DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.765e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.01449

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	2.8847	0.0894

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1635 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8477222	X_8477222_SNP [dm3] X_8583189_SNP [dm6]	G	A	1.802e^-6	0.815	INTRON CG12065
3L	11208027	3L_11208027_SNP [dm3] 3L_11214927_SNP [dm6]	A	G	2.703e^-6	0.815	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	11208193	3L_11208193_SNP [dm3] 3L_11215093_SNP [dm6]	C	G	2.960e^-6	0.815	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2L	9132306	2L_9132306_SNP [dm3] 2L_9132306_SNP [dm6]	A	T	3.026e^-6	0.815	INTRON CG32982
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	3.345e^-6	0.815	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5895016	2L_5895016_SNP [dm3] 2L_5895016_SNP [dm6]	G	A	3.418e^-6	0.815	INTERGENIC
2R	20201980	2R_20201980_SNP [dm3] 2R_24314457_SNP [dm6]	T	A	4.066e^-6	0.815	INTERGENIC
2R	5904225	2R_5904225_SNP [dm3] 2R_10016720_SNP [dm6]	T	C	4.295e^-6	0.815	INTRON Pka-R2
2L	17682283	2L_17682283_SNP [dm3] 2L_17682283_SNP [dm6]	T	G	4.772e^-6	0.815	INTRON CadN
3L	12035373	3L_12035373_SNP [dm3] 3L_12042273_SNP [dm6]	T	A	5.118e^-6	0.815	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2L	6886174	2L_6886174_SNP [dm3] 2L_6886174_SNP [dm6]	T	C	5.856e^-6	0.815	INTRON Nlg2
2L	5895011	2L_5895011_SNP [dm3] 2L_5895011_SNP [dm6]	G	A	6.319e^-6	0.815	INTERGENIC
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	6.698e^-6	0.815	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	6.698e^-6	0.815	DOWNSTREAM Mks1 INTERGENIC
3L	12035409	3L_12035409_SNP [dm3] 3L_12042309_SNP [dm6]	C	A	7.106e^-6	0.815	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
X	12387047	X_12387047_SNP [dm3] X_12493014_SNP [dm6]	A	C	7.291e^-6	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	8.297e^-6	0.815	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5283898	2R_5283898_SNP [dm3] 2R_9396393_SNP [dm6]	C	A	8.663e^-6	0.815	UTR_3_PRIME CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	9.550e^-6	0.815	SYNONYMOUS_CODING Mks1
3L	8840699	3L_8840699_SNP [dm3] 3L_8847599_SNP [dm6]	T	A	9.794e^-6	0.815	INTRON dally
2R	5285409	2R_5285409_SNP [dm3] 2R_9397904_SNP [dm6]	G	A	9.930e^-6	0.815	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11208298	3L_11208298_SNP [dm3] 3L_11215198_SNP [dm6]	C	A	1.120e^-5	0.815	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	2335729	3L_2335729_SNP [dm3] 3L_2335729_SNP [dm6]	T	G	1.167e^-5	0.815	INTRON MsR1
3R	5201224	3R_5201224_SNP [dm3] 3R_9375502_SNP [dm6]	C	T	1.172e^-5	0.815	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
3L	17902944	3L_17902944_SNP [dm3] 3L_17909844_SNP [dm6]	A	G	1.412e^-5	0.815	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
3L	8840684	3L_8840684_SNP [dm3] 3L_8847584_SNP [dm6]	C	G	1.539e^-5	0.815	INTRON dally
2R	7634908	2R_7634908_SNP [dm3] 2R_11747403_SNP [dm6]	T	C	1.568e^-5	0.815	INTERGENIC
3L	11715659	3L_11715659_SNP [dm3] 3L_11722559_SNP [dm6]	G	A	1.583e^-5	0.815	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	1.645e^-5	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	1.645e^-5	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	1.645e^-5	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	1.645e^-5	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	1.645e^-5	0.815	DOWNSTREAM Lsp1alpha INTERGENIC
2L	5867149	2L_5867149_SNP [dm3] 2L_5867149_SNP [dm6]	C	T	1.700e^-5	0.815	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2R	2895304	2R_2895304_SNP [dm3] 2R_7007799_SNP [dm6]	G	A	1.704e^-5	0.815	NON_SYNONYMOUS_CODING Tsp42Ec	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11896397	X_11896397_INS [dm3] X_12002364_INS [dm6]	T	TT	1.753e^-5	0.815	UTR_5_PRIME fw UPSTREAM fw
3R	11566531	3R_11566531_SNP [dm3] 3R_15740809_SNP [dm6]	G	T	1.777e^-5	0.815	INTERGENIC
3R	11566547	3R_11566547_SNP [dm3] 3R_15740825_SNP [dm6]	A	G	1.777e^-5	0.815	INTERGENIC
2R	7634940	2R_7634940_SNP [dm3] 2R_11747435_SNP [dm6]	T	A	1.792e^-5	0.815	INTERGENIC
2L	2629899	2L_2629899_SNP [dm3] 2L_2629899_SNP [dm6]	G	A	1.813e^-5	0.815	INTERGENIC
3L	2559825	3L_2559825_SNP [dm3] 3L_2559825_SNP [dm6]	T	A	1.887e^-5	0.815	INTRON msn
X	12388447	X_12388447_DEL [dm3] X_12494414_DEL [dm6]	TA	T	1.919e^-5	0.815	UTR_3_PRIME Mks1
3L	7440662	3L_7440662_SNP [dm3] 3L_7447562_SNP [dm6]	G	A	2.023e^-5	0.815	INTRON CG42458
3L	7440731	3L_7440731_SNP [dm3] 3L_7447631_SNP [dm6]	A	G	2.023e^-5	0.815	INTRON CG42458
3L	12035406	3L_12035406_SNP [dm3] 3L_12042306_SNP [dm6]	T	C	2.064e^-5	0.815	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	12035410	3L_12035410_SNP [dm3] 3L_12042310_SNP [dm6]	C	G	2.064e^-5	0.815	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	12560215	3L_12560215_SNP [dm3] 3L_12567115_SNP [dm6]	T	A	2.116e^-5	0.818	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11715678	3L_11715678_SNP [dm3] 3L_11722578_SNP [dm6]	T	C	2.331e^-5	0.882	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7440700	3L_7440700_SNP [dm3] 3L_7447600_SNP [dm6]	T	C	2.407e^-5	0.892	INTRON CG42458
3R	18440769	3R_18440769_SNP [dm3] 3R_22615047_SNP [dm6]	A	T	2.463e^-5	0.895	SYNONYMOUS_CODING EF-G2
3L	7440778	3L_7440778_SNP [dm3] 3L_7447678_SNP [dm6]	G	T	2.552e^-5	0.908	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12282492	3L_12282492_SNP [dm3] 3L_12289392_SNP [dm6]	C	G	2.650e^-5	0.908	EXON CR45658
3L	12282496	3L_12282496_SNP [dm3] 3L_12289396_SNP [dm6]	C	T	2.650e^-5	0.908	EXON CR45658
3L	1974594	3L_1974594_SNP [dm3] 3L_1974594_SNP [dm6]	A	G	2.920e^-5	0.965	DOWNSTREAM CG1139 INTERGENIC
3R	11566583	3R_11566583_SNP [dm3] 3R_15740861_SNP [dm6]	T	C	2.969e^-5	0.965	INTERGENIC
X	14759210	X_14759210_SNP [dm3] X_14865177_SNP [dm6]	T	G	3.159e^-5	0.965	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17904485	3L_17904485_SNP [dm3] 3L_17911385_SNP [dm6]	T	G	3.197e^-5	0.965	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2629920	2L_2629920_SNP [dm3] 2L_2629920_SNP [dm6]	T	C	3.240e^-5	0.965	INTERGENIC
3L	12035289	3L_12035289_SNP [dm3] 3L_12042189_SNP [dm6]	T	C	3.374e^-5	0.965	UPSTREAM CG6793 INTRON rols
X	12387048	X_12387048_SNP [dm3] X_12493015_SNP [dm6]	A	T	3.491e^-5	0.965	DOWNSTREAM Lsp1alpha INTERGENIC
2R	6355870	2R_6355870_SNP [dm3] 2R_10468365_SNP [dm6]	C	A	3.581e^-5	0.965	SYNONYMOUS_CODING Caf1-105 UPSTREAM CG11777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	121672	2L_121672_DEL [dm3] 2L_121672_DEL [dm6]	TT	T	3.638e^-5	0.965	UTR_5_PRIME CG4822 UPSTREAM CG4822 DOWNSTREAM CG3164 INTRON CG11455
3L	13336050	3L_13336050_SNP [dm3] 3L_13342950_SNP [dm6]	T	G	3.665e^-5	0.965	DOWNSTREAM CR44559 INTERGENIC
2R	16839043	2R_16839043_DEL [dm3] 2R_20951538_DEL [dm6]	AAAGAGCATGA...	A	3.903e^-5	0.965	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17783203	3R_17783203_SNP [dm3] 3R_21957481_SNP [dm6]	G	A	4.221e^-5	0.965	INTRON Eip93F
2R	15398133	2R_15398133_SNP [dm3] 2R_19510628_SNP [dm6]	T	C	4.423e^-5	0.965	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3L	22021397	3L_22021397_SNP [dm3] 3L_22028297_SNP [dm6]	A	C	4.425e^-5	0.965	UTR_5_PRIME CG7140
3R	20298039	3R_20298039_SNP [dm3] 3R_24472317_SNP [dm6]	A	C	4.454e^-5	0.965	INTERGENIC
3R	20106625	3R_20106625_DEL [dm3] 3R_24280903_DEL [dm6]	ACGG	T	4.530e^-5	0.965		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10844907	2L_10844907_SNP [dm3] 2L_10844907_SNP [dm6]	G	C	4.615e^-5	0.965	SYNONYMOUS_CODING CG17139 START_GAINED CG17140 UTR_5_PRIME CG17140 UPSTREAM CG17140 DOWNSTREAM Porin2
2R	6961523	2R_6961523_INS [dm3] 2R_11074018_INS [dm6]	A	AA	4.674e^-5	0.965	INTRON luna
3R	13970456	3R_13970456_SNP [dm3] 3R_18144734_SNP [dm6]	G	A	4.742e^-5	0.965	INTERGENIC
3R	19544875	3R_19544875_SNP [dm3] 3R_23719153_SNP [dm6]	A	G	4.855e^-5	0.965	UPSTREAM nau DOWNSTREAM CG10232 INTERGENIC
3L	486876	3L_486876_SNP [dm3] 3L_486876_SNP [dm6]	C	A	5.092e^-5	0.965	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6252747	3R_6252747_SNP [dm3] 3R_10427025_SNP [dm6]	C	T	5.159e^-5	0.965	INTERGENIC
2R	14087413	2R_14087413_SNP [dm3] 2R_18199908_SNP [dm6]	G	A	5.227e^-5	0.965	INTERGENIC
2R	14087421	2R_14087421_SNP [dm3] 2R_18199916_SNP [dm6]	A	G	5.227e^-5	0.965	INTERGENIC
3R	26394899	3R_26394899_SNP [dm3] 3R_30569177_SNP [dm6]	G	C	5.306e^-5	0.965	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26394906	3R_26394906_SNP [dm3] 3R_30569184_SNP [dm6]	T	C	5.306e^-5	0.965	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18274472	X_18274472_SNP [dm3] X_18380439_SNP [dm6]	A	G	5.370e^-5	0.965	SYNONYMOUS_CODING CG6179 UPSTREAM por	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15182240	2L_15182240_SNP [dm3] 2L_15182240_SNP [dm6]	C	A	5.390e^-5	0.965	INTRON CG4168	TF binding site mE1_TFBS_cad
X	10613143	X_10613143_DEL [dm3] X_10719110_DEL [dm6]	TAGCATAAAGTG...	T	5.488e^-5	0.965	INTRON CG32676
X	10613157	X_10613157_SNP [dm3] X_10719124_SNP [dm6]	G	A	5.488e^-5	0.965	INTRON CG32676
X	10613158	X_10613158_SNP [dm3] X_10719125_SNP [dm6]	T	G	5.488e^-5	0.965	INTRON CG32676
2R	15742241	2R_15742241_SNP [dm3] 2R_19854736_SNP [dm6]	G	A	5.541e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7440697	3L_7440697_SNP [dm3] 3L_7447597_SNP [dm6]	A	G	5.633e^-5	0.965	INTRON CG42458
3L	17903214	3L_17903214_SNP [dm3] 3L_17910114_SNP [dm6]	A	G	5.929e^-5	0.965	SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353	TF binding site mE1_TFBS_chinmo
3L	3238210	3L_3238210_SNP [dm3] 3L_3238210_SNP [dm6]	C	G	6.061e^-5	0.965	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
2R	6738795	2R_6738795_INS [dm3] 2R_10851290_INS [dm6]	A	AAA	6.069e^-5	0.965	INTRON CG30015
2L	8396603	2L_8396603_SNP [dm3] 2L_8396603_SNP [dm6]	C	A	6.125e^-5	0.965	UPSTREAM CG13385 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	26602045	3R_26602045_SNP [dm3] 3R_30776323_SNP [dm6]	G	A	6.252e^-5	0.965	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	22030425	3R_22030425_SNP [dm3] 3R_26204703_SNP [dm6]	G	C	6.485e^-5	0.965	INTRON CR44320
2L	15371920	2L_15371920_SNP [dm3] 2L_15371920_SNP [dm6]	A	C	6.506e^-5	0.965	INTERGENIC
2R	15742229	2R_15742229_SNP [dm3] 2R_19854724_SNP [dm6]	G	A	6.704e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20201815	2R_20201815_SNP [dm3] 2R_24314292_SNP [dm6]	G	C	6.794e^-5	0.965	INTERGENIC
2R	20201954	2R_20201954_SNP [dm3] 2R_24314431_SNP [dm6]	G	A	6.794e^-5	0.965	INTERGENIC
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	6.861e^-5	0.965	EXON CR45658
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	6.861e^-5	0.965	EXON CR45658
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	6.861e^-5	0.965	EXON CR45658
3L	4313089	3L_4313089_SNP [dm3] 3L_4313089_SNP [dm6]	G	C	6.887e^-5	0.965	UPSTREAM Claspin INTERGENIC
3L	7440649	3L_7440649_SNP [dm3] 3L_7447549_SNP [dm6]	A	C	7.059e^-5	0.965	INTRON CG42458
2L	12151318	2L_12151318_SNP [dm3] 2L_12151318_SNP [dm6]	G	C	7.087e^-5	0.965	INTRON CG31760
2R	1080219	2R_1080219_SNP [dm3] 2R_5192714_SNP [dm6]	G	A	7.133e^-5	0.965	INTRON Nipped-A
3L	2335765	3L_2335765_SNP [dm3] 3L_2335765_SNP [dm6]	C	A	7.144e^-5	0.965	INTRON MsR1
3L	7440745	3L_7440745_SNP [dm3] 3L_7447645_SNP [dm6]	T	A	7.149e^-5	0.965	INTRON CG42458	TF binding site mE1_TFBS_HSA
3L	22021967	3L_22021967_SNP [dm3] 3L_22028867_SNP [dm6]	C	T	7.176e^-5	0.965	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
3L	22021972	3L_22021972_SNP [dm3] 3L_22028872_SNP [dm6]	T	C	7.176e^-5	0.965	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
2R	16013857	2R_16013857_SNP [dm3] 2R_20126352_SNP [dm6]	G	A	7.204e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10613074	X_10613074_SNP [dm3] X_10719041_SNP [dm6]	A	T	7.212e^-5	0.965	INTRON CG32676
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	7.278e^-5	0.965	INTRON fred
2L	13720632	2L_13720632_SNP [dm3] 2L_13720632_SNP [dm6]	A	T	7.402e^-5	0.965	INTERGENIC
3R	11483880	3R_11483880_SNP [dm3] 3R_15658158_SNP [dm6]	C	T	7.567e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15180943	2L_15180943_INS [dm3] 2L_15180943_INS [dm6]	C	CCCTTTTCCCC...	7.766e^-5	0.965	INTRON CG4168
2R	12011490	2R_12011490_SNP [dm3] 2R_16123985_SNP [dm6]	C	T	7.773e^-5	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	19675945	2R_19675945_SNP [dm3] 2R_23788422_SNP [dm6]	T	C	7.822e^-5	0.965	INTRON CG9850
2R	19675952	2R_19675952_SNP [dm3] 2R_23788429_SNP [dm6]	G	A	7.822e^-5	0.965	INTRON CG9850
2R	6746350	2R_6746350_SNP [dm3] 2R_10858845_SNP [dm6]	T	G	7.822e^-5	0.965	UPSTREAM CR44302 INTRON CG30015
2R	1080257	2R_1080257_DEL [dm3] 2R_5192752_DEL [dm6]	CAATCGACAGCTTACTGCAT...	C	7.869e^-5	0.965	INTRON Nipped-A
2R	1080299	2R_1080299_DEL [dm3] 2R_5192794_DEL [dm6]	GTTCG	G	7.869e^-5	0.965	INTRON Nipped-A
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	7.936e^-5	0.965	DOWNSTREAM Mks1 INTERGENIC
3L	17929647	3L_17929647_SNP [dm3] 3L_17936547_SNP [dm6]	A	C	7.949e^-5	0.965	DOWNSTREAM CG43173 INTRON CG43174
3R	24537910	3R_24537910_SNP [dm3] 3R_28712188_SNP [dm6]	T	C	7.966e^-5	0.965	INTRON htt
X	7775083	X_7775083_SNP [dm3] X_7881050_SNP [dm6]	A	G	7.975e^-5	0.965	SYNONYMOUS_CODING Ir7e DOWNSTREAM Ir7f
X	10014460	X_10014460_SNP [dm3] X_10120427_SNP [dm6]	T	G	7.993e^-5	0.965	INTRON RhoU & 1 other
3R	26097417	3R_26097417_SNP [dm3] 3R_30271695_SNP [dm6]	G	A	8.018e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26097423	3R_26097423_SNP [dm3] 3R_30271701_SNP [dm6]	T	G	8.018e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13720631	2L_13720631_SNP [dm3] 2L_13720631_SNP [dm6]	A	T	8.033e^-5	0.965	INTERGENIC
