DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.166e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.05521

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1499 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	15742241	2R_15742241_SNP [dm3] 2R_19854736_SNP [dm6]	G	A	5.688e^-7	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	14190966	2L_14190966_SNP [dm3] 2L_14190966_SNP [dm6]	A	G	2.276e^-6	0.809	INTRON Dyrk2
2R	12011490	2R_12011490_SNP [dm3] 2R_16123985_SNP [dm6]	C	T	3.229e^-6	0.809	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	15742229	2R_15742229_SNP [dm3] 2R_19854724_SNP [dm6]	G	A	3.648e^-6	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3755412	3L_3755412_SNP [dm3] 3L_3755412_SNP [dm6]	T	A	3.920e^-6	0.809	UPSTREAM ppk27 INTRON CG32264
3L	2559825	3L_2559825_SNP [dm3] 3L_2559825_SNP [dm6]	T	A	5.467e^-6	0.809	INTRON msn
3R	17680946	3R_17680946_SNP [dm3] 3R_21855224_SNP [dm6]	A	G	5.828e^-6	0.809	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17680952	3R_17680952_SNP [dm3] 3R_21855230_SNP [dm6]	C	T	5.828e^-6	0.809	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15154495	2L_15154495_SNP [dm3] 2L_15154495_SNP [dm6]	C	T	5.979e^-6	0.809	INTERGENIC
2R	11428439	2R_11428439_SNP [dm3] 2R_15540934_SNP [dm6]	G	A	6.237e^-6	0.809	SYNONYMOUS_CODING CG8187 UPSTREAM Vha36-1 DOWNSTREAM CG30467	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13336270	2R_13336270_SNP [dm3] 2R_17448765_SNP [dm6]	C	T	7.333e^-6	0.809	UTR_3_PRIME mthl3
X	18274472	X_18274472_SNP [dm3] X_18380439_SNP [dm6]	A	G	8.550e^-6	0.809	SYNONYMOUS_CODING CG6179 UPSTREAM por	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	409947	3L_409947_SNP [dm3] 3L_409947_SNP [dm6]	C	T	1.036e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18276023	X_18276023_SNP [dm3] X_18381990_SNP [dm6]	T	A	1.132e^-5	0.809	DOWNSTREAM CG6179 INTRON betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18276050	X_18276050_SNP [dm3] X_18382017_SNP [dm6]	A	C	1.132e^-5	0.809	DOWNSTREAM CG6179 INTRON betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17929647	3L_17929647_SNP [dm3] 3L_17936547_SNP [dm6]	A	C	1.157e^-5	0.809	DOWNSTREAM CG43173 INTRON CG43174
2L	3871494	2L_3871494_SNP [dm3] 2L_3871494_SNP [dm6]	T	G	1.190e^-5	0.809	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
2L	3871502	2L_3871502_SNP [dm3] 2L_3871502_SNP [dm6]	A	C	1.190e^-5	0.809	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
2L	9735452	2L_9735452_SNP [dm3] 2L_9735452_SNP [dm6]	T	A	1.312e^-5	0.809	INTRON Nckx30C
3L	18489485	3L_18489485_SNP [dm3] 3L_18496385_SNP [dm6]	T	A	1.379e^-5	0.809	INTRON AstC-R2
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	1.379e^-5	0.809	INTRON cpo
2R	13022706	2R_13022706_SNP [dm3] 2R_17135201_SNP [dm6]	T	A	1.568e^-5	0.809	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400	transposable element FlyBase
3L	13198565	3L_13198565_SNP [dm3] 3L_13205465_SNP [dm6]	C	T	1.585e^-5	0.809	INTERGENIC
3L	13198585	3L_13198585_DEL [dm3] 3L_13205485_DEL [dm6]	CAATAATAC	C	1.585e^-5	0.809	INTERGENIC
3L	13198599	3L_13198599_SNP [dm3] 3L_13205499_SNP [dm6]	A	T	1.585e^-5	0.809	INTERGENIC
3L	13198606	3L_13198606_SNP [dm3] 3L_13205506_SNP [dm6]	A	G	1.585e^-5	0.809	INTERGENIC
3L	13198624	3L_13198624_SNP [dm3] 3L_13205524_SNP [dm6]	A	C	1.585e^-5	0.809	INTERGENIC
3L	13198645	3L_13198645_SNP [dm3] 3L_13205545_SNP [dm6]	T	C	1.585e^-5	0.809	INTERGENIC
3L	13198725	3L_13198725_INS [dm3] 3L_13205625_INS [dm6]	A	ATATTA	1.585e^-5	0.809	INTERGENIC
3L	13198727	3L_13198727_DEL [dm3] 3L_13205627_DEL [dm6]	TTGCGTC	T	1.585e^-5	0.809	INTERGENIC
X	19647173	X_19647173_SNP [dm3] X_19753140_SNP [dm6]	T	G	1.611e^-5	0.809	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3L	7440778	3L_7440778_SNP [dm3] 3L_7447678_SNP [dm6]	G	T	1.613e^-5	0.809	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17785987	3R_17785987_SNP [dm3] 3R_21960265_SNP [dm6]	T	C	1.661e^-5	0.809	INTRON Eip93F
3L	9753723	3L_9753723_SNP [dm3] 3L_9760623_SNP [dm6]	C	A	1.774e^-5	0.809	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3088883	2L_3088883_SNP [dm3] 2L_3088883_SNP [dm6]	C	G	1.797e^-5	0.809	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088901	2L_3088901_SNP [dm3] 2L_3088901_SNP [dm6]	C	G	1.797e^-5	0.809	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088903	2L_3088903_SNP [dm3] 2L_3088903_SNP [dm6]	T	C	1.797e^-5	0.809	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088933	2L_3088933_SNP [dm3] 2L_3088933_SNP [dm6]	C	A	1.797e^-5	0.809	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13413265	3R_13413265_SNP [dm3] 3R_17587543_SNP [dm6]	T	G	1.802e^-5	0.809	INTERGENIC
3R	27277773	3R_27277773_SNP [dm3] 3R_31452051_SNP [dm6]	T	C	1.810e^-5	0.809	INTRON Gprk2	TF binding site mE1_TFBS_cad
2R	15742067	2R_15742067_SNP [dm3] 2R_19854562_SNP [dm6]	C	A	1.889e^-5	0.809	INTERGENIC
3L	3582380	3L_3582380_SNP [dm3] 3L_3582380_SNP [dm6]	G	A	2.094e^-5	0.809	INTRON Eip63E
3L	3582551	3L_3582551_SNP [dm3] 3L_3582551_SNP [dm6]	A	T	2.094e^-5	0.809	INTRON Eip63E	TF binding site mE1_TFBS_inv
3L	3582607	3L_3582607_SNP [dm3] 3L_3582607_SNP [dm6]	T	A	2.094e^-5	0.809	INTRON Eip63E	TF binding site mE1_TFBS_inv
3L	3582616	3L_3582616_SNP [dm3] 3L_3582616_SNP [dm6]	C	T	2.094e^-5	0.809	INTRON Eip63E	TF binding site mE1_TFBS_inv
3L	3693654	3L_3693654_SNP [dm3] 3L_3693654_SNP [dm6]	G	T	2.094e^-5	0.809	DOWNSTREAM CR43485 INTERGENIC
3L	3803698	3L_3803698_SNP [dm3] 3L_3803698_SNP [dm6]	C	T	2.094e^-5	0.809	DOWNSTREAM ntc INTRON CG32264
2R	12011772	2R_12011772_SNP [dm3] 2R_16124267_SNP [dm6]	T	A	2.253e^-5	0.853	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3R	6252747	3R_6252747_SNP [dm3] 3R_10427025_SNP [dm6]	C	T	2.304e^-5	0.854	INTERGENIC
3L	13198710	3L_13198710_SNP [dm3] 3L_13205610_SNP [dm6]	T	A	2.510e^-5	0.912	INTERGENIC
2R	12011764	2R_12011764_SNP [dm3] 2R_16124259_SNP [dm6]	G	T	2.567e^-5	0.914	SPLICE_SITE_REGION CG30095 UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3R	8111740	3R_8111740_SNP [dm3] 3R_12286018_SNP [dm6]	T	A	2.695e^-5	0.915	INTRON svp
3L	5000122	3L_5000122_SNP [dm3] 3L_5000122_SNP [dm6]	A	T	2.837e^-5	0.915	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6746350	2R_6746350_SNP [dm3] 2R_10858845_SNP [dm6]	T	G	2.851e^-5	0.915	UPSTREAM CR44302 INTRON CG30015
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	2.873e^-5	0.915	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	12011813	2R_12011813_SNP [dm3] 2R_16124308_SNP [dm6]	T	A	2.873e^-5	0.915	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2L	3088896	2L_3088896_SNP [dm3] 2L_3088896_SNP [dm6]	G	T	2.952e^-5	0.915	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3576944	2L_3576944_SNP [dm3] 2L_3576944_SNP [dm6]	G	A	2.967e^-5	0.915	DOWNSTREAM CG43815 INTERGENIC
2R	13022757	2R_13022757_DEL [dm3] 2R_17135252_DEL [dm6]	AA	A	2.998e^-5	0.915	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400	transposable element FlyBase
3L	13198724	3L_13198724_SNP [dm3] 3L_13205624_SNP [dm6]	A	T	3.021e^-5	0.915	INTERGENIC
3R	25166558	3R_25166558_SNP [dm3] 3R_29340836_SNP [dm6]	A	T	3.152e^-5	0.939	INTERGENIC
2R	11394515	2R_11394515_SNP [dm3] 2R_15507010_SNP [dm6]	C	A	3.235e^-5	0.948	NON_SYNONYMOUS_CODING Ir52d	TF binding site mE1_TFBS_HSA
2R	13336250	2R_13336250_DEL [dm3] 2R_17448745_DEL [dm6]	ATA	A	3.300e^-5	0.952	UTR_3_PRIME mthl3
2L	10039575	2L_10039575_SNP [dm3] 2L_10039575_SNP [dm6]	A	T	3.551e^-5	0.998	DOWNSTREAM obst-B INTERGENIC
2R	19244613	2R_19244613_SNP [dm3] 2R_23357090_SNP [dm6]	T	G	3.571e^-5	0.998	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18274265	X_18274265_SNP [dm3] X_18380232_SNP [dm6]	C	G	3.736e^-5	0.998	SYNONYMOUS_CODING CG6179 UPSTREAM por	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	14190955	2L_14190955_SNP [dm3] 2L_14190955_SNP [dm6]	A	G	3.816e^-5	0.998	INTRON Dyrk2
2L	14920525	2L_14920525_SNP [dm3] 2L_14920525_SNP [dm6]	C	T	3.817e^-5	0.998	INTRON CG42313
2L	10358018	2L_10358018_SNP [dm3] 2L_10358018_SNP [dm6]	G	A	3.904e^-5	0.998	UTR_3_PRIME CG5045 DOWNSTREAM Cand1 & 1 other
2R	13230658	2R_13230658_SNP [dm3] 2R_17343153_SNP [dm6]	T	C	3.906e^-5	0.998	INTRON mbl
2R	5309887	2R_5309887_SNP [dm3] 2R_9422382_SNP [dm6]	A	G	3.943e^-5	0.998	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12011568	2R_12011568_SNP [dm3] 2R_16124063_SNP [dm6]	C	T	4.047e^-5	0.998	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	12011582	2R_12011582_SNP [dm3] 2R_16124077_SNP [dm6]	C	T	4.047e^-5	0.998	SPLICE_SITE_REGION CG30095 UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	12011805	2R_12011805_SNP [dm3] 2R_16124300_SNP [dm6]	G	A	4.185e^-5	0.998	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	12011816	2R_12011816_SNP [dm3] 2R_16124311_SNP [dm6]	C	T	4.185e^-5	0.998	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
X	18274373	X_18274373_SNP [dm3] X_18380340_SNP [dm6]	A	G	4.219e^-5	0.998	SYNONYMOUS_CODING CG6179 UPSTREAM por	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10736639	X_10736639_SNP [dm3] X_10842606_SNP [dm6]	C	A	4.243e^-5	0.998	NON_SYNONYMOUS_CODING CG15209 DOWNSTREAM CG32669 INTRON sbr
X	18273658	X_18273658_SNP [dm3] X_18379625_SNP [dm6]	A	G	4.324e^-5	0.998	SYNONYMOUS_CODING por UPSTREAM CG6179	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19299675	2R_19299675_SNP [dm3] 2R_23412152_SNP [dm6]	A	G	4.374e^-5	0.998	DOWNSTREAM CG9812 INTERGENIC
2R	9107939	2R_9107939_SNP [dm3] 2R_13220434_SNP [dm6]	C	T	4.490e^-5	0.998	SYNONYMOUS_CODING CG17059 UPSTREAM CG4646 DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17680882	3R_17680882_SNP [dm3] 3R_21855160_SNP [dm6]	A	G	4.506e^-5	0.998	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17680897	3R_17680897_SNP [dm3] 3R_21855175_SNP [dm6]	C	T	4.506e^-5	0.998	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21943996	3R_21943996_SNP [dm3] 3R_26118274_SNP [dm6]	T	G	4.562e^-5	0.998	INTRON CG31324
2R	15153312	2R_15153312_SNP [dm3] 2R_19265807_SNP [dm6]	C	T	4.697e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7410630	3L_7410630_SNP [dm3] 3L_7417530_SNP [dm6]	A	G	4.764e^-5	1	INTERGENIC
3R	17680664	3R_17680664_SNP [dm3] 3R_21854942_SNP [dm6]	G	A	4.816e^-5	1	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	6267495	3R_6267495_SNP [dm3] 3R_10441773_SNP [dm6]	T	C	4.879e^-5	1	INTERGENIC
3R	17544331	3R_17544331_SNP [dm3] 3R_21718609_SNP [dm6]	A	T	4.948e^-5	1	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	4.968e^-5	1	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3L	1723350	3L_1723350_SNP [dm3] 3L_1723350_SNP [dm6]	T	C	4.984e^-5	1	UPSTREAM CG18171 INTRON drpr
2R	13022780	2R_13022780_SNP [dm3] 2R_17135275_SNP [dm6]	A	T	5.025e^-5	1	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
2R	15742383	2R_15742383_SNP [dm3] 2R_19854878_SNP [dm6]	C	T	5.167e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10634110	2R_10634110_SNP [dm3] 2R_14746605_SNP [dm6]	T	A	5.202e^-5	1	UTR_3_PRIME Dro UPSTREAM AttA DOWNSTREAM Dro
3R	20924771	3R_20924771_SNP [dm3] 3R_25099049_SNP [dm6]	C	T	5.226e^-5	1	INTRON CG33095 & 1 other
3R	5475976	3R_5475976_SNP [dm3] 3R_9650254_SNP [dm6]	A	T	5.244e^-5	1	UTR_3_PRIME Dh44 DOWNSTREAM Dh44 & 1 other
2R	17956194	2R_17956194_SNP [dm3] 2R_22068689_SNP [dm6]	C	A	5.490e^-5	1	DOWNSTREAM CG44249 INTRON Snp
3R	6264469	3R_6264469_SNP [dm3] 3R_10438747_SNP [dm6]	G	C	5.701e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6276969	3R_6276969_SNP [dm3] 3R_10451247_SNP [dm6]	C	T	5.701e^-5	1	INTERGENIC
3L	18070745	3L_18070745_SNP [dm3] 3L_18077645_SNP [dm6]	T	C	5.782e^-5	1	EXON CR45392	TF binding site mE1_TFBS_Trl
3R	10878027	3R_10878027_SNP [dm3] 3R_15052305_SNP [dm6]	T	G	5.785e^-5	1	INTERGENIC
3R	6271479	3R_6271479_INS [dm3] 3R_10445757_INS [dm6]	G	GCAATATGAAAAGCACA...	5.885e^-5	1	INTERGENIC
2R	7726516	2R_7726516_SNP [dm3] 2R_11839011_SNP [dm6]	C	T	5.944e^-5	1	INTRON Sobp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5710422	3L_5710422_SNP [dm3] 3L_5717322_SNP [dm6]	G	A	5.964e^-5	1	INTRON sif
2L	9735676	2L_9735676_SNP [dm3] 2L_9735676_SNP [dm6]	A	T	6.042e^-5	1	UPSTREAM CG13117 INTRON Nckx30C
2R	15153185	2R_15153185_SNP [dm3] 2R_19265680_SNP [dm6]	A	G	6.111e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	15153188	2R_15153188_SNP [dm3] 2R_19265683_SNP [dm6]	T	C	6.111e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	1396641	X_1396641_SNP [dm3] X_1502608_SNP [dm6]	G	A	6.132e^-5	1	INTRON inc & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	3862029	3L_3862029_SNP [dm3] 3L_3862029_SNP [dm6]	G	T	6.229e^-5	1	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
2L	5895011	2L_5895011_SNP [dm3] 2L_5895011_SNP [dm6]	G	A	6.244e^-5	1	INTERGENIC
2R	6104392	2R_6104392_DEL [dm3] 2R_10216887_DEL [dm6]	CGCC	C	6.305e^-5	1	INTRON Hr46 & 1 other
3L	4447164	3L_4447164_SNP [dm3] 3L_4447164_SNP [dm6]	T	C	6.359e^-5	1	UPSTREAM CR45739 INTRON CG12607
3R	25166539	3R_25166539_SNP [dm3] 3R_29340817_SNP [dm6]	T	C	6.377e^-5	1	INTERGENIC
X	2001613	X_2001613_SNP [dm3] X_2107580_SNP [dm6]	T	C	6.416e^-5	1	UPSTREAM csw INTRON csw
3L	9753690	3L_9753690_SNP [dm3] 3L_9760590_SNP [dm6]	A	G	6.431e^-5	1	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13198541	3L_13198541_SNP [dm3] 3L_13205441_SNP [dm6]	G	A	6.603e^-5	1	INTERGENIC
2L	8390793	2L_8390793_SNP [dm3] 2L_8390793_SNP [dm6]	T	C	6.716e^-5	1	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2319274	3L_2319274_SNP [dm3] 3L_2319274_SNP [dm6]	T	C	6.741e^-5	1	DOWNSTREAM CR45426 INTERGENIC
X	2002086	X_2002086_SNP [dm3] X_2108053_SNP [dm6]	T	C	6.776e^-5	1	UPSTREAM csw INTRON csw	TF binding site mE1_TFBS_sens
