4	1	DOWNSTREAM Arp53D INTERGENIC
3R	19049832	3R_19049832_SNP [dm3] 3R_23224110_SNP [dm6]	C	T	8.096e^-4	1	INTRON cnc
3R	11481344	3R_11481344_SNP [dm3] 3R_15655622_SNP [dm6]	G	T	8.105e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14100892	3L_14100892_SNP [dm3] 3L_14107792_SNP [dm6]	A	T	8.108e^-4	1	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10001014	2R_10001014_SNP [dm3] 2R_14113509_SNP [dm6]	G	A	8.109e^-4	1	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	15072795	3L_15072795_SNP [dm3] 3L_15079695_SNP [dm6]	C	T	8.113e^-4	1	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	10294687	2L_10294687_SNP [dm3] 2L_10294687_SNP [dm6]	A	T	8.120e^-4	1	INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2501981	2L_2501981_SNP [dm3] 2L_2501981_SNP [dm6]	T	A	8.128e^-4	1	INTERGENIC
X	17602876	X_17602876_INS [dm3] X_17708843_INS [dm6]	A	AAT	8.134e^-4	1	INTRON CG8173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3578914	3L_3578914_SNP [dm3] 3L_3578914_SNP [dm6]	T	G	8.164e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14196580	2R_14196580_SNP [dm3] 2R_18309075_SNP [dm6]	A	C	8.171e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
X	20563150	X_20563150_DEL [dm3] X_20692123_DEL [dm6]	TTCTCCT	T	8.181e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	15067244	2L_15067244_SNP [dm3] 2L_15067244_SNP [dm6]	T	A	8.189e^-4	1	SYNONYMOUS_CODING vig INTRON vas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14090573	2R_14090573_DEL [dm3] 2R_18203068_DEL [dm6]	TG	T	8.189e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14110864	3L_14110864_SNP [dm3] 3L_14117764_SNP [dm6]	C	A	8.192e^-4	1	INTRON Sox21b
X	8151481	X_8151481_SNP [dm3] X_8257448_SNP [dm6]	A	T	8.197e^-4	1	INTRON CG1632
2L	8732361	2L_8732361_SNP [dm3] 2L_8732361_SNP [dm6]	C	T	8.207e^-4	1	INTRON raw
2R	8874279	2R_8874279_SNP [dm3] 2R_12986774_SNP [dm6]	T	G	8.207e^-4	1	DOWNSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	12272479	3L_12272479_SNP [dm3] 3L_12279379_SNP [dm6]	T	G	8.209e^-4	1	SYNONYMOUS_CODING CG10426
2R	1047098	2R_1047098_SNP [dm3] 2R_5159593_SNP [dm6]	A	G	8.217e^-4	1	INTERGENIC	transposable element FlyBase
3R	14664079	3R_14664079_INS [dm3] 3R_18838357_INS [dm6]	A	ATTTCAACAGC...	8.219e^-4	1	INTRON CG18208
2R	3204660	2R_3204660_SNP [dm3] 2R_7317155_SNP [dm6]	A	C	8.230e^-4	1	DOWNSTREAM Dscam1 INTERGENIC
2R	3211860	2R_3211860_SNP [dm3] 2R_7324355_SNP [dm6]	G	A	8.230e^-4	1	INTRON Dscam1
3L	9499388	3L_9499388_DEL [dm3] 3L_9506288_DEL [dm6]	AGA	G	8.231e^-4	1	UPSTREAM path DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11086634	2R_11086634_SNP [dm3] 2R_15199129_SNP [dm6]	T	G	8.232e^-4	1	UTR_3_PRIME GPHR
2L	9324741	2L_9324741_SNP [dm3] 2L_9324741_SNP [dm6]	T	C	8.240e^-4	1	INTERGENIC