2R	6104392	2R_6104392_DEL [dm3] 2R_10216887_DEL [dm6]	CGCC	C	8.120e^-5	0.965	INTRON Hr46 & 1 other
X	10014347	X_10014347_SNP [dm3] X_10120314_SNP [dm6]	T	G	8.122e^-5	0.965	INTRON RhoU & 1 other
X	10613009	X_10613009_INS [dm3] X_10718976_INS [dm6]	TTG	AAAT	8.162e^-5	0.965	INTRON CG32676
X	10613015	X_10613015_MNP [dm3] X_10718982_MNP [dm6]	CGC	TTT	8.162e^-5	0.965	INTRON CG32676
X	10613019	X_10613019_SNP [dm3] X_10718986_SNP [dm6]	T	A	8.162e^-5	0.965	INTRON CG32676
X	10613021	X_10613021_SNP [dm3] X_10718988_SNP [dm6]	C	A	8.162e^-5	0.965	INTRON CG32676
X	10613024	X_10613024_SNP [dm3] X_10718991_SNP [dm6]	A	C	8.162e^-5	0.965	INTRON CG32676
X	10613026	X_10613026_SNP [dm3] X_10718993_SNP [dm6]	A	G	8.162e^-5	0.965	INTRON CG32676
X	10613027	X_10613027_SNP [dm3] X_10718994_SNP [dm6]	A	C	8.162e^-5	0.965	INTRON CG32676
X	10613029	X_10613029_DEL [dm3] X_10718996_DEL [dm6]	GCA	G	8.162e^-5	0.965	INTRON CG32676
X	10613048	X_10613048_SNP [dm3] X_10719015_SNP [dm6]	A	G	8.162e^-5	0.965	INTRON CG32676
X	10613053	X_10613053_MNP [dm3] X_10719020_MNP [dm6]	ACA	CAT	8.162e^-5	0.965	INTRON CG32676
X	10613097	X_10613097_SNP [dm3] X_10719064_SNP [dm6]	T	C	8.162e^-5	0.965	INTRON CG32676
X	10613101	X_10613101_SNP [dm3] X_10719068_SNP [dm6]	C	T	8.162e^-5	0.965	INTRON CG32676
X	10613102	X_10613102_SNP [dm3] X_10719069_SNP [dm6]	G	A	8.162e^-5	0.965	INTRON CG32676
X	10613133	X_10613133_SNP [dm3] X_10719100_SNP [dm6]	A	T	8.162e^-5	0.965	INTRON CG32676
2L	9150494	2L_9150494_SNP [dm3] 2L_9150494_SNP [dm6]	A	G	8.304e^-5	0.965	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11484617	3R_11484617_INS [dm3] 3R_15658895_INS [dm6]	G	TA	8.322e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17548671	3R_17548671_SNP [dm3] 3R_21722949_SNP [dm6]	G	A	8.345e^-5	0.965	EXON CR44096	TF binding site mE1_TFBS_HSA
3L	12035163	3L_12035163_SNP [dm3] 3L_12042063_SNP [dm6]	A	G	8.378e^-5	0.965	UPSTREAM CG6793 INTRON rols
3R	18430356	3R_18430356_SNP [dm3] 3R_22604634_SNP [dm6]	T	C	8.409e^-5	0.965	INTRON Efa6
3L	14659706	3L_14659706_SNP [dm3] 3L_14666606_SNP [dm6]	T	C	8.450e^-5	0.965	INTRON dlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21943996	3R_21943996_SNP [dm3] 3R_26118274_SNP [dm6]	T	G	8.544e^-5	0.965	INTRON CG31324
2L	5099455	2L_5099455_SNP [dm3] 2L_5099455_SNP [dm6]	A	T	8.604e^-5	0.965	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	13047126	3L_13047126_SNP [dm3] 3L_13054026_SNP [dm6]	A	T	8.662e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16984983	2R_16984983_SNP [dm3] 2R_21097478_SNP [dm6]	C	G	8.869e^-5	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17516849	2L_17516849_SNP [dm3] 2L_17516849_SNP [dm6]	A	T	8.993e^-5	0.965	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2L	13045266	2L_13045266_SNP [dm3] 2L_13045266_SNP [dm6]	T	C	9.057e^-5	0.965	INTRON CG9932
3L	12431675	3L_12431675_SNP [dm3] 3L_12438575_SNP [dm6]	T	A	9.143e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16358072	2L_16358072_SNP [dm3] 2L_16358072_SNP [dm6]	A	T	9.161e^-5	0.965	INTERGENIC
X	10014002	X_10014002_SNP [dm3] X_10119969_SNP [dm6]	T	G	9.239e^-5	0.965	INTRON RhoU & 1 other
3L	17681255	3L_17681255_SNP [dm3] 3L_17688155_SNP [dm6]	C	T	9.323e^-5	0.965	INTERGENIC
3R	25321801	3R_25321801_SNP [dm3] 3R_29496079_SNP [dm6]	T	A	9.348e^-5	0.965	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11483993	3R_11483993_SNP [dm3] 3R_15658271_SNP [dm6]	A	T	9.353e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4186461	2L_4186461_SNP [dm3] 2L_4186461_SNP [dm6]	A	G	9.501e^-5	0.965	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	329822	2L_329822_SNP [dm3] 2L_329822_SNP [dm6]	A	C	9.517e^-5	0.965	UPSTREAM CG43755 DOWNSTREAM CG31921 INTRON Plc21C
X	10613034	X_10613034_DEL [dm3] X_10719001_DEL [dm6]	TGG	T	9.540e^-5	0.965	INTRON CG32676
X	10613040	X_10613040_DEL [dm3] X_10719007_DEL [dm6]	TGGT	T	9.540e^-5	0.965	INTRON CG32676
3L	17902945	3L_17902945_SNP [dm3] 3L_17909845_SNP [dm6]	T	G	9.656e^-5	0.965	SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
X	18275494	X_18275494_SNP [dm3] X_18381461_SNP [dm6]	A	C	9.823e^-5	0.965	UTR_3_PRIME CG6179 DOWNSTREAM betaCOP
2R	15742494	2R_15742494_SNP [dm3] 2R_19854989_SNP [dm6]	G	T	9.946e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	20586966	3R_20586966_SNP [dm3] 3R_24761244_SNP [dm6]	T	C	1.008e^-4	0.965	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	1.031e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7237113	2L_7237113_SNP [dm3] 2L_7237113_SNP [dm6]	T	C	1.034e^-4	0.965	INTRON Ndae1
2L	5469014	2L_5469014_INS [dm3] 2L_5469014_INS [dm6]	T	ACTCC	1.035e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19675944	2R_19675944_SNP [dm3] 2R_23788421_SNP [dm6]	A	G	1.036e^-4	0.965	INTRON CG9850
3L	12035264	3L_12035264_DEL [dm3] 3L_12042164_DEL [dm6]	TT	T	1.039e^-4	0.965	UPSTREAM CG6793 INTRON rols
3L	12035267	3L_12035267_SNP [dm3] 3L_12042167_SNP [dm6]	C	T	1.039e^-4	0.965	UPSTREAM CG6793 INTRON rols
3L	3700166	3L_3700166_SNP [dm3] 3L_3700166_SNP [dm6]	A	G	1.044e^-4	0.965	INTERGENIC
3L	3700170	3L_3700170_SNP [dm3] 3L_3700170_SNP [dm6]	C	A	1.044e^-4	0.965	INTERGENIC
3R	26491986	3R_26491986_SNP [dm3] 3R_30666264_SNP [dm6]	T	C	1.049e^-4	0.965	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12011772	2R_12011772_SNP [dm3] 2R_16124267_SNP [dm6]	T	A	1.063e^-4	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	16984985	2R_16984985_SNP [dm3] 2R_21097480_SNP [dm6]	T	C	1.064e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5432700	2L_5432700_SNP [dm3] 2L_5432700_SNP [dm6]	G	A	1.069e^-4	0.965	UPSTREAM CR43714 DOWNSTREAM CR43713 & 1 other INTERGENIC
3L	3107174	3L_3107174_SNP [dm3] 3L_3107174_SNP [dm6]	T	A	1.077e^-4	0.965	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3107180	3L_3107180_SNP [dm3] 3L_3107180_SNP [dm6]	T	A	1.077e^-4	0.965	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15504954	2L_15504954_SNP [dm3] 2L_15504954_SNP [dm6]	G	T	1.079e^-4	0.965	UTR_3_PRIME lace DOWNSTREAM lace
3R	14940185	3R_14940185_SNP [dm3] 3R_19114463_SNP [dm6]	A	G	1.097e^-4	0.965	INTRON CG6040
2R	16984992	2R_16984992_SNP [dm3] 2R_21097487_SNP [dm6]	T	A	1.102e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12565915	3L_12565915_SNP [dm3] 3L_12572815_SNP [dm6]	G	A	1.105e^-4	0.965	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3675453	3L_3675453_SNP [dm3] 3L_3675453_SNP [dm6]	C	T	1.110e^-4	0.965	INTERGENIC
3L	3675487	3L_3675487_SNP [dm3] 3L_3675487_SNP [dm6]	T	G	1.110e^-4	0.965	INTERGENIC
2L	3088883	2L_3088883_SNP [dm3] 2L_3088883_SNP [dm6]	C	G	1.113e^-4	0.965	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088901	2L_3088901_SNP [dm3] 2L_3088901_SNP [dm6]	C	G	1.113e^-4	0.965	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088903	2L_3088903_SNP [dm3] 2L_3088903_SNP [dm6]	T	C	1.113e^-4	0.965	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3088933	2L_3088933_SNP [dm3] 2L_3088933_SNP [dm6]	C	A	1.113e^-4	0.965	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24466682	3R_24466682_SNP [dm3] 3R_28640960_SNP [dm6]	G	A	1.119e^-4	0.965	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9344680	3L_9344680_SNP [dm3] 3L_9351580_SNP [dm6]	A	G	1.125e^-4	0.965	UTR_3_PRIME UGP DOWNSTREAM PGRP-LF
3L	9344706	3L_9344706_SNP [dm3] 3L_9351606_SNP [dm6]	G	T	1.125e^-4	0.965	UTR_3_PRIME UGP DOWNSTREAM PGRP-LF
2R	6738773	2R_6738773_SNP [dm3] 2R_10851268_SNP [dm6]	T	G	1.130e^-4	0.965	INTRON CG30015
2R	6738777	2R_6738777_SNP [dm3] 2R_10851272_SNP [dm6]	T	C	1.130e^-4	0.965	INTRON CG30015
3R	21953565	3R_21953565_SNP [dm3] 3R_26127843_SNP [dm6]	T	A	1.135e^-4	0.965	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3R	21987341	3R_21987341_SNP [dm3] 3R_26161619_SNP [dm6]	C	T	1.145e^-4	0.965	INTERGENIC
2R	10313576	2R_10313576_SNP [dm3] 2R_14426071_SNP [dm6]	T	A	1.149e^-4	0.965	INTERGENIC
2R	19318939	2R_19318939_SNP [dm3] 2R_23431416_SNP [dm6]	T	C	1.161e^-4	0.965	INTRON CG9815
3L	3237441	3L_3237441_SNP [dm3] 3L_3237441_SNP [dm6]	C	T	1.164e^-4	0.965	SYNONYMOUS_CODING CG17746 DOWNSTREAM CG11505	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3238495	3L_3238495_SNP [dm3] 3L_3238495_SNP [dm6]	C	G	1.164e^-4	0.965	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
2L	6885819	2L_6885819_SNP [dm3] 2L_6885819_SNP [dm6]	T	C	1.166e^-4	0.965	INTRON Nlg2
2R	20201957	2R_20201957_SNP [dm3] 2R_24314434_SNP [dm6]	T	C	1.172e^-4	0.965	INTERGENIC
X	10613125	X_10613125_SNP [dm3] X_10719092_SNP [dm6]	T	G	1.174e^-4	0.965	INTRON CG32676
2R	9631946	2R_9631946_SNP [dm3] 2R_13744441_SNP [dm6]	C	A	1.175e^-4	0.965	INTRON fas
2R	9631947	2R_9631947_SNP [dm3] 2R_13744442_SNP [dm6]	C	A	1.175e^-4	0.965	INTRON fas
2R	16996408	2R_16996408_SNP [dm3] 2R_21108903_SNP [dm6]	C	G	1.204e^-4	0.965	INTRON ktub
2R	15742383	2R_15742383_SNP [dm3] 2R_19854878_SNP [dm6]	C	T	1.220e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16228326	2R_16228326_SNP [dm3] 2R_20340821_SNP [dm6]	T	C	1.223e^-4	0.965	INTERGENIC
2L	10924509	2L_10924509_SNP [dm3] 2L_10924509_SNP [dm6]	G	T	1.233e^-4	0.965	INTRON dpr2
3L	3287330	3L_3287330_SNP [dm3] 3L_3287330_SNP [dm6]	G	A	1.250e^-4	0.965	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
3R	21946524	3R_21946524_SNP [dm3] 3R_26120802_SNP [dm6]	T	C	1.258e^-4	0.965	INTRON CG31324
2R	16984982	2R_16984982_SNP [dm3] 2R_21097477_SNP [dm6]	T	G	1.268e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	314444	2L_314444_DEL [dm3] 2L_314444_DEL [dm6]	GG	G	1.273e^-4	0.965	INTRON Plc21C
2L	3690695	2L_3690695_SNP [dm3] 2L_3690695_SNP [dm6]	A	C	1.277e^-4	0.965	INTRON CG34340
2L	7230779	2L_7230779_SNP [dm3] 2L_7230779_SNP [dm6]	A	G	1.277e^-4	0.965	INTRON Ndae1
3L	12282654	3L_12282654_SNP [dm3] 3L_12289554_SNP [dm6]	C	G	1.278e^-4	0.965	EXON CR45658
3L	9133491	3L_9133491_SNP [dm3] 3L_9140391_SNP [dm6]	A	T	1.278e^-4	0.965	NON_SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14709900	3L_14709900_SNP [dm3] 3L_14716800_SNP [dm6]	T	C	1.308e^-4	0.965	INTRON ome	regulatory region REDfly_CRMs
3L	14709901	3L_14709901_SNP [dm3] 3L_14716801_SNP [dm6]	C	T	1.308e^-4	0.965	INTRON ome	regulatory region REDfly_CRMs
3R	11566544	3R_11566544_SNP [dm3] 3R_15740822_SNP [dm6]	C	G	1.312e^-4	0.965	INTERGENIC
3L	12094572	3L_12094572_SNP [dm3] 3L_12101472_SNP [dm6]	C	T	1.312e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	1.318e^-4	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	12011813	2R_12011813_SNP [dm3] 2R_16124308_SNP [dm6]	T	A	1.318e^-4	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
X	2632729	X_2632729_SNP [dm3] X_2738696_SNP [dm6]	C	T	1.338e^-4	0.965	UTR_5_PRIME crm UPSTREAM crm DOWNSTREAM Syx4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	996225	2R_996225_SNP [dm3] 2R_5108720_SNP [dm6]	A	T	1.351e^-4	0.965	INTERGENIC
2L	9130033	2L_9130033_SNP [dm3] 2L_9130033_SNP [dm6]	A	G	1.362e^-4	0.965	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14136737	2R_14136737_SNP [dm3] 2R_18249232_SNP [dm6]	C	A	1.385e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	4708090	X_4708090_INS [dm3] X_4814057_INS [dm6]	A	AGCGCACACA	1.403e^-4	0.965	INTERGENIC
2R	16954615	2R_16954615_SNP [dm3] 2R_21067110_SNP [dm6]	T	A	1.420e^-4	0.965	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6563599	2L_6563599_SNP [dm3] 2L_6563599_SNP [dm6]	C	T	1.425e^-4	0.965	SYNONYMOUS_CODING Ent2 DOWNSTREAM CG13766	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6568747	2R_6568747_SNP [dm3] 2R_10681242_SNP [dm6]	A	C	1.432e^-4	0.965	INTRON stan	TF binding site mE1_TFBS_HSA
2L	2537616	2L_2537616_SNP [dm3] 2L_2537616_SNP [dm6]	C	T	1.448e^-4	0.965	INTERGENIC
2R	6336262	2R_6336262_SNP [dm3] 2R_10448757_SNP [dm6]	A	G	1.448e^-4	0.965	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6336279	2R_6336279_SNP [dm3] 2R_10448774_SNP [dm6]	T	G	1.448e^-4	0.965	DOWNSTREAM Cyp49a1 INTRON Galphao
2L	3658786	2L_3658786_SNP [dm3] 2L_3658786_SNP [dm6]	T	A	1.449e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12225827	2L_12225827_SNP [dm3] 2L_12225827_SNP [dm6]	G	C	1.468e^-4	0.965	INTRON aret
2R	16228316	2R_16228316_SNP [dm3] 2R_20340811_SNP [dm6]	C	T	1.484e^-4	0.965	INTERGENIC
2L	10844781	2L_10844781_SNP [dm3] 2L_10844781_SNP [dm6]	T	A	1.490e^-4	0.965	UPSTREAM CG17140 INTRON CG17139 & 1 other
3R	25314665	3R_25314665_SNP [dm3] 3R_29488943_SNP [dm6]	C	A	1.492e^-4	0.965	SYNONYMOUS_CODING CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6345934	2R_6345934_SNP [dm3] 2R_10458429_SNP [dm6]	A	G	1.509e^-4	0.965	UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
3L	8880868	3L_8880868_SNP [dm3] 3L_8887768_SNP [dm6]	T	A	1.520e^-4	0.965	DOWNSTREAM CG43169 INTRON dally
X	8438736	X_8438736_SNP [dm3] X_8544703_SNP [dm6]	C	T	1.521e^-4	0.965	INTRON Nrg
3L	11427504	3L_11427504_SNP [dm3] 3L_11434404_SNP [dm6]	G	T	1.526e^-4	0.965	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	15742067	2R_15742067_SNP [dm3] 2R_19854562_SNP [dm6]	C	A	1.537e^-4	0.965	INTERGENIC
2L	17112979	2L_17112979_SNP [dm3] 2L_17112979_SNP [dm6]	A	G	1.544e^-4	0.965	INTERGENIC
3L	2523792	3L_2523792_SNP [dm3] 3L_2523792_SNP [dm6]	A	T	1.544e^-4	0.965	INTRON Spn
X	14756999	X_14756999_SNP [dm3] X_14862966_SNP [dm6]	A	G	1.546e^-4	0.965	DOWNSTREAM CG9518 INTRON Flo2
3R	2743270	3R_2743270_SNP [dm3] 3R_6917548_SNP [dm6]	C	T	1.551e^-4	0.965	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11947293	2L_11947293_DEL [dm3] 2L_11947293_DEL [dm6]	AG	A	1.555e^-4	0.965	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
3R	12910788	3R_12910788_SNP [dm3] 3R_17085066_SNP [dm6]	T	A	1.576e^-4	0.965	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	1.581e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19766820	3R_19766820_SNP [dm3] 3R_23941098_SNP [dm6]	T	C	1.585e^-4	0.965	INTRON Gdh