2L	6098390	2L_6098390_SNP [dm3] 2L_6098390_SNP [dm6]	A	G	6.821e^-5	1	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8171825	2L_8171825_SNP [dm3] 2L_8171825_SNP [dm6]	T	C	6.936e^-5	1	INTRON Piezo
2R	15328969	2R_15328969_SNP [dm3] 2R_19441464_SNP [dm6]	C	T	7.014e^-5	1	SYNONYMOUS_CODING Spt5 UPSTREAM RpL11	TF binding site mE1_TFBS_sens
3L	1102145	3L_1102145_SNP [dm3] 3L_1102145_SNP [dm6]	A	T	7.020e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_Trl
2L	9691787	2L_9691787_SNP [dm3] 2L_9691787_SNP [dm6]	C	G	7.045e^-5	1	INTRON Pka-C1
3R	17680926	3R_17680926_SNP [dm3] 3R_21855204_SNP [dm6]	A	C	7.080e^-5	1	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17681943	3R_17681943_SNP [dm3] 3R_21856221_SNP [dm6]	A	T	7.080e^-5	1	UTR_5_PRIME glec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2632729	X_2632729_SNP [dm3] X_2738696_SNP [dm6]	C	T	7.331e^-5	1	UTR_5_PRIME crm UPSTREAM crm DOWNSTREAM Syx4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	7440662	3L_7440662_SNP [dm3] 3L_7447562_SNP [dm6]	G	A	7.401e^-5	1	INTRON CG42458
3L	7440731	3L_7440731_SNP [dm3] 3L_7447631_SNP [dm6]	A	G	7.401e^-5	1	INTRON CG42458
2R	1080257	2R_1080257_DEL [dm3] 2R_5192752_DEL [dm6]	CAATCGACAGCTTACTGCAT...	C	7.431e^-5	1	INTRON Nipped-A
2R	1080299	2R_1080299_DEL [dm3] 2R_5192794_DEL [dm6]	GTTCG	G	7.431e^-5	1	INTRON Nipped-A
2R	19675945	2R_19675945_SNP [dm3] 2R_23788422_SNP [dm6]	T	C	7.452e^-5	1	INTRON CG9850
2R	19675952	2R_19675952_SNP [dm3] 2R_23788429_SNP [dm6]	G	A	7.452e^-5	1	INTRON CG9850
3L	12676753	3L_12676753_SNP [dm3] 3L_12683653_SNP [dm6]	C	T	7.514e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9405653	2L_9405653_SNP [dm3] 2L_9405653_SNP [dm6]	T	A	7.515e^-5	1	INTRON Shawl
2L	17924147	2L_17924147_SNP [dm3] 2L_17924147_SNP [dm6]	A	G	7.596e^-5	1	INTERGENIC
3L	14507004	3L_14507004_SNP [dm3] 3L_14513904_SNP [dm6]	T	A	7.655e^-5	1	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3L	13373022	3L_13373022_SNP [dm3] 3L_13379922_SNP [dm6]	C	T	7.913e^-5	1	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5895016	2L_5895016_SNP [dm3] 2L_5895016_SNP [dm6]	G	A	8.013e^-5	1	INTERGENIC
2L	9125072	2L_9125072_SNP [dm3] 2L_9125072_SNP [dm6]	A	T	8.078e^-5	1	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21228098	3R_21228098_SNP [dm3] 3R_25402376_SNP [dm6]	T	G	8.106e^-5	1	INTRON Fur1
3L	7206266	3L_7206266_SNP [dm3] 3L_7213166_SNP [dm6]	G	A	8.122e^-5	1	INTERGENIC
2R	6746247	2R_6746247_SNP [dm3] 2R_10858742_SNP [dm6]	G	A	8.272e^-5	1	UPSTREAM CR44302 INTRON CG30015
3R	22554275	3R_22554275_SNP [dm3] 3R_26728553_SNP [dm6]	G	A	8.275e^-5	1	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8588235	3L_8588235_SNP [dm3] 3L_8595135_SNP [dm6]	C	G	8.416e^-5	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2L	7955855	2L_7955855_SNP [dm3] 2L_7955855_SNP [dm6]	C	A	8.788e^-5	1	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	13908255	2L_13908255_SNP [dm3] 2L_13908255_SNP [dm6]	C	T	8.813e^-5	1	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10534437	2L_10534437_SNP [dm3] 2L_10534437_SNP [dm6]	C	T	8.813e^-5	1	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
2L	5894883	2L_5894883_SNP [dm3] 2L_5894883_SNP [dm6]	C	T	8.828e^-5	1	UPSTREAM Acp26Aa INTERGENIC
2L	5091938	2L_5091938_SNP [dm3] 2L_5091938_SNP [dm6]	A	G	8.906e^-5	1	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
2L	5806572	2L_5806572_SNP [dm3] 2L_5806572_SNP [dm6]	A	C	8.928e^-5	1	NON_SYNONYMOUS_CODING CG11034 SYNONYMOUS_CODING CG11034
3R	6276956	3R_6276956_SNP [dm3] 3R_10451234_SNP [dm6]	C	G	8.989e^-5	1	INTERGENIC
2R	15152982	2R_15152982_SNP [dm3] 2R_19265477_SNP [dm6]	T	C	9.011e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	6746057	2R_6746057_SNP [dm3] 2R_10858552_SNP [dm6]	G	T	9.058e^-5	1	INTRON CG30015
3R	21953565	3R_21953565_SNP [dm3] 3R_26127843_SNP [dm6]	T	A	9.250e^-5	1	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
2L	9125690	2L_9125690_SNP [dm3] 2L_9125690_SNP [dm6]	C	T	9.299e^-5	1	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19675944	2R_19675944_SNP [dm3] 2R_23788421_SNP [dm6]	A	G	9.343e^-5	1	INTRON CG9850
2L	3155548	2L_3155548_SNP [dm3] 2L_3155548_SNP [dm6]	A	G	9.459e^-5	1	INTRON Mad	TF binding site mE1_TFBS_cad
3R	22554693	3R_22554693_SNP [dm3] 3R_26728971_SNP [dm6]	G	C	9.465e^-5	1	NON_SYNONYMOUS_CODING CG14245 INTRON CG14246
3R	22555026	3R_22555026_SNP [dm3] 3R_26729304_SNP [dm6]	A	C	9.465e^-5	1	UTR_3_PRIME CG14245 DOWNSTREAM CG14245 INTRON CG14246
3R	24537910	3R_24537910_SNP [dm3] 3R_28712188_SNP [dm6]	T	C	9.496e^-5	1	INTRON htt
3R	22552060	3R_22552060_SNP [dm3] 3R_26726338_SNP [dm6]	G	A	9.533e^-5	1	SYNONYMOUS_CODING CG14244 UPSTREAM CG14246
3R	22552256	3R_22552256_SNP [dm3] 3R_26726534_SNP [dm6]	C	A	9.533e^-5	1	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	22552281	3R_22552281_SNP [dm3] 3R_26726559_SNP [dm6]	A	G	9.533e^-5	1	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	22552472	3R_22552472_INS [dm3] 3R_26726750_INS [dm6]	A	AAAGT	9.533e^-5	1	UPSTREAM CG14246 DOWNSTREAM CG14244 INTERGENIC
3L	7440700	3L_7440700_SNP [dm3] 3L_7447600_SNP [dm6]	T	C	9.547e^-5	1	INTRON CG42458
2R	17736037	2R_17736037_SNP [dm3] 2R_21848532_SNP [dm6]	C	T	9.555e^-5	1	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
3L	399122	3L_399122_SNP [dm3] 3L_399122_SNP [dm6]	T	A	9.555e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3536372	3L_3536372_SNP [dm3] 3L_3536372_SNP [dm6]	C	A	9.627e^-5	1	INTRON Eip63E
3L	2714098	3L_2714098_SNP [dm3] 3L_2714098_SNP [dm6]	A	C	9.672e^-5	1	INTERGENIC
X	17160110	X_17160110_SNP [dm3] X_17266077_SNP [dm6]	G	A	9.777e^-5	1	INTRON f	TF binding site BDTNP1_TFBS_dl
X	18275169	X_18275169_SNP [dm3] X_18381136_SNP [dm6]	G	A	9.784e^-5	1	DOWNSTREAM betaCOP INTRON CG6179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14759210	X_14759210_SNP [dm3] X_14865177_SNP [dm6]	T	G	9.848e^-5	1	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15460241	2R_15460241_SNP [dm3] 2R_19572736_SNP [dm6]	C	A	9.915e^-5	1	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5000115	3L_5000115_SNP [dm3] 3L_5000115_SNP [dm6]	G	A	9.974e^-5	1	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21946524	3R_21946524_SNP [dm3] 3R_26120802_SNP [dm6]	T	C	1.011e^-4	1	INTRON CG31324
2R	10666450	2R_10666450_SNP [dm3] 2R_14778945_SNP [dm6]	T	C	1.027e^-4	1	INTRON kn	regulatory region REDfly_CRMs
2L	10534488	2L_10534488_SNP [dm3] 2L_10534488_SNP [dm6]	A	T	1.029e^-4	1	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
2R	1080219	2R_1080219_SNP [dm3] 2R_5192714_SNP [dm6]	G	A	1.042e^-4	1	INTRON Nipped-A
3R	17681080	3R_17681080_SNP [dm3] 3R_21855358_SNP [dm6]	G	A	1.047e^-4	1	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6270056	3R_6270056_SNP [dm3] 3R_10444334_SNP [dm6]	G	T	1.064e^-4	1	INTERGENIC
3R	22552249	3R_22552249_SNP [dm3] 3R_26726527_SNP [dm6]	G	A	1.067e^-4	1	UTR_3_PRIME CG14244 UPSTREAM CG14246
3L	7257948	3L_7257948_SNP [dm3] 3L_7264848_SNP [dm6]	A	T	1.077e^-4	1	UPSTREAM CG14830 INTERGENIC
2R	16458472	2R_16458472_SNP [dm3] 2R_20570967_SNP [dm6]	G	C	1.078e^-4	1	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21228090	3R_21228090_SNP [dm3] 3R_25402368_SNP [dm6]	A	T	1.078e^-4	1	INTRON Fur1
3R	22552277	3R_22552277_SNP [dm3] 3R_26726555_SNP [dm6]	C	T	1.085e^-4	1	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	13780986	3R_13780986_DEL [dm3] 3R_17955264_DEL [dm6]	TT	T	1.093e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cad
2R	4290924	2R_4290924_SNP [dm3] 2R_8403419_SNP [dm6]	T	A	1.106e^-4	1	INTRON CG2121
2L	14722213	2L_14722213_INS [dm3] 2L_14722213_INS [dm6]	T	TT	1.119e^-4	1	INTERGENIC
2L	5806377	2L_5806377_SNP [dm3] 2L_5806377_SNP [dm6]	G	T	1.120e^-4	1	INTRON CG11034
2R	18722342	2R_18722342_SNP [dm3] 2R_22834819_SNP [dm6]	C	A	1.120e^-4	1	DOWNSTREAM CG30265 INTRON CG12490
3L	12560215	3L_12560215_SNP [dm3] 3L_12567115_SNP [dm6]	T	A	1.124e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6388037	2L_6388037_SNP [dm3] 2L_6388037_SNP [dm6]	G	A	1.130e^-4	1	INTRON CG42368
3L	418283	3L_418283_SNP [dm3] 3L_418283_SNP [dm6]	C	G	1.156e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	18275218	X_18275218_SNP [dm3] X_18381185_SNP [dm6]	G	A	1.157e^-4	1	SYNONYMOUS_CODING CG6179 DOWNSTREAM betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8588271	3L_8588271_SNP [dm3] 3L_8595171_SNP [dm6]	T	C	1.160e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2L	15242377	2L_15242377_SNP [dm3] 2L_15242377_SNP [dm6]	C	T	1.172e^-4	1	INTRON ZnT35C
2R	6895177	2R_6895177_SNP [dm3] 2R_11007672_SNP [dm6]	C	T	1.179e^-4	1	INTRON luna
2R	6746133	2R_6746133_SNP [dm3] 2R_10858628_SNP [dm6]	A	G	1.184e^-4	1	INTRON CG30015
2R	14718043	2R_14718043_SNP [dm3] 2R_18830538_SNP [dm6]	C	T	1.191e^-4	1	START_GAINED CG15082 UTR_5_PRIME CG15082 UPSTREAM CG15097 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5572278	3L_5572278_SNP [dm3] 3L_5579178_SNP [dm6]	G	A	1.192e^-4	1	INTERGENIC
3L	5572330	3L_5572330_SNP [dm3] 3L_5579230_SNP [dm6]	C	T	1.192e^-4	1	INTERGENIC
3L	3671608	3L_3671608_SNP [dm3] 3L_3671608_SNP [dm6]	C	T	1.195e^-4	1	INTERGENIC
3L	8684353	3L_8684353_SNP [dm3] 3L_8691253_SNP [dm6]	C	T	1.198e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19211856	3R_19211856_SNP [dm3] 3R_23386134_SNP [dm6]	A	G	1.201e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13336050	3L_13336050_SNP [dm3] 3L_13342950_SNP [dm6]	T	G	1.207e^-4	1	DOWNSTREAM CR44559 INTERGENIC
3L	11208193	3L_11208193_SNP [dm3] 3L_11215093_SNP [dm6]	C	G	1.208e^-4	1	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2R	15742494	2R_15742494_SNP [dm3] 2R_19854989_SNP [dm6]	G	T	1.223e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22552374	3R_22552374_SNP [dm3] 3R_26726652_SNP [dm6]	C	A	1.242e^-4	1	UTR_3_PRIME CG14244 UPSTREAM CG14246
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	1.245e^-4	1	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21774378	2L_21774378_SNP [dm3] 2L_21774378_SNP [dm6]	G	A	1.257e^-4	1	SYNONYMOUS_CODING CG31612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	25321801	3R_25321801_SNP [dm3] 3R_29496079_SNP [dm6]	T	A	1.270e^-4	1	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22554093	3R_22554093_SNP [dm3] 3R_26728371_SNP [dm6]	G	A	1.272e^-4	1	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16832683	X_16832683_SNP [dm3] X_16938650_SNP [dm6]	A	C	1.278e^-4	1	UTR_3_PRIME wus DOWNSTREAM CG4928
2L	1787593	2L_1787593_SNP [dm3] 2L_1787593_SNP [dm6]	G	C	1.287e^-4	1	INTERGENIC
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	1.320e^-4	1	INTRON cpo
2L	5616059	2L_5616059_SNP [dm3] 2L_5616059_SNP [dm6]	T	C	1.322e^-4	1	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	9033763	2L_9033763_SNP [dm3] 2L_9033763_SNP [dm6]	G	A	1.329e^-4	1	INTERGENIC
3L	415503	3L_415503_SNP [dm3] 3L_415503_SNP [dm6]	C	T	1.348e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	9872254	2L_9872254_SNP [dm3] 2L_9872254_SNP [dm6]	A	C	1.358e^-4	1	INTRON nAChRalpha6
2R	6961523	2R_6961523_INS [dm3] 2R_11074018_INS [dm6]	A	AA	1.360e^-4	1	INTRON luna
2R	16839043	2R_16839043_DEL [dm3] 2R_20951538_DEL [dm6]	AAAGAGCATGA...	A	1.372e^-4	1	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5580029	2L_5580029_SNP [dm3] 2L_5580029_SNP [dm6]	G	A	1.390e^-4	1	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8807981	3L_8807981_SNP [dm3] 3L_8814881_SNP [dm6]	G	A	1.390e^-4	1	INTERGENIC
2L	6886174	2L_6886174_SNP [dm3] 2L_6886174_SNP [dm6]	T	C	1.399e^-4	1	INTRON Nlg2
2R	13325101	2R_13325101_SNP [dm3] 2R_17437596_SNP [dm6]	A	C	1.413e^-4	1	INTRON EDTP
2R	11085349	2R_11085349_SNP [dm3] 2R_15197844_SNP [dm6]	T	A	1.424e^-4	1	INTERGENIC
2R	2992198	2R_2992198_SNP [dm3] 2R_7104693_SNP [dm6]	T	C	1.438e^-4	1	INTRON esn
2R	15257394	2R_15257394_DEL [dm3] 2R_19369889_DEL [dm6]	AA	A	1.468e^-4	1	SPLICE_SITE_REGION CG9416 INTRON CG9416
3L	5183731	3L_5183731_SNP [dm3] 3L_5190631_SNP [dm6]	G	A	1.478e^-4	1	INTRON shep
3R	22551772	3R_22551772_SNP [dm3] 3R_26726050_SNP [dm6]	G	T	1.483e^-4	1	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23783156	3R_23783156_SNP [dm3] 3R_27957434_SNP [dm6]	T	C	1.501e^-4	1	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad
3L	5572306	3L_5572306_SNP [dm3] 3L_5579206_SNP [dm6]	G	A	1.503e^-4	1	INTERGENIC
2L	5861287	2L_5861287_SNP [dm3] 2L_5861287_SNP [dm6]	A	T	1.507e^-4	1	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	5894986	2L_5894986_SNP [dm3] 2L_5894986_SNP [dm6]	C	T	1.524e^-4	1	INTERGENIC
2L	5038538	2L_5038538_SNP [dm3] 2L_5038538_SNP [dm6]	A	G	1.529e^-4	1	SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3688868	3L_3688868_SNP [dm3] 3L_3688868_SNP [dm6]	C	T	1.531e^-4	1	EXON CR43484
3L	12035289	3L_12035289_SNP [dm3] 3L_12042189_SNP [dm6]	T	C	1.540e^-4	1	UPSTREAM CG6793 INTRON rols
X	9869755	X_9869755_INS [dm3] X_9975722_INS [dm6]	C	CATAA	1.545e^-4	1	INTRON CG43386
3L	7440770	3L_7440770_SNP [dm3] 3L_7447670_SNP [dm6]	T	A	1.567e^-4	1	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11227649	2R_11227649_SNP [dm3] 2R_15340144_SNP [dm6]	C	T	1.578e^-4	1	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	25061249	3R_25061249_SNP [dm3] 3R_29235527_SNP [dm6]	T	C	1.578e^-4	1	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15388471	X_15388471_SNP [dm3] X_15494438_SNP [dm6]	A	C	1.578e^-4	1	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	15388477	X_15388477_SNP [dm3] X_15494444_SNP [dm6]	G	A	1.578e^-4	1	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2R	10230160	2R_10230160_SNP [dm3] 2R_14342655_SNP [dm6]	A	G	1.580e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_HSA