X	21324966	X_21324966_SNP [dm3] X_21453939_SNP [dm6]	C	G	8.268e^-4	1	INTRON CG42343
3R	25411051	3R_25411051_SNP [dm3] 3R_29585329_SNP [dm6]	G	T	8.274e^-4	1	INTERGENIC
3R	25411055	3R_25411055_SNP [dm3] 3R_29585333_SNP [dm6]	C	G	8.274e^-4	1	INTERGENIC
2L	2798328	2L_2798328_SNP [dm3] 2L_2798328_SNP [dm6]	G	A	8.277e^-4	1	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	10235861	3L_10235861_SNP [dm3] 3L_10242761_SNP [dm6]	T	A	8.279e^-4	1	DOWNSTREAM CR44541 & 1 other INTERGENIC
2L	13591821	2L_13591821_SNP [dm3] 2L_13591821_SNP [dm6]	A	T	8.288e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4017908	X_4017908_SNP [dm3] X_4123875_SNP [dm6]	G	A	8.303e^-4	1	SYNONYMOUS_CODING tyf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	4017923	X_4017923_SNP [dm3] X_4123890_SNP [dm6]	C	T	8.303e^-4	1	SYNONYMOUS_CODING tyf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11370458	3L_11370458_SNP [dm3] 3L_11377358_SNP [dm6]	G	A	8.315e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	104361	2L_104361_SNP [dm3] 2L_104361_SNP [dm6]	T	C	8.324e^-4	1	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
3L	1080136	3L_1080136_SNP [dm3] 3L_1080136_SNP [dm6]	A	C	8.328e^-4	1	INTRON bab1	TF binding site mE1_TFBS_chinmo
2L	9325032	2L_9325032_SNP [dm3] 2L_9325032_SNP [dm6]	G	A	8.366e^-4	1	UPSTREAM CR45456 INTERGENIC
2R	14093005	2R_14093005_SNP [dm3] 2R_18205500_SNP [dm6]	A	G	8.378e^-4	1	INTERGENIC
2R	7703168	2R_7703168_INS [dm3] 2R_11815663_INS [dm6]	A	ATCACTTTA	8.379e^-4	1	INTERGENIC
3L	13422109	3L_13422109_SNP [dm3] 3L_13429009_SNP [dm6]	A	T	8.396e^-4	1	UTR_3_PRIME CG10713
3L	15596933	3L_15596933_INS [dm3] 3L_15603833_INS [dm6]	C	CAC	8.411e^-4	1	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
X	12754792	X_12754792_INS [dm3] X_12860759_INS [dm6]	A	AGTTATTC	8.431e^-4	1	INTRON Pde9
X	12754795	X_12754795_DEL [dm3] X_12860762_DEL [dm6]	AACTCGA	G	8.431e^-4	1	INTRON Pde9
X	7445493	X_7445493_SNP [dm3] X_7551460_SNP [dm6]	C	G	8.435e^-4	1	INTERGENIC
2L	9465066	2L_9465066_SNP [dm3] 2L_9465066_SNP [dm6]	G	A	8.440e^-4	1	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9465073	2L_9465073_SNP [dm3] 2L_9465073_SNP [dm6]	G	A	8.440e^-4	1	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12353368	2R_12353368_SNP [dm3] 2R_16465863_SNP [dm6]	T	C	8.446e^-4	1	UPSTREAM CheB53a INTERGENIC
2R	12728004	2R_12728004_SNP [dm3] 2R_16840499_SNP [dm6]	T	A	8.447e^-4	1	INTERGENIC
2L	61797	2L_61797_SNP [dm3] 2L_61797_SNP [dm6]	G	C	8.468e^-4	1	INTRON Cda5
2R	7147375	2R_7147375_SNP [dm3] 2R_11259870_SNP [dm6]	C	T	8.473e^-4	1	UTR_5_PRIME Cpr47Ec
2L	182725	2L_182725_SNP [dm3] 2L_182725_SNP [dm6]	A	G	8.475e^-4	1	UPSTREAM spen INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
2R	19408741	2R_19408741_SNP [dm3] 2R_23521218_SNP [dm6]	A	G	8.481e^-4	1	INTRON RabX1