3R	15107828	3R_15107828_SNP [dm3] 3R_19282106_SNP [dm6]	C	T	1.586e^-4	0.965	INTERGENIC
2R	16954597	2R_16954597_SNP [dm3] 2R_21067092_SNP [dm6]	A	C	1.593e^-4	0.965	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954599	2R_16954599_SNP [dm3] 2R_21067094_SNP [dm6]	T	G	1.593e^-4	0.965	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954609	2R_16954609_SNP [dm3] 2R_21067104_SNP [dm6]	T	G	1.593e^-4	0.965	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10332521	2R_10332521_SNP [dm3] 2R_14445016_SNP [dm6]	A	C	1.596e^-4	0.965	INTRON Oaz
X	10613013	X_10613013_SNP [dm3] X_10718980_SNP [dm6]	A	T	1.599e^-4	0.965	INTRON CG32676
X	10613057	X_10613057_DEL [dm3] X_10719024_DEL [dm6]	CTA	C	1.599e^-4	0.965	INTRON CG32676
2R	12487292	2R_12487292_SNP [dm3] 2R_16599787_SNP [dm6]	T	C	1.611e^-4	0.965	SYNONYMOUS_CODING CG5089 INTRON CG8303
2L	8000954	2L_8000954_SNP [dm3] 2L_8000954_SNP [dm6]	G	A	1.613e^-4	0.965	INTRON Wwox
3L	8223482	3L_8223482_SNP [dm3] 3L_8230382_SNP [dm6]	G	T	1.627e^-4	0.965	SYNONYMOUS_CODING eIF4E-3 UPSTREAM CR43953
X	20331489	X_20331489_SNP [dm3] X_20460462_SNP [dm6]	G	A	1.631e^-4	0.965	INTRON CG32506
2L	8142218	2L_8142218_SNP [dm3] 2L_8142218_SNP [dm6]	A	T	1.650e^-4	0.965	UPSTREAM mir-4984 INTRON CG8552
2L	5475651	2L_5475651_SNP [dm3] 2L_5475651_SNP [dm6]	A	T	1.651e^-4	0.965	INTERGENIC
3L	3700180	3L_3700180_SNP [dm3] 3L_3700180_SNP [dm6]	A	T	1.661e^-4	0.965	INTERGENIC
X	13829771	X_13829771_SNP [dm3] X_13935738_SNP [dm6]	G	C	1.672e^-4	0.965	INTRON mamo
3R	22017346	3R_22017346_SNP [dm3] 3R_26191624_SNP [dm6]	T	C	1.679e^-4	0.965	UPSTREAM CG34129 INTERGENIC
3R	22017527	3R_22017527_SNP [dm3] 3R_26191805_SNP [dm6]	A	G	1.679e^-4	0.965	UPSTREAM CG34129 INTERGENIC
3R	16992225	3R_16992225_SNP [dm3] 3R_21166503_SNP [dm6]	A	G	1.692e^-4	0.965	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2R	6139565	2R_6139565_SNP [dm3] 2R_10252060_SNP [dm6]	A	G	1.695e^-4	0.965	INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5861287	2L_5861287_SNP [dm3] 2L_5861287_SNP [dm6]	A	T	1.698e^-4	0.965	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	8553780	3R_8553780_SNP [dm3] 3R_12728058_SNP [dm6]	G	A	1.699e^-4	0.965	INTRON CR44231	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10014340	X_10014340_SNP [dm3] X_10120307_SNP [dm6]	A	T	1.705e^-4	0.965	INTRON RhoU & 1 other
3R	17713591	3R_17713591_SNP [dm3] 3R_21887869_SNP [dm6]	T	G	1.709e^-4	0.965	UPSTREAM dnd INTRON CG6678
2R	16228306	2R_16228306_SNP [dm3] 2R_20340801_SNP [dm6]	T	C	1.715e^-4	0.965	INTERGENIC
3L	4680408	3L_4680408_SNP [dm3] 3L_4680408_SNP [dm6]	T	C	1.721e^-4	0.965	INTRON axo	TF binding site BDTNP1_TFBS_dl
3L	4680429	3L_4680429_SNP [dm3] 3L_4680429_SNP [dm6]	T	A	1.721e^-4	0.965	INTRON axo	TF binding site BDTNP1_TFBS_dl
3R	5685285	3R_5685285_SNP [dm3] 3R_9859563_SNP [dm6]	C	T	1.739e^-4	0.965	INTRON Teh1
3R	22017840	3R_22017840_SNP [dm3] 3R_26192118_SNP [dm6]	A	G	1.740e^-4	0.965	UPSTREAM CG34129 INTERGENIC
3R	7632760	3R_7632760_SNP [dm3] 3R_11807038_SNP [dm6]	A	C	1.778e^-4	0.965	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	15947024	3L_15947024_SNP [dm3] 3L_15953924_SNP [dm6]	T	A	1.782e^-4	0.965	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9133282	2L_9133282_SNP [dm3] 2L_9133282_SNP [dm6]	A	T	1.786e^-4	0.965	INTRON CG32982
3R	14600461	3R_14600461_SNP [dm3] 3R_18774739_SNP [dm6]	T	G	1.802e^-4	0.965	INTRON CG7720
X	8216050	X_8216050_SNP [dm3] X_8322017_SNP [dm6]	T	C	1.815e^-4	0.965	INTRON nAChRalpha3
3L	12070687	3L_12070687_SNP [dm3] 3L_12077587_SNP [dm6]	A	T	1.819e^-4	0.965	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3675459	3L_3675459_SNP [dm3] 3L_3675459_SNP [dm6]	T	C	1.828e^-4	0.965	INTERGENIC
3L	978062	3L_978062_SNP [dm3] 3L_978062_SNP [dm6]	G	A	1.864e^-4	0.965	INTRON Glut1
2R	12011805	2R_12011805_SNP [dm3] 2R_16124300_SNP [dm6]	G	A	1.894e^-4	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	12011816	2R_12011816_SNP [dm3] 2R_16124311_SNP [dm6]	C	T	1.894e^-4	0.965	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2L	3155548	2L_3155548_SNP [dm3] 2L_3155548_SNP [dm6]	A	G	1.895e^-4	0.965	INTRON Mad	TF binding site mE1_TFBS_cad
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	1.905e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13867708	2R_13867708_SNP [dm3] 2R_17980203_SNP [dm6]	C	G	1.909e^-4	0.965	INTRON dpr13
3L	7206266	3L_7206266_SNP [dm3] 3L_7213166_SNP [dm6]	G	A	1.939e^-4	0.965	INTERGENIC
3L	11721433	3L_11721433_SNP [dm3] 3L_11728333_SNP [dm6]	G	A	1.948e^-4	0.965	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
3L	17905197	3L_17905197_SNP [dm3] 3L_17912097_SNP [dm6]	A	C	1.955e^-4	0.965	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6098390	2L_6098390_SNP [dm3] 2L_6098390_SNP [dm6]	A	G	1.964e^-4	0.965	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22016913	3R_22016913_SNP [dm3] 3R_26191191_SNP [dm6]	A	G	1.969e^-4	0.965	NON_SYNONYMOUS_CODING CG34129
2L	9125072	2L_9125072_SNP [dm3] 2L_9125072_SNP [dm6]	A	T	1.986e^-4	0.965	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20201591	3R_20201591_SNP [dm3] 3R_24375869_SNP [dm6]	C	A	2.013e^-4	0.965	UPSTREAM CG17781 & 1 other INTERGENIC
2L	11931386	2L_11931386_SNP [dm3] 2L_11931386_SNP [dm6]	C	T	2.021e^-4	0.965	INTERGENIC
3R	10505377	3R_10505377_SNP [dm3] 3R_14679655_SNP [dm6]	A	T	2.038e^-4	0.965	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	19179207	3R_19179207_SNP [dm3] 3R_23353485_SNP [dm6]	C	T	2.043e^-4	0.965	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	314601	2L_314601_SNP [dm3] 2L_314601_SNP [dm6]	T	A	2.048e^-4	0.965	INTRON Plc21C
3L	14120316	3L_14120316_SNP [dm3] 3L_14127216_SNP [dm6]	C	T	2.051e^-4	0.965	INTRON Sox21b
2R	12057614	2R_12057614_SNP [dm3] 2R_16170109_SNP [dm6]	C	T	2.053e^-4	0.965	DOWNSTREAM lbk INTRON CG8435	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9150880	2L_9150880_SNP [dm3] 2L_9150880_SNP [dm6]	A	G	2.057e^-4	0.965	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9151431	2L_9151431_SNP [dm3] 2L_9151431_SNP [dm6]	T	C	2.057e^-4	0.965	SYNONYMOUS_CODING CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4315310	3L_4315310_SNP [dm3] 3L_4315310_SNP [dm6]	C	A	2.058e^-4	0.965	SYNONYMOUS_CODING Claspin
2L	7045795	2L_7045795_SNP [dm3] 2L_7045795_SNP [dm6]	G	A	2.060e^-4	0.965	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15654118	3L_15654118_SNP [dm3] 3L_15661018_SNP [dm6]	A	G	2.062e^-4	0.965	UPSTREAM Eig71Ek & 2 others DOWNSTREAM Eig71Ei INTERGENIC
3R	13780986	3R_13780986_DEL [dm3] 3R_17955264_DEL [dm6]	TT	T	2.068e^-4	0.965	INTRON cpo	TF binding site mE1_TFBS_cad
2R	14214232	2R_14214232_SNP [dm3] 2R_18326727_SNP [dm6]	A	G	2.078e^-4	0.965	INTRON sbb
2L	5432626	2L_5432626_SNP [dm3] 2L_5432626_SNP [dm6]	G	A	2.108e^-4	0.965	UPSTREAM CR43714 DOWNSTREAM CR43713 INTERGENIC
2R	16984519	2R_16984519_SNP [dm3] 2R_21097014_SNP [dm6]	G	A	2.109e^-4	0.965	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8171257	X_8171257_DEL [dm3] X_8277224_DEL [dm6]	TT	T	2.113e^-4	0.965	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636
2R	13230617	2R_13230617_SNP [dm3] 2R_17343112_SNP [dm6]	A	G	2.113e^-4	0.965	INTRON mbl
2L	2628967	2L_2628967_SNP [dm3] 2L_2628967_SNP [dm6]	T	G	2.128e^-4	0.965	INTERGENIC
3R	11484308	3R_11484308_SNP [dm3] 3R_15658586_SNP [dm6]	A	T	2.131e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14214358	2R_14214358_SNP [dm3] 2R_18326853_SNP [dm6]	T	C	2.148e^-4	0.965	INTRON sbb
2R	16985009	2R_16985009_DEL [dm3] 2R_21097504_DEL [dm6]	TT	T	2.165e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4253907	2L_4253907_SNP [dm3] 2L_4253907_SNP [dm6]	A	C	2.188e^-4	0.965	INTERGENIC
3L	9977081	3L_9977081_SNP [dm3] 3L_9983981_SNP [dm6]	A	T	2.194e^-4	0.965	INTRON dpr6
2L	2537714	2L_2537714_SNP [dm3] 2L_2537714_SNP [dm6]	A	T	2.194e^-4	0.965	INTERGENIC
2L	2537715	2L_2537715_SNP [dm3] 2L_2537715_SNP [dm6]	T	C	2.194e^-4	0.965	INTERGENIC
2L	15371921	2L_15371921_SNP [dm3] 2L_15371921_SNP [dm6]	T	A	2.195e^-4	0.965	INTERGENIC
2R	12011764	2R_12011764_SNP [dm3] 2R_16124259_SNP [dm6]	G	T	2.196e^-4	0.965	SPLICE_SITE_REGION CG30095 UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3R	24356054	3R_24356054_SNP [dm3] 3R_28530332_SNP [dm6]	C	T	2.221e^-4	0.965	NON_SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24356056	3R_24356056_SNP [dm3] 3R_28530334_SNP [dm6]	C	T	2.221e^-4	0.965	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24356917	3R_24356917_DEL [dm3] 3R_28531195_DEL [dm6]	AGAGG	CTC	2.221e^-4	0.965	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11713160	3L_11713160_SNP [dm3] 3L_11720060_SNP [dm6]	T	G	2.239e^-4	0.965	UPSTREAM Bmcp INTERGENIC
3R	6276956	3R_6276956_SNP [dm3] 3R_10451234_SNP [dm6]	C	G	2.245e^-4	0.965	INTERGENIC
2L	4840658	2L_4840658_SNP [dm3] 2L_4840658_SNP [dm6]	G	A	2.255e^-4	0.965	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7632754	3R_7632754_SNP [dm3] 3R_11807032_SNP [dm6]	T	G	2.263e^-4	0.965	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7632777	3R_7632777_SNP [dm3] 3R_11807055_SNP [dm6]	C	T	2.263e^-4	0.965	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1152343	3L_1152343_SNP [dm3] 3L_1152343_SNP [dm6]	T	A	2.268e^-4	0.965	INTRON bab2
2R	19145977	2R_19145977_SNP [dm3] 2R_23258454_SNP [dm6]	C	T	2.281e^-4	0.965	INTERGENIC
2R	20442626	2R_20442626_SNP [dm3] 2R_24555103_SNP [dm6]	G	A	2.334e^-4	0.965	INTRON CG4622 & 1 other
2R	10261764	2R_10261764_SNP [dm3] 2R_14374259_SNP [dm6]	A	T	2.343e^-4	0.965	SYNONYMOUS_CODING CG34185 DOWNSTREAM Obp50e & 1 other
3L	11897236	3L_11897236_SNP [dm3] 3L_11904136_SNP [dm6]	C	A	2.344e^-4	0.965	INTRON CG44837
3L	7440770	3L_7440770_SNP [dm3] 3L_7447670_SNP [dm6]	T	A	2.355e^-4	0.965	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14737000	3L_14737000_SNP [dm3] 3L_14743900_SNP [dm6]	G	T	2.356e^-4	0.965	INTRON ome	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14159069	3L_14159069_INS [dm3] 3L_14165969_INS [dm6]	A	ACGA	2.394e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	2.395e^-4	0.965	INTRON CG7470
2L	17112971	2L_17112971_SNP [dm3] 2L_17112971_SNP [dm6]	G	A	2.396e^-4	0.965	INTERGENIC
3R	7632775	3R_7632775_SNP [dm3] 3R_11807053_SNP [dm6]	C	G	2.420e^-4	0.965	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	17432862	X_17432862_SNP [dm3] X_17538829_SNP [dm6]	C	G	2.449e^-4	0.965	INTRON CG43658
2R	10310793	2R_10310793_SNP [dm3] 2R_14423288_SNP [dm6]	G	A	2.458e^-4	0.965	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7440775	3L_7440775_SNP [dm3] 3L_7447675_SNP [dm6]	A	T	2.461e^-4	0.965	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19181576	2R_19181576_SNP [dm3] 2R_23294053_SNP [dm6]	T	G	2.462e^-4	0.965	INTERGENIC
3L	7027303	3L_7027303_SNP [dm3] 3L_7034203_SNP [dm6]	A	T	2.465e^-4	0.965	INTRON Mp
3R	21953528	3R_21953528_INS [dm3] 3R_26127806_INS [dm6]	A	AA	2.471e^-4	0.965	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3R	22229198	3R_22229198_SNP [dm3] 3R_26403476_SNP [dm6]	A	T	2.471e^-4	0.965	INTRON ppk15
3R	17548681	3R_17548681_SNP [dm3] 3R_21722959_SNP [dm6]	A	C	2.481e^-4	0.965	EXON CR44096	TF binding site mE1_TFBS_HSA
3R	21142035	3R_21142035_DEL [dm3] 3R_25316313_DEL [dm6]	AA	A	2.482e^-4	0.965	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
2L	4303704	2L_4303704_SNP [dm3] 2L_4303704_SNP [dm6]	G	T	2.486e^-4	0.965	INTRON tutl
2L	4304026	2L_4304026_SNP [dm3] 2L_4304026_SNP [dm6]	T	A	2.486e^-4	0.965	INTRON tutl
2L	4306969	2L_4306969_SNP [dm3] 2L_4306969_SNP [dm6]	G	T	2.486e^-4	0.965	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4306970	2L_4306970_SNP [dm3] 2L_4306970_SNP [dm6]	G	T	2.486e^-4	0.965	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7398951	2L_7398951_INS [dm3] 2L_7398951_INS [dm6]	T	TT	2.493e^-4	0.965	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	673384	3L_673384_SNP [dm3] 3L_673384_SNP [dm6]	C	A	2.516e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
X	20431728	X_20431728_SNP [dm3] X_20560701_SNP [dm6]	G	A	2.590e^-4	0.965	INTRON RunxB
3L	4423872	3L_4423872_SNP [dm3] 3L_4423872_SNP [dm6]	A	G	2.590e^-4	0.965	SPLICE_SITE_REGION CG15020 INTRON CG15020
2L	6886142	2L_6886142_SNP [dm3] 2L_6886142_SNP [dm6]	G	A	2.611e^-4	0.965	INTRON Nlg2
2R	15151548	2R_15151548_SNP [dm3] 2R_19264043_SNP [dm6]	C	A	2.617e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	8954244	2L_8954244_SNP [dm3] 2L_8954244_SNP [dm6]	G	A	2.620e^-4	0.965	SYNONYMOUS_CODING CG31886	TF binding site mE1_TFBS_HSA
2R	7635090	2R_7635090_SNP [dm3] 2R_11747585_SNP [dm6]	A	C	2.620e^-4	0.965	INTERGENIC
3R	22229199	3R_22229199_SNP [dm3] 3R_26403477_SNP [dm6]	T	A	2.658e^-4	0.965	INTRON ppk15
3R	22229209	3R_22229209_SNP [dm3] 3R_26403487_SNP [dm6]	T	C	2.658e^-4	0.965	INTRON ppk15
3R	22229220	3R_22229220_SNP [dm3] 3R_26403498_SNP [dm6]	A	G	2.658e^-4	0.965	INTRON ppk15
3R	22229228	3R_22229228_SNP [dm3] 3R_26403506_SNP [dm6]	C	A	2.658e^-4	0.965	INTRON ppk15
3R	22229236	3R_22229236_SNP [dm3] 3R_26403514_SNP [dm6]	A	G	2.658e^-4	0.965	INTRON ppk15
2R	10863613	2R_10863613_SNP [dm3] 2R_14976108_SNP [dm6]	G	T	2.663e^-4	0.965	NON_SYNONYMOUS_CODING ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	486777	3L_486777_SNP [dm3] 3L_486777_SNP [dm6]	G	A	2.677e^-4	0.965	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	8354910	3L_8354910_SNP [dm3] 3L_8361810_SNP [dm6]	T	G	2.680e^-4	0.965	UPSTREAM Idh INTERGENIC
2R	16013691	2R_16013691_SNP [dm3] 2R_20126186_SNP [dm6]	C	T	2.714e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20977468	3L_20977468_SNP [dm3] 3L_20984368_SNP [dm6]	T	G	2.727e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