2L	5806784	2L_5806784_SNP [dm3] 2L_5806784_SNP [dm6]	G	A	1.605e^-4	1	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14427843	2R_14427843_SNP [dm3] 2R_18540338_SNP [dm6]	G	A	1.609e^-4	1	DOWNSTREAM Pepck & 1 other INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3R	21953528	3R_21953528_INS [dm3] 3R_26127806_INS [dm6]	A	AA	1.610e^-4	1	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
2R	8317248	2R_8317248_SNP [dm3] 2R_12429743_SNP [dm6]	C	G	1.619e^-4	1	SYNONYMOUS_CODING Nup54 UPSTREAM CG43204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8317305	2R_8317305_SNP [dm3] 2R_12429800_SNP [dm6]	C	G	1.619e^-4	1	SYNONYMOUS_CODING Nup54 UPSTREAM CG43204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8079313	X_8079313_SNP [dm3] X_8185280_SNP [dm6]	C	T	1.627e^-4	1	INTRON sdt
2L	9415771	2L_9415771_SNP [dm3] 2L_9415771_SNP [dm6]	A	C	1.639e^-4	1	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2993198	X_2993198_SNP [dm3] X_3099165_SNP [dm6]	A	G	1.651e^-4	1	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7440775	3L_7440775_SNP [dm3] 3L_7447675_SNP [dm6]	A	T	1.656e^-4	1	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4600732	3L_4600732_SNP [dm3] 3L_4600732_SNP [dm6]	A	T	1.660e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4600750	3L_4600750_SNP [dm3] 3L_4600750_SNP [dm6]	G	A	1.660e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4164755	2L_4164755_SNP [dm3] 2L_4164755_SNP [dm6]	G	C	1.660e^-4	1	INTRON Or24a
2L	4164764	2L_4164764_SNP [dm3] 2L_4164764_SNP [dm6]	G	A	1.660e^-4	1	INTRON Or24a
2R	13687572	2R_13687572_SNP [dm3] 2R_17800067_SNP [dm6]	C	T	1.665e^-4	1	UTR_3_PRIME Dhit DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20311400	3R_20311400_SNP [dm3] 3R_24485678_SNP [dm6]	C	A	1.670e^-4	1	UTR_5_PRIME nAChRalpha2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9414636	2L_9414636_SNP [dm3] 2L_9414636_SNP [dm6]	T	G	1.680e^-4	1	INTRON Shawl
2R	16984519	2R_16984519_SNP [dm3] 2R_21097014_SNP [dm6]	G	A	1.685e^-4	1	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22230367	3R_22230367_SNP [dm3] 3R_26404645_SNP [dm6]	T	A	1.689e^-4	1	UPSTREAM ppk15 INTERGENIC
3R	22230422	3R_22230422_SNP [dm3] 3R_26404700_SNP [dm6]	C	A	1.689e^-4	1	INTERGENIC
2L	16498871	2L_16498871_SNP [dm3] 2L_16498871_SNP [dm6]	G	A	1.702e^-4	1	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1317911	X_1317911_SNP [dm3] X_1423878_SNP [dm6]	C	T	1.703e^-4	1	INTRON futsch	TF binding site mE1_TFBS_cad
X	2004757	X_2004757_SNP [dm3] X_2110724_SNP [dm6]	A	C	1.741e^-4	1	INTRON csw	TF binding site mE1_TFBS_chinmo
3R	17673248	3R_17673248_SNP [dm3] 3R_21847526_SNP [dm6]	T	G	1.751e^-4	1	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
2R	10715794	2R_10715794_SNP [dm3] 2R_14828289_SNP [dm6]	A	G	1.759e^-4	1	INTERGENIC
3L	9770681	3L_9770681_SNP [dm3] 3L_9777581_SNP [dm6]	G	T	1.761e^-4	1	INTRON CG8177
3L	12070687	3L_12070687_SNP [dm3] 3L_12077587_SNP [dm6]	A	T	1.761e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5806706	2L_5806706_SNP [dm3] 2L_5806706_SNP [dm6]	C	T	1.761e^-4	1	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
3L	8537199	3L_8537199_SNP [dm3] 3L_8544099_SNP [dm6]	G	T	1.767e^-4	1	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10999487	2R_10999487_DEL [dm3] 2R_15111982_DEL [dm6]	CCCGAGTGCTGGGC...	C	1.768e^-4	1	INTERGENIC
3R	10193591	3R_10193591_SNP [dm3] 3R_14367869_SNP [dm6]	C	A	1.768e^-4	1	INTRON NK7.1
X	15810740	X_15810740_DEL [dm3] X_15916707_DEL [dm6]	AT	A	1.786e^-4	1	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
3R	11864785	3R_11864785_SNP [dm3] 3R_16039063_SNP [dm6]	G	A	1.787e^-4	1	SYNONYMOUS_CODING pnr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9967465	2L_9967465_SNP [dm3] 2L_9967465_SNP [dm6]	A	G	1.794e^-4	1	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12910788	3R_12910788_SNP [dm3] 3R_17085066_SNP [dm6]	T	A	1.795e^-4	1	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4516124	3L_4516124_SNP [dm3] 3L_4516124_SNP [dm6]	G	A	1.806e^-4	1	INTRON Tie	TF binding site mE1_TFBS_inv
3R	19015104	3R_19015104_SNP [dm3] 3R_23189382_SNP [dm6]	T	A	1.814e^-4	1	UPSTREAM cnc INTRON cnc	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	19608738	2L_19608738_SNP [dm3] 2L_19608738_SNP [dm6]	C	G	1.822e^-4	1	INTRON Lar
3R	25907637	3R_25907637_SNP [dm3] 3R_30081915_SNP [dm6]	A	C	1.827e^-4	1	INTRON sima
2L	6885819	2L_6885819_SNP [dm3] 2L_6885819_SNP [dm6]	T	C	1.827e^-4	1	INTRON Nlg2
3R	4487141	3R_4487141_SNP [dm3] 3R_8661419_SNP [dm6]	T	C	1.832e^-4	1	SYNONYMOUS_CODING p UPSTREAM bel
3L	8588112	3L_8588112_SNP [dm3] 3L_8595012_SNP [dm6]	A	G	1.842e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	19646788	2R_19646788_SNP [dm3] 2R_23759265_SNP [dm6]	G	A	1.850e^-4	1	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19678124	2R_19678124_SNP [dm3] 2R_23790601_SNP [dm6]	G	C	1.859e^-4	1	DOWNSTREAM CG15800 INTRON CG9850
X	1263681	X_1263681_SNP [dm3] X_1369648_SNP [dm6]	T	C	1.862e^-4	1	SYNONYMOUS_CODING CG14770 UPSTREAM ssx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sbb
2L	12149014	2L_12149014_SNP [dm3] 2L_12149014_SNP [dm6]	A	G	1.870e^-4	1	INTRON CG31760
2R	12522225	2R_12522225_SNP [dm3] 2R_16634720_SNP [dm6]	T	C	1.876e^-4	1	UTR_5_PRIME Alk	TF binding site BDTNP1_TFBS_twi
2L	9125046	2L_9125046_SNP [dm3] 2L_9125046_SNP [dm6]	C	T	1.880e^-4	1	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6098441	2L_6098441_SNP [dm3] 2L_6098441_SNP [dm6]	A	C	1.883e^-4	1	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15947024	3L_15947024_SNP [dm3] 3L_15953924_SNP [dm6]	T	A	1.889e^-4	1	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8334666	2L_8334666_SNP [dm3] 2L_8334666_SNP [dm6]	T	A	1.903e^-4	1	INTERGENIC
2L	13231813	2L_13231813_SNP [dm3] 2L_13231813_SNP [dm6]	A	T	1.905e^-4	1	UPSTREAM Prosalpha6T INTERGENIC	TF binding site mE1_TFBS_cad
2R	1786507	2R_1786507_SNP [dm3] 2R_5899002_SNP [dm6]	A	G	1.911e^-4	1	INTRON CG43366	TF binding site BDTNP1_TFBS_hb
X	8079306	X_8079306_SNP [dm3] X_8185273_SNP [dm6]	T	C	1.915e^-4	1	INTRON sdt
2L	17112979	2L_17112979_SNP [dm3] 2L_17112979_SNP [dm6]	A	G	1.915e^-4	1	INTERGENIC
3L	17770031	3L_17770031_INS [dm3] 3L_17776931_INS [dm6]	T	TC	1.922e^-4	1	INTERGENIC
X	17212310	X_17212310_SNP [dm3] X_17318277_SNP [dm6]	G	C	1.926e^-4	1	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1151800	3L_1151800_DEL [dm3] 3L_1151800_DEL [dm6]	AACAGATTTTCA...	A	1.931e^-4	1	INTRON bab2
3R	25063368	3R_25063368_SNP [dm3] 3R_29237646_SNP [dm6]	A	G	1.932e^-4	1	INTRON CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5685285	3R_5685285_SNP [dm3] 3R_9859563_SNP [dm6]	C	T	1.937e^-4	1	INTRON Teh1
2R	18722329	2R_18722329_SNP [dm3] 2R_22834806_SNP [dm6]	C	T	1.955e^-4	1	DOWNSTREAM CG30265 INTRON CG12490
2R	19181637	2R_19181637_SNP [dm3] 2R_23294114_SNP [dm6]	A	C	1.955e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15151796	2R_15151796_SNP [dm3] 2R_19264291_SNP [dm6]	A	C	1.970e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18496415	3L_18496415_SNP [dm3] 3L_18503315_SNP [dm6]	G	T	1.973e^-4	1	UPSTREAM AstC-R2 INTERGENIC
3R	21953547	3R_21953547_SNP [dm3] 3R_26127825_SNP [dm6]	T	A	1.974e^-4	1	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3R	21953557	3R_21953557_SNP [dm3] 3R_26127835_SNP [dm6]	T	C	1.974e^-4	1	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
2L	3155669	2L_3155669_DEL [dm3] 2L_3155669_DEL [dm6]	AC	A	1.982e^-4	1	INTRON Mad	TF binding site mE1_TFBS_cad
2L	13908282	2L_13908282_SNP [dm3] 2L_13908282_SNP [dm6]	G	A	2.004e^-4	1	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7253898	2L_7253898_SNP [dm3] 2L_7253898_SNP [dm6]	G	T	2.010e^-4	1	UPSTREAM CG13786 INTERGENIC
2L	10680412	2L_10680412_SNP [dm3] 2L_10680412_SNP [dm6]	C	T	2.015e^-4	1	UPSTREAM CG17105 DOWNSTREAM CG17104 EXON CR44180
3R	13970456	3R_13970456_SNP [dm3] 3R_18144734_SNP [dm6]	G	A	2.027e^-4	1	INTERGENIC
3L	8206920	3L_8206920_SNP [dm3] 3L_8213820_SNP [dm6]	T	A	2.029e^-4	1	DOWNSTREAM CG8006 INTERGENIC
2L	7957384	2L_7957384_DEL [dm3] 2L_7957384_DEL [dm6]	CA	G	2.037e^-4	1	INTRON Snoo
3L	4138335	3L_4138335_SNP [dm3] 3L_4138335_SNP [dm6]	C	T	2.048e^-4	1	SYNONYMOUS_CODING Rop UPSTREAM Ras64B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2403645	X_2403645_SNP [dm3] X_2509612_SNP [dm6]	T	A	2.061e^-4	1	INTRON trol
3L	7447070	3L_7447070_SNP [dm3] 3L_7453970_SNP [dm6]	T	C	2.062e^-4	1	UTR_3_PRIME CG42458
3R	17818588	3R_17818588_SNP [dm3] 3R_21992866_SNP [dm6]	T	A	2.068e^-4	1	INTRON Eip93F
2L	17649531	2L_17649531_DEL [dm3] 2L_17649531_DEL [dm6]	GC	G	2.075e^-4	1	UTR_3_PRIME CadN DOWNSTREAM CadN
3R	14084026	3R_14084026_SNP [dm3] 3R_18258304_SNP [dm6]	A	C	2.088e^-4	1	DOWNSTREAM moi & 1 other INTERGENIC
2L	12060708	2L_12060708_SNP [dm3] 2L_12060708_SNP [dm6]	G	C	2.102e^-4	1	NON_SYNONYMOUS_CODING Rab3-GAP
3R	24575128	3R_24575128_SNP [dm3] 3R_28749406_SNP [dm6]	A	G	2.104e^-4	1	SYNONYMOUS_CODING CG10000	TF binding site mE1_TFBS_chinmo
X	5607155	X_5607155_DEL [dm3] X_5713122_DEL [dm6]	AA	C	2.108e^-4	1	INTRON CG33080
3L	11208027	3L_11208027_SNP [dm3] 3L_11214927_SNP [dm6]	A	G	2.112e^-4	1	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2R	17956198	2R_17956198_SNP [dm3] 2R_22068693_SNP [dm6]	A	C	2.113e^-4	1	DOWNSTREAM CG44249 INTRON Snp
2R	18722436	2R_18722436_SNP [dm3] 2R_22834913_SNP [dm6]	C	G	2.115e^-4	1	DOWNSTREAM CG30265 INTRON CG12490
3R	26401883	3R_26401883_SNP [dm3] 3R_30576161_SNP [dm6]	C	A	2.164e^-4	1	UTR_3_PRIME tmod INTRON tmod
2R	5904225	2R_5904225_SNP [dm3] 2R_10016720_SNP [dm6]	T	C	2.172e^-4	1	INTRON Pka-R2
3L	4210000	3L_4210000_SNP [dm3] 3L_4210000_SNP [dm6]	T	G	2.190e^-4	1	UPSTREAM Cpr64Aa DOWNSTREAM Cpr64Ab INTRON CG43367
2L	15047121	2L_15047121_SNP [dm3] 2L_15047121_SNP [dm6]	C	T	2.192e^-4	1	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2R	14264475	2R_14264475_SNP [dm3] 2R_18376970_SNP [dm6]	C	T	2.206e^-4	1	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19828668	2R_19828668_SNP [dm3] 2R_23941145_SNP [dm6]	C	T	2.207e^-4	1	SYNONYMOUS_CODING Tal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17431467	X_17431467_SNP [dm3] X_17537434_SNP [dm6]	T	C	2.209e^-4	1	INTRON CG43658
2R	9631946	2R_9631946_SNP [dm3] 2R_13744441_SNP [dm6]	C	A	2.216e^-4	1	INTRON fas
2R	9631947	2R_9631947_SNP [dm3] 2R_13744442_SNP [dm6]	C	A	2.216e^-4	1	INTRON fas
3L	8537071	3L_8537071_SNP [dm3] 3L_8543971_SNP [dm6]	G	A	2.219e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15329997	3L_15329997_SNP [dm3] 3L_15336897_SNP [dm6]	G	A	2.220e^-4	1	UTR_5_PRIME Toll-6 DOWNSTREAM CR43992	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	15339299	3L_15339299_SNP [dm3] 3L_15346199_SNP [dm6]	C	A	2.220e^-4	1	INTERGENIC
3L	15339957	3L_15339957_SNP [dm3] 3L_15346857_SNP [dm6]	T	G	2.220e^-4	1	INTERGENIC
3L	15346398	3L_15346398_SNP [dm3] 3L_15353298_SNP [dm6]	T	C	2.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15346407	3L_15346407_SNP [dm3] 3L_15353307_SNP [dm6]	G	C	2.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15346435	3L_15346435_INS [dm3] 3L_15353335_INS [dm6]	A	AA	2.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15346689	3L_15346689_SNP [dm3] 3L_15353589_SNP [dm6]	T	A	2.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13339247	2L_13339247_SNP [dm3] 2L_13339247_SNP [dm6]	A	C	2.233e^-4	1	INTERGENIC
2R	12522027	2R_12522027_SNP [dm3] 2R_16634522_SNP [dm6]	A	G	2.251e^-4	1	SYNONYMOUS_CODING Alk
2L	8954244	2L_8954244_SNP [dm3] 2L_8954244_SNP [dm6]	G	A	2.255e^-4	1	SYNONYMOUS_CODING CG31886	TF binding site mE1_TFBS_HSA
2L	9966721	2L_9966721_SNP [dm3] 2L_9966721_SNP [dm6]	C	T	2.256e^-4	1	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11657102	2R_11657102_SNP [dm3] 2R_15769597_SNP [dm6]	C	G	2.259e^-4	1	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13146128	3R_13146128_SNP [dm3] 3R_17320406_SNP [dm6]	A	T	2.263e^-4	1	UTR_3_PRIME beat-IIa
3R	13709747	3R_13709747_SNP [dm3] 3R_17884025_SNP [dm6]	A	G	2.264e^-4	1	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3270781	2L_3270781_SNP [dm3] 2L_3270781_SNP [dm6]	A	C	2.265e^-4	1	NON_SYNONYMOUS_CODING CG3347
3L	18482877	3L_18482877_SNP [dm3] 3L_18489777_SNP [dm6]	G	A	2.278e^-4	1	INTRON AstC-R2
3L	5184010	3L_5184010_SNP [dm3] 3L_5190910_SNP [dm6]	G	T	2.290e^-4	1	INTRON shep
2L	8007538	2L_8007538_SNP [dm3] 2L_8007538_SNP [dm6]	T	C	2.291e^-4	1	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17770044	3L_17770044_SNP [dm3] 3L_17776944_SNP [dm6]	G	A	2.304e^-4	1	INTERGENIC
X	17668481	X_17668481_SNP [dm3] X_17774448_SNP [dm6]	T	C	2.309e^-4	1	INTRON unc-4	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	2.311e^-4	1	INTRON mam
2R	4266613	2R_4266613_SNP [dm3] 2R_8379108_SNP [dm6]	C	A	2.314e^-4	1	INTRON pdm3
3R	21903146	3R_21903146_INS [dm3] 3R_26077424_INS [dm6]	T	TT	2.319e^-4	1	UTR_3_PRIME dys INTRON dys	TF binding site mE1_TFBS_cad
X	6332679	X_6332679_SNP [dm3] X_6438646_SNP [dm6]	G	C	2.321e^-4	1	INTRON CG42340
3L	978062	3L_978062_SNP [dm3] 3L_978062_SNP [dm6]	G	A	2.322e^-4	1	INTRON Glut1
2L	9740581	2L_9740581_SNP [dm3] 2L_9740581_SNP [dm6]	C	G	2.336e^-4	1	INTRON Nckx30C
X	18275494	X_18275494_SNP [dm3] X_18381461_SNP [dm6]	A	C	2.345e^-4	1	UTR_3_PRIME CG6179 DOWNSTREAM betaCOP
3R	23783183	3R_23783183_SNP [dm3] 3R_27957461_SNP [dm6]	G	A	2.347e^-4	1	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad
3L	11715659	3L_11715659_SNP [dm3] 3L_11722559_SNP [dm6]	G	A	2.363e^-4	1	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18699702	2R_18699702_SNP [dm3] 2R_22812197_SNP [dm6]	T	G	2.382e^-4	1	NON_SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo
3R	14093343	3R_14093343_SNP [dm3] 3R_18267621_SNP [dm6]	A	C	2.388e^-4	1	UPSTREAM CG18599 INTERGENIC
2R	8317335	2R_8317335_SNP [dm3] 2R_12429830_SNP [dm6]	A	G	2.389e^-4	1	SYNONYMOUS_CODING Nup54 UPSTREAM CG43204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17673328	3R_17673328_SNP [dm3] 3R_21847606_SNP [dm6]	C	T	2.403e^-4	1	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
2L	20254114	2L_20254114_SNP [dm3] 2L_20254114_SNP [dm6]	C	T	2.413e^-4	1	EXON CR40465
2R	4262779	2R_4262779_SNP [dm3] 2R_8375274_SNP [dm6]	G	A	2.423e^-4	1	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	974467	2R_974467_SNP [dm3] 2R_5086962_SNP [dm6]	G	A	2.432e^-4	1	INTERGENIC
X	8477222	X_8477222_SNP [dm3] X_8583189_SNP [dm6]	G	A	2.436e^-4	1	INTRON CG12065
2R	5283898	2R_5283898_SNP [dm3] 2R_9396393_SNP [dm6]	C	A	2.441e^-4	1	UTR_3_PRIME CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
2L	4306132	2L_4306132_SNP [dm3] 2L_4306132_SNP [dm6]	A	G	2.447e^-4	1	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
2L	13879859	2L_13879859_SNP [dm3] 2L_13879859_SNP [dm6]	C	T	2.449e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17770012	3L_17770012_SNP [dm3] 3L_17776912_SNP [dm6]	C	T	2.449e^-4	1	INTERGENIC
2L	15180943	2L_15180943_INS [dm3] 2L_15180943_INS [dm6]	C	CCCTTTTCCCC...	2.455e^-4	1	INTRON CG4168
3L	4207720	3L_4207720_SNP [dm3] 3L_4207720_SNP [dm6]	T	A	2.458e^-4	1	DOWNSTREAM Cpr64Aa INTRON CG43367
3L	11200430	3L_11200430_SNP [dm3] 3L_11207330_SNP [dm6]	A	G	2.466e^-4	1	SYNONYMOUS_CODING Ube3a	TF binding site mE1_TFBS_cad
2L	5099455	2L_5099455_SNP [dm3] 2L_5099455_SNP [dm6]	A	T	2.477e^-4	1	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	5860824	2L_5860824_SNP [dm3] 2L_5860824_SNP [dm6]	A	G	2.477e^-4	1	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3238210	3L_3238210_SNP [dm3] 3L_3238210_SNP [dm6]	C	G	2.479e^-4	1	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
X	18274214	X_18274214_SNP [dm3] X_18380181_SNP [dm6]	T	C	2.501e^-4	1	UTR_5_PRIME CG6179 UPSTREAM por	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	6151011	2R_6151011_SNP [dm3] 2R_10263506_SNP [dm6]	C	A	2.505e^-4	1	EXON CR30009	TF binding site mE1_TFBS_HSA
2R	6873061	2R_6873061_SNP [dm3] 2R_10985556_SNP [dm6]	C	A	2.514e^-4	1	INTRON luna
2L	10806818	2L_10806818_SNP [dm3] 2L_10806818_SNP [dm6]	G	A	2.529e^-4	1	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12525778	2R_12525778_SNP [dm3] 2R_16638273_SNP [dm6]	A	T	2.529e^-4	1	UPSTREAM Alk INTRON Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12282614	3L_12282614_SNP [dm3] 3L_12289514_SNP [dm6]	C	T	2.543e^-4	1	EXON CR45658
3R	23189845	3R_23189845_SNP [dm3] 3R_27364123_SNP [dm6]	C	T	2.549e^-4	1	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	17611850	3R_17611850_SNP [dm3] 3R_21786128_SNP [dm6]	T	C	2.561e^-4	1	UTR_3_PRIME CASK EXON CRG
3L	14233709	3L_14233709_SNP [dm3] 3L_14240609_SNP [dm6]	G	A	2.561e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6763131	3L_6763131_SNP [dm3] 3L_6770031_SNP [dm6]	T	A	2.563e^-4	1	INTERGENIC
3L	13080217	3L_13080217_SNP [dm3] 3L_13087117_SNP [dm6]	G	C	2.564e^-4	1	UPSTREAM CR45749 INTRON CG17300
2R	11656719	2R_11656719_SNP [dm3] 2R_15769214_SNP [dm6]	A	G	2.579e^-4	1	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2125243	2L_2125243_SNP [dm3] 2L_2125243_SNP [dm6]	C	G	2.579e^-4	1	INTERGENIC
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	2.589e^-4	1	SYNONYMOUS_CODING Mks1
3L	5611836	3L_5611836_SNP [dm3] 3L_5618736_SNP [dm6]	C	T	2.596e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5710545	3L_5710545_DEL [dm3] 3L_5717445_DEL [dm6]	GGGCACTGGCGTCGAAACTA...	G	2.601e^-4	1	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21729369	3R_21729369_SNP [dm3] 3R_25903647_SNP [dm6]	T	G	2.609e^-4	1	INTRON CR43259 & 1 other
3L	4213558	3L_4213558_SNP [dm3] 3L_4213558_SNP [dm6]	T	A	2.614e^-4	1	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8317110	2R_8317110_SNP [dm3] 2R_12429605_SNP [dm6]	G	A	2.619e^-4	1	SYNONYMOUS_CODING Nup54 UPSTREAM CG43204
3R	25166499	3R_25166499_SNP [dm3] 3R_29340777_SNP [dm6]	A	C	2.623e^-4	1	INTERGENIC
3L	12035406	3L_12035406_SNP [dm3] 3L_12042306_SNP [dm6]	T	C	2.626e^-4	1	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	12035410	3L_12035410_SNP [dm3] 3L_12042310_SNP [dm6]	C	G	2.626e^-4	1	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2R	10320388	2R_10320388_SNP [dm3] 2R_14432883_SNP [dm6]	A	G	2.646e^-4	1	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19454672	3R_19454672_SNP [dm3] 3R_23628950_SNP [dm6]	A	G	2.661e^-4	1	INTRON CG31145
2R	4277466	2R_4277466_SNP [dm3] 2R_8389961_SNP [dm6]	C	T	2.663e^-4	1	INTRON pdm3
2R	4280785	2R_4280785_SNP [dm3] 2R_8393280_SNP [dm6]	G	C	2.663e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_cad
2R	4291992	2R_4291992_SNP [dm3] 2R_8404487_SNP [dm6]	C	T	2.663e^-4	1	INTRON CG2121
2R	4301684	2R_4301684_SNP [dm3] 2R_8414179_SNP [dm6]	A	G	2.663e^-4	1	INTERGENIC
2R	4302145	2R_4302145_SNP [dm3] 2R_8414640_SNP [dm6]	G	T	2.663e^-4	1	INTERGENIC
2R	4424068	2R_4424068_SNP [dm3] 2R_8536563_SNP [dm6]	T	C	2.687e^-4	1	INTERGENIC
3R	22229199	3R_22229199_SNP [dm3] 3R_26403477_SNP [dm6]	T	A	2.696e^-4	1	INTRON ppk15
3R	22229209	3R_22229209_SNP [dm3] 3R_26403487_SNP [dm6]	T	C	2.696e^-4	1	INTRON ppk15
3R	22229220	3R_22229220_SNP [dm3] 3R_26403498_SNP [dm6]	A	G	2.696e^-4	1	INTRON ppk15
3R	22229228	3R_22229228_SNP [dm3] 3R_26403506_SNP [dm6]	C	A	2.696e^-4	1	INTRON ppk15
3R	22229236	3R_22229236_SNP [dm3] 3R_26403514_SNP [dm6]	A	G	2.696e^-4	1	INTRON ppk15
3L	8588277	3L_8588277_SNP [dm3] 3L_8595177_SNP [dm6]	G	A	2.700e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
X	11896397	X_11896397_INS [dm3] X_12002364_INS [dm6]	T	TT	2.711e^-4	1	UTR_5_PRIME fw UPSTREAM fw
2L	4214889	2L_4214889_SNP [dm3] 2L_4214889_SNP [dm6]	G	T	2.735e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17048168	2L_17048168_SNP [dm3] 2L_17048168_SNP [dm6]	G	T	2.740e^-4	1	START_GAINED CG15136 UTR_5_PRIME CG15136 UPSTREAM CG15136
3L	18753615	3L_18753615_SNP [dm3] 3L_18760515_SNP [dm6]	C	A	2.750e^-4	1	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	18753626	3L_18753626_SNP [dm3] 3L_18760526_SNP [dm6]	C	A	2.750e^-4	1	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3R	21953553	3R_21953553_SNP [dm3] 3R_26127831_SNP [dm6]	T	A	2.752e^-4	1	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3L	7440697	3L_7440697_SNP [dm3] 3L_7447597_SNP [dm6]	A	G	2.756e^-4	1	INTRON CG42458
2L	9030035	2L_9030035_DEL [dm3] 2L_9030035_DEL [dm6]	AA	C	2.769e^-4	1	INTRON CG9582 & 1 other
3L	22418216	3L_22418216_SNP [dm3] 3L_22425116_SNP [dm6]	A	T	2.776e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3536901	3L_3536901_DEL [dm3] 3L_3536901_DEL [dm6]	TCT	T	2.780e^-4	1	INTRON Eip63E
X	16833380	X_16833380_SNP [dm3] X_16939347_SNP [dm6]	C	T	2.784e^-4	1	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8587989	3L_8587989_SNP [dm3] 3L_8594889_SNP [dm6]	T	A	2.789e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10749445	3R_10749445_SNP [dm3] 3R_14923723_SNP [dm6]	T	C	2.799e^-4	1	DOWNSTREAM Sdr EXON CR45598
3L	11231486	3L_11231486_SNP [dm3] 3L_11238386_SNP [dm6]	G	T	2.801e^-4	1	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8116188	3R_8116188_DEL [dm3] 3R_12290466_DEL [dm6]	CACAGT	C	2.827e^-4	1	INTRON svp
2L	17552549	2L_17552549_SNP [dm3] 2L_17552549_SNP [dm6]	T	A	2.841e^-4	1	INTERGENIC
2L	17552572	2L_17552572_SNP [dm3] 2L_17552572_SNP [dm6]	C	T	2.841e^-4	1	INTERGENIC
2L	17552574	2L_17552574_INS [dm3] 2L_17552574_INS [dm6]	T	TT	2.841e^-4	1	INTERGENIC
2R	6348396	2R_6348396_SNP [dm3] 2R_10460891_SNP [dm6]	T	A	2.846e^-4	1	INTRON Galphao	TF binding site mE1_TFBS_inv
3L	8860778	3L_8860778_SNP [dm3] 3L_8867678_SNP [dm6]	C	A	2.877e^-4	1	INTRON dally
3L	1279024	3L_1279024_SNP [dm3] 3L_1279024_SNP [dm6]	A	G	2.881e^-4	1	INTRON CG32333
3L	1279109	3L_1279109_SNP [dm3] 3L_1279109_SNP [dm6]	T	A	2.881e^-4	1	INTRON CG32333
2L	9130033	2L_9130033_SNP [dm3] 2L_9130033_SNP [dm6]	A	G	2.906e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16722506	2R_16722506_SNP [dm3] 2R_20835001_SNP [dm6]	T	C	2.921e^-4	1	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
X	13996309	X_13996309_SNP [dm3] X_14102276_SNP [dm6]	A	C	2.938e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7579426	2R_7579426_SNP [dm3] 2R_11691921_SNP [dm6]	C	T	2.940e^-4	1	INTRON CG13197
2L	9954519	2L_9954519_SNP [dm3] 2L_9954519_SNP [dm6]	A	T	2.942e^-4	1	NON_SYNONYMOUS_CODING CG4709 UPSTREAM CG13126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	12405090	2L_12405090_DEL [dm3] 2L_12405090_DEL [dm6]	AA	A	2.943e^-4	1	UPSTREAM vir-1 INTRON vir-1
2R	18552207	2R_18552207_SNP [dm3] 2R_22664702_SNP [dm6]	T	C	2.949e^-4	1	UPSTREAM CG42867 DOWNSTREAM CG4250 INTERGENIC
3L	2311637	3L_2311637_SNP [dm3] 3L_2311637_SNP [dm6]	A	C	2.950e^-4	1	INTERGENIC
2L	16453210	2L_16453210_SNP [dm3] 2L_16453210_SNP [dm6]	T	A	2.956e^-4	1	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
3R	27235243	3R_27235243_SNP [dm3] 3R_31409521_SNP [dm6]	G	A	2.962e^-4	1	INTRON Gprk2
X	12383510	X_12383510_SNP [dm3] X_12489477_SNP [dm6]	T	A	2.987e^-4	1	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14111157	2R_14111157_SNP [dm3] 2R_18223652_SNP [dm6]	G	A	2.990e^-4	1	INTERGENIC
2R	14111170	2R_14111170_SNP [dm3] 2R_18223665_SNP [dm6]	A	G	2.990e^-4	1	INTERGENIC
2R	14111175	2R_14111175_SNP [dm3] 2R_18223670_SNP [dm6]	C	T	2.990e^-4	1	INTERGENIC
2R	9176326	2R_9176326_SNP [dm3] 2R_13288821_SNP [dm6]	A	T	2.992e^-4	1	INTRON Dh31-R
2L	13232365	2L_13232365_SNP [dm3] 2L_13232365_SNP [dm6]	G	A	2.993e^-4	1	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24539623	3R_24539623_SNP [dm3] 3R_28713901_SNP [dm6]	G	T	2.998e^-4	1	INTRON htt
3R	20260844	3R_20260844_SNP [dm3] 3R_24435122_SNP [dm6]	G	C	2.999e^-4	1	INTRON nAChRalpha1
3L	4209218	3L_4209218_SNP [dm3] 3L_4209218_SNP [dm6]	A	C	3.018e^-4	1	UPSTREAM Cpr64Aa INTRON CG43367	TF binding site mE1_TFBS_chinmo
2L	17649703	2L_17649703_SNP [dm3] 2L_17649703_SNP [dm6]	C	A	3.040e^-4	1	UTR_3_PRIME CadN DOWNSTREAM CadN
2R	7980516	2R_7980516_SNP [dm3] 2R_12093011_SNP [dm6]	C	T	3.068e^-4	1	INTRON jeb
2R	7980662	2R_7980662_SNP [dm3] 2R_12093157_SNP [dm6]	A	G	3.068e^-4	1	INTRON jeb
2R	7981384	2R_7981384_SNP [dm3] 2R_12093879_SNP [dm6]	T	G	3.068e^-4	1	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7981386	2R_7981386_INS [dm3] 2R_12093881_INS [dm6]	A	AAGGCT	3.068e^-4	1	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15388481	X_15388481_SNP [dm3] X_15494448_SNP [dm6]	C	A	3.068e^-4	1	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	14756999	X_14756999_SNP [dm3] X_14862966_SNP [dm6]	A	G	3.077e^-4	1	DOWNSTREAM CG9518 INTRON Flo2
2L	8144507	2L_8144507_SNP [dm3] 2L_8144507_SNP [dm6]	T	C	3.081e^-4	1	NON_SYNONYMOUS_CODING CG42763 UPSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	8144564	2L_8144564_SNP [dm3] 2L_8144564_SNP [dm6]	A	T	3.081e^-4	1	NON_SYNONYMOUS_CODING CG42763 UPSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	2209822	3R_2209822_SNP [dm3] 3R_6384100_SNP [dm6]	T	C	3.088e^-4	1	UPSTREAM godzilla INTRON godzilla	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12035373	3L_12035373_SNP [dm3] 3L_12042273_SNP [dm6]	T	A	3.090e^-4	1	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
X	8079314	X_8079314_DEL [dm3] X_8185281_DEL [dm6]	TAC	T	3.092e^-4	1	INTRON sdt
2R	18784040	2R_18784040_SNP [dm3] 2R_22896517_SNP [dm6]	T	C	3.105e^-4	1	UTR_5_PRIME nahoda DOWNSTREAM CG3700 INTRON nahoda	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3259677	X_3259677_SNP [dm3] X_3365644_SNP [dm6]	G	A	3.105e^-4	1	INTERGENIC
X	6605697	X_6605697_SNP [dm3] X_6711664_SNP [dm6]	A	G	3.105e^-4	1	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6605699	X_6605699_SNP [dm3] X_6711666_SNP [dm6]	C	T	3.105e^-4	1	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21843437	3L_21843437_SNP [dm3] 3L_21850337_SNP [dm6]	C	A	3.110e^-4	1	INTRON mub
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	3.112e^-4	1	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17852857	2R_17852857_SNP [dm3] 2R_21965352_SNP [dm6]	T	G	3.115e^-4	1	INTRON ppk9
X	8202637	X_8202637_SNP [dm3] X_8308604_SNP [dm6]	C	T	3.121e^-4	1	INTRON nAChRalpha3
3L	3673401	3L_3673401_SNP [dm3] 3L_3673401_SNP [dm6]	T	A	3.123e^-4	1	INTERGENIC
3L	477181	3L_477181_SNP [dm3] 3L_477181_SNP [dm6]	T	C	3.130e^-4	1	INTRON klar
3L	17240409	3L_17240409_DEL [dm3] 3L_17247309_DEL [dm6]	TATAT	C	3.135e^-4	1	INTRON CR43870	transposable element FlyBase
2L	5099715	2L_5099715_SNP [dm3] 2L_5099715_SNP [dm6]	T	C	3.136e^-4	1	DOWNSTREAM CG4230 INTRON CG8680	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	10784214	3L_10784214_SNP [dm3] 3L_10791114_SNP [dm6]	T	G	3.177e^-4	1	INTERGENIC
2L	17256933	2L_17256933_SNP [dm3] 2L_17256933_SNP [dm6]	T	A	3.179e^-4	1	INTRON beat-IIIc
2R	6894922	2R_6894922_SNP [dm3] 2R_11007417_SNP [dm6]	T	G	3.181e^-4	1	INTRON luna
2R	4303055	2R_4303055_SNP [dm3] 2R_8415550_SNP [dm6]	C	A	3.189e^-4	1	INTERGENIC
2L	12148867	2L_12148867_SNP [dm3] 2L_12148867_SNP [dm6]	C	G	3.206e^-4	1	INTRON CG31760
3R	17686867	3R_17686867_SNP [dm3] 3R_21861145_SNP [dm6]	A	C	3.209e^-4	1	UPSTREAM CR45644 DOWNSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10783297	X_10783297_DEL [dm3] X_10889264_DEL [dm6]	TT	T	3.235e^-4	1	INTRON Ork1
2L	8390940	2L_8390940_SNP [dm3] 2L_8390940_SNP [dm6]	C	T	3.249e^-4	1	SYNONYMOUS_CODING CG42820	TF binding site mE1_TFBS_HSA