X	15553586	X_15553586_SNP [dm3] X_15659553_SNP [dm6]	C	T	8.489e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve
2R	12546895	2R_12546895_SNP [dm3] 2R_16659390_SNP [dm6]	T	C	8.499e^-4	1	UPSTREAM Picot INTRON Picot
2R	12546961	2R_12546961_SNP [dm3] 2R_16659456_SNP [dm6]	C	A	8.499e^-4	1	UPSTREAM Picot INTRON Picot
2R	12547460	2R_12547460_SNP [dm3] 2R_16659955_SNP [dm6]	G	A	8.499e^-4	1	UPSTREAM Picot INTRON Picot
2R	12547583	2R_12547583_SNP [dm3] 2R_16660078_SNP [dm6]	G	A	8.499e^-4	1	UPSTREAM Picot INTRON Picot
2R	12548163	2R_12548163_INS [dm3] 2R_16660658_INS [dm6]	T	TATTATAATTATAATTATAT...	8.499e^-4	1	INTRON Picot
2R	12548241	2R_12548241_SNP [dm3] 2R_16660736_SNP [dm6]	C	T	8.499e^-4	1	INTRON Picot
2R	12548286	2R_12548286_SNP [dm3] 2R_16660781_SNP [dm6]	A	C	8.499e^-4	1	INTRON Picot
2R	12548424	2R_12548424_SNP [dm3] 2R_16660919_SNP [dm6]	G	C	8.499e^-4	1	INTRON Picot
3R	18031871	3R_18031871_SNP [dm3] 3R_22206149_SNP [dm6]	C	T	8.506e^-4	1	INTRON SKIP & 1 other
2L	13301791	2L_13301791_SNP [dm3] 2L_13301791_SNP [dm6]	C	A	8.523e^-4	1	DOWNSTREAM CG43778 & 1 other INTERGENIC
2R	13939860	2R_13939860_SNP [dm3] 2R_18052355_SNP [dm6]	C	A	8.525e^-4	1	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
2R	16987557	2R_16987557_SNP [dm3] 2R_21100052_SNP [dm6]	G	A	8.551e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8383213	2R_8383213_SNP [dm3] 2R_12495708_SNP [dm6]	A	T	8.553e^-4	1	UTR_5_PRIME s-cup INTRON fdl
2R	8383216	2R_8383216_SNP [dm3] 2R_12495711_SNP [dm6]	T	C	8.553e^-4	1	UTR_5_PRIME s-cup INTRON fdl
2L	169823	2L_169823_DEL [dm3] 2L_169823_DEL [dm6]	CT	C	8.571e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3316802	2R_3316802_SNP [dm3] 2R_7429297_SNP [dm6]	C	T	8.581e^-4	1	UPSTREAM CG11145 DOWNSTREAM CR44203 INTRON so	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16532099	X_16532099_SNP [dm3] X_16638066_SNP [dm6]	T	C	8.587e^-4	1	UTR_5_PRIME RpS19a UPSTREAM RpS19a & 1 other INTRON RpS19a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13708848	X_13708848_SNP [dm3] X_13814815_SNP [dm6]	T	A	8.601e^-4	1	SYNONYMOUS_CODING Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15234380	3R_15234380_SNP [dm3] 3R_19408658_SNP [dm6]	G	A	8.607e^-4	1	UPSTREAM CG11626 INTERGENIC
2L	10813148	2L_10813148_SNP [dm3] 2L_10813148_SNP [dm6]	T	A	8.609e^-4	1	INTRON Nos	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14367079	2R_14367079_SNP [dm3] 2R_18479574_SNP [dm6]	T	G	8.612e^-4	1	INTRON CG30116
2R	1618164	2R_1618164_SNP [dm3] 2R_5730659_SNP [dm6]	A	G	8.616e^-4	1	INTERGENIC	transposable element FlyBase
3R	13880480	3R_13880480_SNP [dm3] 3R_18054758_SNP [dm6]	G	A	8.626e^-4	1	INTERGENIC
3L	15842331	3L_15842331_SNP [dm3] 3L_15849231_SNP [dm6]	C	G	8.668e^-4	1	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