X	8255122	X_8255122_SNP [dm3] X_8361089_SNP [dm6]	T	G	2.730e^-4	0.965	INTRON nAChRalpha3
3L	7410630	3L_7410630_SNP [dm3] 3L_7417530_SNP [dm6]	A	G	2.731e^-4	0.965	INTERGENIC
3R	22230367	3R_22230367_SNP [dm3] 3R_26404645_SNP [dm6]	T	A	2.736e^-4	0.965	UPSTREAM ppk15 INTERGENIC
3R	22230422	3R_22230422_SNP [dm3] 3R_26404700_SNP [dm6]	C	A	2.736e^-4	0.965	INTERGENIC
3R	24482470	3R_24482470_SNP [dm3] 3R_28656748_SNP [dm6]	G	A	2.740e^-4	0.965	INTERGENIC
2L	330117	2L_330117_SNP [dm3] 2L_330117_SNP [dm6]	C	T	2.753e^-4	0.965	SYNONYMOUS_CODING CG31921 UPSTREAM CG43755 INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	9476582	2R_9476582_SNP [dm3] 2R_13589077_SNP [dm6]	G	A	2.769e^-4	0.965	INTRON CG6191 & 1 other
2R	8994813	2R_8994813_SNP [dm3] 2R_13107308_SNP [dm6]	A	T	2.770e^-4	0.965	INTERGENIC
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	2.784e^-4	0.965	INTRON CG5758
3L	409947	3L_409947_SNP [dm3] 3L_409947_SNP [dm6]	C	T	2.787e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24352607	3R_24352607_SNP [dm3] 3R_28526885_SNP [dm6]	A	G	2.790e^-4	0.965	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19647173	X_19647173_SNP [dm3] X_19753140_SNP [dm6]	T	G	2.802e^-4	0.965	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	16996424	2R_16996424_SNP [dm3] 2R_21108919_SNP [dm6]	T	G	2.809e^-4	0.965	INTRON ktub
2R	15811618	2R_15811618_SNP [dm3] 2R_19924113_SNP [dm6]	G	A	2.810e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15811631	2R_15811631_SNP [dm3] 2R_19924126_SNP [dm6]	C	A	2.810e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15811643	2R_15811643_SNP [dm3] 2R_19924138_SNP [dm6]	C	T	2.810e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15811644	2R_15811644_SNP [dm3] 2R_19924139_SNP [dm6]	T	A	2.810e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15811647	2R_15811647_SNP [dm3] 2R_19924142_SNP [dm6]	A	G	2.810e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24539623	3R_24539623_SNP [dm3] 3R_28713901_SNP [dm6]	G	T	2.828e^-4	0.965	INTRON htt
2L	334986	2L_334986_SNP [dm3] 2L_334986_SNP [dm6]	A	C	2.835e^-4	0.965	INTRON Plc21C
2R	14182719	2R_14182719_SNP [dm3] 2R_18295214_SNP [dm6]	C	T	2.837e^-4	0.965	UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb & 1 other
2R	19181571	2R_19181571_SNP [dm3] 2R_23294048_SNP [dm6]	C	T	2.838e^-4	0.965	INTERGENIC
2L	4840650	2L_4840650_SNP [dm3] 2L_4840650_SNP [dm6]	A	G	2.838e^-4	0.965	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15811545	2R_15811545_SNP [dm3] 2R_19924040_SNP [dm6]	A	C	2.841e^-4	0.965	INTERGENIC
2R	15811546	2R_15811546_SNP [dm3] 2R_19924041_SNP [dm6]	A	G	2.841e^-4	0.965	INTERGENIC
2R	15811560	2R_15811560_SNP [dm3] 2R_19924055_SNP [dm6]	A	C	2.841e^-4	0.965	INTERGENIC
2R	15811577	2R_15811577_SNP [dm3] 2R_19924072_SNP [dm6]	T	A	2.841e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15811586	2R_15811586_SNP [dm3] 2R_19924081_SNP [dm6]	G	A	2.841e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
X	19019237	X_19019237_SNP [dm3] X_19125204_SNP [dm6]	T	C	2.843e^-4	0.965	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
3L	14506429	3L_14506429_SNP [dm3] 3L_14513329_SNP [dm6]	A	T	2.874e^-4	0.965	INTRON bbg	TF binding site mE1_TFBS_bab1
2L	281867	2L_281867_INS [dm3] 2L_281867_INS [dm6]	A	AA	2.889e^-4	0.965	UTR_3_PRIME smo & 1 other DOWNSTREAM CG11601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3924185	X_3924185_SNP [dm3] X_4030152_SNP [dm6]	C	T	2.897e^-4	0.965	INTERGENIC
3R	8733550	3R_8733550_SNP [dm3] 3R_12907828_SNP [dm6]	C	G	2.898e^-4	0.965	INTERGENIC
3L	3755412	3L_3755412_SNP [dm3] 3L_3755412_SNP [dm6]	T	A	2.898e^-4	0.965	UPSTREAM ppk27 INTRON CG32264
2R	13817184	2R_13817184_INS [dm3] 2R_17929679_INS [dm6]	G	GTCG	2.898e^-4	0.965	INTERGENIC
3L	21801607	3L_21801607_SNP [dm3] 3L_21808507_SNP [dm6]	C	T	2.910e^-4	0.965	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16996360	2R_16996360_SNP [dm3] 2R_21108855_SNP [dm6]	G	T	2.910e^-4	0.965	INTRON ktub
3L	13373022	3L_13373022_SNP [dm3] 3L_13379922_SNP [dm6]	C	T	2.932e^-4	0.965	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7472488	3L_7472488_SNP [dm3] 3L_7479388_SNP [dm6]	C	T	2.933e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10250630	2R_10250630_SNP [dm3] 2R_14363125_SNP [dm6]	C	T	2.934e^-4	0.965	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4515216	3L_4515216_SNP [dm3] 3L_4515216_SNP [dm6]	C	G	2.937e^-4	0.965	NON_SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2R	10886035	2R_10886035_DEL [dm3] 2R_14998530_DEL [dm6]	TAT	T	2.938e^-4	0.965	INTERGENIC
2R	14087367	2R_14087367_SNP [dm3] 2R_18199862_SNP [dm6]	T	G	2.953e^-4	0.965	INTERGENIC
3R	25958087	3R_25958087_SNP [dm3] 3R_30132365_SNP [dm6]	C	G	2.956e^-4	0.965	UTR_5_PRIME CG31029 DOWNSTREAM Tpi
2L	12268989	2L_12268989_MNP [dm3] 2L_12268989_MNP [dm6]	ACAACA	TTGTGT	2.962e^-4	0.965	INTRON aret
2L	12268996	2L_12268996_SNP [dm3] 2L_12268996_SNP [dm6]	G	C	2.962e^-4	0.965	INTRON aret
2L	12269000	2L_12269000_SNP [dm3] 2L_12269000_SNP [dm6]	A	G	2.962e^-4	0.965	INTRON aret
2L	12269003	2L_12269003_SNP [dm3] 2L_12269003_SNP [dm6]	T	A	2.962e^-4	0.965	INTRON aret
2L	4840651	2L_4840651_SNP [dm3] 2L_4840651_SNP [dm6]	T	A	2.984e^-4	0.965	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8880883	3L_8880883_SNP [dm3] 3L_8887783_SNP [dm6]	C	T	2.991e^-4	0.965	DOWNSTREAM CG43169 INTRON dally
3R	17548678	3R_17548678_SNP [dm3] 3R_21722956_SNP [dm6]	C	T	3.007e^-4	0.965	EXON CR44096	TF binding site mE1_TFBS_HSA
3L	4423886	3L_4423886_SNP [dm3] 3L_4423886_SNP [dm6]	C	T	3.016e^-4	0.965	INTRON CG15020
2L	3996053	2L_3996053_SNP [dm3] 2L_3996053_SNP [dm6]	G	T	3.017e^-4	0.965	INTERGENIC
X	20854300	X_20854300_SNP [dm3] X_20983273_SNP [dm6]	A	T	3.021e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3975426	3L_3975426_SNP [dm3] 3L_3975426_SNP [dm6]	T	C	3.023e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
2L	17682272	2L_17682272_SNP [dm3] 2L_17682272_SNP [dm6]	G	A	3.024e^-4	0.965	INTRON CadN
3R	27277773	3R_27277773_SNP [dm3] 3R_31452051_SNP [dm6]	T	C	3.030e^-4	0.965	INTRON Gprk2	TF binding site mE1_TFBS_cad
X	10064434	X_10064434_SNP [dm3] X_10170401_SNP [dm6]	C	T	3.033e^-4	0.965	INTRON CG43902 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	17112948	2L_17112948_SNP [dm3] 2L_17112948_SNP [dm6]	A	G	3.043e^-4	0.965	INTERGENIC
3R	23569262	3R_23569262_SNP [dm3] 3R_27743540_SNP [dm6]	A	G	3.053e^-4	0.965	INTRON Ets98B
2L	10918527	2L_10918527_SNP [dm3] 2L_10918527_SNP [dm6]	A	C	3.068e^-4	0.965	INTRON dpr2	TF binding site mE1_TFBS_cad
2L	5490801	2L_5490801_SNP [dm3] 2L_5490801_SNP [dm6]	G	C	3.070e^-4	0.965	INTERGENIC
X	8215956	X_8215956_SNP [dm3] X_8321923_SNP [dm6]	C	A	3.071e^-4	0.965	INTRON nAChRalpha3
X	8216097	X_8216097_SNP [dm3] X_8322064_SNP [dm6]	G	A	3.082e^-4	0.965	INTRON nAChRalpha3
2R	1368843	2R_1368843_SNP [dm3] 2R_5481338_SNP [dm6]	A	G	3.088e^-4	0.965	INTRON CG30440	transposable element FlyBase
2L	6715065	2L_6715065_SNP [dm3] 2L_6715065_SNP [dm6]	A	G	3.091e^-4	0.965	UTR_5_PRIME AkhR INTRON AkhR
3L	8587989	3L_8587989_SNP [dm3] 3L_8594889_SNP [dm6]	T	A	3.109e^-4	0.965	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7045790	2L_7045790_SNP [dm3] 2L_7045790_SNP [dm6]	T	C	3.125e^-4	0.965	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	25430399	3R_25430399_SNP [dm3] 3R_29604677_SNP [dm6]	C	T	3.126e^-4	0.965	INTRON alph
2L	18131996	2L_18131996_SNP [dm3] 2L_18131996_SNP [dm6]	C	T	3.131e^-4	0.965	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12088825	2R_12088825_SNP [dm3] 2R_16201320_SNP [dm6]	C	T	3.141e^-4	0.965	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22955546	3L_22955546_SNP [dm3] 3L_22962446_SNP [dm6]	G	A	3.152e^-4	0.965	DOWNSTREAM CR45758 INTERGENIC
3L	12299571	3L_12299571_SNP [dm3] 3L_12306471_SNP [dm6]	C	G	3.154e^-4	0.965	INTERGENIC
2L	20527139	2L_20527139_SNP [dm3] 2L_20527139_SNP [dm6]	A	T	3.154e^-4	0.965	INTERGENIC
2R	6361505	2R_6361505_SNP [dm3] 2R_10474000_SNP [dm6]	C	A	3.158e^-4	0.965	INTRON whd
2L	5099715	2L_5099715_SNP [dm3] 2L_5099715_SNP [dm6]	T	C	3.177e^-4	0.965	DOWNSTREAM CG4230 INTRON CG8680	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	15969298	3R_15969298_SNP [dm3] 3R_20143576_SNP [dm6]	A	T	3.180e^-4	0.965	INTERGENIC
2L	16453186	2L_16453186_DEL [dm3] 2L_16453186_DEL [dm6]	GTTG	G	3.188e^-4	0.965	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
3L	17940038	3L_17940038_DEL [dm3] 3L_17946938_DEL [dm6]	AG	A	3.189e^-4	0.965	DOWNSTREAM CG43174 & 1 other INTERGENIC
2L	5894986	2L_5894986_SNP [dm3] 2L_5894986_SNP [dm6]	C	T	3.218e^-4	0.965	INTERGENIC
3L	22022362	3L_22022362_SNP [dm3] 3L_22029262_SNP [dm6]	A	C	3.225e^-4	0.965	UPSTREAM CG7140 & 1 other DOWNSTREAM CG43392 INTERGENIC
2L	11352417	2L_11352417_SNP [dm3] 2L_11352417_SNP [dm6]	A	G	3.235e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
3L	11208721	3L_11208721_SNP [dm3] 3L_11215621_SNP [dm6]	G	A	3.254e^-4	0.965	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14249625	3L_14249625_SNP [dm3] 3L_14256525_SNP [dm6]	A	G	3.255e^-4	0.965	INTERGENIC
2R	5667424	2R_5667424_SNP [dm3] 2R_9779919_SNP [dm6]	A	G	3.266e^-4	0.965	UTR_5_PRIME CG1688
3R	26401883	3R_26401883_SNP [dm3] 3R_30576161_SNP [dm6]	C	A	3.268e^-4	0.965	UTR_3_PRIME tmod INTRON tmod
2L	5809333	2L_5809333_SNP [dm3] 2L_5809333_SNP [dm6]	G	A	3.272e^-4	0.965	UPSTREAM CR44575 DOWNSTREAM CG11034 INTERGENIC
2R	16984963	2R_16984963_INS [dm3] 2R_21097458_INS [dm6]	C	CC	3.289e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16984969	2R_16984969_SNP [dm3] 2R_21097464_SNP [dm6]	A	G	3.289e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9742339	3L_9742339_SNP [dm3] 3L_9749239_SNP [dm6]	C	T	3.293e^-4	0.965	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	6876934	2R_6876934_SNP [dm3] 2R_10989429_SNP [dm6]	A	T	3.313e^-4	0.965	INTRON luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	10783297	X_10783297_DEL [dm3] X_10889264_DEL [dm6]	TT	T	3.320e^-4	0.965	INTRON Ork1
3R	21353267	3R_21353267_SNP [dm3] 3R_25527545_SNP [dm6]	T	C	3.326e^-4	0.965	INTRON msi
2L	18168602	2L_18168602_SNP [dm3] 2L_18168602_SNP [dm6]	C	G	3.337e^-4	0.965	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	326145	2L_326145_SNP [dm3] 2L_326145_SNP [dm6]	G	T	3.341e^-4	0.965	INTRON Plc21C & 1 other
3L	10725362	3L_10725362_SNP [dm3] 3L_10732262_SNP [dm6]	C	T	3.344e^-4	0.965	INTERGENIC
X	4922853	X_4922853_SNP [dm3] X_5028820_SNP [dm6]	G	C	3.345e^-4	0.965	INTRON CR44833
3L	9497449	3L_9497449_SNP [dm3] 3L_9504349_SNP [dm6]	C	T	3.352e^-4	0.965	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14024712	X_14024712_SNP [dm3] X_14130679_SNP [dm6]	C	A	3.373e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15533904	X_15533904_SNP [dm3] X_15639871_SNP [dm6]	C	T	3.391e^-4	0.965	INTERGENIC
2L	5866536	2L_5866536_SNP [dm3] 2L_5866536_SNP [dm6]	A	G	3.396e^-4	0.965	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	19181771	2R_19181771_DEL [dm3] 2R_23294248_DEL [dm6]	CGCTTTCCATTCC...	C	3.397e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10332483	2R_10332483_SNP [dm3] 2R_14444978_SNP [dm6]	G	A	3.398e^-4	0.965	INTRON Oaz
2L	336183	2L_336183_SNP [dm3] 2L_336183_SNP [dm6]	G	A	3.399e^-4	0.965	SYNONYMOUS_CODING Plc21C
2L	8385090	2L_8385090_SNP [dm3] 2L_8385090_SNP [dm6]	C	T	3.405e^-4	0.965	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 INTRON CG13384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10844400	2L_10844400_SNP [dm3] 2L_10844400_SNP [dm6]	C	A	3.409e^-4	0.965	UTR_5_PRIME CG17140 UTR_3_PRIME CG17139
X	5255723	X_5255723_SNP [dm3] X_5361690_SNP [dm6]	T	A	3.411e^-4	0.965	INTRON SK
X	8216068	X_8216068_SNP [dm3] X_8322035_SNP [dm6]	C	A	3.424e^-4	0.965	INTRON nAChRalpha3
3R	24352790	3R_24352790_SNP [dm3] 3R_28527068_SNP [dm6]	G	A	3.425e^-4	0.965	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo
3L	17679401	3L_17679401_SNP [dm3] 3L_17686301_SNP [dm6]	T	A	3.452e^-4	0.965	INTERGENIC
3L	17370870	3L_17370870_INS [dm3] 3L_17377770_INS [dm6]	G	GTG	3.455e^-4	0.965	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10556460	2L_10556460_SNP [dm3] 2L_10556460_SNP [dm6]	G	A	3.457e^-4	0.965	INTRON Trim9
3R	22572109	3R_22572109_DEL [dm3] 3R_26746387_DEL [dm6]	GCGAAAACAAGGCAAAATG...	G	3.469e^-4	0.965	INTERGENIC
3R	22574026	3R_22574026_SNP [dm3] 3R_26748304_SNP [dm6]	G	C	3.469e^-4	0.965	INTERGENIC
3R	22574740	3R_22574740_SNP [dm3] 3R_26749018_SNP [dm6]	G	C	3.469e^-4	0.965	INTERGENIC
3R	22574826	3R_22574826_SNP [dm3] 3R_26749104_SNP [dm6]	C	T	3.469e^-4	0.965	INTERGENIC
3R	22576367	3R_22576367_SNP [dm3] 3R_26750645_SNP [dm6]	C	A	3.469e^-4	0.965	INTERGENIC
3R	22576911	3R_22576911_SNP [dm3] 3R_26751189_SNP [dm6]	T	C	3.469e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18291388	2R_18291388_SNP [dm3] 2R_22403883_SNP [dm6]	G	A	3.469e^-4	0.965	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3088896	2L_3088896_SNP [dm3] 2L_3088896_SNP [dm6]	G	T	3.478e^-4	0.965	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5624313	2L_5624313_SNP [dm3] 2L_5624313_SNP [dm6]	G	C	3.488e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10315458	2R_10315458_SNP [dm3] 2R_14427953_SNP [dm6]	G	A	3.489e^-4	0.965	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24517555	3R_24517555_SNP [dm3] 3R_28691833_SNP [dm6]	G	A	3.493e^-4	0.965	INTRON CG9990
2L	16371334	2L_16371334_SNP [dm3] 2L_16371334_SNP [dm6]	C	T	3.512e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	18897594	3R_18897594_SNP [dm3] 3R_23071872_SNP [dm6]	C	T	3.515e^-4	0.965	UTR_3_PRIME CG13830 DOWNSTREAM CG13830