3L	17770009	3L_17770009_SNP [dm3] 3L_17776909_SNP [dm6]	G	T	3.252e^-4	1	INTERGENIC
3L	14395920	3L_14395920_SNP [dm3] 3L_14402820_SNP [dm6]	T	A	3.278e^-4	1	UPSTREAM CG3868 DOWNSTREAM stwl INTERGENIC
X	6219857	X_6219857_SNP [dm3] X_6325824_SNP [dm6]	A	G	3.284e^-4	1	SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	12522243	2R_12522243_SNP [dm3] 2R_16634738_SNP [dm6]	T	C	3.284e^-4	1	UTR_5_PRIME Alk	TF binding site BDTNP1_TFBS_twi
X	16004308	X_16004308_SNP [dm3] X_16110275_SNP [dm6]	C	T	3.288e^-4	1	INTERGENIC
2R	14992711	2R_14992711_SNP [dm3] 2R_19105206_SNP [dm6]	C	G	3.289e^-4	1	INTRON 5-HT1A
3L	7600960	3L_7600960_SNP [dm3] 3L_7607860_SNP [dm6]	G	T	3.292e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9654361	2L_9654361_SNP [dm3] 2L_9654361_SNP [dm6]	C	T	3.312e^-4	1	SYNONYMOUS_CODING Apoltp
3L	11888562	3L_11888562_SNP [dm3] 3L_11895462_SNP [dm6]	C	T	3.323e^-4	1	INTRON CG44837
3L	11888567	3L_11888567_SNP [dm3] 3L_11895467_SNP [dm6]	A	C	3.323e^-4	1	INTRON CG44837
3L	20521631	3L_20521631_SNP [dm3] 3L_20528531_SNP [dm6]	T	C	3.323e^-4	1	NON_SYNONYMOUS_CODING Rcd2 DOWNSTREAM CG4858
3R	22229198	3R_22229198_SNP [dm3] 3R_26403476_SNP [dm6]	A	T	3.323e^-4	1	INTRON ppk15
2L	5091969	2L_5091969_SNP [dm3] 2L_5091969_SNP [dm6]	T	C	3.340e^-4	1	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
2R	10715671	2R_10715671_SNP [dm3] 2R_14828166_SNP [dm6]	C	G	3.341e^-4	1	INTERGENIC
2R	10715684	2R_10715684_SNP [dm3] 2R_14828179_SNP [dm6]	A	G	3.341e^-4	1	INTERGENIC
3L	8523077	3L_8523077_SNP [dm3] 3L_8529977_SNP [dm6]	T	C	3.344e^-4	1	INTRON foi
2R	16639803	2R_16639803_SNP [dm3] 2R_20752298_SNP [dm6]	G	C	3.364e^-4	1	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2R	12538848	2R_12538848_SNP [dm3] 2R_16651343_SNP [dm6]	C	T	3.369e^-4	1	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
3R	22572109	3R_22572109_DEL [dm3] 3R_26746387_DEL [dm6]	GCGAAAACAAGGCAAAATG...	G	3.372e^-4	1	INTERGENIC
3R	22574026	3R_22574026_SNP [dm3] 3R_26748304_SNP [dm6]	G	C	3.372e^-4	1	INTERGENIC
3R	22574740	3R_22574740_SNP [dm3] 3R_26749018_SNP [dm6]	G	C	3.372e^-4	1	INTERGENIC
3R	22574826	3R_22574826_SNP [dm3] 3R_26749104_SNP [dm6]	C	T	3.372e^-4	1	INTERGENIC
3R	22576367	3R_22576367_SNP [dm3] 3R_26750645_SNP [dm6]	C	A	3.372e^-4	1	INTERGENIC
3R	22576911	3R_22576911_SNP [dm3] 3R_26751189_SNP [dm6]	T	C	3.372e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7440745	3L_7440745_SNP [dm3] 3L_7447645_SNP [dm6]	T	A	3.377e^-4	1	INTRON CG42458	TF binding site mE1_TFBS_HSA
X	5721614	X_5721614_SNP [dm3] X_5827581_SNP [dm6]	C	T	3.380e^-4	1	INTRON CG15765
2L	7237113	2L_7237113_SNP [dm3] 2L_7237113_SNP [dm6]	T	C	3.396e^-4	1	INTRON Ndae1
2R	10646842	2R_10646842_SNP [dm3] 2R_14759337_SNP [dm6]	G	C	3.423e^-4	1	NON_SYNONYMOUS_CODING CG12857 DOWNSTREAM Spred	TF binding site mE1_TFBS_cad
2R	8334833	2R_8334833_SNP [dm3] 2R_12447328_SNP [dm6]	G	C	3.445e^-4	1	INTRON Dyb
2R	5285409	2R_5285409_SNP [dm3] 2R_9397904_SNP [dm6]	G	A	3.453e^-4	1	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17795566	3L_17795566_SNP [dm3] 3L_17802466_SNP [dm6]	T	G	3.465e^-4	1	UPSTREAM NUCB1 DOWNSTREAM CG5589 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9176316	2R_9176316_SNP [dm3] 2R_13288811_SNP [dm6]	C	A	3.473e^-4	1	INTRON Dh31-R
3R	22229221	3R_22229221_SNP [dm3] 3R_26403499_SNP [dm6]	G	T	3.480e^-4	1	INTRON ppk15
2R	5077030	2R_5077030_SNP [dm3] 2R_9189525_SNP [dm6]	C	T	3.484e^-4	1	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_sens
3L	5183621	3L_5183621_SNP [dm3] 3L_5190521_SNP [dm6]	T	C	3.493e^-4	1	INTRON shep
2R	6746358	2R_6746358_SNP [dm3] 2R_10858853_SNP [dm6]	T	G	3.494e^-4	1	UPSTREAM CR44302 INTRON CG30015
3R	14729936	3R_14729936_SNP [dm3] 3R_18904214_SNP [dm6]	T	G	3.499e^-4	1	DOWNSTREAM CG14292 INTERGENIC
2R	15270111	2R_15270111_SNP [dm3] 2R_19382606_SNP [dm6]	T	C	3.511e^-4	1	INTRON CG10073
3L	11208298	3L_11208298_SNP [dm3] 3L_11215198_SNP [dm6]	C	A	3.526e^-4	1	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2L	3094100	2L_3094100_SNP [dm3] 2L_3094100_SNP [dm6]	C	A	3.556e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_sna
3L	1610157	3L_1610157_SNP [dm3] 3L_1610157_SNP [dm6]	C	A	3.559e^-4	1	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2L	13879843	2L_13879843_SNP [dm3] 2L_13879843_SNP [dm6]	A	G	3.563e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5183736	3L_5183736_SNP [dm3] 3L_5190636_SNP [dm6]	G	A	3.565e^-4	1	INTRON shep
X	5607074	X_5607074_SNP [dm3] X_5713041_SNP [dm6]	G	A	3.592e^-4	1	INTRON CG33080
3L	13080180	3L_13080180_SNP [dm3] 3L_13087080_SNP [dm6]	A	T	3.606e^-4	1	SPLICE_SITE_REGION CG17300 UPSTREAM CR45749 INTRON CG17300
3L	17943313	3L_17943313_SNP [dm3] 3L_17950213_SNP [dm6]	T	G	3.611e^-4	1	DOWNSTREAM Eip75B INTERGENIC
3R	17814861	3R_17814861_SNP [dm3] 3R_21989139_SNP [dm6]	T	A	3.635e^-4	1	INTRON Eip93F
3L	8683345	3L_8683345_SNP [dm3] 3L_8690245_SNP [dm6]	C	G	3.636e^-4	1	INTERGENIC
3L	8683389	3L_8683389_SNP [dm3] 3L_8690289_SNP [dm6]	A	T	3.636e^-4	1	INTERGENIC
2R	16848301	2R_16848301_SNP [dm3] 2R_20960796_SNP [dm6]	G	A	3.656e^-4	1	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	4303042	2R_4303042_SNP [dm3] 2R_8415537_SNP [dm6]	A	C	3.668e^-4	1	INTERGENIC
3L	12282492	3L_12282492_SNP [dm3] 3L_12289392_SNP [dm6]	C	G	3.678e^-4	1	EXON CR45658
3L	12282496	3L_12282496_SNP [dm3] 3L_12289396_SNP [dm6]	C	T	3.678e^-4	1	EXON CR45658
X	16056095	X_16056095_SNP [dm3] X_16162062_SNP [dm6]	T	C	3.679e^-4	1	INTERGENIC
3R	13789136	3R_13789136_SNP [dm3] 3R_17963414_SNP [dm6]	G	A	3.681e^-4	1	INTRON cpo
2R	17080461	2R_17080461_SNP [dm3] 2R_21192956_SNP [dm6]	G	A	3.688e^-4	1	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18276046	X_18276046_SNP [dm3] X_18382013_SNP [dm6]	C	T	3.698e^-4	1	DOWNSTREAM CG6179 INTRON betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6532517	3R_6532517_SNP [dm3] 3R_10706795_SNP [dm6]	A	G	3.712e^-4	1	UTR_5_PRIME CG31467 UPSTREAM CG14684 DOWNSTREAM CG31278	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	17676366	3R_17676366_SNP [dm3] 3R_21850644_SNP [dm6]	G	T	3.723e^-4	1	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	2708596	3L_2708596_SNP [dm3] 3L_2708596_SNP [dm6]	G	A	3.737e^-4	1	INTRON Fife
3L	2709198	3L_2709198_SNP [dm3] 3L_2709198_SNP [dm6]	G	A	3.737e^-4	1	INTRON Fife
3R	21945016	3R_21945016_SNP [dm3] 3R_26119294_SNP [dm6]	G	C	3.737e^-4	1	INTRON CG31324
3L	4363532	3L_4363532_SNP [dm3] 3L_4363532_SNP [dm6]	G	A	3.746e^-4	1	INTRON Cip4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	904740	2L_904740_SNP [dm3] 2L_904740_SNP [dm6]	T	G	3.750e^-4	1	DOWNSTREAM CR45261 INTERGENIC
3L	11269397	3L_11269397_SNP [dm3] 3L_11276297_SNP [dm6]	G	A	3.752e^-4	1	INTERGENIC
3L	1866595	3L_1866595_SNP [dm3] 3L_1866595_SNP [dm6]	C	A	3.756e^-4	1	INTRON CG12025	TF binding site mE1_TFBS_cad
2R	5077041	2R_5077041_SNP [dm3] 2R_9189536_SNP [dm6]	A	C	3.773e^-4	1	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_sens
3L	8683340	3L_8683340_SNP [dm3] 3L_8690240_SNP [dm6]	T	C	3.775e^-4	1	INTERGENIC
3R	26640585	3R_26640585_SNP [dm3] 3R_30814863_SNP [dm6]	T	C	3.784e^-4	1	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2281996	X_2281996_SNP [dm3] X_2387963_SNP [dm6]	T	G	3.787e^-4	1	UPSTREAM PsGEF INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7057710	3L_7057710_SNP [dm3] 3L_7064610_SNP [dm6]	T	G	3.824e^-4	1	INTRON CG8641
2R	18406423	2R_18406423_SNP [dm3] 2R_22518918_SNP [dm6]	G	A	3.829e^-4	1	INTRON px
2L	15185326	2L_15185326_SNP [dm3] 2L_15185326_SNP [dm6]	C	T	3.829e^-4	1	INTRON CG4168
X	8066056	X_8066056_SNP [dm3] X_8172023_SNP [dm6]	G	C	3.831e^-4	1	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_chinmo
3L	2710021	3L_2710021_SNP [dm3] 3L_2710021_SNP [dm6]	G	A	3.833e^-4	1	INTRON Fife
X	13302891	X_13302891_SNP [dm3] X_13408858_SNP [dm6]	C	T	3.833e^-4	1	DOWNSTREAM CG1998 INTRON GstT4
X	15743479	X_15743479_SNP [dm3] X_15849446_SNP [dm6]	C	T	3.836e^-4	1	UPSTREAM sun DOWNSTREAM UBL3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17680726	3R_17680726_SNP [dm3] 3R_21855004_SNP [dm6]	C	G	3.844e^-4	1	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	3268811	2L_3268811_SNP [dm3] 2L_3268811_SNP [dm6]	C	G	3.846e^-4	1	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
2L	3269169	2L_3269169_SNP [dm3] 2L_3269169_SNP [dm6]	T	A	3.846e^-4	1	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
2L	3269379	2L_3269379_SNP [dm3] 2L_3269379_SNP [dm6]	C	A	3.846e^-4	1	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
3R	17841313	3R_17841313_SNP [dm3] 3R_22015591_SNP [dm6]	T	C	3.846e^-4	1	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	6245914	3R_6245914_SNP [dm3] 3R_10420192_SNP [dm6]	A	G	3.851e^-4	1	INTERGENIC
3R	10514630	3R_10514630_SNP [dm3] 3R_14688908_SNP [dm6]	T	A	3.855e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7572770	2R_7572770_SNP [dm3] 2R_11685265_SNP [dm6]	C	G	3.857e^-4	1	NON_SYNONYMOUS_CODING CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11435348	3R_11435348_SNP [dm3] 3R_15609626_SNP [dm6]	A	G	3.857e^-4	1	INTERGENIC
X	4472906	X_4472906_SNP [dm3] X_4578873_SNP [dm6]	T	A	3.870e^-4	1	INTRON CR32773
2R	14089757	2R_14089757_SNP [dm3] 2R_18202252_SNP [dm6]	C	T	3.871e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3673635	3L_3673635_SNP [dm3] 3L_3673635_SNP [dm6]	A	G	3.873e^-4	1	INTERGENIC
X	13577072	X_13577072_SNP [dm3] X_13683039_SNP [dm6]	T	C	3.882e^-4	1	SYNONYMOUS_CODING CG11158
3L	11715678	3L_11715678_SNP [dm3] 3L_11722578_SNP [dm6]	T	C	3.895e^-4	1	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17682283	2L_17682283_SNP [dm3] 2L_17682283_SNP [dm6]	T	G	3.902e^-4	1	INTRON CadN
3L	4681366	3L_4681366_SNP [dm3] 3L_4681366_SNP [dm6]	G	C	3.903e^-4	1	UTR_5_PRIME axo INTRON axo
2L	8007249	2L_8007249_SNP [dm3] 2L_8007249_SNP [dm6]	G	T	3.908e^-4	1	UPSTREAM Spn28Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12590421	3L_12590421_SNP [dm3] 3L_12597321_SNP [dm6]	G	C	3.908e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	13014970	2R_13014970_SNP [dm3] 2R_17127465_SNP [dm6]	T	C	3.933e^-4	1	UPSTREAM CG15605 INTERGENIC
3L	3866326	3L_3866326_SNP [dm3] 3L_3866326_SNP [dm6]	A	C	3.933e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17212234	X_17212234_SNP [dm3] X_17318201_SNP [dm6]	T	C	3.943e^-4	1	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21244598	3R_21244598_SNP [dm3] 3R_25418876_SNP [dm6]	G	T	3.958e^-4	1	INTRON Fur1
2R	4315363	2R_4315363_SNP [dm3] 2R_8427858_SNP [dm6]	A	T	3.982e^-4	1	INTRON CSN7
3L	17923148	3L_17923148_INS [dm3] 3L_17930048_INS [dm6]	T	TAGGGTAGT	3.985e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14136737	2R_14136737_SNP [dm3] 2R_18249232_SNP [dm6]	C	A	3.987e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	10809687	2L_10809687_SNP [dm3] 2L_10809687_SNP [dm6]	A	G	3.992e^-4	1	INTRON Nos
2L	1821224	2L_1821224_SNP [dm3] 2L_1821224_SNP [dm6]	A	T	3.993e^-4	1	DOWNSTREAM CG31933 INTERGENIC
X	2054912	X_2054912_SNP [dm3] X_2160879_SNP [dm6]	T	C	4.000e^-4	1	SYNONYMOUS_CODING Cyp4d1 INTRON Cyp4d1	TF binding site mE1_TFBS_chinmo
2R	6752379	2R_6752379_SNP [dm3] 2R_10864874_SNP [dm6]	A	C	4.040e^-4	1	INTRON CG30015
3L	18184257	3L_18184257_SNP [dm3] 3L_18191157_SNP [dm6]	G	A	4.076e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17736188	2R_17736188_SNP [dm3] 2R_21848683_SNP [dm6]	C	T	4.077e^-4	1	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	17736198	2R_17736198_SNP [dm3] 2R_21848693_SNP [dm6]	A	G	4.077e^-4	1	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	16862426	3R_16862426_SNP [dm3] 3R_21036704_SNP [dm6]	C	T	4.078e^-4	1	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2R	12487292	2R_12487292_SNP [dm3] 2R_16599787_SNP [dm6]	T	C	4.086e^-4	1	SYNONYMOUS_CODING CG5089 INTRON CG8303
3R	13785405	3R_13785405_SNP [dm3] 3R_17959683_SNP [dm6]	C	T	4.091e^-4	1	INTRON cpo
3L	17795610	3L_17795610_SNP [dm3] 3L_17802510_SNP [dm6]	T	A	4.094e^-4	1	UTR_3_PRIME CG5589 UPSTREAM NUCB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16992225	3R_16992225_SNP [dm3] 3R_21166503_SNP [dm6]	A	G	4.102e^-4	1	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2R	8269599	2R_8269599_SNP [dm3] 2R_12382094_SNP [dm6]	C	T	4.112e^-4	1	UPSTREAM CG8501 INTERGENIC
2L	12151318	2L_12151318_SNP [dm3] 2L_12151318_SNP [dm6]	G	C	4.113e^-4	1	INTRON CG31760
3L	5916493	3L_5916493_SNP [dm3] 3L_5923393_SNP [dm6]	A	G	4.113e^-4	1	SYNONYMOUS_CODING CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
3L	3107174	3L_3107174_SNP [dm3] 3L_3107174_SNP [dm6]	T	A	4.119e^-4	1	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3107180	3L_3107180_SNP [dm3] 3L_3107180_SNP [dm6]	T	A	4.119e^-4	1	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3269118	2L_3269118_DEL [dm3] 2L_3269118_DEL [dm6]	TAAAAACAGCAT...	T	4.138e^-4	1	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
2R	13014640	2R_13014640_SNP [dm3] 2R_17127135_SNP [dm6]	T	A	4.140e^-4	1	UPSTREAM CG15605 DOWNSTREAM Amy-d INTERGENIC
3L	1581265	3L_1581265_SNP [dm3] 3L_1581265_SNP [dm6]	C	G	4.152e^-4	1	INTRON CG13917
X	13351657	X_13351657_SNP [dm3] X_13457624_SNP [dm6]	A	G	4.158e^-4	1	UTR_5_PRIME CG34324 INTRON Neto
X	6513978	X_6513978_SNP [dm3] X_6619945_SNP [dm6]	T	C	4.167e^-4	1	INTRON pigs
X	6514049	X_6514049_SNP [dm3] X_6620016_SNP [dm6]	C	A	4.167e^-4	1	INTRON pigs
3L	12035409	3L_12035409_SNP [dm3] 3L_12042309_SNP [dm6]	C	A	4.173e^-4	1	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	2314664	3L_2314664_SNP [dm3] 3L_2314664_SNP [dm6]	T	C	4.176e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10749752	3R_10749752_SNP [dm3] 3R_14924030_SNP [dm6]	T	C	4.187e^-4	1	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	4.195e^-4	1	UPSTREAM CG12003 INTRON CG7879