2R	20210134	2R_20210134_SNP [dm3] 2R_24322611_SNP [dm6]	T	C	8.672e^-4	1	INTERGENIC
3L	12944179	3L_12944179_SNP [dm3] 3L_12951079_SNP [dm6]	G	A	8.689e^-4	1	INTERGENIC
3L	10611676	3L_10611676_SNP [dm3] 3L_10618576_SNP [dm6]	G	C	8.696e^-4	1	INTERGENIC
3L	10611682	3L_10611682_SNP [dm3] 3L_10618582_SNP [dm6]	G	T	8.696e^-4	1	INTERGENIC
2R	19781346	2R_19781346_SNP [dm3] 2R_23893823_SNP [dm6]	T	C	8.710e^-4	1	SYNONYMOUS_CODING Upf3 DOWNSTREAM DNA-ligI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13906419	3L_13906419_SNP [dm3] 3L_13913319_SNP [dm6]	T	G	8.721e^-4	1	INTRON Rgl
2R	14595158	2R_14595158_SNP [dm3] 2R_18707653_SNP [dm6]	T	C	8.743e^-4	1	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
X	13641749	X_13641749_SNP [dm3] X_13747716_SNP [dm6]	G	A	8.744e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18370924	3L_18370924_SNP [dm3] 3L_18377824_SNP [dm6]	G	A	8.776e^-4	1	INTERGENIC
2L	7611704	2L_7611704_SNP [dm3] 2L_7611704_SNP [dm6]	T	A	8.811e^-4	1	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
3R	3629949	3R_3629949_SNP [dm3] 3R_7804227_SNP [dm6]	T	C	8.814e^-4	1	NON_SYNONYMOUS_CODING CG18268 DOWNSTREAM CG2993
3R	3668630	3R_3668630_SNP [dm3] 3R_7842908_SNP [dm6]	G	T	8.814e^-4	1	INTRON CG34384
2L	7788322	2L_7788322_SNP [dm3] 2L_7788322_SNP [dm6]	G	A	8.818e^-4	1	SYNONYMOUS_CODING CG7149
2R	1673674	2R_1673674_SNP [dm3] 2R_5786169_SNP [dm6]	T	G	8.820e^-4	1	INTERGENIC	transposable element FlyBase
2L	2301338	2L_2301338_SNP [dm3] 2L_2301338_SNP [dm6]	T	G	8.827e^-4	1	DOWNSTREAM CG31949 INTERGENIC
2L	16505120	2L_16505120_SNP [dm3] 2L_16505120_SNP [dm6]	C	T	8.829e^-4	1	INTRON Tpr2	TF binding site mE1_TFBS_cad
2L	9123364	2L_9123364_SNP [dm3] 2L_9123364_SNP [dm6]	G	A	8.857e^-4	1	UPSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19722640	2L_19722640_SNP [dm3] 2L_19722640_SNP [dm6]	G	A	8.873e^-4	1	INTRON Lar
2L	19722643	2L_19722643_SNP [dm3] 2L_19722643_SNP [dm6]	G	A	8.873e^-4	1	INTRON Lar
3R	18237300	3R_18237300_SNP [dm3] 3R_22411578_SNP [dm6]	T	C	8.884e^-4	1	UTR_5_PRIME lqfR UPSTREAM CG13850	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
2R	13552390	2R_13552390_DEL [dm3] 2R_17664885_DEL [dm6]	ACTTGGGCCA	A	8.890e^-4	1	UTR_5_PRIME CCHa1-R UPSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	8.905e^-4	1	INTRON CR44833 & 1 other
2L	7648460	2L_7648460_SNP [dm3] 2L_7648460_SNP [dm6]	G	A	8.922e^-4	1	INTRON Slob
3R	8761116	3R_8761116_DEL [dm3] 3R_12935394_DEL [dm6]	AGTTT	A	8.922e^-4	1	DOWNSTREAM beat-Vb INTERGENIC
2L	14924246	2L_14924246_SNP [dm3] 2L_14924246_SNP [dm6]	A	T	8.930e^-4	1	UPSTREAM CG3491 INTRON CG42313

Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_SC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results