2R	10708837	2R_10708837_SNP [dm3] 2R_14821332_SNP [dm6]	T	A	3.523e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10708840	2R_10708840_SNP [dm3] 2R_14821335_SNP [dm6]	G	A	3.523e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	14171360	2L_14171360_SNP [dm3] 2L_14171360_SNP [dm6]	A	G	3.527e^-4	0.965	INTRON CG43333
2L	8171825	2L_8171825_SNP [dm3] 2L_8171825_SNP [dm6]	T	C	3.531e^-4	0.965	INTRON Piezo
2R	18338769	2R_18338769_SNP [dm3] 2R_22451264_SNP [dm6]	G	T	3.531e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11428439	2R_11428439_SNP [dm3] 2R_15540934_SNP [dm6]	G	A	3.532e^-4	0.965	SYNONYMOUS_CODING CG8187 UPSTREAM Vha36-1 DOWNSTREAM CG30467	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21894393	X_21894393_SNP [dm3] X_22492557_SNP [dm6]	A	G	3.538e^-4	0.965	INTRON l_1_G0196
X	10014376	X_10014376_SNP [dm3] X_10120343_SNP [dm6]	T	C	3.541e^-4	0.965	INTRON RhoU & 1 other
3L	486904	3L_486904_SNP [dm3] 3L_486904_SNP [dm6]	G	A	3.542e^-4	0.965	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6354251	2R_6354251_SNP [dm3] 2R_10466746_SNP [dm6]	G	C	3.543e^-4	0.965	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6354443	2R_6354443_SNP [dm3] 2R_10466938_SNP [dm6]	C	A	3.543e^-4	0.965	NON_SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16925680	2R_16925680_DEL [dm3] 2R_21038175_DEL [dm6]	TT	T	3.551e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	4186488	2L_4186488_SNP [dm3] 2L_4186488_SNP [dm6]	T	C	3.560e^-4	0.965	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site BDTNP1_TFBS_dl
3L	9344653	3L_9344653_SNP [dm3] 3L_9351553_SNP [dm6]	T	A	3.569e^-4	0.965	UTR_3_PRIME UGP DOWNSTREAM PGRP-LF
2L	314426	2L_314426_SNP [dm3] 2L_314426_SNP [dm6]	G	T	3.589e^-4	0.965	INTRON Plc21C
3R	11435348	3R_11435348_SNP [dm3] 3R_15609626_SNP [dm6]	A	G	3.598e^-4	0.965	INTERGENIC
3L	3523122	3L_3523122_SNP [dm3] 3L_3523122_SNP [dm6]	G	T	3.599e^-4	0.965	INTRON Eip63E EXON CR45043
X	13418559	X_13418559_SNP [dm3] X_13524526_SNP [dm6]	T	A	3.611e^-4	0.965	UTR_3_PRIME Neto
2L	10844528	2L_10844528_SNP [dm3] 2L_10844528_SNP [dm6]	C	A	3.612e^-4	0.965	SYNONYMOUS_CODING CG17139 UTR_5_PRIME CG17140 UPSTREAM CG17140
3R	6493162	3R_6493162_DEL [dm3] 3R_10667440_DEL [dm6]	CTTGCAAC	C	3.615e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10013915	X_10013915_SNP [dm3] X_10119882_SNP [dm6]	T	A	3.617e^-4	0.965	INTRON RhoU & 1 other
X	15901422	X_15901422_SNP [dm3] X_16007389_SNP [dm6]	C	A	3.619e^-4	0.965	SYNONYMOUS_CODING CG12698
3L	3299745	3L_3299745_SNP [dm3] 3L_3299745_SNP [dm6]	G	A	3.630e^-4	0.965	SYNONYMOUS_CODING CG14968 DOWNSTREAM CG12009 & 1 other
3R	23783156	3R_23783156_SNP [dm3] 3R_27957434_SNP [dm6]	T	C	3.634e^-4	0.965	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad
3L	9344450	3L_9344450_SNP [dm3] 3L_9351350_SNP [dm6]	G	T	3.651e^-4	0.965	UTR_3_PRIME UGP & 1 other DOWNSTREAM UGP
3L	9344453	3L_9344453_SNP [dm3] 3L_9351353_SNP [dm6]	T	C	3.651e^-4	0.965	UTR_3_PRIME UGP & 1 other DOWNSTREAM UGP
3L	9344422	3L_9344422_SNP [dm3] 3L_9351322_SNP [dm6]	A	G	3.658e^-4	0.965	UTR_3_PRIME UGP & 1 other DOWNSTREAM UGP
3L	13162332	3L_13162332_SNP [dm3] 3L_13169232_SNP [dm6]	G	A	3.668e^-4	0.965	INTERGENIC
2L	134916	2L_134916_DEL [dm3] 2L_134916_DEL [dm6]	TATATTGATTGAGTATAACC...	T	3.678e^-4	0.965	UPSTREAM CR44185 DOWNSTREAM Gs1 INTRON CG11455
3L	5861074	3L_5861074_SNP [dm3] 3L_5867974_SNP [dm6]	C	T	3.687e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5861417	3L_5861417_SNP [dm3] 3L_5868317_SNP [dm6]	T	G	3.687e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9631952	2R_9631952_SNP [dm3] 2R_13744447_SNP [dm6]	T	C	3.689e^-4	0.965	INTRON fas
3L	21853239	3L_21853239_SNP [dm3] 3L_21860139_SNP [dm6]	G	T	3.701e^-4	0.965	INTRON mub	TF binding site mE1_TFBS_inv
3R	17543886	3R_17543886_SNP [dm3] 3R_21718164_SNP [dm6]	G	A	3.710e^-4	0.965	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	4741355	2L_4741355_SNP [dm3] 2L_4741355_SNP [dm6]	T	G	3.718e^-4	0.965	INTRON CG15630
2L	14920525	2L_14920525_SNP [dm3] 2L_14920525_SNP [dm6]	C	T	3.721e^-4	0.965	INTRON CG42313
2R	8994835	2R_8994835_SNP [dm3] 2R_13107330_SNP [dm6]	A	T	3.721e^-4	0.965	INTERGENIC
2R	7465354	2R_7465354_SNP [dm3] 2R_11577849_SNP [dm6]	T	C	3.724e^-4	0.965	UTR_3_PRIME tou
3L	4423854	3L_4423854_SNP [dm3] 3L_4423854_SNP [dm6]	C	T	3.741e^-4	0.965	SYNONYMOUS_CODING CG15020
2R	16458472	2R_16458472_SNP [dm3] 2R_20570967_SNP [dm6]	G	C	3.747e^-4	0.965	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1723350	3L_1723350_SNP [dm3] 3L_1723350_SNP [dm6]	T	C	3.750e^-4	0.965	UPSTREAM CG18171 INTRON drpr
2L	13305576	2L_13305576_SNP [dm3] 2L_13305576_SNP [dm6]	A	G	3.769e^-4	0.965	SYNONYMOUS_CODING CG43778 START_GAINED CG16825 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11208359	3L_11208359_SNP [dm3] 3L_11215259_SNP [dm6]	C	G	3.771e^-4	0.965	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2L	4152701	2L_4152701_SNP [dm3] 2L_4152701_SNP [dm6]	A	G	3.784e^-4	0.965	INTERGENIC
2R	17852857	2R_17852857_SNP [dm3] 2R_21965352_SNP [dm6]	T	G	3.796e^-4	0.965	INTRON ppk9
3R	24355882	3R_24355882_SNP [dm3] 3R_28530160_SNP [dm6]	G	A	3.806e^-4	0.965	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12733130	2R_12733130_SNP [dm3] 2R_16845625_SNP [dm6]	G	A	3.807e^-4	0.965	UPSTREAM Ugt37c1 EXON CR44466	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7398021	2L_7398021_SNP [dm3] 2L_7398021_SNP [dm6]	C	A	3.829e^-4	0.965	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	12560117	3L_12560117_SNP [dm3] 3L_12567017_SNP [dm6]	C	A	3.831e^-4	0.965	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	944489	2L_944489_SNP [dm3] 2L_944489_SNP [dm6]	C	G	3.833e^-4	0.965	INTRON CG4341
2R	19181585	2R_19181585_SNP [dm3] 2R_23294062_SNP [dm6]	T	A	3.833e^-4	0.965	INTERGENIC
3R	27211263	3R_27211263_DEL [dm3] 3R_31385541_DEL [dm6]	AA	G	3.836e^-4	0.965	INTRON CG1607
2L	16453310	2L_16453310_SNP [dm3] 2L_16453310_SNP [dm6]	A	T	3.842e^-4	0.965	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
2R	12339608	2R_12339608_SNP [dm3] 2R_16452103_SNP [dm6]	C	A	3.850e^-4	0.965	INTERGENIC
2R	7661527	2R_7661527_SNP [dm3] 2R_11774022_SNP [dm6]	G	A	3.889e^-4	0.965	INTRON ths
3R	16963503	3R_16963503_SNP [dm3] 3R_21137781_SNP [dm6]	T	G	3.891e^-4	0.965	SYNONYMOUS_CODING Ubpy UPSTREAM meigo	TF binding site BDTNP1_TFBS_dl
2L	20253298	2L_20253298_SNP [dm3] 2L_20253298_SNP [dm6]	T	A	3.904e^-4	0.965	DOWNSTREAM CR40465 INTERGENIC
2R	14501329	2R_14501329_SNP [dm3] 2R_18613824_SNP [dm6]	C	T	3.911e^-4	0.965	NON_SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7845741	2R_7845741_SNP [dm3] 2R_11958236_SNP [dm6]	T	G	3.911e^-4	0.965	INTRON CG13188
2R	16847780	2R_16847780_SNP [dm3] 2R_20960275_SNP [dm6]	C	G	3.914e^-4	0.965	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16847784	2R_16847784_SNP [dm3] 2R_20960279_SNP [dm6]	A	G	3.914e^-4	0.965	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3174508	3L_3174508_SNP [dm3] 3L_3174508_SNP [dm6]	T	C	3.918e^-4	0.965	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3174550	3L_3174550_SNP [dm3] 3L_3174550_SNP [dm6]	T	C	3.918e^-4	0.965	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21946614	3R_21946614_SNP [dm3] 3R_26120892_SNP [dm6]	T	A	3.932e^-4	0.965	INTRON CG31324
3L	9967302	3L_9967302_SNP [dm3] 3L_9974202_SNP [dm6]	A	G	3.938e^-4	0.965	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18291426	2R_18291426_SNP [dm3] 2R_22403921_SNP [dm6]	C	T	3.955e^-4	0.965	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19387652	3L_19387652_INS [dm3] 3L_19394552_INS [dm6]	T	TCT	3.956e^-4	0.965	INTRON CG32206
3L	17883393	3L_17883393_SNP [dm3] 3L_17890293_SNP [dm6]	A	G	3.977e^-4	0.965	INTRON CG7402
3L	2077960	3L_2077960_SNP [dm3] 3L_2077960_SNP [dm6]	T	C	3.977e^-4	0.965	NON_SYNONYMOUS_CODING sls SPLICE_SITE_REGION sls INTRON sls	TF binding site mE1_TFBS_sens
3L	2079722	3L_2079722_SNP [dm3] 3L_2079722_SNP [dm6]	A	T	3.977e^-4	0.965	INTRON sls
3L	20881023	3L_20881023_SNP [dm3] 3L_20887923_SNP [dm6]	C	T	3.977e^-4	0.965	EXON CR44686	TF binding site mE1_TFBS_cad
X	5845909	X_5845909_SNP [dm3] X_5951876_SNP [dm6]	A	G	3.977e^-4	0.965	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
2L	3576944	2L_3576944_SNP [dm3] 2L_3576944_SNP [dm6]	G	A	3.992e^-4	0.965	DOWNSTREAM CG43815 INTERGENIC
2L	14918440	2L_14918440_SNP [dm3] 2L_14918440_SNP [dm6]	C	T	4.000e^-4	0.965	INTRON CG42313
X	8477497	X_8477497_SNP [dm3] X_8583464_SNP [dm6]	A	G	4.000e^-4	0.965	INTRON CG12065
2L	7955855	2L_7955855_SNP [dm3] 2L_7955855_SNP [dm6]	C	A	4.000e^-4	0.965	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	5866654	2L_5866654_SNP [dm3] 2L_5866654_SNP [dm6]	A	T	4.001e^-4	0.965	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	14501230	2R_14501230_SNP [dm3] 2R_18613725_SNP [dm6]	G	A	4.010e^-4	0.965	NON_SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14501237	2R_14501237_SNP [dm3] 2R_18613732_SNP [dm6]	T	G	4.010e^-4	0.965	SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14501246	2R_14501246_SNP [dm3] 2R_18613741_SNP [dm6]	G	A	4.010e^-4	0.965	SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14501375	2R_14501375_SNP [dm3] 2R_18613870_SNP [dm6]	C	A	4.010e^-4	0.965	SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7147186	2R_7147186_SNP [dm3] 2R_11259681_SNP [dm6]	G	C	4.012e^-4	0.965	NON_SYNONYMOUS_CODING Cpr47Ec DOWNSTREAM CG13223
3L	15228422	3L_15228422_DEL [dm3] 3L_15235322_DEL [dm6]	TTT	T	4.050e^-4	0.965	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	5861699	3L_5861699_SNP [dm3] 3L_5868599_SNP [dm6]	A	T	4.055e^-4	0.965	INTERGENIC
3L	15228489	3L_15228489_SNP [dm3] 3L_15235389_SNP [dm6]	T	G	4.078e^-4	0.965	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	17943313	3L_17943313_SNP [dm3] 3L_17950213_SNP [dm6]	T	G	4.086e^-4	0.965	DOWNSTREAM Eip75B INTERGENIC
X	8171253	X_8171253_SNP [dm3] X_8277220_SNP [dm6]	G	T	4.102e^-4	0.965	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636
3L	9770681	3L_9770681_SNP [dm3] 3L_9777581_SNP [dm6]	G	T	4.131e^-4	0.965	INTRON CG8177
3L	3627657	3L_3627657_SNP [dm3] 3L_3627657_SNP [dm6]	G	A	4.153e^-4	0.965	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	331581	2L_331581_SNP [dm3] 2L_331581_SNP [dm6]	A	T	4.157e^-4	0.965	SYNONYMOUS_CODING CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6038383	2R_6038383_SNP [dm3] 2R_10150878_SNP [dm6]	G	T	4.172e^-4	0.965	SYNONYMOUS_CODING KCNQ	TF binding site mE1_TFBS_cad
2R	14501229	2R_14501229_SNP [dm3] 2R_18613724_SNP [dm6]	G	A	4.173e^-4	0.965	NON_SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21588121	3R_21588121_SNP [dm3] 3R_25762399_SNP [dm6]	T	G	4.173e^-4	0.965	UTR_5_PRIME LpR1
X	6789809	X_6789809_DEL [dm3] X_6895776_DEL [dm6]	AGTCTTTTTTAA...	A	4.175e^-4	0.965	INTERGENIC
3L	9733102	3L_9733102_SNP [dm3] 3L_9740002_SNP [dm6]	T	G	4.177e^-4	0.965	UPSTREAM CG42268 INTRON CG42268
3L	9733173	3L_9733173_SNP [dm3] 3L_9740073_SNP [dm6]	A	G	4.177e^-4	0.965	UPSTREAM CG42268 INTRON CG42268
2L	3690243	2L_3690243_SNP [dm3] 2L_3690243_SNP [dm6]	T	A	4.180e^-4	0.965	INTRON CG34340
2L	3690268	2L_3690268_SNP [dm3] 2L_3690268_SNP [dm6]	A	G	4.180e^-4	0.965	INTRON CG34340
3R	17686867	3R_17686867_SNP [dm3] 3R_21861145_SNP [dm6]	A	C	4.182e^-4	0.965	UPSTREAM CR45644 DOWNSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19137292	2R_19137292_SNP [dm3] 2R_23249769_SNP [dm6]	A	G	4.183e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7559183	2L_7559183_SNP [dm3] 2L_7559183_SNP [dm6]	C	A	4.185e^-4	0.965	INTRON RapGAP1
2L	20525130	2L_20525130_SNP [dm3] 2L_20525130_SNP [dm6]	G	T	4.185e^-4	0.965	INTERGENIC
3R	22281404	3R_22281404_SNP [dm3] 3R_26455682_SNP [dm6]	T	A	4.202e^-4	0.965	UTR_3_PRIME Pdf DOWNSTREAM CG43117
2L	4204564	2L_4204564_SNP [dm3] 2L_4204564_SNP [dm6]	C	G	4.214e^-4	0.965	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	20883098	3L_20883098_SNP [dm3] 3L_20889998_SNP [dm6]	T	G	4.216e^-4	0.965	INTERGENIC
2R	14501171	2R_14501171_SNP [dm3] 2R_18613666_SNP [dm6]	T	G	4.222e^-4	0.965	SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	841883	2L_841883_SNP [dm3] 2L_841883_SNP [dm6]	C	G	4.229e^-4	0.965	INTRON drongo
3R	6492459	3R_6492459_SNP [dm3] 3R_10666737_SNP [dm6]	G	C	4.230e^-4	0.965	INTERGENIC
2R	14501023	2R_14501023_SNP [dm3] 2R_18613518_SNP [dm6]	C	G	4.245e^-4	0.965	NON_SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13890519	3L_13890519_SNP [dm3] 3L_13897419_SNP [dm6]	A	C	4.262e^-4	0.965	INTRON dysc
3R	5223908	3R_5223908_SNP [dm3] 3R_9398186_SNP [dm6]	C	T	4.264e^-4	0.965	UPSTREAM Or85f INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25694190	3R_25694190_SNP [dm3] 3R_29868468_SNP [dm6]	A	G	4.285e^-4	0.965	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens
3R	25694205	3R_25694205_SNP [dm3] 3R_29868483_SNP [dm6]	C	A	4.285e^-4	0.965	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens
X	11098600	X_11098600_SNP [dm3] X_11204567_SNP [dm6]	C	G	4.296e^-4	0.965	INTERGENIC
2R	16984973	2R_16984973_SNP [dm3] 2R_21097468_SNP [dm6]	A	G	4.297e^-4	0.965	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19769874	2L_19769874_SNP [dm3] 2L_19769874_SNP [dm6]	G	A	4.302e^-4	0.965	UPSTREAM bsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5169580	2L_5169580_SNP [dm3] 2L_5169580_SNP [dm6]	C	A	4.315e^-4	0.965	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	12620197	3L_12620197_SNP [dm3] 3L_12627097_SNP [dm6]	T	A	4.321e^-4	0.965	UPSTREAM CR32111 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	4.329e^-4	0.965	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260071	2R_18260071_SNP [dm3] 2R_22372566_SNP [dm6]	T	A	4.329e^-4	0.965	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260089	2R_18260089_SNP [dm3] 2R_22372584_SNP [dm6]	A	C	4.329e^-4	0.965	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	4.329e^-4	0.965	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	16257004	3R_16257004_SNP [dm3] 3R_20431282_SNP [dm6]	T	C	4.333e^-4	0.965	INTRON Gfrl