2R	19189713	2R_19189713_SNP [dm3] 2R_23302190_SNP [dm6]	C	T	4.222e^-4	1	INTERGENIC
2R	14796823	2R_14796823_SNP [dm3] 2R_18909318_SNP [dm6]	T	C	4.230e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano
2L	17290928	2L_17290928_SNP [dm3] 2L_17290928_SNP [dm6]	G	A	4.249e^-4	1	DOWNSTREAM CG6380 INTERGENIC
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	4.251e^-4	1	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11185452	3L_11185452_SNP [dm3] 3L_11192352_SNP [dm6]	A	C	4.259e^-4	1	INTRON GlcAT-P
2R	5854573	2R_5854573_SNP [dm3] 2R_9967068_SNP [dm6]	G	C	4.265e^-4	1	UPSTREAM CG12133 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5854827	2R_5854827_SNP [dm3] 2R_9967322_SNP [dm6]	A	G	4.265e^-4	1	NON_SYNONYMOUS_CODING CG12133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19675997	2R_19675997_SNP [dm3] 2R_23788474_SNP [dm6]	A	T	4.289e^-4	1	INTRON CG9850
3L	8588088	3L_8588088_SNP [dm3] 3L_8594988_SNP [dm6]	T	C	4.299e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	5076966	2R_5076966_SNP [dm3] 2R_9189461_SNP [dm6]	A	G	4.301e^-4	1	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9132306	2L_9132306_SNP [dm3] 2L_9132306_SNP [dm6]	A	T	4.322e^-4	1	INTRON CG32982
X	12815185	X_12815185_SNP [dm3] X_12921152_SNP [dm6]	A	G	4.326e^-4	1	INTRON fne
2R	10332521	2R_10332521_SNP [dm3] 2R_14445016_SNP [dm6]	A	C	4.327e^-4	1	INTRON Oaz
3L	3886195	3L_3886195_SNP [dm3] 3L_3886195_SNP [dm6]	A	G	4.330e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10525420	3R_10525420_SNP [dm3] 3R_14699698_SNP [dm6]	C	T	4.345e^-4	1	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad
2R	969007	2R_969007_SNP [dm3] 2R_5081502_SNP [dm6]	C	G	4.348e^-4	1	DOWNSTREAM CR43360 INTERGENIC	transposable element FlyBase
X	20236603	X_20236603_SNP [dm3] X_20365576_SNP [dm6]	T	C	4.353e^-4	1	INTERGENIC
3L	4349372	3L_4349372_SNP [dm3] 3L_4349372_SNP [dm6]	C	T	4.354e^-4	1	INTRON Cip4
3L	6477832	3L_6477832_SNP [dm3] 3L_6484732_SNP [dm6]	C	A	4.361e^-4	1	SYNONYMOUS_CODING CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2895304	2R_2895304_SNP [dm3] 2R_7007799_SNP [dm6]	G	A	4.362e^-4	1	NON_SYNONYMOUS_CODING Tsp42Ec	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17112971	2L_17112971_SNP [dm3] 2L_17112971_SNP [dm6]	G	A	4.368e^-4	1	INTERGENIC
2R	16848287	2R_16848287_SNP [dm3] 2R_20960782_SNP [dm6]	G	A	4.385e^-4	1	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	3871261	2L_3871261_SNP [dm3] 2L_3871261_SNP [dm6]	T	G	4.389e^-4	1	UTR_3_PRIME Cep97 DOWNSTREAM CG31957	TF binding site mE1_TFBS_sens
3R	26602045	3R_26602045_SNP [dm3] 3R_30776323_SNP [dm6]	G	A	4.408e^-4	1	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3L	12282432	3L_12282432_SNP [dm3] 3L_12289332_SNP [dm6]	G	A	4.414e^-4	1	EXON CR45658
2R	14428014	2R_14428014_SNP [dm3] 2R_18540509_SNP [dm6]	G	C	4.416e^-4	1	INTRON Rgk2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20106625	3R_20106625_DEL [dm3] 3R_24280903_DEL [dm6]	ACGG	T	4.425e^-4	1		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22570843	3R_22570843_SNP [dm3] 3R_26745121_SNP [dm6]	A	G	4.426e^-4	1	INTERGENIC
2R	19189704	2R_19189704_SNP [dm3] 2R_23302181_SNP [dm6]	A	G	4.434e^-4	1	INTERGENIC
3L	1831668	3L_1831668_INS [dm3] 3L_1831668_INS [dm6]	C	CC	4.435e^-4	1	SPLICE_SITE_REGION Cpr62Ba UTR_5_PRIME Cpr62Ba DOWNSTREAM Cpr62Bb
2L	7864285	2L_7864285_DEL [dm3] 2L_7864285_DEL [dm6]	GAATGGCGTATGGCGGA...	G	4.446e^-4	1	DOWNSTREAM Proc INTERGENIC
2R	3507633	2R_3507633_SNP [dm3] 2R_7620128_SNP [dm6]	T	C	4.446e^-4	1	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3L	1075171	3L_1075171_SNP [dm3] 3L_1075171_SNP [dm6]	G	T	4.446e^-4	1	INTRON bab1
3L	8588061	3L_8588061_SNP [dm3] 3L_8594961_SNP [dm6]	G	A	4.450e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5805973	2L_5805973_SNP [dm3] 2L_5805973_SNP [dm6]	A	G	4.458e^-4	1	INTRON CG11034	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7285784	2L_7285784_SNP [dm3] 2L_7285784_SNP [dm6]	C	A	4.461e^-4	1	INTERGENIC
2L	7285785	2L_7285785_SNP [dm3] 2L_7285785_SNP [dm6]	A	C	4.461e^-4	1	INTERGENIC
2L	9400414	2L_9400414_SNP [dm3] 2L_9400414_SNP [dm6]	C	G	4.469e^-4	1	INTRON Shawl
2L	864765	2L_864765_SNP [dm3] 2L_864765_SNP [dm6]	A	G	4.475e^-4	1	NON_SYNONYMOUS_CODING aru UTR_5_PRIME aru DOWNSTREAM snoRNA:Me28S-U1230	TF binding site mE1_TFBS_cad
2L	864852	2L_864852_SNP [dm3] 2L_864852_SNP [dm6]	T	A	4.475e^-4	1	DOWNSTREAM snoRNA:Me28S-U1230 INTRON aru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5916620	3L_5916620_SNP [dm3] 3L_5923520_SNP [dm6]	A	T	4.479e^-4	1	UTR_3_PRIME CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
3L	22115973	3L_22115973_SNP [dm3] 3L_22122873_SNP [dm6]	A	G	4.479e^-4	1	DOWNSTREAM CR45236 EXON CR45235
3L	22027700	3L_22027700_SNP [dm3] 3L_22034600_SNP [dm6]	C	T	4.480e^-4	1	UPSTREAM Oct-TyrR INTERGENIC
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	4.481e^-4	1	EXON CR45658
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	4.481e^-4	1	EXON CR45658
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	4.481e^-4	1	EXON CR45658
3R	17786077	3R_17786077_SNP [dm3] 3R_21960355_SNP [dm6]	A	T	4.483e^-4	1	INTRON Eip93F
2L	14191803	2L_14191803_SNP [dm3] 2L_14191803_SNP [dm6]	G	A	4.489e^-4	1	INTRON Dyrk2
3R	17713591	3R_17713591_SNP [dm3] 3R_21887869_SNP [dm6]	T	G	4.510e^-4	1	UPSTREAM dnd INTRON CG6678
2L	8075219	2L_8075219_DEL [dm3] 2L_8075219_DEL [dm6]	ATA	A	4.513e^-4	1	INTRON Mcr
X	15810734	X_15810734_SNP [dm3] X_15916701_SNP [dm6]	C	G	4.515e^-4	1	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
X	15810745	X_15810745_SNP [dm3] X_15916712_SNP [dm6]	T	C	4.515e^-4	1	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	4.525e^-4	1	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	4.525e^-4	1	DOWNSTREAM Mks1 INTERGENIC
2L	10844907	2L_10844907_SNP [dm3] 2L_10844907_SNP [dm6]	G	C	4.534e^-4	1	SYNONYMOUS_CODING CG17139 START_GAINED CG17140 UTR_5_PRIME CG17140 UPSTREAM CG17140 DOWNSTREAM Porin2
3L	4211235	3L_4211235_SNP [dm3] 3L_4211235_SNP [dm6]	C	G	4.561e^-4	1	SYNONYMOUS_CODING Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17956058	2R_17956058_SNP [dm3] 2R_22068553_SNP [dm6]	G	A	4.570e^-4	1	SYNONYMOUS_CODING Snp UTR_5_PRIME Snp DOWNSTREAM CG44249
3R	13785618	3R_13785618_SNP [dm3] 3R_17959896_SNP [dm6]	A	G	4.577e^-4	1	INTRON cpo
3L	12969330	3L_12969330_SNP [dm3] 3L_12976230_SNP [dm6]	G	A	4.600e^-4	1	INTERGENIC
3L	12969331	3L_12969331_SNP [dm3] 3L_12976231_SNP [dm6]	T	C	4.600e^-4	1	INTERGENIC
3L	12969340	3L_12969340_SNP [dm3] 3L_12976240_SNP [dm6]	T	A	4.600e^-4	1	INTERGENIC
3L	12969385	3L_12969385_SNP [dm3] 3L_12976285_SNP [dm6]	A	T	4.600e^-4	1	INTERGENIC
3L	12969387	3L_12969387_SNP [dm3] 3L_12976287_SNP [dm6]	C	T	4.600e^-4	1	INTERGENIC
3L	12969388	3L_12969388_INS [dm3] 3L_12976288_INS [dm6]	A	ATTCG	4.600e^-4	1	INTERGENIC
2L	5432700	2L_5432700_SNP [dm3] 2L_5432700_SNP [dm6]	G	A	4.619e^-4	1	UPSTREAM CR43714 DOWNSTREAM CR43713 & 1 other INTERGENIC
2R	10257922	2R_10257922_SNP [dm3] 2R_14370417_SNP [dm6]	A	G	4.619e^-4	1	NON_SYNONYMOUS_CODING Obp50a UPSTREAM Obp50b & 1 other DOWNSTREAM CG34444
2R	13014704	2R_13014704_SNP [dm3] 2R_17127199_SNP [dm6]	A	T	4.620e^-4	1	UPSTREAM CG15605 DOWNSTREAM Amy-d INTERGENIC
2L	13114460	2L_13114460_SNP [dm3] 2L_13114460_SNP [dm6]	A	G	4.629e^-4	1	INTERGENIC
X	2634805	X_2634805_SNP [dm3] X_2740772_SNP [dm6]	C	A	4.632e^-4	1	UPSTREAM kirre INTRON Syx4 & 1 other
3L	8541519	3L_8541519_SNP [dm3] 3L_8548419_SNP [dm6]	T	A	4.633e^-4	1	INTRON rhea	TF binding site mE1_TFBS_inv
2L	6362610	2L_6362610_SNP [dm3] 2L_6362610_SNP [dm6]	C	T	4.643e^-4	1	INTERGENIC
X	18273917	X_18273917_SNP [dm3] X_18379884_SNP [dm6]	A	T	4.678e^-4	1	UPSTREAM CG6179 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	11444402	3R_11444402_SNP [dm3] 3R_15618680_SNP [dm6]	T	G	4.686e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14319220	3L_14319220_SNP [dm3] 3L_14326120_SNP [dm6]	A	C	4.688e^-4	1	INTRON fz EXON CR45025
2L	3269801	2L_3269801_SNP [dm3] 2L_3269801_SNP [dm6]	T	C	4.691e^-4	1	UTR_5_PRIME CG3347
3L	17921865	3L_17921865_SNP [dm3] 3L_17928765_SNP [dm6]	A	C	4.698e^-4	1	INTERGENIC
3L	3685282	3L_3685282_SNP [dm3] 3L_3685282_SNP [dm6]	A	T	4.704e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14504935	3L_14504935_SNP [dm3] 3L_14511835_SNP [dm6]	T	A	4.708e^-4	1	NON_SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27235242	3R_27235242_SNP [dm3] 3R_31409520_SNP [dm6]	G	C	4.716e^-4	1	INTRON Gprk2
3R	20924295	3R_20924295_SNP [dm3] 3R_25098573_SNP [dm6]	A	G	4.722e^-4	1	SYNONYMOUS_CODING CG33096 UTR_5_PRIME CG33095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	26993989	3R_26993989_SNP [dm3] 3R_31168267_SNP [dm6]	T	C	4.728e^-4	1	SYNONYMOUS_CODING stops UTR_5_PRIME stops INTRON Gycbeta100B	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14077484	2L_14077484_SNP [dm3] 2L_14077484_SNP [dm6]	C	A	4.748e^-4	1	INTRON nAChRalpha5
3L	12545671	3L_12545671_DEL [dm3] 3L_12552571_DEL [dm6]	CAG	C	4.765e^-4	1	INTRON sowah
3L	8638061	3L_8638061_SNP [dm3] 3L_8644961_SNP [dm6]	A	T	4.766e^-4	1	UTR_3_PRIME CG13305	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8683717	3L_8683717_SNP [dm3] 3L_8690617_SNP [dm6]	T	C	4.771e^-4	1	INTERGENIC
X	21899153	X_21899153_SNP [dm3] X_22497317_SNP [dm6]	G	A	4.774e^-4	1	SYNONYMOUS_CODING l_1_G0196
3L	7895002	3L_7895002_SNP [dm3] 3L_7901902_SNP [dm6]	A	G	4.778e^-4	1	INTRON pbl
X	19645956	X_19645956_SNP [dm3] X_19751923_SNP [dm6]	A	G	4.780e^-4	1	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5752356	3R_5752356_SNP [dm3] 3R_9926634_SNP [dm6]	G	T	4.787e^-4	1	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13789160	3R_13789160_SNP [dm3] 3R_17963438_SNP [dm6]	G	A	4.788e^-4	1	INTRON cpo
2L	3157121	2L_3157121_SNP [dm3] 2L_3157121_SNP [dm6]	G	T	4.789e^-4	1	INTRON Mad
2L	864899	2L_864899_SNP [dm3] 2L_864899_SNP [dm6]	G	C	4.795e^-4	1	NON_SYNONYMOUS_CODING aru DOWNSTREAM snoRNA:Me28S-U1230 INTRON aru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14571158	X_14571158_DEL [dm3] X_14677125_DEL [dm6]	CCGCATC	C	4.798e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18025408	2L_18025408_SNP [dm3] 2L_18025408_SNP [dm6]	A	T	4.798e^-4	1	INTRON rdo
3R	26396066	3R_26396066_SNP [dm3] 3R_30570344_SNP [dm6]	A	T	4.811e^-4	1	UPSTREAM tmod INTRON tmod	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14927230	2L_14927230_SNP [dm3] 2L_14927230_SNP [dm6]	C	T	4.812e^-4	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	5861074	3L_5861074_SNP [dm3] 3L_5867974_SNP [dm6]	C	T	4.814e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5861417	3L_5861417_SNP [dm3] 3L_5868317_SNP [dm6]	T	G	4.814e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18958193	3L_18958193_SNP [dm3] 3L_18965093_SNP [dm6]	T	C	4.828e^-4	1	INTERGENIC
X	4998792	X_4998792_INS [dm3] X_5104759_INS [dm6]	AT	CAGGG	4.830e^-4	1	INTRON rg & 1 other
3R	13965328	3R_13965328_SNP [dm3] 3R_18139606_SNP [dm6]	G	A	4.836e^-4	1	INTERGENIC
3L	5184073	3L_5184073_SNP [dm3] 3L_5190973_SNP [dm6]	C	T	4.873e^-4	1	INTRON shep
2L	5099474	2L_5099474_SNP [dm3] 2L_5099474_SNP [dm6]	T	A	4.878e^-4	1	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	8541983	3L_8541983_DEL [dm3] 3L_8548883_DEL [dm6]	TG	T	4.892e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3R	25316875	3R_25316875_SNP [dm3] 3R_29491153_SNP [dm6]	A	G	4.895e^-4	1	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22558060	3R_22558060_SNP [dm3] 3R_26732338_SNP [dm6]	G	T	4.897e^-4	1	INTERGENIC
3R	5432218	3R_5432218_SNP [dm3] 3R_9606496_SNP [dm6]	T	C	4.898e^-4	1	INTRON CG8312
3L	12969393	3L_12969393_SNP [dm3] 3L_12976293_SNP [dm6]	T	C	4.900e^-4	1	INTERGENIC
3L	12969394	3L_12969394_SNP [dm3] 3L_12976294_SNP [dm6]	T	A	4.900e^-4	1	INTERGENIC
2R	6187439	2R_6187439_SNP [dm3] 2R_10299934_SNP [dm6]	G	A	4.903e^-4	1	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3805190	3L_3805190_SNP [dm3] 3L_3805190_SNP [dm6]	C	A	4.916e^-4	1	INTRON CG32264 & 1 other
3L	3805192	3L_3805192_SNP [dm3] 3L_3805192_SNP [dm6]	A	T	4.916e^-4	1	INTRON CG32264 & 1 other
3L	3805194	3L_3805194_DEL [dm3] 3L_3805194_DEL [dm6]	GTTA	G	4.916e^-4	1	INTRON CG32264 & 1 other
3L	3805203	3L_3805203_SNP [dm3] 3L_3805203_SNP [dm6]	G	A	4.916e^-4	1	INTRON CG32264 & 1 other
2L	16078609	2L_16078609_SNP [dm3] 2L_16078609_SNP [dm6]	G	A	4.978e^-4	1	INTRON beat-Ia
2R	9314780	2R_9314780_SNP [dm3] 2R_13427275_SNP [dm6]	G	A	4.987e^-4	1	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	1317798	X_1317798_SNP [dm3] X_1423765_SNP [dm6]	T	C	4.990e^-4	1	INTRON futsch	TF binding site mE1_TFBS_cad
3L	12560168	3L_12560168_SNP [dm3] 3L_12567068_SNP [dm6]	A	T	4.992e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560179	3L_12560179_SNP [dm3] 3L_12567079_SNP [dm6]	T	A	4.992e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560184	3L_12560184_SNP [dm3] 3L_12567084_SNP [dm6]	G	A	4.992e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12735629	2R_12735629_SNP [dm3] 2R_16848124_SNP [dm6]	C	T	4.994e^-4	1	UPSTREAM CR44467 INTERGENIC
2L	16501655	2L_16501655_SNP [dm3] 2L_16501655_SNP [dm6]	G	T	4.994e^-4	1	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_Trl
3R	14458157	3R_14458157_SNP [dm3] 3R_18632435_SNP [dm6]	C	T	5.005e^-4	1	INTRON qin & 1 other
X	15017373	X_15017373_SNP [dm3] X_15123340_SNP [dm6]	C	T	5.012e^-4	1	INTERGENIC