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	4.341e^-4	0.965	INTRON Ork1
2L	15793033	2L_15793033_SNP [dm3] 2L_15793033_SNP [dm6]	G	A	4.343e^-4	0.965	INTERGENIC
3R	19925425	3R_19925425_SNP [dm3] 3R_24099703_SNP [dm6]	A	G	4.359e^-4	0.965	INTRON 4EHP
3R	6267495	3R_6267495_SNP [dm3] 3R_10441773_SNP [dm6]	T	C	4.376e^-4	0.965	INTERGENIC
3R	16650225	3R_16650225_SNP [dm3] 3R_20824503_SNP [dm6]	T	C	4.396e^-4	0.965	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10715629	2R_10715629_SNP [dm3] 2R_14828124_SNP [dm6]	A	G	4.407e^-4	0.965	INTERGENIC
3L	7009336	3L_7009336_SNP [dm3] 3L_7016236_SNP [dm6]	C	T	4.417e^-4	0.965	INTRON Mp
3R	20838471	3R_20838471_SNP [dm3] 3R_25012749_SNP [dm6]	G	A	4.419e^-4	0.965	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12094551	3L_12094551_SNP [dm3] 3L_12101451_SNP [dm6]	A	T	4.426e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	19418986	3L_19418986_SNP [dm3] 3L_19425886_SNP [dm6]	G	C	4.432e^-4	0.965	DOWNSTREAM CR42838 INTERGENIC
3L	11427929	3L_11427929_SNP [dm3] 3L_11434829_SNP [dm6]	G	C	4.432e^-4	0.965	SYNONYMOUS_CODING CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	2281996	X_2281996_SNP [dm3] X_2387963_SNP [dm6]	T	G	4.432e^-4	0.965	UPSTREAM PsGEF INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27211658	3R_27211658_SNP [dm3] 3R_31385936_SNP [dm6]	C	T	4.440e^-4	0.965	INTRON CG1607
2L	5099474	2L_5099474_SNP [dm3] 2L_5099474_SNP [dm6]	T	A	4.441e^-4	0.965	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	17370881	3L_17370881_INS [dm3] 3L_17377781_INS [dm6]	T	TGT	4.451e^-4	0.965	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20315893	2L_20315893_SNP [dm3] 2L_20315893_SNP [dm6]	A	G	4.468e^-4	0.965	DOWNSTREAM CR43606 INTRON spir
2L	14309789	2L_14309789_SNP [dm3] 2L_14309789_SNP [dm6]	A	T	4.469e^-4	0.965	INTRON wb	TF binding site mE1_TFBS_HSA
2R	7289924	2R_7289924_SNP [dm3] 2R_11402419_SNP [dm6]	C	T	4.477e^-4	0.965	INTERGENIC
3L	3787445	3L_3787445_SNP [dm3] 3L_3787445_SNP [dm6]	A	T	4.487e^-4	0.965	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2710021	3L_2710021_SNP [dm3] 3L_2710021_SNP [dm6]	G	A	4.493e^-4	0.965	INTRON Fife
3R	23452763	3R_23452763_SNP [dm3] 3R_27627041_SNP [dm6]	G	T	4.493e^-4	0.965	INTRON Tusp
X	20855661	X_20855661_SNP [dm3] X_20984634_SNP [dm6]	A	T	4.497e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9147836	2L_9147836_SNP [dm3] 2L_9147836_SNP [dm6]	A	G	4.502e^-4	0.965	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17449913	2R_17449913_SNP [dm3] 2R_21562408_SNP [dm6]	T	C	4.514e^-4	0.965	INTRON CG10440
3L	14086900	3L_14086900_SNP [dm3] 3L_14093800_SNP [dm6]	A	G	4.519e^-4	0.965	DOWNSTREAM Fbp1 INTERGENIC
3L	13602850	3L_13602850_SNP [dm3] 3L_13609750_SNP [dm6]	T	G	4.523e^-4	0.965	INTRON bru-3
3L	2023691	3L_2023691_SNP [dm3] 3L_2023691_SNP [dm6]	C	A	4.527e^-4	0.965	UPSTREAM CG42356 INTERGENIC
2L	4186490	2L_4186490_SNP [dm3] 2L_4186490_SNP [dm6]	A	G	4.534e^-4	0.965	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site BDTNP1_TFBS_dl
2L	16371345	2L_16371345_SNP [dm3] 2L_16371345_SNP [dm6]	G	A	4.537e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	960349	2L_960349_SNP [dm3] 2L_960349_SNP [dm6]	C	A	4.542e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15458829	2R_15458829_SNP [dm3] 2R_19571324_SNP [dm6]	G	A	4.554e^-4	0.965	INTRON sm
3R	22570843	3R_22570843_SNP [dm3] 3R_26745121_SNP [dm6]	A	G	4.560e^-4	0.965	INTERGENIC
3R	9844027	3R_9844027_SNP [dm3] 3R_14018305_SNP [dm6]	T	A	4.567e^-4	0.965	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11632100	3R_11632100_SNP [dm3] 3R_15806378_SNP [dm6]	T	C	4.577e^-4	0.965	INTRON alpha-Man-IIb
3R	11632120	3R_11632120_SNP [dm3] 3R_15806398_SNP [dm6]	C	T	4.577e^-4	0.965	INTRON alpha-Man-IIb
3R	11632225	3R_11632225_SNP [dm3] 3R_15806503_SNP [dm6]	T	C	4.577e^-4	0.965	INTRON alpha-Man-IIb
3R	11632255	3R_11632255_SNP [dm3] 3R_15806533_SNP [dm6]	C	G	4.577e^-4	0.965	INTRON alpha-Man-IIb
3R	11632284	3R_11632284_SNP [dm3] 3R_15806562_SNP [dm6]	A	C	4.577e^-4	0.965	INTRON alpha-Man-IIb
3R	11632320	3R_11632320_SNP [dm3] 3R_15806598_SNP [dm6]	A	C	4.577e^-4	0.965	INTRON alpha-Man-IIb
3L	2335700	3L_2335700_SNP [dm3] 3L_2335700_SNP [dm6]	T	C	4.578e^-4	0.965	INTRON MsR1
3L	3107171	3L_3107171_SNP [dm3] 3L_3107171_SNP [dm6]	A	C	4.582e^-4	0.965	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8381515	2L_8381515_SNP [dm3] 2L_8381515_SNP [dm6]	T	C	4.586e^-4	0.965	START_GAINED Aats-ala UTR_5_PRIME Aats-ala DOWNSTREAM CG13392 INTRON Aats-ala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	6356822	2R_6356822_SNP [dm3] 2R_10469317_SNP [dm6]	C	T	4.603e^-4	0.965	SYNONYMOUS_CODING CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19646096	X_19646096_SNP [dm3] X_19752063_SNP [dm6]	G	A	4.612e^-4	0.965	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4156086	2L_4156086_DEL [dm3] 2L_4156086_DEL [dm6]	CC	C	4.618e^-4	0.965	INTERGENIC
X	8216041	X_8216041_SNP [dm3] X_8322008_SNP [dm6]	G	A	4.630e^-4	0.965	INTRON nAChRalpha3
X	8216051	X_8216051_SNP [dm3] X_8322018_SNP [dm6]	T	A	4.630e^-4	0.965	INTRON nAChRalpha3
3L	11486247	3L_11486247_SNP [dm3] 3L_11493147_SNP [dm6]	A	C	4.632e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6271479	3R_6271479_INS [dm3] 3R_10445757_INS [dm6]	G	GCAATATGAAAAGCACA...	4.632e^-4	0.965	INTERGENIC
2R	19143429	2R_19143429_SNP [dm3] 2R_23255906_SNP [dm6]	T	C	4.637e^-4	0.965	INTERGENIC
3L	17939803	3L_17939803_SNP [dm3] 3L_17946703_SNP [dm6]	C	G	4.645e^-4	0.965	DOWNSTREAM CG43174 & 1 other INTERGENIC
2L	10844164	2L_10844164_SNP [dm3] 2L_10844164_SNP [dm6]	C	T	4.649e^-4	0.965	SYNONYMOUS_CODING CG17140 UTR_3_PRIME CG17139
3R	7633661	3R_7633661_SNP [dm3] 3R_11807939_SNP [dm6]	T	C	4.650e^-4	0.965	INTRON ClC-a
3R	26765448	3R_26765448_SNP [dm3] 3R_30939726_SNP [dm6]	A	C	4.651e^-4	0.965	INTERGENIC
2R	15401400	2R_15401400_SNP [dm3] 2R_19513895_SNP [dm6]	A	T	4.651e^-4	0.965	UPSTREAM Ir56d INTERGENIC
X	17297884	X_17297884_SNP [dm3] X_17403851_SNP [dm6]	G	A	4.673e^-4	0.965	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	20201950	2R_20201950_SNP [dm3] 2R_24314427_SNP [dm6]	G	A	4.674e^-4	0.965	INTERGENIC
2L	10127657	2L_10127657_SNP [dm3] 2L_10127657_SNP [dm6]	T	C	4.681e^-4	0.965	INTRON CG44153
2R	15669678	2R_15669678_SNP [dm3] 2R_19782173_SNP [dm6]	T	C	4.714e^-4	0.965	INTERGENIC
3L	18242555	3L_18242555_SNP [dm3] 3L_18249455_SNP [dm6]	G	A	4.737e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9008048	2R_9008048_DEL [dm3] 2R_13120543_DEL [dm6]	GAACAA	G	4.740e^-4	0.965	INTRON CG13325
3L	16740293	3L_16740293_DEL [dm3] 3L_16747193_DEL [dm6]	AAA	A	4.744e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3588299	3R_3588299_SNP [dm3] 3R_7762577_SNP [dm6]	C	T	4.746e^-4	0.965	INTRON Sp7
2R	17015740	2R_17015740_INS [dm3] 2R_21128235_INS [dm6]	C	CATGGAC	4.748e^-4	0.965	UPSTREAM mago & 1 other INTRON CG4050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	339423	2L_339423_SNP [dm3] 2L_339423_SNP [dm6]	C	T	4.754e^-4	0.965	SYNONYMOUS_CODING Plc21C
2L	341543	2L_341543_DEL [dm3] 2L_341543_DEL [dm6]	CC	C	4.754e^-4	0.965	INTRON Plc21C
2L	341194	2L_341194_SNP [dm3] 2L_341194_SNP [dm6]	A	G	4.773e^-4	0.965	INTRON Plc21C
3R	11632152	3R_11632152_SNP [dm3] 3R_15806430_SNP [dm6]	C	T	4.782e^-4	0.965	INTRON alpha-Man-IIb
3R	11632157	3R_11632157_INS [dm3] 3R_15806435_INS [dm6]	T	TT	4.782e^-4	0.965	INTRON alpha-Man-IIb
3R	11632390	3R_11632390_SNP [dm3] 3R_15806668_SNP [dm6]	T	C	4.782e^-4	0.965	INTRON alpha-Man-IIb
2L	14950716	2L_14950716_SNP [dm3] 2L_14950716_SNP [dm6]	T	G	4.796e^-4	0.965	INTRON CG42313
3R	6264469	3R_6264469_SNP [dm3] 3R_10438747_SNP [dm6]	G	C	4.800e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6276969	3R_6276969_SNP [dm3] 3R_10451247_SNP [dm6]	C	T	4.800e^-4	0.965	INTERGENIC
3L	10649164	3L_10649164_SNP [dm3] 3L_10656064_SNP [dm6]	T	G	4.803e^-4	0.965	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3L	10649193	3L_10649193_SNP [dm3] 3L_10656093_SNP [dm6]	C	T	4.803e^-4	0.965	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
X	14993920	X_14993920_SNP [dm3] X_15099887_SNP [dm6]	A	G	4.813e^-4	0.965	SYNONYMOUS_CODING Rab3-GEF
2R	6873061	2R_6873061_SNP [dm3] 2R_10985556_SNP [dm6]	C	A	4.813e^-4	0.965	INTRON luna
X	20854718	X_20854718_SNP [dm3] X_20983691_SNP [dm6]	T	C	4.820e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	20854736	X_20854736_SNP [dm3] X_20983709_SNP [dm6]	T	A	4.820e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	20855685	X_20855685_INS [dm3] X_20984658_INS [dm6]	A	AATAAACA	4.820e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
X	20855697	X_20855697_SNP [dm3] X_20984670_SNP [dm6]	A	G	4.820e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
X	20855708	X_20855708_SNP [dm3] X_20984681_SNP [dm6]	C	T	4.820e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13022706	2R_13022706_SNP [dm3] 2R_17135201_SNP [dm6]	T	A	4.823e^-4	0.965	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400	transposable element FlyBase
3L	7387053	3L_7387053_SNP [dm3] 3L_7393953_SNP [dm6]	T	C	4.828e^-4	0.965	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	215720	2L_215720_SNP [dm3] 2L_215720_SNP [dm6]	G	A	4.835e^-4	0.965	INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	313826	2L_313826_SNP [dm3] 2L_313826_SNP [dm6]	G	T	4.835e^-4	0.965	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15864783	3L_15864783_SNP [dm3] 3L_15871683_SNP [dm6]	C	G	4.841e^-4	0.965	INTRON pHCl
2R	15151796	2R_15151796_SNP [dm3] 2R_19264291_SNP [dm6]	A	C	4.852e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17668372	3L_17668372_SNP [dm3] 3L_17675272_SNP [dm6]	T	C	4.864e^-4	0.965	INTRON CG34251
2R	17736037	2R_17736037_SNP [dm3] 2R_21848532_SNP [dm6]	C	T	4.870e^-4	0.965	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
3L	399122	3L_399122_SNP [dm3] 3L_399122_SNP [dm6]	T	A	4.870e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3627675	3L_3627675_SNP [dm3] 3L_3627675_SNP [dm6]	A	C	4.874e^-4	0.965	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	2608447	X_2608447_SNP [dm3] X_2714414_SNP [dm6]	A	C	4.875e^-4	0.965	NON_SYNONYMOUS_CODING CG2694 UTR_5_PRIME CG2694 UPSTREAM CG2685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	12827049	3L_12827049_SNP [dm3] 3L_12833949_SNP [dm6]	T	A	4.887e^-4	0.965	INTRON CG10960	TF binding site BDTNP1_TFBS_dl
2R	14501236	2R_14501236_SNP [dm3] 2R_18613731_SNP [dm6]	T	A	4.900e^-4	0.965	NON_SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	259094	2L_259094_SNP [dm3] 2L_259094_SNP [dm6]	C	T	4.917e^-4	0.965	DOWNSTREAM CG17075 INTRON CG3645
3R	26602104	3R_26602104_SNP [dm3] 3R_30776382_SNP [dm6]	T	A	4.921e^-4	0.965	INTRON zfh1
2L	2594799	2L_2594799_SNP [dm3] 2L_2594799_SNP [dm6]	G	C	4.929e^-4	0.965	INTERGENIC
3L	9977059	3L_9977059_SNP [dm3] 3L_9983959_SNP [dm6]	T	C	4.936e^-4	0.965	INTRON dpr6
3L	9977076	3L_9977076_SNP [dm3] 3L_9983976_SNP [dm6]	A	T	4.936e^-4	0.965	INTRON dpr6
3L	9977077	3L_9977077_SNP [dm3] 3L_9983977_SNP [dm6]	T	A	4.936e^-4	0.965	INTRON dpr6
3L	9977087	3L_9977087_SNP [dm3] 3L_9983987_SNP [dm6]	A	T	4.936e^-4	0.965	INTRON dpr6
3L	18489485	3L_18489485_SNP [dm3] 3L_18496385_SNP [dm6]	T	A	4.944e^-4	0.965	INTRON AstC-R2
3L	3588154	3L_3588154_SNP [dm3] 3L_3588154_SNP [dm6]	G	A	4.947e^-4	0.965	INTRON Eip63E
3L	16470855	3L_16470855_SNP [dm3] 3L_16477755_SNP [dm6]	A	T	4.953e^-4	0.965	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470867	3L_16470867_INS [dm3] 3L_16477767_INS [dm6]	A	AC	4.953e^-4	0.965	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470884	3L_16470884_SNP [dm3] 3L_16477784_SNP [dm6]	T	C	4.953e^-4	0.965	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14087354	2R_14087354_SNP [dm3] 2R_18199849_SNP [dm6]	A	G	4.976e^-4	0.965	INTERGENIC
2R	14087357	2R_14087357_SNP [dm3] 2R_18199852_SNP [dm6]	T	A	4.976e^-4	0.965	INTERGENIC
2R	14087441	2R_14087441_SNP [dm3] 2R_18199936_SNP [dm6]	C	A	4.976e^-4	0.965	INTERGENIC
2R	14087445	2R_14087445_SNP [dm3] 2R_18199940_SNP [dm6]	G	A	4.976e^-4	0.965	INTERGENIC
2R	14087450	2R_14087450_SNP [dm3] 2R_18199945_SNP [dm6]	C	T	4.976e^-4	0.965	INTERGENIC
3L	13162325	3L_13162325_SNP [dm3] 3L_13169225_SNP [dm6]	A	C	4.985e^-4	0.965	INTERGENIC
3R	17709015	3R_17709015_SNP [dm3] 3R_21883293_SNP [dm6]	G	A	4.985e^-4	0.965	SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8356131	3L_8356131_SNP [dm3] 3L_8363031_SNP [dm6]	T	C	4.987e^-4	0.965	INTERGENIC
2L	3659304	2L_3659304_SNP [dm3] 2L_3659304_SNP [dm6]	T	A	5.002e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17883391	3L_17883391_SNP [dm3] 3L_17890291_SNP [dm6]	C	T	5.004e^-4	0.965	INTRON CG7402
2L	5806377	2L_5806377_SNP [dm3] 2L_5806377_SNP [dm6]	G	T	5.007e^-4	0.965	INTRON CG11034
2L	4152873	2L_4152873_SNP [dm3] 2L_4152873_SNP [dm6]	A	T	5.009e^-4	0.965	INTERGENIC
3L	13487113	3L_13487113_SNP [dm3] 3L_13494013_SNP [dm6]	A	T	5.014e^-4	0.965	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4429466	2L_4429466_SNP [dm3] 2L_4429466_SNP [dm6]	T	C	5.016e^-4	0.965	INTRON CG15431
3L	3675442	3L_3675442_SNP [dm3] 3L_3675442_SNP [dm6]	C	A	5.022e^-4	0.965	INTERGENIC
3L	3675562	3L_3675562_SNP [dm3] 3L_3675562_SNP [dm6]	C	G	5.022e^-4	0.965	INTERGENIC
2R	15403649	2R_15403649_SNP [dm3] 2R_19516144_SNP [dm6]	C	G	5.022e^-4	0.965	INTERGENIC
3L	13057859	3L_13057859_SNP [dm3] 3L_13064759_SNP [dm6]	T	C	5.025e^-4	0.965	DOWNSTREAM CG34429 INTERGENIC