3L	13083078	3L_13083078_SNP [dm3] 3L_13089978_SNP [dm6]	A	T	5.056e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13083099	3L_13083099_SNP [dm3] 3L_13089999_SNP [dm6]	T	A	5.056e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24518365	3R_24518365_SNP [dm3] 3R_28692643_SNP [dm6]	T	C	5.059e^-4	1	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
2L	20253298	2L_20253298_SNP [dm3] 2L_20253298_SNP [dm6]	T	A	5.059e^-4	1	DOWNSTREAM CR40465 INTERGENIC
2R	15257315	2R_15257315_SNP [dm3] 2R_19369810_SNP [dm6]	A	T	5.068e^-4	1	SYNONYMOUS_CODING CG9416
3R	17666338	3R_17666338_SNP [dm3] 3R_21840616_SNP [dm6]	T	A	5.069e^-4	1	INTERGENIC
3L	19412547	3L_19412547_SNP [dm3] 3L_19419447_SNP [dm6]	C	A	5.071e^-4	1	INTERGENIC
2R	9789105	2R_9789105_SNP [dm3] 2R_13901600_SNP [dm6]	G	A	5.097e^-4	1	INTRON shot	TF binding site mE1_TFBS_cad
2L	13533066	2L_13533066_SNP [dm3] 2L_13533066_SNP [dm6]	G	A	5.108e^-4	1	SYNONYMOUS_CODING CG33645 DOWNSTREAM CG33644 INTRON B4
3R	4193944	3R_4193944_SNP [dm3] 3R_8368222_SNP [dm6]	T	G	5.130e^-4	1	NON_SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9946407	2R_9946407_SNP [dm3] 2R_14058902_SNP [dm6]	A	C	5.139e^-4	1	UTR_3_PRIME mam DOWNSTREAM mam
3R	21944900	3R_21944900_SNP [dm3] 3R_26119178_SNP [dm6]	T	C	5.166e^-4	1	INTRON CG31324
X	8255122	X_8255122_SNP [dm3] X_8361089_SNP [dm6]	T	G	5.176e^-4	1	INTRON nAChRalpha3
3L	13890519	3L_13890519_SNP [dm3] 3L_13897419_SNP [dm6]	A	C	5.177e^-4	1	INTRON dysc
2L	3882312	2L_3882312_DEL [dm3] 2L_3882312_DEL [dm6]	ATA	A	5.185e^-4	1	INTRON capu
3R	9803205	3R_9803205_SNP [dm3] 3R_13977483_SNP [dm6]	A	G	5.189e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11867847	3L_11867847_SNP [dm3] 3L_11874747_SNP [dm6]	C	A	5.198e^-4	1	INTRON CG44837
2R	2412144	2R_2412144_SNP [dm3] 2R_6524639_SNP [dm6]	G	A	5.201e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
2R	1065349	2R_1065349_SNP [dm3] 2R_5177844_SNP [dm6]	A	C	5.209e^-4	1	DOWNSTREAM Nipped-A INTERGENIC
2L	17552615	2L_17552615_INS [dm3] 2L_17552615_INS [dm6]	A	AATTCATCACGAA...	5.213e^-4	1	INTERGENIC
3R	17658539	3R_17658539_SNP [dm3] 3R_21832817_SNP [dm6]	A	C	5.213e^-4	1	NON_SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11220782	2R_11220782_SNP [dm3] 2R_15333277_SNP [dm6]	G	A	5.213e^-4	1	INTRON Hr51
3R	27066669	3R_27066669_DEL [dm3] 3R_31240947_DEL [dm6]	ATATATA	A	5.214e^-4	1	INTRON qless
3L	3693713	3L_3693713_INS [dm3] 3L_3693713_INS [dm6]	C	TT	5.222e^-4	1	DOWNSTREAM CR43485 INTERGENIC
2L	3164583	2L_3164583_SNP [dm3] 2L_3164583_SNP [dm6]	G	A	5.238e^-4	1	INTRON Hydr2
3R	4295000	3R_4295000_SNP [dm3] 3R_8469278_SNP [dm6]	T	A	5.241e^-4	1	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17112948	2L_17112948_SNP [dm3] 2L_17112948_SNP [dm6]	A	G	5.251e^-4	1	INTERGENIC
X	20936100	X_20936100_SNP [dm3] X_21065073_SNP [dm6]	A	C	5.252e^-4	1	UPSTREAM CG32512 INTRON bves & 1 other
3L	10809007	3L_10809007_DEL [dm3] 3L_10815907_DEL [dm6]	AGA	A	5.268e^-4	1	UTR_3_PRIME CG42831 UPSTREAM CR45247
3R	10061715	3R_10061715_SNP [dm3] 3R_14235993_SNP [dm6]	C	T	5.270e^-4	1	DOWNSTREAM CG43291 INTERGENIC
2L	2939195	2L_2939195_SNP [dm3] 2L_2939195_SNP [dm6]	G	A	5.295e^-4	1	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	5.299e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260071	2R_18260071_SNP [dm3] 2R_22372566_SNP [dm6]	T	A	5.299e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260089	2R_18260089_SNP [dm3] 2R_22372584_SNP [dm6]	A	C	5.299e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	5.299e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	4840651	2L_4840651_SNP [dm3] 2L_4840651_SNP [dm6]	T	A	5.323e^-4	1	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2539515	2L_2539515_SNP [dm3] 2L_2539515_SNP [dm6]	C	T	5.324e^-4	1	INTERGENIC
3R	23782888	3R_23782888_SNP [dm3] 3R_27957166_SNP [dm6]	T	C	5.336e^-4	1	SYNONYMOUS_CODING CG5527 DOWNSTREAM CG42487 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13145016	2L_13145016_SNP [dm3] 2L_13145016_SNP [dm6]	T	A	5.340e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	15291850	X_15291850_SNP [dm3] X_15397817_SNP [dm6]	G	C	5.343e^-4	1	INTRON Cngl
2L	14107022	2L_14107022_SNP [dm3] 2L_14107022_SNP [dm6]	G	A	5.345e^-4	1	DOWNSTREAM CG16879 INTRON CG16879
2R	9631977	2R_9631977_SNP [dm3] 2R_13744472_SNP [dm6]	T	C	5.349e^-4	1	INTRON fas
2L	14171571	2L_14171571_SNP [dm3] 2L_14171571_SNP [dm6]	T	C	5.353e^-4	1	INTRON CG43333
2R	5307621	2R_5307621_SNP [dm3] 2R_9420116_SNP [dm6]	T	C	5.353e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16961314	2R_16961314_SNP [dm3] 2R_21073809_SNP [dm6]	A	G	5.359e^-4	1	UPSTREAM Treh INTERGENIC
3L	5861699	3L_5861699_SNP [dm3] 3L_5868599_SNP [dm6]	A	T	5.370e^-4	1	INTERGENIC
X	2281901	X_2281901_SNP [dm3] X_2387868_SNP [dm6]	T	C	5.376e^-4	1	UPSTREAM PsGEF INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10598819	2R_10598819_SNP [dm3] 2R_14711314_SNP [dm6]	A	C	5.385e^-4	1	INTRON mspo
2R	15124374	2R_15124374_SNP [dm3] 2R_19236869_SNP [dm6]	G	T	5.390e^-4	1	INTRON cora
2L	6359668	2L_6359668_SNP [dm3] 2L_6359668_SNP [dm6]	G	A	5.392e^-4	1	UPSTREAM CR44778 INTRON CR44777 EXON CR44777
2L	9122134	2L_9122134_SNP [dm3] 2L_9122134_SNP [dm6]	A	G	5.403e^-4	1	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	17212553	X_17212553_SNP [dm3] X_17318520_SNP [dm6]	T	C	5.428e^-4	1	INTRON B-H2	TF binding site mE1_TFBS_HSA
2R	15270114	2R_15270114_SNP [dm3] 2R_19382609_SNP [dm6]	G	A	5.431e^-4	1	INTRON CG10073
X	19982560	X_19982560_SNP [dm3] X_20088527_SNP [dm6]	A	G	5.446e^-4	1	INTERGENIC
2L	5806351	2L_5806351_SNP [dm3] 2L_5806351_SNP [dm6]	G	A	5.447e^-4	1	INTRON CG11034
2L	5806587	2L_5806587_SNP [dm3] 2L_5806587_SNP [dm6]	C	T	5.447e^-4	1	NON_SYNONYMOUS_CODING CG11034 SYNONYMOUS_CODING CG11034	TF binding site mE1_TFBS_cad
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	5.459e^-4	1	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	5.459e^-4	1	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	5.459e^-4	1	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	5.459e^-4	1	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	5.459e^-4	1	DOWNSTREAM Lsp1alpha INTERGENIC
2L	9744355	2L_9744355_INS [dm3] 2L_9744355_INS [dm6]	A	AAA	5.463e^-4	1	INTRON Nckx30C
2L	9744422	2L_9744422_DEL [dm3] 2L_9744422_DEL [dm6]	TGGCTT	T	5.463e^-4	1	INTRON Nckx30C
2L	5894206	2L_5894206_SNP [dm3] 2L_5894206_SNP [dm6]	C	A	5.464e^-4	1	UPSTREAM Acp26Aa INTERGENIC
2L	5894210	2L_5894210_SNP [dm3] 2L_5894210_SNP [dm6]	C	G	5.464e^-4	1	UPSTREAM Acp26Aa INTERGENIC
3R	15856588	3R_15856588_SNP [dm3] 3R_20030866_SNP [dm6]	G	A	5.474e^-4	1	SYNONYMOUS_CODING trem UPSTREAM CG4936	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9391960	X_9391960_SNP [dm3] X_9497927_SNP [dm6]	A	T	5.474e^-4	1	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9391972	X_9391972_SNP [dm3] X_9497939_SNP [dm6]	G	A	5.474e^-4	1	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	18141789	3L_18141789_SNP [dm3] 3L_18148689_SNP [dm6]	G	A	5.475e^-4	1	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8215956	X_8215956_SNP [dm3] X_8321923_SNP [dm6]	C	A	5.479e^-4	1	INTRON nAChRalpha3
3L	11434359	3L_11434359_DEL [dm3] 3L_11441259_DEL [dm6]	AGGTTTTGCAAA...	A	5.489e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13083989	3L_13083989_SNP [dm3] 3L_13090889_SNP [dm6]	T	A	5.496e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13084013	3L_13084013_SNP [dm3] 3L_13090913_SNP [dm6]	A	G	5.496e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2646016	X_2646016_SNP [dm3] X_2751983_SNP [dm6]	T	A	5.515e^-4	1	UPSTREAM CR43494 INTRON kirre
2R	5070236	2R_5070236_SNP [dm3] 2R_9182731_SNP [dm6]	T	A	5.515e^-4	1	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_HSA
X	2003259	X_2003259_SNP [dm3] X_2109226_SNP [dm6]	T	C	5.523e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4998775	X_4998775_SNP [dm3] X_5104742_SNP [dm6]	T	G	5.528e^-4	1	INTRON rg & 1 other
3R	10520248	3R_10520248_SNP [dm3] 3R_14694526_SNP [dm6]	C	T	5.532e^-4	1	INTRON Meltrin
2R	14348438	2R_14348438_SNP [dm3] 2R_18460933_SNP [dm6]	C	T	5.536e^-4	1	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14238818	2L_14238818_SNP [dm3] 2L_14238818_SNP [dm6]	C	T	5.546e^-4	1	INTERGENIC
2R	6876934	2R_6876934_SNP [dm3] 2R_10989429_SNP [dm6]	A	T	5.551e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	18243744	3L_18243744_DEL [dm3] 3L_18250644_DEL [dm6]	AC	G	5.569e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14796802	2R_14796802_SNP [dm3] 2R_18909297_SNP [dm6]	A	G	5.572e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano
2L	12515103	2L_12515103_SNP [dm3] 2L_12515103_SNP [dm6]	A	T	5.574e^-4	1	INTRON bun
2L	12515119	2L_12515119_SNP [dm3] 2L_12515119_SNP [dm6]	G	C	5.574e^-4	1	INTRON bun
3L	4600885	3L_4600885_SNP [dm3] 3L_4600885_SNP [dm6]	A	G	5.575e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da
2L	4776271	2L_4776271_SNP [dm3] 2L_4776271_SNP [dm6]	A	C	5.588e^-4	1	INTRON CG15630
2R	14565618	2R_14565618_DEL [dm3] 2R_18678113_DEL [dm6]	GC	G	5.594e^-4	1	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	24572706	3R_24572706_SNP [dm3] 3R_28746984_SNP [dm6]	A	T	5.615e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7276035	2L_7276035_SNP [dm3] 2L_7276035_SNP [dm6]	A	T	5.617e^-4	1	UTR_5_PRIME Wnt4	TF binding site BDTNP1_TFBS_da
3L	5709558	3L_5709558_SNP [dm3] 3L_5716458_SNP [dm6]	T	C	5.617e^-4	1	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	3882300	2L_3882300_SNP [dm3] 2L_3882300_SNP [dm6]	A	G	5.622e^-4	1	INTRON capu
2R	5440983	2R_5440983_SNP [dm3] 2R_9553478_SNP [dm6]	A	G	5.627e^-4	1	UPSTREAM mir-14 EXON CR43651	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22558496	3R_22558496_DEL [dm3] 3R_26732774_DEL [dm6]	AAATACCGCAGCAAA...	A	5.641e^-4	1	INTERGENIC
3L	784288	3L_784288_SNP [dm3] 3L_784288_SNP [dm6]	A	G	5.646e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5856773	2R_5856773_SNP [dm3] 2R_9969268_SNP [dm6]	G	C	5.649e^-4	1	DOWNSTREAM CG12133 INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5856775	2R_5856775_SNP [dm3] 2R_9969270_SNP [dm6]	G	T	5.649e^-4	1	DOWNSTREAM CG12133 INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5152597	2L_5152597_SNP [dm3] 2L_5152597_SNP [dm6]	A	G	5.653e^-4	1	INTRON Msp300
2L	13908322	2L_13908322_SNP [dm3] 2L_13908322_SNP [dm6]	T	C	5.653e^-4	1	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10228422	2R_10228422_SNP [dm3] 2R_14340917_SNP [dm6]	T	G	5.657e^-4	1	INTRON Shroom
3R	17831038	3R_17831038_SNP [dm3] 3R_22005316_SNP [dm6]	T	C	5.661e^-4	1	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2136581	2L_2136581_SNP [dm3] 2L_2136581_SNP [dm6]	C	T	5.669e^-4	1	SYNONYMOUS_CODING GlyP DOWNSTREAM tho2	TF binding site mE1_TFBS_cad
3L	10777947	3L_10777947_SNP [dm3] 3L_10784847_SNP [dm6]	C	T	5.674e^-4	1	INTRON CR44544
2L	15182240	2L_15182240_SNP [dm3] 2L_15182240_SNP [dm6]	C	A	5.683e^-4	1	INTRON CG4168	TF binding site mE1_TFBS_cad
2R	18753623	2R_18753623_SNP [dm3] 2R_22866100_SNP [dm6]	A	T	5.686e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1102065	3L_1102065_SNP [dm3] 3L_1102065_SNP [dm6]	T	G	5.691e^-4	1	UPSTREAM bab1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D
3L	398669	3L_398669_SNP [dm3] 3L_398669_SNP [dm6]	C	T	5.694e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	624380	3L_624380_SNP [dm3] 3L_624380_SNP [dm6]	G	A	5.697e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2003229	X_2003229_SNP [dm3] X_2109196_SNP [dm6]	G	A	5.703e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7265880	3L_7265880_SNP [dm3] 3L_7272780_SNP [dm6]	G	A	5.708e^-4	1	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19403638	2R_19403638_SNP [dm3] 2R_23516115_SNP [dm6]	C	G	5.716e^-4	1	INTERGENIC
2L	15060199	2L_15060199_SNP [dm3] 2L_15060199_SNP [dm6]	T	G	5.717e^-4	1	SYNONYMOUS_CODING TfIIS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17245359	3L_17245359_SNP [dm3] 3L_17252259_SNP [dm6]	T	C	5.733e^-4	1	DOWNSTREAM CG6497 INTRON CR43870
3L	12847405	3L_12847405_SNP [dm3] 3L_12854305_SNP [dm6]	T	A	5.738e^-4	1	INTRON Ent3
3L	1752557	3L_1752557_SNP [dm3] 3L_1752557_SNP [dm6]	A	T	5.743e^-4	1	UTR_3_PRIME Cht2 DOWNSTREAM CG13921
X	13995913	X_13995913_SNP [dm3] X_14101880_SNP [dm6]	G	C	5.744e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17370504	3L_17370504_SNP [dm3] 3L_17377404_SNP [dm6]	C	T	5.747e^-4	1	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25315620	3R_25315620_SNP [dm3] 3R_29489898_SNP [dm6]	A	C	5.748e^-4	1	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17456525	2L_17456525_INS [dm3] 2L_17456525_INS [dm6]	G	GGTCCGTTAATG...	5.754e^-4	1	UPSTREAM CG6639 DOWNSTREAM CG18563 INTRON CG5050
X	12899108	X_12899108_SNP [dm3] X_13005075_SNP [dm6]	G	T	5.758e^-4	1	UPSTREAM CG15719 INTRON rad
3L	20522103	3L_20522103_SNP [dm3] 3L_20529003_SNP [dm6]	C	G	5.760e^-4	1	NON_SYNONYMOUS_CODING Rcd2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8588163	3L_8588163_SNP [dm3] 3L_8595063_SNP [dm6]	C	T	5.779e^-4	1	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3R	22558116	3R_22558116_SNP [dm3] 3R_26732394_SNP [dm6]	T	A	5.780e^-4	1	INTERGENIC
X	18274079	X_18274079_SNP [dm3] X_18380046_SNP [dm6]	G	T	5.794e^-4	1	UPSTREAM CG6179 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	1031176	2R_1031176_DEL [dm3] 2R_5143671_DEL [dm6]	TGGC	T	5.811e^-4	1	INTERGENIC	transposable element FlyBase
X	17163500	X_17163500_SNP [dm3] X_17269467_SNP [dm6]	A	C	5.828e^-4	1	INTRON f