2R	9350889	2R_9350889_SNP [dm3] 2R_13463384_SNP [dm6]	A	G	5.026e^-4	0.965	INTRON arr
2R	7289984	2R_7289984_SNP [dm3] 2R_11402479_SNP [dm6]	C	T	5.046e^-4	0.965	INTERGENIC
3R	8111740	3R_8111740_SNP [dm3] 3R_12286018_SNP [dm6]	T	A	5.049e^-4	0.965	INTRON svp
2L	14020653	2L_14020653_SNP [dm3] 2L_14020653_SNP [dm6]	C	T	5.051e^-4	0.965	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7632780	3R_7632780_SNP [dm3] 3R_11807058_SNP [dm6]	C	A	5.055e^-4	0.965	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7131766	2L_7131766_SNP [dm3] 2L_7131766_SNP [dm6]	A	T	5.067e^-4	0.965	INTRON Pvf3
2R	5676211	2R_5676211_SNP [dm3] 2R_9788706_SNP [dm6]	T	G	5.072e^-4	0.965	INTRON CG1688 EXON CR44208
3R	24459165	3R_24459165_SNP [dm3] 3R_28633443_SNP [dm6]	C	G	5.073e^-4	0.965	INTRON CG10011	TF binding site BDTNP1_TFBS_dl
2R	14087419	2R_14087419_SNP [dm3] 2R_18199914_SNP [dm6]	G	A	5.076e^-4	0.965	INTERGENIC
2R	14087426	2R_14087426_SNP [dm3] 2R_18199921_SNP [dm6]	C	T	5.076e^-4	0.965	INTERGENIC
2R	14087428	2R_14087428_INS [dm3] 2R_18199923_INS [dm6]	T	TT	5.076e^-4	0.965	INTERGENIC
3L	783834	3L_783834_SNP [dm3] 3L_783834_SNP [dm6]	C	T	5.078e^-4	0.965	INTERGENIC
2R	10310844	2R_10310844_SNP [dm3] 2R_14423339_SNP [dm6]	T	C	5.081e^-4	0.965	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10094551	X_10094551_SNP [dm3] X_10200518_SNP [dm6]	A	G	5.085e^-4	0.965	INTRON CR44894
3R	17542647	3R_17542647_SNP [dm3] 3R_21716925_SNP [dm6]	G	A	5.087e^-4	0.965	INTRON CG31176
3R	17544778	3R_17544778_SNP [dm3] 3R_21719056_SNP [dm6]	C	T	5.087e^-4	0.965	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10064099	3L_10064099_DEL [dm3] 3L_10070999_DEL [dm6]	TT	T	5.088e^-4	0.965	INTRON dpr6
X	10291177	X_10291177_SNP [dm3] X_10397144_SNP [dm6]	C	T	5.092e^-4	0.965	INTRON flw
3R	26576380	3R_26576380_SNP [dm3] 3R_30750658_SNP [dm6]	A	G	5.093e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19072274	2R_19072274_SNP [dm3] 2R_23184751_SNP [dm6]	G	A	5.097e^-4	0.965	SYNONYMOUS_CODING CG13539 INTRON CG34371	TF binding site mE1_TFBS_sens
2R	12072590	2R_12072590_INS [dm3] 2R_16185085_INS [dm6]	T	TAT	5.099e^-4	0.965	UTR_3_PRIME Lis-1 DOWNSTREAM CG8441	TF binding site mE1_TFBS_HSA
3L	3700417	3L_3700417_SNP [dm3] 3L_3700417_SNP [dm6]	A	C	5.104e^-4	0.965	INTERGENIC
2R	15956718	2R_15956718_INS [dm3] 2R_20069213_INS [dm6]	A	AA	5.105e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13325101	2R_13325101_SNP [dm3] 2R_17437596_SNP [dm6]	A	C	5.106e^-4	0.965	INTRON EDTP
3R	21944900	3R_21944900_SNP [dm3] 3R_26119178_SNP [dm6]	T	C	5.109e^-4	0.965	INTRON CG31324
X	4690372	X_4690372_SNP [dm3] X_4796339_SNP [dm6]	C	T	5.130e^-4	0.965	DOWNSTREAM CG2861 INTERGENIC
2R	10715794	2R_10715794_SNP [dm3] 2R_14828289_SNP [dm6]	A	G	5.132e^-4	0.965	INTERGENIC
3L	4605946	3L_4605946_SNP [dm3] 3L_4605946_SNP [dm6]	T	C	5.135e^-4	0.965	INTRON Src64B
3R	24353138	3R_24353138_SNP [dm3] 3R_28527416_SNP [dm6]	C	A	5.144e^-4	0.965	SYNONYMOUS_CODING Ppn
3L	5861615	3L_5861615_SNP [dm3] 3L_5868515_SNP [dm6]	C	A	5.146e^-4	0.965	INTERGENIC
2R	10672660	2R_10672660_SNP [dm3] 2R_14785155_SNP [dm6]	G	A	5.154e^-4	0.965	INTRON kn
3R	7352056	3R_7352056_SNP [dm3] 3R_11526334_SNP [dm6]	G	A	5.155e^-4	0.965	INTERGENIC
3L	2335692	3L_2335692_SNP [dm3] 3L_2335692_SNP [dm6]	T	C	5.162e^-4	0.965	INTRON MsR1
3L	17900877	3L_17900877_SNP [dm3] 3L_17907777_SNP [dm6]	A	G	5.164e^-4	0.965	UTR_5_PRIME Prestin UPSTREAM CG14353	TF binding site mE1_TFBS_Ubx
3L	17901045	3L_17901045_SNP [dm3] 3L_17907945_SNP [dm6]	A	T	5.164e^-4	0.965	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Ubx
3L	2265877	3L_2265877_SNP [dm3] 3L_2265877_SNP [dm6]	A	C	5.172e^-4	0.965	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2594256	2L_2594256_SNP [dm3] 2L_2594256_SNP [dm6]	G	A	5.177e^-4	0.965	INTERGENIC
2L	5099723	2L_5099723_SNP [dm3] 2L_5099723_SNP [dm6]	G	T	5.179e^-4	0.965	DOWNSTREAM CG4230 INTRON CG8680	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	19675997	2R_19675997_SNP [dm3] 2R_23788474_SNP [dm6]	A	T	5.183e^-4	0.965	INTRON CG9850
2R	7463719	2R_7463719_SNP [dm3] 2R_11576214_SNP [dm6]	A	T	5.184e^-4	0.965	INTERGENIC
2R	7463729	2R_7463729_SNP [dm3] 2R_11576224_SNP [dm6]	A	C	5.184e^-4	0.965	INTERGENIC
2R	6961574	2R_6961574_SNP [dm3] 2R_11074069_SNP [dm6]	A	T	5.199e^-4	0.965	INTRON luna
2L	5099717	2L_5099717_SNP [dm3] 2L_5099717_SNP [dm6]	A	G	5.202e^-4	0.965	DOWNSTREAM CG4230 INTRON CG8680	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	22022151	3L_22022151_SNP [dm3] 3L_22029051_SNP [dm6]	A	G	5.210e^-4	0.965	UPSTREAM CG7140 & 1 other DOWNSTREAM CG43392 INTERGENIC
X	15017331	X_15017331_SNP [dm3] X_15123298_SNP [dm6]	C	T	5.210e^-4	0.965	INTERGENIC
3R	8089796	3R_8089796_SNP [dm3] 3R_12264074_SNP [dm6]	G	A	5.213e^-4	0.965	INTRON svp
3L	16250777	3L_16250777_SNP [dm3] 3L_16257677_SNP [dm6]	A	G	5.228e^-4	0.965	UPSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12560171	3L_12560171_SNP [dm3] 3L_12567071_SNP [dm6]	G	T	5.244e^-4	0.965	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2002086	X_2002086_SNP [dm3] X_2108053_SNP [dm6]	T	C	5.245e^-4	0.965	UPSTREAM csw INTRON csw	TF binding site mE1_TFBS_sens
X	19646039	X_19646039_SNP [dm3] X_19752006_SNP [dm6]	A	G	5.267e^-4	0.965	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9746494	3R_9746494_SNP [dm3] 3R_13920772_SNP [dm6]	T	A	5.267e^-4	0.965	INTERGENIC
3R	9746575	3R_9746575_INS [dm3] 3R_13920853_INS [dm6]	A	GACCCTTAAG	5.267e^-4	0.965	INTERGENIC
3R	19277850	3R_19277850_SNP [dm3] 3R_23452128_SNP [dm6]	C	A	5.271e^-4	0.965	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
3R	13413265	3R_13413265_SNP [dm3] 3R_17587543_SNP [dm6]	T	G	5.275e^-4	0.965	INTERGENIC
3R	22224827	3R_22224827_SNP [dm3] 3R_26399105_SNP [dm6]	C	G	5.277e^-4	0.965	INTERGENIC
2R	8846657	2R_8846657_SNP [dm3] 2R_12959152_SNP [dm6]	T	C	5.281e^-4	0.965	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10908008	3L_10908008_SNP [dm3] 3L_10914908_SNP [dm6]	G	A	5.285e^-4	0.965	INTERGENIC
3L	17544848	3L_17544848_SNP [dm3] 3L_17551748_SNP [dm6]	G	T	5.285e^-4	0.965	UTR_3_PRIME CycT DOWNSTREAM CG7542 & 1 other
3R	963853	3R_963853_SNP [dm3] 3R_5138131_SNP [dm6]	A	G	5.316e^-4	0.965	UTR_5_PRIME CG12589 UPSTREAM CG12589	TF binding site mE1_TFBS_cad
3R	17686871	3R_17686871_SNP [dm3] 3R_21861149_SNP [dm6]	A	C	5.331e^-4	0.965	UPSTREAM CR45644 DOWNSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4515068	3L_4515068_SNP [dm3] 3L_4515068_SNP [dm6]	C	T	5.341e^-4	0.965	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2R	14427843	2R_14427843_SNP [dm3] 2R_18540338_SNP [dm6]	G	A	5.346e^-4	0.965	DOWNSTREAM Pepck & 1 other INTRON Rgk2	TF binding site mE1_TFBS_chinmo
2R	16918638	2R_16918638_SNP [dm3] 2R_21031133_SNP [dm6]	G	A	5.356e^-4	0.965	INTERGENIC
2L	15433059	2L_15433059_SNP [dm3] 2L_15433059_SNP [dm6]	T	C	5.358e^-4	0.965	UPSTREAM CG4161 INTERGENIC
2R	5897908	2R_5897908_SNP [dm3] 2R_10010403_SNP [dm6]	G	C	5.359e^-4	0.965	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi
2L	7010061	2L_7010061_SNP [dm3] 2L_7010061_SNP [dm6]	A	G	5.359e^-4	0.965	UPSTREAM uif INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17713450	3R_17713450_SNP [dm3] 3R_21887728_SNP [dm6]	G	A	5.367e^-4	0.965	UPSTREAM dnd INTRON CG6678
2R	15460241	2R_15460241_SNP [dm3] 2R_19572736_SNP [dm6]	C	A	5.370e^-4	0.965	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	968134	3L_968134_SNP [dm3] 3L_968134_SNP [dm6]	G	A	5.373e^-4	0.965	INTRON Glut1
3L	12282614	3L_12282614_SNP [dm3] 3L_12289514_SNP [dm6]	C	T	5.381e^-4	0.965	EXON CR45658
3L	2759937	3L_2759937_SNP [dm3] 3L_2759937_SNP [dm6]	G	T	5.386e^-4	0.965	INTRON Mrtf
2L	3871494	2L_3871494_SNP [dm3] 2L_3871494_SNP [dm6]	T	G	5.389e^-4	0.965	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
2L	3871502	2L_3871502_SNP [dm3] 2L_3871502_SNP [dm6]	A	C	5.389e^-4	0.965	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
2R	6937439	2R_6937439_SNP [dm3] 2R_11049934_SNP [dm6]	A	G	5.408e^-4	0.965	INTRON luna
2R	6348441	2R_6348441_SNP [dm3] 2R_10460936_SNP [dm6]	G	A	5.422e^-4	0.965	SYNONYMOUS_CODING Galphao UTR_5_PRIME Galphao	TF binding site mE1_TFBS_inv
X	16640455	X_16640455_SNP [dm3] X_16746422_SNP [dm6]	A	T	5.433e^-4	0.965	UPSTREAM CG9634 INTRON CG9634
2L	12268997	2L_12268997_SNP [dm3] 2L_12268997_SNP [dm6]	C	T	5.437e^-4	0.965	INTRON aret
3R	9803787	3R_9803787_SNP [dm3] 3R_13978065_SNP [dm6]	T	G	5.444e^-4	0.965	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	318859	2L_318859_SNP [dm3] 2L_318859_SNP [dm6]	T	C	5.448e^-4	0.965	SYNONYMOUS_CODING CG11912 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25166539	3R_25166539_SNP [dm3] 3R_29340817_SNP [dm6]	T	C	5.449e^-4	0.965	INTERGENIC
3L	5862941	3L_5862941_DEL [dm3] 3L_5869841_DEL [dm6]	ATGTCGCCGA	A	5.451e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20107326	3R_20107326_SNP [dm3] 3R_24281604_SNP [dm6]	G	A	5.453e^-4	0.965	DOWNSTREAM CG13611 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	367529	2L_367529_SNP [dm3] 2L_367529_SNP [dm6]	T	C	5.466e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19181637	2R_19181637_SNP [dm3] 2R_23294114_SNP [dm6]	A	C	5.468e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25303152	3R_25303152_SNP [dm3] 3R_29477430_SNP [dm6]	T	C	5.473e^-4	0.965	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24541444	3R_24541444_SNP [dm3] 3R_28715722_SNP [dm6]	C	T	5.474e^-4	0.965	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11485541	3L_11485541_SNP [dm3] 3L_11492441_SNP [dm6]	G	T	5.489e^-4	0.965	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	5.489e^-4	0.965	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486181	3L_11486181_SNP [dm3] 3L_11493081_SNP [dm6]	G	T	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486233	3L_11486233_SNP [dm3] 3L_11493133_SNP [dm6]	G	A	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486235	3L_11486235_SNP [dm3] 3L_11493135_SNP [dm6]	A	G	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486237	3L_11486237_SNP [dm3] 3L_11493137_SNP [dm6]	A	T	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486292	3L_11486292_SNP [dm3] 3L_11493192_SNP [dm6]	T	A	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486366	3L_11486366_SNP [dm3] 3L_11493266_SNP [dm6]	G	A	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486441	3L_11486441_DEL [dm3] 3L_11493341_DEL [dm6]	AT	A	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486451	3L_11486451_SNP [dm3] 3L_11493351_SNP [dm6]	C	A	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486466	3L_11486466_SNP [dm3] 3L_11493366_SNP [dm6]	A	T	5.489e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4713403	2R_4713403_SNP [dm3] 2R_8825898_SNP [dm6]	C	T	5.499e^-4	0.965	UPSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	8070170	3R_8070170_SNP [dm3] 3R_12244448_SNP [dm6]	G	T	5.506e^-4	0.965	UPSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5435454	2L_5435454_SNP [dm3] 2L_5435454_SNP [dm6]	C	T	5.510e^-4	0.965	DOWNSTREAM CR31647 INTERGENIC
3R	6493864	3R_6493864_SNP [dm3] 3R_10668142_SNP [dm6]	G	T	5.530e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	4873439	2L_4873439_SNP [dm3] 2L_4873439_SNP [dm6]	C	T	5.545e^-4	0.965	INTRON pog
2L	1901190	2L_1901190_SNP [dm3] 2L_1901190_SNP [dm6]	G	T	5.546e^-4	0.965	INTRON CG7337
3L	12560176	3L_12560176_SNP [dm3] 3L_12567076_SNP [dm6]	A	G	5.548e^-4	0.965	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25506690	3R_25506690_SNP [dm3] 3R_29680968_SNP [dm6]	G	C	5.551e^-4	0.965	SYNONYMOUS_CODING CG7582 DOWNSTREAM Cap-D2	TF binding site mE1_TFBS_cad
2L	7126501	2L_7126501_SNP [dm3] 2L_7126501_SNP [dm6]	C	T	5.554e^-4	0.965	INTRON Pvf3
2R	6208869	2R_6208869_SNP [dm3] 2R_10321364_SNP [dm6]	T	C	5.556e^-4	0.965	SYNONYMOUS_CODING Ndg UPSTREAM CG34222 DOWNSTREAM CG42732
3R	21265056	3R_21265056_SNP [dm3] 3R_25439334_SNP [dm6]	G	C	5.561e^-4	0.965	INTRON Fur1
3L	17923104	3L_17923104_SNP [dm3] 3L_17930004_SNP [dm6]	C	T	5.600e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18105818	2L_18105818_SNP [dm3] 2L_18105818_SNP [dm6]	G	A	5.602e^-4	0.965	INTERGENIC
2R	18427471	2R_18427471_SNP [dm3] 2R_22539966_SNP [dm6]	C	T	5.606e^-4	0.965	INTRON px
3R	27873134	3R_27873134_SNP [dm3] 3R_32047412_SNP [dm6]	A	G	5.608e^-4	0.965	UTR_3_PRIME krz
2R	5497231	2R_5497231_SNP [dm3] 2R_9609726_SNP [dm6]	T	C	5.612e^-4	0.965	UPSTREAM CR44069 INTRON CG12926	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5283670	2R_5283670_SNP [dm3] 2R_9396165_SNP [dm6]	T	C	5.628e^-4	0.965	START_GAINED CG8800 UTR_5_PRIME CG8800 DOWNSTREAM CG8801 & 1 other
X	20854720	X_20854720_INS [dm3] X_20983693_INS [dm6]	A	AG	5.628e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	20854722	X_20854722_SNP [dm3] X_20983695_SNP [dm6]	G	A	5.628e^-4	0.965	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	9532610	3R_9532610_SNP [dm3] 3R_13706888_SNP [dm6]	A	C	5.632e^-4	0.965	UTR_5_PRIME Adgf-C
2R	13022203	2R_13022203_SNP [dm3] 2R_17134698_SNP [dm6]	G	C	5.642e^-4	0.965	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
X	14993547	X_14993547_SNP [dm3] X_15099514_SNP [dm6]	T	A	5.644e^-4	0.965	INTRON Rab3-GEF
X	3461092	X_3461092_SNP [dm3] X_3567059_SNP [dm6]	G	C	5.651e^-4	0.965	INTRON CG32791 & 1 other
3R	6948706	3R_6948706_SNP [dm3] 3R_11122984_SNP [dm6]	A	T	5.674e^-4	0.965	INTERGENIC
3L	418283	3L_418283_SNP [dm3] 3L_418283_SNP [dm6]	C	G	5.680e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	5.689e^-4	0.965	INTRON CG31221
X	8171058	X_8171058_INS [dm3] X_8277025_INS [dm6]	T	TC	5.696e^-4	0.965	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636	TF binding site mE1_TFBS_HSA