3L	11434349	3L_11434349_SNP [dm3] 3L_11441249_SNP [dm6]	T	C	5.856e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13083936	3L_13083936_SNP [dm3] 3L_13090836_SNP [dm6]	T	G	5.859e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083951	3L_13083951_SNP [dm3] 3L_13090851_SNP [dm6]	G	A	5.859e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15812074	2L_15812074_SNP [dm3] 2L_15812074_SNP [dm6]	G	C	5.861e^-4	1	NON_SYNONYMOUS_CODING CG42876
3R	5474860	3R_5474860_SNP [dm3] 3R_9649138_SNP [dm6]	A	T	5.874e^-4	1	NON_SYNONYMOUS_CODING Dh44
2R	7321833	2R_7321833_SNP [dm3] 2R_11434328_SNP [dm6]	A	G	5.879e^-4	1	INTERGENIC
2L	10844781	2L_10844781_SNP [dm3] 2L_10844781_SNP [dm6]	T	A	5.884e^-4	1	UPSTREAM CG17140 INTRON CG17139 & 1 other
2L	8000954	2L_8000954_SNP [dm3] 2L_8000954_SNP [dm6]	G	A	5.886e^-4	1	INTRON Wwox
3R	15669921	3R_15669921_SNP [dm3] 3R_19844199_SNP [dm6]	T	G	5.890e^-4	1	INTERGENIC
2R	6738795	2R_6738795_INS [dm3] 2R_10851290_INS [dm6]	A	AAA	5.932e^-4	1	INTRON CG30015
2R	6746249	2R_6746249_SNP [dm3] 2R_10858744_SNP [dm6]	C	A	5.935e^-4	1	UPSTREAM CR44302 INTRON CG30015
2R	9631952	2R_9631952_SNP [dm3] 2R_13744447_SNP [dm6]	T	C	5.936e^-4	1	INTRON fas
2L	17924145	2L_17924145_SNP [dm3] 2L_17924145_SNP [dm6]	T	G	5.957e^-4	1	INTERGENIC
3R	13710191	3R_13710191_SNP [dm3] 3R_17884469_SNP [dm6]	A	C	5.979e^-4	1	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1080331	2R_1080331_SNP [dm3] 2R_5192826_SNP [dm6]	A	T	5.983e^-4	1	INTRON Nipped-A
3L	3627675	3L_3627675_SNP [dm3] 3L_3627675_SNP [dm6]	A	C	5.983e^-4	1	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10278174	2R_10278174_DEL [dm3] 2R_14390669_DEL [dm6]	ACTGAA	A	5.987e^-4	1	UPSTREAM CG10104 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21420598	3R_21420598_SNP [dm3] 3R_25594876_SNP [dm6]	T	A	5.999e^-4	1	UTR_5_PRIME msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	14434645	3L_14434645_SNP [dm3] 3L_14441545_SNP [dm6]	G	A	6.011e^-4	1	INTRON bbg
3L	5861615	3L_5861615_SNP [dm3] 3L_5868515_SNP [dm6]	C	A	6.012e^-4	1	INTERGENIC
2R	16954597	2R_16954597_SNP [dm3] 2R_21067092_SNP [dm6]	A	C	6.012e^-4	1	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954599	2R_16954599_SNP [dm3] 2R_21067094_SNP [dm6]	T	G	6.012e^-4	1	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954609	2R_16954609_SNP [dm3] 2R_21067104_SNP [dm6]	T	G	6.012e^-4	1	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
3R	27234506	3R_27234506_SNP [dm3] 3R_31408784_SNP [dm6]	C	T	6.031e^-4	1	INTRON Gprk2
2L	10499509	2L_10499509_SNP [dm3] 2L_10499509_SNP [dm6]	A	C	6.032e^-4	1	INTRON Myo31DF
X	18731925	X_18731925_SNP [dm3] X_18837892_SNP [dm6]	A	T	6.057e^-4	1	INTRON Pvf1
X	18731932	X_18731932_DEL [dm3] X_18837899_DEL [dm6]	TC	T	6.057e^-4	1	INTRON Pvf1
3L	13084024	3L_13084024_SNP [dm3] 3L_13090924_SNP [dm6]	T	A	6.060e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4544732	2R_4544732_SNP [dm3] 2R_8657227_SNP [dm6]	T	C	6.060e^-4	1	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14860788	3L_14860788_SNP [dm3] 3L_14867688_SNP [dm6]	A	T	6.060e^-4	1	UTR_3_PRIME CG17839 INTRON CG17839
3L	11142344	3L_11142344_SNP [dm3] 3L_11149244_SNP [dm6]	T	G	6.078e^-4	1	DOWNSTREAM CG6216 INTRON CG32082
3L	4681350	3L_4681350_SNP [dm3] 3L_4681350_SNP [dm6]	A	C	6.084e^-4	1	UTR_5_PRIME axo INTRON axo
2R	13022203	2R_13022203_SNP [dm3] 2R_17134698_SNP [dm6]	G	C	6.108e^-4	1	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
2R	996225	2R_996225_SNP [dm3] 2R_5108720_SNP [dm6]	A	T	6.111e^-4	1	INTERGENIC
3R	24675729	3R_24675729_SNP [dm3] 3R_28850007_SNP [dm6]	C	A	6.126e^-4	1	INTRON spg
2L	5894946	2L_5894946_SNP [dm3] 2L_5894946_SNP [dm6]	T	A	6.162e^-4	1	INTERGENIC
2R	15741846	2R_15741846_SNP [dm3] 2R_19854341_SNP [dm6]	T	G	6.165e^-4	1	INTERGENIC
3L	17923104	3L_17923104_SNP [dm3] 3L_17930004_SNP [dm6]	C	T	6.177e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9494541	3R_9494541_SNP [dm3] 3R_13668819_SNP [dm6]	C	T	6.197e^-4	1	SYNONYMOUS_CODING Task6
2L	14358792	2L_14358792_SNP [dm3] 2L_14358792_SNP [dm6]	A	C	6.207e^-4	1	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	2310896	3L_2310896_SNP [dm3] 3L_2310896_SNP [dm6]	T	A	6.208e^-4	1	INTERGENIC
2L	15812053	2L_15812053_SNP [dm3] 2L_15812053_SNP [dm6]	G	A	6.211e^-4	1	SYNONYMOUS_CODING CG42876
2R	5077262	2R_5077262_SNP [dm3] 2R_9189757_SNP [dm6]	A	T	6.234e^-4	1	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_sens
3L	3287330	3L_3287330_SNP [dm3] 3L_3287330_SNP [dm6]	G	A	6.235e^-4	1	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
3L	12947887	3L_12947887_DEL [dm3] 3L_12954787_DEL [dm6]	CGCA	AC	6.245e^-4	1	UPSTREAM CG10752 INTERGENIC
X	1324982	X_1324982_SNP [dm3] X_1430949_SNP [dm6]	A	G	6.246e^-4	1	INTRON futsch	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5490801	2L_5490801_SNP [dm3] 2L_5490801_SNP [dm6]	G	C	6.249e^-4	1	INTERGENIC
3L	477095	3L_477095_SNP [dm3] 3L_477095_SNP [dm6]	A	T	6.250e^-4	1	INTRON klar
X	19646039	X_19646039_SNP [dm3] X_19752006_SNP [dm6]	A	G	6.256e^-4	1	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10091939	2L_10091939_SNP [dm3] 2L_10091939_SNP [dm6]	A	G	6.265e^-4	1	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7579760	2L_7579760_SNP [dm3] 2L_7579760_SNP [dm6]	T	A	6.266e^-4	1	UPSTREAM RapGAP1 INTERGENIC
3L	2559800	3L_2559800_SNP [dm3] 3L_2559800_SNP [dm6]	G	A	6.270e^-4	1	INTRON msn
3L	22970400	3L_22970400_SNP [dm3] 3L_22977300_SNP [dm6]	C	G	6.274e^-4	1	INTERGENIC	transposable element FlyBase
2R	8594425	2R_8594425_INS [dm3] 2R_12706920_INS [dm6]	A	AA	6.288e^-4	1	INTRON CG42663
2L	5895245	2L_5895245_SNP [dm3] 2L_5895245_SNP [dm6]	T	G	6.300e^-4	1	INTERGENIC
2R	9350889	2R_9350889_SNP [dm3] 2R_13463384_SNP [dm6]	A	G	6.304e^-4	1	INTRON arr
2R	2619007	2R_2619007_DEL [dm3] 2R_6731502_DEL [dm6]	AATAC	A	6.326e^-4	1	INTRON l_2_01289
3L	13037986	3L_13037986_SNP [dm3] 3L_13044886_SNP [dm6]	T	A	6.335e^-4	1	DOWNSTREAM RpS4 INTRON Syx13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21921850	3R_21921850_DEL [dm3] 3R_26096128_DEL [dm6]	TCTGC	T	6.343e^-4	1	INTRON dys	regulatory region REDfly_CRMs
3L	5862941	3L_5862941_DEL [dm3] 3L_5869841_DEL [dm6]	ATGTCGCCGA	A	6.346e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	20321602	X_20321602_DEL [dm3] X_20450575_DEL [dm6]	ACAA	A	6.349e^-4	1	INTRON CG32506
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	6.356e^-4	1	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5806353	2L_5806353_SNP [dm3] 2L_5806353_SNP [dm6]	C	A	6.360e^-4	1	INTRON CG11034
X	4916062	X_4916062_INS [dm3] X_5022029_INS [dm6]	A	AAA	6.364e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
3L	3238318	3L_3238318_SNP [dm3] 3L_3238318_SNP [dm6]	C	A	6.369e^-4	1	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
3L	14168305	3L_14168305_SNP [dm3] 3L_14175205_SNP [dm6]	A	G	6.376e^-4	1	DOWNSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sbb
3L	17902944	3L_17902944_SNP [dm3] 3L_17909844_SNP [dm6]	A	G	6.383e^-4	1	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
2L	9966193	2L_9966193_SNP [dm3] 2L_9966193_SNP [dm6]	G	A	6.387e^-4	1	SYNONYMOUS_CODING Dref	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13701989	3L_13701989_SNP [dm3] 3L_13708889_SNP [dm6]	T	A	6.387e^-4	1	INTRON bru-3
3R	17686871	3R_17686871_SNP [dm3] 3R_21861149_SNP [dm6]	A	C	6.396e^-4	1	UPSTREAM CR45644 DOWNSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3582514	3L_3582514_DEL [dm3] 3L_3582514_DEL [dm6]	AG	A	6.408e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_inv
X	2656967	X_2656967_SNP [dm3] X_2762934_SNP [dm6]	A	T	6.410e^-4	1	INTRON kirre
2L	8003655	2L_8003655_SNP [dm3] 2L_8003655_SNP [dm6]	C	T	6.413e^-4	1	NON_SYNONYMOUS_CODING Wwox DOWNSTREAM Spn28Dc
3R	7933447	3R_7933447_SNP [dm3] 3R_12107725_SNP [dm6]	T	G	6.415e^-4	1	NON_SYNONYMOUS_CODING dpr17	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3536953	3L_3536953_SNP [dm3] 3L_3536953_SNP [dm6]	G	A	6.421e^-4	1	INTRON Eip63E
3L	13083945	3L_13083945_SNP [dm3] 3L_13090845_SNP [dm6]	T	A	6.423e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16431742	X_16431742_SNP [dm3] X_16537709_SNP [dm6]	C	A	6.429e^-4	1	INTERGENIC
3R	14413733	3R_14413733_SNP [dm3] 3R_18588011_SNP [dm6]	A	T	6.430e^-4	1	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20300069	3R_20300069_SNP [dm3] 3R_24474347_SNP [dm6]	T	C	6.436e^-4	1	INTERGENIC
3R	14413388	3R_14413388_SNP [dm3] 3R_18587666_SNP [dm6]	A	G	6.453e^-4	1	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20430901	X_20430901_SNP [dm3] X_20559874_SNP [dm6]	C	T	6.483e^-4	1	INTRON RunxB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15152056	2R_15152056_SNP [dm3] 2R_19264551_SNP [dm6]	T	C	6.485e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22558348	3R_22558348_SNP [dm3] 3R_26732626_SNP [dm6]	C	T	6.505e^-4	1	INTERGENIC
2L	1027462	2L_1027462_SNP [dm3] 2L_1027462_SNP [dm6]	C	G	6.509e^-4	1	UPSTREAM CG4375 INTRON IA-2
2R	16954615	2R_16954615_SNP [dm3] 2R_21067110_SNP [dm6]	T	A	6.511e^-4	1	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
X	13344613	X_13344613_SNP [dm3] X_13450580_SNP [dm6]	G	A	6.521e^-4	1	INTRON Neto
3R	18450910	3R_18450910_DEL [dm3] 3R_22625188_DEL [dm6]	ACA	A	6.526e^-4	1	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19403640	2R_19403640_SNP [dm3] 2R_23516117_SNP [dm6]	A	G	6.538e^-4	1	INTERGENIC
2L	14722157	2L_14722157_SNP [dm3] 2L_14722157_SNP [dm6]	C	A	6.542e^-4	1	INTERGENIC
3R	6529011	3R_6529011_SNP [dm3] 3R_10703289_SNP [dm6]	T	C	6.543e^-4	1	UTR_3_PRIME pug DOWNSTREAM CG31391
X	8585742	X_8585742_SNP [dm3] X_8691709_SNP [dm6]	G	A	6.552e^-4	1	UTR_3_PRIME Ogg1 DOWNSTREAM CG11294
2R	7634940	2R_7634940_SNP [dm3] 2R_11747435_SNP [dm6]	T	A	6.558e^-4	1	INTERGENIC
2R	19244583	2R_19244583_SNP [dm3] 2R_23357060_SNP [dm6]	G	A	6.559e^-4	1	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14358896	2L_14358896_SNP [dm3] 2L_14358896_SNP [dm6]	A	G	6.563e^-4	1	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	12460907	2R_12460907_SNP [dm3] 2R_16573402_SNP [dm6]	T	A	6.568e^-4	1	NON_SYNONYMOUS_CODING CG4927
3R	20850574	3R_20850574_SNP [dm3] 3R_25024852_SNP [dm6]	G	A	6.571e^-4	1	SYNONYMOUS_CODING CG11781 UPSTREAM Hr96 DOWNSTREAM beta4GalT7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4313089	3L_4313089_SNP [dm3] 3L_4313089_SNP [dm6]	G	C	6.572e^-4	1	UPSTREAM Claspin INTERGENIC
3L	9604211	3L_9604211_SNP [dm3] 3L_9611111_SNP [dm6]	A	G	6.578e^-4	1	INTRON CG3280
2R	16722512	2R_16722512_SNP [dm3] 2R_20835007_SNP [dm6]	T	A	6.596e^-4	1	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16722518	2R_16722518_SNP [dm3] 2R_20835013_SNP [dm6]	T	A	6.596e^-4	1	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16722521	2R_16722521_SNP [dm3] 2R_20835016_SNP [dm6]	T	A	6.596e^-4	1	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16722525	2R_16722525_DEL [dm3] 2R_20835020_DEL [dm6]	TA	T	6.596e^-4	1	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3133926	3L_3133926_SNP [dm3] 3L_3133926_SNP [dm6]	A	T	6.596e^-4	1	UTR_5_PRIME CG11537 INTRON CG11537
X	18988040	X_18988040_SNP [dm3] X_19094007_SNP [dm6]	G	A	6.602e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12179891	3L_12179891_SNP [dm3] 3L_12186791_SNP [dm6]	C	A	6.609e^-4	1	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17787690	2R_17787690_SNP [dm3] 2R_21900185_SNP [dm6]	G	A	6.610e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19122440	X_19122440_SNP [dm3] X_19228407_SNP [dm6]	A	G	6.612e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19122442	X_19122442_SNP [dm3] X_19228409_SNP [dm6]	T	A	6.612e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19644659	2R_19644659_SNP [dm3] 2R_23757136_SNP [dm6]	C	A	6.613e^-4	1	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
3R	780450	3R_780450_INS [dm3] 3R_4954728_INS [dm6]	G	GCTGG	6.624e^-4	1	INTRON CG14661
3R	5472324	3R_5472324_SNP [dm3] 3R_9646602_SNP [dm6]	G	C	6.626e^-4	1	UPSTREAM Fst INTRON Dh44
3L	486953	3L_486953_SNP [dm3] 3L_486953_SNP [dm6]	T	C	6.637e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8446840	X_8446840_INS [dm3] X_8552807_INS [dm6]	A	ACA	6.640e^-4	1	UTR_3_PRIME Nrg DOWNSTREAM Nrg
2R	17424334	2R_17424334_SNP [dm3] 2R_21536829_SNP [dm6]	T	G	6.643e^-4	1	UPSTREAM CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	788301	3R_788301_DEL [dm3] 3R_4962579_DEL [dm6]	TGTT	T	6.645e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	20236536	X_20236536_SNP [dm3] X_20365509_SNP [dm6]	A	G	6.646e^-4	1	INTERGENIC
X	2003060	X_2003060_SNP [dm3] X_2109027_SNP [dm6]	A	G	6.647e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5183748	3L_5183748_SNP [dm3] 3L_5190648_SNP [dm6]	T	A	6.653e^-4	1	INTRON shep
3R	25063084	3R_25063084_SNP [dm3] 3R_29237362_SNP [dm6]	T	A	6.655e^-4	1	SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17939803	3L_17939803_SNP [dm3] 3L_17946703_SNP [dm6]	C	G	6.665e^-4	1	DOWNSTREAM CG43174 & 1 other INTERGENIC
3R	5438356	3R_5438356_SNP [dm3] 3R_9612634_SNP [dm6]	G	C	6.669e^-4	1	INTRON CG8312
2L	8970139	2L_8970139_SNP [dm3] 2L_8970139_SNP [dm6]	A	T	6.672e^-4	1	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
2L	9949473	2L_9949473_SNP [dm3] 2L_9949473_SNP [dm6]	A	T	6.677e^-4	1	DOWNSTREAM mir-87 INTERGENIC
2L	11421970	2L_11421970_DEL [dm3] 2L_11421970_DEL [dm6]	ATTTATAGCA	A	6.682e^-4	1	INTERGENIC
2R	4587632	2R_4587632_SNP [dm3] 2R_8700127_SNP [dm6]	G	A	6.690e^-4	1	DOWNSTREAM CG8584 INTERGENIC
3R	23041388	3R_23041388_SNP [dm3] 3R_27215666_SNP [dm6]	A	T	6.698e^-4	1	DOWNSTREAM CR34006 INTERGENIC
2L	9741514	2L_9741514_SNP [dm3] 2L_9741514_SNP [dm6]	A	G	6.726e^-4	1	INTRON Nckx30C

Missing results

By genomic position
Variant impact
Gene name

pc_Deletion_PElem_SC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results