3L	4605960	3L_4605960_SNP [dm3] 3L_4605960_SNP [dm6]	G	A	5.703e^-4	0.965	INTRON Src64B
3L	14557884	3L_14557884_SNP [dm3] 3L_14564784_SNP [dm6]	T	G	5.709e^-4	0.965	INTERGENIC
3L	14570270	3L_14570270_SNP [dm3] 3L_14577170_SNP [dm6]	T	A	5.709e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	1081188	X_1081188_SNP [dm3] X_1187155_SNP [dm6]	T	A	5.712e^-4	0.965	INTRON CG14626	TF binding site mE1_TFBS_chinmo
3R	13794327	3R_13794327_SNP [dm3] 3R_17968605_SNP [dm6]	G	T	5.723e^-4	0.965	INTRON cpo
2L	3659359	2L_3659359_SNP [dm3] 2L_3659359_SNP [dm6]	A	T	5.727e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3659371	2L_3659371_SNP [dm3] 2L_3659371_SNP [dm6]	C	A	5.727e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4349372	3L_4349372_SNP [dm3] 3L_4349372_SNP [dm6]	C	T	5.729e^-4	0.965	INTRON Cip4
3R	22225368	3R_22225368_SNP [dm3] 3R_26399646_SNP [dm6]	T	C	5.737e^-4	0.965	INTERGENIC
2L	8967834	2L_8967834_SNP [dm3] 2L_8967834_SNP [dm6]	A	G	5.784e^-4	0.965	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
3L	12947887	3L_12947887_DEL [dm3] 3L_12954787_DEL [dm6]	CGCA	AC	5.789e^-4	0.965	UPSTREAM CG10752 INTERGENIC
3L	7481369	3L_7481369_SNP [dm3] 3L_7488269_SNP [dm6]	A	G	5.797e^-4	0.965	DOWNSTREAM mthl6 INTERGENIC
2R	5491698	2R_5491698_SNP [dm3] 2R_9604193_SNP [dm6]	C	G	5.798e^-4	0.965	INTRON CG1902	TF binding site mE1_TFBS_sens
3R	22229221	3R_22229221_SNP [dm3] 3R_26403499_SNP [dm6]	G	T	5.802e^-4	0.965	INTRON ppk15
X	15142471	X_15142471_SNP [dm3] X_15248438_SNP [dm6]	C	A	5.811e^-4	0.965	INTERGENIC
3R	8083538	3R_8083538_SNP [dm3] 3R_12257816_SNP [dm6]	C	T	5.813e^-4	0.965	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	10613202	X_10613202_DEL [dm3] X_10719169_DEL [dm6]	CTTGACAATTTAATTTAAAC...	C	5.818e^-4	0.965	INTRON CG32676
2R	1363884	2R_1363884_SNP [dm3] 2R_5476379_SNP [dm6]	C	T	5.843e^-4	0.965	INTRON CG30440	transposable element FlyBase
X	14754710	X_14754710_SNP [dm3] X_14860677_SNP [dm6]	G	A	5.852e^-4	0.965	INTRON Flo2
2R	13668821	2R_13668821_SNP [dm3] 2R_17781316_SNP [dm6]	G	A	5.880e^-4	0.965	INTRON fab1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	6151011	2R_6151011_SNP [dm3] 2R_10263506_SNP [dm6]	C	A	5.881e^-4	0.965	EXON CR30009	TF binding site mE1_TFBS_HSA
3L	17544950	3L_17544950_SNP [dm3] 3L_17551850_SNP [dm6]	G	T	5.891e^-4	0.965	UTR_3_PRIME CycT DOWNSTREAM CG7542 & 1 other
2R	6153915	2R_6153915_SNP [dm3] 2R_10266410_SNP [dm6]	T	G	5.900e^-4	0.965	START_GAINED CG12910 UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910
3L	2875343	3L_2875343_SNP [dm3] 3L_2875343_SNP [dm6]	A	G	5.904e^-4	0.965	INTRON CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	540726	4_540726_SNP [dm3] 4_520100_SNP [dm6]	A	T	5.921e^-4	0.965	INTRON zfh2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10918595	2L_10918595_SNP [dm3] 2L_10918595_SNP [dm6]	A	G	5.925e^-4	0.965	INTRON dpr2
2L	21939803	2L_21939803_SNP [dm3] 2L_21939803_SNP [dm6]	T	C	5.927e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2759210	X_2759210_SNP [dm3] X_2865177_SNP [dm6]	T	C	5.928e^-4	0.965	INTRON kirre
3R	27244085	3R_27244085_SNP [dm3] 3R_31418363_SNP [dm6]	T	A	5.941e^-4	0.965	INTRON Gprk2
2L	4186206	2L_4186206_SNP [dm3] 2L_4186206_SNP [dm6]	T	A	5.954e^-4	0.965	DOWNSTREAM CG31961 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14563870	3L_14563870_SNP [dm3] 3L_14570770_SNP [dm6]	T	G	5.958e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5285601	2R_5285601_SNP [dm3] 2R_9398096_SNP [dm6]	C	T	5.978e^-4	0.965	SYNONYMOUS_CODING CG8801 UPSTREAM l_2_k10201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18547869	3R_18547869_SNP [dm3] 3R_22722147_SNP [dm6]	A	G	5.986e^-4	0.965	SYNONYMOUS_CODING Irp-1A UPSTREAM wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18547985	3R_18547985_SNP [dm3] 3R_22722263_SNP [dm6]	T	C	5.986e^-4	0.965	INTRON Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19953217	2R_19953217_SNP [dm3] 2R_24065694_SNP [dm6]	C	G	5.996e^-4	0.965	DOWNSTREAM yki & 1 other INTERGENIC
3R	10654708	3R_10654708_SNP [dm3] 3R_14828986_SNP [dm6]	T	G	5.997e^-4	0.965	INTRON btsz
2R	18722342	2R_18722342_SNP [dm3] 2R_22834819_SNP [dm6]	C	A	5.999e^-4	0.965	DOWNSTREAM CG30265 INTRON CG12490
3R	21953547	3R_21953547_SNP [dm3] 3R_26127825_SNP [dm6]	T	A	6.002e^-4	0.965	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3R	21953557	3R_21953557_SNP [dm3] 3R_26127835_SNP [dm6]	T	C	6.002e^-4	0.965	UTR_3_PRIME CG14556 UPSTREAM CG31324 INTRON CG31324
3L	989479	3L_989479_SNP [dm3] 3L_989479_SNP [dm6]	C	G	6.011e^-4	0.965	NON_SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8010235	2L_8010235_SNP [dm3] 2L_8010235_SNP [dm6]	C	T	6.011e^-4	0.965	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10844569	2L_10844569_SNP [dm3] 2L_10844569_SNP [dm6]	G	A	6.015e^-4	0.965	NON_SYNONYMOUS_CODING CG17139 UTR_5_PRIME CG17140 UPSTREAM CG17140
2R	10567331	2R_10567331_SNP [dm3] 2R_14679826_SNP [dm6]	G	A	6.019e^-4	0.965	INTRON mspo
2R	1378679	2R_1378679_SNP [dm3] 2R_5491174_SNP [dm6]	G	T	6.024e^-4	0.965	INTRON CG30440
3L	11486106	3L_11486106_SNP [dm3] 3L_11493006_SNP [dm6]	T	G	6.027e^-4	0.965	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8370787	2L_8370787_SNP [dm3] 2L_8370787_SNP [dm6]	A	G	6.031e^-4	0.965	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	13246263	3L_13246263_SNP [dm3] 3L_13253163_SNP [dm6]	A	G	6.049e^-4	0.965	INTRON caps	TF binding site mE1_TFBS_inv
2R	7472368	2R_7472368_SNP [dm3] 2R_11584863_SNP [dm6]	G	A	6.054e^-4	0.965	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3975427	3L_3975427_SNP [dm3] 3L_3975427_SNP [dm6]	T	A	6.055e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
3L	3975429	3L_3975429_SNP [dm3] 3L_3975429_SNP [dm6]	G	C	6.055e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
X	1173967	X_1173967_SNP [dm3] X_1279934_SNP [dm6]	T	C	6.072e^-4	0.965	INTERGENIC
3L	12560136	3L_12560136_SNP [dm3] 3L_12567036_SNP [dm6]	A	C	6.079e^-4	0.965	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3133926	3L_3133926_SNP [dm3] 3L_3133926_SNP [dm6]	A	T	6.082e^-4	0.965	UTR_5_PRIME CG11537 INTRON CG11537
X	12272509	X_12272509_SNP [dm3] X_12378476_SNP [dm6]	C	G	6.085e^-4	0.965	UPSTREAM Ir11a INTERGENIC
2R	16621768	2R_16621768_SNP [dm3] 2R_20734263_SNP [dm6]	T	C	6.097e^-4	0.965	INTRON dpr
2R	11473425	2R_11473425_SNP [dm3] 2R_15585920_SNP [dm6]	C	T	6.097e^-4	0.965	INTERGENIC
2R	14952297	2R_14952297_DEL [dm3] 2R_19064792_DEL [dm6]	CC	C	6.098e^-4	0.965	INTERGENIC
3R	7068496	3R_7068496_SNP [dm3] 3R_11242774_SNP [dm6]	A	C	6.099e^-4	0.965	UTR_3_PRIME CG17734 DOWNSTREAM scpr-A INTRON CG17734	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	6493425	3R_6493425_SNP [dm3] 3R_10667703_SNP [dm6]	T	C	6.101e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2608411	X_2608411_SNP [dm3] X_2714378_SNP [dm6]	G	A	6.103e^-4	0.965	NON_SYNONYMOUS_CODING CG2694 UTR_5_PRIME CG2694 UPSTREAM CG2685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	11458237	3L_11458237_SNP [dm3] 3L_11465137_SNP [dm6]	G	A	6.112e^-4	0.965	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
X	6266663	X_6266663_SNP [dm3] X_6372630_SNP [dm6]	G	C	6.134e^-4	0.965	INTRON PpV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	6266664	X_6266664_SNP [dm3] X_6372631_SNP [dm6]	A	G	6.134e^-4	0.965	INTRON PpV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	15991052	2L_15991052_SNP [dm3] 2L_15991052_SNP [dm6]	G	A	6.142e^-4	0.965	INTERGENIC
2L	11947308	2L_11947308_SNP [dm3] 2L_11947308_SNP [dm6]	C	A	6.147e^-4	0.965	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	18722329	2R_18722329_SNP [dm3] 2R_22834806_SNP [dm6]	C	T	6.164e^-4	0.965	DOWNSTREAM CG30265 INTRON CG12490
X	14914854	X_14914854_SNP [dm3] X_15020821_SNP [dm6]	G	C	6.166e^-4	0.965	INTRON hiw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	6831495	2L_6831495_SNP [dm3] 2L_6831495_SNP [dm6]	A	T	6.182e^-4	0.965	SYNONYMOUS_CODING sens-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7559398	2L_7559398_SNP [dm3] 2L_7559398_SNP [dm6]	A	T	6.190e^-4	0.965	INTRON RapGAP1
2L	7559404	2L_7559404_SNP [dm3] 2L_7559404_SNP [dm6]	T	A	6.190e^-4	0.965	INTRON RapGAP1
2L	7559419	2L_7559419_SNP [dm3] 2L_7559419_SNP [dm6]	T	A	6.190e^-4	0.965	INTRON RapGAP1
3R	26993639	3R_26993639_SNP [dm3] 3R_31167917_SNP [dm6]	G	A	6.191e^-4	0.965	INTRON Gycbeta100B & 1 other
X	17305407	X_17305407_SNP [dm3] X_17411374_SNP [dm6]	G	A	6.193e^-4	0.965	INTERGENIC
3R	5475976	3R_5475976_SNP [dm3] 3R_9650254_SNP [dm6]	A	T	6.199e^-4	0.965	UTR_3_PRIME Dh44 DOWNSTREAM Dh44 & 1 other
2L	5624095	2L_5624095_SNP [dm3] 2L_5624095_SNP [dm6]	A	T	6.202e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5624116	2L_5624116_SNP [dm3] 2L_5624116_SNP [dm6]	T	A	6.202e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5624132	2L_5624132_SNP [dm3] 2L_5624132_SNP [dm6]	A	T	6.202e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5624416	2L_5624416_SNP [dm3] 2L_5624416_SNP [dm6]	A	C	6.202e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5624420	2L_5624420_DEL [dm3] 2L_5624420_DEL [dm6]	AC	A	6.202e^-4	0.965	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26993703	3R_26993703_SNP [dm3] 3R_31167981_SNP [dm6]	A	T	6.210e^-4	0.965	INTRON Gycbeta100B & 1 other
3L	13705361	3L_13705361_SNP [dm3] 3L_13712261_SNP [dm6]	C	T	6.217e^-4	0.965	INTRON bru-3
2L	7555667	2L_7555667_SNP [dm3] 2L_7555667_SNP [dm6]	G	A	6.223e^-4	0.965	INTRON RapGAP1
X	18276023	X_18276023_SNP [dm3] X_18381990_SNP [dm6]	T	A	6.223e^-4	0.965	DOWNSTREAM CG6179 INTRON betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18276050	X_18276050_SNP [dm3] X_18382017_SNP [dm6]	A	C	6.223e^-4	0.965	DOWNSTREAM CG6179 INTRON betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6348396	2R_6348396_SNP [dm3] 2R_10460891_SNP [dm6]	T	A	6.225e^-4	0.965	INTRON Galphao	TF binding site mE1_TFBS_inv
2R	12339606	2R_12339606_SNP [dm3] 2R_16452101_SNP [dm6]	A	C	6.225e^-4	0.965	INTERGENIC
2L	4899764	2L_4899764_INS [dm3] 2L_4899764_INS [dm6]	T	TAT	6.225e^-4	0.965	INTRON CG3036
2R	18722436	2R_18722436_SNP [dm3] 2R_22834913_SNP [dm6]	C	G	6.226e^-4	0.965	DOWNSTREAM CG30265 INTRON CG12490
3L	17928734	3L_17928734_INS [dm3] 3L_17935634_INS [dm6]	T	TTAC	6.230e^-4	0.965	DOWNSTREAM CG43173 INTRON CG43174
2R	1326148	2R_1326148_SNP [dm3] 2R_5438643_SNP [dm6]	T	C	6.235e^-4	0.965	INTRON laccase2
2L	314219	2L_314219_DEL [dm3] 2L_314219_DEL [dm6]	TT	T	6.241e^-4	0.965	INTRON Plc21C	TF binding site mE1_TFBS_inv
2L	6607310	2L_6607310_SNP [dm3] 2L_6607310_SNP [dm6]	A	C	6.248e^-4	0.965	INTERGENIC
3L	17929262	3L_17929262_DEL [dm3] 3L_17936162_DEL [dm6]	TT	T	6.256e^-4	0.965	DOWNSTREAM CG43173 INTRON CG43174
3L	4727665	3L_4727665_SNP [dm3] 3L_4727665_SNP [dm6]	T	A	6.265e^-4	0.965	INTRON RhoGEF64C
X	8477229	X_8477229_SNP [dm3] X_8583196_SNP [dm6]	A	C	6.271e^-4	0.965	INTRON CG12065
2L	3688995	2L_3688995_INS [dm3] 2L_3688995_INS [dm6]	A	ACATATGTGTG...	6.275e^-4	0.965	INTRON CG34340
3L	17367282	3L_17367282_SNP [dm3] 3L_17374182_SNP [dm6]	T	A	6.276e^-4	0.965	INTRON Cad74A	TF binding site mE1_TFBS_cad
3L	17367302	3L_17367302_SNP [dm3] 3L_17374202_SNP [dm6]	G	C	6.276e^-4	0.965	INTRON Cad74A	TF binding site mE1_TFBS_cad
2R	19671107	2R_19671107_SNP [dm3] 2R_23783584_SNP [dm6]	G	A	6.276e^-4	0.965	INTRON CG9850
2L	6425687	2L_6425687_SNP [dm3] 2L_6425687_SNP [dm6]	G	T	6.280e^-4	0.965	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6425786	2L_6425786_SNP [dm3] 2L_6425786_SNP [dm6]	T	C	6.280e^-4	0.965	SYNONYMOUS_CODING Fic DOWNSTREAM CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	6.282e^-4	0.965	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	6.282e^-4	0.965	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	6.282e^-4	0.965	INTRON CG7470
2L	7131761	2L_7131761_SNP [dm3] 2L_7131761_SNP [dm6]	G	T	6.286e^-4	0.965	INTRON Pvf3
2L	7131765	2L_7131765_SNP [dm3] 2L_7131765_SNP [dm6]	G	A	6.286e^-4	0.965	INTRON Pvf3
2L	3184835	2L_3184835_SNP [dm3] 2L_3184835_SNP [dm6]	C	G	6.287e^-4	0.965	INTRON CG34393
2R	15368445	2R_15368445_SNP [dm3] 2R_19480940_SNP [dm6]	G	T	6.288e^-4	0.965	INTRON par-1
X	7003668	X_7003668_SNP [dm3] X_7109635_SNP [dm6]	T	G	6.290e^-4	0.965	UTR_5_PRIME fz4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	16614134	2R_16614134_SNP [dm3] 2R_20726629_SNP [dm6]	A	C	6.296e^-4	0.965	INTRON dpr
3L	1385366	3L_1385366_SNP [dm3] 3L_1385366_SNP [dm6]	C	G	6.302e^-4	0.965	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2L	2629729	2L_2629729_SNP [dm3] 2L_2629729_SNP [dm6]	T	G	6.310e^-4	0.965	INTERGENIC
2L	2629915	2L_2629915_SNP [dm3] 2L_2629915_SNP [dm6]	G	A	6.310e^-4	0.965	INTERGENIC
2L	2629929	2L_2629929_SNP [dm3] 2L_2629929_SNP [dm6]	T	C	6.310e^-4	0.965	INTERGENIC
2L	2629944	2L_2629944_SNP [dm3] 2L_2629944_SNP [dm6]	C	T	6.310e^-4	0.965	INTERGENIC
3L	1385095	3L_1385095_SNP [dm3] 3L_1385095_SNP [dm6]	G	T	6.318e^-4	0.965	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2L	6548615	2L_6548615_SNP [dm3] 2L_6548615_SNP [dm6]	T	C	6.328e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6548634	2L_6548634_SNP [dm3] 2L_6548634_SNP [dm6]	T	G	6.328e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8007538	2L_8007538_SNP [dm3] 2L_8007538_SNP [dm6]	T	C	6.340e^-4	0.965	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC	TF binding site mE1_TFBS_HSA
X	10613065	X_10613065_SNP [dm3] X_10719032_SNP [dm6]	A	T	6.342e^-4	0.965	INTRON CG32676
X	10613067	X_10613067_SNP [dm3] X_10719034_SNP [dm6]	T	G	6.342e^-4	0.965	INTRON CG32676

Missing results

By genomic position
Variant impact
Gene name

pc_FL_PElem_SC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results